Query 017387
Match_columns 372
No_of_seqs 364 out of 2171
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:35:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 6.4E-47 2.2E-51 373.4 12.7 257 90-363 5-283 (349)
2 2zyl_A Possible oxidoreductase 100.0 1.3E-41 4.5E-46 339.6 14.3 246 91-352 23-277 (386)
3 1z01_A 2-OXO-1,2-dihydroquinol 100.0 1.6E-41 5.4E-46 344.9 14.9 262 68-353 20-337 (446)
4 3n0q_A Putative aromatic-ring 100.0 1.1E-42 3.6E-47 349.6 4.9 192 66-269 16-213 (409)
5 3gcf_A Terminal oxygenase comp 100.0 5E-41 1.7E-45 333.4 14.3 188 81-281 22-211 (394)
6 3vca_A Ring-hydroxylating diox 100.0 1.6E-42 5.5E-47 348.6 2.9 192 66-269 18-215 (412)
7 2de6_A Terminal oxygenase comp 100.0 2.5E-40 8.7E-45 330.8 12.8 169 89-270 24-194 (392)
8 3gkq_A Terminal oxygenase comp 100.0 1E-39 3.4E-44 323.3 14.3 176 83-273 23-200 (389)
9 3gzx_A Biphenyl dioxygenase su 100.0 5.1E-41 1.7E-45 341.5 -1.2 197 67-268 33-244 (457)
10 2bmo_A Oxygenase-alpha NBDO; n 100.0 2.2E-40 7.5E-45 336.5 -1.7 195 67-268 11-216 (447)
11 2gbw_A Biphenyl 2,3-dioxygenas 100.0 9.8E-40 3.3E-44 332.4 0.2 195 67-268 13-217 (454)
12 2b1x_A Naphthalene dioxygenase 100.0 4.9E-39 1.7E-43 328.6 0.6 197 66-268 20-226 (470)
13 1uli_A Biphenyl dioxygenase la 100.0 6.4E-38 2.2E-42 319.6 -1.8 193 67-267 31-234 (460)
14 2i7f_A Ferredoxin component of 99.9 7.6E-28 2.6E-32 198.5 7.4 102 93-211 3-106 (108)
15 3dqy_A Toluene 1,2-dioxygenase 99.9 8.5E-28 2.9E-32 197.6 7.1 102 93-211 1-103 (106)
16 2qpz_A Naphthalene 1,2-dioxyge 99.9 9E-28 3.1E-32 196.4 6.6 101 92-209 2-103 (103)
17 1fqt_A Rieske-type ferredoxin 99.9 1.6E-27 5.5E-32 197.9 8.1 104 92-212 4-109 (112)
18 1vm9_A Toluene-4-monooxygenase 99.9 1.7E-27 5.9E-32 197.4 7.2 103 93-212 1-105 (111)
19 2de6_D Ferredoxin component of 99.9 1E-27 3.6E-32 200.2 5.2 105 91-212 2-108 (115)
20 2jza_A Nitrite reductase [NAD( 99.9 5.3E-27 1.8E-31 200.2 8.4 104 93-212 3-112 (130)
21 3gce_A Ferredoxin component of 99.9 5.6E-27 1.9E-31 197.6 7.9 103 93-212 10-115 (121)
22 2jo6_A Nitrite reductase [NAD( 99.9 5E-27 1.7E-31 195.2 6.3 101 93-209 6-112 (113)
23 4aiv_A Probable nitrite reduct 99.9 5.9E-27 2E-31 197.1 5.9 104 91-210 7-117 (119)
24 3d89_A Rieske domain-containin 99.9 1E-27 3.6E-32 210.8 1.3 117 91-212 14-137 (157)
25 3c0d_A Putative nitrite reduct 99.9 5.7E-27 1.9E-31 196.9 5.7 104 92-211 4-112 (119)
26 1rie_A Rieske iron-sulfur prot 99.8 1.3E-21 4.3E-26 166.7 7.0 97 93-206 5-128 (129)
27 1rfs_A Rieske protein; iron-su 99.8 6.3E-22 2.1E-26 170.7 5.1 102 91-209 19-124 (139)
28 1g8k_B Arsenite oxidase; molyb 99.8 4.6E-21 1.6E-25 164.0 6.5 98 93-207 7-119 (133)
29 3azc_A Cytochrome B6-F complex 99.7 2.8E-21 9.5E-26 165.3 0.0 103 92-211 14-121 (133)
30 4aay_B AROB; oxidoreductase, r 99.8 7.9E-20 2.7E-24 163.3 5.4 99 93-207 50-161 (175)
31 1pp9_E Ubiquinol-cytochrome C 99.7 4.2E-18 1.4E-22 154.7 7.2 94 97-206 75-195 (196)
32 3cx5_E Cytochrome B-C1 complex 99.7 6.4E-18 2.2E-22 152.3 7.4 97 92-206 61-184 (185)
33 2qjy_C Ubiquinol-cytochrome C 99.7 5.3E-18 1.8E-22 153.1 6.8 98 94-206 49-186 (187)
34 1vf5_D Rieske iron-sulfur prot 99.7 2.1E-18 7.3E-23 154.6 3.9 92 100-208 70-164 (179)
35 2nwf_A Ubiquinol-cytochrome C 99.7 6.4E-18 2.2E-22 145.9 6.2 93 99-206 7-140 (141)
36 1nyk_A Rieske iron-sulfur prot 99.7 9.8E-18 3.4E-22 148.4 6.0 70 127-211 78-149 (165)
37 1jm1_A Rieske iron-sulfur prot 99.6 3.5E-17 1.2E-21 149.5 -0.8 86 108-208 55-166 (204)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=6.4e-47 Score=373.36 Aligned_cols=257 Identities=24% Similarity=0.373 Sum_probs=194.5
Q ss_pred ecccceeeeeeccCCCCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCCCccCCCCceeeeeeceeecCCCcc
Q 017387 90 WRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSC 169 (372)
Q Consensus 90 ~~~~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw~Fd~dG~c 169 (372)
+++.||+||+++|| +|+++.++++|++|+|||+ .+|+++|+.|+|||||++|+.|.++ ++.|+||||||+||++|+|
T Consensus 5 ~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~-~~G~v~a~~n~CpHrg~~L~~G~~~-~~~i~CpyHgw~fd~~G~~ 81 (349)
T 3gke_A 5 VRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQ-PDGVVAALLDICPHRFAPLSDGILV-NGHLQCPYHGLEFDGGGQC 81 (349)
T ss_dssp CCSSCEEEECGGGC-CSSCEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCGGGCEEE-TTEEECTTTCCEECTTCCE
T ss_pred cccccEEEEEHHHC-CCCeEEEEECCEEEEEEEc-CCCcEEEEeCcCCCCCcCCccCCcc-ceEEEECCCCCEEcCCCCc
Confidence 48999999999999 8999999999999999998 7999999999999999999999986 7899999999999999999
Q ss_pred cccCccccCCcccccccCcccccccCCceeecceEEEecCCcchhhhccCCCCCCCCCCCCCCcceEEEeeeccchhhhh
Q 017387 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQRDLFYGYDTL 249 (372)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~nwk~~ 249 (372)
+.+|+... . .+.+.+|++|+|++++|+||||+++++. ++...+|.++ .+++++|......++++||||++
T Consensus 82 ~~~P~~~~--~-----~~~~~~l~~~~v~~~~G~V~v~~~~~~~--~~~~~~p~~~-~~~~~~~~~~~~~~~~~~nwk~~ 151 (349)
T 3gke_A 82 VHNPHGNG--A-----RPASLNVRSFPVVERDALIWIWPGDPAL--ADPGAIPDFG-CRVDPAYRTVGGYGHVDCNYKLL 151 (349)
T ss_dssp EECCSTTC--C-----CCGGGCCCBCCEEEETTEEEECCSCGGG--CCGGGSCCCG-GGGCTTSEEEEEEEEESSCHHHH
T ss_pred cccCcccc--c-----cccccccceeeEEEECCEEEEeeCCCCC--CcccccCCcc-ccCCCCCEEEeEEEEEecCHHhH
Confidence 99995211 1 1356789999999999999999998652 1222345555 56666776555567899999999
Q ss_pred hccCCCCCcccccccccccCccCCCCCCeeecccCcccc---------------ccCC---CCC--CeeEEeeeccceee
Q 017387 250 MENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGF---------------AGAN---DGN--PRISAKFVAPCYYM 309 (372)
Q Consensus 250 ~EN~lD~~H~~~vH~~~~g~~~~~~~~~~~v~~~~~~gf---------------~~~~---~~~--~~~~~~f~~P~~~~ 309 (372)
+||++|+||++++|++++|..+.... +++++..+ .++ .... .+. ....++|.+|++..
T Consensus 152 ~EN~~D~~H~~~~H~~~~~~~~~~~~-~~~v~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~ 229 (349)
T 3gke_A 152 VDNLMDLGHAQYVHRANAQTDAFDRL-EREVIVGD-GEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAML 229 (349)
T ss_dssp HHHHHCGGGHHHHTHHHHCCTTGGGC-EEEEEECS-SEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEE
T ss_pred HHhccccccchhccchhhcCccccCC-CCEEEEcC-CEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEE
Confidence 99999999999999999998765432 23443321 111 0000 111 12458999999876
Q ss_pred eeeeec-ccCcccccceEEEEEEeeeccCCCCCceeEEeeccceeeeec-CCCcee
Q 017387 310 NKIEID-TKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTM-PGPAWW 363 (372)
Q Consensus 310 ~~~~~~-~~~p~~g~~~~~~~~~~~~tP~~~~~tr~~~~~~rnf~~~~~-~~p~w~ 363 (372)
..+.+. .+.| ...+..+++++++||+++++||+||.++|||..... ..+.|.
T Consensus 230 ~~~~~~~~g~p--~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d~~~~~~~~ 283 (349)
T 3gke_A 230 NFIAVAPEGTP--KEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDDPEMDGVLR 283 (349)
T ss_dssp EEEEEEETTSC--GGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTCHHHHHHHH
T ss_pred EEEecccCCCC--CCCceEEEEEEEEecCCCCeEEEEEEEEecCccCchhhhHHHH
Confidence 555442 1112 122345667788899999999999999999975422 234444
No 2
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.3e-41 Score=339.63 Aligned_cols=246 Identities=21% Similarity=0.349 Sum_probs=176.1
Q ss_pred cccceeeeeeccCCCCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCCCccCCCCceeeeeeceeecCCCccc
Q 017387 91 RDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCT 170 (372)
Q Consensus 91 ~~~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw~Fd~dG~c~ 170 (372)
.+.|++||++++|++|+++.++++|++|+|+|+ .+|+++|++|+|||||++|+.|.+. ++.|+||||||+||++|+|+
T Consensus 23 ~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~~G~v~a~~n~CpHrga~L~~g~~~-~~~i~CpyHgw~f~~~G~~~ 100 (386)
T 2zyl_A 23 ARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFAD-SHGDLKVLDGYCRHMGGDLSEGTVK-GDEVACPFHDWRWGGDGRCK 100 (386)
T ss_dssp CSEEEEEEEGGGGCSSSCEEEEETTEEEEEEEC-TTSCEEEEESBCTTTCCBGGGSEEE-TTEEECTTTCCEEETTSBEE
T ss_pred hcceEEEEEHHHCCCCCeEEEEECCeEEEEEEC-CCCCEEEEcCcCCCCCCCCCCCccc-CCEEEeCCCCCEECCCCCcc
Confidence 789999999999998999999999999999998 8999999999999999999999986 67999999999999999999
Q ss_pred ccCccccCCcccccccCcccccccCCceeecceEEEecCCcchhhhccCCCCCCCCCCCCCCcceE-EEeeecc-chhhh
Q 017387 171 RIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSV-TIQRDLF-YGYDT 248 (372)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~-~~~~~~~-~nwk~ 248 (372)
.+|+.... ++..+|++|||++++|+||||+++++.++.++..+|.++ .+++++|... .....++ ||||+
T Consensus 101 ~~P~~~~~--------~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~nwk~ 171 (386)
T 2zyl_A 101 LVPYARRT--------PRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIP-EAASDEWTDWRWNRILIEGSNCRD 171 (386)
T ss_dssp ECTTCSSC--------CTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCG-GGGCTTBCCCEEEEEEEESSCGGG
T ss_pred ccCccccc--------CcccCcceEeEEEECCEEEEEECCccCCCcccccCcccc-cccCCCceEEEEEEEEEcCcCHHh
Confidence 99975432 345689999999999999999986542222233455555 5556666543 3356788 99999
Q ss_pred hhccCCCCCcccccccccccCccC--CCCCCee-ecccCccccc--cCCCCCC--eeEEeeeccceeeeeeeecccCccc
Q 017387 249 LMENVSDPSHIDFAHHKVTGRRDR--AKPLPFK-LESSGHWGFA--GANDGNP--RISAKFVAPCYYMNKIEIDTKLPVV 321 (372)
Q Consensus 249 ~~EN~lD~~H~~~vH~~~~g~~~~--~~~~~~~-v~~~~~~gf~--~~~~~~~--~~~~~f~~P~~~~~~~~~~~~~p~~ 321 (372)
++||++|+||++++|+++.+.... ......+ +...+...+. ....+.. .....|+.|+++++.+.... .
T Consensus 172 ~~EN~~D~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~----~ 247 (386)
T 2zyl_A 172 IIDNVTDMAHFFYIHFGLPTYFKNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRY----G 247 (386)
T ss_dssp GGGGGGCSTHHHHTTCEEEEEEEEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEEE----T
T ss_pred HhhhcccccchhhhCcCccccccccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeecc----C
Confidence 999999999999999987542110 0000000 0000000010 0011111 22467889998765433221 1
Q ss_pred ccceEEEEEEeeeccCCCCCceeEEeeccce
Q 017387 322 GDQKWIIWICSFNVPMAPGKTRSIVCSARNF 352 (372)
Q Consensus 322 g~~~~~~~~~~~~tP~~~~~tr~~~~~~rnf 352 (372)
| ......+++.++|+++++|++++.+++++
T Consensus 248 g-~~~~~~~~~~~~Pv~~~~t~~~~~~~~~~ 277 (386)
T 2zyl_A 248 N-YKSESILINCHYPVTQNSFVLQWGVIVEK 277 (386)
T ss_dssp T-EEEEEEEEEEEEEEETTEEEEEEEEEEBC
T ss_pred C-cceeEEEEEEEEEccCCEEEEEEEEEEec
Confidence 2 11122344566899999999999887766
No 3
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=1.6e-41 Score=344.95 Aligned_cols=262 Identities=21% Similarity=0.290 Sum_probs=183.2
Q ss_pred ccccCCccccccCC--CCCCCceeecccceeeeeeccCCCCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCC
Q 017387 68 KEDYGSLVDDEYGK--ESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSE 145 (372)
Q Consensus 68 ~v~~~~Y~d~~~~~--~e~~~~f~~~~~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~ 145 (372)
++|.+ +|+++++ .|++.+| ++.|++||+++||++|+++.++++|++|||+|. +|+++|+.|+|||||++|+.
T Consensus 20 ~~p~~--~~~~~~~~~~e~~~if--~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r~--~G~v~a~~n~CpHrga~L~~ 93 (446)
T 1z01_A 20 RANNA--KTQSQYQPYKDAAWGF--INHWYPALFTHELEEDQVQGIQICGVPIVLRRV--NGKVFALKDQCLHRGVRLSE 93 (446)
T ss_dssp SSSCH--HHHGGGHHHHHCTTCB--CSEEEEEEEGGGSCBTCEEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCGGG
T ss_pred cCCcc--cCHHHhhhhhhhhhhh--hhceEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCEEEEEeCcCCCCcCCCCC
Confidence 44555 7899998 7777655 999999999999988999999999999999996 89999999999999999999
Q ss_pred Ccc-CCCCceeeeeeceeecC-CCcccccCccccCCcccccccCcccccccCCceeecceEEEecCCcc-----hhhhcc
Q 017387 146 GRI-DENGHLQCSYHGWSFDG-CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG-----QERANA 218 (372)
Q Consensus 146 G~v-~~~~~i~CPyHGw~Fd~-dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~-----~~~~~~ 218 (372)
|.+ +.++.|+||||||+||+ +|+|+.+|+.+.. ..+.+.+|++|+|++++|+||||+++++ .+.+.+
T Consensus 94 g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~------~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~~ 167 (446)
T 1z01_A 94 KPTCFTKSTISCWYHGFTFDLETGKLVTIVANPED------KLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLAH 167 (446)
T ss_dssp SCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTC------TTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGGG
T ss_pred CccCCCCCEEEeCCCCeEEeCCCCCccccCCCccc------cCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChhH
Confidence 974 34689999999999998 9999999865321 1235678999999999999999998642 111222
Q ss_pred CCCCCCCC--------------CCCCCCcceEEEeeeccchhhhhhccCCCCCcccccccccccCccCCCCCCe------
Q 017387 219 TKPPMLPD--------------AFDKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPF------ 278 (372)
Q Consensus 219 ~~~p~~p~--------------~~~~~~~~~~~~~~~~~~nwk~~~EN~lD~~H~~~vH~~~~g~~~~~~~~~~------ 278 (372)
.+++.+++ .+.+.++.......+++||||+++||++|+||+ ++|+++++..+......+
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~~~ 246 (446)
T 1z01_A 168 DLPFRFPERSEQFPHPLWPSSPSVLDDNAVVHGMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLPTS 246 (446)
T ss_dssp GSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEEEEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEECS
T ss_pred hccchhhhhhhccccccccccccccCCCeEEEeEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccccC
Confidence 23222221 122334443334567999999999999999999 999998764332211111
Q ss_pred -------eecccCccccccC-------------------CCCC-CeeEEeeeccceeeeeeeecccCcccccceEEEEEE
Q 017387 279 -------KLESSGHWGFAGA-------------------NDGN-PRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWIC 331 (372)
Q Consensus 279 -------~v~~~~~~gf~~~-------------------~~~~-~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~~~ 331 (372)
+++ .+..|+... ..+. ....+.|..|++++... .| ... +.++
T Consensus 247 ~~~~~~~~~~-~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~-----~p--~~~---~~~~ 315 (446)
T 1z01_A 247 DDCIAVVEDD-DGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVEN-----WP--EEH---VVQY 315 (446)
T ss_dssp TTSEEEECCS-SSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEET-----CS--STT---CEEE
T ss_pred CCceeEEEec-CCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEec-----cC--CCC---eEEE
Confidence 111 011121000 0011 11345667888764321 01 111 2334
Q ss_pred eeeccCCCCCceeEEeecccee
Q 017387 332 SFNVPMAPGKTRSIVCSARNFF 353 (372)
Q Consensus 332 ~~~tP~~~~~tr~~~~~~rnf~ 353 (372)
..++|+++++|++++.++|++.
T Consensus 316 ~~~~Pi~~~~t~~~~~~~~~~~ 337 (446)
T 1z01_A 316 EWYVPITDDTHEYWEILVRVCP 337 (446)
T ss_dssp EEEEESSSSEEEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEEEecCCC
Confidence 5569999999999998888764
No 4
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=1.1e-42 Score=349.64 Aligned_cols=192 Identities=17% Similarity=0.217 Sum_probs=156.4
Q ss_pred ccccccCCccccccCCCCCCCceeecccceeeeeeccCC-CCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCC
Q 017387 66 DEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS 144 (372)
Q Consensus 66 ~~~v~~~~Y~d~~~~~~e~~~~f~~~~~W~~V~~~~eL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls 144 (372)
...+|.++|+|++++++|++++| ++.|++||+++||+ +|++++++++|++|+|+|+ .+|+++||.|+|||||++|+
T Consensus 16 ~~~lp~~~Y~d~~~~~~E~~~if--~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~-~dG~v~A~~n~C~Hrga~L~ 92 (409)
T 3n0q_A 16 GHALDQAFYTDAEVFQTDLQEIF--YKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRG-ADNVIRAFHNACRHRGSVIC 92 (409)
T ss_dssp TBCCCHHHHHCHHHHHHHHHHTT--TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESCCTTTCCCSC
T ss_pred cccCCHHHcCCHHHHHHHHHHHH--hcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEc-CCCCEEeecCcCCcCcCCcc
Confidence 45789999999999999998877 99999999999998 5999999999999999999 89999999999999999999
Q ss_pred C-CccCCCCceeeeeeceeecCCCcccccCccccCCcccccccCcccccccCCceeecceEEEecCCcchhhhccCCC--
Q 017387 145 E-GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKP-- 221 (372)
Q Consensus 145 ~-G~v~~~~~i~CPyHGw~Fd~dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~~~~~~~~~~-- 221 (372)
. |.+. ++.|+||||||+||++|+|+.+|..... .++++.+|++|+|++++|+|||++++++.+ +++.+.
T Consensus 93 ~~g~~~-~~~i~CpyHgw~fd~dG~~~~~P~~~~~------~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~~-l~~~l~~~ 164 (409)
T 3n0q_A 93 KAKKGN-NPKLVCPYHQWTYELDGRLLWARDMGPD------FEPSRHGLKTVHCRELAGLIYICLADEAPD-FERFAEVA 164 (409)
T ss_dssp CSSEEE-CSSEECTTTCCEECTTSCEEECTTCCTT------CCGGGCSCCEEEEEEETTEEEEECSSSCCC-CHHHHHHH
T ss_pred CcCccC-CCEEEECCCCCEEeCCCCcccCCcCCcc------cCcccCCCceEEEEEECCEEEEEeCCCCCC-hHHhhhhh
Confidence 6 6664 6799999999999999999999965321 124577899999999999999999886521 111111
Q ss_pred -CCCCCCCCCCCcceE-EEeeeccchhhhhhccCCCCCcccccccccccC
Q 017387 222 -PMLPDAFDKPEFSSV-TIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGR 269 (372)
Q Consensus 222 -p~~p~~~~~~~~~~~-~~~~~~~~nwk~~~EN~lD~~H~~~vH~~~~g~ 269 (372)
+.+. .++..++... ...++++||||+++||++|+||++++|+++++.
T Consensus 165 ~~~l~-~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~ 213 (409)
T 3n0q_A 165 RPYLE-VHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRT 213 (409)
T ss_dssp HHHHH-TTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGT
T ss_pred hhhhc-cccCCCeEEeeEEEEEEecchHhhhhhccccccccccCcchhhc
Confidence 1111 1222233322 234678999999999999999999999998764
No 5
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=5e-41 Score=333.44 Aligned_cols=188 Identities=22% Similarity=0.408 Sum_probs=150.2
Q ss_pred CCCCCCceeecccceeeeeeccCCCCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCCCcc-CCCCceeeeee
Q 017387 81 KESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRI-DENGHLQCSYH 159 (372)
Q Consensus 81 ~~e~~~~f~~~~~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G~v-~~~~~i~CPyH 159 (372)
+...|..++|++.|++||.++||++|+++.++++|++|+|+|. +|+++|+.|+|||||++|+.|.+ ..++.|+||||
T Consensus 22 ~~yLE~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R~--dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyH 99 (394)
T 3gcf_A 22 PRYLEATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTRA--KGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYH 99 (394)
T ss_dssp HHHHHCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTT
T ss_pred hhhhhhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCC
Confidence 3334445566999999999999999999999999999999996 99999999999999999999974 23679999999
Q ss_pred ceeecC-CCcccccCccccCCcccccccCcccccccCCceeecceEEEecCCcchhhhccCCCCCCCCCCCCCCcceEEE
Q 017387 160 GWSFDG-CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTI 238 (372)
Q Consensus 160 Gw~Fd~-dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 238 (372)
||+||+ +|+|+.+|..+... .+.+.+|++|+|++++|+|||++++++.+.+.+ .+++.+.+.++.....
T Consensus 100 GW~Fdl~dG~cv~iP~~p~~~------~~~~~~L~~ypV~e~~G~VfV~lgd~~~ppL~e----~L~~~~~d~~~~~~~~ 169 (394)
T 3gcf_A 100 GWTYDLDDGRLVDVLTSPGSP------VIGKIGIKVYPVQVAQGVVFVFIGDEEPHALSE----DLPPGFLDEDTHLLGI 169 (394)
T ss_dssp CEEEETTTCBEEEETTSTTCT------TTTSCBCCEECEEEETTEEEEEESSSCCCCGGG----GSCTTTTCTTEEEEEE
T ss_pred CcEEECCCCceeccCCCcccc------cccccCceEEEEEEECCcEEEecCCCCCCCchh----hcchhhcCCceEEEeE
Confidence 999999 89999999754321 235678999999999999999997643222222 2333455556665555
Q ss_pred eeeccchhhhhhccCCCCCcccccccccccCccCCCCCCeeec
Q 017387 239 QRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLE 281 (372)
Q Consensus 239 ~~~~~~nwk~~~EN~lD~~H~~~vH~~~~g~~~~~~~~~~~v~ 281 (372)
..+++||||+++||++|.||+ ++|+++++..+...+.++.+.
T Consensus 170 ~~~i~~NWK~~~EN~lD~yH~-~vH~~ti~~~~~~~~~~~~~~ 211 (394)
T 3gcf_A 170 RRTVQSNWRLGVENGFDTTHI-FMHRNSPWVSGNRLAFPYGFV 211 (394)
T ss_dssp EEEESSCHHHHHHHHSCSSGG-GGGTTCHHHHHTTBCCCSEEE
T ss_pred EEEEecCchhhHhhccccchh-hCchhhhcccccccccCccee
Confidence 678999999999999999999 999999987655555555443
No 6
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=1.6e-42 Score=348.63 Aligned_cols=192 Identities=14% Similarity=0.156 Sum_probs=156.2
Q ss_pred ccccccCCccccccCCCCCCCceeecccceeeeeeccCC-CCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCC
Q 017387 66 DEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS 144 (372)
Q Consensus 66 ~~~v~~~~Y~d~~~~~~e~~~~f~~~~~W~~V~~~~eL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls 144 (372)
...+|.++|+|++++++|++++| ++.|++||+++||+ +|+++.++++|++|+|+|+ .+|+++|+.|+|||||++|+
T Consensus 18 ~~~lp~~~Y~d~~~~~~E~~~if--~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~-~dG~v~A~~n~CpHrga~L~ 94 (412)
T 3vca_A 18 GFSLEQPFYTSPEVYALDLQHIF--YKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRS-RDGEVRAFHNSCRHRGSLIC 94 (412)
T ss_dssp TBCCCHHHHHCHHHHHHHHHHTT--TTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCSC
T ss_pred cCcCCHHHcCCHHHHHHHHHHHH--hccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEc-CCCCEEEecccCCCCCCEee
Confidence 46789999999999999998877 89999999999998 5999999999999999999 89999999999999999998
Q ss_pred -CCccCCCCceeeeeeceeecCCCcccccCccccCCcccccccCcccccccCCceeecceEEEecCCcchhhhccCCCC-
Q 017387 145 -EGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPP- 222 (372)
Q Consensus 145 -~G~v~~~~~i~CPyHGw~Fd~dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~~~~~~~~~~p- 222 (372)
.|.+. ++.|+||||||+||++|+|+.+|..... .++++.+|++|+|++++|+|||++++++.+ .++.+.+
T Consensus 95 ~~g~~~-~~~i~CPyHgw~fdldG~~~~~P~~~~~------~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~-l~~~l~~~ 166 (412)
T 3vca_A 95 KARQGQ-VAKLVCPYHQWTYELDGKLIWANDMGPD------FDASKYGLKPVNLRNLDGLIYICLSDTPPD-FQTFAQLA 166 (412)
T ss_dssp CSSEEE-CSSEECTTTCCEECTTSCEEECTTCCTT------CCGGGCSCCEEEEEEETTEEEEECSSSCCC-CHHHHHHH
T ss_pred cccccC-CCEEEcCCCCCEEcCCCccccCCccccc------cCcccCCCcEEEEEEECCEEEEEecCCCCC-HHHHhhhh
Confidence 67765 6799999999999999999999965321 124567899999999999999999876521 1111111
Q ss_pred --CCCCCCCCCCcceE-EEeeeccchhhhhhccCCCCCcccccccccccC
Q 017387 223 --MLPDAFDKPEFSSV-TIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGR 269 (372)
Q Consensus 223 --~~p~~~~~~~~~~~-~~~~~~~~nwk~~~EN~lD~~H~~~vH~~~~g~ 269 (372)
.+. .++..++... ...++++||||+++||++|+||++++|+++++.
T Consensus 167 ~~~l~-~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~ 215 (412)
T 3vca_A 167 RPYLE-VHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRS 215 (412)
T ss_dssp HHHHH-TTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTT
T ss_pred HHhhc-cccCCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhc
Confidence 111 1222223221 235678999999999999999999999998763
No 7
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=2.5e-40 Score=330.80 Aligned_cols=169 Identities=23% Similarity=0.422 Sum_probs=139.0
Q ss_pred eecccceeeeeeccCCCCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCCCccC-CCCceeeeeeceeecC-C
Q 017387 89 SWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRID-ENGHLQCSYHGWSFDG-C 166 (372)
Q Consensus 89 ~~~~~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G~v~-~~~~i~CPyHGw~Fd~-d 166 (372)
.|++.|++||+++||++|+++.++++|++|+|+|+ +|+++|+.|+|||||++|+.|.+. .++.|+||||||+||+ +
T Consensus 24 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~--~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~~~~ 101 (392)
T 2de6_A 24 GFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI--DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWED 101 (392)
T ss_dssp CBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTT
T ss_pred hhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEcCCC
Confidence 45999999999999988999999999999999996 899999999999999999999863 3579999999999998 9
Q ss_pred CcccccCccccCCcccccccCcccccccCCceeecceEEEecCCcchhhhccCCCCCCCCCCCCCCcceEEEeeeccchh
Q 017387 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQRDLFYGY 246 (372)
Q Consensus 167 G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~nw 246 (372)
|+|+.+|+.+.. ..+++.+|++|+|++++|+|||++++++.+.+. +.+++++.+.++.......+++|||
T Consensus 102 G~~~~~p~~p~~------~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~l~----~~l~~~~~~~~~~~~~~~~~~~~nw 171 (392)
T 2de6_A 102 GVLCDILTNPTS------AQIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLA----RDTPPNFLDDDMEILGKNQIIKSNW 171 (392)
T ss_dssp CBEEEETTCTTC------TTTTSCBCCBCCEEEETTEEEEEESSSSCCCGG----GGSCTTTTCTTEEEEEEEEEESSCH
T ss_pred CccccccCCccc------cccccCCCceEeEEEECCEEEEEeCCCCCCChh----HhccccccCCCeEEEEEEEEEecCh
Confidence 999999875431 124567899999999999999999764321122 1232245555665544456899999
Q ss_pred hhhhccCCCCCcccccccccccCc
Q 017387 247 DTLMENVSDPSHIDFAHHKVTGRR 270 (372)
Q Consensus 247 k~~~EN~lD~~H~~~vH~~~~g~~ 270 (372)
|+++||++|+||+ ++|+++++..
T Consensus 172 k~~~EN~~D~~H~-~~H~~~~~~~ 194 (392)
T 2de6_A 172 RLAVENGFDPSHI-YIHKDSILVK 194 (392)
T ss_dssp HHHHHHHHCGGGG-GGGTTCHHHH
T ss_pred HhhhHhcchhhhh-hhhcchhccc
Confidence 9999999999999 9999987643
No 8
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=1e-39 Score=323.32 Aligned_cols=176 Identities=24% Similarity=0.407 Sum_probs=142.9
Q ss_pred CCCCceeecccceeeeeeccCCCCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCCCcc-CCCCceeeeeece
Q 017387 83 SSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRI-DENGHLQCSYHGW 161 (372)
Q Consensus 83 e~~~~f~~~~~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G~v-~~~~~i~CPyHGw 161 (372)
|++.+ |++.|++||+++||++|+++.++++|++|+|+|. +|+++|+.|+|||||++|+.|.+ ..++.|+||||||
T Consensus 23 E~e~i--f~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R~--dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW 98 (389)
T 3gkq_A 23 DAKLG--FRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNRV--DGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGW 98 (389)
T ss_dssp HCTTC--BSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCE
T ss_pred hhhhh--hcCccEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCC
Confidence 44444 4999999999999999999999999999999995 89999999999999999999973 2367999999999
Q ss_pred eecC-CCcccccCccccCCcccccccCcccccccCCceeecceEEEecCCcchhhhccCCCCCCCCCCCCCCcceEEEee
Q 017387 162 SFDG-CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQR 240 (372)
Q Consensus 162 ~Fd~-dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 240 (372)
+||+ +|+|+.+|..+... .+.+.+|++|+|++++|+|||++++++.+.+.+ .+++.+.+.++.......
T Consensus 99 ~Fdl~dG~cv~iP~~P~~~------~~~~~~L~~ypV~e~~G~VfV~lgd~~~ppL~e----~l~~~~~~~~~~~~~~~~ 168 (389)
T 3gkq_A 99 TYRWDNGKLVDILTNPTSV------QIGRHALKTYPVREEKGLVFLFVGDQEPHDLAE----DVPPGFLDADLAVHGQHR 168 (389)
T ss_dssp EEETTTCBEEEETTCTTCT------TTTSCBCCBCCEEEETTEEEEEESSSCCCCGGG----GSCTTTTCTTEEEEEEEE
T ss_pred EEECCCCCeecccCCcccc------cccccCCcEEEEEEECCeEEEecCCCCCCCchh----hcchhccCCceEEEeEEE
Confidence 9999 89999999754321 235678999999999999999997543212222 233345555666555567
Q ss_pred eccchhhhhhccCCCCCcccccccccccCccCC
Q 017387 241 DLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRA 273 (372)
Q Consensus 241 ~~~~nwk~~~EN~lD~~H~~~vH~~~~g~~~~~ 273 (372)
+++||||+++||++|+||+ ++|+++++..+..
T Consensus 169 ~i~~NWK~~~EN~lD~yH~-~vH~~si~~~~~~ 200 (389)
T 3gkq_A 169 VVDANWRMGVENGFDAGHV-FIHKSSILLDGND 200 (389)
T ss_dssp EESSCHHHHHHHHTCSGGG-GGGTTCHHHHHTT
T ss_pred EEecCchhhHHhcchhchh-hCccccccccccc
Confidence 8999999999999999999 9999998754433
No 9
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=5.1e-41 Score=341.47 Aligned_cols=197 Identities=14% Similarity=0.156 Sum_probs=158.2
Q ss_pred cccccCCccccccCCCCCCCceeecccceeeeeeccCC-CCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCC
Q 017387 67 EKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSE 145 (372)
Q Consensus 67 ~~v~~~~Y~d~~~~~~e~~~~f~~~~~W~~V~~~~eL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~ 145 (372)
.++|.++|+|++++++|++++| .+.|++||+++||+ +|++++++++|++|+|+|+ .+|+++||.|+|||||++|+.
T Consensus 33 ~~~~~~~Ytd~~~~~~E~~~if--~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~-~dG~v~A~~n~C~Hrga~L~~ 109 (457)
T 3gzx_A 33 GKLDARIYADQDLYQLELERVF--GRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQ-KDQSIKVFLNQCRHRGMRIVR 109 (457)
T ss_dssp TEEEGGGGTCHHHHHHHHHHTT--TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESCCTTTCCCSCC
T ss_pred CcCCHHHcCCHHHHHHHHHHHH--hcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEEC-CCCeEEEEeCcCCCCCcCccC
Confidence 4689999999999999999887 99999999999997 5999999999999999999 899999999999999999999
Q ss_pred CccCCCCceeeeeeceeecCCCcccccCccccCCc----ccccccCcccccccCCceeecceEEEecCCcchhhhccCCC
Q 017387 146 GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGP----EARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKP 221 (372)
Q Consensus 146 G~v~~~~~i~CPyHGw~Fd~dG~c~~iP~~~~~~~----~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~~~~~~~~~~ 221 (372)
|..+.++.|+||||||+||++|+|+.+|......+ ....+++.+.+|++|+|++++|+||||+++++. .++++++
T Consensus 110 g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~ap-~l~e~lg 188 (457)
T 3gzx_A 110 SDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAP-DLKTYLS 188 (457)
T ss_dssp SSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTSC-CHHHHTT
T ss_pred CCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCCC-ChHHHHh
Confidence 87544679999999999999999999998642111 000012456789999999999999999998753 2334443
Q ss_pred CCCCCCC----CC--CCcceE--EEeeeccchhhhhhccC-CCCCccc-cccccccc
Q 017387 222 PMLPDAF----DK--PEFSSV--TIQRDLFYGYDTLMENV-SDPSHID-FAHHKVTG 268 (372)
Q Consensus 222 p~~p~~~----~~--~~~~~~--~~~~~~~~nwk~~~EN~-lD~~H~~-~vH~~~~g 268 (372)
+ +...+ +. .++..+ ...+.++||||+++||+ +|+||++ ++|.++++
T Consensus 189 ~-~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~ 244 (457)
T 3gzx_A 189 D-AMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVL 244 (457)
T ss_dssp T-CHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHH
T ss_pred h-hHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhh
Confidence 2 21111 11 123333 23467899999999999 8999999 99998764
No 10
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=2.2e-40 Score=336.50 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=156.4
Q ss_pred cccc-cCCccccccCCCCCCCceeecccceeeeeeccCC-CCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCC
Q 017387 67 EKED-YGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS 144 (372)
Q Consensus 67 ~~v~-~~~Y~d~~~~~~e~~~~f~~~~~W~~V~~~~eL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls 144 (372)
.++| .++|+|++++++|++.+| .+.|++||+++||+ +|+++.++++|++|+|+|+ .+|+++||.|+|||||++|+
T Consensus 11 ~~~~~~~~y~~~~~~~~E~~~if--~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~-~~G~v~a~~n~CpHrga~L~ 87 (447)
T 2bmo_A 11 GLTQKLLIHGDKELFQHELKTIF--ARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQ-NDGSVRAFLNVCRHRGKTLV 87 (447)
T ss_dssp GCEEEGGGGTCHHHHHHHHHHTT--TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESBCTTTCCBCC
T ss_pred CCCCccceeCCHHHHHHHHHHhh--ccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEEC-CCCCEEEEeccCcCCCCCcc
Confidence 4788 999999999999998877 89999999999998 5999999999999999998 89999999999999999999
Q ss_pred CCccCCCCceeeeeeceeecCCCcccccCccccCCcccccccCcccccccCC-ceeecceEEEecCCcchhhhccCCCCC
Q 017387 145 EGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFP-TMVSQGLLFVWPDEYGQERANATKPPM 223 (372)
Q Consensus 145 ~G~v~~~~~i~CPyHGw~Fd~dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~p-v~e~~G~I~V~~~~~~~~~~~~~~~p~ 223 (372)
.|.++.++.|+||||||+||++|+|+.+|......+. .+++.+.+|++|+ |++++|+|||++++++. ..++++++
T Consensus 88 ~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~--~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~-~l~~~l~~- 163 (447)
T 2bmo_A 88 HAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGD--AIKKKCLGLKEVPRIESFHGFIYGCFDAEAP-PLIDYLGD- 163 (447)
T ss_dssp CSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGG--GCCGGGCCCCBCSEEEEETTEEEEESCTTCC-CHHHHHTT-
T ss_pred ccccCCcCeEECCCCcchhcCCCcccccCcccccccc--cCCHhHCCCcccceEEEECCEEEEEcCCCCC-CHHHHhcc-
Confidence 9987546799999999999999999999975421110 1234567899998 99999999999987642 22222221
Q ss_pred CCCCC----C-CCCcceE--EEeeeccchhhhhhccC-CCCCccccccccccc
Q 017387 224 LPDAF----D-KPEFSSV--TIQRDLFYGYDTLMENV-SDPSHIDFAHHKVTG 268 (372)
Q Consensus 224 ~p~~~----~-~~~~~~~--~~~~~~~~nwk~~~EN~-lD~~H~~~vH~~~~g 268 (372)
+...+ + ..++..+ ....+++||||+++||+ +|+||++++|..+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~ 216 (447)
T 2bmo_A 164 AAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALR 216 (447)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred HHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhh
Confidence 10001 1 2234433 23468899999999999 799999999977665
No 11
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=9.8e-40 Score=332.38 Aligned_cols=195 Identities=15% Similarity=0.254 Sum_probs=155.9
Q ss_pred cccccCCccccccCCCCCCCceeecccceeeeeeccCC-CCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCC
Q 017387 67 EKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSE 145 (372)
Q Consensus 67 ~~v~~~~Y~d~~~~~~e~~~~f~~~~~W~~V~~~~eL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~ 145 (372)
.++|.++|+|++++++|++.+| .+.|++||+++||+ +|+++.+.++|++|+|+|+ .+|+++|+.|+|||||++|+.
T Consensus 13 ~~~~~~~y~~~~~~~~E~~~if--~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~-~~G~v~a~~n~CpHrga~L~~ 89 (454)
T 2gbw_A 13 ASQSRQVFWDEDVYALEIERIF--SRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQ-SDGTFRAFINSCSHRGNQICH 89 (454)
T ss_dssp TEEEGGGGTCHHHHHHHHHHTT--TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCSCC
T ss_pred CccCHHHcCCHHHHHHHHHHHh--hcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEc-CCCCEEEEeccCCCCCCCCcc
Confidence 4789999999999999998877 89999999999998 5999999999999999999 899999999999999999999
Q ss_pred CccCCCCceeeeeeceeecCCCcccccCccccCCcccccccCcccccccCCceeecceEEEecCCcchhhhccCCCCCCC
Q 017387 146 GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLP 225 (372)
Q Consensus 146 G~v~~~~~i~CPyHGw~Fd~dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~~~~~~~~~~p~~p 225 (372)
|..+.++.|+||||||+||++|+|+.+|......+. .+++.+.+|++|+|++++|+|||++++++. ..++++++ +.
T Consensus 90 g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~--~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p-~~~~~l~~-~~ 165 (454)
T 2gbw_A 90 ADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHN--SLDKQKLAAKSVRVETYKGFIFGCHDPEAP-SLEDYLGE-FR 165 (454)
T ss_dssp CSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTT--CCCGGGCCCCEEEEEEETTEEEEECCTTCC-CHHHHHGG-GH
T ss_pred cccCCcCEEEeCCCCCEecCCCCcccCCcccccccc--cCCHhhCCCeeEEEEEECCEEEEEeCCCCC-CHHHHhhh-hH
Confidence 887546799999999999999999999976432110 122456789999999999999999987642 12222211 10
Q ss_pred CC----CCC--CCcceE--EEeeeccchhhhhhccC-CCCCccccccccccc
Q 017387 226 DA----FDK--PEFSSV--TIQRDLFYGYDTLMENV-SDPSHIDFAHHKVTG 268 (372)
Q Consensus 226 ~~----~~~--~~~~~~--~~~~~~~~nwk~~~EN~-lD~~H~~~vH~~~~g 268 (372)
.. ++. .++..+ ....+++||||+++||+ +|+||++++|+.+++
T Consensus 166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 166 YYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp HHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred HHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 01 111 223332 23467899999999999 799999999977654
No 12
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=4.9e-39 Score=328.59 Aligned_cols=197 Identities=14% Similarity=0.218 Sum_probs=155.3
Q ss_pred ccccccCCccccccCCCCCCCceeecccceeeeeeccCCC-CCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCC
Q 017387 66 DEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS 144 (372)
Q Consensus 66 ~~~v~~~~Y~d~~~~~~e~~~~f~~~~~W~~V~~~~eL~~-g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls 144 (372)
..++|.++|+|++++++|++.+| .+.|++||+++||++ |+++.++++|++|+|+|+ .+|+++||.|+|||||++|+
T Consensus 20 ~~~lp~~~Ytd~~~~~~E~~~if--~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~-~~G~v~a~~n~C~Hrga~L~ 96 (470)
T 2b1x_A 20 DWTVPAAIINDPEVHDVERERIF--GHAWVFLAHESEIPERGDYVVRYISEDQFIVCRD-EGGEIRGHLNACRHRGMQVC 96 (470)
T ss_dssp TCEEEGGGSSCHHHHHHHHHHTT--TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCSC
T ss_pred CCcCCHHHcCCHHHHHHHHHHHh--hcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEc-CCCCEEEEecccCCCCCEee
Confidence 56899999999999999998877 999999999999985 899999999999999998 89999999999999999999
Q ss_pred CCccCCCCceeeeeeceeecCCCcccccCccccCCcccccccCcccccccC-CceeecceEEEecCCcchhhhccCCCCC
Q 017387 145 EGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRF-PTMVSQGLLFVWPDEYGQERANATKPPM 223 (372)
Q Consensus 145 ~G~v~~~~~i~CPyHGw~Fd~dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~-pv~e~~G~I~V~~~~~~~~~~~~~~~p~ 223 (372)
.|.+++.+.|+||||||+||++|+|+.+|......+. .+++.+.+|..+ .|++++|+|||++++++. ..++++.+.
T Consensus 97 ~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~--~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~-~~~~~l~~~ 173 (470)
T 2b1x_A 97 RAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGN--QLKKSDWNLRPMPNLASYKGLIFGSLDPHAD-SLEDYLGDL 173 (470)
T ss_dssp CSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTT--CCCGGGGSCCBCSEEEEETTEEEEESCTTCC-CHHHHHGGG
T ss_pred ccCcCCCCEEEECCCCCeecCCCceeecCcccccccc--cCCHhhCCCcccceEEEECCEEEEEeCCCCC-CHHHHhcch
Confidence 9988644789999999999999999999975432110 122456778888 577789999999987642 122222210
Q ss_pred CC--C---CCCCCCcceE--EEeeeccchhhhhhccC-CCCCccccccccccc
Q 017387 224 LP--D---AFDKPEFSSV--TIQRDLFYGYDTLMENV-SDPSHIDFAHHKVTG 268 (372)
Q Consensus 224 ~p--~---~~~~~~~~~~--~~~~~~~~nwk~~~EN~-lD~~H~~~vH~~~~g 268 (372)
.. + +....++... ...++++||||+++||+ +|+||++++|+++++
T Consensus 174 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 174 KFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp HHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred hHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 00 0 0012233322 23457899999999999 999999999999764
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=6.4e-38 Score=319.57 Aligned_cols=193 Identities=15% Similarity=0.191 Sum_probs=153.4
Q ss_pred cccccCCccccccCCCCCCCceeecccceeeeeeccCCC-CCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCC
Q 017387 67 EKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSE 145 (372)
Q Consensus 67 ~~v~~~~Y~d~~~~~~e~~~~f~~~~~W~~V~~~~eL~~-g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~ 145 (372)
.++|.++|+|++++++|++.+| .+.|++||+++||++ |+++.+.++|++|+|+|+ .+|+++||.|+|||||++|+.
T Consensus 31 ~~~p~~~y~d~~~~~~E~~~if--~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~-~~G~v~a~~n~CpHrga~L~~ 107 (460)
T 1uli_A 31 GRLDPRIYTDEALYEQELERIF--GRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQ-KNGEIRVFLNQCRHRGMRICR 107 (460)
T ss_dssp TEECGGGGTCHHHHHHHHHHTT--TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESCCTTTCCCSCC
T ss_pred CcCCHHHcCCHHHHHHHHHHhh--hcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEc-CCCCEEEEeeeCCCCCCCCcc
Confidence 4789999999999999998877 999999999999984 888999999999999998 899999999999999999999
Q ss_pred CccCCCCceeeeeeceeecCCCcccccCccccCCcccccccCcccccccCCceeecceEEEecCCcchhhhccCCCCCCC
Q 017387 146 GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLP 225 (372)
Q Consensus 146 G~v~~~~~i~CPyHGw~Fd~dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~~~~~~~~~~p~~p 225 (372)
|..+.++.|+||||||+||++|+|+.+|......+. +++.+.+|++|+|++++|+|||++++++. .+++++++ +.
T Consensus 108 g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~---~~~~~~~L~~~~v~~~~G~V~v~~~~~~p-~l~~~l~~-~~ 182 (460)
T 1uli_A 108 ADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPG---LRKEDWGPLQARVETYKGLIFANWDADAP-DLDTYLGE-AK 182 (460)
T ss_dssp SSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTT---CCGGGSSCCEEEEEEETTEEEEECCTTSC-CHHHHHTT-HH
T ss_pred ccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCC---CCHhHcCCceeeEEEECCEEEEEeCCCCC-CHHHHhcc-hH
Confidence 987545799999999999999999999975421111 22456789999999999999999987643 22222221 11
Q ss_pred CC----CCC--CCcceE--EEeeeccchhhhhhccC-CCCCcc-cccccccc
Q 017387 226 DA----FDK--PEFSSV--TIQRDLFYGYDTLMENV-SDPSHI-DFAHHKVT 267 (372)
Q Consensus 226 ~~----~~~--~~~~~~--~~~~~~~~nwk~~~EN~-lD~~H~-~~vH~~~~ 267 (372)
.. ++. .++..+ ...++++||||+++||+ +|+||+ .++|...+
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 183 FYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp HHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred HHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 01 111 112221 22457899999999999 799999 69998655
No 14
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.94 E-value=7.6e-28 Score=198.55 Aligned_cols=102 Identities=21% Similarity=0.329 Sum_probs=93.1
Q ss_pred cceeeeeeccCCCCCCcchhhcccc-eEEEEeCCCCceEEcccCCCccccCCCCCccCCCCceeeeeeceeecC-CCccc
Q 017387 93 HWYPVSLVEDLDPNLPTAFQLLGRD-LVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCT 170 (372)
Q Consensus 93 ~W~~V~~~~eL~~g~~~~~~~~g~~-lvl~R~~~~G~v~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw~Fd~-dG~c~ 170 (372)
.|+.|+.++||++|+++.++++|++ |+|+|+ +|+++|++|+|||||++|+.|.++ ++.|+||||||+||+ +|+|+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fdl~tG~~~ 79 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV--DGEVFVTDNLCTHGNAMLTDGYQD-GTIIECPFHGGSFDIATGAAK 79 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE--TTEEEEEESBCSSSSCBGGGSEEE-TTEEECSSTTCEEETTTCCBC
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE--CCEEEEEeCcCCCCCCCCCCCEEe-CCEEEcCCCCCEEeCCCcCEe
Confidence 5999999999999999999999999 999997 899999999999999999999886 679999999999998 99999
Q ss_pred ccCccccCCcccccccCcccccccCCceeecceEEEecCCc
Q 017387 171 RIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (372)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~ 211 (372)
..|.. .+|++|+|++++|+|||+++++
T Consensus 80 ~~P~~--------------~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 80 AFPCQ--------------IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp STTCC--------------SCCCEECEEEETTEEEEECC--
T ss_pred CCCCC--------------CCccEEeEEEECCEEEEeCCCC
Confidence 87742 3589999999999999999865
No 15
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.94 E-value=8.5e-28 Score=197.61 Aligned_cols=102 Identities=22% Similarity=0.291 Sum_probs=94.2
Q ss_pred cceeeeeeccCCCCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCCCccCCCCceeeeeeceeecC-CCcccc
Q 017387 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTR 171 (372)
Q Consensus 93 ~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw~Fd~-dG~c~~ 171 (372)
+|+.|+.++||++|+++.++++|++|+|+|. +|+++|++|+|||||++|+.|.++ ++.|+||||||+||+ +|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fdl~~G~~~~ 77 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCNV--DGEFFAVQDTCTHGDWALSDGYLD-GDIVECTLHFGKFCVRTGKVKA 77 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEEE--TTEEEEEESBCSSSSCBGGGSEEE-TTEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE--CCEEEEEeCcCCCCCCCCcCcEEe-CCEEECCCCCCEEeCCCCCEeC
Confidence 5999999999999999999999999999996 899999999999999999999986 679999999999997 999998
Q ss_pred cCccccCCcccccccCcccccccCCceeecceEEEecCCc
Q 017387 172 IPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (372)
Q Consensus 172 iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~ 211 (372)
.|.. .+|++|+|++++|.|||++++.
T Consensus 78 ~P~~--------------~~L~~~~v~~~~g~v~v~~~~~ 103 (106)
T 3dqy_A 78 LPAC--------------KPIKVFPIKVEGDEVHVDLDNG 103 (106)
T ss_dssp TTCC--------------SCCCEECEEEETTEEEECGGGC
T ss_pred CCCC--------------CCccEEEEEEECCEEEEEcccc
Confidence 8752 3589999999999999999764
No 16
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.94 E-value=9e-28 Score=196.36 Aligned_cols=101 Identities=19% Similarity=0.337 Sum_probs=92.9
Q ss_pred ccceeeeeeccCCCCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCCCccCCCCceeeeeeceeecC-CCccc
Q 017387 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCT 170 (372)
Q Consensus 92 ~~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw~Fd~-dG~c~ 170 (372)
..|+.|+.++||++|+++.++++|++|+|+|. +|+++|++|+|||||++|+.|.++ ++.|+||||||+||+ +|+|+
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fd~~~G~~~ 78 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYEV--EGEIYATDNLCTHGSARMSDGYLE-GREIECPLHQGRFDVCTGKAL 78 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEEE--TTEEEEEESBCSSSSCBGGGSEEE-TTEEECTTTTCEEETTTCCEE
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEEE--CCEEEEECCcCCCCCCCCCCCeEe-CCEEECCCCCCEEeCCCCCEe
Confidence 36999999999999999999999999999996 899999999999999999999885 689999999999999 99999
Q ss_pred ccCccccCCcccccccCcccccccCCceeecceEEEecC
Q 017387 171 RIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPD 209 (372)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~ 209 (372)
..|.. .+|++|+|++++|.|||+++
T Consensus 79 ~~P~~--------------~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 79 CAPVT--------------QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp ETTCC--------------SCCCEECEEEETTEEEEECC
T ss_pred CCCCC--------------CCCCEEeEEEECCEEEEEcC
Confidence 87742 35899999999999999874
No 17
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.94 E-value=1.6e-27 Score=197.94 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=94.8
Q ss_pred ccceeeeeeccCCCCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCCC-ccCCCCceeeeeeceeecC-CCcc
Q 017387 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEG-RIDENGHLQCSYHGWSFDG-CGSC 169 (372)
Q Consensus 92 ~~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G-~v~~~~~i~CPyHGw~Fd~-dG~c 169 (372)
..|+.|+.++||++|+++.++++|++|+|+|+ +|+++|++|+|||||++|+.| .++ ++.|+||||||+||+ +|+|
T Consensus 4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~--~g~~~A~~n~CpH~g~~L~~g~~~~-~~~i~CP~Hg~~Fd~~tG~~ 80 (112)
T 1fqt_A 4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNV--DGELFATQDRCTHGDWSLSDGGYLE-GDVVECSLHMGKFCVRTGKV 80 (112)
T ss_dssp CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEE--TTEEEEEESBCTTSSCBSSTTCCEE-TTEEECTTTCCEEETTTCCE
T ss_pred cceEEeEeHHHCCCCCeEEEEECCEEEEEEEE--CCEEEEEECCCCCCCcCCCCCCEEc-CCEEECCCCCCEEeCCCCcE
Confidence 36999999999999999999999999999997 899999999999999999999 775 679999999999999 8999
Q ss_pred cccCccccCCcccccccCcccccccCCceeecceEEEecCCcc
Q 017387 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (372)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~ 212 (372)
+..|.. .+|++|+|++++|+|||+++++.
T Consensus 81 ~~~P~~--------------~~L~~~~v~~~~g~v~v~~~~~~ 109 (112)
T 1fqt_A 81 KSPPPC--------------EALKIFPIRIEDNDVLVDFEAGY 109 (112)
T ss_dssp EESSCC--------------SCCCBCCEEEETTEEEECTTCCB
T ss_pred eCCCCC--------------CCccEEEEEEECCEEEEEecccc
Confidence 988742 35899999999999999998653
No 18
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.94 E-value=1.7e-27 Score=197.35 Aligned_cols=103 Identities=21% Similarity=0.411 Sum_probs=93.8
Q ss_pred cceeeeeeccCCCCCCcchhh-cccceEEEEeCCCCceEEcccCCCccccCCCCCccCCCCceeeeeeceeecCC-Cccc
Q 017387 93 HWYPVSLVEDLDPNLPTAFQL-LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC-GSCT 170 (372)
Q Consensus 93 ~W~~V~~~~eL~~g~~~~~~~-~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw~Fd~d-G~c~ 170 (372)
.|+.|+.++||++|+++.+++ +|++|+|+|+ .+|+++|++|+|||||++|+.|.++ ++.|+||||||+||++ |+|+
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~-~~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fd~~tG~~~ 78 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNS-EEHGVKAYQAMCPHQEILLSEGSYE-GGVITCRAHLWTFNDGTGHGI 78 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEE-TTTEEEEEESBCSSSSCBGGGSEEE-TTEEECTTTCCEEETTTCBBS
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEe-CCCeEEEEeCcCCCCCcCCCCceEc-CCEEEcCCCCCEEeCCCccCC
Confidence 599999999999999999999 9999999998 7999999999999999999999886 6799999999999995 9999
Q ss_pred ccCccccCCcccccccCcccccccCCceeecceEEEecCCcc
Q 017387 171 RIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (372)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~ 212 (372)
. |. ...|++|+|++++|+|||++++++
T Consensus 79 ~-p~--------------~~~L~~~~v~~~~g~v~v~~~~~~ 105 (111)
T 1vm9_A 79 N-PD--------------DAALAEYPVEVKGDDIYVSTKGIL 105 (111)
T ss_dssp S-SS--------------SCBCCEECEEEETTEEEECCTTCC
T ss_pred C-CC--------------cCCcCEEEEEEECCEEEEeccCcC
Confidence 7 42 236899999999999999998653
No 19
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.94 E-value=1e-27 Score=200.24 Aligned_cols=105 Identities=25% Similarity=0.468 Sum_probs=94.6
Q ss_pred cccceeeeeeccCCCCCCcchhhccc-ceEEEEeCCCCceEEcccCCCccccCCCCCccCCCCceeeeeeceeecC-CCc
Q 017387 91 RDHWYPVSLVEDLDPNLPTAFQLLGR-DLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGS 168 (372)
Q Consensus 91 ~~~W~~V~~~~eL~~g~~~~~~~~g~-~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw~Fd~-dG~ 168 (372)
.+.|++|+.++||++|+++.++++|+ +|+|+|+ +|+++|++|+|||||++|+.|.+. ++.|+||||||+||+ +|+
T Consensus 2 ~~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~--~g~~~A~~n~CpH~g~~L~~g~~~-~~~i~CP~Hg~~Fdl~tG~ 78 (115)
T 2de6_D 2 NQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV--GDQFYATEDTCTHGIASLSEGTLD-GDVIECPFHGGAFNVCTGM 78 (115)
T ss_dssp --CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE--TTEEEEEESBCTTSSCBGGGSEEE-TTEEECTTTCCEEETTTCC
T ss_pred CcceEEeEEHHHCCCCCeEEEEECCccEEEEEEE--CCEEEEEeCCCCCCCCCCcCCEEe-CCEEECCCCCCEEcCCCcC
Confidence 36799999999999999999999999 9999997 899999999999999999999886 689999999999998 999
Q ss_pred ccccCccccCCcccccccCcccccccCCceeecceEEEecCCcc
Q 017387 169 CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (372)
Q Consensus 169 c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~ 212 (372)
|+..|.. .+|++|+|++++|+|||+++++.
T Consensus 79 ~~~~P~~--------------~~L~~~~v~~~~g~V~v~~~~~~ 108 (115)
T 2de6_D 79 PASSPCT--------------VPLGVFEVEVKEGEVYVAGEKKL 108 (115)
T ss_dssp EEETTCC--------------SCCCEEEEEESSSEEEEEEEEC-
T ss_pred EeCCCCc--------------CCCCEEEEEEECCEEEEecCCcc
Confidence 9988742 35899999999999999997653
No 20
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.94 E-value=5.3e-27 Score=200.18 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=93.8
Q ss_pred cceeeeeeccCCCCCCcchhhcccceEEEEeCCCC-ceEEcccCCCcccc-CCCCCccCC--C-CceeeeeeceeecC-C
Q 017387 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSN-KWVAFDDKCPHRLA-PLSEGRIDE--N-GHLQCSYHGWSFDG-C 166 (372)
Q Consensus 93 ~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G-~v~A~~n~CpHRga-~Ls~G~v~~--~-~~i~CPyHGw~Fd~-d 166 (372)
.|+.||.++||++|+++.++++|++|+|+|+ .+| +++|+.|+|||||+ +|+.|.+.+ + ..|+||||||+||+ +
T Consensus 3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 81 (130)
T 2jza_A 3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRP-RNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD 81 (130)
T ss_dssp SEEEEEETTTSCTTBCCEEEETTEEEEEEBC-SSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT
T ss_pred ceEEEEEHHHCCCCCeEEEEECCcEEEEEEE-CCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCC
Confidence 6999999999999999999999999999997 678 89999999999999 599998752 2 38999999999999 9
Q ss_pred CcccccCccccCCcccccccCcccccccCCceeecceEEEecCCcc
Q 017387 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (372)
Q Consensus 167 G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~ 212 (372)
|+|+..|. .+|++|+|++++|+|||++++++
T Consensus 82 G~~~~~P~---------------~~L~~~~v~v~~g~V~V~~~~~~ 112 (130)
T 2jza_A 82 GFCLEDGA---------------YSVAAYDTQVTNGNVQISIADSD 112 (130)
T ss_dssp CCBSSCCS---------------SCCBCCCEEESSSEEEEECCCCC
T ss_pred cCCCCCCc---------------CcceEEEEEEECCEEEEEeCCCC
Confidence 99998774 35899999999999999998765
No 21
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.93 E-value=5.6e-27 Score=197.59 Aligned_cols=103 Identities=25% Similarity=0.402 Sum_probs=93.1
Q ss_pred cceeeeeeccCCCCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCCC--ccCCCCceeeeeeceeecC-CCcc
Q 017387 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEG--RIDENGHLQCSYHGWSFDG-CGSC 169 (372)
Q Consensus 93 ~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G--~v~~~~~i~CPyHGw~Fd~-dG~c 169 (372)
.|++|+.++||++|+++.++++|++|+|+|+ +|+++|++|+|||||++|+.| .+. ++.|+||||||+||+ +|+|
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~--~g~~~A~~n~CpH~g~~L~~G~~~~~-~~~i~CP~Hg~~Fdl~tG~~ 86 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD--GDSVYAISNLCSHAEAYLDMGVFHAE-SLEIECPLHVGRFDVRTGAP 86 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE--TTEEEEEESBCSSSSCBGGGSEEETT-TTEEECTTTCCEEETTTCCE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE--CCEEEEEeCcCCCCCCCCCCCceeec-CCEEEcCCCCCEEcCCCccE
Confidence 5999999999999999999999999999997 899999999999999999999 775 689999999999997 9999
Q ss_pred cccCccccCCcccccccCcccccccCCceeecceEEEecCCcc
Q 017387 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (372)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~ 212 (372)
+..|.. .+|++|+|++++|.|||+++.+.
T Consensus 87 ~~~P~~--------------~~L~~~~v~v~~g~V~v~~~~~~ 115 (121)
T 3gce_A 87 TALPCV--------------LPVRAYDVVVDGTEILVAPKEAD 115 (121)
T ss_dssp EETTCC--------------SCCCBCCEEEETTEEEECCC---
T ss_pred eCCCCc--------------CCcceEEEEEECCEEEEEECccc
Confidence 988752 35899999999999999998764
No 22
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.93 E-value=5e-27 Score=195.16 Aligned_cols=101 Identities=18% Similarity=0.266 Sum_probs=91.7
Q ss_pred cceeeeeeccCCCCCCcchhhcccceEEEEeCCCC-ceEEcccCCCcccc-CCCCCccCC-CC--ceeeeeeceeecC-C
Q 017387 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSN-KWVAFDDKCPHRLA-PLSEGRIDE-NG--HLQCSYHGWSFDG-C 166 (372)
Q Consensus 93 ~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G-~v~A~~n~CpHRga-~Ls~G~v~~-~~--~i~CPyHGw~Fd~-d 166 (372)
.|+.|+.++||++|+++.++++|++|+|||+ .+| +++|++|+|||||+ +|+.|.+.+ ++ .|+||||||+||+ +
T Consensus 6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~t 84 (113)
T 2jo6_A 6 QWKDICKIDDILPETGVCALLGDEQVAIFRP-YHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSD 84 (113)
T ss_dssp CCEEEEETTTSCTTEEEEEEETTEEEEEEEC-SSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTT
T ss_pred hheEEeeHHHCCCCCeEEEEECCEEEEEEEE-CCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCC
Confidence 5999999999999999999999999999998 799 69999999999999 799998752 23 7999999999999 9
Q ss_pred CcccccCccccCCcccccccCcccccccCCceeecceEEEecC
Q 017387 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPD 209 (372)
Q Consensus 167 G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~ 209 (372)
|+|+..|. .+|++|+|++++|+|||+++
T Consensus 85 G~~~~~P~---------------~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 85 GLCMEDEQ---------------FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp TEETTTTT---------------TCCCEEEEEEETTEEEEECC
T ss_pred ccCCCCCc---------------ccccEEeEEEECCEEEEEcC
Confidence 99998773 35899999999999999985
No 23
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.93 E-value=5.9e-27 Score=197.10 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=88.9
Q ss_pred cccceeeeeeccCCCCCCcchhh-cccceEEEEeCCCCceEEcccCCCccccCCCCCccCC----CCceeeeeeceeecC
Q 017387 91 RDHWYPVSLVEDLDPNLPTAFQL-LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDE----NGHLQCSYHGWSFDG 165 (372)
Q Consensus 91 ~~~W~~V~~~~eL~~g~~~~~~~-~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G~v~~----~~~i~CPyHGw~Fd~ 165 (372)
.++|++||.++||++|..+.+.+ +|++|+|||+ .+|+++|++|+|||||++|+.|.+.+ +..|+||||||+||+
T Consensus 7 ~~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~-~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl 85 (119)
T 4aiv_A 7 IQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRL-DDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFAL 85 (119)
T ss_dssp EEEEEEEEEGGGSCTTCCEEEECTTSCEEEEEEC-TTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEET
T ss_pred ccceeEeeEHHHcCCCCceEEEEcCCcEEEEEEc-CCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeC
Confidence 35799999999999998888877 4799999998 79999999999999999998876532 235999999999997
Q ss_pred -CCcccccCccccCCcccccccCcccccccCCcee-ecceEEEecCC
Q 017387 166 -CGSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFVWPDE 210 (372)
Q Consensus 166 -dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e-~~G~I~V~~~~ 210 (372)
+|+|+..|. .+|++|||++ .+|.|||.+.+
T Consensus 86 ~tG~~~~~p~---------------~~l~~ypv~ve~dG~V~V~~~a 117 (119)
T 4aiv_A 86 DDGSCLDDPR---------------VSVPVYPARVTPEGRIQVARVA 117 (119)
T ss_dssp TTCBBSSCTT---------------CBCCEECEEECTTSEEEEEEEE
T ss_pred CCCcCcCCCC---------------CccceEEEEEEeCCEEEEecCC
Confidence 899997663 3589999985 48999998753
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.93 E-value=1e-27 Score=210.80 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=96.7
Q ss_pred cccceeeeeeccCCCCCCcchhhcccceEEEEeCCCCceEEcccCCCccccCCCCCccCC--C-CceeeeeeceeecC-C
Q 017387 91 RDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDE--N-GHLQCSYHGWSFDG-C 166 (372)
Q Consensus 91 ~~~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga~Ls~G~v~~--~-~~i~CPyHGw~Fd~-d 166 (372)
.+.|+.||.++||++|+++.++++|++|+|+|. +|+++|+.|+|||||++|+.|.+.+ + +.|+||||||+||+ +
T Consensus 14 ~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~--~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t 91 (157)
T 3d89_A 14 KYTSVCVGREEDIRKSERMTAVVHDREVVIFYH--KGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT 91 (157)
T ss_dssp CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEEE--TTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred CCceEEEEEHHHCCCCCeEEEEECCEEEEEEEE--CCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence 678999999999988899999999999999996 8999999999999999999998752 1 58999999999999 9
Q ss_pred Ccccc--c-CccccCCcccccccCcccccccCCceeecceEEEecCCcc
Q 017387 167 GSCTR--I-PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (372)
Q Consensus 167 G~c~~--i-P~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~~ 212 (372)
|+|+. + |......+ ...+...+|++|+|++++|+|||++++++
T Consensus 92 G~~~~~~i~P~~~~~~~---~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 92 GEGLYQSINPKDPSAKP---KWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp CEEEEEECCCC-----C---EEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred cCEEEeccCCCcccccc---ccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 99986 3 64211000 00123467999999999999999998754
No 25
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.93 E-value=5.7e-27 Score=196.93 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=94.4
Q ss_pred ccceeeeeeccCCCCCCcchhhcccceEEEEeCCCCceEEcccCCCcccc-CCCCCccCCC---CceeeeeeceeecC-C
Q 017387 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLA-PLSEGRIDEN---GHLQCSYHGWSFDG-C 166 (372)
Q Consensus 92 ~~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHRga-~Ls~G~v~~~---~~i~CPyHGw~Fd~-d 166 (372)
..|+.|+.++||++|+++.++++|++|+|||+ .+|+++|++|+|||||+ +|+.|.+.++ ..|+||||||+||+ +
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 82 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYI-PDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKS 82 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTT
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEe-cCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCC
Confidence 57999999999999999999999999999998 79999999999999999 8999988521 28999999999999 9
Q ss_pred CcccccCccccCCcccccccCcccccccCCceeecceEEEecCCc
Q 017387 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (372)
Q Consensus 167 G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~~~ 211 (372)
|+|+..|. .+|++|+|++++|.|||++++.
T Consensus 83 G~~~~~P~---------------~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 83 GQCLEDEA---------------HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp CBBSSCTT---------------CBCCEECEEESSSEEEEECCCC
T ss_pred CcCCCCCC---------------ceeeEEEEEEECCEEEEEeCCc
Confidence 99998773 2589999999999999999765
No 26
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.84 E-value=1.3e-21 Score=166.73 Aligned_cols=97 Identities=20% Similarity=0.285 Sum_probs=86.5
Q ss_pred cceeeeeeccCCCCCCcchhhcccceEEEEeCC--------------------------CCceEEcccCCCccccCCCCC
Q 017387 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNN--------------------------SNKWVAFDDKCPHRLAPLSEG 146 (372)
Q Consensus 93 ~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~--------------------------~G~v~A~~n~CpHRga~Ls~G 146 (372)
.|..| ..++|++|+.+.+.+.|++|+|+|. . +|+++|+.|+|||+|++|+.|
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~-~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g 82 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHR-TKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIAN 82 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEEC-CHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEET
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEEC-CHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeecccc
Confidence 56777 8999999999999999999999995 4 899999999999999999999
Q ss_pred ccCCCCceeeeeeceeecCCCcccccCccccCCcccccccCcccccccCCcee-ecceEEE
Q 017387 147 RIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFV 206 (372)
Q Consensus 147 ~v~~~~~i~CPyHGw~Fd~dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e-~~G~I~V 206 (372)
... ++.|+||||||+||.+|+|+..|.. ..|++|++++ ++|.|+|
T Consensus 83 ~~~-~~~i~CP~Hg~~fd~~G~~~~~P~~--------------~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 83 AGD-FGGYYCPCHGSHYDASGRIRKGPAP--------------LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp CTT-TEEEEETTTTEEEETTCCEEESSCC--------------SCCCCCCEEESSSSEEEE
T ss_pred cCC-CCEEEcCCCCCEEcCCCCEeeCCCC--------------CCCCceeEEEEeCCEEEE
Confidence 875 5789999999999999999987742 2488999999 8999987
No 27
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.84 E-value=6.3e-22 Score=170.73 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=87.8
Q ss_pred cccceeeee-eccCCCCCCcchh-hcccceEEEEeCCCCce--EEcccCCCccccCCCCCccCCCCceeeeeeceeecCC
Q 017387 91 RDHWYPVSL-VEDLDPNLPTAFQ-LLGRDLVLWFDNNSNKW--VAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC 166 (372)
Q Consensus 91 ~~~W~~V~~-~~eL~~g~~~~~~-~~g~~lvl~R~~~~G~v--~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw~Fd~d 166 (372)
...|+.++. .+||++|..+.+. +.|++++++|+ .+|++ +|++|+|||||++|+.|.. ++.|+||||||+||.+
T Consensus 19 ~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~-~~G~i~~~A~~n~CpH~g~~L~~g~~--~~~i~CP~Hg~~Fd~t 95 (139)
T 1rfs_A 19 LGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVE-SDKTLATFGINAVCTHLGCVVPFNAA--ENKFICPCHGSQYNNQ 95 (139)
T ss_dssp TSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBC-TTSSBCSEEEECBCTTTCCBCCEETT--TTEEECTTTCCEEETT
T ss_pred CCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEe-CCCcEEEEEEeCcCCCCCCCCccCCC--CCEEEcCCCCCEECCC
Confidence 457888888 8999986665554 67888888888 79999 9999999999999998873 5799999999999999
Q ss_pred CcccccCccccCCcccccccCcccccccCCceeecceEEEecC
Q 017387 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPD 209 (372)
Q Consensus 167 G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~~ 209 (372)
|+|+..|.. ..|++|+|++++|.|||.+-
T Consensus 96 G~~~~~P~~--------------~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 96 GRVVRGPAP--------------LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp CCEEESSCC--------------SCCCEEEEEEETTEEEEEEC
T ss_pred CCCccCCCC--------------CCCCEEEEEEECCEEEEEeC
Confidence 999988742 35899999999999999874
No 28
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.82 E-value=4.6e-21 Score=164.05 Aligned_cols=98 Identities=21% Similarity=0.189 Sum_probs=85.7
Q ss_pred cceeeeeeccCCCCCCcchhhc--ccceEEEEeCC---------CCceEEcccCCCccccCCCCCccCCCCceeeeeece
Q 017387 93 HWYPVSLVEDLDPNLPTAFQLL--GRDLVLWFDNN---------SNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGW 161 (372)
Q Consensus 93 ~W~~V~~~~eL~~g~~~~~~~~--g~~lvl~R~~~---------~G~v~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw 161 (372)
-|+.||.++||++|+++.+++. |++++|+|. . +|+++|+.|+|||+|++|+.+ . .++.|+||||||
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~-~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~-~~~~i~CP~Hg~ 83 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKL-GAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-S-SSKTFSCPCHFT 83 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEEC-SSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-T-TTTEEECTTTCC
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEc-cccccccccCCCEEEEEeCcCCCCCCCCCcc-c-CCCEEECCCCCC
Confidence 5899999999999999998885 899999997 5 899999999999999999974 3 357999999999
Q ss_pred eecC--CCcccccCccccCCcccccccCcccccccCCceee--cceEEEe
Q 017387 162 SFDG--CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVS--QGLLFVW 207 (372)
Q Consensus 162 ~Fd~--dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~--~G~I~V~ 207 (372)
+||. +|+|+..|.. ..|++|+++++ +|.|||.
T Consensus 84 ~Fd~~~~G~~~~gP~~--------------~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 84 EFDAEKAGQMICGEAT--------------ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EEEGGGTTEEEESSCS--------------SCCCEEEEEEETTTTEEEEE
T ss_pred EECCCCCCCEEcCCCC--------------CCCCEEEEEEECCCCEEEEE
Confidence 9999 8999987742 24889999998 6789984
No 29
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.68 E-value=2.8e-21 Score=165.33 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=81.9
Q ss_pred ccceee-eeeccCCCCCCcchh-hcccceEEEEeCCCCc--eEEcccCCCccccCCCCCccCCCCceeeeeeceeecCCC
Q 017387 92 DHWYPV-SLVEDLDPNLPTAFQ-LLGRDLVLWFDNNSNK--WVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCG 167 (372)
Q Consensus 92 ~~W~~V-~~~~eL~~g~~~~~~-~~g~~lvl~R~~~~G~--v~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw~Fd~dG 167 (372)
..++.+ ...+++++|+...++ +.|.+++++|. .+|+ ++|+.|+|||||++|+.|. . ++.|+||||||+||.+|
T Consensus 14 g~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv~~-~~G~~~v~A~~n~CpH~g~~L~~g~-~-~~~i~CP~Hg~~Fd~tG 90 (133)
T 3azc_A 14 GNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVT-EDHQIANYGLNAVCTHLGCVVPWNV-S-ENKFICPCHGSQYDSTG 90 (133)
Confidence 345544 445677777777665 44555555555 5888 9999999999999999987 3 57999999999999999
Q ss_pred cccccCccccCCcccccccCcccccccCCcee-ecceEEEecCCc
Q 017387 168 SCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFVWPDEY 211 (372)
Q Consensus 168 ~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e-~~G~I~V~~~~~ 211 (372)
+|+..|.. .+|++|+|++ ++|.|||.++.+
T Consensus 91 ~~~~~P~~--------------~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 91 KVVRGPAP--------------LSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 99988742 3589999999 999999998653
No 30
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.78 E-value=7.9e-20 Score=163.28 Aligned_cols=99 Identities=22% Similarity=0.234 Sum_probs=84.5
Q ss_pred cceeeeeeccCCCCCCcchhhcc--cceEEEEeC--------CCCceEEcccCCCccccCCCCCccCCCCceeeeeecee
Q 017387 93 HWYPVSLVEDLDPNLPTAFQLLG--RDLVLWFDN--------NSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWS 162 (372)
Q Consensus 93 ~W~~V~~~~eL~~g~~~~~~~~g--~~lvl~R~~--------~~G~v~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw~ 162 (372)
-+..||.++||++|+++.+++.| ++++|+|.. .+|+++|++|+|||||++|+.| . +++.|+||||||+
T Consensus 50 p~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~-~~~~i~CP~Hg~~ 127 (175)
T 4aay_B 50 PANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-A-DNKTFNCPGHFSV 127 (175)
T ss_dssp CCEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-T-TTTEEECTTTCCE
T ss_pred CcceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-C-CCCEEEcCCCCCE
Confidence 34579999999999999999975 579999951 2899999999999999999998 4 3679999999999
Q ss_pred ecCC--CcccccCccccCCcccccccCcccccccCCcee-ecceEEEe
Q 017387 163 FDGC--GSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFVW 207 (372)
Q Consensus 163 Fd~d--G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e-~~G~I~V~ 207 (372)
||.+ |+|+..|.. ..|++|++++ .+|.||+-
T Consensus 128 Fd~~~tG~~~~gPa~--------------~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 128 FDPEKGGQQVWGQAT--------------QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp EEGGGTTEEEECSCS--------------SCCCBEEEEECTTSEEEEE
T ss_pred ECCCCCceEecCCCC--------------CCcCEEEEEEEcCCEEEEE
Confidence 9996 999988752 2488999999 58889864
No 31
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.72 E-value=4.2e-18 Score=154.68 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=83.5
Q ss_pred eeeeccCCCCCCcchhhcccceEEEEeCC--------------------------CCceEEcccCCCccccCCCCCccCC
Q 017387 97 VSLVEDLDPNLPTAFQLLGRDLVLWFDNN--------------------------SNKWVAFDDKCPHRLAPLSEGRIDE 150 (372)
Q Consensus 97 V~~~~eL~~g~~~~~~~~g~~lvl~R~~~--------------------------~G~v~A~~n~CpHRga~Ls~G~v~~ 150 (372)
.+.+++|++|+.+.+++.|++|+|+|. . +|+++|+.|+|||+|++|+.|..+
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~-t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~- 152 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHR-TKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGD- 152 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEEC-CHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCST-
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEEC-CHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCC-
Confidence 478999999999999999999999985 2 799999999999999999998764
Q ss_pred CCceeeeeeceeecCCCcccccCccccCCcccccccCcccccccCCcee-ecceEEE
Q 017387 151 NGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFV 206 (372)
Q Consensus 151 ~~~i~CPyHGw~Fd~dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e-~~G~I~V 206 (372)
.+.|.||||||+||.+|+++..|.. ..|..|++++ .+|.|+|
T Consensus 153 ~~~~~CP~HGs~FD~~G~v~~gPa~--------------~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 153 FGGYYCPCHGSHYDASGRIRKGPAP--------------LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp TSSEEETTTTEEECTTCCEEESSCC--------------SCCCCCCEEEETTTEEEE
T ss_pred CCEEEeCCCCCEECCCCCCccCCCC--------------CCCcceeEEEEECCEEEE
Confidence 5789999999999999999987742 2488999998 7899987
No 32
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.72 E-value=6.4e-18 Score=152.29 Aligned_cols=97 Identities=14% Similarity=0.187 Sum_probs=82.6
Q ss_pred ccceeeeeeccCCCCCCcchhhcccceEEEEeCC--------------------------CCceEEcccCCCccccC-CC
Q 017387 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNN--------------------------SNKWVAFDDKCPHRLAP-LS 144 (372)
Q Consensus 92 ~~W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~~~--------------------------~G~v~A~~n~CpHRga~-Ls 144 (372)
..|+.| .+++|++|+.+.+++.|++|+|+|. . +|+++|+.|+|+|+|+. +.
T Consensus 61 ~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~-~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~ 138 (185)
T 3cx5_E 61 MAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHR-TPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIG 138 (185)
T ss_dssp CCCEEE-EGGGCCTTCEEEEEETTEEEEEEEC-CHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEE
T ss_pred cCcEEE-EHHHCCCCCeEEEEECCeEEEEEEC-CHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceecc
Confidence 479999 6999999999999999999999996 3 58999999999999995 54
Q ss_pred CCccCCCCceeeeeeceeecCCCcccccCccccCCcccccccCcccccccCCceeecceEEE
Q 017387 145 EGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFV 206 (372)
Q Consensus 145 ~G~v~~~~~i~CPyHGw~Fd~dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V 206 (372)
.+ . +.+.|.||||||+||.+|+|+..|.. ..|..+++++.+|.|||
T Consensus 139 ~~-~-~~~~~~CPcHGs~FD~~G~v~~gPa~--------------~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 139 EA-G-DFGGWFCPCHGSHYDISGRIRKGPAP--------------LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp EE-T-TTTEEEETTTTEEECTTCCEEESSCC--------------SCCCCCCEEEETTEEEE
T ss_pred CC-C-CCCEEEcCCCCCEECCCCCEecCCCC--------------CCcceEEEEEECCEEEE
Confidence 43 2 35789999999999999999988742 24777888888999987
No 33
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.71 E-value=5.3e-18 Score=153.05 Aligned_cols=98 Identities=16% Similarity=0.280 Sum_probs=81.7
Q ss_pred ceeeeeeccCCCCCCcchhhcccceEEEEe------------------C---------------------CCCceEEccc
Q 017387 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFD------------------N---------------------NSNKWVAFDD 134 (372)
Q Consensus 94 W~~V~~~~eL~~g~~~~~~~~g~~lvl~R~------------------~---------------------~~G~v~A~~n 134 (372)
|+.| ..++|++|+.+.+++.|++|+|+|. + .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 5554 7899999999999999999999992 0 2799999999
Q ss_pred CCCccccCCCCCccCCCCceeeeeeceeecCCCcccccCccccCCcccccccCcccccccCCceee-cceEEE
Q 017387 135 KCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVS-QGLLFV 206 (372)
Q Consensus 135 ~CpHRga~Ls~G~v~~~~~i~CPyHGw~Fd~dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~-~G~I~V 206 (372)
+|||+|++|+.|..+..+.|.||||||+||.+|+|+..|.. ..|..|++++. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~--------------~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP--------------ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC--------------SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC--------------CCCceEEEEEEeCCEEEE
Confidence 99999999998422223789999999999999999987742 24889999986 688887
No 34
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.71 E-value=2.1e-18 Score=154.60 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=80.5
Q ss_pred eccCCCCCCcchh-hcccceEEEEeCCCCce--EEcccCCCccccCCCCCccCCCCceeeeeeceeecCCCcccccCccc
Q 017387 100 VEDLDPNLPTAFQ-LLGRDLVLWFDNNSNKW--VAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAA 176 (372)
Q Consensus 100 ~~eL~~g~~~~~~-~~g~~lvl~R~~~~G~v--~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw~Fd~dG~c~~iP~~~ 176 (372)
.++|++|+...+. +.|++++++|+ .+|++ +|+.|+|||+|++|+.+.. ++.|.||||||+||.+|+|+..|..
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~-~~g~~~~~a~~~~CtH~G~~l~~~~~--~~~~~CP~Hgs~Fd~~G~~~~gPa~- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVE-SKEAIRDYGINAVCTHLGCVVPWNAA--ENKFKCPCHGSQYDETGRVIRGPAP- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBC-TTCCBCSCCCBCBCTTTSCBCCBCSS--SSSEECTTTCCEECSSSCCCSSSCC-
T ss_pred ccccCCCceEEEeccCCCeEEEEEE-CCCcEEEEEEeCccCCCCCCCcccCC--CCEEECCCCCCEECCCCcEecCCCC-
Confidence 5678888887776 78999999998 79997 9999999999999998873 5789999999999999999987742
Q ss_pred cCCcccccccCcccccccCCceeecceEEEec
Q 017387 177 SEGPEARAIQSPRACATRFPTMVSQGLLFVWP 208 (372)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~pv~e~~G~I~V~~ 208 (372)
..|..|++++++|.|||.+
T Consensus 146 -------------~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 146 -------------LSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp -------------SCCBCCCCCCSSSSCCCCC
T ss_pred -------------CCCCeEEEEEECCEEEEEe
Confidence 2589999999999999976
No 35
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.71 E-value=6.4e-18 Score=145.92 Aligned_cols=93 Identities=16% Similarity=0.280 Sum_probs=74.5
Q ss_pred eeccCCCCCCcchhhcccceEEEEe---------------------------------------CCCCceEEcccCCCcc
Q 017387 99 LVEDLDPNLPTAFQLLGRDLVLWFD---------------------------------------NNSNKWVAFDDKCPHR 139 (372)
Q Consensus 99 ~~~eL~~g~~~~~~~~g~~lvl~R~---------------------------------------~~~G~v~A~~n~CpHR 139 (372)
.+++|++|+.++++..|++|+|.|. ..+|+++|+.|+|||+
T Consensus 7 d~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H~ 86 (141)
T 2nwf_A 7 DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHL 86 (141)
T ss_dssp ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTTT
T ss_pred ecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCCC
Confidence 4566666777777777777777663 0278999999999999
Q ss_pred ccCCCC-CccCCCCceeeeeeceeecCCCcccccCccccCCcccccccCcccccccCCcee-ecceEEE
Q 017387 140 LAPLSE-GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFV 206 (372)
Q Consensus 140 ga~Ls~-G~v~~~~~i~CPyHGw~Fd~dG~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e-~~G~I~V 206 (372)
|++|+. +... ++.|.||||||+||.+|+|+..|.. ..|..|++++ .+|.|+|
T Consensus 87 G~~l~~~~~~~-~~~~~CP~Hgs~Fd~~G~~~~gPa~--------------~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 87 GCVPIGGVSGD-FGGWFCPCHGSHWDSAGRIRKGPAP--------------ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp CCCCEEEEETT-TTEEEETTTTEEECTTSCEEESSCC--------------SCCCBCSEEESSSSEEEE
T ss_pred CeEccccCccC-CCEEEcCCCCCEECCCCCCccCCCC--------------CCCCceeEEEEECCEEEE
Confidence 999998 5543 5789999999999999999987742 2488999998 7899987
No 36
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.70 E-value=9.8e-18 Score=148.41 Aligned_cols=70 Identities=23% Similarity=0.307 Sum_probs=60.8
Q ss_pred CceEEcccCCCccccCCCCCccCCCCceeeeeeceeecCC-Cc-ccccCccccCCcccccccCcccccccCCceeecceE
Q 017387 127 NKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC-GS-CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLL 204 (372)
Q Consensus 127 G~v~A~~n~CpHRga~Ls~G~v~~~~~i~CPyHGw~Fd~d-G~-c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~I 204 (372)
+.++|+.|+|||||++|+.|..+ ++.|+||||||+||++ |. |+..|.. ..|..|++++++|.|
T Consensus 78 ~gv~A~~~~CpH~G~~L~~g~~~-~~~i~CP~Hgs~Fd~~tG~~~~~gPa~--------------~~L~~~~v~v~~g~V 142 (165)
T 1nyk_A 78 EGVVAYSAVCTHLGCIVSQWVAD-EEAALCPCHGGVYDLRHGAQVIAGPPP--------------RPVPQLPVRVEDGVL 142 (165)
T ss_dssp TTEEEEECBCTTTCCBCCEEEGG-GTEEECTTTCCEEEGGGTTEEEESSCS--------------SCCCEECEEEETTEE
T ss_pred CCEEEEEeecCCCCeEcccccCC-CCEEECCCCCCEEcCCCCCeeecCCCC--------------CCCcEEEEEEECCEE
Confidence 34999999999999999988875 6799999999999995 86 9887742 358999999999999
Q ss_pred EEecCCc
Q 017387 205 FVWPDEY 211 (372)
Q Consensus 205 ~V~~~~~ 211 (372)
||+++..
T Consensus 143 ~v~~~~~ 149 (165)
T 1nyk_A 143 VAAGEFL 149 (165)
T ss_dssp EECSSCS
T ss_pred EEEecCc
Confidence 9999764
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.61 E-value=3.5e-17 Score=149.49 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=71.5
Q ss_pred CcchhhcccceEEEEeCC------------CCceEEcccCCCccccCCCCCcc----------CCCCceeeeeeceeecC
Q 017387 108 PTAFQLLGRDLVLWFDNN------------SNKWVAFDDKCPHRLAPLSEGRI----------DENGHLQCSYHGWSFDG 165 (372)
Q Consensus 108 ~~~~~~~g~~lvl~R~~~------------~G~v~A~~n~CpHRga~Ls~G~v----------~~~~~i~CPyHGw~Fd~ 165 (372)
.+.+++.+.+++++|+ . +|+++|+.|+|||+|++|+.|.+ ..++.|+||||||+||+
T Consensus 55 ~~~v~v~~~~i~v~r~-~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl 133 (204)
T 1jm1_A 55 QQITEIPNPYYGKYAG-PLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYAL 133 (204)
T ss_dssp SCCCEEECTTTTSSCT-TGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEG
T ss_pred cceEeeCCceEEEEec-CccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeC
Confidence 4567889999999987 5 69999999999999999999853 23578999999999999
Q ss_pred C--CcccccCccccCCcccccccCcccccccCCceee--cceEEEec
Q 017387 166 C--GSCTRIPQAASEGPEARAIQSPRACATRFPTMVS--QGLLFVWP 208 (372)
Q Consensus 166 d--G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~--~G~I~V~~ 208 (372)
+ |+|+..|.. ..|+.|+++++ +|.|||..
T Consensus 134 ~tGG~v~~gPa~--------------~~L~~~~v~v~~~~g~v~v~g 166 (204)
T 1jm1_A 134 KDGGVVVSGPAP--------------RPLPIVILDYDSSTGDIYAVG 166 (204)
T ss_dssp GGTSEEEESSCC--------------SCCCBEEEEECTTTCEEEEEE
T ss_pred CCCCeEecCCCC--------------CCCCeEeeEEEecCCEEEEEe
Confidence 6 799987742 24777887766 89999875
Done!