Query 017388
Match_columns 372
No_of_seqs 227 out of 823
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4563 Cell cycle-regulated h 99.9 1.2E-24 2.6E-29 211.5 14.1 271 62-371 37-325 (400)
2 KOG1840 Kinesin light chain [C 99.7 9.9E-17 2.1E-21 165.7 20.0 165 62-310 237-402 (508)
3 KOG1840 Kinesin light chain [C 99.6 4.8E-14 1E-18 145.9 20.5 159 66-308 199-358 (508)
4 PF13424 TPR_12: Tetratricopep 99.5 6E-14 1.3E-18 108.9 8.8 78 229-307 1-78 (78)
5 KOG4626 O-linked N-acetylgluco 99.4 2E-12 4.3E-17 133.5 9.8 91 213-311 368-458 (966)
6 KOG4626 O-linked N-acetylgluco 99.3 5.1E-11 1.1E-15 123.2 14.1 166 66-305 320-486 (966)
7 TIGR02521 type_IV_pilW type IV 99.1 3.9E-09 8.5E-14 94.2 17.6 169 64-305 29-199 (234)
8 KOG4563 Cell cycle-regulated h 99.1 1.2E-11 2.6E-16 121.2 0.8 308 1-322 1-343 (400)
9 TIGR00990 3a0801s09 mitochondr 99.1 1.8E-09 4E-14 114.6 17.3 167 65-306 330-498 (615)
10 PRK11189 lipoprotein NlpI; Pro 99.1 3.6E-09 7.8E-14 102.9 16.9 173 65-305 63-266 (296)
11 PF14938 SNAP: Soluble NSF att 99.1 6.3E-09 1.4E-13 100.5 17.9 149 66-304 35-184 (282)
12 TIGR00990 3a0801s09 mitochondr 99.1 6.7E-09 1.5E-13 110.4 19.6 175 66-308 399-575 (615)
13 KOG1130 Predicted G-alpha GTPa 99.0 1.4E-09 2.9E-14 108.6 11.5 99 206-307 209-307 (639)
14 TIGR02521 type_IV_pilW type IV 99.0 2.1E-08 4.5E-13 89.5 16.5 166 66-304 65-232 (234)
15 KOG1130 Predicted G-alpha GTPa 99.0 9.2E-10 2E-14 109.8 7.6 172 65-306 94-266 (639)
16 PF13424 TPR_12: Tetratricopep 98.9 5.2E-09 1.1E-13 81.0 9.1 60 206-265 19-78 (78)
17 PRK15359 type III secretion sy 98.9 1.9E-08 4.1E-13 87.9 12.0 85 207-306 39-123 (144)
18 PF10516 SHNi-TPR: SHNi-TPR; 98.9 3E-09 6.5E-14 72.6 4.5 38 233-270 1-38 (38)
19 PF13414 TPR_11: TPR repeat; P 98.9 1.2E-08 2.5E-13 77.0 8.3 65 232-304 2-67 (69)
20 CHL00033 ycf3 photosystem I as 98.9 6.1E-08 1.3E-12 86.0 13.7 126 64-278 33-158 (168)
21 COG3063 PilF Tfp pilus assembl 98.8 1.2E-07 2.6E-12 88.7 15.6 142 63-309 32-173 (250)
22 PRK09782 bacteriophage N4 rece 98.8 6.1E-08 1.3E-12 108.3 15.8 162 68-305 544-707 (987)
23 TIGR03302 OM_YfiO outer membra 98.8 1.8E-07 3.8E-12 86.8 16.2 186 65-302 32-230 (235)
24 PRK15174 Vi polysaccharide exp 98.8 1.3E-07 2.7E-12 101.8 17.2 161 70-305 216-382 (656)
25 PRK15174 Vi polysaccharide exp 98.8 1.1E-07 2.4E-12 102.3 16.1 81 217-305 268-348 (656)
26 KOG1126 DNA-binding cell divis 98.8 6.4E-09 1.4E-13 108.5 5.8 189 60-304 313-518 (638)
27 PRK12370 invasion protein regu 98.8 1.8E-07 4E-12 98.6 16.7 83 207-303 387-469 (553)
28 PRK11788 tetratricopeptide rep 98.8 5E-07 1.1E-11 89.4 18.7 68 230-304 211-278 (389)
29 PRK15359 type III secretion sy 98.8 1.4E-07 3E-12 82.4 12.5 113 68-287 26-138 (144)
30 PRK11788 tetratricopeptide rep 98.7 5.1E-07 1.1E-11 89.4 17.8 60 59-126 28-87 (389)
31 PRK12370 invasion protein regu 98.7 2E-07 4.3E-12 98.3 15.7 82 215-304 354-435 (553)
32 KOG1126 DNA-binding cell divis 98.7 3.8E-08 8.2E-13 102.9 9.8 133 66-305 421-553 (638)
33 TIGR02917 PEP_TPR_lipo putativ 98.7 2.3E-07 4.9E-12 98.9 15.8 191 66-307 22-225 (899)
34 PRK15179 Vi polysaccharide bio 98.7 3.3E-07 7.2E-12 99.0 17.0 83 216-306 137-219 (694)
35 PLN03088 SGT1, suppressor of 98.7 1.6E-07 3.4E-12 94.0 13.4 116 66-288 2-117 (356)
36 KOG0553 TPR repeat-containing 98.7 1.7E-07 3.8E-12 90.5 13.0 105 61-264 76-180 (304)
37 PRK10370 formate-dependent nit 98.7 2.5E-07 5.4E-12 85.2 12.9 85 207-306 88-175 (198)
38 PRK11447 cellulose synthase su 98.7 2.7E-07 6E-12 105.0 15.2 167 71-304 274-447 (1157)
39 CHL00033 ycf3 photosystem I as 98.7 2.2E-07 4.8E-12 82.5 11.4 101 207-312 50-150 (168)
40 PF14938 SNAP: Soluble NSF att 98.7 5E-07 1.1E-11 87.3 14.6 97 207-307 50-147 (282)
41 TIGR02552 LcrH_SycD type III s 98.6 3.1E-07 6.6E-12 77.6 11.0 85 207-306 32-116 (135)
42 KOG1173 Anaphase-promoting com 98.6 2.7E-07 5.9E-12 95.2 11.6 173 66-306 346-520 (611)
43 PRK11189 lipoprotein NlpI; Pro 98.6 5.2E-07 1.1E-11 87.8 12.8 84 207-305 79-162 (296)
44 KOG1125 TPR repeat-containing 98.6 1.1E-06 2.3E-11 91.1 14.1 215 70-320 289-556 (579)
45 PRK11447 cellulose synthase su 98.6 9.3E-07 2E-11 100.8 15.0 169 68-305 353-525 (1157)
46 PRK02603 photosystem I assembl 98.5 1.5E-06 3.3E-11 77.6 13.1 54 63-121 32-85 (172)
47 PRK09782 bacteriophage N4 rece 98.5 7.2E-07 1.6E-11 99.8 13.3 165 69-309 579-745 (987)
48 PRK10370 formate-dependent nit 98.5 2.4E-06 5.2E-11 78.7 13.6 103 66-264 73-175 (198)
49 TIGR02917 PEP_TPR_lipo putativ 98.5 3.7E-06 7.9E-11 89.7 16.9 168 65-307 124-293 (899)
50 PRK15363 pathogenicity island 98.5 8.9E-07 1.9E-11 78.8 9.7 81 217-305 53-133 (157)
51 COG3063 PilF Tfp pilus assembl 98.5 2.9E-06 6.3E-11 79.6 12.8 131 67-302 70-200 (250)
52 PF13429 TPR_15: Tetratricopep 98.5 1.2E-06 2.5E-11 83.8 10.6 65 234-306 215-279 (280)
53 KOG0547 Translocase of outer m 98.4 3.4E-06 7.4E-11 86.1 12.8 182 66-313 394-575 (606)
54 TIGR02795 tol_pal_ybgF tol-pal 98.4 1E-05 2.2E-10 65.8 13.1 105 66-263 2-106 (119)
55 PRK02603 photosystem I assembl 98.4 1.4E-05 3.1E-10 71.2 14.9 95 206-312 49-143 (172)
56 PF09976 TPR_21: Tetratricopep 98.4 4.1E-05 8.9E-10 66.5 17.3 139 62-302 7-145 (145)
57 PRK04841 transcriptional regul 98.4 2.4E-05 5.2E-10 86.3 19.6 100 206-306 505-604 (903)
58 KOG1125 TPR repeat-containing 98.4 1.8E-06 4E-11 89.3 9.8 134 66-298 430-565 (579)
59 KOG0553 TPR repeat-containing 98.4 1.4E-06 3E-11 84.3 8.4 98 215-320 97-200 (304)
60 PF13374 TPR_10: Tetratricopep 98.3 8.4E-07 1.8E-11 59.9 4.9 42 232-273 1-42 (42)
61 PLN03088 SGT1, suppressor of 98.3 1.7E-06 3.7E-11 86.6 9.0 85 206-305 16-100 (356)
62 TIGR02795 tol_pal_ybgF tol-pal 98.3 4.6E-06 9.9E-11 68.0 9.6 92 206-306 16-107 (119)
63 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 2.4E-06 5.2E-11 87.2 9.5 72 229-305 71-142 (453)
64 KOG1173 Anaphase-promoting com 98.3 5.7E-06 1.2E-10 85.7 12.2 172 66-305 312-485 (611)
65 KOG0547 Translocase of outer m 98.3 3.3E-06 7.1E-11 86.3 10.2 186 48-304 340-532 (606)
66 PRK04841 transcriptional regul 98.3 4.7E-05 1E-09 84.0 20.1 99 205-306 544-643 (903)
67 PRK10153 DNA-binding transcrip 98.3 2E-05 4.4E-10 82.7 16.3 142 65-304 338-482 (517)
68 PF13432 TPR_16: Tetratricopep 98.3 2E-06 4.3E-11 64.1 6.0 60 237-304 1-60 (65)
69 TIGR02552 LcrH_SycD type III s 98.3 4.9E-05 1.1E-09 64.1 15.2 100 66-264 17-116 (135)
70 PF12895 Apc3: Anaphase-promot 98.3 4.9E-06 1.1E-10 65.4 8.2 82 206-301 3-84 (84)
71 KOG0550 Molecular chaperone (D 98.2 1.3E-05 2.9E-10 80.5 11.8 102 206-318 263-369 (486)
72 KOG1839 Uncharacterized protei 98.2 8.3E-06 1.8E-10 91.1 10.5 163 63-310 929-1092(1236)
73 PRK10049 pgaA outer membrane p 98.2 2.9E-05 6.3E-10 85.1 14.6 80 207-302 98-177 (765)
74 cd00189 TPR Tetratricopeptide 98.2 2.2E-05 4.7E-10 58.5 9.5 97 68-263 2-98 (100)
75 PRK15363 pathogenicity island 98.1 6E-05 1.3E-09 67.2 13.6 103 63-264 32-134 (157)
76 cd05804 StaR_like StaR_like; a 98.1 5.2E-05 1.1E-09 74.2 14.3 88 215-306 130-217 (355)
77 KOG2002 TPR-containing nuclear 98.1 3.7E-05 8E-10 83.8 13.9 74 230-310 304-377 (1018)
78 PF13374 TPR_10: Tetratricopep 98.1 6.3E-06 1.4E-10 55.5 5.0 41 66-106 2-42 (42)
79 KOG1155 Anaphase-promoting com 98.1 4.3E-05 9.4E-10 77.8 12.9 81 217-305 416-496 (559)
80 cd05804 StaR_like StaR_like; a 98.1 4.8E-05 1E-09 74.4 12.4 46 68-122 45-90 (355)
81 KOG0548 Molecular co-chaperone 98.0 8.5E-05 1.8E-09 76.7 13.5 160 65-305 297-456 (539)
82 cd00189 TPR Tetratricopeptide 98.0 1.9E-05 4.1E-10 58.8 6.6 85 206-305 14-98 (100)
83 PRK10803 tol-pal system protei 98.0 3.7E-05 8E-10 74.1 9.9 86 215-305 159-247 (263)
84 KOG2002 TPR-containing nuclear 98.0 0.00011 2.4E-09 80.1 14.4 90 213-306 394-483 (1018)
85 KOG0543 FKBP-type peptidyl-pro 98.0 0.00037 8.1E-09 70.1 17.1 68 19-96 171-238 (397)
86 KOG4234 TPR repeat-containing 97.9 0.00027 5.9E-09 65.5 13.6 65 54-121 83-147 (271)
87 TIGR03302 OM_YfiO outer membra 97.9 9.9E-05 2.1E-09 68.3 11.0 92 206-306 47-146 (235)
88 PRK15179 Vi polysaccharide bio 97.9 0.00019 4.1E-09 77.9 14.5 133 67-303 49-182 (694)
89 PRK10049 pgaA outer membrane p 97.9 0.0002 4.2E-09 78.6 14.4 128 72-307 21-148 (765)
90 PF12895 Apc3: Anaphase-promot 97.9 0.0001 2.2E-09 57.9 8.9 83 79-259 2-84 (84)
91 PF09976 TPR_21: Tetratricopep 97.8 0.00039 8.4E-09 60.3 12.8 98 66-260 48-145 (145)
92 PF13414 TPR_11: TPR repeat; P 97.8 4.3E-05 9.4E-10 57.3 5.4 52 65-124 2-54 (69)
93 PLN02789 farnesyltranstransfer 97.8 0.00039 8.5E-09 68.9 13.2 84 218-309 127-210 (320)
94 KOG1839 Uncharacterized protei 97.8 0.00025 5.4E-09 79.7 12.8 172 60-315 967-1139(1236)
95 PRK10803 tol-pal system protei 97.7 0.00035 7.5E-09 67.4 12.0 104 68-264 144-248 (263)
96 PF13371 TPR_9: Tetratricopept 97.7 9E-05 1.9E-09 56.1 6.3 60 239-306 1-60 (73)
97 KOG0548 Molecular co-chaperone 97.7 0.0019 4.1E-08 67.0 17.2 53 63-124 221-273 (539)
98 KOG2076 RNA polymerase III tra 97.7 0.0011 2.3E-08 72.2 15.6 135 65-306 138-272 (895)
99 KOG2003 TPR repeat-containing 97.7 0.00019 4.2E-09 73.1 9.4 47 65-119 489-535 (840)
100 COG5010 TadD Flp pilus assembl 97.7 0.00034 7.4E-09 66.7 10.5 123 68-297 102-224 (257)
101 PRK10866 outer membrane biogen 97.7 0.0032 6.9E-08 59.9 17.3 185 65-299 31-236 (243)
102 PF13429 TPR_15: Tetratricopep 97.7 0.0009 1.9E-08 63.9 13.7 92 206-312 160-251 (280)
103 PRK10747 putative protoheme IX 97.7 0.00057 1.2E-08 69.3 12.8 68 229-305 324-391 (398)
104 PF13525 YfiO: Outer membrane 97.7 0.0042 9.2E-08 57.1 17.5 148 65-305 4-171 (203)
105 KOG4340 Uncharacterized conser 97.7 0.00032 7E-09 68.4 10.3 155 67-302 45-205 (459)
106 PF09986 DUF2225: Uncharacteri 97.6 0.00068 1.5E-08 63.5 11.8 100 205-304 90-194 (214)
107 KOG2376 Signal recognition par 97.6 0.0027 5.8E-08 66.7 16.8 73 231-303 173-252 (652)
108 KOG1129 TPR repeat-containing 97.6 0.00024 5.2E-09 70.0 8.4 94 216-314 341-434 (478)
109 PRK14720 transcript cleavage f 97.6 0.0014 3.1E-08 72.6 14.9 150 66-306 31-180 (906)
110 KOG1129 TPR repeat-containing 97.6 0.00044 9.5E-09 68.2 9.7 84 215-306 374-460 (478)
111 COG1729 Uncharacterized protei 97.6 0.001 2.3E-08 63.9 12.1 105 66-263 141-245 (262)
112 KOG1174 Anaphase-promoting com 97.5 0.0024 5.2E-08 64.7 14.8 84 215-307 420-503 (564)
113 PRK14574 hmsH outer membrane p 97.5 0.0012 2.5E-08 73.2 13.9 92 216-318 119-212 (822)
114 PF13525 YfiO: Outer membrane 97.5 0.0076 1.6E-07 55.5 17.3 143 66-294 42-197 (203)
115 KOG4162 Predicted calmodulin-b 97.5 0.0013 2.8E-08 70.7 13.4 130 68-304 652-783 (799)
116 PF13432 TPR_16: Tetratricopep 97.5 0.00011 2.3E-09 54.6 4.0 50 70-127 1-50 (65)
117 PF12688 TPR_5: Tetratrico pep 97.5 0.00048 1E-08 58.8 8.4 66 234-304 2-67 (120)
118 PF14559 TPR_19: Tetratricopep 97.5 0.00011 2.5E-09 54.7 3.9 56 244-307 2-57 (68)
119 PF00515 TPR_1: Tetratricopept 97.5 0.00019 4.1E-09 46.6 4.4 31 275-305 1-31 (34)
120 KOG4648 Uncharacterized conser 97.5 0.00065 1.4E-08 67.4 9.5 53 62-122 93-145 (536)
121 COG5010 TadD Flp pilus assembl 97.5 0.0017 3.7E-08 62.0 12.0 84 215-306 116-199 (257)
122 COG1729 Uncharacterized protei 97.4 0.0011 2.4E-08 63.6 10.8 94 207-305 144-245 (262)
123 TIGR00540 hemY_coli hemY prote 97.4 0.0015 3.3E-08 66.3 12.4 64 233-305 335-400 (409)
124 KOG4555 TPR repeat-containing 97.4 0.0014 3.1E-08 57.0 10.0 90 204-304 55-144 (175)
125 PRK11906 transcriptional regul 97.4 0.0029 6.2E-08 65.1 13.7 148 68-310 257-407 (458)
126 KOG4642 Chaperone-dependent E3 97.4 0.00084 1.8E-08 63.6 9.0 107 64-269 8-114 (284)
127 KOG1155 Anaphase-promoting com 97.4 0.00066 1.4E-08 69.4 8.7 104 214-320 345-483 (559)
128 PF00515 TPR_1: Tetratricopept 97.4 0.00025 5.4E-09 46.0 3.8 32 233-264 1-32 (34)
129 PF13176 TPR_7: Tetratricopept 97.4 0.00042 9E-09 46.2 4.8 32 235-266 1-32 (36)
130 PF06552 TOM20_plant: Plant sp 97.3 0.0024 5.1E-08 58.2 11.1 35 89-124 7-41 (186)
131 KOG2003 TPR repeat-containing 97.3 0.0014 3.1E-08 67.0 10.6 88 206-308 504-591 (840)
132 COG4235 Cytochrome c biogenesi 97.3 0.0057 1.2E-07 59.6 14.1 111 66-276 156-266 (287)
133 PF07719 TPR_2: Tetratricopept 97.3 0.00051 1.1E-08 44.2 4.4 31 275-305 1-31 (34)
134 PLN02789 farnesyltranstransfer 97.3 0.012 2.6E-07 58.4 16.0 39 75-121 46-84 (320)
135 TIGR00540 hemY_coli hemY prote 97.2 0.0081 1.8E-07 61.0 14.6 51 63-121 81-131 (409)
136 PRK10866 outer membrane biogen 97.2 0.031 6.8E-07 53.2 17.7 95 206-304 83-204 (243)
137 KOG0550 Molecular chaperone (D 97.2 0.0016 3.6E-08 65.8 9.2 81 230-314 246-326 (486)
138 PRK10747 putative protoheme IX 97.2 0.0088 1.9E-07 60.6 14.7 77 230-306 260-359 (398)
139 KOG1586 Protein required for f 97.2 0.02 4.4E-07 54.4 15.8 91 207-301 88-180 (288)
140 COG2956 Predicted N-acetylgluc 97.2 0.0082 1.8E-07 59.3 13.4 83 217-306 198-280 (389)
141 KOG0545 Aryl-hydrocarbon recep 97.2 0.005 1.1E-07 58.8 11.5 114 62-266 174-297 (329)
142 PF06552 TOM20_plant: Plant sp 97.1 0.0013 2.7E-08 60.0 6.9 81 214-302 6-107 (186)
143 PF13176 TPR_7: Tetratricopept 97.1 0.00098 2.1E-08 44.4 4.6 30 277-306 1-30 (36)
144 PF07719 TPR_2: Tetratricopept 97.1 0.0012 2.5E-08 42.5 4.7 32 233-264 1-32 (34)
145 PF13181 TPR_8: Tetratricopept 97.1 0.0011 2.5E-08 42.7 4.4 32 233-264 1-32 (34)
146 PF12688 TPR_5: Tetratrico pep 97.0 0.02 4.3E-07 48.9 12.6 83 216-303 18-103 (120)
147 PF13181 TPR_8: Tetratricopept 97.0 0.0014 3.1E-08 42.3 4.3 32 275-306 1-32 (34)
148 PRK15331 chaperone protein Sic 97.0 0.0029 6.2E-08 56.9 7.5 80 216-303 54-133 (165)
149 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0016 3.5E-08 66.8 6.6 55 64-126 73-130 (453)
150 PRK14720 transcript cleavage f 96.9 0.013 2.9E-07 65.2 13.7 47 67-121 117-163 (906)
151 KOG0624 dsRNA-activated protei 96.9 0.019 4.2E-07 57.2 13.1 138 64-305 36-185 (504)
152 PF13428 TPR_14: Tetratricopep 96.9 0.0026 5.6E-08 44.1 5.2 41 68-116 3-43 (44)
153 PF09295 ChAPs: ChAPs (Chs5p-A 96.8 0.018 4E-07 58.7 13.1 62 230-299 231-292 (395)
154 KOG1941 Acetylcholine receptor 96.8 0.012 2.6E-07 58.9 11.3 99 205-304 135-235 (518)
155 KOG1174 Anaphase-promoting com 96.8 0.018 3.9E-07 58.6 12.5 174 65-312 231-405 (564)
156 KOG4234 TPR repeat-containing 96.7 0.017 3.7E-07 53.8 10.9 75 230-307 92-166 (271)
157 KOG2076 RNA polymerase III tra 96.7 0.032 7E-07 61.1 14.5 82 215-303 465-554 (895)
158 PF08631 SPO22: Meiosis protei 96.6 0.069 1.5E-06 51.6 15.0 140 76-303 3-149 (278)
159 KOG1586 Protein required for f 96.6 0.051 1.1E-06 51.7 13.4 91 215-309 77-181 (288)
160 KOG3060 Uncharacterized conser 96.6 0.0051 1.1E-07 58.9 6.8 76 233-313 154-229 (289)
161 PF12862 Apc5: Anaphase-promot 96.6 0.02 4.3E-07 46.3 9.2 68 241-308 6-74 (94)
162 PF03704 BTAD: Bacterial trans 96.6 0.024 5.3E-07 48.7 10.2 97 206-310 20-131 (146)
163 KOG1128 Uncharacterized conser 96.6 0.016 3.5E-07 62.2 10.7 41 77-125 496-536 (777)
164 KOG4555 TPR repeat-containing 96.5 0.084 1.8E-06 46.3 13.1 110 59-263 36-145 (175)
165 PF12968 DUF3856: Domain of Un 96.5 0.023 5E-07 48.7 9.1 80 233-312 55-137 (144)
166 PF13428 TPR_14: Tetratricopep 96.4 0.0051 1.1E-07 42.6 4.2 42 234-283 2-43 (44)
167 KOG2376 Signal recognition par 96.4 0.17 3.6E-06 53.6 17.0 83 205-291 188-278 (652)
168 KOG1128 Uncharacterized conser 96.4 0.02 4.4E-07 61.5 10.5 82 207-303 500-581 (777)
169 PF13512 TPR_18: Tetratricopep 96.4 0.02 4.4E-07 50.3 8.6 56 230-290 44-99 (142)
170 PF14559 TPR_19: Tetratricopep 96.3 0.007 1.5E-07 44.9 4.7 43 76-126 1-43 (68)
171 PRK14574 hmsH outer membrane p 96.2 0.098 2.1E-06 58.2 14.8 59 235-301 171-229 (822)
172 PF12569 NARP1: NMDA receptor- 96.2 0.28 6E-06 51.9 17.4 65 232-304 193-257 (517)
173 KOG4642 Chaperone-dependent E3 96.1 0.02 4.4E-07 54.5 7.6 84 215-306 26-109 (284)
174 KOG1941 Acetylcholine receptor 96.1 0.28 6.1E-06 49.5 15.9 98 207-307 221-323 (518)
175 COG0457 NrfG FOG: TPR repeat [ 96.1 0.24 5.2E-06 41.4 13.7 172 66-307 59-234 (291)
176 COG2956 Predicted N-acetylgluc 96.1 0.18 4E-06 50.0 14.3 74 229-310 176-249 (389)
177 PF12862 Apc5: Anaphase-promot 96.1 0.074 1.6E-06 42.9 10.0 77 206-284 12-90 (94)
178 KOG0543 FKBP-type peptidyl-pro 96.1 0.019 4E-07 58.1 7.6 75 231-305 206-287 (397)
179 PF12569 NARP1: NMDA receptor- 96.0 0.15 3.3E-06 53.8 14.6 138 65-307 193-337 (517)
180 KOG1127 TPR repeat-containing 96.0 0.067 1.4E-06 59.5 12.1 61 236-304 565-625 (1238)
181 COG0457 NrfG FOG: TPR repeat [ 95.9 0.38 8.1E-06 40.2 14.1 96 208-308 104-200 (291)
182 PRK15331 chaperone protein Sic 95.8 0.17 3.7E-06 45.6 11.8 100 63-261 34-133 (165)
183 COG4105 ComL DNA uptake lipopr 95.8 0.57 1.2E-05 45.0 15.9 171 65-295 33-224 (254)
184 PF13431 TPR_17: Tetratricopep 95.6 0.0085 1.8E-07 39.5 2.0 32 256-295 2-33 (34)
185 KOG1585 Protein required for f 95.6 1.5 3.2E-05 42.4 17.6 93 206-303 85-178 (308)
186 PF13431 TPR_17: Tetratricopep 95.5 0.011 2.4E-07 39.0 2.3 30 88-125 1-30 (34)
187 COG4785 NlpI Lipoprotein NlpI, 95.5 0.22 4.7E-06 47.2 11.6 53 64-124 63-115 (297)
188 smart00028 TPR Tetratricopepti 95.5 0.014 3E-07 34.9 2.6 29 276-304 2-30 (34)
189 KOG4162 Predicted calmodulin-b 95.4 0.12 2.7E-06 55.9 11.1 104 65-265 683-786 (799)
190 PF13371 TPR_9: Tetratricopept 95.4 0.037 8E-07 41.5 5.3 52 206-264 9-60 (73)
191 smart00028 TPR Tetratricopepti 95.4 0.019 4.1E-07 34.2 3.0 30 234-263 2-31 (34)
192 KOG1156 N-terminal acetyltrans 95.3 0.12 2.6E-06 55.1 10.3 46 68-121 9-54 (700)
193 KOG1127 TPR repeat-containing 95.2 0.22 4.8E-06 55.5 12.4 145 68-312 564-708 (1238)
194 PF12968 DUF3856: Domain of Un 95.2 0.2 4.4E-06 43.1 9.6 78 231-308 5-88 (144)
195 PRK11906 transcriptional regul 95.2 0.31 6.7E-06 50.5 12.8 73 221-300 360-432 (458)
196 KOG0495 HAT repeat protein [RN 95.2 0.17 3.6E-06 54.3 10.9 84 207-306 633-716 (913)
197 PF10516 SHNi-TPR: SHNi-TPR; 95.1 0.032 7E-07 38.0 3.7 35 275-309 1-35 (38)
198 PF00244 14-3-3: 14-3-3 protei 95.1 1.1 2.5E-05 42.5 15.5 74 232-305 122-199 (236)
199 PF09986 DUF2225: Uncharacteri 95.1 0.42 9.2E-06 44.7 12.4 104 77-265 88-197 (214)
200 PF08631 SPO22: Meiosis protei 95.1 0.15 3.3E-06 49.2 9.7 88 205-292 6-101 (278)
201 PF13174 TPR_6: Tetratricopept 95.1 0.023 5.1E-07 35.9 2.8 29 276-304 1-29 (33)
202 COG4783 Putative Zn-dependent 95.1 0.75 1.6E-05 47.8 15.0 48 66-121 306-353 (484)
203 PF04184 ST7: ST7 protein; In 94.9 0.56 1.2E-05 49.0 13.7 63 232-300 258-320 (539)
204 PLN03081 pentatricopeptide (PP 94.9 0.8 1.7E-05 49.7 15.7 43 216-261 377-419 (697)
205 COG4785 NlpI Lipoprotein NlpI, 94.9 0.039 8.4E-07 52.1 4.7 87 206-300 72-158 (297)
206 COG4235 Cytochrome c biogenesi 94.7 0.092 2E-06 51.3 7.0 77 228-305 151-257 (287)
207 PLN03218 maturation of RBCL 1; 94.7 1.1 2.3E-05 51.5 16.5 86 206-304 663-748 (1060)
208 COG3118 Thioredoxin domain-con 94.6 0.91 2E-05 44.6 13.5 154 68-299 136-296 (304)
209 KOG1585 Protein required for f 94.6 0.51 1.1E-05 45.4 11.5 97 207-307 46-142 (308)
210 COG4783 Putative Zn-dependent 94.6 0.8 1.7E-05 47.5 13.7 80 207-301 355-434 (484)
211 KOG2471 TPR repeat-containing 94.5 0.029 6.3E-07 58.2 3.1 79 229-307 277-367 (696)
212 PLN03218 maturation of RBCL 1; 94.3 1.3 2.8E-05 50.9 16.1 166 67-303 615-782 (1060)
213 PF04212 MIT: MIT (microtubule 94.1 0.5 1.1E-05 35.8 8.7 60 63-122 2-62 (69)
214 cd02684 MIT_2 MIT: domain cont 94.0 0.49 1.1E-05 37.0 8.5 60 62-121 2-62 (75)
215 cd02678 MIT_VPS4 MIT: domain c 94.0 0.54 1.2E-05 36.5 8.7 61 62-122 2-63 (75)
216 cd02681 MIT_calpain7_1 MIT: do 93.9 0.48 1.1E-05 37.2 8.4 59 64-124 4-64 (76)
217 PF09295 ChAPs: ChAPs (Chs5p-A 93.9 0.55 1.2E-05 48.1 11.0 44 216-259 251-294 (395)
218 KOG4648 Uncharacterized conser 93.9 0.16 3.4E-06 50.9 6.8 83 215-305 113-195 (536)
219 PF02259 FAT: FAT domain; Int 93.8 2 4.4E-05 41.6 14.6 51 230-288 249-305 (352)
220 PF10602 RPN7: 26S proteasome 93.8 0.56 1.2E-05 42.5 9.8 89 213-307 17-105 (177)
221 PF10952 DUF2753: Protein of u 93.8 0.54 1.2E-05 40.6 8.9 70 235-305 3-80 (140)
222 PF13174 TPR_6: Tetratricopept 93.6 0.11 2.5E-06 32.6 3.6 30 234-263 1-30 (33)
223 KOG3617 WD40 and TPR repeat-co 93.5 1.6 3.4E-05 48.4 13.8 56 63-121 816-871 (1416)
224 PF10300 DUF3808: Protein of u 93.4 0.25 5.4E-06 51.5 7.8 87 206-303 247-333 (468)
225 KOG0551 Hsp90 co-chaperone CNS 93.2 4.4 9.6E-05 40.6 15.5 106 65-265 80-185 (390)
226 PLN03081 pentatricopeptide (PP 93.1 1.2 2.7E-05 48.2 13.0 60 233-300 494-553 (697)
227 KOG0551 Hsp90 co-chaperone CNS 93.1 0.16 3.5E-06 50.5 5.4 96 204-307 86-185 (390)
228 KOG1156 N-terminal acetyltrans 93.1 0.15 3.3E-06 54.4 5.5 77 216-304 28-104 (700)
229 cd02683 MIT_1 MIT: domain cont 93.0 0.81 1.8E-05 36.0 8.3 59 64-122 4-63 (77)
230 KOG0624 dsRNA-activated protei 92.9 0.3 6.4E-06 49.0 7.0 85 211-303 50-134 (504)
231 PF03704 BTAD: Bacterial trans 92.7 5.1 0.00011 34.1 13.9 67 206-279 76-143 (146)
232 COG3071 HemY Uncharacterized e 92.7 0.61 1.3E-05 47.3 9.0 66 230-304 325-390 (400)
233 PF04733 Coatomer_E: Coatomer 92.6 1.8 3.8E-05 42.4 12.0 89 206-302 167-263 (290)
234 PF10255 Paf67: RNA polymerase 92.6 0.16 3.6E-06 51.9 4.8 71 236-307 125-196 (404)
235 PRK10153 DNA-binding transcrip 92.4 0.47 1E-05 50.2 8.1 93 215-307 358-452 (517)
236 cd02656 MIT MIT: domain contai 92.2 1.5 3.3E-05 33.7 8.9 60 63-122 3-63 (75)
237 smart00745 MIT Microtubule Int 92.2 1.5 3.3E-05 33.7 8.9 61 62-122 4-65 (77)
238 KOG2300 Uncharacterized conser 92.0 3.8 8.1E-05 43.0 13.8 141 65-297 6-149 (629)
239 KOG1915 Cell cycle control pro 91.9 11 0.00025 39.5 16.9 120 77-260 377-498 (677)
240 KOG0376 Serine-threonine phosp 91.8 0.14 3E-06 53.0 3.2 101 65-264 3-103 (476)
241 PF11817 Foie-gras_1: Foie gra 91.8 2.5 5.5E-05 40.1 11.7 91 205-298 151-241 (247)
242 PF10300 DUF3808: Protein of u 91.7 5.6 0.00012 41.5 15.1 91 206-306 281-371 (468)
243 PLN03077 Protein ECB2; Provisi 91.5 6.5 0.00014 43.8 16.3 88 206-299 603-715 (857)
244 smart00101 14_3_3 14-3-3 homol 91.2 1.9 4.1E-05 41.3 10.1 79 232-310 124-206 (244)
245 KOG1070 rRNA processing protei 91.2 2.1 4.5E-05 49.7 11.8 84 213-312 1518-1603(1710)
246 COG4700 Uncharacterized protei 91.2 9.8 0.00021 35.5 14.2 63 230-301 157-219 (251)
247 PF13512 TPR_18: Tetratricopep 91.1 1.4 3.1E-05 38.8 8.4 70 232-306 9-78 (142)
248 COG4105 ComL DNA uptake lipopr 91.0 15 0.00034 35.3 17.3 90 207-305 86-197 (254)
249 PF14853 Fis1_TPR_C: Fis1 C-te 90.9 0.85 1.9E-05 33.3 5.8 30 276-305 2-31 (53)
250 KOG0495 HAT repeat protein [RN 90.9 2.4 5.1E-05 46.0 11.2 82 205-301 664-745 (913)
251 PF10602 RPN7: 26S proteasome 90.6 2.1 4.6E-05 38.7 9.5 94 205-304 49-142 (177)
252 cd09034 BRO1_Alix_like Protein 90.0 21 0.00046 35.2 18.4 37 273-309 249-285 (345)
253 KOG3785 Uncharacterized conser 89.9 5.6 0.00012 40.4 12.3 53 236-296 154-206 (557)
254 KOG0376 Serine-threonine phosp 89.8 0.15 3.3E-06 52.6 1.5 85 215-307 20-104 (476)
255 COG3071 HemY Uncharacterized e 89.5 16 0.00034 37.3 15.3 74 233-306 263-359 (400)
256 cd02682 MIT_AAA_Arch MIT: doma 88.9 4.1 9E-05 32.0 8.6 50 64-113 4-54 (75)
257 cd02680 MIT_calpain7_2 MIT: do 88.8 2.8 6.1E-05 32.9 7.6 44 62-105 2-45 (75)
258 PLN03077 Protein ECB2; Provisi 88.5 15 0.00033 40.9 16.1 23 69-91 427-449 (857)
259 PF07721 TPR_4: Tetratricopept 88.4 0.55 1.2E-05 28.8 2.7 24 234-257 2-25 (26)
260 cd02677 MIT_SNX15 MIT: domain 88.3 4 8.7E-05 31.9 8.2 57 63-119 3-60 (75)
261 COG4700 Uncharacterized protei 88.3 1.9 4.1E-05 40.1 7.2 72 234-305 90-190 (251)
262 PF10345 Cohesin_load: Cohesin 87.9 4.2 9.1E-05 43.7 10.9 99 206-307 28-131 (608)
263 cd02681 MIT_calpain7_1 MIT: do 87.9 3.6 7.7E-05 32.3 7.7 35 274-308 5-39 (76)
264 cd09240 BRO1_Alix Protein-inte 87.7 9.4 0.0002 38.2 12.6 34 274-307 254-287 (346)
265 KOG3364 Membrane protein invol 87.6 6.9 0.00015 34.5 9.9 83 232-318 31-116 (149)
266 KOG1550 Extracellular protein 87.6 11 0.00024 40.1 13.7 65 231-305 323-394 (552)
267 PF07721 TPR_4: Tetratricopept 87.1 0.63 1.4E-05 28.5 2.4 25 276-300 2-26 (26)
268 PF10345 Cohesin_load: Cohesin 87.1 32 0.00069 37.0 17.0 96 207-306 75-170 (608)
269 PF05843 Suf: Suppressor of fo 86.6 4 8.6E-05 39.5 9.0 81 215-303 17-98 (280)
270 KOG2047 mRNA splicing factor [ 86.0 11 0.00024 40.9 12.3 95 207-305 485-580 (835)
271 KOG1308 Hsp70-interacting prot 85.8 0.29 6.3E-06 48.9 0.5 81 216-304 131-211 (377)
272 PF04733 Coatomer_E: Coatomer 85.5 1.6 3.4E-05 42.7 5.5 95 215-317 147-243 (290)
273 PF02259 FAT: FAT domain; Int 85.5 28 0.00061 33.6 14.4 102 206-310 160-293 (352)
274 KOG4507 Uncharacterized conser 85.4 1.9 4E-05 46.2 6.2 62 235-304 644-705 (886)
275 KOG3616 Selective LIM binding 85.3 57 0.0012 36.4 17.2 74 232-308 660-739 (1636)
276 PF04184 ST7: ST7 protein; In 85.2 5.1 0.00011 42.1 9.2 98 206-305 173-289 (539)
277 cd02682 MIT_AAA_Arch MIT: doma 85.1 2.6 5.6E-05 33.1 5.5 36 274-309 5-40 (75)
278 PHA02537 M terminase endonucle 85.1 11 0.00023 36.0 10.7 113 204-319 95-227 (230)
279 KOG0508 Ankyrin repeat protein 85.1 0.68 1.5E-05 48.0 2.8 75 215-289 318-393 (615)
280 KOG3785 Uncharacterized conser 85.0 1.8 3.9E-05 43.8 5.6 83 206-302 36-118 (557)
281 cd09242 BRO1_ScBro1_like Prote 84.9 23 0.0005 35.5 13.7 36 273-308 242-277 (348)
282 KOG3617 WD40 and TPR repeat-co 84.7 2.7 5.9E-05 46.6 7.2 75 209-301 810-884 (1416)
283 KOG0545 Aryl-hydrocarbon recep 84.1 3.6 7.9E-05 39.8 7.0 83 230-312 175-267 (329)
284 cd09241 BRO1_ScRim20-like Prot 84.0 27 0.00059 35.0 13.8 35 273-307 235-269 (355)
285 KOG2047 mRNA splicing factor [ 84.0 3.5 7.5E-05 44.6 7.5 94 215-309 403-504 (835)
286 KOG2471 TPR repeat-containing 83.6 5.2 0.00011 42.1 8.4 47 231-285 333-379 (696)
287 PF03097 BRO1: BRO1-like domai 83.2 16 0.00034 36.6 11.8 37 273-309 237-273 (377)
288 PF04781 DUF627: Protein of un 82.5 29 0.00062 29.4 11.5 46 72-122 2-47 (111)
289 COG2976 Uncharacterized protei 82.4 12 0.00026 34.9 9.5 65 232-305 125-189 (207)
290 KOG4340 Uncharacterized conser 82.3 19 0.00041 36.0 11.3 32 273-304 142-173 (459)
291 KOG3616 Selective LIM binding 81.6 36 0.00078 37.8 13.9 80 215-296 748-845 (1636)
292 cd02678 MIT_VPS4 MIT: domain c 81.4 12 0.00026 28.8 8.0 36 275-310 6-41 (75)
293 cd00632 Prefoldin_beta Prefold 81.4 18 0.00039 29.7 9.5 74 239-318 15-88 (105)
294 cd02679 MIT_spastin MIT: domai 81.2 3 6.5E-05 33.0 4.5 35 273-307 6-40 (79)
295 PF04910 Tcf25: Transcriptiona 81.1 11 0.00025 38.0 9.8 96 207-302 9-130 (360)
296 PF04212 MIT: MIT (microtubule 81.0 4.9 0.00011 30.3 5.5 37 275-311 5-41 (69)
297 KOG2300 Uncharacterized conser 80.6 27 0.00059 36.9 12.3 80 205-289 336-418 (629)
298 KOG1070 rRNA processing protei 79.3 21 0.00045 42.0 11.8 188 44-307 1503-1703(1710)
299 cd09239 BRO1_HD-PTP_like Prote 78.6 74 0.0016 32.2 14.7 35 273-307 250-284 (361)
300 PF10373 EST1_DNA_bind: Est1 D 78.4 3.5 7.7E-05 38.7 5.0 45 252-304 1-45 (278)
301 KOG3081 Vesicle coat complex C 78.4 13 0.00027 36.4 8.6 85 206-298 173-264 (299)
302 KOG2561 Adaptor protein NUB1, 78.2 81 0.0018 33.0 14.6 35 233-267 267-301 (568)
303 COG1382 GimC Prefoldin, chaper 78.2 43 0.00093 28.7 11.8 77 234-316 17-93 (119)
304 PF10579 Rapsyn_N: Rapsyn N-te 77.8 12 0.00026 29.7 6.9 57 65-126 5-61 (80)
305 cd02679 MIT_spastin MIT: domai 77.8 10 0.00023 30.0 6.6 36 236-271 11-46 (79)
306 cd02683 MIT_1 MIT: domain cont 77.3 5.7 0.00012 31.2 5.0 38 274-311 5-42 (77)
307 COG3629 DnrI DNA-binding trans 77.3 18 0.0004 35.3 9.6 65 232-304 152-216 (280)
308 PF07720 TPR_3: Tetratricopept 77.2 7.5 0.00016 26.0 4.8 29 67-95 2-32 (36)
309 COG0790 FOG: TPR repeat, SEL1 76.8 53 0.0011 31.2 12.7 83 207-305 128-221 (292)
310 PF11207 DUF2989: Protein of u 76.8 15 0.00033 34.2 8.4 74 216-294 123-197 (203)
311 KOG4814 Uncharacterized conser 76.5 4.6 9.9E-05 43.7 5.5 67 236-304 357-423 (872)
312 COG2909 MalT ATP-dependent tra 75.6 62 0.0013 36.4 13.9 70 233-306 580-649 (894)
313 PF08626 TRAPPC9-Trs120: Trans 75.4 1.7E+02 0.0038 34.3 22.1 95 211-307 357-477 (1185)
314 PF04910 Tcf25: Transcriptiona 75.3 97 0.0021 31.3 18.3 96 215-316 123-234 (360)
315 cd09246 BRO1_Alix_like_1 Prote 74.4 99 0.0022 31.0 14.6 33 273-305 245-277 (353)
316 PF09670 Cas_Cas02710: CRISPR- 74.2 1.1E+02 0.0023 31.2 15.6 32 64-95 129-160 (379)
317 PF14853 Fis1_TPR_C: Fis1 C-te 74.2 7.3 0.00016 28.4 4.5 31 234-264 2-32 (53)
318 PF15015 NYD-SP12_N: Spermatog 73.4 28 0.0006 36.2 9.9 60 238-305 233-292 (569)
319 COG2976 Uncharacterized protei 73.3 14 0.0003 34.5 7.1 64 232-300 88-151 (207)
320 cd00890 Prefoldin Prefoldin is 73.3 5.7 0.00012 33.3 4.4 81 238-318 14-112 (129)
321 smart00745 MIT Microtubule Int 72.0 10 0.00023 29.0 5.3 34 275-308 8-41 (77)
322 PF11817 Foie-gras_1: Foie gra 71.7 15 0.00032 34.9 7.3 55 250-306 155-209 (247)
323 KOG1308 Hsp70-interacting prot 71.6 2.6 5.6E-05 42.3 2.1 52 62-121 110-161 (377)
324 COG4976 Predicted methyltransf 71.0 4.5 9.8E-05 38.7 3.5 72 242-321 4-75 (287)
325 PRK13184 pknD serine/threonine 71.0 18 0.00038 41.2 8.7 100 203-304 479-581 (932)
326 TIGR03504 FimV_Cterm FimV C-te 70.4 7.9 0.00017 27.2 3.8 25 70-94 3-27 (44)
327 PF14561 TPR_20: Tetratricopep 69.9 17 0.00036 29.2 6.2 54 66-119 22-90 (90)
328 PF04781 DUF627: Protein of un 68.9 48 0.001 28.0 8.8 94 206-304 10-107 (111)
329 PF05843 Suf: Suppressor of fo 68.6 61 0.0013 31.2 11.0 89 207-307 51-139 (280)
330 PF14561 TPR_20: Tetratricopep 68.0 10 0.00022 30.5 4.5 35 230-264 19-53 (90)
331 KOG1550 Extracellular protein 68.0 16 0.00034 39.0 7.3 87 204-302 261-355 (552)
332 KOG2796 Uncharacterized conser 67.9 5.2 0.00011 39.1 3.3 62 235-304 254-315 (366)
333 COG3118 Thioredoxin domain-con 66.8 36 0.00079 33.6 8.8 88 205-299 147-260 (304)
334 PF04053 Coatomer_WDAD: Coatom 66.4 11 0.00023 39.3 5.5 85 206-295 323-409 (443)
335 PF15469 Sec5: Exocyst complex 66.3 23 0.0005 31.8 7.1 76 206-318 71-146 (182)
336 TIGR03504 FimV_Cterm FimV C-te 66.2 8.2 0.00018 27.1 3.2 26 236-261 2-27 (44)
337 PF09311 Rab5-bind: Rabaptin-l 65.2 21 0.00045 32.5 6.5 49 59-107 133-181 (181)
338 KOG3060 Uncharacterized conser 64.4 32 0.0007 33.5 7.8 60 207-266 162-224 (289)
339 cd02656 MIT MIT: domain contai 63.2 19 0.00041 27.5 5.1 35 275-309 6-40 (75)
340 KOG1915 Cell cycle control pro 63.0 45 0.00097 35.3 9.0 80 215-302 89-168 (677)
341 PRK03947 prefoldin subunit alp 62.7 18 0.00039 31.1 5.5 76 240-317 23-118 (140)
342 PF07720 TPR_3: Tetratricopept 62.5 20 0.00043 23.9 4.4 24 276-299 2-25 (36)
343 COG3947 Response regulator con 61.8 43 0.00093 33.3 8.3 67 236-310 282-348 (361)
344 KOG3783 Uncharacterized conser 61.8 32 0.00069 36.6 7.9 74 231-305 447-521 (546)
345 PF05278 PEARLI-4: Arabidopsis 61.1 1.1E+02 0.0023 29.9 10.8 88 204-299 88-186 (269)
346 PF07544 Med9: RNA polymerase 61.0 56 0.0012 25.9 7.5 64 292-370 20-83 (83)
347 KOG2053 Mitochondrial inherita 61.0 31 0.00067 38.7 7.9 70 230-307 40-109 (932)
348 PF08311 Mad3_BUB1_I: Mad3/BUB 60.7 20 0.00043 30.6 5.3 79 212-302 46-126 (126)
349 smart00671 SEL1 Sel1-like repe 59.8 16 0.00035 22.9 3.6 28 276-303 2-33 (36)
350 cd02684 MIT_2 MIT: domain cont 59.0 27 0.00059 27.1 5.3 37 275-311 6-42 (75)
351 PF08238 Sel1: Sel1 repeat; I 58.3 18 0.00038 23.3 3.6 29 275-303 1-36 (39)
352 PRK10941 hypothetical protein; 58.3 80 0.0017 30.7 9.6 66 232-305 180-245 (269)
353 cd09247 BRO1_Alix_like_2 Prote 58.1 30 0.00065 34.6 6.8 32 274-305 252-283 (346)
354 KOG2709 Uncharacterized conser 56.4 23 0.00049 36.7 5.5 82 232-323 21-106 (560)
355 cd00584 Prefoldin_alpha Prefol 56.0 23 0.0005 29.9 4.9 81 238-318 14-112 (129)
356 PF12739 TRAPPC-Trs85: ER-Golg 55.3 2.5E+02 0.0054 28.7 15.9 90 214-306 277-401 (414)
357 cd09034 BRO1_Alix_like Protein 54.1 2.3E+02 0.0049 27.9 12.6 36 231-266 249-284 (345)
358 cd02677 MIT_SNX15 MIT: domain 54.0 26 0.00057 27.3 4.5 37 275-311 6-42 (75)
359 PF05053 Menin: Menin; InterP 53.7 37 0.0008 36.4 6.7 73 232-307 276-350 (618)
360 PF08424 NRDE-2: NRDE-2, neces 53.6 1.9E+02 0.004 28.5 11.6 64 243-306 112-185 (321)
361 KOG0508 Ankyrin repeat protein 52.9 3.2 7E-05 43.2 -1.0 106 207-312 261-374 (615)
362 PF15015 NYD-SP12_N: Spermatog 52.8 1.2E+02 0.0027 31.6 10.1 79 240-318 183-284 (569)
363 PF10579 Rapsyn_N: Rapsyn N-te 52.6 1.1E+02 0.0025 24.3 7.8 66 234-304 7-72 (80)
364 PF12309 KBP_C: KIF-1 binding 52.5 2.7E+02 0.0058 28.3 14.0 79 230-308 226-335 (371)
365 KOG3364 Membrane protein invol 51.3 49 0.0011 29.3 6.1 59 206-264 34-102 (149)
366 KOG2709 Uncharacterized conser 51.3 21 0.00045 36.9 4.4 33 275-307 22-54 (560)
367 KOG2610 Uncharacterized conser 51.1 51 0.0011 33.5 6.9 60 230-297 172-231 (491)
368 COG5159 RPN6 26S proteasome re 50.7 2.6E+02 0.0056 28.0 11.5 64 236-301 128-191 (421)
369 cd02680 MIT_calpain7_2 MIT: do 50.6 25 0.00053 27.6 3.8 30 278-307 9-38 (75)
370 TIGR02338 gimC_beta prefoldin, 50.1 1.5E+02 0.0032 24.5 9.1 75 239-319 19-93 (110)
371 PF14863 Alkyl_sulf_dimr: Alky 50.0 88 0.0019 27.4 7.6 52 66-125 70-121 (141)
372 PF12854 PPR_1: PPR repeat 49.7 30 0.00065 22.3 3.6 26 275-300 7-32 (34)
373 TIGR00293 prefoldin, archaeal 49.5 8.3 0.00018 32.6 1.1 75 240-317 16-110 (126)
374 PF05377 FlaC_arch: Flagella a 49.4 17 0.00038 26.8 2.6 24 348-371 16-39 (55)
375 cd09244 BRO1_Rhophilin Protein 49.1 3E+02 0.0065 27.8 16.5 37 61-97 101-146 (350)
376 KOG0276 Vesicle coat complex C 48.7 61 0.0013 35.2 7.4 84 204-292 640-725 (794)
377 smart00386 HAT HAT (Half-A-TPR 48.4 40 0.00086 20.1 3.9 31 80-118 1-31 (33)
378 cd07614 BAR_Endophilin_A2 The 48.3 2.2E+02 0.0048 27.0 10.5 47 78-125 58-104 (223)
379 PF09670 Cas_Cas02710: CRISPR- 48.0 1.8E+02 0.0039 29.5 10.6 63 237-305 135-199 (379)
380 PF09613 HrpB1_HrpK: Bacterial 47.7 1.3E+02 0.0028 27.1 8.4 70 207-291 25-94 (160)
381 PF05168 HEPN: HEPN domain; I 47.5 61 0.0013 25.8 6.0 37 62-98 4-40 (118)
382 KOG1310 WD40 repeat protein [G 47.5 42 0.00091 35.9 6.0 81 218-306 393-476 (758)
383 cd09243 BRO1_Brox_like Protein 46.8 92 0.002 31.5 8.2 36 273-308 246-281 (353)
384 KOG2041 WD40 repeat protein [G 45.6 1.1E+02 0.0023 34.1 8.7 31 229-259 792-822 (1189)
385 PF02561 FliS: Flagellar prote 45.2 82 0.0018 26.4 6.6 44 63-106 26-69 (122)
386 PF12854 PPR_1: PPR repeat 45.1 39 0.00085 21.8 3.6 26 233-258 7-32 (34)
387 cd07613 BAR_Endophilin_A1 The 45.1 2.7E+02 0.0059 26.4 10.6 48 77-125 57-104 (223)
388 PF07079 DUF1347: Protein of u 43.9 67 0.0014 33.8 6.7 62 241-311 470-545 (549)
389 COG0790 FOG: TPR repeat, SEL1 43.2 2.9E+02 0.0063 26.0 15.6 62 232-304 186-266 (292)
390 PF02064 MAS20: MAS20 protein 43.1 87 0.0019 26.8 6.3 38 59-96 56-93 (121)
391 KOG2114 Vacuolar assembly/sort 42.9 38 0.00083 37.9 5.0 50 213-262 348-397 (933)
392 cd09245 BRO1_UmRIM23-like Prot 42.8 89 0.0019 32.2 7.6 34 274-307 295-328 (413)
393 PF10805 DUF2730: Protein of u 42.6 1.9E+02 0.0042 23.8 8.6 56 292-370 34-89 (106)
394 cd07625 BAR_Vps17p The Bin/Amp 41.8 3.1E+02 0.0068 26.0 14.2 23 348-370 159-181 (230)
395 PF02996 Prefoldin: Prefoldin 41.3 65 0.0014 26.5 5.3 28 290-317 74-101 (120)
396 KOG0250 DNA repair protein RAD 40.3 2.1E+02 0.0046 33.1 10.3 123 231-371 296-426 (1074)
397 KOG4814 Uncharacterized conser 40.2 1.3E+02 0.0029 33.0 8.4 85 215-307 370-460 (872)
398 PF13281 DUF4071: Domain of un 39.6 1.3E+02 0.0028 30.8 8.0 71 206-291 196-275 (374)
399 KOG0686 COP9 signalosome, subu 38.6 62 0.0013 33.5 5.5 88 204-301 162-255 (466)
400 PRK05685 fliS flagellar protei 38.1 1.6E+02 0.0035 25.2 7.4 42 63-104 32-73 (132)
401 KOG3824 Huntingtin interacting 38.1 85 0.0018 31.6 6.2 52 59-119 110-161 (472)
402 PRK13184 pknD serine/threonine 38.0 3.4E+02 0.0073 31.2 11.7 113 71-278 480-592 (932)
403 PF04871 Uso1_p115_C: Uso1 / p 37.9 1.7E+02 0.0038 25.3 7.6 22 349-370 80-101 (136)
404 PF05010 TACC: Transforming ac 37.5 3.5E+02 0.0076 25.3 10.0 24 347-370 183-206 (207)
405 KOG3677 RNA polymerase I-assoc 37.3 24 0.00052 36.6 2.3 26 279-304 276-301 (525)
406 smart00748 HEPN Higher Eukaryt 37.2 61 0.0013 26.5 4.5 35 64-98 2-36 (113)
407 PF09325 Vps5: Vps5 C terminal 37.1 3E+02 0.0065 25.2 9.6 25 347-371 164-188 (236)
408 KOG4603 TBP-1 interacting prot 36.2 50 0.0011 30.1 3.9 22 249-270 42-63 (201)
409 PF08626 TRAPPC9-Trs120: Trans 35.9 59 0.0013 38.1 5.5 56 232-289 241-296 (1185)
410 KOG4507 Uncharacterized conser 35.8 2.4E+02 0.0053 30.9 9.4 73 230-302 210-310 (886)
411 PF14346 DUF4398: Domain of un 35.8 93 0.002 25.2 5.3 35 61-95 40-74 (103)
412 PRK09343 prefoldin subunit bet 35.3 2.8E+02 0.006 23.5 9.8 75 239-319 23-97 (121)
413 KOG2422 Uncharacterized conser 35.3 3.6E+02 0.0079 29.3 10.6 97 206-302 252-369 (665)
414 PF12753 Nro1: Nuclear pore co 34.9 50 0.0011 33.9 4.2 55 251-307 329-387 (404)
415 PF12739 TRAPPC-Trs85: ER-Golg 34.8 1.7E+02 0.0038 29.9 8.2 72 234-307 209-287 (414)
416 KOG0686 COP9 signalosome, subu 34.8 2.8E+02 0.006 28.9 9.4 65 232-301 149-213 (466)
417 KOG4056 Translocase of outer m 34.3 1.3E+02 0.0028 26.5 6.0 37 59-95 74-110 (143)
418 PF08969 USP8_dimer: USP8 dime 34.3 1.1E+02 0.0023 25.4 5.6 38 59-96 31-68 (115)
419 PF01920 Prefoldin_2: Prefoldi 34.0 33 0.00071 27.5 2.3 80 233-318 8-87 (106)
420 PF10255 Paf67: RNA polymerase 33.9 37 0.00081 35.0 3.1 62 66-127 122-183 (404)
421 PF01535 PPR: PPR repeat; Int 33.7 72 0.0016 18.9 3.4 26 235-260 2-27 (31)
422 TIGR00756 PPR pentatricopeptid 33.7 75 0.0016 19.1 3.5 25 277-301 2-26 (35)
423 COG1730 GIM5 Predicted prefold 33.7 48 0.001 29.3 3.4 73 245-317 28-118 (145)
424 COG2250 Uncharacterized conser 33.4 1.2E+02 0.0026 26.1 5.8 40 59-98 6-45 (132)
425 COG5091 SGT1 Suppressor of G2 33.2 54 0.0012 32.2 3.9 61 245-307 51-111 (368)
426 TIGR02561 HrpB1_HrpK type III 32.7 1.7E+02 0.0037 26.2 6.7 71 206-291 24-94 (153)
427 KOG0985 Vesicle coat protein c 32.6 1.8E+02 0.0038 34.0 8.1 94 213-314 1208-1318(1666)
428 PF04102 SlyX: SlyX; InterPro 32.5 2E+02 0.0043 21.9 6.3 24 348-371 27-50 (69)
429 TIGR02710 CRISPR-associated pr 32.4 5.7E+02 0.012 26.2 13.7 117 65-266 129-279 (380)
430 cd07665 BAR_SNX1 The Bin/Amphi 32.4 4.5E+02 0.0097 25.0 11.5 55 233-289 39-93 (234)
431 PF09311 Rab5-bind: Rabaptin-l 31.9 1.1E+02 0.0025 27.6 5.7 46 229-274 136-181 (181)
432 TIGR00208 fliS flagellar biosy 31.7 2.3E+02 0.0049 24.1 7.2 41 63-103 28-68 (124)
433 PF06957 COPI_C: Coatomer (COP 31.6 2.1E+02 0.0045 29.8 8.1 54 62-115 200-253 (422)
434 COG1447 CelC Phosphotransferas 31.3 2.7E+02 0.0059 23.3 7.2 57 65-121 18-98 (105)
435 PF10952 DUF2753: Protein of u 30.7 1.5E+02 0.0032 25.9 5.7 44 68-111 3-46 (140)
436 COG5040 BMH1 14-3-3 family pro 30.5 64 0.0014 30.2 3.7 51 232-288 126-179 (268)
437 PF10373 EST1_DNA_bind: Est1 D 30.4 52 0.0011 30.7 3.4 61 212-287 2-62 (278)
438 KOG0546 HSP90 co-chaperone CPR 30.1 38 0.00083 34.3 2.4 65 233-305 275-339 (372)
439 COG4976 Predicted methyltransf 29.9 75 0.0016 30.7 4.2 51 207-264 10-60 (287)
440 PF15188 CCDC-167: Coiled-coil 29.7 1.8E+02 0.004 23.4 5.8 53 295-369 7-59 (85)
441 PF07889 DUF1664: Protein of u 29.6 2E+02 0.0044 24.8 6.5 26 347-372 97-122 (126)
442 KOG2460 Signal recognition par 29.5 1.8E+02 0.0038 31.2 7.1 65 248-312 379-459 (593)
443 PF04010 DUF357: Protein of un 29.5 1.8E+02 0.004 22.6 5.7 37 59-95 28-64 (75)
444 PF13041 PPR_2: PPR repeat fam 29.4 1.2E+02 0.0025 20.7 4.3 27 234-260 4-30 (50)
445 TIGR00208 fliS flagellar biosy 28.8 3.6E+02 0.0078 22.8 8.3 76 235-313 33-118 (124)
446 COG5481 Uncharacterized conser 28.8 1.9E+02 0.0041 21.8 5.3 38 275-313 7-44 (67)
447 PF02255 PTS_IIA: PTS system, 28.3 1.8E+02 0.0038 23.7 5.7 35 65-99 13-47 (96)
448 PRK10869 recombination and rep 28.2 3.7E+02 0.008 28.8 9.6 19 206-224 215-233 (553)
449 PF08969 USP8_dimer: USP8 dime 28.1 1.3E+02 0.0027 25.0 5.0 38 231-269 36-73 (115)
450 COG3014 Uncharacterized protei 28.0 6.7E+02 0.015 25.7 11.6 69 239-307 64-157 (449)
451 KOG1953 Targeting complex (TRA 27.7 48 0.001 37.8 2.8 68 42-119 215-289 (1235)
452 COG5091 SGT1 Suppressor of G2 27.5 87 0.0019 30.8 4.2 58 207-265 54-111 (368)
453 PRK09039 hypothetical protein; 27.5 6.4E+02 0.014 25.3 14.0 70 248-317 113-182 (343)
454 KOG3824 Huntingtin interacting 27.1 86 0.0019 31.6 4.2 58 206-263 118-180 (472)
455 PRK09591 celC cellobiose phosp 27.0 1.8E+02 0.0039 24.2 5.5 35 65-99 19-53 (104)
456 PF09797 NatB_MDM20: N-acetylt 26.7 6.1E+02 0.013 25.2 10.5 92 215-314 199-291 (365)
457 KOG0739 AAA+-type ATPase [Post 26.4 1E+02 0.0022 31.0 4.6 36 62-97 6-41 (439)
458 cd09247 BRO1_Alix_like_2 Prote 26.4 5.3E+02 0.011 25.7 9.9 36 232-267 252-287 (346)
459 PF13812 PPR_3: Pentatricopept 26.4 1.6E+02 0.0034 17.8 4.1 27 234-260 2-28 (34)
460 PRK04406 hypothetical protein; 26.3 1.6E+02 0.0034 23.0 4.8 25 346-370 32-56 (75)
461 PF02064 MAS20: MAS20 protein 26.2 87 0.0019 26.8 3.6 28 236-263 66-93 (121)
462 cd08977 SusD starch binding ou 26.2 1.5E+02 0.0032 29.2 5.9 32 272-303 173-209 (359)
463 PF04912 Dynamitin: Dynamitin 26.1 2.6E+02 0.0057 28.3 7.8 73 272-372 315-387 (388)
464 TIGR00823 EIIA-LAC phosphotran 26.0 1.9E+02 0.0042 23.7 5.5 35 65-99 16-50 (99)
465 KOG3807 Predicted membrane pro 25.8 5.1E+02 0.011 26.6 9.3 108 74-299 192-299 (556)
466 KOG2518 5'-3' exonuclease [Rep 25.6 98 0.0021 33.0 4.5 41 68-116 98-138 (556)
467 cd00215 PTS_IIA_lac PTS_IIA, P 25.5 2E+02 0.0044 23.5 5.5 35 65-99 14-48 (97)
468 PF11207 DUF2989: Protein of u 25.2 1.5E+02 0.0033 27.7 5.3 60 63-127 138-197 (203)
469 COG1516 FliS Flagellin-specifi 25.1 3.8E+02 0.0082 23.4 7.4 37 63-99 28-64 (132)
470 PF15469 Sec5: Exocyst complex 25.1 1.7E+02 0.0036 26.2 5.5 37 63-99 80-119 (182)
471 PF00244 14-3-3: 14-3-3 protei 24.5 1.8E+02 0.0039 27.5 5.8 40 82-121 142-181 (236)
472 PF02184 HAT: HAT (Half-A-TPR) 24.2 1.3E+02 0.0027 19.8 3.2 28 80-116 1-28 (32)
473 TIGR00985 3a0801s04tom mitocho 24.0 2.5E+02 0.0055 24.9 6.2 38 59-96 83-121 (148)
474 PF15297 CKAP2_C: Cytoskeleton 23.9 2.3E+02 0.0049 28.8 6.6 35 270-304 135-169 (353)
475 cd07596 BAR_SNX The Bin/Amphip 23.9 5.1E+02 0.011 22.9 10.3 21 348-368 147-167 (218)
476 COG2909 MalT ATP-dependent tra 23.7 1.1E+03 0.025 26.9 17.3 79 206-289 472-551 (894)
477 PRK05685 fliS flagellar protei 23.7 4.6E+02 0.01 22.3 8.6 74 236-312 38-121 (132)
478 KOG3366 Mitochondrial F1F0-ATP 23.6 1.4E+02 0.0031 27.1 4.6 55 292-372 97-151 (172)
479 PF13041 PPR_2: PPR repeat fam 23.4 1.6E+02 0.0034 20.1 4.0 27 276-302 4-30 (50)
480 PF07106 TBPIP: Tat binding pr 22.9 2.9E+02 0.0063 24.4 6.6 29 293-321 79-107 (169)
481 PF09613 HrpB1_HrpK: Bacterial 22.7 3.5E+02 0.0075 24.4 6.9 65 230-302 7-71 (160)
482 PF06120 Phage_HK97_TLTM: Tail 22.3 2.3E+02 0.005 28.1 6.2 30 291-321 40-69 (301)
483 KOG3048 Molecular chaperone Pr 22.2 53 0.0011 29.1 1.5 80 238-318 35-126 (153)
484 cd07604 BAR_ASAPs The Bin/Amph 22.0 4.1E+02 0.0088 24.9 7.6 59 66-124 18-78 (215)
485 smart00483 POLXc DNA polymeras 22.0 1.1E+02 0.0024 30.5 4.0 37 271-307 3-39 (334)
486 PF09177 Syntaxin-6_N: Syntaxi 21.7 3.2E+02 0.007 21.9 6.1 59 291-371 37-95 (97)
487 KOG1310 WD40 repeat protein [G 21.5 4.9E+02 0.011 28.3 8.6 50 64-121 372-421 (758)
488 cd07642 BAR_ASAP2 The Bin/Amph 20.9 5E+02 0.011 24.6 7.8 44 81-124 34-78 (215)
489 PRK10454 PTS system N,N'-diace 20.8 2.6E+02 0.0057 23.7 5.5 35 65-99 30-64 (115)
490 KOG2997 F-box protein FBX9 [Ge 20.6 2E+02 0.0044 28.9 5.4 48 57-112 10-57 (366)
491 PTZ00332 paraflagellar rod pro 20.6 1.1E+03 0.023 25.4 11.0 54 205-261 207-260 (589)
492 KOG4521 Nuclear pore complex, 20.6 7.8E+02 0.017 29.3 10.4 26 70-95 924-949 (1480)
493 COG3014 Uncharacterized protei 20.5 3.6E+02 0.0078 27.6 7.1 33 232-264 124-156 (449)
494 KOG2041 WD40 repeat protein [G 20.5 3.6E+02 0.0079 30.2 7.6 67 237-303 738-824 (1189)
495 smart00777 Mad3_BUB1_I Mad3/BU 20.5 4.7E+02 0.01 22.4 7.1 76 212-300 46-124 (125)
496 PF04652 DUF605: Vta1 like; I 20.4 1.9E+02 0.0042 28.8 5.5 37 60-96 343-379 (380)
No 1
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.2e-24 Score=211.50 Aligned_cols=271 Identities=24% Similarity=0.317 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCc--cCCC
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKK--EGDS 139 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~--~~e~ 139 (372)
+-.++..|+.+|++++.+++|+.|++.|++|+++..++||+.|.+|++++|+||++||+++++++.||||.... .+++
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nale~~~~eE~ 116 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNALETESAEEE 116 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccch
Confidence 34568899999999999999999999999999999999999999999999999999999999999999996621 1111
Q ss_pred CCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHH
Q 017388 140 QQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVAR 219 (372)
Q Consensus 140 ~~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar 219 (372)
+-....+.+..-..+.+. +++ .+.+- .-. .++ .++. +..++....+++++.+..+|+.|+..|
T Consensus 117 e~~~s~e~s~e~nn~~e~--------vee---~r~~~-a~~--~ke-keEa--e~~ed~~~~e~e~dt~k~~wE~Le~sr 179 (400)
T KOG4563|consen 117 EVEKSGELSDEENNNKET--------VEE---YRYGL-ALL--EKE-KEEA--EKTEDKPAAEDEVDTMKLAWEELETSR 179 (400)
T ss_pred hhccccccchhhhccHHH--------HHH---HHhhh-hhh--hhh-hhhc--ccccCCccccchhhhhhhhhhhhhhhc
Confidence 100000000000000000 000 00000 000 000 0000 011122233456789999999999999
Q ss_pred HHHHHhcCC---------------CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHH
Q 017388 220 AIAEKHWGD---------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-HIAELNFRICL 283 (372)
Q Consensus 220 ~I~ek~~~~---------------~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r-~iAe~~~~Lg~ 283 (372)
+|-.+.... .+.+++.+..+|.-.+..++|++|+.+..++|.|.+-++++.+| .++..+..|+.
T Consensus 180 ~~~~~~~~s~~~~qe~k~~l~~~wdle~~~~l~~~~a~gias~k~eqal~d~ee~~sIs~~~l~~esrk~~a~~~~il~~ 259 (400)
T KOG4563|consen 180 VIADKKSESLEAEQEGKGDLILGWDLELADVLKLLGAHGIASGKYEQALEDAEEALSISRVDLPEESRKEIAQTVDILCS 259 (400)
T ss_pred cccchhhhccccccccccchhhhhccccchhhhccCCccccccchhhhhHHHHHHhhhhhccccHHHHHHHhhhhhhccc
Confidence 987665321 24567777777777788999999999999999999999999999 79999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccccchhccchhhhHHHHHHHHHHhhHH
Q 017388 284 CLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCG 363 (372)
Q Consensus 284 a~~~~~~~~eAi~~~ekAl~i~~~rl~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~el~~ll~ 363 (372)
.......+++...+|..--.++-.|=..++..+.... |. +-.+...+.++++|+++||
T Consensus 260 ~~~~s~~~Ee~~~~~~~~KnvLi~~e~Ev~~~~~k~~-----------d~-----------~~~es~~~~~~~elee~ip 317 (400)
T KOG4563|consen 260 AAESSLEREEIESSFSDTKNVLIEREREVKDDLEKGV-----------DD-----------NFRESECLSELKELEEMIP 317 (400)
T ss_pred cccchhHHHHHHHHHHHhhhHHHHHHHhhcccccccc-----------cc-----------cccchhHHHhhhhHHhHHH
Confidence 9888888888877777666665555444433322211 11 1134678999999999999
Q ss_pred HHHhhhcC
Q 017388 364 DLEKKASP 371 (372)
Q Consensus 364 dl~~Kied 371 (372)
.|+++|=|
T Consensus 318 ~leq~i~d 325 (400)
T KOG4563|consen 318 ELEQAILD 325 (400)
T ss_pred HHHHHHHH
Confidence 99998743
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=9.9e-17 Score=165.74 Aligned_cols=165 Identities=22% Similarity=0.151 Sum_probs=151.6
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCC
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~ 141 (372)
.+..+..+...|..|+.+++|.+|+.+|.+||.|+.+.||++||.+|.+|++++.+|+..
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~-------------------- 296 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ-------------------- 296 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--------------------
Confidence 344566666799999999999999999999999999999999999999999999999733
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 017388 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (372)
Q Consensus 142 ~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I 221 (372)
+.|..|...++.|+.|
T Consensus 297 ----------------------------------------------------------------GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 297 ----------------------------------------------------------------GKFAEAEEYCERALEI 312 (508)
T ss_pred ----------------------------------------------------------------CChHHHHHHHHHHHHH
Confidence 3788899999999999
Q ss_pred HHHhcCC-CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 017388 222 AEKHWGD-SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (372)
Q Consensus 222 ~ek~~~~-~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ek 300 (372)
+++.++. +++++..+.+++.++...++|++|+..|+++|+|+...+|++|+.++.++.+||.+|.++|+|++|.++|++
T Consensus 313 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 313 YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9997663 588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 017388 301 AISVCKSRVQ 310 (372)
Q Consensus 301 Al~i~~~rl~ 310 (372)
||.+.+...+
T Consensus 393 ai~~~~~~~~ 402 (508)
T KOG1840|consen 393 AIQILRELLG 402 (508)
T ss_pred HHHHHHhccc
Confidence 9999876544
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.61 E-value=4.8e-14 Score=145.93 Aligned_cols=159 Identities=17% Similarity=0.129 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
...+..+|..|..+|+|+.|+..|.+|+++..+.+|-.||.++....+||.+|..+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~------------------------ 254 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL------------------------ 254 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh------------------------
Confidence 45566699999999999999999999999999999999999999999999999955
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
+.|..|..+|+.|+.|++..
T Consensus 255 ------------------------------------------------------------~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 255 ------------------------------------------------------------GKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred ------------------------------------------------------------ccHHHHHHHHHHHHHHHHHh
Confidence 25778889999999999998
Q ss_pred cCC-CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 226 WGD-SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 226 ~~~-~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
.+. ++.+|.+|.+||..|..+|+|.+|..++++|+.|.+++++..|+.++..+.+++.++...++|++|+.+|+++++|
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 884 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 017388 305 CKSR 308 (372)
Q Consensus 305 ~~~r 308 (372)
+...
T Consensus 355 ~~~~ 358 (508)
T KOG1840|consen 355 YLDA 358 (508)
T ss_pred HHhh
Confidence 9843
No 4
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.51 E-value=6e-14 Score=108.90 Aligned_cols=78 Identities=26% Similarity=0.298 Sum_probs=72.7
Q ss_pred CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 229 ~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
++.++.+|++||.++..+|+|++|+.+|++||.| .+.+|++|+.++.++++||.+|...|++++|+.+|++|++|+++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 3578999999999999999999999999999999 77788899999999999999999999999999999999999874
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.36 E-value=2e-12 Score=133.49 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCch
Q 017388 213 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 292 (372)
Q Consensus 213 e~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~ 292 (372)
-+++.|..+|.+.+.-.+..|.+|++||.|+..+|++++|+.+|+.||.|. |..|++|.|+|.+|..+|+..
T Consensus 368 ~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--------P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--------PTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--------chHHHHHHhcchHHHHhhhHH
Confidence 345666677777666566777777777777777777777777777777775 345777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017388 293 EAIPYCQKAISVCKSRVQR 311 (372)
Q Consensus 293 eAi~~~ekAl~i~~~rl~~ 311 (372)
.|+.+|.+||.|-..-.+.
T Consensus 440 ~A~q~y~rAI~~nPt~AeA 458 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEA 458 (966)
T ss_pred HHHHHHHHHHhcCcHHHHH
Confidence 7777777777775554333
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.27 E-value=5.1e-11 Score=123.22 Aligned_cols=166 Identities=21% Similarity=0.219 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcC-cccCCCCccCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD-PLVSVPKKEGDSQQGSD 144 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~-vLg~~~~~~~e~~~~~~ 144 (372)
.+.+.++|.++-..|+..+|++||.+||.+ .|--|++.+++|.++.+.+..+.+ +|.. .+-
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~ly~---~al------- 381 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRLYL---KAL------- 381 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHHHH---HHH-------
Confidence 556778888888888888888888888888 477788888888888887654322 1110 000
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 017388 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (372)
Q Consensus 145 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek 224 (372)
.+++..+.+. + +.+.-.-..++|+.|...+..|+.|
T Consensus 382 -------~v~p~~aaa~--n--------------------------------NLa~i~kqqgnl~~Ai~~YkealrI--- 417 (966)
T KOG4626|consen 382 -------EVFPEFAAAH--N--------------------------------NLASIYKQQGNLDDAIMCYKEALRI--- 417 (966)
T ss_pred -------hhChhhhhhh--h--------------------------------hHHHHHHhcccHHHHHHHHHHHHhc---
Confidence 0011111000 0 0011112345777777777766655
Q ss_pred hcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 225 ~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
.|..|++|.++|.++.++|+.+.|+.+|.+|+.|. |..|++|.|||.+|.-.|+..+||..|++||.+
T Consensus 418 ----~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--------Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 418 ----KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--------PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred ----CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--------cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 57899999999999999999999999999999986 466999999999999999999999999999976
Q ss_pred H
Q 017388 305 C 305 (372)
Q Consensus 305 ~ 305 (372)
.
T Consensus 486 k 486 (966)
T KOG4626|consen 486 K 486 (966)
T ss_pred C
Confidence 3
No 7
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=3.9e-09 Score=94.15 Aligned_cols=169 Identities=15% Similarity=0.063 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCccc--CCCCccCCCCC
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQ 141 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg--~~~~~~~e~~~ 141 (372)
..+..++.+|..++..|+|++|+.+|.+++.+ +|..+.+++.+|.+++..++.+...-- .+...
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 94 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence 45778899999999999999999999999886 588889999999999988655332110 00000
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 017388 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (372)
Q Consensus 142 ~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I 221 (372)
.+... ..- . ..+...-..++++.|...++.+...
T Consensus 95 ------------~~~~~------~~~-----~-----------------------~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 95 ------------NPNNG------DVL-----N-----------------------NYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred ------------CCCCH------HHH-----H-----------------------HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 00000 000 0 0000001124566666666555532
Q ss_pred HHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 017388 222 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 222 ~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekA 301 (372)
. ..+.....+.++|.++...|+|++|+..|.+++.+.. + ...+++.+|.+|...+++++|+.+|+++
T Consensus 129 ~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 129 P-----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-----Q---RPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred c-----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 1234577899999999999999999999999998632 2 2578899999999999999999999999
Q ss_pred HHHH
Q 017388 302 ISVC 305 (372)
Q Consensus 302 l~i~ 305 (372)
+.+.
T Consensus 196 ~~~~ 199 (234)
T TIGR02521 196 QQTY 199 (234)
T ss_pred HHhC
Confidence 8873
No 8
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=1.2e-11 Score=121.18 Aligned_cols=308 Identities=28% Similarity=0.287 Sum_probs=222.8
Q ss_pred Cccccc-------hhhhhhcccCCC-ccccccccc-eeeeeeecccccccccccCCCCC-------CCCccCCch-hhhH
Q 017388 1 MAEEEG-------SQTVAEQTAQPT-ETVGTTQAS-VEATMESVTVSGTESTCNNNCET-------SGAIADGER-EKTV 63 (372)
Q Consensus 1 ~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~ 63 (372)
|+|+++ ++|++++...++ +|..++.+| ++.|++...++|+...|+|+.+. ++..++..- ++++
T Consensus 1 ~~e~sataa~as~vktl~~~~de~A~~Ts~~n~~s~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~ 80 (400)
T KOG4563|consen 1 MVEESATAAEASDVKTLTEPEDEKATGTSTENLESQKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHL 80 (400)
T ss_pred CCccchhhhhhhhhhhccccccCcCCCCCCccchhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 788877 789999988887 899999888 99999999999999999998773 334444444 7789
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHH----HHHHHHHhhCCCChhHHH-----HHHHHHHHHHHhhhhhcCcccCCCC
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSR----ALEIRVSHYGELALECVN-----AYYQYGRALLYKAQEEADPLVSVPK 134 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~----Alel~~~~~Ge~~pe~A~-----~y~~yG~ALl~~ar~es~vLg~~~~ 134 (372)
+....|+--|+.+|..++++.+|.++.. +.+..+.++|+...++-. -+|+||.+++..++.+....|+.|.
T Consensus 81 e~~eal~~YGkslLela~~e~~VL~nale~~~~eE~e~~~s~e~s~e~nn~~e~vee~r~~~a~~~kekeEae~~ed~~~ 160 (400)
T KOG4563|consen 81 ETFEALFLYGKSLLELAKEESQVLGNALETESAEEEEVEKSGELSDEENNNKETVEEYRYGLALLEKEKEEAEKTEDKPA 160 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhccccccchhhhccHHHHHHHHhhhhhhhhhhhhcccccCCcc
Confidence 9999999999999999999999999999 999999999999888877 9999999999999999988888776
Q ss_pred ccCCCCCCCCCccccc-cccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccc----c-ccccCcChH
Q 017388 135 KEGDSQQGSDKDDSVK-NAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENV----A-EADEDESDL 208 (372)
Q Consensus 135 ~~~e~~~~~~~d~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~----~-~~~ed~~dl 208 (372)
..++.++.....+... +.+..... ..+....+.++. +.....+.+..+.-.. + ....+...|
T Consensus 161 ~e~e~dt~k~~wE~Le~sr~~~~~~--~~s~~~~qe~k~----------~l~~~wdle~~~~l~~~~a~gias~k~eqal 228 (400)
T KOG4563|consen 161 AEDEVDTMKLAWEELETSRVIADKK--SESLEAEQEGKG----------DLILGWDLELADVLKLLGAHGIASGKYEQAL 228 (400)
T ss_pred ccchhhhhhhhhhhhhhhccccchh--hhcccccccccc----------chhhhhccccchhhhccCCccccccchhhhh
Confidence 5443332211111111 00000000 000000000000 0000011111111000 0 122345677
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 209 DLAWKMLDVARAIAEKHWGDSMEKVDILSALA---EVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 209 ~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LG---ev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
..+|++|.++|++...... ..++..+.+|+ ......+....+..+|+-.|-+++..+-++.++.++-.+..+.|.
T Consensus 229 ~d~ee~~sIs~~~l~~esr--k~~a~~~~il~~~~~~s~~~Ee~~~~~~~~KnvLi~~e~Ev~~~~~k~~d~~~~es~~~ 306 (400)
T KOG4563|consen 229 EDAEEALSISRVDLPEESR--KEIAQTVDILCSAAESSLEREEIESSFSDTKNVLIEREREVKDDLEKGVDDNFRESECL 306 (400)
T ss_pred HHHHHHhhhhhccccHHHH--HHHhhhhhhccccccchhHHHHHHHHHHHhhhHHHHHHHhhcccccccccccccchhHH
Confidence 7888888888877755432 13566555555 455666777778888999999999999999999999999999999
Q ss_pred HhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017388 286 EIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGES 322 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i~~~rl~~l~~~~~~~~~~ 322 (372)
.-...++++|.+++++|-.++.+..++.+.+++...+
T Consensus 307 ~~~~elee~ip~leq~i~d~k~~Ae~~ee~~~~aa~~ 343 (400)
T KOG4563|consen 307 SELKELEEMIPELEQAILDAKASAEQLEEEIKKAAGK 343 (400)
T ss_pred HhhhhHHhHHHHHHHHHHHhccchhhhhHHHHhhhhh
Confidence 9999999999999999999999999999988776553
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.12 E-value=1.8e-09 Score=114.65 Aligned_cols=167 Identities=16% Similarity=0.059 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCc--ccCCCCccCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQG 142 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~v--Lg~~~~~~~e~~~~ 142 (372)
.+..+..+|..++.+|+|++|+.+|.+++++ .|.+..+|+.+|.+++.+++.+..+ +-.+...
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------- 394 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL------- 394 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 3456778899999999999999999999988 6888999999999998876653321 0000000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 017388 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (372)
Q Consensus 143 ~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ 222 (372)
++... ..- . ..+...-..++++.|...|+.++
T Consensus 395 -----------~p~~~------~~~-----~-----------------------~lg~~~~~~g~~~~A~~~~~kal--- 426 (615)
T TIGR00990 395 -----------NSEDP------DIY-----Y-----------------------HRAQLHFIKGEFAQAGKDYQKSI--- 426 (615)
T ss_pred -----------CCCCH------HHH-----H-----------------------HHHHHHHHcCCHHHHHHHHHHHH---
Confidence 00000 000 0 00000011234555554444444
Q ss_pred HHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 017388 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (372)
Q Consensus 223 ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl 302 (372)
...+....+|..||.++..+|+|++|+..|++++.+. |..+.+|+.+|.+|...|+|++|+.+|++|+
T Consensus 427 ----~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 427 ----DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred ----HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4446678889999999999999999999999999764 3346889999999999999999999999999
Q ss_pred HHHH
Q 017388 303 SVCK 306 (372)
Q Consensus 303 ~i~~ 306 (372)
.+..
T Consensus 495 ~l~p 498 (615)
T TIGR00990 495 ELEK 498 (615)
T ss_pred hcCC
Confidence 9864
No 10
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=3.6e-09 Score=102.91 Aligned_cols=173 Identities=17% Similarity=0.013 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccC--CCCccCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVS--VPKKEGDSQQG 142 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~--~~~~~~e~~~~ 142 (372)
.+..++.+|..+...|++..|+..|.+|+++ .|..+.+|+.+|.++...++.+.++--. +.+.
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------- 127 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------- 127 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 4667899999999999999999999999998 6999999999999999888765432110 0000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 017388 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (372)
Q Consensus 143 ~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ 222 (372)
++... ... . ..+...-..+.++.|...++.++.+.
T Consensus 128 -----------~P~~~---------~a~--~-----------------------~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 128 -----------DPTYN---------YAY--L-----------------------NRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred -----------CCCCH---------HHH--H-----------------------HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 00000 000 0 00000112246666666666665432
Q ss_pred HHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----------HhcCC---------------C----Chh
Q 017388 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE----------RMVEP---------------D----SRH 273 (372)
Q Consensus 223 ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~----------~l~~~---------------~----~r~ 273 (372)
+.+ + ....+ ..+....+++++|+..|.+++.... -.++. . .+.
T Consensus 163 ---P~~-~-~~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~ 234 (296)
T PRK11189 163 ---PND-P-YRALW---LYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAER 234 (296)
T ss_pred ---CCC-H-HHHHH---HHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHH
Confidence 111 1 11111 1234456788888888876553210 01111 1 134
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 274 iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
.+++|++||.+|...|++++|+.+|++|+.+-
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999999765
No 11
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.08 E-value=6.3e-09 Score=100.51 Aligned_cols=149 Identities=22% Similarity=0.204 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
+..+...|..+...|+|.+|.++|.+|.++..+ .|. ....|..|..-|.++..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~-~~~-~~~Aa~~~~~Aa~~~k~------------------------- 87 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEK-LGD-KFEAAKAYEEAANCYKK------------------------- 87 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHh-------------------------
Confidence 444555567778889999999999999998876 443 34556666665555441
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
.++..|..+|+.|..+|.+.
T Consensus 88 ------------------------------------------------------------~~~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 88 ------------------------------------------------------------GDPDEAIECYEKAIEIYREA 107 (282)
T ss_dssp ------------------------------------------------------------TTHHHHHHHHHHHHHHHHHC
T ss_pred ------------------------------------------------------------hCHHHHHHHHHHHHHHHHhc
Confidence 15778899999999999876
Q ss_pred cCCCccHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 226 WGDSMEKVDILSALAEVALER-EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~-~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
. .....|.++..+|.++... ++|++|+..|++|+.+.+..- .......++.++|.++...++|++|+..|++.+..
T Consensus 108 G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 108 G-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp T--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred C-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3 3456899999999999999 999999999999999998764 45668899999999999999999999999998754
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.08 E-value=6.7e-09 Score=110.36 Aligned_cols=175 Identities=13% Similarity=0.145 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCccc--CCCCccCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQGS 143 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg--~~~~~~~e~~~~~ 143 (372)
+.-+..+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++.+++.+.++-- .+.+.
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------- 462 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-------- 462 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 667899999999999999999999999998 688999999999999988776543111 00000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 017388 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (372)
Q Consensus 144 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~e 223 (372)
.+... ..- -..+...-..++++.|...|+.|+.+..
T Consensus 463 ----------~P~~~------~~~----------------------------~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 463 ----------FPEAP------DVY----------------------------NYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred ----------CCCCh------HHH----------------------------HHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 00000 000 0000111234678888888888887754
Q ss_pred HhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 224 k~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
+.......+...+...+.++...++|++|+..|++||.+. +++ ..++..||.+|...|++++|+.+|++|+.
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-----p~~---~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-----PEC---DIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4322223444455555556666899999999999999873 222 35788999999999999999999999999
Q ss_pred HHHHH
Q 017388 304 VCKSR 308 (372)
Q Consensus 304 i~~~r 308 (372)
+.+..
T Consensus 571 l~~~~ 575 (615)
T TIGR00990 571 LARTE 575 (615)
T ss_pred HhccH
Confidence 97653
No 13
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.04 E-value=1.4e-09 Score=108.60 Aligned_cols=99 Identities=18% Similarity=0.264 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
+||+.|+...++-+.|-+.. ++....-.+|.+||..++-.|+|+.|+++|++.|.+..++- +.-.-|..-|.||.+|
T Consensus 209 Gdf~~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNty 285 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTY 285 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHH
Confidence 58888888776666665544 33233447899999999999999999999999999988874 2334588889999999
Q ss_pred HhCCCchHHHHHHHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
.....|+.||.||++=|.|-+.
T Consensus 286 tll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 286 TLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887543
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.00 E-value=2.1e-08 Score=89.47 Aligned_cols=166 Identities=16% Similarity=0.097 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCc--ccCCCCccCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~v--Lg~~~~~~~e~~~~~ 143 (372)
+..+..+|..++..|+|++|+.+|.+++++ +|....+++.+|.+++..++.+... +-..... .
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~- 129 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------P- 129 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------c-
Confidence 456678999999999999999999999987 4677789999999999887653321 0000000 0
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 017388 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (372)
Q Consensus 144 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~e 223 (372)
...... ... -..+...-..++++.|...+..+..+
T Consensus 130 ---------~~~~~~------~~~----------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~-- 164 (234)
T TIGR02521 130 ---------LYPQPA------RSL----------------------------ENAGLCALKAGDFDKAEKYLTRALQI-- 164 (234)
T ss_pred ---------ccccch------HHH----------------------------HHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 000000 000 00000011234566666666655543
Q ss_pred HhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 224 k~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
.+....++..+|.++...|+|++|+..|++++.+. +. ....+..++.++...++++.|..+++....
T Consensus 165 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 165 -----DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY-----NQ---TAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -----CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34457789999999999999999999999999982 22 245667889999999999999988877654
Q ss_pred H
Q 017388 304 V 304 (372)
Q Consensus 304 i 304 (372)
+
T Consensus 232 ~ 232 (234)
T TIGR02521 232 L 232 (234)
T ss_pred h
Confidence 4
No 15
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.98 E-value=9.2e-10 Score=109.79 Aligned_cols=172 Identities=17% Similarity=0.140 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccC-CCCccCCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVS-VPKKEGDSQQGS 143 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~-~~~~~~e~~~~~ 143 (372)
+|+.--++|..+-.+|.|++|+-|..+-|.+..++ |+. .--+.+||++|.+|..+|+. +|. .|.
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL-gDr-v~e~RAlYNlgnvYhakGk~----~g~~~pe--------- 158 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL-GDR-VLESRALYNLGNVYHAKGKC----TGLEAPE--------- 158 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHH-hHH-HhhhHHHhhhhhhhhhcccc----cCCCChh---------
Confidence 46666688999999999999999999999986554 442 34477899999999988654 221 000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 017388 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (372)
Q Consensus 144 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~e 223 (372)
+. |. -.++--++|+.|.++|..-+.+..
T Consensus 159 ------------------------e~-------------g~---------------f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 159 ------------------------EK-------------GA---------------FNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred ------------------------hc-------------cc---------------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 001223589999988888887776
Q ss_pred HhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 224 k~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
+. ++......||.+||..|.-.|+|++||.+++.=|.|.+++-. .-..-.+|.|||.||.+.|+|+.|++||++++.
T Consensus 187 ~l-gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD--rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 187 KL-GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD--RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred Hh-hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh--HHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 65 344566789999999999999999999999999999988742 223447899999999999999999999999887
Q ss_pred HHH
Q 017388 304 VCK 306 (372)
Q Consensus 304 i~~ 306 (372)
+-.
T Consensus 264 LAi 266 (639)
T KOG1130|consen 264 LAI 266 (639)
T ss_pred HHH
Confidence 744
No 16
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.95 E-value=5.2e-09 Score=80.97 Aligned_cols=60 Identities=32% Similarity=0.363 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~ 265 (372)
++++.|..+++.|+.++......++.++.++.+||.++..+|+|++|+..|++|++|+++
T Consensus 19 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 19 GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 378899999999999955544445778999999999999999999999999999999874
No 17
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.90 E-value=1.9e-08 Score=87.88 Aligned_cols=85 Identities=20% Similarity=0.119 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
++..|+.++..++. ..+....+|..||.++...|+|++|+..|++++.+.. .-+.+|+++|.||.
T Consensus 39 ~~~~A~~~~~~al~-------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--------~~~~a~~~lg~~l~ 103 (144)
T PRK15359 39 DYSRAVIDFSWLVM-------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--------SHPEPVYQTGVCLK 103 (144)
T ss_pred CHHHHHHHHHHHHH-------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHH
Confidence 56666666655543 3467899999999999999999999999999998743 33699999999999
Q ss_pred hCCCchHHHHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~i~~ 306 (372)
..|++++|+.+|++||.+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999998743
No 18
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=98.87 E-value=3e-09 Score=72.59 Aligned_cols=38 Identities=39% Similarity=0.758 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPD 270 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~ 270 (372)
|+||..||+|+++.++|++|+.+|++||.|++++++++
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 58999999999999999999999999999999999874
No 19
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.87 E-value=1.2e-08 Score=77.00 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS-KPQEAIPYCQKAISV 304 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~-~~~eAi~~~ekAl~i 304 (372)
.|.+|..+|.+++..++|++|+.+|.+||.+. |.-+.+|+++|.||..++ ++.+|+.+|++||.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999984 344689999999999999 799999999999986
No 20
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.85 E-value=6.1e-08 Score=86.05 Aligned_cols=126 Identities=16% Similarity=0.080 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCC
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~ 143 (372)
..+..++..|..++..|+|++|+.+|.+|+.+. ..++..+.+|+++|.++..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~---------------------- 85 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSN---------------------- 85 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHc----------------------
Confidence 468889999999999999999999999999983 23456788999999999855
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 017388 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (372)
Q Consensus 144 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~e 223 (372)
++++.|+..++.|+.+..
T Consensus 86 --------------------------------------------------------------g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 86 --------------------------------------------------------------GEHTKALEYYFQALERNP 103 (168)
T ss_pred --------------------------------------------------------------CCHHHHHHHHHHHHHhCc
Confidence 256778888888887643
Q ss_pred HhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017388 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 278 (372)
Q Consensus 224 k~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~ 278 (372)
........++.+|.++|.++...|+|..|+.+|.+++.+.++.++.++...-.+-
T Consensus 104 ~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~ 158 (168)
T CHL00033 104 FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQ 158 (168)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHH
Confidence 3322234566677777777779999999999999999999999888875443333
No 21
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=1.2e-07 Score=88.74 Aligned_cols=142 Identities=20% Similarity=0.203 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCC
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~ 142 (372)
.+.++..+.+|--|+..|++..|...+.+||++ .|....++.. +|+++..+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~--~A~~Yq~~------------------- 82 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLV--RAHYYQKL------------------- 82 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHH--HHHHHHHc-------------------
Confidence 456778899999999999999999999999998 6777666554 44444410
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 017388 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (372)
Q Consensus 143 ~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ 222 (372)
+..+.|.+++++|+.
T Consensus 83 ---------------------------------------------------------------Ge~~~A~e~YrkAls-- 97 (250)
T COG3063 83 ---------------------------------------------------------------GENDLADESYRKALS-- 97 (250)
T ss_pred ---------------------------------------------------------------CChhhHHHHHHHHHh--
Confidence 133445555555554
Q ss_pred HHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 017388 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (372)
Q Consensus 223 ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl 302 (372)
..++-+++++|.|.-.+.+|+|++|...|.+|+.- |.-+..+.++-|+|+|....|+++.|..+|+++|
T Consensus 98 -----l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 98 -----LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred -----cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 45778999999999999999999999999988753 4556778999999999999999999999999999
Q ss_pred HHHHHHH
Q 017388 303 SVCKSRV 309 (372)
Q Consensus 303 ~i~~~rl 309 (372)
.+....-
T Consensus 167 ~~dp~~~ 173 (250)
T COG3063 167 ELDPQFP 173 (250)
T ss_pred HhCcCCC
Confidence 8875543
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.83 E-value=6.1e-08 Score=108.28 Aligned_cols=162 Identities=13% Similarity=0.008 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCccc--CCCCccCCCCCCCCC
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQGSDK 145 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg--~~~~~~~e~~~~~~~ 145 (372)
.++.+|..++..|++.+|+.+|.+++.+ +|.....++.++..+...++.+.++-- .+...
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---------- 605 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---------- 605 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----------
Confidence 3678899999999999999999999876 466666777666666555554322100 00000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
+ +. ...- . ..+......++++.|...|+ +.
T Consensus 606 --------~---------P~-~~a~--~-----------------------~LA~~l~~lG~~deA~~~l~-------~A 635 (987)
T PRK09782 606 --------A---------PS-ANAY--V-----------------------ARATIYRQRHNVPAAVSDLR-------AA 635 (987)
T ss_pred --------C---------CC-HHHH--H-----------------------HHHHHHHHCCCHHHHHHHHH-------HH
Confidence 0 00 0000 0 00000011234444444444 44
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
+...|.-+.+|.+||.++...|+|++|+..|+++|.+.. ..+.+|++||.+|...|++++|+.+|++|+.+-
T Consensus 636 L~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P--------~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 636 LELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP--------DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 444567789999999999999999999999999999743 335899999999999999999999999998654
No 23
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=1.8e-07 Score=86.78 Aligned_cols=186 Identities=15% Similarity=0.065 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCccc--CCCCccCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQG 142 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg--~~~~~~~e~~~~ 142 (372)
.+..++.+|..++..|+|+.|+..|++++.+. +.+|....+++.+|.+++..++.+.+.-- ..... .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-----~- 100 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-----H- 100 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----C-
Confidence 46788999999999999999999999998873 23455668899999999988766443111 00000 0
Q ss_pred CCCccccccccCCCCCcccCCCchh-hcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 017388 143 SDKDDSVKNAVNGESSTASVSSSAE-QHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (372)
Q Consensus 143 ~~~d~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I 221 (372)
++.. ... ... .-+...-. .........+++..|...++.+...
T Consensus 101 p~~~---------~~~------~a~~~~g~~~~~---------------------~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 101 PNHP---------DAD------YAYYLRGLSNYN---------------------QIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred cCCC---------chH------HHHHHHHHHHHH---------------------hcccccCCHHHHHHHHHHHHHHHHH
Confidence 0000 000 000 00000000 0000011224566666666655543
Q ss_pred HHHhcCC----------CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCc
Q 017388 222 AEKHWGD----------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 291 (372)
Q Consensus 222 ~ek~~~~----------~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~ 291 (372)
+-..... ...+...+..+|.+++.+|+|.+|+..|++++.... +++..+.+++.+|.+|...|++
T Consensus 145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 145 YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP-----DTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC-----CCcchHHHHHHHHHHHHHcCCH
Confidence 3221100 011223456899999999999999999999998753 4577789999999999999999
Q ss_pred hHHHHHHHHHH
Q 017388 292 QEAIPYCQKAI 302 (372)
Q Consensus 292 ~eAi~~~ekAl 302 (372)
++|+.+|+...
T Consensus 220 ~~A~~~~~~l~ 230 (235)
T TIGR03302 220 DLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.81 E-value=1.3e-07 Score=101.83 Aligned_cols=161 Identities=13% Similarity=0.004 Sum_probs=114.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcC------cccCCCCccCCCCCCC
Q 017388 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD------PLVSVPKKEGDSQQGS 143 (372)
Q Consensus 70 ~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~------vLg~~~~~~~e~~~~~ 143 (372)
..+|..++..|+|++|+..|.+++++ +|..+.+++.+|.+|+..++.+.. .+-.+...
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-------- 279 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-------- 279 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------
Confidence 45678899999999999999999987 688899999999999998776421 00000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 017388 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (372)
Q Consensus 144 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~e 223 (372)
.+... ... -..+...-..++++.|...|+.++.+
T Consensus 280 ----------~P~~~---------~a~-------------------------~~lg~~l~~~g~~~eA~~~l~~al~l-- 313 (656)
T PRK15174 280 ----------NSDNV---------RIV-------------------------TLYADALIRTGQNEKAIPLLQQSLAT-- 313 (656)
T ss_pred ----------CCCCH---------HHH-------------------------HHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 00000 000 00000011235667777666666653
Q ss_pred HhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 224 k~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
.+....++..||.++...|+|++|+..|++++.... ..+..++.+|.+|...|++++|+.+|++++.
T Consensus 314 -----~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P--------~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 314 -----HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG--------VTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred -----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------cchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356778899999999999999999999999988632 2245677789999999999999999999998
Q ss_pred HH
Q 017388 304 VC 305 (372)
Q Consensus 304 i~ 305 (372)
+.
T Consensus 381 ~~ 382 (656)
T PRK15174 381 AR 382 (656)
T ss_pred hC
Confidence 83
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.80 E-value=1.1e-07 Score=102.28 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHH
Q 017388 217 VARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 296 (372)
Q Consensus 217 ~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~ 296 (372)
.|+..|++.+...|..+.++..||.++..+|+|++|+..|++++.+. |..+.++++||.+|...|++++|+.
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--------P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--------PDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555456788999999999999999999999999999863 2335789999999999999999999
Q ss_pred HHHHHHHHH
Q 017388 297 YCQKAISVC 305 (372)
Q Consensus 297 ~~ekAl~i~ 305 (372)
+|++++...
T Consensus 340 ~l~~al~~~ 348 (656)
T PRK15174 340 EFVQLAREK 348 (656)
T ss_pred HHHHHHHhC
Confidence 999998653
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=6.4e-09 Score=108.54 Aligned_cols=189 Identities=16% Similarity=0.092 Sum_probs=126.8
Q ss_pred hhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcC--cccCCCCccC
Q 017388 60 EKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEG 137 (372)
Q Consensus 60 ~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~--vLg~~~~~~~ 137 (372)
+..+-..-..++.|.+++.+=+..+|+.+|+. +-. .|+.++.++..+|++++++..++.+ +|-.+-+..
T Consensus 313 ~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-lp~-------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~- 383 (638)
T KOG1126|consen 313 ASELMELLRGLGEGYRSLSQYNCREALNLFEK-LPS-------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE- 383 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 45566677788899999999999999999998 332 3678889999999999999887654 332211100
Q ss_pred CCCCCCCCccccccccCCCCCcccCCCchh--hc-CC--CCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHH
Q 017388 138 DSQQGSDKDDSVKNAVNGESSTASVSSSAE--QH-GS--SNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAW 212 (372)
Q Consensus 138 e~~~~~~~d~~~~~~~~~e~~~~~~~~~~~--~~-~~--~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Aw 212 (372)
.. -.++ +.-.+. ... ++ +. .-.++ --+-..+--.+|
T Consensus 384 p~----rv~~-----meiyST------~LWHLq~~v~Ls~Laq~------------------------Li~~~~~sPesW 424 (638)
T KOG1126|consen 384 PY----RVKG-----MEIYST------TLWHLQDEVALSYLAQD------------------------LIDTDPNSPESW 424 (638)
T ss_pred cc----cccc-----hhHHHH------HHHHHHhhHHHHHHHHH------------------------HHhhCCCCcHHH
Confidence 00 0000 000000 000 00 00 00000 000011222334
Q ss_pred HH----------HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017388 213 KM----------LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 282 (372)
Q Consensus 213 e~----------Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg 282 (372)
.. .+.|+.+|+|.....+..+-+|..||-=+..++.||.|..+|++||.+...++ .+||.||
T Consensus 425 ca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--------nAwYGlG 496 (638)
T KOG1126|consen 425 CALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--------NAWYGLG 496 (638)
T ss_pred HHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--------HHHHhhh
Confidence 33 36667777777666778899999999999999999999999999999988887 8999999
Q ss_pred HHHHhCCCchHHHHHHHHHHHH
Q 017388 283 LCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 283 ~a~~~~~~~~eAi~~~ekAl~i 304 (372)
++|..+++++.|.-||++|+.|
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred hheeccchhhHHHHHHHhhhcC
Confidence 9999999999999999999865
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=98.78 E-value=1.8e-07 Score=98.56 Aligned_cols=83 Identities=10% Similarity=0.013 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
+++.|...++.|+.+ .|....++..++.+++..|+|++|+..|++++... ++++ +..|+.||.+|.
T Consensus 387 ~~~eAi~~~~~Al~l-------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~----~p~~---~~~~~~la~~l~ 452 (553)
T PRK12370 387 QLEEALQTINECLKL-------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH----LQDN---PILLSMQVMFLS 452 (553)
T ss_pred CHHHHHHHHHHHHhc-------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc----cccC---HHHHHHHHHHHH
Confidence 344455555554433 23334445556666777788888888877766543 1222 356777888888
Q ss_pred hCCCchHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~ 303 (372)
..|++++|+.+|++.+.
T Consensus 453 ~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 453 LKGKHELARKLTKEIST 469 (553)
T ss_pred hCCCHHHHHHHHHHhhh
Confidence 88888888888777554
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.77 E-value=5e-07 Score=89.38 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
+....++..||.++...|+|++|+..|++++.+.. .....++..|+.+|...|++++|+.+|++++.+
T Consensus 211 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 211 PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP-------EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34456666677777777777777777777665421 123455666777777777777777777766665
No 29
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=1.4e-07 Score=82.38 Aligned_cols=113 Identities=12% Similarity=-0.013 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCcc
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d~ 147 (372)
.+..+|..++..|+|++|+.+|.+++.+ .|....+|+.+|.++..++
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g------------------------- 72 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLK------------------------- 72 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHh-------------------------
Confidence 4677899999999999999999999988 6999999999999999663
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC
Q 017388 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG 227 (372)
Q Consensus 148 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~~ 227 (372)
+++.|...|+.|..
T Consensus 73 -----------------------------------------------------------~~~~A~~~y~~Al~------- 86 (144)
T PRK15359 73 -----------------------------------------------------------EYTTAINFYGHALM------- 86 (144)
T ss_pred -----------------------------------------------------------hHHHHHHHHHHHHh-------
Confidence 45555555555554
Q ss_pred CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017388 228 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 287 (372)
Q Consensus 228 ~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~ 287 (372)
..+.-+.+|+++|.++...|++++|+..|++||.+.... +..+.++|.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~--------~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD--------ASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHH
Confidence 346779999999999999999999999999999987433 4667777776654
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.74 E-value=5.1e-07 Score=89.35 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=49.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhc
Q 017388 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA 126 (372)
Q Consensus 59 ~~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es 126 (372)
.++-...+...+.+|..++..|+|++|+..|.+++++ .|.+..+|+.+|.+++..++.+.
T Consensus 28 ~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~ 87 (389)
T PRK11788 28 QQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDR 87 (389)
T ss_pred hhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHH
Confidence 3444455666778899999999999999999999997 58889999999999998876643
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=98.74 E-value=2e-07 Score=98.32 Aligned_cols=82 Identities=13% Similarity=-0.032 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA 294 (372)
++.|...|++.+...|..+.+|..||.++...|+|++|+..|++++.+... + ...++.++.++...|++++|
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-----~---~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-----R---AAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----C---hhhHHHHHHHHHhccCHHHH
Confidence 455666666665555666677777777777777777777777777766322 2 13344455556666777777
Q ss_pred HHHHHHHHHH
Q 017388 295 IPYCQKAISV 304 (372)
Q Consensus 295 i~~~ekAl~i 304 (372)
+..|++++..
T Consensus 426 ~~~~~~~l~~ 435 (553)
T PRK12370 426 IRLGDELRSQ 435 (553)
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=3.8e-08 Score=102.85 Aligned_cols=133 Identities=22% Similarity=0.226 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
...+-..|..+-.+++++.|+.||.||+.+ .|..+-+|-++|-=+.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~-------------------------- 466 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESI-------------------------- 466 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhh--------------------------
Confidence 456778999999999999999999999998 5665555555441111
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
+.+-++.|...|.+.
T Consensus 467 -----------------------------------------------------------------~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 467 -----------------------------------------------------------------ATEEFDKAMKSFRKA 481 (638)
T ss_pred -----------------------------------------------------------------hhHHHHhHHHHHHhh
Confidence 011155666777777
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
+.-.++.-.+|+-||.||+.+++|+.|.-+|++|+.|-... ......+|..|+..++.++|+..|++|+-+-
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN--------SVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc--------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 77677888999999999999999999999999999996433 3556669999999999999999999999653
No 33
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.73 E-value=2.3e-07 Score=98.94 Aligned_cols=191 Identities=14% Similarity=0.041 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCccc--CCCCccCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQGS 143 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg--~~~~~~~e~~~~~ 143 (372)
+..++..|+.++..|+|+.|+..|.+++.+ +|..+.+++.+|.+++..++.+...-- ..... . +
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~ 87 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSL-----G-Y 87 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-C
Confidence 457899999999999999999999999987 799999999999999998776443110 00000 0 0
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccc-cCcC-----hHHHHHH----
Q 017388 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEAD-EDES-----DLDLAWK---- 213 (372)
Q Consensus 144 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~-ed~~-----dl~~Awe---- 213 (372)
+.... ....... .-. . |+ .+. .- .-..... .... .+.+++.
T Consensus 88 ~~~~~--------------~~~~a~~---~~~---~---g~--~~~--a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (899)
T TIGR02917 88 PKNQV--------------LPLLARA---YLL---Q---GK--FQQ--VL--DELPGKTLLDDEGAAELLALRGLAYLGL 138 (899)
T ss_pred Chhhh--------------HHHHHHH---HHH---C---CC--HHH--HH--HhhcccccCCchhhHHHHHHHHHHHHHc
Confidence 00000 0000000 000 0 00 000 00 0000000 0001 1112222
Q ss_pred -HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCch
Q 017388 214 -MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 292 (372)
Q Consensus 214 -~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~ 292 (372)
-++.|+..|.+.....+.-..++..+|.+++..|+|++|+..+++++.+. |....+++.+|.++...|+++
T Consensus 139 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~ 210 (899)
T TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD--------PGNVDALLLKGDLLLSLGNIE 210 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHH
Confidence 14777777777766556677888889999999999999999998887752 223578888999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 017388 293 EAIPYCQKAISVCKS 307 (372)
Q Consensus 293 eAi~~~ekAl~i~~~ 307 (372)
+|+..|++++.+...
T Consensus 211 ~A~~~~~~a~~~~p~ 225 (899)
T TIGR02917 211 LALAAYRKAIALRPN 225 (899)
T ss_pred HHHHHHHHHHhhCCC
Confidence 999999999887543
No 34
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=3.3e-07 Score=99.01 Aligned_cols=83 Identities=11% Similarity=-0.042 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHH
Q 017388 216 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 295 (372)
Q Consensus 216 e~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi 295 (372)
+.|+..+++.+...++-+..++.+|.++...|+|++|+..|+++|.- ++.-+.++.++|.++...|+.++|.
T Consensus 137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 44455555555556788999999999999999999999999999981 2344799999999999999999999
Q ss_pred HHHHHHHHHHH
Q 017388 296 PYCQKAISVCK 306 (372)
Q Consensus 296 ~~~ekAl~i~~ 306 (372)
..|++|++..-
T Consensus 209 ~~~~~a~~~~~ 219 (694)
T PRK15179 209 DVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHhhC
Confidence 99999998763
No 35
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.72 E-value=1.6e-07 Score=94.05 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
+..|...|..++..|+|..|+.+|.+|+++ .|..+.+|+++|.+|+.+
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~------------------------ 49 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKL------------------------ 49 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc------------------------
Confidence 456889999999999999999999999998 688999999999999855
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
++++.|+..++.|+.+
T Consensus 50 ------------------------------------------------------------g~~~eAl~~~~~Al~l---- 65 (356)
T PLN03088 50 ------------------------------------------------------------GNFTEAVADANKAIEL---- 65 (356)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHHh----
Confidence 2567777777777665
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhC
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 288 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~ 288 (372)
.+..+.+|++||.+++.+|+|++|+.+|++||.+... + ..+++.|+.|....
T Consensus 66 ---~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~-----~---~~~~~~l~~~~~kl 117 (356)
T PLN03088 66 ---DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG-----D---SRFTKLIKECDEKI 117 (356)
T ss_pred ---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----C---HHHHHHHHHHHHHH
Confidence 2456889999999999999999999999999998642 3 24455555554443
No 36
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.7e-07 Score=90.46 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCC
Q 017388 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQ 140 (372)
Q Consensus 61 ~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~ 140 (372)
.....|..|-..|..+++.++|.+||.+|.+|+++ .|..|-.|-+=+-||..++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg------------------ 129 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLG------------------ 129 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhc------------------
Confidence 56788999999999999999999999999999998 6888888888887877662
Q ss_pred CCCCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 017388 141 QGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 220 (372)
Q Consensus 141 ~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~ 220 (372)
.+..||+-++.|+.
T Consensus 130 ------------------------------------------------------------------~~~~AVkDce~Al~ 143 (304)
T KOG0553|consen 130 ------------------------------------------------------------------EYEDAVKDCESALS 143 (304)
T ss_pred ------------------------------------------------------------------chHHHHHHHHHHHh
Confidence 45566766676665
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 221 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 221 I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
| .+...++|.+||.+|+.+|+|..|+..|++||.|-.
T Consensus 144 i-------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 144 I-------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP 180 (304)
T ss_pred c-------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence 4 356778888888888888888888888888887753
No 37
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=2.5e-07 Score=85.22 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVA-LERED--IETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~-~e~~~--y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~ 283 (372)
+++.|...|+.|..+ .++-+++|..+|.++ ...|+ +++|+..|+++|.+.... ..+++.||.
T Consensus 88 ~~~~A~~a~~~Al~l-------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~--------~~al~~LA~ 152 (198)
T PRK10370 88 DYDNALLAYRQALQL-------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE--------VTALMLLAS 152 (198)
T ss_pred CHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC--------hhHHHHHHH
Confidence 566666666665554 356789999999975 77787 599999999999986543 489999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHHH
Q 017388 284 CLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 284 a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
++...|+|++|+.+|++++.+..
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999988743
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.67 E-value=2.7e-07 Score=105.04 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=104.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCc--ccCCCCccCCCCCCCCCccc
Q 017388 71 EKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGSDKDDS 148 (372)
Q Consensus 71 ~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~v--Lg~~~~~~~e~~~~~~~d~~ 148 (372)
.+|..++..|+|++|+.+|++++.+ .|..+.+++.+|.+++.+++.+... |-...+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~------------- 332 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALAL------------- 332 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence 4589999999999999999999998 6888999999999999887654321 0000000
Q ss_pred cccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHH-----HHHHHHHHHHH
Q 017388 149 VKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAW-----KMLDVARAIAE 223 (372)
Q Consensus 149 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Aw-----e~Le~Ar~I~e 223 (372)
++.... ..... .....-.-.-.+..+. ..++.|+..|+
T Consensus 333 -----~p~~~~----~~~~~----------------------------~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 333 -----DPHSSN----RDKWE----------------------------SLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred -----CCCccc----hhHHH----------------------------HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 000000 00000 0000000000011111 12466777777
Q ss_pred HhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 224 k~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
+.....+.-+.++..||.++...|+|++|+..|+++|++... .+.+++.|+.+|.. +++++|+.++++...
T Consensus 376 ~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~--------~~~a~~~L~~l~~~-~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 376 QARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG--------NTNAVRGLANLYRQ-QSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHh-cCHHHHHHHHHhCCH
Confidence 777666677788888888888888888888888888877422 24677888888754 467888888776544
Q ss_pred H
Q 017388 304 V 304 (372)
Q Consensus 304 i 304 (372)
.
T Consensus 447 ~ 447 (1157)
T PRK11447 447 S 447 (1157)
T ss_pred H
Confidence 4
No 39
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.67 E-value=2.2e-07 Score=82.46 Aligned_cols=101 Identities=13% Similarity=0.033 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
+++.|+..|..|+.+.. .+...+.+|.+||.++...|+|++|+..|++||.+.+... ..+..++.+|+++|..+.
T Consensus 50 ~~~~A~~~~~~al~l~~----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~-~~~~~la~i~~~~~~~~~ 124 (168)
T CHL00033 50 EYAEALQNYYEAMRLEI----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP-QALNNMAVICHYRGEQAI 124 (168)
T ss_pred CHHHHHHHHHHHHhccc----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHhhHHHH
Confidence 67788888888887742 2234678999999999999999999999999999854432 234556666666666666
Q ss_pred hCCCchHHHHHHHHHHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAISVCKSRVQRL 312 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~i~~~rl~~l 312 (372)
..|++..|+..|.+|+.+++..++..
T Consensus 125 ~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 125 EQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888776554
No 40
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.66 E-value=5e-07 Score=87.30 Aligned_cols=97 Identities=23% Similarity=0.223 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
++..|-+.+..|-.++.+ .+.....+.+|...|.++... ++++|+..|++|+.+....- ..+..|.++.+||.+|.
T Consensus 50 ~~~~A~~ay~kAa~~~~~-~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~~aA~~~~~lA~~ye 125 (282)
T PF14938_consen 50 DWEKAAEAYEKAADCYEK-LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFSQAAKCLKELAEIYE 125 (282)
T ss_dssp -CHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHH
Confidence 677788889999889888 455567899999999999888 99999999999999998653 45678999999999999
Q ss_pred hC-CCchHHHHHHHHHHHHHHH
Q 017388 287 IG-SKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 287 ~~-~~~~eAi~~~ekAl~i~~~ 307 (372)
.. +++++|+.+|++|+++++.
T Consensus 126 ~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 126 EQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp CTT--HHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999864
No 41
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.64 E-value=3.1e-07 Score=77.64 Aligned_cols=85 Identities=20% Similarity=0.235 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
+++.|..+++.+..+ .+.-..++..+|.++...++|++|+..|++++.+. +.....|+.+|.+|.
T Consensus 32 ~~~~A~~~~~~~~~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 32 RYDEALKLFQLLAAY-------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--------PDDPRPYFHAAECLL 96 (135)
T ss_pred cHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHH
Confidence 455666666555443 24467899999999999999999999999999974 334689999999999
Q ss_pred hCCCchHHHHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~i~~ 306 (372)
..|+++.|+.+|++++.+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 97 ALGEPESALKALDLAIEICG 116 (135)
T ss_pred HcCCHHHHHHHHHHHHHhcc
Confidence 99999999999999998753
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.7e-07 Score=95.23 Aligned_cols=173 Identities=15% Similarity=0.099 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh--cCcccCCCCccCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE--ADPLVSVPKKEGDSQQGS 143 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~e--s~vLg~~~~~~~e~~~~~ 143 (372)
+-..+.-|-.+-..|.-++|+.||.+|..++ |.|=..++.+|.=+....-.+ +-.|+.+....
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~--------~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~------- 410 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--------PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA------- 410 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--------cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-------
Confidence 3467889999999999999999999999996 555556666665444221100 00111000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 017388 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (372)
Q Consensus 144 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~e 223 (372)
+.|.-+. . +-++-.. ....|..|...|..++....
T Consensus 411 P~Dplv~-------------~--Elgvvay------------------------------~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 411 PSDPLVL-------------H--ELGVVAY------------------------------TYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred CCcchhh-------------h--hhhheee------------------------------hHhhhHHHHHHHHHHHHHhh
Confidence 0000000 0 0000000 01367778888877774444
Q ss_pred HhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 224 k~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
..+...+.-..++.+||-++..++.|+.||..|+++|.+..+. +.+|-.+|.+|..+|+++.|+.||.+||.
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~--------~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD--------ASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc--------hhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 4444445577889999999999999999999999999987654 59999999999999999999999999997
Q ss_pred HHH
Q 017388 304 VCK 306 (372)
Q Consensus 304 i~~ 306 (372)
+-.
T Consensus 518 l~p 520 (611)
T KOG1173|consen 518 LKP 520 (611)
T ss_pred cCC
Confidence 643
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.60 E-value=5.2e-07 Score=87.76 Aligned_cols=84 Identities=12% Similarity=-0.010 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
++..|...|..|+. ..+..+.+|+.||.++...|+|++|+..|+++|++... -+.+|+++|.+|.
T Consensus 79 ~~~~A~~~~~~Al~-------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--------~~~a~~~lg~~l~ 143 (296)
T PRK11189 79 LRALARNDFSQALA-------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT--------YNYAYLNRGIALY 143 (296)
T ss_pred CHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHH
Confidence 34444444444443 34667899999999999999999999999999987532 3578999999999
Q ss_pred hCCCchHHHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~i~ 305 (372)
..|++++|+..|++++.+.
T Consensus 144 ~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999864
No 44
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=1.1e-06 Score=91.08 Aligned_cols=215 Identities=17% Similarity=0.166 Sum_probs=142.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCcccc
Q 017388 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSV 149 (372)
Q Consensus 70 ~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d~~~ 149 (372)
+..|..++..|+..+|+=+|+.|+.- .|+.++++.++|.+..+......++..- +...+- ++++-+..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL--~rcl~L--dP~NleaL 356 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISAL--RRCLEL--DPTNLEAL 356 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHH--HHHHhc--CCccHHHH
Confidence 44899999999999999999999987 7999999999999998775443332210 000000 00000000
Q ss_pred ccccCCCCCcccCCCchhhcCCCCCc-CcccC----C------------CCCCCCCccc--CCCCcc--c----------
Q 017388 150 KNAVNGESSTASVSSSAEQHGSSNNQ-DEAAD----D------------VPGDNEEDEE--GNDGEN--V---------- 198 (372)
Q Consensus 150 ~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~----d------------~~~e~~ed~e--~~~~e~--~---------- 198 (372)
.. =+++--++ -.... + +...+.+..+ .+-... .
T Consensus 357 ma----------------LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLea 420 (579)
T KOG1125|consen 357 MA----------------LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEA 420 (579)
T ss_pred HH----------------HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHH
Confidence 00 00000000 00000 0 0110111111 000000 0
Q ss_pred c--ccccCcChHHHHHHH-------HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 017388 199 A--EADEDESDLDLAWKM-------LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP 269 (372)
Q Consensus 199 ~--~~~ed~~dl~~Awe~-------Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~ 269 (372)
+ .....+.|++.++-+ +++|..+|+-.+...|.=...|++||-..-...++.+||..|++||.|++.+.
T Consensus 421 a~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV-- 498 (579)
T KOG1125|consen 421 ARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV-- 498 (579)
T ss_pred HHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee--
Confidence 0 001245677777765 48888889888887888899999999999999999999999999999998775
Q ss_pred CChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhc
Q 017388 270 DSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS-------------RVQRLLNEVKSLG 320 (372)
Q Consensus 270 ~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~-------------rl~~l~~~~~~~~ 320 (372)
.+.||||+++...|.|++|++||=.||.+.+. .+..|+..|-.+.
T Consensus 499 ------R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 499 ------RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN 556 (579)
T ss_pred ------eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence 78999999999999999999999999999887 6677776665543
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.55 E-value=9.3e-07 Score=100.77 Aligned_cols=169 Identities=15% Similarity=0.137 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCccc--CCCCccCCCCCCCCC
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQGSDK 145 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg--~~~~~~~e~~~~~~~ 145 (372)
.++.+|..++..|+|++|+.+|.+|+.+ +|..+.+++.+|.+++..++.+.+.-- .+.+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---------- 414 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---------- 414 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------
Confidence 4567799999999999999999999998 688889999999999988765432110 00000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
++... ..-. ...... ...+++.|..+++.......+.
T Consensus 415 --------~p~~~------~a~~----------------------------~L~~l~-~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 415 --------DPGNT------NAVR----------------------------GLANLY-RQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred --------CCCCH------HHHH----------------------------HHHHHH-HhcCHHHHHHHHHhCCHHHHHH
Confidence 00000 0000 000000 0011223322222111100000
Q ss_pred cCC--CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 226 WGD--SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 226 ~~~--~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
... ..-....+..+|.++...|+|++|+..|+++|.+.. ++ ..+++.||.+|...|++++|+..|++++.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-----~~---~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-----GS---VWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 011245688899999999999999999999998742 33 46899999999999999999999999987
Q ss_pred HH
Q 017388 304 VC 305 (372)
Q Consensus 304 i~ 305 (372)
+.
T Consensus 524 ~~ 525 (1157)
T PRK11447 524 QK 525 (1157)
T ss_pred cC
Confidence 53
No 46
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.54 E-value=1.5e-06 Score=77.56 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ 121 (372)
...+..++.+|..++..|+|++|+.+|.+|+.+.. .++..+.+|+.+|.+++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~ 85 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASN 85 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHc
Confidence 35678899999999999999999999999999742 2345678999999998855
No 47
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.54 E-value=7.2e-07 Score=99.84 Aligned_cols=165 Identities=13% Similarity=0.001 Sum_probs=114.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCccc--CCCCccCCCCCCCCCc
Q 017388 69 LMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQGSDKD 146 (372)
Q Consensus 69 L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg--~~~~~~~e~~~~~~~d 146 (372)
+..++.....+|+|++|+.+|.+|+++ .|. +.+|+.+|.+|..+++.+..+-- ..... .+
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l------~P--- 640 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL------EP--- 640 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CC---
Confidence 344566666779999999999999988 576 88999999999988776543110 00000 00
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 017388 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 226 (372)
Q Consensus 147 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~ 226 (372)
.... . . -..+-.--..++++.|+.+|+.|+.+
T Consensus 641 ---------d~~~---------a-----~--------------------~nLG~aL~~~G~~eeAi~~l~~AL~l----- 672 (987)
T PRK09782 641 ---------NNSN---------Y-----Q--------------------AALGYALWDSGDIAQSREMLERAHKG----- 672 (987)
T ss_pred ---------CCHH---------H-----H--------------------HHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 0000 0 0 00000011224566666666555543
Q ss_pred CCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 017388 227 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 227 ~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
.|..+.++.+||.++...|+|+.|+.+|+++|.+. |..|.+.+.+|..+....+|..|++.|+++..+-.
T Consensus 673 --~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--------P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 673 --LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--------DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 46778999999999999999999999999999887 35578888999999998888999998888887655
Q ss_pred HHH
Q 017388 307 SRV 309 (372)
Q Consensus 307 ~rl 309 (372)
..+
T Consensus 743 ~~~ 745 (987)
T PRK09782 743 DSS 745 (987)
T ss_pred cch
Confidence 444
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=2.4e-06 Score=78.68 Aligned_cols=103 Identities=24% Similarity=0.273 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
+.-++.+|..++..|+|+.|+.+|.+|+.+ .|+.+.+|+.||.+|+... |
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~-------g--------------- 122 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQA-------G--------------- 122 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc-------C---------------
Confidence 456788999999999999999999999998 6999999999999986441 0
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
......|..+|+.++.
T Consensus 123 -----------------------------------------------------------~~~~~~A~~~l~~al~----- 138 (198)
T PRK10370 123 -----------------------------------------------------------QHMTPQTREMIDKALA----- 138 (198)
T ss_pred -----------------------------------------------------------CCCcHHHHHHHHHHHH-----
Confidence 0123445555555543
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
..+.-..++++||.++.+.|+|++|+..|+++|++..
T Consensus 139 --~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 139 --LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred --hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3466788999999999999999999999999998864
No 49
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.49 E-value=3.7e-06 Score=89.74 Aligned_cols=168 Identities=17% Similarity=0.085 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCc--ccCCCCccCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQG 142 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~v--Lg~~~~~~~e~~~~ 142 (372)
.+..+..+|..++..|+|++|..+|.+++++ +|....+++.+|.+++..++.+... +-.....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 188 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLGLAQLALAENRFDEARALIDEVLTA------- 188 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 3566788999999999999999999999886 5777788889998888776553220 0000000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 017388 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (372)
Q Consensus 143 ~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ 222 (372)
++... ..- . -.+...-..++++.|...++.++.
T Consensus 189 -----------~~~~~------~~~-----~-----------------------~~~~~~~~~g~~~~A~~~~~~a~~-- 221 (899)
T TIGR02917 189 -----------DPGNV------DAL-----L-----------------------LKGDLLLSLGNIELALAAYRKAIA-- 221 (899)
T ss_pred -----------CCCCh------HHH-----H-----------------------HHHHHHHhcCCHHHHHHHHHHHHh--
Confidence 00000 000 0 000000112456666666665543
Q ss_pred HHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 017388 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (372)
Q Consensus 223 ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl 302 (372)
..+....++..+|.+++..|+|++|...|.+++.+.. ++ ..+++.+|.++...|++++|+.+|++++
T Consensus 222 -----~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l 288 (899)
T TIGR02917 222 -----LRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAP-----NS---PLAHYLKALVDFQKKNYEDARETLQDAL 288 (899)
T ss_pred -----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC---chHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2355678899999999999999999999999887532 22 3678889999999999999999999999
Q ss_pred HHHHH
Q 017388 303 SVCKS 307 (372)
Q Consensus 303 ~i~~~ 307 (372)
.+...
T Consensus 289 ~~~~~ 293 (899)
T TIGR02917 289 KSAPE 293 (899)
T ss_pred HhCCC
Confidence 87644
No 50
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.48 E-value=8.9e-07 Score=78.79 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHH
Q 017388 217 VARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 296 (372)
Q Consensus 217 ~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~ 296 (372)
-|..+|+-..-..+..++-|++||-++..+|+|.+||..|.+|+.+.. ++ +.+|+++|.||...|+.+.|..
T Consensus 53 ~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-----dd---p~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 53 GAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-----DA---PQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CC---chHHHHHHHHHHHcCCHHHHHH
Confidence 334444333333567899999999999999999999999999999874 33 3899999999999999999999
Q ss_pred HHHHHHHHH
Q 017388 297 YCQKAISVC 305 (372)
Q Consensus 297 ~~ekAl~i~ 305 (372)
.|+.||.++
T Consensus 125 aF~~Ai~~~ 133 (157)
T PRK15363 125 ALKAVVRIC 133 (157)
T ss_pred HHHHHHHHh
Confidence 999999998
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.45 E-value=2.9e-06 Score=79.59 Aligned_cols=131 Identities=17% Similarity=0.116 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCc
Q 017388 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (372)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d 146 (372)
..+..++-.+...|..+.|-+.|++|+.+ +|..++++++||.-|+.++
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--------~p~~GdVLNNYG~FLC~qg------------------------ 117 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSL--------APNNGDVLNNYGAFLCAQG------------------------ 117 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhc--------CCCccchhhhhhHHHHhCC------------------------
Confidence 44566778888999999999999999999 8999999999999999663
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 017388 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 226 (372)
Q Consensus 147 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~ 226 (372)
.++.|..+|+.|.. .
T Consensus 118 ------------------------------------------------------------~~~eA~q~F~~Al~----~- 132 (250)
T COG3063 118 ------------------------------------------------------------RPEEAMQQFERALA----D- 132 (250)
T ss_pred ------------------------------------------------------------ChHHHHHHHHHHHh----C-
Confidence 34445555555542 1
Q ss_pred CCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 017388 227 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (372)
Q Consensus 227 ~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl 302 (372)
..-...++++.|+|.+.+..|++++|..+|+++|.+..... .+...++..+...++|-.|.-+|.+-.
T Consensus 133 P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--------~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 133 PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--------PALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--------hHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11256899999999999999999999999999999976553 566777888888899999988877643
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.45 E-value=1.2e-06 Score=83.85 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
..+..||.+++..|++++|+..|++++.+.+. + ...+..+|.+|...|++++|..++++++.-++
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-----d---~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPD-----D---PLWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT---------HHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHHhcccccccccccccccccccccc-----c---cccccccccccccccccccccccccccccccC
Confidence 35778999999999999999999999876542 2 37788999999999999999999999987654
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=3.4e-06 Score=86.12 Aligned_cols=182 Identities=18% Similarity=0.147 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
...+..+|...+..++|++|+.-|++|.+| .|+.+-+|..+++++|..++.+...-+.. +..
T Consensus 394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fe-----e~k----- 455 (606)
T KOG0547|consen 394 PDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFE-----EAK----- 455 (606)
T ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-----
Confidence 678999999999999999999999999999 69999999999999999987655433210 000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
...++ . +++- ... ++.--|..+|+.|.++++.|..+-.+.
T Consensus 456 -kkFP~-----~------~Evy---~~f-------------------------AeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 456 -KKFPN-----C------PEVY---NLF-------------------------AEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred -HhCCC-----C------chHH---HHH-------------------------HHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 00000 0 0000 000 001124579999999999999876553
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
-.-....+-.-..-=.+.+..++|.+|+..+++|+++-.+. =.+|..||...-.+++.++||++|++++.+-
T Consensus 496 ~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc--------e~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC--------EQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH--------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22222222211111223446799999999999999986554 3788899999999999999999999999998
Q ss_pred HHHHHHHH
Q 017388 306 KSRVQRLL 313 (372)
Q Consensus 306 ~~rl~~l~ 313 (372)
+...+.++
T Consensus 568 rt~~E~~~ 575 (606)
T KOG0547|consen 568 RTESEMVH 575 (606)
T ss_pred HhHHHHHH
Confidence 88776664
No 54
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.38 E-value=1e-05 Score=65.85 Aligned_cols=105 Identities=21% Similarity=0.157 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
++.++.+|..++..|+|++|+.+|.+++... ..++....++|.+|.+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~------------------------ 52 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQ------------------------ 52 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhh------------------------
Confidence 4678999999999999999999999998752 22344578999999999854
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
++++.|..+|+.+...+-
T Consensus 53 ------------------------------------------------------------~~~~~A~~~~~~~~~~~p-- 70 (119)
T TIGR02795 53 ------------------------------------------------------------GKYADAAKAFLAVVKKYP-- 70 (119)
T ss_pred ------------------------------------------------------------ccHHHHHHHHHHHHHHCC--
Confidence 367777777777665431
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 263 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~ 263 (372)
..+....++..+|.++...+++++|+..|.+++...
T Consensus 71 --~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 71 --KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred --CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 123457889999999999999999999999999884
No 55
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.37 E-value=1.4e-05 Score=71.25 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
++++.|+.+++.|..+... ....+.+|.+||.++...|+|++|+..|++++.+.. ....+++.+|.+|
T Consensus 49 g~~~~A~~~~~~al~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~ 116 (172)
T PRK02603 49 GEYAEALENYEEALKLEED----PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--------KQPSALNNIAVIY 116 (172)
T ss_pred CCHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHH
Confidence 3677888888887766432 233578999999999999999999999999999743 3357778888888
Q ss_pred HhCCCchHHHHHHHHHHHHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKAISVCKSRVQRL 312 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i~~~rl~~l 312 (372)
...+++..|...+.+|+..++.-+..+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~ 143 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYW 143 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHH
Confidence 877765444444444444444433333
No 56
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.36 E-value=4.1e-05 Score=66.45 Aligned_cols=139 Identities=23% Similarity=0.131 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCC
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~ 141 (372)
..+.+..++......+..+++..+...|.+ +.+.|+.. +--..+++.+|++++..
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~----l~~~~~~s-~ya~~A~l~lA~~~~~~-------------------- 61 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQ----LAKDYPSS-PYAALAALQLAKAAYEQ-------------------- 61 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH----HHHHCCCC-hHHHHHHHHHHHHHHHC--------------------
Confidence 345677888888888889999988654444 44445543 44567777788877733
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 017388 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (372)
Q Consensus 142 ~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I 221 (372)
++|+.|...|+.+..-
T Consensus 62 ----------------------------------------------------------------g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 62 ----------------------------------------------------------------GDYDEAKAALEKALAN 77 (145)
T ss_pred ----------------------------------------------------------------CCHHHHHHHHHHHHhh
Confidence 3677777766665542
Q ss_pred HHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 017388 222 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 222 ~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekA 301 (372)
..+ ..-..-++..||.|++..|+|++|+..++. + +..+.-+..+..+|.+|...|++++|+..|++|
T Consensus 78 ---~~d-~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~--~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 78 ---APD-PELKPLARLRLARILLQQGQYDEALATLQQ-------I--PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred ---CCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------c--cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 111 122456788999999999999999999865 1 233345678888999999999999999999998
Q ss_pred H
Q 017388 302 I 302 (372)
Q Consensus 302 l 302 (372)
|
T Consensus 145 l 145 (145)
T PF09976_consen 145 L 145 (145)
T ss_pred C
Confidence 6
No 57
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.36 E-value=2.4e-05 Score=86.32 Aligned_cols=100 Identities=16% Similarity=0.081 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
+++..|...++.+..++... +.....+.++.+||.+++.+|+++.|...+++++.+.....+..++..+.++..+|.++
T Consensus 505 G~~~~A~~~~~~al~~~~~~-g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 505 GELARALAMMQQTEQMARQH-DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhh-cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 47888889999999888764 33344577899999999999999999999999999998876655666667788899999
Q ss_pred HhCCCchHHHHHHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i~~ 306 (372)
...|++++|..++++++.+.+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhh
Confidence 999999999999999988755
No 58
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=1.8e-06 Score=89.34 Aligned_cols=134 Identities=12% Similarity=0.113 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
++-...+|..|+-.|+|++|++||+.||.. .|....+++.||-+|-.-
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~------------------------ 477 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANG------------------------ 477 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCC------------------------
Confidence 445568999999999999999999999998 599999999999777611
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
+.. +.|...|.|.
T Consensus 478 ------------------------------------------------------------~~s-------~EAIsAY~rA 490 (579)
T KOG1125|consen 478 ------------------------------------------------------------NRS-------EEAISAYNRA 490 (579)
T ss_pred ------------------------------------------------------------ccc-------HHHHHHHHHH
Confidence 011 2234455555
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHhCCCchHHHHHH
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHI--AELNFRICLCLEIGSKPQEAIPYC 298 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~i--Ae~~~~Lg~a~~~~~~~~eAi~~~ 298 (372)
+..+|..+++..+||..++.+|.|.+|+++|-.||.|+++......-.. -.+|-.|-+++...++.|-+...+
T Consensus 491 LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 491 LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 5557889999999999999999999999999999999998554322211 245555667777778777554443
No 59
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=1.4e-06 Score=84.30 Aligned_cols=98 Identities=17% Similarity=0.074 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA 294 (372)
|+.|+..|.+.....|.-|--|.+-+-+|+.+|.|+.||.+.++||.|-..+ ..+|.+||++|.-+|+|.+|
T Consensus 97 Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--------skay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 97 YQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--------SKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--------HHHHHHHHHHHHccCcHHHH
Confidence 4444445555444456778889999999999999999999999999996554 69999999999999999999
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHhhc
Q 017388 295 IPYCQKAISV------CKSRVQRLLNEVKSLG 320 (372)
Q Consensus 295 i~~~ekAl~i------~~~rl~~l~~~~~~~~ 320 (372)
+..|++||+| ++..|...+..+....
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999965 6677776666665543
No 60
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.34 E-value=8.4e-07 Score=59.93 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH 273 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~ 273 (372)
+|.++++||.++..+|+|++|+..|++++.|+++++|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 478999999999999999999999999999999999999984
No 61
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.34 E-value=1.7e-06 Score=86.61 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=73.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
++|..|.+.|..|+.+ .+..+.+|.++|.+++.+|+|++|+.+|++||.+.. ..+.+|++||.+|
T Consensus 16 ~~~~~Ai~~~~~Al~~-------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--------~~~~a~~~lg~~~ 80 (356)
T PLN03088 16 DDFALAVDLYTQAIDL-------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP--------SLAKAYLRKGTAC 80 (356)
T ss_pred CCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------CCHHHHHHHHHHH
Confidence 5788887777777653 345688999999999999999999999999999854 3468999999999
Q ss_pred HhCCCchHHHHHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i~ 305 (372)
..+|+|++|+.+|++++.+.
T Consensus 81 ~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999764
No 62
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.31 E-value=4.6e-06 Score=67.96 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
++++.|...|..++..+ ++ .+....+++.+|.++...++|++|+..|++++... |+++.++.+++.+|.+|
T Consensus 16 ~~~~~A~~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKY---PK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSPKAPDALLKLGMSL 86 (119)
T ss_pred CCHHHHHHHHHHHHHHC---CC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCCcccHHHHHHHHHH
Confidence 57888888777776543 22 24467899999999999999999999999999764 46666788999999999
Q ss_pred HhCCCchHHHHHHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i~~ 306 (372)
...+++++|+.+|++++....
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCc
Confidence 999999999999999888643
No 63
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.31 E-value=2.4e-06 Score=87.16 Aligned_cols=72 Identities=10% Similarity=0.192 Sum_probs=63.7
Q ss_pred CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 229 ~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
.+..+..|++||.++...|+|++|+..|++||.|.. ++.....+|||||.||..+|++++|+.+|++||++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-----d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP-----NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 367788999999999999999999999999999963 443334679999999999999999999999999973
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.7e-06 Score=85.65 Aligned_cols=172 Identities=22% Similarity=0.214 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccC--CCCccCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVS--VPKKEGDSQQGS 143 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~--~~~~~~e~~~~~ 143 (372)
+...+.-|.=|+-.|+|.+|..+|++|..| .|..|+++..||.++...+..+.++-.. +.+
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--------- 374 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--------- 374 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHH---------
Confidence 567788898899999999999999999998 7899999999999998665443321110 000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 017388 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (372)
Q Consensus 144 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~e 223 (372)
.. +.+.- |. ..- +-..-.-.++.+|-.++..|..|+
T Consensus 375 --------l~-~G~hl----P~------LYl------------------------gmey~~t~n~kLAe~Ff~~A~ai~- 410 (611)
T KOG1173|consen 375 --------LM-PGCHL----PS------LYL------------------------GMEYMRTNNLKLAEKFFKQALAIA- 410 (611)
T ss_pred --------hc-cCCcc----hH------HHH------------------------HHHHHHhccHHHHHHHHHHHHhcC-
Confidence 00 00000 00 000 000001235666666666666654
Q ss_pred HhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 224 k~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
|.-.-+++-+|-|....+.|.+|+.+|+.+|...+.+.+ +.+.-..++.|||-+|++.++|++||.+||+||.
T Consensus 411 ------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 411 ------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred ------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344567889999999999999999999999966666554 4447788899999999999999999999999986
Q ss_pred HH
Q 017388 304 VC 305 (372)
Q Consensus 304 i~ 305 (372)
+.
T Consensus 484 l~ 485 (611)
T KOG1173|consen 484 LS 485 (611)
T ss_pred cC
Confidence 54
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=3.3e-06 Score=86.28 Aligned_cols=186 Identities=16% Similarity=0.154 Sum_probs=127.8
Q ss_pred CCCCCCccCCchhhhHHHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 017388 48 CETSGAIADGEREKTVEFAD--ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (372)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~a~--~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~e 125 (372)
+|.-++..|++....+..+. -|+.+|..++...+-.+-...|..|..+ .|+..++||.=|..++-+.+++
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHH
Confidence 44556667888887766432 2899999999999999999999999998 7999999999999999887664
Q ss_pred cCcccCCCCccCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCc
Q 017388 126 ADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDE 205 (372)
Q Consensus 126 s~vLg~~~~~~~e~~~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~ 205 (372)
..+--. + ++...++. --.
T Consensus 412 ~A~aDF--------------~---------------------Kai~L~pe---------------------------~~~ 429 (606)
T KOG0547|consen 412 EAIADF--------------Q---------------------KAISLDPE---------------------------NAY 429 (606)
T ss_pred HHHHHH--------------H---------------------HHhhcChh---------------------------hhH
Confidence 432110 0 00000000 012
Q ss_pred ChHHHHHHHHHHHH-----HHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017388 206 SDLDLAWKMLDVAR-----AIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFR 280 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar-----~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~ 280 (372)
...|++.-.+...+ ..|+.....-|..+.||+..|+|..++++|++|++.|.+|+.+-+..-+ -+..++..-++
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~-~~v~~~plV~K 508 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL-IIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc-ccccchhhhhh
Confidence 34455544443332 2332222223678999999999999999999999999999998765221 12233444444
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHH
Q 017388 281 ICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 281 Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
--+++++.++++.|+..+++|+++
T Consensus 509 a~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 509 ALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred hHhhhchhhhHHHHHHHHHHHHcc
Confidence 445667889999999999999975
No 66
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.30 E-value=4.7e-05 Score=84.05 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=81.7
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017388 205 ESDLDLAWKMLDVARAIAEKHWGD-SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (372)
Q Consensus 205 ~~dl~~Awe~Le~Ar~I~ek~~~~-~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~ 283 (372)
.+++..|...++.++.+....... .+..+.++..+|.++...|++++|...+.+++.+..... .+..+.++..+|.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~ 620 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAK 620 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHH
Confidence 368899999999999988776432 233456688899999999999999999999999987543 2345678889999
Q ss_pred HHHhCCCchHHHHHHHHHHHHHH
Q 017388 284 CLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 284 a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
++...|+++.|..++.+++.+..
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999988754
No 67
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.29 E-value=2e-05 Score=82.71 Aligned_cols=142 Identities=18% Similarity=0.109 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCC
Q 017388 65 FADELMEKGTNALKESD---YGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gd---y~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~ 141 (372)
.|-.++-+|..++..++ +..|+.||++|+++ .|..|.+|-.++.++.-.... + +.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~-----~--~~------- 395 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQ-----Q--PL------- 395 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhc-----C--Cc-------
Confidence 57788889988887766 88999999999999 799999888887776533111 0 00
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 017388 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 221 (372)
Q Consensus 142 ~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I 221 (372)
+..++..+...+..+..+
T Consensus 396 --------------------------------------------------------------~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 396 --------------------------------------------------------------DEKQLAALSTELDNIVAL 413 (517)
T ss_pred --------------------------------------------------------------cHHHHHHHHHHHHHhhhc
Confidence 012344444444433222
Q ss_pred HHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 017388 222 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 222 ~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekA 301 (372)
...+..+.+|..+|.++.-.|+|++|...|++|+.+.. . +.+|+.+|.+|.+.|++++|+++|++|
T Consensus 414 -----~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--------s-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 414 -----PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--------S-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred -----ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------C-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11223468899999999999999999999999999972 2 689999999999999999999999999
Q ss_pred HHH
Q 017388 302 ISV 304 (372)
Q Consensus 302 l~i 304 (372)
+.+
T Consensus 480 ~~L 482 (517)
T PRK10153 480 FNL 482 (517)
T ss_pred Hhc
Confidence 875
No 68
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.27 E-value=2e-06 Score=64.09 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 237 SALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 237 ~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
+.+|.+++..|+|++|+..|+++|... |.-+.+++.||.+|...|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 368999999999999999999998765 456799999999999999999999999999976
No 69
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=4.9e-05 Score=64.05 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
+..++.+|..++..|+|.+|..+|.+++.+ +|....+++.+|.+++..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~----------------------- 65 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLK----------------------- 65 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHH-----------------------
Confidence 345788999999999999999999999887 5888899999999999662
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
++..|..+++.+..+
T Consensus 66 -------------------------------------------------------------~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 66 -------------------------------------------------------------EYEEAIDAYALAAAL---- 80 (135)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHhc----
Confidence 455666666655543
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
.+.....|..+|.++...|+|+.|+..|++++.+.+
T Consensus 81 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 81 ---DPDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 355688999999999999999999999999999863
No 70
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.26 E-value=4.9e-06 Score=65.42 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
+++..|..+++........ .. -..++..||.++..+|+|++|+..+++ +.+... ...+++.+|.||
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--------~~~~~~l~a~~~ 68 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPT----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--------NPDIHYLLARCL 68 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCG----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--------HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCC----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--------CHHHHHHHHHHH
Confidence 4677776666665544322 11 456788899999999999999999999 555443 258888999999
Q ss_pred HhCCCchHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKA 301 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekA 301 (372)
..+++|++|+.+|++|
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999999886
No 71
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.3e-05 Score=80.50 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
+++..|.+.+-.|+.|=-. +..-.|.+|.++|.|++..|+..+||.+...||.|-..+. .+|...|.||
T Consensus 263 G~y~~A~E~Yteal~idP~---n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi--------kall~ra~c~ 331 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPS---NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI--------KALLRRANCH 331 (486)
T ss_pred cchhHHHHHHHHhhcCCcc---ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH--------HHHHHHHHHH
Confidence 6888888888877766322 2345899999999999999999999999999999987765 9999999999
Q ss_pred HhCCCchHHHHHHHHHHHHH-----HHHHHHHHHHHHh
Q 017388 286 EIGSKPQEAIPYCQKAISVC-----KSRVQRLLNEVKS 318 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i~-----~~rl~~l~~~~~~ 318 (372)
..+++|++|++.|++|+..- +..+.+.+..|+.
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 99999999999999999763 3445555555553
No 72
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.17 E-value=8.3e-06 Score=91.14 Aligned_cols=163 Identities=22% Similarity=0.182 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCC
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~ 142 (372)
...++.....|...+..|.|.+|-+ ..+++.++...||.+||+++..|-.+.+.+..++
T Consensus 929 ~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~-------------------- 987 (1236)
T KOG1839|consen 929 VSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLG-------------------- 987 (1236)
T ss_pred cchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhc--------------------
Confidence 4678899999999999999999999 9999999999999999999999999998887552
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 017388 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (372)
Q Consensus 143 ~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ 222 (372)
+.+.|..+-..|..|+
T Consensus 988 ----------------------------------------------------------------d~~~Ai~~~~ka~ii~ 1003 (1236)
T KOG1839|consen 988 ----------------------------------------------------------------DNQEAIAQQRKACIIS 1003 (1236)
T ss_pred ----------------------------------------------------------------chHHHHHhcccceeee
Confidence 4456666667888888
Q ss_pred HHhcC-CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 017388 223 EKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 223 ek~~~-~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekA 301 (372)
+|..+ ++++.+..|.+|+......++-..|+..+.+++.+..-.+|++||..|.+..+|+..+.-.++++.|+.+.+.|
T Consensus 1004 eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1004 ERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred chhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 88877 46889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 017388 302 ISVCKSRVQ 310 (372)
Q Consensus 302 l~i~~~rl~ 310 (372)
+++-+..++
T Consensus 1084 ~a~~~~v~g 1092 (1236)
T KOG1839|consen 1084 LAKNKKVLG 1092 (1236)
T ss_pred HHHHhhhcC
Confidence 986555443
No 73
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.16 E-value=2.9e-05 Score=85.06 Aligned_cols=80 Identities=18% Similarity=0.023 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
+++.|..+|+.+... .+..+. +..||.++...|++.+|+..|++++.+.+. -..+++.+|.++.
T Consensus 98 ~~~eA~~~l~~~l~~-------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~--------~~~~~~~la~~l~ 161 (765)
T PRK10049 98 QYDEALVKAKQLVSG-------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ--------TQQYPTEYVQALR 161 (765)
T ss_pred CHHHHHHHHHHHHHh-------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHH
Confidence 555665555555443 345566 999999999999999999999999998643 3578888999999
Q ss_pred hCCCchHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAI 302 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl 302 (372)
..+..+.|+..+++++
T Consensus 162 ~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 162 NNRLSAPALGAIDDAN 177 (765)
T ss_pred HCCChHHHHHHHHhCC
Confidence 9999999999888544
No 74
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.15 E-value=2.2e-05 Score=58.51 Aligned_cols=97 Identities=25% Similarity=0.325 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCcc
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d~ 147 (372)
.++.+|..++..|+|.+|+.+|.+++.+ .|....+++.+|.++...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~------------------------- 48 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLG------------------------- 48 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHH-------------------------
Confidence 3678999999999999999999999987 3444578888998888552
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC
Q 017388 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG 227 (372)
Q Consensus 148 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~~ 227 (372)
+++.|...++.+..+.
T Consensus 49 -----------------------------------------------------------~~~~a~~~~~~~~~~~----- 64 (100)
T cd00189 49 -----------------------------------------------------------KYEEALEDYEKALELD----- 64 (100)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHHhCC-----
Confidence 4555666666555442
Q ss_pred CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017388 228 DSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 263 (372)
Q Consensus 228 ~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~ 263 (372)
+....++..+|.++...++++.|+..|.+++.+.
T Consensus 65 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 65 --PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred --CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 2223789999999999999999999999988753
No 75
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.15 E-value=6e-05 Score=67.17 Aligned_cols=103 Identities=13% Similarity=0.117 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCC
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~ 142 (372)
.+....+...|..++..|+|++|..+|+-.|.+ .|.++..||.+|.++..++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g-------------------- 83 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQK-------------------- 83 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHh--------------------
Confidence 345678889999999999999999999999999 7999999999999998662
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 017388 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (372)
Q Consensus 143 ~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ 222 (372)
++..|...+.+|..+
T Consensus 84 ----------------------------------------------------------------~~~~AI~aY~~A~~L- 98 (157)
T PRK15363 84 ----------------------------------------------------------------HWGEAIYAYGRAAQI- 98 (157)
T ss_pred ----------------------------------------------------------------hHHHHHHHHHHHHhc-
Confidence 566666666655543
Q ss_pred HHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 223 ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
.++-+..|.++|.+++..|+.+.|...|+.|+.+..
T Consensus 99 ------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 99 ------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 456788999999999999999999999999999983
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.13 E-value=5.2e-05 Score=74.17 Aligned_cols=88 Identities=11% Similarity=0.022 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA 294 (372)
++.|..+|.+.....+..+.++..||.++.+.|++++|+..|++++.+... +.......|+.+|.+|...|++++|
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHH
Confidence 567778888877666667889999999999999999999999999987643 2233456788999999999999999
Q ss_pred HHHHHHHHHHHH
Q 017388 295 IPYCQKAISVCK 306 (372)
Q Consensus 295 i~~~ekAl~i~~ 306 (372)
+.+|++++....
T Consensus 206 ~~~~~~~~~~~~ 217 (355)
T cd05804 206 LAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHhcccc
Confidence 999999976544
No 77
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.12 E-value=3.7e-05 Score=83.77 Aligned_cols=74 Identities=12% Similarity=0.064 Sum_probs=57.2
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 309 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl 309 (372)
.-.+..++.+|..|..+|+|++|-.+|.+|+..-. ++ ....|+.||..|...+.++.|+-+|++.+.......
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-----d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-----DN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----CC--ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence 45677888888888888888888888888876632 22 456788888888888888888888888888876643
Q ss_pred H
Q 017388 310 Q 310 (372)
Q Consensus 310 ~ 310 (372)
.
T Consensus 377 e 377 (1018)
T KOG2002|consen 377 E 377 (1018)
T ss_pred H
Confidence 3
No 78
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.10 E-value=6.3e-06 Score=55.53 Aligned_cols=41 Identities=29% Similarity=0.279 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALE 106 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe 106 (372)
|..+.++|..+..+|+|++|..+|.++++++.+.||+.||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 67889999999999999999999999999999999999995
No 79
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=4.3e-05 Score=77.83 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHH
Q 017388 217 VARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 296 (372)
Q Consensus 217 ~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~ 296 (372)
-|+--|+|.....|.=...+..||++|...++.++|+.+|++|+..-.- -..+|++||..|...+++++|..
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt--------e~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT--------EGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHHHHhHHHHHH
Confidence 3555667776666777889999999999999999999999999987532 25889999999999999999999
Q ss_pred HHHHHHHHH
Q 017388 297 YCQKAISVC 305 (372)
Q Consensus 297 ~~ekAl~i~ 305 (372)
+|++.+.+.
T Consensus 488 ~yek~v~~~ 496 (559)
T KOG1155|consen 488 YYEKYVEVS 496 (559)
T ss_pred HHHHHHHHH
Confidence 999999854
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.06 E-value=4.8e-05 Score=74.43 Aligned_cols=46 Identities=11% Similarity=-0.077 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~a 122 (372)
.+..+|..++..|++++|..+|.++++. +|....++.. |.+++.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~ 90 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLG 90 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhc
Confidence 3556889999999999999999999987 5666666665 66666554
No 81
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=8.5e-05 Score=76.70 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~ 144 (372)
.+..+...|+.+..+++|+.|+.+|+++|.-.+. |++-.-+..+-+++-...+.. +++ |..+.+
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt------~~~ls~lk~~Ek~~k~~e~~a--~~~--pe~A~e------ 360 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT------PDLLSKLKEAEKALKEAERKA--YIN--PEKAEE------ 360 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC------HHHHHHHHHHHHHHHHHHHHH--hhC--hhHHHH------
Confidence 4666667899999999999999999999887653 666555555555554432210 000 100000
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 017388 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (372)
Q Consensus 145 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek 224 (372)
.... |.+- =-.+||..|...|..|+.
T Consensus 361 -----------------------~r~k-----------Gne~----------------Fk~gdy~~Av~~YteAIk---- 386 (539)
T KOG0548|consen 361 -----------------------EREK-----------GNEA----------------FKKGDYPEAVKHYTEAIK---- 386 (539)
T ss_pred -----------------------HHHH-----------HHHH----------------HhccCHHHHHHHHHHHHh----
Confidence 0000 0000 012588888888887553
Q ss_pred hcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 225 ~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
-.|.-+..|.|.|-.|+.+++|..|+.|.++|+++ +|.....|++-|.|+..+.+|+.|++.|+.++..
T Consensus 387 ---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 387 ---RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred ---cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23667999999999999999999999999999999 4555699999999999999999999999999976
Q ss_pred H
Q 017388 305 C 305 (372)
Q Consensus 305 ~ 305 (372)
=
T Consensus 456 d 456 (539)
T KOG0548|consen 456 D 456 (539)
T ss_pred C
Confidence 4
No 82
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.00 E-value=1.9e-05 Score=58.81 Aligned_cols=85 Identities=25% Similarity=0.261 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
+++..|...++.+..++ +....++..+|.++...++|++|+..|++++.+.... ..+++.+|.++
T Consensus 14 ~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~ 78 (100)
T cd00189 14 GDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN--------AKAYYNLGLAY 78 (100)
T ss_pred hcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--------hhHHHHHHHHH
Confidence 35666665555554432 2334789999999999999999999999999874322 27899999999
Q ss_pred HhCCCchHHHHHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i~ 305 (372)
...++++.|+.+|.+++.+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 79 YKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHhHHHHHHHHHHHHccC
Confidence 99999999999999988653
No 83
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.99 E-value=3.7e-05 Score=74.11 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCC---CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCc
Q 017388 215 LDVARAIAEKHWGD---SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 291 (372)
Q Consensus 215 Le~Ar~I~ek~~~~---~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~ 291 (372)
++.|+..|.+.... ......+|+.||.++...|+|+.|+..|++.+... |+|+...+++++||.+|...|++
T Consensus 159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHHHHHHHHcCCH
Confidence 35555566555432 23457899999999999999999999999998876 47888999999999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 017388 292 QEAIPYCQKAISVC 305 (372)
Q Consensus 292 ~eAi~~~ekAl~i~ 305 (372)
+.|+.+|++.+..+
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999888764
No 84
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.99 E-value=0.00011 Score=80.13 Aligned_cols=90 Identities=17% Similarity=0.086 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCch
Q 017388 213 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 292 (372)
Q Consensus 213 e~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~ 292 (372)
+-.+.|+....+.+...+.-+++|..||.++....-+-. +..|..|+.|+...-.+ .-.+.+.++|..+...|.|.
T Consensus 394 ~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChH
Confidence 345666666666655557778999999999876665555 99999999999887544 33688999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 017388 293 EAIPYCQKAISVCK 306 (372)
Q Consensus 293 eAi~~~ekAl~i~~ 306 (372)
.|..+|.+|+..+.
T Consensus 470 ~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 470 KALEHFKSALGKLL 483 (1018)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999999854
No 85
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00037 Score=70.10 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=46.7
Q ss_pred ccccccccceeeeeeecccccccccccCCCCCCCCccCCchhhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 017388 19 ETVGTTQASVEATMESVTVSGTESTCNNNCETSGAIADGEREKTVEFADELMEKGTNALKESDYGEAAECFSRALEIR 96 (372)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~ 96 (372)
.+.-|+-+-+.-+|+... |.-.+.++..- .-++.+..|...-..|+.+++.|+|..|...|.+|+..+
T Consensus 171 ~p~IPPnA~l~yEVeL~~-------f~~~~~~s~~~---~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l 238 (397)
T KOG0543|consen 171 PPLIPPNATLLYEVELLD-------FELKEDESWKM---FAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFL 238 (397)
T ss_pred CCCCCCCceEEEEEEEEe-------eecCccccccc---chHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHh
Confidence 344455555555555443 33223333211 122578889999999999999999999999999999885
No 86
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00027 Score=65.51 Aligned_cols=65 Identities=32% Similarity=0.393 Sum_probs=47.7
Q ss_pred ccCCchhhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 017388 54 IADGEREKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (372)
Q Consensus 54 ~~~~~~~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ 121 (372)
.+|..+++-++.+..|-..|..+|+.|+|.+|..-|++||++.-... ..+-.-+|.+-|-|++.+
T Consensus 83 ~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl 147 (271)
T KOG4234|consen 83 FSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKL 147 (271)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHh
Confidence 44555666688999999999999999999999999999999962221 123344555556666655
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.91 E-value=9.9e-05 Score=68.35 Aligned_cols=92 Identities=13% Similarity=-0.004 Sum_probs=70.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
++++.|...|+.++.++ + ..+...+++..+|.++...++|++|+..|++++.+.. +++.+..++|.+|.+|
T Consensus 47 ~~~~~A~~~~~~~~~~~---p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 47 GDYTEAIKYFEALESRY---P-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-----NHPDADYAYYLRGLSN 117 (235)
T ss_pred CCHHHHHHHHHHHHHhC---C-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-----CCCchHHHHHHHHHHH
Confidence 45555655555544332 1 1234568899999999999999999999999998653 5667778999999999
Q ss_pred HhC--------CCchHHHHHHHHHHHHHH
Q 017388 286 EIG--------SKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 286 ~~~--------~~~~eAi~~~ekAl~i~~ 306 (372)
... +++++|+.+|++++....
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 876 788999999999886543
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.90 E-value=0.00019 Score=77.95 Aligned_cols=133 Identities=10% Similarity=0.004 Sum_probs=104.0
Q ss_pred HHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 67 DELMEKG-TNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 67 ~~L~~~G-~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
.+++.+. ...-..+....+...+-+++.+.. .| |..+++|+++|.++...++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~La~i~~~~g~---------------------- 101 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVR-RY----PHTELFQVLVARALEAAHR---------------------- 101 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHH-hc----cccHHHHHHHHHHHHHcCC----------------------
Confidence 4444444 344456777778888888887643 33 6678999999999987743
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
++.|..+|+.+..+
T Consensus 102 --------------------------------------------------------------~~ea~~~l~~~~~~---- 115 (694)
T PRK15179 102 --------------------------------------------------------------SDEGLAVWRGIHQR---- 115 (694)
T ss_pred --------------------------------------------------------------cHHHHHHHHHHHhh----
Confidence 33444455555543
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
.|+.+.++.+++.+....++|++|+..++++|..-. .-+..|+.+|.++...|+|++|+.+|++++.
T Consensus 116 ---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p--------~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 116 ---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS--------SSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred ---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 477899999999999999999999999999998753 3479999999999999999999999999995
No 89
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.88 E-value=0.0002 Score=78.64 Aligned_cols=128 Identities=10% Similarity=0.031 Sum_probs=103.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCcccccc
Q 017388 72 KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKN 151 (372)
Q Consensus 72 ~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d~~~~~ 151 (372)
.-.++...|++++|+..|.+++.+ .|..+.++..+|.++...
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~------------------------------ 62 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNL------------------------------ 62 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHc------------------------------
Confidence 334566899999999999998875 578888899999998844
Q ss_pred ccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCCcc
Q 017388 152 AVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSME 231 (372)
Q Consensus 152 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~~~~~~ 231 (372)
++++.|...|+.++.+ .|.
T Consensus 63 ------------------------------------------------------g~~~~A~~~~~~al~~-------~P~ 81 (765)
T PRK10049 63 ------------------------------------------------------KQWQNSLTLWQKALSL-------EPQ 81 (765)
T ss_pred ------------------------------------------------------CCHHHHHHHHHHHHHh-------CCC
Confidence 2566666666665543 244
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
-..++..||.+++..|++++|+..+++++.... ++ +. ++.||.+|...+++.+|+..|++++.+...
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-----~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-----DK---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 577888999999999999999999999998843 22 35 999999999999999999999999986543
No 90
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.87 E-value=0.0001 Score=57.86 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCccccccccCCCCC
Q 017388 79 ESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESS 158 (372)
Q Consensus 79 ~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d~~~~~~~~~e~~ 158 (372)
+|+|+.|+.+|.++++..-. .+ ....++++|.+|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~------------------------------------- 38 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQ------------------------------------- 38 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHT-------------------------------------
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHC-------------------------------------
Confidence 68999999999999998411 12 666788899999955
Q ss_pred cccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHH
Q 017388 159 TASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA 238 (372)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~ 238 (372)
+++..|+++++. ..+ .+....++..
T Consensus 39 -----------------------------------------------~~y~~A~~~~~~-~~~-------~~~~~~~~~l 63 (84)
T PF12895_consen 39 -----------------------------------------------GKYEEAIELLQK-LKL-------DPSNPDIHYL 63 (84)
T ss_dssp -----------------------------------------------THHHHHHHHHHC-HTH-------HHCHHHHHHH
T ss_pred -----------------------------------------------CCHHHHHHHHHH-hCC-------CCCCHHHHHH
Confidence 367777777766 111 2345788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 017388 239 LAEVALEREDIETSLSDYQKA 259 (372)
Q Consensus 239 LGev~~e~~~y~~Al~~y~~A 259 (372)
+|.+++.+|+|++|+..|+++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 999999999999999999875
No 91
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.00039 Score=60.31 Aligned_cols=98 Identities=26% Similarity=0.234 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
....+.+|..++..|+|++|+..|..++... ....--..+.+.++++++..
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~------------------------ 98 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQ------------------------ 98 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHc------------------------
Confidence 4567789999999999999999999999852 11222345666777777743
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
++++.|+..|+. .
T Consensus 99 ------------------------------------------------------------~~~d~Al~~L~~-------~ 111 (145)
T PF09976_consen 99 ------------------------------------------------------------GQYDEALATLQQ-------I 111 (145)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHh-------c
Confidence 245566555533 2
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKAL 260 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL 260 (372)
....-.+.++..+|+|++..|++++|+..|++||
T Consensus 112 -~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 112 -PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 2233467789999999999999999999999986
No 92
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.80 E-value=4.3e-05 Score=57.29 Aligned_cols=52 Identities=29% Similarity=0.443 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh-hh
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA-QE 124 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~a-r~ 124 (372)
.|..+..+|..++..|+|++|+.+|.+|+++ +|..+.+|+++|.+++.++ +.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~ 54 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDY 54 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccH
Confidence 3678999999999999999999999999999 7999999999999999987 44
No 93
>PLN02789 farnesyltranstransferase
Probab=97.77 E-value=0.00039 Score=68.86 Aligned_cols=84 Identities=8% Similarity=-0.097 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHH
Q 017388 218 ARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 297 (372)
Q Consensus 218 Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~ 297 (372)
++.++.+.+...++-..++...|.+....++|++|+.+|.++|++-... ..+|+++|.++...++...=..+
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N--------~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN--------NSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc--------hhHHHHHHHHHHhcccccccccc
Confidence 4455555555556677888888888888888888888888888774332 47888888887766332111123
Q ss_pred HHHHHHHHHHHH
Q 017388 298 CQKAISVCKSRV 309 (372)
Q Consensus 298 ~ekAl~i~~~rl 309 (372)
++..+......|
T Consensus 199 ~e~el~y~~~aI 210 (320)
T PLN02789 199 RDSELKYTIDAI 210 (320)
T ss_pred HHHHHHHHHHHH
Confidence 455555554433
No 94
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=97.77 E-value=0.00025 Score=79.67 Aligned_cols=172 Identities=18% Similarity=0.076 Sum_probs=139.6
Q ss_pred hhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCC
Q 017388 60 EKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDS 139 (372)
Q Consensus 60 ~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~ 139 (372)
+...+.+..|..+++.+...|++++|+..-.+||-|.....|-.||++...|-++. |++.+..
T Consensus 967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla--l~~f~~~--------------- 1029 (1236)
T KOG1839|consen 967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA--LYEFAVK--------------- 1029 (1236)
T ss_pred hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH--HHHHhcc---------------
Confidence 33445677788899999999999999999999999999999999999999988887 3333210
Q ss_pred CCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHH
Q 017388 140 QQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVAR 219 (372)
Q Consensus 140 ~~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar 219 (372)
....|...+..|+
T Consensus 1030 -------------------------------------------------------------------~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 1030 -------------------------------------------------------------------NLSGALKSLNRAL 1042 (1236)
T ss_pred -------------------------------------------------------------------CccchhhhHHHHH
Confidence 0111223344444
Q ss_pred HHHHHhcC-CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHH
Q 017388 220 AIAEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 298 (372)
Q Consensus 220 ~I~ek~~~-~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ 298 (372)
.+..=..+ .+|..+.+..+++.+.+..++|+.|+.+.+.|+++.+.++++.+-..+.+|..++..+..++.|..|+.+.
T Consensus 1043 ~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1043 KLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 33322222 47889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017388 299 QKAISVCKSRVQRLLNE 315 (372)
Q Consensus 299 ekAl~i~~~rl~~l~~~ 315 (372)
+....|++..++.-..+
T Consensus 1123 k~t~~iy~~qlg~~hsr 1139 (1236)
T KOG1839|consen 1123 KVTYGIYKEQLGPDHSR 1139 (1236)
T ss_pred hhHHHHHHHhhCCCccc
Confidence 99999998877655433
No 95
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.74 E-value=0.00035 Score=67.39 Aligned_cols=104 Identities=14% Similarity=0.050 Sum_probs=78.0
Q ss_pred HHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCc
Q 017388 68 ELMEKGTNA-LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (372)
Q Consensus 68 ~L~~~G~~~-~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d 146 (372)
..+..+..+ +..|+|++|+..|...+... +.++....++||+|.+++..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~------------------------- 193 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNK------------------------- 193 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHc-------------------------
Confidence 445566554 56799999999999998873 22344578999999999955
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 017388 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 226 (372)
Q Consensus 147 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~ 226 (372)
+++..|...|......| +
T Consensus 194 -----------------------------------------------------------g~~~~A~~~f~~vv~~y---P 211 (263)
T PRK10803 194 -----------------------------------------------------------GKKDDAAYYFASVVKNY---P 211 (263)
T ss_pred -----------------------------------------------------------CCHHHHHHHHHHHHHHC---C
Confidence 24555655554444333 2
Q ss_pred CCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 227 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 227 ~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
.++...+++..||.++...|++++|+..|++.+...+
T Consensus 212 -~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 212 -KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred -CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 2467899999999999999999999999998887654
No 96
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.74 E-value=9e-05 Score=56.09 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=53.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 017388 239 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 239 LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
|..+++..++|+.|+..+++++.+.+. -...|+.+|.+|...|+|.+|+..|++++.+..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD--------DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc--------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 567899999999999999999999443 458999999999999999999999999997654
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0019 Score=66.98 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhh
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~ 124 (372)
...|.....+|+.++..++|..|+.+|..++++- .....+.+.+-++++++.+
T Consensus 221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~ 273 (539)
T KOG0548|consen 221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKY 273 (539)
T ss_pred HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHH
Confidence 4578999999999999999999999999999993 4445556666666666443
No 98
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.68 E-value=0.0011 Score=72.21 Aligned_cols=135 Identities=15% Similarity=0.163 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~ 144 (372)
.+..|++++...++.|++++|..++.++... .|....+|+.+|.++-.+|..
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~-------------------- 189 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDI-------------------- 189 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccH--------------------
Confidence 3889999999999999999999999999988 799999999999998866422
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 017388 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (372)
Q Consensus 145 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek 224 (372)
+.|... ... -.
T Consensus 190 ----------------------------------------------------------------eK~l~~---~ll--AA 200 (895)
T KOG2076|consen 190 ----------------------------------------------------------------EKALNF---WLL--AA 200 (895)
T ss_pred ----------------------------------------------------------------HHHHHH---HHH--HH
Confidence 222111 111 11
Q ss_pred hcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 225 ~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
++.++ .. +-|..+++.+.++|++.+|+-+|.+||....... ..+++.+..|...|++..|+..|.+.+..
T Consensus 201 HL~p~-d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 201 HLNPK-DY-ELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred hcCCC-Ch-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 23221 12 6788888888888888888888888887765432 56777788888888888888888887776
Q ss_pred HH
Q 017388 305 CK 306 (372)
Q Consensus 305 ~~ 306 (372)
+.
T Consensus 271 ~p 272 (895)
T KOG2076|consen 271 DP 272 (895)
T ss_pred CC
Confidence 65
No 99
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.00019 Score=73.10 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALL 119 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl 119 (372)
.+..|.++|...+..|||++|++.|.+||.- ...|..++|+.|...-
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e 535 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAE 535 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHH
Confidence 4678899999999999999999999999975 6789999999985544
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.00034 Score=66.71 Aligned_cols=123 Identities=21% Similarity=0.231 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCcc
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d~ 147 (372)
-|..+|+.++..|+|..|+..|++|+.+ .|..+.+|..+|-+|-..|
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~G------------------------- 148 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLG------------------------- 148 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHcc-------------------------
Confidence 3445999999999999999999999998 6999999999999998663
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC
Q 017388 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG 227 (372)
Q Consensus 148 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~~ 227 (372)
+++.|.--|-.|+.++
T Consensus 149 -----------------------------------------------------------r~~~Ar~ay~qAl~L~----- 164 (257)
T COG5010 149 -----------------------------------------------------------RFDEARRAYRQALELA----- 164 (257)
T ss_pred -----------------------------------------------------------ChhHHHHHHHHHHHhc-----
Confidence 3333333344444443
Q ss_pred CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHH
Q 017388 228 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 297 (372)
Q Consensus 228 ~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~ 297 (372)
+.-..+++|||-.++-+|++..|...+..+.. .++.+. .+-.||+++....|++..|-..
T Consensus 165 --~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l-----~~~ad~---~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 165 --PNEPSIANNLGMSLLLRGDLEDAETLLLPAYL-----SPAADS---RVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred --cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh-----CCCCch---HHHHHHHHHHhhcCChHHHHhh
Confidence 34467899999999999999999998876643 233232 4557999999999999888543
No 101
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.67 E-value=0.0032 Score=59.94 Aligned_cols=185 Identities=11% Similarity=0.012 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCccc------CCCCccCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV------SVPKKEGD 138 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg------~~~~~~~e 138 (372)
.+..+...|..++..|+|++|+..|.+.+... +..+....+.+++|.+++..+.+..++-- ..|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~--- 102 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--- 102 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC---
Confidence 35668889999999999999999999998852 23356667788999999988887665322 22321
Q ss_pred CCCCCCCcccc--ccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHH
Q 017388 139 SQQGSDKDDSV--KNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLD 216 (372)
Q Consensus 139 ~~~~~~~d~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le 216 (372)
++.+... .+-.+-.-. .+. -....+- ...+.|......|+..|+
T Consensus 103 ----~~~~~a~Y~~g~~~~~~~-----~~~---~~~~~~~----------------------~~~~rD~~~~~~A~~~~~ 148 (243)
T PRK10866 103 ----PNIDYVLYMRGLTNMALD-----DSA---LQGFFGV----------------------DRSDRDPQHARAAFRDFS 148 (243)
T ss_pred ----CchHHHHHHHHHhhhhcc-----hhh---hhhccCC----------------------CccccCHHHHHHHHHHHH
Confidence 0001000 000000000 000 0000000 000011222333433333
Q ss_pred HHHHHHHHhcCC-------------CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017388 217 VARAIAEKHWGD-------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (372)
Q Consensus 217 ~Ar~I~ek~~~~-------------~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~ 283 (372)
.+..+.++. ...+|.--+.+|.-|...|+|.-|+.-|+..++-. |+.+..-++++.|..
T Consensus 149 ---~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ 220 (243)
T PRK10866 149 ---KLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMEN 220 (243)
T ss_pred ---HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHH
Confidence 333333332 12356666778888999999999999999888754 467788999999999
Q ss_pred HHHhCCCchHHHHHHH
Q 017388 284 CLEIGSKPQEAIPYCQ 299 (372)
Q Consensus 284 a~~~~~~~~eAi~~~e 299 (372)
+|...|..++|....+
T Consensus 221 ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 221 AYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHcCChHHHHHHHH
Confidence 9999999999876543
No 102
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.67 E-value=0.0009 Score=63.93 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
|+...|...|+.|+.+ .|.-.+++..|+.++++.|+++++...+....... +.++ ..+..+|.+|
T Consensus 160 G~~~~A~~~~~~al~~-------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~---~~~~~la~~~ 224 (280)
T PF13429_consen 160 GDPDKALRDYRKALEL-------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDP---DLWDALAAAY 224 (280)
T ss_dssp CHHHHHHHHHHHHHHH--------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSC---CHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHH---HHHHHHHHHh
Confidence 4555565555555543 35567788899999999999999776666655554 2333 3567889999
Q ss_pred HhCCCchHHHHHHHHHHHHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKAISVCKSRVQRL 312 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i~~~rl~~l 312 (372)
...|++++|+.+|++++........-+
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999998766444333
No 103
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.67 E-value=0.00057 Score=69.26 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=59.7
Q ss_pred CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 229 ~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
+|+-+..+..+|.+++..++|++|..+|++++.+.+. ...|..|+.++...|+.++|..+|++++.++
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~---------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD---------AYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3556889999999999999999999999999998532 2456789999999999999999999998865
No 104
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.66 E-value=0.0042 Score=57.13 Aligned_cols=148 Identities=17% Similarity=0.109 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~ 144 (372)
.+..|...|..++..|+|.+|+..|.+..... +.+|-...+.|++|.+++..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~----------------------- 55 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQ----------------------- 55 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHT-----------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHc-----------------------
Confidence 36789999999999999999999999988763 55788889999999999955
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 017388 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (372)
Q Consensus 145 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek 224 (372)
+++..|...++.-+..|
T Consensus 56 -------------------------------------------------------------~~y~~A~~~~~~fi~~y-- 72 (203)
T PF13525_consen 56 -------------------------------------------------------------GDYEEAIAAYERFIKLY-- 72 (203)
T ss_dssp -------------------------------------------------------------T-HHHHHHHHHHHHHH---
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHHC--
Confidence 25666655555433332
Q ss_pred hcCCCccHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHHhcCC---------CChhHHHHHHHHHHH
Q 017388 225 HWGDSMEKVDILSALAEVALER-----------EDIETSLSDYQKALTILERMVEP---------DSRHIAELNFRICLC 284 (372)
Q Consensus 225 ~~~~~~~~A~~~~~LGev~~e~-----------~~y~~Al~~y~~AL~I~~~l~~~---------~~r~iAe~~~~Lg~a 284 (372)
+. ++.+..++..+|.++... ....+|+..|+..+.-.+..--. =...+|.--+.+|.-
T Consensus 73 -P~-~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 73 -PN-SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp -TT--TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CC-CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 355677777777775544 33456666666665443221000 012466677788999
Q ss_pred HHhCCCchHHHHHHHHHHHHH
Q 017388 285 LEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 285 ~~~~~~~~eAi~~~ekAl~i~ 305 (372)
|...++|..|+..|+..|.-+
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHcccHHHHHHHHHHHHHHC
Confidence 999999999999999887654
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00032 Score=68.41 Aligned_cols=155 Identities=15% Similarity=0.130 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcC--cccCCCCccCCCCCCCC
Q 017388 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGSD 144 (372)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~--vLg~~~~~~~e~~~~~~ 144 (372)
.-|.-+|.+|+...+|..|++||++.+.+ ||+.+...++|+.+|+.-++.... |+.....
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D---------- 106 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLD---------- 106 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC----------
Confidence 36778999999999999999999998887 899999999999999987765332 1110000
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHH----HHHHHH
Q 017388 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKM----LDVARA 220 (372)
Q Consensus 145 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~----Le~Ar~ 220 (372)
.+ ... +..=.++.|+.. |--+|.
T Consensus 107 ~~-~L~----------------------------------------------------~~~lqLqaAIkYse~Dl~g~rs 133 (459)
T KOG4340|consen 107 NP-ALH----------------------------------------------------SRVLQLQAAIKYSEGDLPGSRS 133 (459)
T ss_pred CH-HHH----------------------------------------------------HHHHHHHHHHhcccccCcchHH
Confidence 00 000 000011111111 122344
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 017388 221 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (372)
Q Consensus 221 I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ek 300 (372)
+.+..++ ...|++..++|.+...-|+|+.|+.-|+.||..- --.| -.-|++++|+...++|..|+.+...
T Consensus 134 LveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs-----Gyqp---llAYniALaHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 134 LVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS-----GYQP---LLAYNLALAHYSSRQYASALKHISE 203 (459)
T ss_pred HHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhc-----CCCc---hhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4444432 3579999999999999999999999999999763 1233 3348999999999999999988765
Q ss_pred HH
Q 017388 301 AI 302 (372)
Q Consensus 301 Al 302 (372)
-|
T Consensus 204 Ii 205 (459)
T KOG4340|consen 204 II 205 (459)
T ss_pred HH
Confidence 44
No 106
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.63 E-value=0.00068 Score=63.47 Aligned_cols=100 Identities=21% Similarity=0.097 Sum_probs=88.3
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-----hHHHHHH
Q 017388 205 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-----HIAELNF 279 (372)
Q Consensus 205 ~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r-----~iAe~~~ 279 (372)
.-+++.|++.+-+|+.+++-....+..+|.++..||.+|.+.++-++....+++||....+.+..++. .-+...|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 45899999999999999987766667899999999999999999999999999999999987754432 4467899
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 280 RICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 280 ~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
-||..+.+.|++++|+..|.+.+..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999888765
No 107
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0027 Score=66.65 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-------HIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 231 ~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r-------~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
..-+-++|.+.++++.|+|.+|++.+++|++|.++.|..+++ .|+.++.+|+.+|..+|+..+|...|...|.
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 356788999999999999999999999999999988776543 4899999999999999999999888876554
No 108
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00024 Score=70.04 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHH
Q 017388 216 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 295 (372)
Q Consensus 216 e~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi 295 (372)
|+|+..|.+.+.--..-.+.+.|||-..+-.++||-++..|++||....+ .-.-|++|||||.+.--.|++.-|.
T Consensus 341 E~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAK 415 (478)
T ss_pred HHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHH
Confidence 44444444443322233567888888888889999999999988887652 2345788999999888889999998
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017388 296 PYCQKAISVCKSRVQRLLN 314 (372)
Q Consensus 296 ~~~ekAl~i~~~rl~~l~~ 314 (372)
.+|+-||..-..+-+.|.|
T Consensus 416 rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 416 RCFRLALTSDAQHGEALNN 434 (478)
T ss_pred HHHHHHhccCcchHHHHHh
Confidence 8888888766555555543
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.56 E-value=0.0014 Score=72.57 Aligned_cols=150 Identities=19% Similarity=0.125 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
...+..+...+...+++++|+.+..++++. +|.-..+||.+|..++...+.....+-+...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~----------- 91 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLLNLID----------- 91 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhhhhhh-----------
Confidence 556777888899999999999999988887 7999999999999666665443332211000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
... ...+.... +. +|.+.
T Consensus 92 --------------------------~~~-----------------------------~~~~~~~v-e~------~~~~i 109 (906)
T PRK14720 92 --------------------------SFS-----------------------------QNLKWAIV-EH------ICDKI 109 (906)
T ss_pred --------------------------hcc-----------------------------cccchhHH-HH------HHHHH
Confidence 000 00122221 11 11111
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
+. ...--.+|+.||.+|-.+|++++|...|+++|.+. |.-+.++.++|..|... ++++|+.++.+|+..+
T Consensus 110 ~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 110 LL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred Hh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 11 12223489999999999999999999999999997 33468999999999999 9999999999999886
Q ss_pred H
Q 017388 306 K 306 (372)
Q Consensus 306 ~ 306 (372)
-
T Consensus 180 i 180 (906)
T PRK14720 180 I 180 (906)
T ss_pred H
Confidence 4
No 110
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00044 Score=68.21 Aligned_cols=84 Identities=17% Similarity=0.094 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCC---CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCc
Q 017388 215 LDVARAIAEKHWGD---SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 291 (372)
Q Consensus 215 Le~Ar~I~ek~~~~---~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~ 291 (372)
+++++..|++.+.. .-..|++|.|||-|....|+|.-|-.+|+-||.- ++.-++++.|||+.-.+.|+.
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCch
Confidence 45556666665431 3457899999999999999999999888877753 445589999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 017388 292 QEAIPYCQKAISVCK 306 (372)
Q Consensus 292 ~eAi~~~ekAl~i~~ 306 (372)
+.|..+++.|..+..
T Consensus 446 ~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHHHHHhhhhCc
Confidence 999999988876643
No 111
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.001 Score=63.86 Aligned_cols=105 Identities=20% Similarity=0.199 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
+..+.+.+..++..|||..|...|+.-+.- .+..+-.+.++||||.++|.++
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg----------------------- 192 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQG----------------------- 192 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcc-----------------------
Confidence 344999999999999999999999987765 4667889999999999999763
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
++..|-.+|-.+.. ..
T Consensus 193 -------------------------------------------------------------~y~~Aa~~f~~~~k---~~ 208 (262)
T COG1729 193 -------------------------------------------------------------DYEDAAYIFARVVK---DY 208 (262)
T ss_pred -------------------------------------------------------------cchHHHHHHHHHHH---hC
Confidence 23333332322222 22
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 263 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~ 263 (372)
..+++..+.++.||.+..++++-+.|...|++.++=+
T Consensus 209 -P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 209 -PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred -CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 2346778999999999999999999999999877644
No 112
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0024 Score=64.75 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA 294 (372)
-+.|+.+|++.+...|....+-..++++.+.-|+|.++|..+++.|.++... ..|..||.++.....+.+|
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~---------~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV---------NLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc---------HHHHHHHHHHHHhhhHHHH
Confidence 4788999999888788899999999999999999999999999999998653 6788999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 017388 295 IPYCQKAISVCKS 307 (372)
Q Consensus 295 i~~~ekAl~i~~~ 307 (372)
+.||+.||.+-..
T Consensus 491 m~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 491 MEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhcCcc
Confidence 9999999987543
No 113
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.54 E-value=0.0012 Score=73.15 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh--CCCchH
Q 017388 216 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI--GSKPQE 293 (372)
Q Consensus 216 e~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~--~~~~~e 293 (372)
+.|+.+|++.+...|.-..++..|+.++.+.+++++|+..+.+++.+.... ..+ ++++|.. .+++.+
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~---------~~~--l~layL~~~~~~~~~ 187 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV---------QNY--MTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch---------HHH--HHHHHHHHhcchHHH
Confidence 344444444444445558888899999999999999999999988775431 112 4444444 666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 017388 294 AIPYCQKAISVCKSRVQRLLNEVKS 318 (372)
Q Consensus 294 Ai~~~ekAl~i~~~rl~~l~~~~~~ 318 (372)
|+..|+++++.......-+.+.+..
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~~~ 212 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHLEI 212 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999876554444443333
No 114
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.53 E-value=0.0076 Score=55.46 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
...++.+|..++..|+|..|+..|.+-+... +.||....++|+.|.+++...+.-. ..
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~~~~~~~A~Y~~g~~~~~~~~~~~-------~~---------- 99 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PNSPKADYALYMLGLSYYKQIPGIL-------RS---------- 99 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TTHHHHHHHHHHHHHHHHHHHH--------T----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHhCccch-------hc----------
Confidence 3456889999999999999999999988764 4588999999999999998743210 00
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
+.|......|...++.-+ .+.
T Consensus 100 --------------------------------------------------------~~D~~~~~~A~~~~~~li---~~y 120 (203)
T PF13525_consen 100 --------------------------------------------------------DRDQTSTRKAIEEFEELI---KRY 120 (203)
T ss_dssp --------------------------------------------------------T---HHHHHHHHHHHHHH---HH-
T ss_pred --------------------------------------------------------ccChHHHHHHHHHHHHHH---HHC
Confidence 001123444433333222 222
Q ss_pred cCC-------------CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCch
Q 017388 226 WGD-------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 292 (372)
Q Consensus 226 ~~~-------------~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~ 292 (372)
++. ...+|.--+.+|..|+.+|+|..|+.-|+..|+-. |+++...++++.|..+|..+|...
T Consensus 121 P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 121 PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChH
Confidence 222 12356667788999999999999999999988765 367788899999999999999977
Q ss_pred HH
Q 017388 293 EA 294 (372)
Q Consensus 293 eA 294 (372)
.|
T Consensus 196 ~a 197 (203)
T PF13525_consen 196 AA 197 (203)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 115
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.53 E-value=0.0013 Score=70.68 Aligned_cols=130 Identities=22% Similarity=0.157 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCcc
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d~ 147 (372)
-.+..|..++..+.-++|..|+.+|-.+. |.++..||.-|..+..++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~G~~~~~~~------------------------- 698 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLRGLLLEVKG------------------------- 698 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHhhHHHHHHH-------------------------
Confidence 34456788888999999999999999984 999999999999998663
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC
Q 017388 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG 227 (372)
Q Consensus 148 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~~ 227 (372)
.+..|.+.|..| +.
T Consensus 699 -----------------------------------------------------------~~~EA~~af~~A-------l~ 712 (799)
T KOG4162|consen 699 -----------------------------------------------------------QLEEAKEAFLVA-------LA 712 (799)
T ss_pred -----------------------------------------------------------hhHHHHHHHHHH-------Hh
Confidence 222333333333 34
Q ss_pred CCccHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 228 DSMEKVDILSALAEVALEREDIETSLS--DYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 228 ~~~~~A~~~~~LGev~~e~~~y~~Al~--~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
-.|....+...||+++++.|+-.-|.. .+..+|++... .-++||+||.++...|+.+.|..+|+.|+.+
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~--------n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL--------NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 457788899999999999998887877 99999988543 3499999999999999999999999999876
No 116
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00011 Score=54.65 Aligned_cols=50 Identities=24% Similarity=0.394 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcC
Q 017388 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD 127 (372)
Q Consensus 70 ~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~ 127 (372)
+.+|..++..|+|++|+.+|++++.. +|....+++++|.+++.+++.+.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A 50 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEA 50 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999999999999998 699999999999999999887543
No 117
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.52 E-value=0.00048 Score=58.78 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
.+++.+|.++-..|+.++|+..|+++|.. |........++.+||.+|...|++++|+..+++++.-
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788888888899999999999998873 3344455678888999999999999998888888754
No 118
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00011 Score=54.71 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=47.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 244 LEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 244 ~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
+..|+|++|+..|++++...+. -..+++.||.||...|++++|...+++.+.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 6789999999999999988543 3589999999999999999999999988876554
No 119
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.49 E-value=0.00019 Score=46.60 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
|.+|+++|.+|..++++++|+.+|++||.+.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 6789999999999999999999999999874
No 120
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.46 E-value=0.00065 Score=67.39 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~a 122 (372)
-|..+-+|-.+|..||++|+|++|++||+++..+ .|-++-+|.+-+.|||.+-
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K 145 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQK 145 (536)
T ss_pred HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHH
Confidence 3667778899999999999999999999999987 5777788888888888763
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.45 E-value=0.0017 Score=62.03 Aligned_cols=84 Identities=11% Similarity=0.052 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA 294 (372)
+..|...|.+.....+.=..+|+.||-++...|+|+.|...|.++|++...- ..++.|||..|...|++..|
T Consensus 116 ~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~--------p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 116 FGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE--------PSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred hHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC--------chhhhhHHHHHHHcCCHHHH
Confidence 3444444455444456678999999999999999999999999999997533 37789999999999999999
Q ss_pred HHHHHHHHHHHH
Q 017388 295 IPYCQKAISVCK 306 (372)
Q Consensus 295 i~~~ekAl~i~~ 306 (372)
..++..+...-.
T Consensus 188 ~~lll~a~l~~~ 199 (257)
T COG5010 188 ETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHHhCCC
Confidence 999999875544
No 122
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.0011 Score=63.65 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=79.4
Q ss_pred hHHHHHHHH-----HHHHHHHHHhcC---CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017388 207 DLDLAWKML-----DVARAIAEKHWG---DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 278 (372)
Q Consensus 207 dl~~Awe~L-----e~Ar~I~ek~~~---~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~ 278 (372)
.|+.|+..+ ..|..-|.+... .....+++|+.||+.+..+|+|+.|...|..+.+= -|+|+...+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCCChHHH
Confidence 788888874 667777766654 24678999999999999999999999999998873 25788889999
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 279 FRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 279 ~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
++||.|+..+++.++|-..|++.+.-+
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 999999999999999998888877543
No 123
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.44 E-value=0.0015 Score=66.27 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 233 VDILSALAEVALEREDIETSLSDYQK--ALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~--AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
+..+..||.+++..|+|++|..+|++ ++.+.. ++ ..+..||.++...|+.++|..+|++++...
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-----~~----~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-----DA----NDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-----CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 37889999999999999999999995 554432 11 335579999999999999999999988764
No 124
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.42 E-value=0.0014 Score=57.03 Aligned_cols=90 Identities=21% Similarity=0.207 Sum_probs=76.1
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017388 204 DESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (372)
Q Consensus 204 d~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~ 283 (372)
+.++++-|++.|..|+.+. |+.+.+|++-+..+.-+++-+.|+.++.+||.+. |+..|.--.+|.+.|+
T Consensus 55 E~g~Ld~AlE~F~qal~l~-------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLA-------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTACQAFVQRGL 123 (175)
T ss_pred hccchHHHHHHHHHHHHhc-------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHHHHHHHHHH
Confidence 3456777777666666553 5678999999999999999999999999999875 5567777789999999
Q ss_pred HHHhCCCchHHHHHHHHHHHH
Q 017388 284 CLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 284 a~~~~~~~~eAi~~~ekAl~i 304 (372)
.|+..|+.+.|..-|+.|-.+
T Consensus 124 lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHh
Confidence 999999999999999998764
No 125
>PRK11906 transcriptional regulator; Provisional
Probab=97.40 E-value=0.0029 Score=65.11 Aligned_cols=148 Identities=18% Similarity=0.108 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCC
Q 017388 68 ELMEKGTNALKES---DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (372)
Q Consensus 68 ~L~~~G~~~~~~g---dy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~ 144 (372)
.+.-+|..++..+ ....|..+|.+|+.+. +..|+.|.+|-.+..+++..... |...
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~-----g~~~----------- 315 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALH-----GKSE----------- 315 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHh-----cCCC-----------
Confidence 6677888777665 4567888899998321 23799999999999999876422 2100
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 017388 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (372)
Q Consensus 145 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek 224 (372)
...+...|....+.|..+
T Consensus 316 -----------------------------------------------------------~~~~~~~a~~~A~rAvel--- 333 (458)
T PRK11906 316 -----------------------------------------------------------LELAAQKALELLDYVSDI--- 333 (458)
T ss_pred -----------------------------------------------------------chHHHHHHHHHHHHHHhc---
Confidence 012455554444444432
Q ss_pred hcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 225 ~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
.+.=+.++..+|-++.-.++|+.|+..|++|+.+- |..|.+||-+|.++.+.|+.++|+.++++|+.+
T Consensus 334 ----d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 334 ----TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred ----CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 34458999999999999999999999999999884 567999999999999999999999999998876
Q ss_pred HHHHHH
Q 017388 305 CKSRVQ 310 (372)
Q Consensus 305 ~~~rl~ 310 (372)
=..|++
T Consensus 402 sP~~~~ 407 (458)
T PRK11906 402 EPRRRK 407 (458)
T ss_pred CchhhH
Confidence 554443
No 126
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00084 Score=63.64 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCC
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~ 143 (372)
..|..|-..|++++.-++|..|++||++|+-+ .|-.+..|-+=..+++.+-
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~--------------------- 58 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLK--------------------- 58 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhh---------------------
Confidence 45777888999999999999999999999998 6888888887777777541
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 017388 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (372)
Q Consensus 144 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~e 223 (372)
++..+- .-+.
T Consensus 59 ---------------------------------------------------------------~~~~v~-------~dcr 68 (284)
T KOG4642|consen 59 ---------------------------------------------------------------HWEPVE-------EDCR 68 (284)
T ss_pred ---------------------------------------------------------------hhhhhh-------hhHH
Confidence 111111 1122
Q ss_pred HhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 017388 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP 269 (372)
Q Consensus 224 k~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~ 269 (372)
+.+...++++..|+.||...+....|+.||..+++|+.+.+....+
T Consensus 69 ralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 69 RALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred HHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence 2233346789999999999999999999999999999998876544
No 127
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00066 Score=69.43 Aligned_cols=104 Identities=19% Similarity=0.278 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--------------------------
Q 017388 214 MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMV-------------------------- 267 (372)
Q Consensus 214 ~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~-------------------------- 267 (372)
-.|.|..-|++.+...+....+|..+|-=|+++.|-..|++.|++|++|.+.-+
T Consensus 345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence 347888888888887889999999999999999999999999999999876421
Q ss_pred ---CCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH------HHHHHHHHHHhhc
Q 017388 268 ---EPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS------RVQRLLNEVKSLG 320 (372)
Q Consensus 268 ---~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~------rl~~l~~~~~~~~ 320 (372)
-|+++ ..|--||.||...++.++|+.+|.+|+..-.. ||+.|.++++...
T Consensus 425 ~~~kPnDs---Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 425 LELKPNDS---RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HhcCCCch---HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 12222 33455777778888888888888888875444 8888887776654
No 128
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.37 E-value=0.00025 Score=46.03 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
|.+|.++|.++..+++|++|+.+|++||+|.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 67899999999999999999999999999865
No 129
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.36 E-value=0.00042 Score=46.20 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 017388 235 ILSALAEVALEREDIETSLSDYQKALTILERM 266 (372)
Q Consensus 235 ~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l 266 (372)
+|.+||.++...|+|++|+..|+++|.+....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 58899999999999999999999999988754
No 130
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.35 E-value=0.0024 Score=58.20 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhh
Q 017388 89 FSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (372)
Q Consensus 89 ~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~ 124 (372)
|..|++.....|-. .|.-++.+++.|.||+++++.
T Consensus 7 FE~ark~aea~y~~-nP~DadnL~~WG~ALLELAqf 41 (186)
T PF06552_consen 7 FEHARKKAEAAYAK-NPLDADNLTNWGGALLELAQF 41 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CcHhHHHHHHHHHHHHHHHhc
Confidence 34444444333321 588899999999999999865
No 131
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.35 E-value=0.0014 Score=66.97 Aligned_cols=88 Identities=23% Similarity=0.215 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
+||+.|.+++..| +.+...-..+++++|..+-.+|+.++|+.+|-+.-.|+.. -++.+++|+.+|
T Consensus 504 gd~dka~~~ykea-------l~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n--------n~evl~qianiy 568 (840)
T KOG2003|consen 504 GDLDKAAEFYKEA-------LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN--------NAEVLVQIANIY 568 (840)
T ss_pred CcHHHHHHHHHHH-------HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHH
Confidence 4666666555444 4455556788999999999999999999999998888764 479999999999
Q ss_pred HhCCCchHHHHHHHHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKAISVCKSR 308 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i~~~r 308 (372)
..+.+...||+.|-++..++...
T Consensus 569 e~led~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPND 591 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCC
Confidence 99999999999999999877543
No 132
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0057 Score=59.56 Aligned_cols=111 Identities=21% Similarity=0.191 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~ 145 (372)
+..+.-+|..++.+|+|..|+..|.+|..| .|+..+.+..||.+|++.+ |.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a-------~~-------------- 206 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQA-------GQ-------------- 206 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc-------CC--------------
Confidence 556778999999999999999999999999 6999999999999999773 00
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 225 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~ 225 (372)
.+- ..++.+|.+.
T Consensus 207 ------------------------------------------------------------~~t-------a~a~~ll~~a 219 (287)
T COG4235 207 ------------------------------------------------------------QMT-------AKARALLRQA 219 (287)
T ss_pred ------------------------------------------------------------ccc-------HHHHHHHHHH
Confidence 011 2334455555
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017388 226 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAE 276 (372)
Q Consensus 226 ~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe 276 (372)
+..++.-..+.+.||-.+++.|+|.+|+..++.-|+. +|++.+....
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr~~ 266 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRRSL 266 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchHHH
Confidence 4545667899999999999999999999999887765 4555544333
No 133
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.27 E-value=0.00051 Score=44.17 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
|.+|+.||.+|...++|++|+.+|++|+.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999874
No 134
>PLN02789 farnesyltranstransferase
Probab=97.26 E-value=0.012 Score=58.36 Aligned_cols=39 Identities=5% Similarity=-0.107 Sum_probs=34.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 017388 75 NALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (372)
Q Consensus 75 ~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ 121 (372)
.+...+++++|+.++.+++++ +|....+++.-|.+|..+
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L 84 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEAL 84 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHc
Confidence 455678999999999999998 799999999999999966
No 135
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.21 E-value=0.0081 Score=61.01 Aligned_cols=51 Identities=22% Similarity=0.182 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ 121 (372)
..++...+..|...+..|||..|...+.++... .|.-...|...|.+.+..
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~ 131 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQR 131 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHC
Confidence 446888899999999999999999999887775 355455566667776644
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.21 E-value=0.031 Score=53.15 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHHHHHHhc
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE---------------D---IETSLSDYQKALTILERMV 267 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~---------------~---y~~Al~~y~~AL~I~~~l~ 267 (372)
+++..|...++.....|- .++.+..++..+|.++...+ + -.+|+..|++-++-.+..-
T Consensus 83 ~~y~~A~~~~e~fi~~~P----~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 83 ADLPLAQAAIDRFIRLNP----THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred CCHHHHHHHHHHHHHhCc----CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 356666555555444332 24678899999998865554 1 1345555555554432110
Q ss_pred C-C--------CChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 268 E-P--------DSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 268 ~-~--------~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
- + -...+|.--+.+|.-|...++|.-|+.-|+..|.-
T Consensus 159 ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~ 204 (243)
T PRK10866 159 YTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD 204 (243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 0 0 01245555566677778888887777777766643
No 137
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0016 Score=65.79 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=69.3
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 309 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl 309 (372)
++...++-.-|+-....|+|..|-+.|..+|.|-+. +-...|.+|+++|.++.+.|+..+||.-+..|+.|=...|
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 456677788899999999999999999999999765 3346899999999999999999999999999999876666
Q ss_pred HHHHH
Q 017388 310 QRLLN 314 (372)
Q Consensus 310 ~~l~~ 314 (372)
..+..
T Consensus 322 kall~ 326 (486)
T KOG0550|consen 322 KALLR 326 (486)
T ss_pred HHHHH
Confidence 65544
No 138
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.20 E-value=0.0088 Score=60.62 Aligned_cols=77 Identities=18% Similarity=0.042 Sum_probs=58.2
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---------hcC--------------CCChhHHHHHHHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILER---------MVE--------------PDSRHIAELNFRICLCLE 286 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~---------l~~--------------~~~r~iAe~~~~Lg~a~~ 286 (372)
+....++..+|..+...|++++|...++++|+.... +.. ..||.-+..++.+|.++.
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM 339 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 345677888888888888888888888887762210 111 124555778999999999
Q ss_pred hCCCchHHHHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~i~~ 306 (372)
..+++++|..+|++++.+..
T Consensus 340 ~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999998843
No 139
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.02 Score=54.36 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALER-EDIETSLSDYQKALTILERMVEPDSRHIA-ELNFRICLC 284 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~-~~y~~Al~~y~~AL~I~~~l~~~~~r~iA-e~~~~Lg~a 284 (372)
+-+.|...|+.|..||-....- ...|.-|..||++|-.- .+|++||.+|++|-+.++. .++...| .++.+.+.-
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf-~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRF-TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQY 163 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHH-HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHH
Confidence 5567888999999999776432 24578899999999655 8999999999999988763 2222222 345555555
Q ss_pred HHhCCCchHHHHHHHHH
Q 017388 285 LEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 285 ~~~~~~~~eAi~~~ekA 301 (372)
-...++|.+||..|++.
T Consensus 164 aa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566677777766663
No 140
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.0082 Score=59.27 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHH
Q 017388 217 VARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 296 (372)
Q Consensus 217 ~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~ 296 (372)
.|+..+.|.+...++-+++-..||.|.+..|+|..|+..|+..+.--..+ +.++.-.|-.||...|+..+.+.
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-------l~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-------LSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 34444444444456778888999999999999999999999888765444 57888999999999999999999
Q ss_pred HHHHHHHHHH
Q 017388 297 YCQKAISVCK 306 (372)
Q Consensus 297 ~~ekAl~i~~ 306 (372)
...++.+.+.
T Consensus 271 fL~~~~~~~~ 280 (389)
T COG2956 271 FLRRAMETNT 280 (389)
T ss_pred HHHHHHHccC
Confidence 9998887653
No 141
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.005 Score=58.83 Aligned_cols=114 Identities=20% Similarity=0.221 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-----CC-----CChhHHHHHHHHHHHHHHhhhhhcCcccC
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-----GE-----LALECVNAYYQYGRALLYKAQEEADPLVS 131 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~-----Ge-----~~pe~A~~y~~yG~ALl~~ar~es~vLg~ 131 (372)
.+.-.-.|...|+++|+.|+|.+|..+|.+|+-.+..+- |+ ..--.-++|.+|..|+|..+
T Consensus 174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~--------- 244 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE--------- 244 (329)
T ss_pred hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH---------
Confidence 344556788899999999999999999999998876542 22 33345678888888888442
Q ss_pred CCCccCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHH
Q 017388 132 VPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLA 211 (372)
Q Consensus 132 ~~~~~~e~~~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~A 211 (372)
+|
T Consensus 245 ---------------------------------------------------------------------------e~--- 246 (329)
T KOG0545|consen 245 ---------------------------------------------------------------------------EY--- 246 (329)
T ss_pred ---------------------------------------------------------------------------HH---
Confidence 23
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 017388 212 WKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM 266 (372)
Q Consensus 212 we~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l 266 (372)
+++++.+-.|+.+.+ ....+|+.-|......=|-.+|..||.++|++...+
T Consensus 247 yevleh~seiL~~~~----~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 247 YEVLEHCSEILRHHP----GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHHhcCC----chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 355777777776664 468899999999999999999999999999986543
No 142
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.13 E-value=0.0013 Score=59.97 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017388 214 MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDI----------ETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (372)
Q Consensus 214 ~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y----------~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~ 283 (372)
+++.||..++......|.-++.+++-|.+++++.+| .+|++-|++||.|.+. ...++++||+
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~--------~hdAlw~lGn 77 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN--------KHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc--------hHHHHHHHHH
Confidence 466677766665444456689999999999988766 5567777777777543 3489999999
Q ss_pred HHHhCCC-----------chHHHHHHHHHH
Q 017388 284 CLEIGSK-----------PQEAIPYCQKAI 302 (372)
Q Consensus 284 a~~~~~~-----------~~eAi~~~ekAl 302 (372)
||...+. |++|..+|++|.
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv 107 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAV 107 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 9977664 456666666554
No 143
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.12 E-value=0.00098 Score=44.38 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 017388 277 LNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 277 ~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
+|.+||.+|...|+|++|+.+|+++|.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999997754
No 144
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.09 E-value=0.0012 Score=42.47 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
|.+|+.||.++..+|+|++|+.+|+++|.|.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 57899999999999999999999999999864
No 145
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.06 E-value=0.0011 Score=42.73 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
|.+|..||.++...|+|++|+.+|++|+++.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57899999999999999999999999999875
No 146
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.99 E-value=0.02 Score=48.90 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCC---CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCch
Q 017388 216 DVARAIAEKHWGD---SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 292 (372)
Q Consensus 216 e~Ar~I~ek~~~~---~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~ 292 (372)
+.|..+|++.+.. .....+++..||..+...|++++|+..+++++.- +| +...-.....-+++++...|+++
T Consensus 18 ~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~----~p-~~~~~~~l~~f~Al~L~~~gr~~ 92 (120)
T PF12688_consen 18 EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE----FP-DDELNAALRVFLALALYNLGRPK 92 (120)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CC-CccccHHHHHHHHHHHHHCCCHH
Confidence 4555555555432 3456789999999999999999999999998752 22 22223344455889999999999
Q ss_pred HHHHHHHHHHH
Q 017388 293 EAIPYCQKAIS 303 (372)
Q Consensus 293 eAi~~~ekAl~ 303 (372)
+|+..+-.++.
T Consensus 93 eAl~~~l~~la 103 (120)
T PF12688_consen 93 EALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999877765
No 147
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.98 E-value=0.0014 Score=42.27 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
|.+|+.||.+|...|++++|+.+|++++++-+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57899999999999999999999999999854
No 148
>PRK15331 chaperone protein SicA; Provisional
Probab=96.96 E-value=0.0029 Score=56.87 Aligned_cols=80 Identities=18% Similarity=0.084 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHH
Q 017388 216 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 295 (372)
Q Consensus 216 e~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi 295 (372)
+-|..+|.-..-..+.-.+-++.||-+++.+++|.+|+..|--|..+...- | ..+|..|.||...++...|+
T Consensus 54 ~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-----p---~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 54 DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-----Y---RPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-----C---CccchHHHHHHHhCCHHHHH
Confidence 445555544322233346678999999999999999999999999887532 2 33889999999999999999
Q ss_pred HHHHHHHH
Q 017388 296 PYCQKAIS 303 (372)
Q Consensus 296 ~~~ekAl~ 303 (372)
.+|+.++.
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99999997
No 149
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.95 E-value=0.0016 Score=66.84 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHH---HHHHHHHHHHHHhhhhhc
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECV---NAYYQYGRALLYKAQEEA 126 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A---~~y~~yG~ALl~~ar~es 126 (372)
..+..++++|..++.+|+|++|+.+|++|+++ .|..+ .+||++|++|..+++.+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dE 130 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKK 130 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 34788999999999999999999999999999 46666 459999999999987644
No 150
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.91 E-value=0.013 Score=65.16 Aligned_cols=47 Identities=6% Similarity=-0.035 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 017388 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (372)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ 121 (372)
..|+.+|.+|-.+|++++|..+|.++|++ .|..+.++++||-.|-..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE 163 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh
Confidence 37899999999999999999999999998 599999999999887744
No 151
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.88 E-value=0.019 Score=57.20 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCC
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~ 143 (372)
..+...+.+|+.+++.|.|..|+..|..|++. .|.+=.++|.-|.++|.+|+...+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~a---------------- 91 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAA---------------- 91 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccc----------------
Confidence 45678889999999999999999999999997 799999999999999977644211
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 017388 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (372)
Q Consensus 144 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~e 223 (372)
..||. |+
T Consensus 92 -------------------------------------------------------------l~Dl~---------rV--- 98 (504)
T KOG0624|consen 92 -------------------------------------------------------------LQDLS---------RV--- 98 (504)
T ss_pred -------------------------------------------------------------hhhHH---------HH---
Confidence 01222 22
Q ss_pred HhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH------------HHHHhCCCc
Q 017388 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC------------LCLEIGSKP 291 (372)
Q Consensus 224 k~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg------------~a~~~~~~~ 291 (372)
+..+|...-+..--|.|.+.+|.+++|..+|+..|.--.. .-..-+++.+|+ ..+.-.|++
T Consensus 99 --lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s-----~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 99 --LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS-----NGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred --HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC-----cchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence 2234667777788899999999999999999998864321 111122222222 334556789
Q ss_pred hHHHHHHHHHHHHH
Q 017388 292 QEAIPYCQKAISVC 305 (372)
Q Consensus 292 ~eAi~~~ekAl~i~ 305 (372)
..||++..+-|+|+
T Consensus 172 ~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ 185 (504)
T ss_pred hhHHHHHHHHHhcC
Confidence 99999999988765
No 152
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.87 E-value=0.0026 Score=44.07 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGR 116 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ 116 (372)
.++.+|..+...|++++|+.+|++++++ +|+...+++.||.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 5778999999999999999999999998 7999999999986
No 153
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.83 E-value=0.018 Score=58.69 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=56.3
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~e 299 (372)
+.-+..+...+..++..++|+.|+...++|..+.+.-+ .+|+.|+.||...|+|+.|+-..+
T Consensus 231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f--------~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEF--------ETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH--------HHHHHHHHHHHhcCCHHHHHHHHh
Confidence 44589999999999999999999999999999987766 899999999999999999996655
No 154
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.82 E-value=0.012 Score=58.94 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=80.4
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHH
Q 017388 205 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD--SRHIAELNFRIC 282 (372)
Q Consensus 205 ~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~--~r~iAe~~~~Lg 282 (372)
.+-|+.+++.|+.|..+-....+. +---+++..||..|-...+|++|+-+..+|++|-..+--.+ ...-+-++|.++
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~-~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDA-MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCc-eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 357888888888888877665443 33458899999999999999999999999999998764222 234567788999
Q ss_pred HHHHhCCCchHHHHHHHHHHHH
Q 017388 283 LCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 283 ~a~~~~~~~~eAi~~~ekAl~i 304 (372)
++|+..|+..+|.++++.|..+
T Consensus 214 ValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHH
Confidence 9999999999999999888754
No 155
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.018 Score=58.58 Aligned_cols=174 Identities=17% Similarity=0.124 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcC-cccCCCCccCCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD-PLVSVPKKEGDSQQGS 143 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~-vLg~~~~~~~e~~~~~ 143 (372)
...-|..+|+.++..|||.+|+..|++++-+ .|.+-...-.||..|...++.+.. -||...=. ..+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~--~~~~t- 299 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA--KVKYT- 299 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh--hhhcc-
Confidence 3556788999999999999999999999988 799999999999998887765432 22210000 00000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 017388 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 223 (372)
Q Consensus 144 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~e 223 (372)
..... ++... . =+.-+|..| +..-+
T Consensus 300 -a~~wf------------V~~~~-----l------------------------------~~~K~~~rA-------L~~~e 324 (564)
T KOG1174|consen 300 -ASHWF------------VHAQL-----L------------------------------YDEKKFERA-------LNFVE 324 (564)
T ss_pred -hhhhh------------hhhhh-----h------------------------------hhhhhHHHH-------HHHHH
Confidence 00000 00000 0 001234444 44444
Q ss_pred HhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 224 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 224 k~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
|.....+.....|..-|...+..++..+|+-.|+.|..+.+--+ ++|-.|--+|-..+++.+|...-+.++.
T Consensus 325 K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--------~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 325 KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL--------EIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH--------HHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 44444566788899999999999999999999999999985443 7888888888899999999888888888
Q ss_pred HHHHHHHHH
Q 017388 304 VCKSRVQRL 312 (372)
Q Consensus 304 i~~~rl~~l 312 (372)
.+......|
T Consensus 397 ~~~~sA~~L 405 (564)
T KOG1174|consen 397 LFQNSARSL 405 (564)
T ss_pred Hhhcchhhh
Confidence 777665555
No 156
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.74 E-value=0.017 Score=53.81 Aligned_cols=75 Identities=27% Similarity=0.221 Sum_probs=64.7
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
...++-+-.=|.-++..|+|+.|.+-|..||.+.+.... ..-+.+|.|.|.|+..+++++.||.-|.+||++-..
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 446777888899999999999999999999999987653 334678899999999999999999999999988663
No 157
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.73 E-value=0.032 Score=61.07 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHHH
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS--------RHIAELNFRICLCLE 286 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~--------r~iAe~~~~Lg~a~~ 286 (372)
++.|...|++.+...|.-.++...|+.++..+|++++|++- ...++.+++ ...+...+..+..|.
T Consensus 465 ~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt-------L~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET-------LEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH-------HhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 45666677777666788899999999999999999955554 444444442 345666789999999
Q ss_pred hCCCchHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~ 303 (372)
..|+.++=+..-..-+.
T Consensus 538 ~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVD 554 (895)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 99998874444333333
No 158
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.64 E-value=0.069 Score=51.61 Aligned_cols=140 Identities=26% Similarity=0.245 Sum_probs=93.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCccccccccCC
Q 017388 76 ALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNG 155 (372)
Q Consensus 76 ~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d~~~~~~~~~ 155 (372)
...+||++.|.-+|+++=.+....-......++..+|++|+.++...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~--------------------------------- 49 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKK--------------------------------- 49 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcC---------------------------------
Confidence 46899999999999999998864455667899999999999999551
Q ss_pred CCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH-hc--CCC---
Q 017388 156 ESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK-HW--GDS--- 229 (372)
Q Consensus 156 e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek-~~--~~~--- 229 (372)
+++..|...|+.|..|+.+ .. ...
T Consensus 50 --------------------------------------------------~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~ 79 (278)
T PF08631_consen 50 --------------------------------------------------DKYEEAVKWLQRAYDILEKPGKMDKLSPDG 79 (278)
T ss_pred --------------------------------------------------CChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence 1566777788888888765 21 111
Q ss_pred -ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 230 -MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 230 -~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
.....|+..|+.++++.+.++.... -.++|++.+.-+| +++.+- +.+|-.... .++.+.+...+.+.+.
T Consensus 80 ~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~--~L~l~il~~-~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 80 SELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF--LLKLEILLK-SFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH--HHHHHHHhc-cCChhHHHHHHHHHHH
Confidence 2468899999999999999964433 3444444544444 343322 233333333 4555555555555543
No 159
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.051 Score=51.73 Aligned_cols=91 Identities=15% Similarity=0.083 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCC-----
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS----- 289 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~----- 289 (372)
+-.|-.+|.+. .+.+.++|+.+--+||.++|||.-|..++..--+|++.-+ .+-.-|..||..+-=|....
T Consensus 77 YveA~~cykk~--~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl--~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 77 YVEAANCYKKV--DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDL--QDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHhhcc--ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhH--HHHHHHHHHHHHHHHHHcchhhhhh
Confidence 33455577665 3457889999999999999999999999888888887644 23344666777665444333
Q ss_pred ---------CchHHHHHHHHHHHHHHHHH
Q 017388 290 ---------KPQEAIPYCQKAISVCKSRV 309 (372)
Q Consensus 290 ---------~~~eAi~~~ekAl~i~~~rl 309 (372)
+|..=++.|++||.|++...
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788899999987754
No 160
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.0051 Score=58.89 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHH
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 312 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~l 312 (372)
.++|.-|+++|+..|+|.+|+=+|++++-|++.. +.-|.++|+++|-+|. ..++.-|.+||.+||.+...++..|
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n-~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN-PLYFQRLAEVLYTQGG----AENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhChHhHHHH
Confidence 6789999999999999999999999999887532 2335678888888887 4577899999999999988666555
Q ss_pred H
Q 017388 313 L 313 (372)
Q Consensus 313 ~ 313 (372)
-
T Consensus 229 ~ 229 (289)
T KOG3060|consen 229 F 229 (289)
T ss_pred H
Confidence 3
No 161
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.59 E-value=0.02 Score=46.34 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=58.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 017388 241 EVALEREDIETSLSDYQKALTILERMVEPD-SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (372)
Q Consensus 241 ev~~e~~~y~~Al~~y~~AL~I~~~l~~~~-~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~r 308 (372)
-..+..++|..|++.+.+.+++........ ......++.+++.++...|++++|+..++.||.+.+..
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999998876544 23577789999999999999999999999999997664
No 162
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.56 E-value=0.024 Score=48.67 Aligned_cols=97 Identities=23% Similarity=0.175 Sum_probs=73.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC---------------CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGD---------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD 270 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~---------------~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~ 270 (372)
++...+...+..|..+|....-. ......++..|+..+...|+|+.|+..+++++.+.+
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP------ 93 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDP------ 93 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST------
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC------
Confidence 46677778888888888543211 123578899999999999999999999999999854
Q ss_pred ChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Q 017388 271 SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 310 (372)
Q Consensus 271 ~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~ 310 (372)
.--.+|..|-.+|...|++..|+.+|++....+...++
T Consensus 94 --~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 94 --YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp --T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred --CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 33478899999999999999999999998888765543
No 163
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.55 E-value=0.016 Score=62.17 Aligned_cols=41 Identities=29% Similarity=0.459 Sum_probs=35.2
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 017388 77 LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (372)
Q Consensus 77 ~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~e 125 (372)
+..++|.+|..+|+++++| .|-.-..||.||.+.+.+.+++
T Consensus 496 ~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred ccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHhhhH
Confidence 3459999999999999999 5888889999999999886553
No 164
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.54 E-value=0.084 Score=46.25 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=81.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCC
Q 017388 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGD 138 (372)
Q Consensus 59 ~~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e 138 (372)
+..-++....|--.|..+-..|+.+.|++.|.+|+.+ .|+.+.+|++-+.+|.-.++.
T Consensus 36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~-------------- 93 (175)
T KOG4555|consen 36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDD-------------- 93 (175)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCCh--------------
Confidence 3444677778888999999999999999999999999 599999999999988733100
Q ss_pred CCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHH
Q 017388 139 SQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVA 218 (372)
Q Consensus 139 ~~~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~A 218 (372)
++..+|+..|
T Consensus 94 ---------------------------------------------------------------e~ALdDLn~A------- 103 (175)
T KOG4555|consen 94 ---------------------------------------------------------------EEALDDLNKA------- 103 (175)
T ss_pred ---------------------------------------------------------------HHHHHHHHHH-------
Confidence 0112345444
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017388 219 RAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 263 (372)
Q Consensus 219 r~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~ 263 (372)
+.+-..+ ..-..++|.--|-+|.-+|+-+.|..+|..|-.+-
T Consensus 104 leLag~~---trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 104 LELAGDQ---TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhcCcc---chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 3332111 22345778889999999999999999999998774
No 165
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.48 E-value=0.023 Score=48.72 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--C-CChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVE--P-DSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 309 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~--~-~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl 309 (372)
|-||-.|+..+..+|+|++++..-.++|..+..--. . +-..-..+-|+.+.++.-.|+.++|+..|++|-+++..|-
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERK 134 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERK 134 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Confidence 678999999999999999999999999998865321 1 1234455668999999999999999999999999988886
Q ss_pred HHH
Q 017388 310 QRL 312 (372)
Q Consensus 310 ~~l 312 (372)
+.+
T Consensus 135 GE~ 137 (144)
T PF12968_consen 135 GEM 137 (144)
T ss_dssp S--
T ss_pred CCC
Confidence 554
No 166
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.44 E-value=0.0051 Score=42.57 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~ 283 (372)
.++..||.++..+|++++|+..|+++|+.... + ..+++.||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-----~---~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-----D---PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----C---HHHHHHhhh
Confidence 57899999999999999999999999998643 2 367777764
No 167
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.17 Score=53.58 Aligned_cols=83 Identities=17% Similarity=0.055 Sum_probs=67.4
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017388 205 ESDLDLAWKMLDVARAIAEKHWGD--------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAE 276 (372)
Q Consensus 205 ~~dl~~Awe~Le~Ar~I~ek~~~~--------~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe 276 (372)
.++|..|.+.|+.|+.|+.+.+.. ..+++-|+.-|+-|++.+|+-.+|.+.|..+|.- .++|.+.+|.
T Consensus 188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~----~~~D~~~~Av 263 (652)
T KOG2376|consen 188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR----NPADEPSLAV 263 (652)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----cCCCchHHHH
Confidence 478999999999999999887653 2468899999999999999999999999877654 4678889999
Q ss_pred HHHHHHHHHHhCCCc
Q 017388 277 LNFRICLCLEIGSKP 291 (372)
Q Consensus 277 ~~~~Lg~a~~~~~~~ 291 (372)
+-.||-.+-.+..-+
T Consensus 264 ~~NNLva~~~d~~~~ 278 (652)
T KOG2376|consen 264 AVNNLVALSKDQNYF 278 (652)
T ss_pred HhcchhhhccccccC
Confidence 998886554444433
No 168
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.42 E-value=0.02 Score=61.46 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
+|+.+...|+.+..| .+-...+|+.+|-+.+..+++..|+.+|..|+.+... | ++++.||+.+|.
T Consensus 500 ~fs~~~~hle~sl~~-------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-----~---~eaWnNls~ayi 564 (777)
T KOG1128|consen 500 DFSEADKHLERSLEI-------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-----N---AEAWNNLSTAYI 564 (777)
T ss_pred hHHHHHHHHHHHhhc-------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-----c---hhhhhhhhHHHH
Confidence 555555555555444 3557889999999999999999999999999988643 3 589999999998
Q ss_pred hCCCchHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~ 303 (372)
..++-.+|-..++.|+.
T Consensus 565 ~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHhhhHHHHHHHHHHhh
Confidence 88876666666666653
No 169
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.39 E-value=0.02 Score=50.27 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=50.2
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCC
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK 290 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~ 290 (372)
+-.-++...||.++...++|+.|+..|++-+++. |.|+.+.-++|.+|+++..+..
T Consensus 44 ~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 44 EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCCCccHHHHHHHHHHHHHhh
Confidence 4456899999999999999999999999999886 5788999999999999988765
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.32 E-value=0.007 Score=44.89 Aligned_cols=43 Identities=28% Similarity=0.343 Sum_probs=38.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhc
Q 017388 76 ALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA 126 (372)
Q Consensus 76 ~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es 126 (372)
++..|+|++|+.+|.+++.. +|....+++.||.+|+..++.+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~ 43 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDE 43 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHH
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHH
Confidence 46789999999999999998 79999999999999999988754
No 171
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.20 E-value=0.098 Score=58.22 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 017388 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 235 ~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekA 301 (372)
.+..++.++...+++.+|+..|++++.+.+.. ...++.+-.++...|-...|+...++-
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~P~n--------~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLAPTS--------EEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 34556666666888877999999999885432 367777888888888888887777653
No 172
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.18 E-value=0.28 Score=51.91 Aligned_cols=65 Identities=22% Similarity=0.103 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
+.-++..|+.+|-..|+|++|+.+..+||.. .|.+.+.|+..|.+|...|++.+|...++.|-.+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 4568899999999999999999999999986 4667899999999999999999999999988754
No 173
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.02 Score=54.47 Aligned_cols=84 Identities=18% Similarity=0.098 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA 294 (372)
|.-|...|.+...-.|..+.-|.+-+..++...+|+....+.++||++-. .++..||-||.++.....|++|
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~--------N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP--------NLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh--------HHHHHHHHHHHHHHhhccccHH
Confidence 33444455555444677888999999999999999999999999999864 5579999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 017388 295 IPYCQKAISVCK 306 (372)
Q Consensus 295 i~~~ekAl~i~~ 306 (372)
|.+.++|..+.+
T Consensus 98 I~~Lqra~sl~r 109 (284)
T KOG4642|consen 98 IKVLQRAYSLLR 109 (284)
T ss_pred HHHHHHHHHHHh
Confidence 999999976653
No 174
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.11 E-value=0.28 Score=49.48 Aligned_cols=98 Identities=21% Similarity=0.282 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
.+..|.+..+.|-.+-..+ ++..-.+.|...+|+||...|+.+.|-.-|+.|..+...+-. .-.-.+++...+.|+.
T Consensus 221 ~LgdA~e~C~Ea~klal~~-Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd--rmgqv~al~g~Akc~~ 297 (518)
T KOG1941|consen 221 RLGDAMECCEEAMKLALQH-GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGD--RMGQVEALDGAAKCLE 297 (518)
T ss_pred ccccHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHH
Confidence 3444555566666665555 334567999999999999999999999999999999887641 1112344444555554
Q ss_pred hCCCchH-----HHHHHHHHHHHHHH
Q 017388 287 IGSKPQE-----AIPYCQKAISVCKS 307 (372)
Q Consensus 287 ~~~~~~e-----Ai~~~ekAl~i~~~ 307 (372)
-..-.++ |++.-.++++|-..
T Consensus 298 ~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 298 TLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHhhcccccchhHHHHHHHHHHHH
Confidence 4443444 88888888887543
No 175
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.11 E-value=0.24 Score=41.43 Aligned_cols=172 Identities=24% Similarity=0.156 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcC--cccCCCCccCCCCCCC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGS 143 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~--vLg~~~~~~~e~~~~~ 143 (372)
...+...+..+...+++..+...+..++.. ...+.....++.+|..+...+..... .+.......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 125 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD------- 125 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-------
Confidence 567778899999999999999999999985 33577888888888888877543211 000000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccc-cccCcChHHHHHHHHHHHHHHH
Q 017388 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAE-ADEDESDLDLAWKMLDVARAIA 222 (372)
Q Consensus 144 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~-~~ed~~dl~~Awe~Le~Ar~I~ 222 (372)
..... ... -... .....+++..|...+..+.. .
T Consensus 126 -----------~~~~~----~~~------------------------------~~~~~~~~~~~~~~~a~~~~~~~~~-~ 159 (291)
T COG0457 126 -----------PDPDL----AEA------------------------------LLALGALYELGDYEEALELYEKALE-L 159 (291)
T ss_pred -----------CCcch----HHH------------------------------HHHHHHHHHcCCHHHHHHHHHHHHh-c
Confidence 00000 000 0000 01123456666666655522 1
Q ss_pred HHhcCC-CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 017388 223 EKHWGD-SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 223 ek~~~~-~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekA 301 (372)
.. ....+..+..++..+...+++..|+..+.+++.+.... ....++.++.+|...+.+..|+.++.++
T Consensus 160 ----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 160 ----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred ----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 11 13577888888888999999999999999999998764 3578899999999999999999999999
Q ss_pred HHHHHH
Q 017388 302 ISVCKS 307 (372)
Q Consensus 302 l~i~~~ 307 (372)
+.....
T Consensus 229 ~~~~~~ 234 (291)
T COG0457 229 LELDPD 234 (291)
T ss_pred HhhCcc
Confidence 998764
No 176
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.09 E-value=0.18 Score=50.01 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=62.4
Q ss_pred CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 017388 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (372)
Q Consensus 229 ~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~r 308 (372)
...+|+.|.-|+.-++-..+++.|+..+.+||.--++. +.+-..||.++...|+|..|++.++..+.--...
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c--------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC--------VRASIILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc--------eehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 46789999999999999999999999999999876654 4677789999999999999999999888654443
Q ss_pred HH
Q 017388 309 VQ 310 (372)
Q Consensus 309 l~ 310 (372)
+.
T Consensus 248 l~ 249 (389)
T COG2956 248 LS 249 (389)
T ss_pred HH
Confidence 33
No 177
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.09 E-value=0.074 Score=42.94 Aligned_cols=77 Identities=19% Similarity=0.077 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDS--MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~--~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~ 283 (372)
+|+..|.+.|.............. ..+.-+..++|.++...|++++|+..+++|+.|.++.- +.+.++.++..+..
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~~~~~ 89 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALSWLAN 89 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHH
Confidence 689999888888887776664432 24677899999999999999999999999999999875 45556666655554
Q ss_pred H
Q 017388 284 C 284 (372)
Q Consensus 284 a 284 (372)
.
T Consensus 90 l 90 (94)
T PF12862_consen 90 L 90 (94)
T ss_pred H
Confidence 3
No 178
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.019 Score=58.10 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS-------RHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 231 ~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~-------r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
..|...-.-|.+++..|+|..|+..|++|+..+..-.+.+. -..--+|.||+.||..+.+|..|+.+|.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 35777888899999999999999999999999885444321 12346899999999999999999999999997
Q ss_pred HH
Q 017388 304 VC 305 (372)
Q Consensus 304 i~ 305 (372)
+-
T Consensus 286 ~~ 287 (397)
T KOG0543|consen 286 LD 287 (397)
T ss_pred cC
Confidence 64
No 179
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.04 E-value=0.15 Score=53.82 Aligned_cols=138 Identities=20% Similarity=0.123 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~ 144 (372)
....++-++.-|...|+|++|..+..+|++. .|.+.++|+.-|+.|-..
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~----------------------- 241 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHA----------------------- 241 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHC-----------------------
Confidence 4677888899999999999999999999997 699999999999998854
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 017388 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (372)
Q Consensus 145 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek 224 (372)
|++..|.+.++.||.+
T Consensus 242 -------------------------------------------------------------G~~~~Aa~~~~~Ar~L--- 257 (517)
T PF12569_consen 242 -------------------------------------------------------------GDLKEAAEAMDEAREL--- 257 (517)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHhC---
Confidence 4788888899999853
Q ss_pred hcCCCccHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-CC-CC-h--hHHHHHHHHHHHHHhCCCchHHHHH
Q 017388 225 HWGDSMEKVD--ILSALAEVALEREDIETSLSDYQKALTILERMV-EP-DS-R--HIAELNFRICLCLEIGSKPQEAIPY 297 (372)
Q Consensus 225 ~~~~~~~~A~--~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~-~~-~~-r--~iAe~~~~Lg~a~~~~~~~~eAi~~ 297 (372)
++++ +-...+.-.+..|++++|......- ..-- ++ .+ . +-..-....|.+|.+.|++..|+..
T Consensus 258 ------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F----tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 258 ------DLADRYINSKCAKYLLRAGRIEEAEKTASLF----TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred ------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh----cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2333 2345677788899999888765422 2111 11 11 1 1223334579999999999999999
Q ss_pred HHHHHHHHHH
Q 017388 298 CQKAISVCKS 307 (372)
Q Consensus 298 ~ekAl~i~~~ 307 (372)
|...+.++..
T Consensus 328 ~~~v~k~f~~ 337 (517)
T PF12569_consen 328 FHAVLKHFDD 337 (517)
T ss_pred HHHHHHHHHH
Confidence 9999988743
No 180
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.03 E-value=0.067 Score=59.46 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 236 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 236 ~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
+..+|-.|++-+++.+|+.+|+.||++-++-+ +++..||.+|...|+|.-|++.|.+|..+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~--------n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY--------NLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhH--------HHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 34477778888888888888888887765544 77777888888888888888877776643
No 181
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.93 E-value=0.38 Score=40.21 Aligned_cols=96 Identities=24% Similarity=0.153 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 208 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALAE-VALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 208 l~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGe-v~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
+..+...+..+..++.+...........+..++. ++...++|+.|+..|.+++.+... ....+..++.++..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 178 (291)
T COG0457 104 LLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPE-----LNELAEALLALGALLE 178 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ccchHHHHHHhhhHHH
Confidence 3334444556666666655422222333444444 999999999999999999553221 2345677788888899
Q ss_pred hCCCchHHHHHHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAISVCKSR 308 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~i~~~r 308 (372)
..+++..|+.++.+++.+....
T Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~ 200 (291)
T COG0457 179 ALGRYEEALELLEKALKLNPDD 200 (291)
T ss_pred HhcCHHHHHHHHHHHHhhCccc
Confidence 9999999999999999988773
No 182
>PRK15331 chaperone protein SicA; Provisional
Probab=95.82 E-value=0.17 Score=45.59 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCC
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~ 142 (372)
-+....+...|..++..|+|++|..+|+-.|-+ .|-+.+.++.+|-++.-+
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~--------------------- 84 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLK--------------------- 84 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHH---------------------
Confidence 345678889999999999999999999988875 455566666666665544
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 017388 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (372)
Q Consensus 143 ~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ 222 (372)
..++.|...+-+|..+-
T Consensus 85 ---------------------------------------------------------------k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 85 ---------------------------------------------------------------KQFQKACDLYAVAFTLL 101 (165)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHHHcc
Confidence 26788888888887654
Q ss_pred HHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017388 223 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALT 261 (372)
Q Consensus 223 ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~ 261 (372)
...+.+ ++..|..++..++...|+..|..++.
T Consensus 102 ~~dp~p-------~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 KNDYRP-------VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cCCCCc-------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 332222 67778888888999999999998887
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.79 E-value=0.57 Score=45.04 Aligned_cols=171 Identities=17% Similarity=0.149 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCccc------CCCCccCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV------SVPKKEGD 138 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg------~~~~~~~e 138 (372)
-+..|.+.|...+..|+|.+|++.|...... -.+|+.. -.+.+.++.|++..+.++.++.. ..|..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~---~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~--- 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYS---EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH--- 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCccc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC---
Confidence 4778999999999999999999999887732 2344444 34666777777766655443222 11210
Q ss_pred CCCCCCCcccc--ccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHH
Q 017388 139 SQQGSDKDDSV--KNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLD 216 (372)
Q Consensus 139 ~~~~~~~d~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le 216 (372)
++.|-.. ++-. ...+ .+....|-..+..-+.
T Consensus 105 ----~n~dY~~YlkgLs------------------~~~~-------------------------i~~~~rDq~~~~~A~~ 137 (254)
T COG4105 105 ----PNADYAYYLKGLS------------------YFFQ-------------------------IDDVTRDQSAARAAFA 137 (254)
T ss_pred ----CChhHHHHHHHHH------------------Hhcc-------------------------CCccccCHHHHHHHHH
Confidence 0000000 0000 0000 0000123334444444
Q ss_pred HHHHHHHHhcCC-------------CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017388 217 VARAIAEKHWGD-------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (372)
Q Consensus 217 ~Ar~I~ek~~~~-------------~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~ 283 (372)
-...+..+.++. ...+|.--+.+|..|+++|.|-.|+.-++..++-. ++.+.+-++|..|..
T Consensus 138 ~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~e 212 (254)
T COG4105 138 AFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEE 212 (254)
T ss_pred HHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHH
Confidence 444555555543 12466667889999999999999999999887763 355677899999999
Q ss_pred HHHhCCCchHHH
Q 017388 284 CLEIGSKPQEAI 295 (372)
Q Consensus 284 a~~~~~~~~eAi 295 (372)
+|..+|-.++|-
T Consensus 213 aY~~lgl~~~a~ 224 (254)
T COG4105 213 AYYALGLTDEAK 224 (254)
T ss_pred HHHHhCChHHHH
Confidence 999999988873
No 184
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.58 E-value=0.0085 Score=39.54 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHH
Q 017388 256 YQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 295 (372)
Q Consensus 256 y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi 295 (372)
|++||++.+ .-+.+|++||.+|...|++++|+
T Consensus 2 y~kAie~~P--------~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP--------NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC--------CCHHHHHHHHHHHHHCcCHHhhc
Confidence 778888753 44699999999999999999986
No 185
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=1.5 Score=42.35 Aligned_cols=93 Identities=23% Similarity=0.110 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKV-DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 284 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A-~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a 284 (372)
+.|..+-.+++.|..+|..... ++.| .++..-| =.++.-+.+.|+..|+++|.+.+.- ...+.--+.+-+.+.+
T Consensus 85 ~klsEvvdl~eKAs~lY~E~Gs--pdtAAmaleKAa-k~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 85 SKLSEVVDLYEKASELYVECGS--PDTAAMALEKAA-KALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRV 159 (308)
T ss_pred HHhHHHHHHHHHHHHHHHHhCC--cchHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhH
Confidence 3567777788888888887754 3444 4444444 4478889999999999999998752 1223345666778999
Q ss_pred HHhCCCchHHHHHHHHHHH
Q 017388 285 LEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 285 ~~~~~~~~eAi~~~ekAl~ 303 (372)
|-+..+|.+|...|.+-..
T Consensus 160 lVrl~kf~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGV 178 (308)
T ss_pred hhhhHHhhHHHHHHHHhhh
Confidence 9999999999988887543
No 186
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.51 E-value=0.011 Score=39.00 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 017388 88 CFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (372)
Q Consensus 88 ~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~e 125 (372)
+|.+|+++ +|..+.+|++||.+|+..|+.+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~ 30 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYE 30 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHH
Confidence 58899998 7999999999999999887654
No 187
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.51 E-value=0.22 Score=47.21 Aligned_cols=53 Identities=25% Similarity=0.130 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhh
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~ 124 (372)
++|.-|+.+|.-+...|=..-|..-|.++|.| .|.++++|+.+|.-|+.-+..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~f 115 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNF 115 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccc
Confidence 57999999999999999999999999999999 499999999999888866544
No 188
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.46 E-value=0.014 Score=34.86 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 276 ELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 276 e~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
.+|+++|.+|...++++.|+.+|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 57899999999999999999999999875
No 189
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.44 E-value=0.12 Score=55.90 Aligned_cols=104 Identities=21% Similarity=0.113 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~ 144 (372)
-+..+.-.|..+...|.+.+|-.+|-.|+.+ .|+-..+...+|++|++.|+.
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~-------------------- 734 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSP-------------------- 734 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCc--------------------
Confidence 3566788999999999999999999999998 788888999999999977411
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 017388 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (372)
Q Consensus 145 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek 224 (372)
.+..+.-||--|..
T Consensus 735 --------------------------------------------------------------~la~~~~~L~dalr---- 748 (799)
T KOG4162|consen 735 --------------------------------------------------------------RLAEKRSLLSDALR---- 748 (799)
T ss_pred --------------------------------------------------------------chHHHHHHHHHHHh----
Confidence 12222223333332
Q ss_pred hcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017388 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (372)
Q Consensus 225 ~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~ 265 (372)
..+..-++|..||.|+..+|++++|..+|+.|+.+-..
T Consensus 749 ---~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 749 ---LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred ---hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 24566789999999999999999999999999998654
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.41 E-value=0.037 Score=41.51 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
++++.|+++++.++.+ .|.-...|..+|.++..+|+|.+|+.+|+++|.+.+
T Consensus 9 ~~~~~A~~~~~~~l~~-------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 9 EDYEEALEVLERALEL-------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CCHHHHHHHHHHHHHh-------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5788888888877766 355788899999999999999999999999997654
No 191
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.39 E-value=0.019 Score=34.20 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKALTIL 263 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL~I~ 263 (372)
.+|..+|.++...++|+.|+..|++++.+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 578999999999999999999999999864
No 192
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.30 E-value=0.12 Score=55.09 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ 121 (372)
.|+.+..+++..+.|.......+..|.- +|+.++.+-..|-.|.-+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~l 54 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCL 54 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcc
Confidence 6788899999999999999998888882 466666666677666654
No 193
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.23 E-value=0.22 Score=55.53 Aligned_cols=145 Identities=14% Similarity=0.033 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCcc
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d~ 147 (372)
....+|-.|+.-+++..||.-|+-||.+ .|.-..++..+|.||...||+..+
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~A-------------------- 615 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHA-------------------- 615 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehH--------------------
Confidence 3445899999999999999999999998 799999999999999988766332
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC
Q 017388 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG 227 (372)
Q Consensus 148 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~~ 227 (372)
.+ .|.|...
T Consensus 616 ----------------------------------------------------------------lK-------vF~kAs~ 624 (1238)
T KOG1127|consen 616 ----------------------------------------------------------------LK-------VFTKASL 624 (1238)
T ss_pred ----------------------------------------------------------------HH-------hhhhhHh
Confidence 11 1211111
Q ss_pred CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 228 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 228 ~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
..|.---+.+..+.+.+..|.|..|+.-|..-+.-+....+ -.-.+|++|.+++..+...|=+..|..+|+++|.+|.-
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~-~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT-GQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 12333344556777888999999999999988777655432 23468999999999999999999999999999999988
Q ss_pred HHHHH
Q 017388 308 RVQRL 312 (372)
Q Consensus 308 rl~~l 312 (372)
.+.+.
T Consensus 704 ~l~h~ 708 (1238)
T KOG1127|consen 704 SLIHS 708 (1238)
T ss_pred HHHHh
Confidence 77666
No 194
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.23 E-value=0.2 Score=43.08 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=64.0
Q ss_pred cHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHhcCCC---C-hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 231 EKVDILSALAE--VALEREDIETSLSDYQKALTILERMVEPD---S-RHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 231 ~~A~~~~~LGe--v~~e~~~y~~Al~~y~~AL~I~~~l~~~~---~-r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
.++.+|+.|++ -.+.-|-|++|...|++|+++-+.+.+.+ | ---|.||-.|+-++-.+|+|++++..-.+||.-
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 47788888765 45677999999999999999999887654 3 236899999999999999999999999999998
Q ss_pred HHHH
Q 017388 305 CKSR 308 (372)
Q Consensus 305 ~~~r 308 (372)
+..|
T Consensus 85 FNRR 88 (144)
T PF12968_consen 85 FNRR 88 (144)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 8776
No 195
>PRK11906 transcriptional regulator; Provisional
Probab=95.22 E-value=0.31 Score=50.46 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=58.5
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 017388 221 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (372)
Q Consensus 221 I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ek 300 (372)
.|++.....|+.|.+|..+|.+..-.|+.+.|+.++++||++- .++++-...+|.+-...-...++||..|-+
T Consensus 360 ~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-------P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 360 LFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE-------PRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------chhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 3333334468899999999999999999999999999999983 456778888888855556667899988855
No 196
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.19 E-value=0.17 Score=54.35 Aligned_cols=84 Identities=18% Similarity=0.153 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
.++.|..+|..||.+ ....++|+.-+.+...++++++|+..++.||+.+..+. ..|..||.+|+
T Consensus 633 e~eraR~llakar~~--------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~--------Kl~lmlGQi~e 696 (913)
T KOG0495|consen 633 ELERARDLLAKARSI--------SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH--------KLWLMLGQIEE 696 (913)
T ss_pred cHHHHHHHHHHHhcc--------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH--------HHHHHHhHHHH
Confidence 455666666666542 34688999999999999999999999999999886553 78999999999
Q ss_pred hCCCchHHHHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~i~~ 306 (372)
..++.+.|...|-+-+..|.
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCP 716 (913)
T ss_pred HHHHHHHHHHHHHhccccCC
Confidence 99999999999998776553
No 197
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.10 E-value=0.032 Score=38.02 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 309 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl 309 (372)
|++|..||-+-....+|++|+.-|++||+|++..+
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999987654
No 198
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.10 E-value=1.1 Score=42.45 Aligned_cols=74 Identities=27% Similarity=0.344 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHH
Q 017388 232 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL-EIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~---y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~-~~~~~~~eAi~~~ekAl~i~ 305 (372)
.++.|.-|+++.....+ -+.|...|++|+.+....++|.||.---...|.+.-| ...++.++|+..-++|+.-.
T Consensus 122 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 122 KGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 57788888888855433 3899999999999999999999987555555555544 77889999888888876543
No 199
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.07 E-value=0.42 Score=44.72 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=74.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCccccccccCCC
Q 017388 77 LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGE 156 (372)
Q Consensus 77 ~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d~~~~~~~~~e 156 (372)
-....+++|+..|.-|+-. ....++.+-..|.+++.++..+-.++
T Consensus 88 ~~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~LrlAWlyR~~~---------------------------------- 132 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRLAWLYRDLG---------------------------------- 132 (214)
T ss_pred CCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHhhccC----------------------------------
Confidence 3456899999999988876 55667777788888888887776442
Q ss_pred CCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC------CCc
Q 017388 157 SSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG------DSM 230 (372)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~~------~~~ 230 (372)
+-+....+|..|+..|.+... ..+
T Consensus 133 --------------------------------------------------~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~ 162 (214)
T PF09986_consen 133 --------------------------------------------------DEENEKRFLRKALEFYEEAYENEDFPIEGM 162 (214)
T ss_pred --------------------------------------------------CHHHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 111122345555555544432 235
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017388 231 EKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (372)
Q Consensus 231 ~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~ 265 (372)
.-+.++..+|+++...|+|++|+..|.+.+.....
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 67889999999999999999999999988876543
No 200
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.07 E-value=0.15 Score=49.22 Aligned_cols=88 Identities=18% Similarity=0.118 Sum_probs=68.7
Q ss_pred cChHHHHHHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh--cCCCCh----hHHH
Q 017388 205 ESDLDLAWKMLDVARAIAE-KHWGDSMEKVDILSALAEVALERE-DIETSLSDYQKALTILERM--VEPDSR----HIAE 276 (372)
Q Consensus 205 ~~dl~~Awe~Le~Ar~I~e-k~~~~~~~~A~~~~~LGev~~e~~-~y~~Al~~y~~AL~I~~~l--~~~~~r----~iAe 276 (372)
.+|++.|.-|+.++..+.. ..+.....+++++.+.|.-.+..+ +|+.|+..+++|++|.... ....++ .-..
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 4789999999999998884 222224679999999999999999 9999999999999997652 112232 3466
Q ss_pred HHHHHHHHHHhCCCch
Q 017388 277 LNFRICLCLEIGSKPQ 292 (372)
Q Consensus 277 ~~~~Lg~a~~~~~~~~ 292 (372)
++..|+.+|...+.++
T Consensus 86 iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYE 101 (278)
T ss_pred HHHHHHHHHHcCCChH
Confidence 7778899998888764
No 201
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.07 E-value=0.023 Score=35.87 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 276 ELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 276 e~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
+++|++|.+|...|++++|+.+|++.+.-
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 47899999999999999999999998864
No 202
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.06 E-value=0.75 Score=47.75 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ 121 (372)
..-..+.+...+..|+|+.|...+...+.. +|.+..+.-..|..+++.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~ 353 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEA 353 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc
Confidence 445678888889999999999988884443 577777777777777744
No 203
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.93 E-value=0.56 Score=49.00 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ek 300 (372)
...+...||......|+..+||+.|+..++.... ...-.+|++|-.+|-..+.|.++.....+
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~------~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN------LDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc------cchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3566778999999999999999999988766431 12457899999999988888766554433
No 204
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.89 E-value=0.8 Score=49.72 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017388 216 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALT 261 (372)
Q Consensus 216 e~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~ 261 (372)
+.|+.+|.+.... -..+|+.|...|...|++++|+..|++.+.
T Consensus 377 ~~A~~vf~~m~~~---d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 377 EDARNVFDRMPRK---NLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHhCCCC---CeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444455444322 134677888888888888888888877543
No 205
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.88 E-value=0.039 Score=52.10 Aligned_cols=87 Identities=9% Similarity=0.036 Sum_probs=70.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
+.+-...-+..+||-=|...+.-.|+++.+++-||.-+..-|+|+.|.+.|...|++-... --+|.|.|+++
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y--------~Ya~lNRgi~~ 143 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------NYAHLNRGIAL 143 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc--------hHHHhccceee
Confidence 3444444556777777777777778999999999999999999999999999999886554 37899999999
Q ss_pred HhCCCchHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQK 300 (372)
Q Consensus 286 ~~~~~~~eAi~~~ek 300 (372)
.+.|+|.-|..-|.+
T Consensus 144 YY~gR~~LAq~d~~~ 158 (297)
T COG4785 144 YYGGRYKLAQDDLLA 158 (297)
T ss_pred eecCchHhhHHHHHH
Confidence 999999888765543
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.092 Score=51.25 Aligned_cols=77 Identities=10% Similarity=0.002 Sum_probs=60.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh------------------------------cCCCChhHHHH
Q 017388 228 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM------------------------------VEPDSRHIAEL 277 (372)
Q Consensus 228 ~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l------------------------------~~~~~r~iAe~ 277 (372)
.+|.-+.-|..||.+|+.+++|..|+.-|.+|++|.... +. -++.-..+
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~-~D~~~ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA-LDPANIRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-cCCccHHH
Confidence 346678999999999999999999999999999886431 11 12333466
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 278 NFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 278 ~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
.+-||+.+...++|.+|+..+++-+++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7778888899999999999888877664
No 207
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.67 E-value=1.1 Score=51.53 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
++++.|+++++..+. .+..+ -..+|+.|...|...|++++|+..|++.... -+.|+ ..+|..|-.+|
T Consensus 663 G~~eeA~~l~~eM~k-----~G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~---g~~Pd----vvtyN~LI~gy 729 (1060)
T PLN03218 663 GDLDKAFEILQDARK-----QGIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRPT----VSTMNALITAL 729 (1060)
T ss_pred CCHHHHHHHHHHHHH-----cCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHH
Confidence 456666655555432 11112 3568999999999999999999988875432 12121 36788899999
Q ss_pred HhCCCchHHHHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i 304 (372)
...|++++|+..|++....
T Consensus 730 ~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHc
Confidence 9999999999999876544
No 208
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.91 Score=44.56 Aligned_cols=154 Identities=21% Similarity=0.207 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhc--CcccCCCCccCCCCCCCCC
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA--DPLVSVPKKEGDSQQGSDK 145 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es--~vLg~~~~~~~e~~~~~~~ 145 (372)
..+..|...+..|+|..|...|..++.. .|+.+++.+.|+.+|+..++.+. .+|...|...
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~--------- 198 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA--------- 198 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc---------
Confidence 4566788899999999999999999998 68889999999999998876532 2343322100
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH-----
Q 017388 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA----- 220 (372)
Q Consensus 146 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~----- 220 (372)
+ ....-.+....+++..|..
T Consensus 199 -----------------------------~--------------------------~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 199 -----------------------------Q--------------------------DKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred -----------------------------h--------------------------hhHHHHHHHHHHHHHHHhcCCCHH
Confidence 0 0000113334566666652
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHH
Q 017388 221 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (372)
Q Consensus 221 I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~e 299 (372)
-+++.....+.-.+.-+.||.++.-.|+++.|++++- .|.++-.+..+...-..+ =..|...|.-+.+...|+
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll---~~l~~d~~~~d~~~Rk~l---le~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL---ALLRRDRGFEDGEARKTL---LELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHhcccccCcHHHHHH---HHHHHhcCCCCHHHHHHH
Confidence 2233333456667888999999999999999999885 455554444443332222 233444444444444443
No 209
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=0.51 Score=45.40 Aligned_cols=97 Identities=21% Similarity=0.190 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
.|+.|-..|..|...|+..-. ....|..|...|-+..+...+.+++..|++|..++.+.-.++. -|.++-+-|.++
T Consensus 46 ~feKakdcLlkA~~~yEnnrs-lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt--AAmaleKAak~l- 121 (308)
T KOG1585|consen 46 KFEKAKDCLLKASKGYENNRS-LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT--AAMALEKAAKAL- 121 (308)
T ss_pred cHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch--HHHHHHHHHHHh-
Confidence 677777777777777766532 2457899999999999999999999999999999988754332 234444444443
Q ss_pred hCCCchHHHHHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~i~~~ 307 (372)
..-++++|+..|+++++|++.
T Consensus 122 env~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhc
Confidence 345778999999999988764
No 210
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.57 E-value=0.8 Score=47.54 Aligned_cols=80 Identities=13% Similarity=-0.090 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
....|.+.++.|+. ..|...-...++|..++..|++.+|+..++..+.-. |.-+..|.-|+.+|.
T Consensus 355 k~~~A~e~~~kal~-------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--------p~dp~~w~~LAqay~ 419 (484)
T COG4783 355 KAKEAIERLKKALA-------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--------PEDPNGWDLLAQAYA 419 (484)
T ss_pred ChHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------CCCchHHHHHHHHHH
Confidence 34445444444443 334556778899999999999998888777655432 233466777777777
Q ss_pred hCCCchHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKA 301 (372)
Q Consensus 287 ~~~~~~eAi~~~ekA 301 (372)
.+|+..+|...+-..
T Consensus 420 ~~g~~~~a~~A~AE~ 434 (484)
T COG4783 420 ELGNRAEALLARAEG 434 (484)
T ss_pred HhCchHHHHHHHHHH
Confidence 776666665554433
No 211
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.46 E-value=0.029 Score=58.15 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=62.6
Q ss_pred CccHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhcC----C-----CChhHHHHHHHHHHHHHhCCCchHHHH
Q 017388 229 SMEKVDI--LSALAEVALEREDIETSLSDYQKALT-ILERMVE----P-----DSRHIAELNFRICLCLEIGSKPQEAIP 296 (372)
Q Consensus 229 ~~~~A~~--~~~LGev~~e~~~y~~Al~~y~~AL~-I~~~l~~----~-----~~r~iAe~~~~Lg~a~~~~~~~~eAi~ 296 (372)
++++..| +++||.|++..+.|.-++.+|.+||+ ...++-. . ..-.--+++||.|+.|-..|++-.|..
T Consensus 277 T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~Afq 356 (696)
T KOG2471|consen 277 TPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQ 356 (696)
T ss_pred cchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHH
Confidence 3555555 57999999999999999999999995 4444321 1 112234789999999999999999999
Q ss_pred HHHHHHHHHHH
Q 017388 297 YCQKAISVCKS 307 (372)
Q Consensus 297 ~~ekAl~i~~~ 307 (372)
+|++|+.++.+
T Consensus 357 Cf~~av~vfh~ 367 (696)
T KOG2471|consen 357 CFQKAVHVFHR 367 (696)
T ss_pred HHHHHHHHHhc
Confidence 99999988854
No 212
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.30 E-value=1.3 Score=50.88 Aligned_cols=166 Identities=10% Similarity=0.045 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcC--cccCCCCccCCCCCCCC
Q 017388 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGSD 144 (372)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~--vLg~~~~~~~e~~~~~~ 144 (372)
..+..+...|...|++++|..+|.+.... | ..|. ..+|..+..++...++.+.+ ++....+. .. .+
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~--G~--~p- 682 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ--GI--KL- 682 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CC--CC-
Confidence 46667778899999999999999987653 2 2344 45777777777766554322 11110000 00 00
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 017388 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (372)
Q Consensus 145 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek 224 (372)
+. .+. .. .....-..++++.|+++|+..+.
T Consensus 683 -d~----------~ty---ns--------------------------------LI~ay~k~G~~eeA~~lf~eM~~---- 712 (1060)
T PLN03218 683 -GT----------VSY---SS--------------------------------LMGACSNAKNWKKALELYEDIKS---- 712 (1060)
T ss_pred -CH----------HHH---HH--------------------------------HHHHHHhCCCHHHHHHHHHHHHH----
Confidence 00 000 00 00000112456666655554321
Q ss_pred hcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 017388 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 225 ~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~ 303 (372)
.+..+. ..+|+.|-..|...|++++|+..|++.... -+.|+ ..+|..|-.+|...|+++.|...|.+.+.
T Consensus 713 -~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~---Gi~Pd----~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 713 -IKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL---GLCPN----TITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred -cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122233 467999999999999999999999986532 22222 36778888899999999999999998764
No 213
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=94.14 E-value=0.5 Score=35.82 Aligned_cols=60 Identities=28% Similarity=0.274 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHHhh
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYG-ELALECVNAYYQYGRALLYKA 122 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~G-e~~pe~A~~y~~yG~ALl~~a 122 (372)
+..|..++..|..+-..|+|.+|+.+|.+|++.+..... +..|..-.++...-+-++..+
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RA 62 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERA 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999987765 456666666655555555443
No 214
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=93.97 E-value=0.49 Score=36.98 Aligned_cols=60 Identities=18% Similarity=0.087 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHHh
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYK 121 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~-Ge~~pe~A~~y~~yG~ALl~~ 121 (372)
++..|..|+.+|...-..|+|++|..+|..||+.+.... .+..|..-..+..--.-++..
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~R 62 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSR 62 (75)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999988744 788888776665544444444
No 215
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=93.96 E-value=0.54 Score=36.49 Aligned_cols=61 Identities=21% Similarity=0.163 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHHhh
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~-Ge~~pe~A~~y~~yG~ALl~~a 122 (372)
.+..|..|+.+|...-..|+|.+|+.+|.+|++.+.... .+..|.....+..--.-++..+
T Consensus 2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~Ra 63 (75)
T cd02678 2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRA 63 (75)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999998765 5677777777666555555443
No 216
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=93.94 E-value=0.48 Score=37.24 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--hhCCCChhHHHHHHHHHHHHHHhhhh
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVS--HYGELALECVNAYYQYGRALLYKAQE 124 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~--~~Ge~~pe~A~~y~~yG~ALl~~ar~ 124 (372)
..|..+..++..+-..|+|.+|+.+|.+|++.+.. .|+...|..-..+ .+++--++.|.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~i--r~K~~eYl~RA 64 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTI--QEKSNEYLDRA 64 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH--HHHHHHHHHHH
Confidence 35788999999999999999999999999999988 6776666665554 45554444443
No 217
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.91 E-value=0.55 Score=48.06 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017388 216 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKA 259 (372)
Q Consensus 216 e~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~A 259 (372)
+.|+.+.++.....|.--.+|..|+.+|+..|+|+.|+--+..|
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 45555555554555778899999999999999999999766644
No 218
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.90 E-value=0.16 Score=50.91 Aligned_cols=83 Identities=12% Similarity=0.000 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA 294 (372)
|+.|..+|.+.....+.-+-.|.+-+..|+...+|..|..|...||.+-+.+ ..+|.+.|.+-..+|+..+|
T Consensus 113 y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y--------~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 113 YEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY--------VKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH--------HHHHHHHHHHHHHHhhHHHH
Confidence 4555666666655455567788899999999999999999999999997765 48999999999999999999
Q ss_pred HHHHHHHHHHH
Q 017388 295 IPYCQKAISVC 305 (372)
Q Consensus 295 i~~~ekAl~i~ 305 (372)
.+-|+.+|.+-
T Consensus 185 KkD~E~vL~LE 195 (536)
T KOG4648|consen 185 KKDCETVLALE 195 (536)
T ss_pred HHhHHHHHhhC
Confidence 99999998763
No 219
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.80 E-value=2 Score=41.61 Aligned_cols=51 Identities=18% Similarity=0.006 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhC
Q 017388 230 MEKVDILSALAEVALER------EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 288 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~------~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~ 288 (372)
...++++..+|.-.... +.++.++..|++|+.+..... .+|+.+|..+...
T Consensus 249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE--------KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH--------HHHHHHHHHHHHH
Confidence 45789999999999888 999999999999999977654 6777777766544
No 220
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.79 E-value=0.56 Score=42.53 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCch
Q 017388 213 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 292 (372)
Q Consensus 213 e~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~ 292 (372)
+-|+.-+.-++..++ ...+-.+|..||+.|...|+++.|+..|.++.+... ...++.+.++++-.+..+.+++.
T Consensus 17 ~~Le~elk~~~~n~~-kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 17 EKLEAELKDAKSNLG-KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHH
Confidence 335555555555443 356889999999999999999999999999766432 23456788888888889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 017388 293 EAIPYCQKAISVCKS 307 (372)
Q Consensus 293 eAi~~~ekAl~i~~~ 307 (372)
....+..+|-.++..
T Consensus 91 ~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 91 HVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999888766
No 221
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=93.76 E-value=0.54 Score=40.57 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-----Ch---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEPD-----SR---HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 235 ~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~-----~r---~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
-|++||+..+..+++=.|+-+|++||.+-+.+...+ .+ .++. -+||+.-|+.+|+.+=.+.|.+-|-+-.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~Vis-CHNLA~FWR~~gd~~yELkYLqlASE~V 80 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVIS-CHNLADFWRSQGDSDYELKYLQLASEKV 80 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999984322 12 2344 4599999999999999999998876543
No 222
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.57 E-value=0.11 Score=32.58 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKALTIL 263 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL~I~ 263 (372)
+++..+|.++...|++++|+..|++.+.-.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 478999999999999999999999998764
No 223
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.45 E-value=1.6 Score=48.35 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ 121 (372)
+++|..|..+-++|.-++++=+++..+++|+++.. +....| +-..||+|++-|-..
T Consensus 816 lEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE-~~DRiH--Lr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 816 LEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAE-TKDRIH--LRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHh-hcccee--hhhhHHHHHHHHHhh
Confidence 67888999999999999999999999999999953 333344 446899998877644
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.41 E-value=0.25 Score=51.51 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
.++..|-++|+..+..| |+-+=-++..|.++.-.|+.+.|+..|++|+..+.+.-. .-.-++|-||.+|
T Consensus 247 ~~~~~a~~lL~~~~~~y-------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q----l~~l~~~El~w~~ 315 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY-------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ----LHHLCYFELAWCH 315 (468)
T ss_pred CCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh----HHHHHHHHHHHHH
Confidence 46777766666666554 344566788899999999999999999999965544321 1247789999999
Q ss_pred HhCCCchHHHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKAIS 303 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~ 303 (372)
..+.+|++|..+|.+.+.
T Consensus 316 ~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHchHHHHHHHHHHHHh
Confidence 999999999999988764
No 225
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=4.4 Score=40.61 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~ 144 (372)
.|..+-..|+-|++.++|..|+.+|.+.+..-. + .-.-.|.+|++=+-|-++++
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc---~-D~dlnavLY~NRAAa~~~l~---------------------- 133 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC---A-DPDLNAVLYTNRAAAQLYLG---------------------- 133 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC---C-CccHHHHHHhhHHHHHHHHH----------------------
Confidence 688888999999999999999999999987632 2 23455677777776766663
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 017388 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (372)
Q Consensus 145 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek 224 (372)
+|-.|+. =+.+
T Consensus 134 --------------------------------------------------------------NyRs~l~-------Dcs~ 144 (390)
T KOG0551|consen 134 --------------------------------------------------------------NYRSALN-------DCSA 144 (390)
T ss_pred --------------------------------------------------------------HHHHHHH-------HHHH
Confidence 2222222 2222
Q ss_pred hcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017388 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (372)
Q Consensus 225 ~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~ 265 (372)
.+...+..+.+|.+=+..++++++|..|+......|.|...
T Consensus 145 al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 145 ALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 23335677888999999999999999999999888877653
No 226
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.14 E-value=1.2 Score=48.22 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ek 300 (372)
+.+|..|...+...|+++.|...+++.+.+. |+ -..+|..|..+|...|++++|...++.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-----p~---~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMG-----PE---KLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-----CC---CCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 4567788888888888888877777665432 22 235788888899999998888877765
No 227
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.16 Score=50.50 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=77.5
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017388 204 DESDLDLAWKMLDVARAIAEKHWG----DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNF 279 (372)
Q Consensus 204 d~~dl~~Awe~Le~Ar~I~ek~~~----~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~ 279 (372)
+.|+.--...-|..|+..|.+-+. +..-.|.+|+|-+-..+..|||..||.|..++|.+...++ .+||
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~--------Ka~~ 157 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL--------KAYI 157 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh--------hhhh
Confidence 345555556668888888866543 2233688999999999999999999999999999976654 8999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 280 RICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 280 ~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
+=+.|+..+.+|.+|+..++..+.|...
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999888776543
No 228
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=93.07 E-value=0.15 Score=54.39 Aligned_cols=77 Identities=16% Similarity=0.020 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHH
Q 017388 216 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 295 (372)
Q Consensus 216 e~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi 295 (372)
..+..|+.+. ++..+++...|-.....|+-++|...-+.+|.+-.+ --.||+-+|+.++...+|++||
T Consensus 28 K~~~~iL~k~----~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~--------S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 28 KLIKQILKKF----PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK--------SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhC----CccchhHHhccchhhcccchHHHHHHHHHHhccCcc--------cchhHHHHHHHHhhhhhHHHHH
Confidence 3444555544 345566666666666666666666666666653221 1256666666666666666666
Q ss_pred HHHHHHHHH
Q 017388 296 PYCQKAISV 304 (372)
Q Consensus 296 ~~~ekAl~i 304 (372)
.+|+.|+.+
T Consensus 96 Kcy~nAl~~ 104 (700)
T KOG1156|consen 96 KCYRNALKI 104 (700)
T ss_pred HHHHHHHhc
Confidence 666666643
No 229
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=92.97 E-value=0.81 Score=35.96 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHHhh
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~-Ge~~pe~A~~y~~yG~ALl~~a 122 (372)
..|..|+.+|..+-..|+|.+|+.+|.+|++.+.... ++..+..-.+|...=.-++..+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RA 63 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRA 63 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999999998744 7888888888776666666554
No 230
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=92.92 E-value=0.3 Score=49.04 Aligned_cols=85 Identities=13% Similarity=0.064 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCC
Q 017388 211 AWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK 290 (372)
Q Consensus 211 Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~ 290 (372)
|.-.|--|+.-|.......+..-.+++.-|.+|+..|+-.-|+.++.+.|.+..... -+-.+.|.++..+|+
T Consensus 50 a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~--------~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM--------AARIQRGVVLLKQGE 121 (504)
T ss_pred HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH--------HHHHHhchhhhhccc
Confidence 334456677778777776788889999999999999999999999999999986554 667889999999999
Q ss_pred chHHHHHHHHHHH
Q 017388 291 PQEAIPYCQKAIS 303 (372)
Q Consensus 291 ~~eAi~~~ekAl~ 303 (372)
++.|..-|.+.|.
T Consensus 122 le~A~~DF~~vl~ 134 (504)
T KOG0624|consen 122 LEQAEADFDQVLQ 134 (504)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998773
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.75 E-value=5.1 Score=34.10 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD-SRHIAELNF 279 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~-~r~iAe~~~ 279 (372)
+++..|...+..+..+ .|.--.+|..|-.++...|++..|+..|+++.....+-+|.. ++.+-..|-
T Consensus 76 ~~~~~a~~~~~~~l~~-------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~ 143 (146)
T PF03704_consen 76 GDYEEALRLLQRALAL-------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYR 143 (146)
T ss_dssp T-HHHHHHHHHHHHHH-------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHH
Confidence 3566665544444433 344567899999999999999999999999999999877754 444544443
No 232
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=92.75 E-value=0.61 Score=47.29 Aligned_cols=66 Identities=21% Similarity=0.180 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
+.-...+..||..++..+.|.+|-.+|+.||+.+.. +..|.-||.+|...|+...|-..++.++-.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s---------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS---------ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC---------hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 445688999999999999999999999999998764 577888999999999999999999999833
No 233
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=92.64 E-value=1.8 Score=42.38 Aligned_cols=89 Identities=22% Similarity=0.152 Sum_probs=59.8
Q ss_pred ChHHHHHHHH-------HHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017388 206 SDLDLAWKML-------DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 278 (372)
Q Consensus 206 ~dl~~Awe~L-------e~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~ 278 (372)
-.+..||=.| ..|.-||+...........+++.++.+++.+|+|++|...+++||... +.-.+++
T Consensus 167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--------~~~~d~L 238 (290)
T PF04733_consen 167 TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--------PNDPDTL 238 (290)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--------cCCHHHH
Confidence 4566677443 556677777554334567788899999999999999999998887532 3336789
Q ss_pred HHHHHHHHhCCCchH-HHHHHHHHH
Q 017388 279 FRICLCLEIGSKPQE-AIPYCQKAI 302 (372)
Q Consensus 279 ~~Lg~a~~~~~~~~e-Ai~~~ekAl 302 (372)
.|+..+....|+..+ +-+++++..
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHH
Confidence 999999999998744 444444433
No 234
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.57 E-value=0.16 Score=51.90 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 236 LSALAEVALEREDIETSLSDYQKALTILE-RMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 236 ~~~LGev~~e~~~y~~Al~~y~~AL~I~~-~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
...|-.|++-.|+|..|+..+.- +++.+ .++..--.--..+||.+|.||.++++|.+|+..|...|-.+.+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888877653 22222 2333333345678999999999999999999999998865543
No 235
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=92.37 E-value=0.47 Score=50.20 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHhCCCch
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETS-LSDYQKALTILERMVE-PDSRHIAELNFRICLCLEIGSKPQ 292 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~A-l~~y~~AL~I~~~l~~-~~~r~iAe~~~~Lg~a~~~~~~~~ 292 (372)
+..|+.+|++.....|..|.+|-.|+.++.-...|... -..+.++.....+... +..+..+.+|.-+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 45777777777776788899999888887666444310 0122222322222111 112233578999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 017388 293 EAIPYCQKAISVCKS 307 (372)
Q Consensus 293 eAi~~~ekAl~i~~~ 307 (372)
+|..+|++|+.+-..
T Consensus 438 ~A~~~l~rAl~L~ps 452 (517)
T PRK10153 438 EAYQAINKAIDLEMS 452 (517)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999988654
No 236
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=92.21 E-value=1.5 Score=33.69 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHHhh
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~-Ge~~pe~A~~y~~yG~ALl~~a 122 (372)
+..|..|+..|...-..|+|++|+.+|..|++.+.... .+..|..-..+...-+-++..+
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~Ra 63 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999988755 4556666666666666665554
No 237
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=92.18 E-value=1.5 Score=33.73 Aligned_cols=61 Identities=26% Similarity=0.233 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHHhh
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~-Ge~~pe~A~~y~~yG~ALl~~a 122 (372)
.+..|..|+.+|..+-..|+|.+|+.+|..|++.+.... -+..|..-..+..--+-++..+
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~ra 65 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRA 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999988754 3555666666666555555443
No 238
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.05 E-value=3.8 Score=43.00 Aligned_cols=141 Identities=17% Similarity=0.162 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCC
Q 017388 65 FADELMEKGTNALKES--DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~g--dy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~ 142 (372)
-+..|++.+-.+...| +...++.|++-.+...... .--|...+.+|..|+..-
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~-----~veart~LqLg~lL~~yT-------------------- 60 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISF-----LVEARTHLQLGALLLRYT-------------------- 60 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChH-----HHHHHHHHHHHHHHHHHh--------------------
Confidence 4778999999999999 9999999999988774211 134667888898888550
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 017388 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 222 (372)
Q Consensus 143 ~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ 222 (372)
.++++|...|+.|..|.
T Consensus 61 ---------------------------------------------------------------~N~elAksHLekA~~i~ 77 (629)
T KOG2300|consen 61 ---------------------------------------------------------------KNVELAKSHLEKAWLIS 77 (629)
T ss_pred ---------------------------------------------------------------ccHHHHHHHHHHHHHHH
Confidence 26778888888888887
Q ss_pred HHhcCCCccHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHH
Q 017388 223 EKHWGDSMEKVDILSALAEVALERE-DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 297 (372)
Q Consensus 223 ek~~~~~~~~A~~~~~LGev~~e~~-~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~ 297 (372)
+..+.-..-.-+++..|+..|+... .|+.|...+++|+.+-+...- ---..+++|+..+....+|.-|++.
T Consensus 78 ~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~----wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 78 KSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY----WSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred cccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch----hhHHHHHHHHHHHhhhccchhHHHH
Confidence 7665432234678889999998888 999999999999999876431 1235678899999999999888776
No 239
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.87 E-value=11 Score=39.52 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=79.8
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcC--cccCCCCccCCCCCCCCCccccccccC
Q 017388 77 LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGSDKDDSVKNAVN 154 (372)
Q Consensus 77 ~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~--vLg~~~~~~~e~~~~~~~d~~~~~~~~ 154 (372)
+...|++.+...|+++|+|. .-.+-..|.+++.|+.-.+..-....+ .||++.+...- +
T Consensus 377 le~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~-------- 437 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-------D-------- 437 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-------h--------
Confidence 34689999999999999974 334567888888888877754221111 34432211000 0
Q ss_pred CCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCCccHHH
Q 017388 155 GESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVD 234 (372)
Q Consensus 155 ~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~ 234 (372)
+.. + -.=+|++.+..++.+|.+|+|.+.-.|.-..
T Consensus 438 ----------------KlF---------k--------------------~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 438 ----------------KLF---------K--------------------GYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred ----------------hHH---------H--------------------HHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 000 0 0126778888899999999999988788778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017388 235 ILSALAEVALEREDIETSLSDYQKAL 260 (372)
Q Consensus 235 ~~~~LGev~~e~~~y~~Al~~y~~AL 260 (372)
++...|+.-..+|+.+.|...|.-|+
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 88888887777777777666665443
No 240
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.80 E-value=0.14 Score=53.02 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~ 144 (372)
.|.++-+.++.++..++|+.|+++|++|+++ +|.||..|-+=..+.+.+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~----------------------- 51 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKV----------------------- 51 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheee-----------------------
Confidence 4667778999999999999999999999999 788887765544333322
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 017388 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 224 (372)
Q Consensus 145 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek 224 (372)
++|.-|..=+..
T Consensus 52 -------------------------------------------------------------e~~~~Al~Da~k------- 63 (476)
T KOG0376|consen 52 -------------------------------------------------------------ESFGGALHDALK------- 63 (476)
T ss_pred -------------------------------------------------------------chhhhHHHHHHh-------
Confidence 122222111111
Q ss_pred hcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 225 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 225 ~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
.....+..+.+|..-|...+..+.|-+|+.+|++...+.+
T Consensus 64 aie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 64 AIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAP 103 (476)
T ss_pred hhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCc
Confidence 1223467899999999999999999999999998877654
No 241
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.75 E-value=2.5 Score=40.09 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=73.6
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017388 205 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 284 (372)
Q Consensus 205 ~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a 284 (372)
.+.-....+.|..|...|.+... .-....+...||.-|+..|+|+.|+..|+.++...++- .=...+..++-.|-.|
T Consensus 151 ~~hs~~iI~lL~~A~~~f~~~~~-~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~C 227 (247)
T PF11817_consen 151 VDHSKLIIELLEKAYEQFKKYGQ-NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLEC 227 (247)
T ss_pred cchHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHH
Confidence 46777889999999999988754 23456788899999999999999999999997776531 1235678889999999
Q ss_pred HHhCCCchHHHHHH
Q 017388 285 LEIGSKPQEAIPYC 298 (372)
Q Consensus 285 ~~~~~~~~eAi~~~ 298 (372)
+...++.+..+.+.
T Consensus 228 a~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 228 AKRLGDVEDYLTTS 241 (247)
T ss_pred HHHhCCHHHHHHHH
Confidence 99999988776654
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.68 E-value=5.6 Score=41.55 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
++++.|.+.|+.|...-.... .-..-|+.-||.+++-+.+|++|..+|.+.++. ....-|.-+|..|.||
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~---Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWK---QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SKWSKAFYAYLAAACL 350 (468)
T ss_pred cCHHHHHHHHHHhccchhhHH---hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHH
Confidence 466677777765552111110 113467999999999999999999999888774 2334577889999999
Q ss_pred HhCCCchHHHHHHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i~~ 306 (372)
...++...+-.+-++|..+++
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HhhccchhhhhhHHHHHHHHH
Confidence 999999444444444444443
No 243
>PLN03077 Protein ECB2; Provisional
Probab=91.48 E-value=6.5 Score=43.77 Aligned_cols=88 Identities=6% Similarity=-0.002 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHH------------H------------
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKAL------------T------------ 261 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL------------~------------ 261 (372)
+.++.||.+|+..+..|. ..|. ..+|..|..++...|++++|...+++.- .
T Consensus 603 g~v~ea~~~f~~M~~~~g----i~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYS----ITPN-LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred ChHHHHHHHHHHHHHHhC----CCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 466677776665553332 1222 3678888888888888888888877630 0
Q ss_pred -HHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHH
Q 017388 262 -ILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (372)
Q Consensus 262 -I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~e 299 (372)
..++++. -.|.-+..|..|+.+|...|++++|....+
T Consensus 678 ~~a~~l~~-l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 678 LAAQHIFE-LDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred HHHHHHHh-hCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 0001110 012223456667777777787777655543
No 244
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=91.23 E-value=1.9 Score=41.34 Aligned_cols=79 Identities=23% Similarity=0.239 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHhCCCchHHHHHHHHHHHHHHH
Q 017388 232 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICL-CLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~---y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~-a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
.++.|.-|+++.....+ -+.|...|++|+.+....++|.||.---...|.++ -|...++.++|+..-++|..-.-.
T Consensus 124 KGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~ 203 (244)
T smart00101 124 KGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 203 (244)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 57888889998655444 46999999999999998889999863333334443 345678888888766666655444
Q ss_pred HHH
Q 017388 308 RVQ 310 (372)
Q Consensus 308 rl~ 310 (372)
.+.
T Consensus 204 ~ld 206 (244)
T smart00101 204 ELD 206 (244)
T ss_pred Hhh
Confidence 433
No 245
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.21 E-value=2.1 Score=49.73 Aligned_cols=84 Identities=11% Similarity=0.054 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCch
Q 017388 213 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 292 (372)
Q Consensus 213 e~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~ 292 (372)
+++++|.+++. --.+|..|..||...+.|+.|.+.|+.-++=..+. -..|..+|..+.++.+-+
T Consensus 1518 kVFeRAcqycd--------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~--------~~vW~~y~~fLl~~ne~~ 1581 (1710)
T KOG1070|consen 1518 KVFERACQYCD--------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT--------RKVWIMYADFLLRQNEAE 1581 (1710)
T ss_pred HHHHHHHHhcc--------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch--------hhHHHHHHHHHhcccHHH
Confidence 45666666543 34578999999999999999999999887766533 378889999999999989
Q ss_pred HHHHHHHHHHHHHHH--HHHHH
Q 017388 293 EAIPYCQKAISVCKS--RVQRL 312 (372)
Q Consensus 293 eAi~~~ekAl~i~~~--rl~~l 312 (372)
.|....++||..+.+ +++-+
T Consensus 1582 aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred HHHHHHHHHHhhcchhhhHHHH
Confidence 999999999998877 44444
No 246
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=91.21 E-value=9.8 Score=35.53 Aligned_cols=63 Identities=13% Similarity=0.068 Sum_probs=47.3
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekA 301 (372)
-...+.+..+|.++.-+|+|.+|...|+.++....-. -+.+|| +.-+..+|+..+|-..|..-
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-------~ar~~Y--~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-------QARIYY--AEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-------HHHHHH--HHHHHHhcchhHHHHHHHHH
Confidence 3467789999999999999999999999999876432 244554 56667788877776655443
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.07 E-value=1.4 Score=38.78 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
-+..+..-|.-.+..|+|..|+..|+....= + |-.+..-.+.+.|+-+|...++|++|+..+++=|.+..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r----y-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR----Y-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----C-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3567888899999999999998888754332 2 23455568889999999999999999999998887653
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.03 E-value=15 Score=35.35 Aligned_cols=90 Identities=12% Similarity=0.049 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHhcCCCCh------
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERED--------IETSLSDYQKALTILERMVEPDSR------ 272 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~--------y~~Al~~y~~AL~I~~~l~~~~~r------ 272 (372)
++.+|.-+++.-+..| ..++++.-++...|..+...=+ -.+|+..|+..|.= +| ++|
T Consensus 86 ~y~~A~~~~drFi~ly----P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r----yP-nS~Ya~dA~ 156 (254)
T COG4105 86 EYDLALAYIDRFIRLY----PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR----YP-NSRYAPDAK 156 (254)
T ss_pred cHHHHHHHHHHHHHhC----CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH----CC-CCcchhhHH
Confidence 5666655555433333 3357788888888887655422 23444444444332 22 222
Q ss_pred --------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 273 --------HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 273 --------~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
.+|.--+.+|.-|.+.+.+-.|+..|+..++-+
T Consensus 157 ~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y 197 (254)
T COG4105 157 ARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY 197 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc
Confidence 455666678888999999988888888777543
No 249
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.93 E-value=0.85 Score=33.30 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 276 ELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 276 e~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
+++|.|++++.+.|+|..|..+++.+|.+-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999885
No 250
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=90.90 E-value=2.4 Score=45.95 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=54.3
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017388 205 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 284 (372)
Q Consensus 205 ~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a 284 (372)
.++.+.|..+|+.|+.+| +..-..|+.||.|+-..++.+.|..-|..-++..... ...|..|+..
T Consensus 664 ld~~eeA~rllEe~lk~f-------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~--------ipLWllLakl 728 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSF-------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS--------IPLWLLLAKL 728 (913)
T ss_pred hhhHHHHHHHHHHHHHhC-------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC--------chHHHHHHHH
Confidence 345666666666666655 4567789999999999999999999999877665432 2344455555
Q ss_pred HHhCCCchHHHHHHHHH
Q 017388 285 LEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 285 ~~~~~~~~eAi~~~ekA 301 (372)
-...+..-.|...+.++
T Consensus 729 eEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHhcchhhHHHHHHHH
Confidence 55555554554444443
No 251
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.62 E-value=2.1 Score=38.71 Aligned_cols=94 Identities=21% Similarity=0.119 Sum_probs=69.4
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017388 205 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 284 (372)
Q Consensus 205 ~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a 284 (372)
.||++.|.+.|..+|.-+ ...-...+.++++-.|.+..++|.....+..+|-.+....- +.-.-....---|+.
T Consensus 49 ~Gd~~~A~k~y~~~~~~~----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~--d~~~~nrlk~~~gL~ 122 (177)
T PF10602_consen 49 IGDLEEALKAYSRARDYC----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG--DWERRNRLKVYEGLA 122 (177)
T ss_pred hhhHHHHHHHHHHHhhhc----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHH
Confidence 468888888777766522 22345899999999999999999999999999999998732 222223334446777
Q ss_pred HHhCCCchHHHHHHHHHHHH
Q 017388 285 LEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 285 ~~~~~~~~eAi~~~ekAl~i 304 (372)
+...++|..|...|-.++.-
T Consensus 123 ~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 123 NLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHhchHHHHHHHHHccCcC
Confidence 77789999999988655443
No 252
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=89.99 E-value=21 Score=35.24 Aligned_cols=37 Identities=27% Similarity=0.150 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Q 017388 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 309 (372)
Q Consensus 273 ~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl 309 (372)
..|.+||.+|..+...+++.+|+.+++.|+..++...
T Consensus 249 ~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~ 285 (345)
T cd09034 249 FKALAYYYHGLKLDEANKIGEAIARLQAALELLKESE 285 (345)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999998766544
No 253
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.87 E-value=5.6 Score=40.39 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHH
Q 017388 236 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 296 (372)
Q Consensus 236 ~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~ 296 (372)
...|+.|+.-+-.|.+||..|++.|. ++|..--..-.+++||..+.-|+-+-+
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 34445555555555555555555443 444444556678888888877765543
No 254
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.85 E-value=0.15 Score=52.65 Aligned_cols=85 Identities=16% Similarity=0.050 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA 294 (372)
++.|...|.|.....+.-|..+.+-+-.++..++|..|+.|+.+|+++- |..+.+|+..|.+....++|.+|
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--------P~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--------PTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--------chhhheeeeccHHHHhHHHHHHH
Confidence 5556666666666666777788888899999999999999999999885 55679999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 017388 295 IPYCQKAISVCKS 307 (372)
Q Consensus 295 i~~~ekAl~i~~~ 307 (372)
+..|++...+...
T Consensus 92 ~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 92 LLDLEKVKKLAPN 104 (476)
T ss_pred HHHHHHhhhcCcC
Confidence 9999987766544
No 255
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=89.50 E-value=16 Score=37.33 Aligned_cols=74 Identities=14% Similarity=-0.031 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---------HhcCC--------------CChhHHHHHHHHHHHHHhCC
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILE---------RMVEP--------------DSRHIAELNFRICLCLEIGS 289 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~---------~l~~~--------------~~r~iAe~~~~Lg~a~~~~~ 289 (372)
..+-..++.-+.++|+++.|.+..+.+|+-.- .+.+. .|+.-+..|+-||..|...+
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~ 342 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK 342 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh
Confidence 34455678888999999999998888875321 11111 24555688999999999999
Q ss_pred CchHHHHHHHHHHHHHH
Q 017388 290 KPQEAIPYCQKAISVCK 306 (372)
Q Consensus 290 ~~~eAi~~~ekAl~i~~ 306 (372)
.|.+|-.+|+.||....
T Consensus 343 ~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 343 LWGKASEALEAALKLRP 359 (400)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999987653
No 256
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.90 E-value=4.1 Score=31.97 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHH
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQ 113 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~-Ge~~pe~A~~y~~ 113 (372)
..|..+..++..+-..|+|.+|+.||++|.+++.+.. +.....+...|..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 3578889999999999999999999999999988764 4444444444433
No 257
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.83 E-value=2.8 Score=32.91 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCCh
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELAL 105 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~p 105 (372)
.+++|..|+.+|...-..|+|++|..+|..|++.+.....+..+
T Consensus 2 ~l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn~~~k 45 (75)
T cd02680 2 DLERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSNETMD 45 (75)
T ss_pred CHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcChhhH
Confidence 35789999999999999999999999999999998764333333
No 258
>PLN03077 Protein ECB2; Provisional
Probab=88.49 E-value=15 Score=40.87 Aligned_cols=23 Identities=17% Similarity=-0.099 Sum_probs=15.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Q 017388 69 LMEKGTNALKESDYGEAAECFSR 91 (372)
Q Consensus 69 L~~~G~~~~~~gdy~eAv~~~~~ 91 (372)
+..+-..|.+.|++++|..+|.+
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHh
Confidence 34455566777777777777765
No 259
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.35 E-value=0.55 Score=28.79 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQ 257 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~ 257 (372)
.++..||.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 478899999999999999998876
No 260
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=88.34 E-value=4 Score=31.89 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHH
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSH-YGELALECVNAYYQYGRALL 119 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~-~Ge~~pe~A~~y~~yG~ALl 119 (372)
+..|..|+.+|...-..|+|.+|..+|..+++.+... -++..|..-+.+..-=.-++
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl 60 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYL 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999998874 47877776666554333333
No 261
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=88.29 E-value=1.9 Score=40.13 Aligned_cols=72 Identities=22% Similarity=0.184 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------------------HHHHhcC-CCChhHHHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKALT----------------------------ILERMVE-PDSRHIAELNFRICLC 284 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL~----------------------------I~~~l~~-~~~r~iAe~~~~Lg~a 284 (372)
+-+..||....+.|+|.+|+.+|+++|. ..+.++. +..++.+..|.-+|.+
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 3355666666666666666666666542 1222222 1234567888899999
Q ss_pred HHhCCCchHHHHHHHHHHHHH
Q 017388 285 LEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 285 ~~~~~~~~eAi~~~ekAl~i~ 305 (372)
|.-.|++.+|...|+.+++.+
T Consensus 170 laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhC
Confidence 999999999999999999865
No 262
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.90 E-value=4.2 Score=43.71 Aligned_cols=99 Identities=18% Similarity=0.157 Sum_probs=73.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhc-CC---CccHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHW-GD---SMEKVDILSALAEVAL-EREDIETSLSDYQKALTILERMVEPDSRHIAELNFR 280 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~-~~---~~~~A~~~~~LGev~~-e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~ 280 (372)
+++..-+.+.-+|..+++-.. .. +..-|.++..||.|++ +..|++.|..++.+++.+.++ .+ -...--.+.+-
T Consensus 28 ~~l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~-~~d~k~~~~~l 105 (608)
T PF10345_consen 28 EQLKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HR-LTDLKFRCQFL 105 (608)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cc-hHHHHHHHHHH
Confidence 467777778888887776655 22 2346899999999999 999999999999999999876 11 11112345556
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 281 ICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 281 Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
|+.+|...+... |+.+++++|..++.
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 788888777665 88888888877766
No 263
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.87 E-value=3.6 Score=32.34 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 017388 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (372)
Q Consensus 274 iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~r 308 (372)
-|..+.+.++-+...|+|.+|+.+|+.||+.+-..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 46677888999999999999999999999998553
No 264
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=87.75 E-value=9.4 Score=38.25 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 274 iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
.|.+||..|.++...++|.+||.+++.|+..++.
T Consensus 254 ~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~ 287 (346)
T cd09240 254 HALAEYHQSLVAKAQKKFGEEIARLQHALELIKT 287 (346)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999986544
No 265
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.60 E-value=6.9 Score=34.46 Aligned_cols=83 Identities=13% Similarity=0.146 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH--HH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK--SR 308 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r-~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~--~r 308 (372)
..++.++|+.+...+.+- .|-++-+.|++.++...|| .--++.|-|++.+.+.++|+.|+.|+...|+.-. ..
T Consensus 31 s~~s~f~lAwaLV~S~~~----~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDT----EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hHHHHHHHHHHHHcccch----HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 578899999999988764 4678888888888863332 2458999999999999999999999998887742 23
Q ss_pred HHHHHHHHHh
Q 017388 309 VQRLLNEVKS 318 (372)
Q Consensus 309 l~~l~~~~~~ 318 (372)
...|++.|+.
T Consensus 107 a~~Lk~~ied 116 (149)
T KOG3364|consen 107 ALELKETIED 116 (149)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 266
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.59 E-value=11 Score=40.15 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhC----CCchHHHHHHHHHHH
Q 017388 231 EKVDILSALAEVALERE---DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG----SKPQEAIPYCQKAIS 303 (372)
Q Consensus 231 ~~A~~~~~LGev~~e~~---~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~----~~~~eAi~~~ekAl~ 303 (372)
...++.+.||.++.... ++..|..+|..|..-- -..+.|+||.||... .+...|..+|.+|.+
T Consensus 323 g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----------~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~ 392 (552)
T KOG1550|consen 323 GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----------HILAIYRLALCYELGLGVERNLELAFAYYKKAAE 392 (552)
T ss_pred CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHH
Confidence 45677888888888777 5677777777665432 247888888888776 356788899988877
Q ss_pred HH
Q 017388 304 VC 305 (372)
Q Consensus 304 i~ 305 (372)
.-
T Consensus 393 ~g 394 (552)
T KOG1550|consen 393 KG 394 (552)
T ss_pred cc
Confidence 65
No 267
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.11 E-value=0.63 Score=28.52 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHH
Q 017388 276 ELNFRICLCLEIGSKPQEAIPYCQK 300 (372)
Q Consensus 276 e~~~~Lg~a~~~~~~~~eAi~~~ek 300 (372)
.+++.||.+|...|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5789999999999999999998863
No 268
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.11 E-value=32 Score=37.02 Aligned_cols=96 Identities=21% Similarity=0.147 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
++++|..+|++|+.+.++ .+...-.-.+...|+.++..++... |+...++++...+. ++..+...+--+.++.+++.
T Consensus 75 n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 75 NLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred CHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHh
Confidence 788999999999988877 2222224667778899999988888 99999999998887 22223322222222333323
Q ss_pred hCCCchHHHHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~i~~ 306 (372)
. +++..|+..++....+-.
T Consensus 152 ~-~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 152 H-KDYNAALENLQSIAQLAN 170 (608)
T ss_pred c-ccHHHHHHHHHHHHHHhh
Confidence 3 678888888877666553
No 269
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=86.61 E-value=4 Score=39.47 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchH
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALE-REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 293 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e-~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~e 293 (372)
++.||.+|.+......-.-.+|...|.+-.. .++...|...|+.+|+... .+..+ +..-..-+...++.+.
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~---~~~Y~~~l~~~~d~~~ 88 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDF---WLEYLDFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHH---HHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHH---HHHHHHHHHHhCcHHH
Confidence 5777888877765444456889999999555 7888889999999997653 23333 3333355567789999
Q ss_pred HHHHHHHHHH
Q 017388 294 AIPYCQKAIS 303 (372)
Q Consensus 294 Ai~~~ekAl~ 303 (372)
|...|++++.
T Consensus 89 aR~lfer~i~ 98 (280)
T PF05843_consen 89 ARALFERAIS 98 (280)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 270
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.99 E-value=11 Score=40.86 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
||..++-.++..|..|.+..+..+-.-++-.|.|...-+..-|++|-..|++-+.|++ .|.--.|=.+|.--.+. +
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk---~p~v~diW~tYLtkfi~-r 560 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK---WPNVYDIWNTYLTKFIK-R 560 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC---CccHHHHHHHHHHHHHH-H
Confidence 5556666677888888887776555667777778777777778888888887777653 22223344444444444 3
Q ss_pred hCC-CchHHHHHHHHHHHHH
Q 017388 287 IGS-KPQEAIPYCQKAISVC 305 (372)
Q Consensus 287 ~~~-~~~eAi~~~ekAl~i~ 305 (372)
+.| +++-|...|++||+.|
T Consensus 561 ygg~klEraRdLFEqaL~~C 580 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGC 580 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcC
Confidence 333 6677888888887654
No 271
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.75 E-value=0.29 Score=48.89 Aligned_cols=81 Identities=15% Similarity=-0.037 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHH
Q 017388 216 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 295 (372)
Q Consensus 216 e~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi 295 (372)
+.|...|-+.....+..|..|..-|.|++.+.+...|+.+|..|+.|-. ..|.-|--.|.+...++++.+|.
T Consensus 131 ~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~--------Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 131 DTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP--------DSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCc--------ccccccchhhHHHHHhhchHHHH
Confidence 3333344333344577899999999999999999999999999998854 44677778899999999999999
Q ss_pred HHHHHHHHH
Q 017388 296 PYCQKAISV 304 (372)
Q Consensus 296 ~~~ekAl~i 304 (372)
..+..|+.+
T Consensus 203 ~dl~~a~kl 211 (377)
T KOG1308|consen 203 HDLALACKL 211 (377)
T ss_pred HHHHHHHhc
Confidence 999988754
No 272
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=85.51 E-value=1.6 Score=42.75 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCch
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALERE--DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 292 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~--~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~ 292 (372)
+++|+..+.+...-..+-.-+....+.|.+..| +|.+|.-.|+.... .+| ....++..++.|+..+|+|+
T Consensus 147 ~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~~----~t~~~lng~A~~~l~~~~~~ 218 (290)
T PF04733_consen 147 PDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KFG----STPKLLNGLAVCHLQLGHYE 218 (290)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS------SHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----ccC----CCHHHHHHHHHHHHHhCCHH
Confidence 366666666554322333444455555666655 57777777776321 222 23567889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017388 293 EAIPYCQKAISVCKSRVQRLLNEVK 317 (372)
Q Consensus 293 eAi~~~ekAl~i~~~rl~~l~~~~~ 317 (372)
+|...+++|+..-.....-|-+.+-
T Consensus 219 eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 219 EAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999999998766555555555443
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.50 E-value=28 Score=33.57 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHh------------------
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALT-ILERM------------------ 266 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~-I~~~l------------------ 266 (372)
+.++.|...|..+....... ......+...-+.+....|+..+|+..++..+. .....
T Consensus 160 g~~~~A~~~l~~~~~~~~~~---~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSS---ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred CCcHHHHHHHHHHhccCCcc---cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence 45666655555444322111 111456677778888899999999999988888 22222
Q ss_pred -------cCCCChhHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHHHHHHH
Q 017388 267 -------VEPDSRHIAELNFRICLCLEIG------SKPQEAIPYCQKAISVCKSRVQ 310 (372)
Q Consensus 267 -------~~~~~r~iAe~~~~Lg~a~~~~------~~~~eAi~~~ekAl~i~~~rl~ 310 (372)
.....+..|.+++.+|.-.... +.+++++.+|++|+.+......
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 1123467899999999999888 8899999999999999775443
No 274
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.36 E-value=1.9 Score=46.16 Aligned_cols=62 Identities=13% Similarity=-0.018 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 235 ~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
...+|+.+.+..+-.-+|-..+.++|.|.-.- ..+||.+|.+|....+.+.||++|++|+..
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~se--------pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSE--------PLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccC--------chHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 36688888888888889999999999987221 278999999999999999999999999964
No 275
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.35 E-value=57 Score=36.41 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQ------KALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~------~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
..+.|..-|+++-...+|+.|+++|+ +|+.+.+-.||..- ...--..|.-+...|+++.|+.||-.|-.++
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~ev---v~lee~wg~hl~~~~q~daainhfiea~~~~ 736 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEV---VKLEEAWGDHLEQIGQLDAAINHFIEANCLI 736 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHH---hhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH
Confidence 35668889999999999999999986 57777777776543 3334456888999999999999998877666
Q ss_pred HHH
Q 017388 306 KSR 308 (372)
Q Consensus 306 ~~r 308 (372)
++.
T Consensus 737 kai 739 (1636)
T KOG3616|consen 737 KAI 739 (1636)
T ss_pred HHH
Confidence 553
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.21 E-value=5.1 Score=42.15 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=66.7
Q ss_pred ChHHHHHHHHH-HHH-HHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC------------
Q 017388 206 SDLDLAWKMLD-VAR-AIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS------------ 271 (372)
Q Consensus 206 ~dl~~Awe~Le-~Ar-~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~------------ 271 (372)
.-++.||.--+ .+| ..-.+.+.-.++-|++|..|++= +.....+|...|+++++.-+..++.+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 45788884311 111 11122233345678889888873 234578899999999988887766531
Q ss_pred -----hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 272 -----RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 272 -----r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
+...-+-++|++|....|+.++||++|+.-+..+
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~ 289 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF 289 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 1235666889999999999999999999887543
No 277
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.12 E-value=2.6 Score=33.11 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Q 017388 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 309 (372)
Q Consensus 274 iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl 309 (372)
.|..+...+.-+...|++.+|+.+|+.||+++-.-+
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 577888899999999999999999999999876543
No 278
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=85.07 E-value=11 Score=35.96 Aligned_cols=113 Identities=19% Similarity=0.088 Sum_probs=72.3
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCC-----CccHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 017388 204 DESDLDLAWKMLDVARAIAEKHWGD-----SMEKVDILSALAEVALERED-IETSLSDYQKALTILERMVEPDSRHIAEL 277 (372)
Q Consensus 204 d~~dl~~Awe~Le~Ar~I~ek~~~~-----~~~~A~~~~~LGev~~e~~~-y~~Al~~y~~AL~I~~~l~~~~~r~iAe~ 277 (372)
|.++|+.|+++.+.|+.-=...++. .--+|+-...-+......|+ |+-+ .++....|. .-..-.....|..
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~--~~~~~~~l~-~~~dmpd~vrAKl 171 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY--FLRVFLDLT-TEWDMPDEVRAKL 171 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH--HHHHHHHHH-hcCCCChHHHHHH
Confidence 5689999977666665432211211 12256666666777777776 2222 233333343 3334455667888
Q ss_pred HHHHHHHHH---------hCCCchHHHHHHHHHHHH-----HHHHHHHHHHHHHhh
Q 017388 278 NFRICLCLE---------IGSKPQEAIPYCQKAISV-----CKSRVQRLLNEVKSL 319 (372)
Q Consensus 278 ~~~Lg~a~~---------~~~~~~eAi~~~ekAl~i-----~~~rl~~l~~~~~~~ 319 (372)
|--+|.++. ..+.+..|+.++++|+.+ .+..|.+|..+|+..
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhc
Confidence 888999883 456788999999999999 577788888877754
No 279
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=85.05 E-value=0.68 Score=48.04 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCC
Q 017388 215 LDVARAIAEKHWGD-SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 289 (372)
Q Consensus 215 Le~Ar~I~ek~~~~-~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~ 289 (372)
--+|+.|.++.+++ +++++....--|-||.++|+|+.-+...+-||.++++++.|-+|.++.++.+.+-.|.+.=
T Consensus 318 RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~mL 393 (615)
T KOG0508|consen 318 RMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFML 393 (615)
T ss_pred HHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHh
Confidence 34678888998884 5777776777899999999999999999999999999999999999999988888776643
No 280
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.99 E-value=1.8 Score=43.80 Aligned_cols=83 Identities=20% Similarity=0.160 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
.||.-|..+|+.++.. + ..+--++...+|-.+...|+|.+|+..|+-... +.. --++...+|+.|+
T Consensus 36 rDytGAislLefk~~~-----~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~--~~~------~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNL-----D-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN--KDD------APAELGVNLACCK 101 (557)
T ss_pred ccchhHHHHHHHhhcc-----c-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc--cCC------CCcccchhHHHHH
Confidence 4677788888777622 2 122356677888899999999999999986544 211 2368889999999
Q ss_pred HhCCCchHHHHHHHHHH
Q 017388 286 EIGSKPQEAIPYCQKAI 302 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl 302 (372)
.+.|.|.+|.....+|-
T Consensus 102 FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAP 118 (557)
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 99999999988777653
No 281
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=84.87 E-value=23 Score=35.47 Aligned_cols=36 Identities=31% Similarity=0.277 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 017388 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (372)
Q Consensus 273 ~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~r 308 (372)
--|.+||..|..+...++|.+||.+++.|...++..
T Consensus 242 f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a 277 (348)
T cd09242 242 YKSLAAYYHALALEAAGKYGEAIAYLTQAESILKEA 277 (348)
T ss_pred HHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999999876554
No 282
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=84.66 E-value=2.7 Score=46.59 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhC
Q 017388 209 DLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 288 (372)
Q Consensus 209 ~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~ 288 (372)
..-+-||+.|+.||.+- .-|..|-..|+..|.+++|+ +|.+.. +.-++-.+||+.+.-++..
T Consensus 810 AieLgMlEeA~~lYr~c--------kR~DLlNKlyQs~g~w~eA~-------eiAE~~---DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQC--------KRYDLLNKLYQSQGMWSEAF-------EIAETK---DRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHhhHHHHHHHHHHH--------HHHHHHHHHHHhcccHHHHH-------HHHhhc---cceehhhhHHHHHHHHHhh
Confidence 33344677777777553 23555666666666555544 444322 2234678999999999999
Q ss_pred CCchHHHHHHHHH
Q 017388 289 SKPQEAIPYCQKA 301 (372)
Q Consensus 289 ~~~~eAi~~~ekA 301 (372)
++++.|++||+++
T Consensus 872 ~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 872 RDIEAALEYYEKA 884 (1416)
T ss_pred ccHHHHHHHHHhc
Confidence 9999999999995
No 283
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.10 E-value=3.6 Score=39.76 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHhCCCchHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD----------SRHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~----------~r~iAe~~~~Lg~a~~~~~~~~eAi~~~e 299 (372)
+....++.--|.-+...|+|.+|...|+.|+-+.+.+.-.+ .+.+-..+.|.+.|+...++|=++++|+.
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 44567788889999999999999999999999988875432 24677788999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 017388 300 KAISVCKSRVQRL 312 (372)
Q Consensus 300 kAl~i~~~rl~~l 312 (372)
..|.........+
T Consensus 255 eiL~~~~~nvKA~ 267 (329)
T KOG0545|consen 255 EILRHHPGNVKAY 267 (329)
T ss_pred HHHhcCCchHHHH
Confidence 8776544333333
No 284
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=84.05 E-value=27 Score=35.04 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 273 ~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
-.|.+||..|......++|.++|.+++.|+..++.
T Consensus 235 f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~ 269 (355)
T cd09241 235 FKAAAHYRMALVALEKSKYGEEVARLRVALAACKE 269 (355)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 36888999999999999999999999999986543
No 285
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=83.99 E-value=3.5 Score=44.59 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCC----CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----HhcCCCChhHHHHHHHHHHHHH
Q 017388 215 LDVARAIAEKHWGD----SMEKVDILSALAEVALEREDIETSLSDYQKALTILE----RMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 215 Le~Ar~I~ek~~~~----~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~----~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
|+.||+||++...- -..+|.+|..-|+.-+...+|+.|+...+.|+.+=. ..+...+|--+..|..| .++.
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl-kiWs 481 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL-KIWS 481 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH-HHHH
Confidence 78889999987652 246899999999999999999999999999986533 23444556666666555 4566
Q ss_pred hCCCchHHHHHHHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAISVCKSRV 309 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~i~~~rl 309 (372)
+.-++++++--|++.-.++...|
T Consensus 482 ~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 66667777777777666655543
No 286
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.55 E-value=5.2 Score=42.10 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 231 ~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
+--.++.++|..++..|+.-.|..+|.++...+... ...|.+|+-|-
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--------PrlWLRlAEcC 379 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--------PRLWLRLAECC 379 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--------cHHHHHHHHHH
Confidence 356789999999999999999999999999887643 24566666554
No 287
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=83.25 E-value=16 Score=36.58 Aligned_cols=37 Identities=24% Similarity=0.134 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Q 017388 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 309 (372)
Q Consensus 273 ~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl 309 (372)
..|.+||..|..+...++|.+|+.+++.|...++.-.
T Consensus 237 ~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~ 273 (377)
T PF03097_consen 237 YRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEAS 273 (377)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999998877654
No 288
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=82.54 E-value=29 Score=29.36 Aligned_cols=46 Identities=15% Similarity=0.023 Sum_probs=36.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 017388 72 KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (372)
Q Consensus 72 ~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~a 122 (372)
++..++..|++-+|.++....+.. +|+.. .+..+++.=|..++.++
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~----h~~~~-~~~~lh~~QG~if~~lA 47 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR----HGEDE-SSWLLHRLQGTIFYKLA 47 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH----ccCCC-chHHHHHHHhHHHHHHH
Confidence 467889999999999998888775 55533 33478888899999886
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.44 E-value=12 Score=34.91 Aligned_cols=65 Identities=20% Similarity=0.101 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
.+-+-.+||.|.+.++.|+.|+..+.. .. ++--.+..-.-.|.+|...|+-.+|...|++|+.+.
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t-------~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDT-------IK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhc-------cc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 455677999999999999988765542 22 222234445668999999999999999999999874
No 290
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.32 E-value=19 Score=35.97 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 273 ~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
..|.+..++|..+...|+|+.|+.-|+.|+.+
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 35788899999999999999999999998864
No 291
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=81.60 E-value=36 Score=37.84 Aligned_cols=80 Identities=19% Similarity=0.124 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcC------CCccHHHHHHHHHH------HHHhcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHH
Q 017388 215 LDVARAIAEKHWG------DSMEKVDILSALAE------VALEREDIETSLSDYQK------ALTILERMVEPDSRHIAE 276 (372)
Q Consensus 215 Le~Ar~I~ek~~~------~~~~~A~~~~~LGe------v~~e~~~y~~Al~~y~~------AL~I~~~l~~~~~r~iAe 276 (372)
+..|+.|.....+ +-+.+|+-|.++|+ ++.+.+.|..||.+|.+ |.++..+..+++. +..
T Consensus 748 w~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~--t~~ 825 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEA--TIS 825 (1636)
T ss_pred hhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchh--HHH
Confidence 3455556554322 23567777777764 57778888889988865 5666666665543 344
Q ss_pred HHHHHHHHHHhCCCchHHHH
Q 017388 277 LNFRICLCLEIGSKPQEAIP 296 (372)
Q Consensus 277 ~~~~Lg~a~~~~~~~~eAi~ 296 (372)
.|..-+.-+...|+|.+|..
T Consensus 826 ~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 826 LYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred HHHHhHHhHHhhcchhhhhh
Confidence 55555555666677644433
No 292
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=81.44 E-value=12 Score=28.83 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 310 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~ 310 (372)
|..+.+-|+-....|+|++|+.+|.+|++.+..-+.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k 41 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALK 41 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 455667778889999999999999999999876543
No 293
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=81.37 E-value=18 Score=29.75 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=49.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017388 239 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKS 318 (372)
Q Consensus 239 LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~l~~~~~~ 318 (372)
+..+......++..+..++.++.=...+- ++ ..+|+.+|.+|-... .++|+.....-++.+..++..+.+.++.
T Consensus 15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~l~-~d----~~vy~~VG~vfv~~~-~~ea~~~Le~~~e~le~~i~~l~~~~~~ 88 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENKKALEELEKLA-DD----AEVYKLVGNVLVKQE-KEEARTELKERLETIELRIKRLERQEED 88 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-Cc----chHHHHhhhHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555566666665555442 22 378999999998854 4888888888888888887777655543
No 294
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.20 E-value=3 Score=33.04 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 273 ~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
..|..+.+.|+.+...|..++|+.+|++++.++..
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~e 40 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEE 40 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999988654
No 295
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.08 E-value=11 Score=37.96 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHHHH-----hcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh----c----------
Q 017388 207 DLDLAWKMLDVARAIAEK-----HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM----V---------- 267 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek-----~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l----~---------- 267 (372)
.++.+...+..+...+.- .+...|-.++++..|++|+..+|++..|....++||-+.... |
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g 88 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG 88 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Confidence 566666666666644311 112247789999999999999999999999999999988842 3
Q ss_pred -------CCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 017388 268 -------EPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (372)
Q Consensus 268 -------~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl 302 (372)
-+++|.+=.++|+....+.+.|-+.-|+++++--+
T Consensus 89 ~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLl 130 (360)
T PF04910_consen 89 NCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLL 130 (360)
T ss_pred ccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 12467778888888999999999888888887655
No 296
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=80.98 E-value=4.9 Score=30.32 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~ 311 (372)
|..+.+.|+-+...|+|.+|+.+|.+|+..+..-+..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~ 41 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKS 41 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 4556778888999999999999999999997766543
No 297
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.63 E-value=27 Score=36.88 Aligned_cols=80 Identities=11% Similarity=-0.013 Sum_probs=58.8
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017388 205 ESDLDLAWKMLDVARAIAEKHWGD---SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 281 (372)
Q Consensus 205 ~~dl~~Awe~Le~Ar~I~ek~~~~---~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~L 281 (372)
.++++.|.+.+-..+..+.+.++. .-..+.+|..||--++..+-|+.|.-+|..|+++..+.- ..|.+..||
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~d-----l~a~~nlnl 410 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESID-----LQAFCNLNL 410 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHH-----HHHHHHHhH
Confidence 467788888888888888887763 234689999999999999999999999999988765431 234444555
Q ss_pred HHHHHhCC
Q 017388 282 CLCLEIGS 289 (372)
Q Consensus 282 g~a~~~~~ 289 (372)
+.+|-+.+
T Consensus 411 Ai~YL~~~ 418 (629)
T KOG2300|consen 411 AISYLRIG 418 (629)
T ss_pred HHHHHHhc
Confidence 55554444
No 298
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=79.28 E-value=21 Score=42.00 Aligned_cols=188 Identities=16% Similarity=0.176 Sum_probs=116.2
Q ss_pred ccCCCCCCCCccCCchhhhHHHHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 017388 44 CNNNCETSGAIADGEREKTVEFADELME-------KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGR 116 (372)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~a~~L~~-------~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ 116 (372)
+-|..|++++ +..-.++.++|-.+.. +-..|-+..+|++|.++|.+- .++|| ..-..|..||.
T Consensus 1503 ~lNlEn~yG~--eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m----~KKF~----q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1503 YLNLENAYGT--EESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLM----LKKFG----QTRKVWIMYAD 1572 (1710)
T ss_pred HHhHHHhhCc--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHhc----chhhHHHHHHH
Confidence 4578888883 2233444566655554 445677778899998877654 45566 34568999999
Q ss_pred HHHHhhhhhcC--cccCCCCccCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCC
Q 017388 117 ALLYKAQEEAD--PLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGND 194 (372)
Q Consensus 117 ALl~~ar~es~--vLg~~~~~~~e~~~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~ 194 (372)
.|+.+-+.+.. +|.++.+... .. +.-
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~lP---------------------------k~------eHv------------------- 1600 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSLP---------------------------KQ------EHV------------------- 1600 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhcc---------------------------hh------hhH-------------------
Confidence 99977543221 4433221100 00 000
Q ss_pred CccccccccCcChH---HHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 017388 195 GENVAEADEDESDL---DLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS 271 (372)
Q Consensus 195 ~e~~~~~~ed~~dl---~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~ 271 (372)
+-..-| +=..---+++|.||+..+...|+.-+.|+.+.+.-+..++..-+...|++++.+.-.
T Consensus 1601 --------~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~------ 1666 (1710)
T KOG1070|consen 1601 --------EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS------ 1666 (1710)
T ss_pred --------HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC------
Confidence 000000 000001378888998888777888999999999999999999999999998877532
Q ss_pred hhHHHHHHHHHHHHHhCCCchHHHHHHH-HHHHHHHH
Q 017388 272 RHIAELNFRICLCLEIGSKPQEAIPYCQ-KAISVCKS 307 (372)
Q Consensus 272 r~iAe~~~~Lg~a~~~~~~~~eAi~~~e-kAl~i~~~ 307 (372)
+.=+.-+|+.=+-|+...--++++++.. +|++-..+
T Consensus 1667 ~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s 1703 (1710)
T KOG1070|consen 1667 IKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVES 1703 (1710)
T ss_pred hhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHH
Confidence 2335667777777877755566666654 35544433
No 299
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=78.61 E-value=74 Score=32.16 Aligned_cols=35 Identities=17% Similarity=0.044 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 273 ~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
--|.+||..|......++|.++|.+++.|+..++.
T Consensus 250 f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~ 284 (361)
T cd09239 250 YASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEE 284 (361)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888999999999999999999999999885433
No 300
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=78.39 E-value=3.5 Score=38.75 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 252 SLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 252 Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
|+.+|.+|+.+.+. .+..|++||+.+...+++=.|+-||-+|+.+
T Consensus 1 A~~~Y~~A~~l~P~--------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPS--------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TT--------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCC--------CCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 78899999999854 4699999999999999999999999999844
No 301
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.39 E-value=13 Score=36.41 Aligned_cols=85 Identities=19% Similarity=0.047 Sum_probs=66.9
Q ss_pred ChHHHHHHH-------HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017388 206 SDLDLAWKM-------LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 278 (372)
Q Consensus 206 ~dl~~Awe~-------Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~ 278 (372)
.-|..||=- +.-|.-||+...+..+..-.+++-++.+++.++||++|...++.||.=..+. .+++
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--------petL 244 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD--------PETL 244 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC--------HHHH
Confidence 346777743 4777889988876556677888999999999999999999999998765433 6899
Q ss_pred HHHHHHHHhCCCchHHHHHH
Q 017388 279 FRICLCLEIGSKPQEAIPYC 298 (372)
Q Consensus 279 ~~Lg~a~~~~~~~~eAi~~~ 298 (372)
-|+-++-...|+..++.+-|
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred HHHHHHHHHhCCChHHHHHH
Confidence 99988888889877765433
No 302
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.18 E-value=81 Score=33.04 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILERMV 267 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~ 267 (372)
-+.|...|-+.+.+|+-++|.+.|+.|...+.++-
T Consensus 267 lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elk 301 (568)
T KOG2561|consen 267 LRLELLQGVVAYHQGQRDEAYEALESAHAKLLELK 301 (568)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHee
Confidence 46788999999999999999999999999888765
No 303
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=78.15 E-value=43 Score=28.67 Aligned_cols=77 Identities=23% Similarity=0.306 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLL 313 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~l~ 313 (372)
..+..|..+.+..-.++.-+....+||.=+..+-. + +..|...|.++-.. ..++++.-.+.-++.++.|+..|+
T Consensus 17 qLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~e-D----~~vYk~VG~llvk~-~k~~~~~eL~er~E~Le~ri~tLe 90 (119)
T COG1382 17 QLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDE-D----APVYKKVGNLLVKV-SKEEAVDELEERKETLELRIKTLE 90 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c----cHHHHHhhhHHhhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777778888888888889888877643 2 47899999999998 558999999888888888888886
Q ss_pred HHH
Q 017388 314 NEV 316 (372)
Q Consensus 314 ~~~ 316 (372)
++.
T Consensus 91 kQe 93 (119)
T COG1382 91 KQE 93 (119)
T ss_pred HHH
Confidence 553
No 304
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.78 E-value=12 Score=29.75 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhc
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA 126 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es 126 (372)
.+...+..|.++|...+..+|+.++..||+.... .++...++-++-.|+.+.|++..
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~ 61 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYRE 61 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999998632 56778888888888888888754
No 305
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=77.77 E-value=10 Score=29.98 Aligned_cols=36 Identities=31% Similarity=0.211 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 017388 236 LSALAEVALEREDIETSLSDYQKALTILERMVEPDS 271 (372)
Q Consensus 236 ~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~ 271 (372)
+.+.|--+=+.|+-++|+.+|++++.+...-+.-..
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 333444445668999999999999999998765433
No 306
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=77.35 E-value=5.7 Score=31.16 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Q 017388 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (372)
Q Consensus 274 iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~ 311 (372)
-|..+.+.|+-+...|+|.+|+.+|.+||+.|..-+..
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~ 42 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKG 42 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 35667778899999999999999999999998776544
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.34 E-value=18 Score=35.34 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
.+.+|..|++.+...++|+.++.++++-+.+..- .=..|..|=.+|...|+...|+.+|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~--------~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPY--------DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc--------chHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 6899999999999999999999999988877543 3377888999999999999999999987765
No 308
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.19 E-value=7.5 Score=25.98 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHH--HHHHH
Q 017388 67 DELMEKGTNALKESDYGEAAECFS--RALEI 95 (372)
Q Consensus 67 ~~L~~~G~~~~~~gdy~eAv~~~~--~Alel 95 (372)
+-+...|..++.+|+|++|+..|+ -++-+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 357789999999999999999966 66654
No 309
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.84 E-value=53 Score=31.17 Aligned_cols=83 Identities=23% Similarity=0.208 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE-------DIETSLSDYQKALTILERMVEPDSRHIAELNF 279 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~-------~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~ 279 (372)
|+..|...|..|-.. ++ ..-+.+...||..+.... ++..|+..|.++-... ...+.+
T Consensus 128 d~~~A~~~~~~Aa~~-----g~-~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----------~~~a~~ 191 (292)
T COG0790 128 DLVKALKYYEKAAKL-----GN-VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----------NPDAQL 191 (292)
T ss_pred CHHHHHHHHHHHHHc-----CC-hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----------CHHHHH
Confidence 566666665555431 11 111555888888888763 2236666666665554 458889
Q ss_pred HHHHHHHhC----CCchHHHHHHHHHHHHH
Q 017388 280 RICLCLEIG----SKPQEAIPYCQKAISVC 305 (372)
Q Consensus 280 ~Lg~a~~~~----~~~~eAi~~~ekAl~i~ 305 (372)
+||.+|... .++.+|+..|++|...-
T Consensus 192 ~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 192 LLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999775 37789999999998754
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.78 E-value=15 Score=34.20 Aligned_cols=74 Identities=18% Similarity=0.112 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcC-CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH
Q 017388 216 DVARAIAEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (372)
Q Consensus 216 e~Ar~I~ek~~~-~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA 294 (372)
+.|+..|.+..+ ..++.+.....||..|. .-+-+.|+..|-++|.+... ++..-.+.+..|+.+|...++++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhh
Confidence 567778877755 35778999999999998 67889999999999998653 3344468899999999999999887
No 311
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.51 E-value=4.6 Score=43.65 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 236 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 236 ~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
+-+-|--+++..+|..|+..|..+|..... ...+++.|....+|+.||-...+.|.|+++++.|-+.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 334566778889999999999999876543 2346778999999999999999999999999998754
No 312
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.62 E-value=62 Score=36.44 Aligned_cols=70 Identities=7% Similarity=-0.052 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
..++..+..+++. ++.+.....+.+.+.-...+..+-. --.++.|+.++...|++++|..........+.
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~-~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLS-RLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3455555555554 8888888998888877655433221 12236999999999999999888777665543
No 313
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=75.37 E-value=1.7e+02 Score=34.29 Aligned_cols=95 Identities=4% Similarity=-0.070 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhcC------CCccHHHHHHHHHHHHHhcC--------------------CHHHHHHHHHHHHHHHH
Q 017388 211 AWKMLDVARAIAEKHWG------DSMEKVDILSALAEVALERE--------------------DIETSLSDYQKALTILE 264 (372)
Q Consensus 211 Awe~Le~Ar~I~ek~~~------~~~~~A~~~~~LGev~~e~~--------------------~y~~Al~~y~~AL~I~~ 264 (372)
--++++.++..|.+... +.+=.+.+..+++.+..... .-.++.....+++.+..
T Consensus 357 i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l 436 (1185)
T PF08626_consen 357 IPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQL 436 (1185)
T ss_pred hhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhh
Confidence 33567888888888752 22335678888888888888 88999999999999988
Q ss_pred HhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 265 RMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 265 ~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
..++..++ ...|..|+.+|...|-.-++.=+.+.++-.+-.
T Consensus 437 ~~l~~~dq--i~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~ 477 (1185)
T PF08626_consen 437 KDLSVEDQ--IRIYSGLASVYGSLGFHRKKAFVLRELAVQLVP 477 (1185)
T ss_pred hhCCHHHH--HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcc
Confidence 76654444 578888999999999877777777777766643
No 314
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.25 E-value=97 Score=31.28 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHhcCCCChhHHHHHHHHHHHHHhCCCc--
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTI-LERMVEPDSRHIAELNFRICLCLEIGSKP-- 291 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I-~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~-- 291 (372)
|+.||.++.=.+.. +---++..|--..+..++|+-=+..++..+.. .+..+ ..+...-|.+++|+.+.++-
T Consensus 123 lE~~KlLlsLdp~~--DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~----~~lPn~a~S~aLA~~~l~~~~~ 196 (360)
T PF04910_consen 123 LEWCKLLLSLDPDE--DPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWL----SLLPNFAFSIALAYFRLEKEES 196 (360)
T ss_pred HHHHHHHHhcCCCC--CcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhh----hhCccHHHHHHHHHHHhcCccc
Confidence 56677776443331 22334455555667778887777777765552 11100 01235668888898888888
Q ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 017388 292 -------------QEAIPYCQKAISVCKSRVQRLLNEV 316 (372)
Q Consensus 292 -------------~eAi~~~ekAl~i~~~rl~~l~~~~ 316 (372)
+.|-...++|+..+...+..|-+++
T Consensus 197 ~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 197 SQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred cccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 8999999999999999999998777
No 315
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=74.44 E-value=99 Score=31.03 Aligned_cols=33 Identities=21% Similarity=0.069 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 273 ~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
.-|.+||..|..+...++|.+||.+++.|...+
T Consensus 245 f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l 277 (353)
T cd09246 245 FRAEALYRAAKDLHEKEDIGEEIARLRAASDAL 277 (353)
T ss_pred HHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHH
Confidence 368889999999999999999999999998743
No 316
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.23 E-value=1.1e+02 Score=31.21 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSRALEI 95 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel 95 (372)
..+.....+++.++..++|..|...|...+..
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34566778899999999999999999998874
No 317
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.16 E-value=7.3 Score=28.40 Aligned_cols=31 Identities=23% Similarity=0.070 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
+|+..||.-+...|+|+.|..+.+.+|++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999999864
No 318
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=73.38 E-value=28 Score=36.23 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 238 ALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 238 ~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
.|...|+.+++-+-|+.+-.+++.+-..+| .-|..-+.|++.+.+|.+|...+--|.=++
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~f--------rnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYF--------RNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777788888888888887766555 567777888888888888887776665444
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.31 E-value=14 Score=34.48 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 300 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ek 300 (372)
-.-+-..|+..+.+.++|+.|+..++.+|..-. |.-.-+.+-.+|+.++...+++++|+.....
T Consensus 88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 88 AVLAALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 445677889999999999999999999986533 4445677888999999999999999887765
No 320
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=73.27 E-value=5.7 Score=33.29 Aligned_cols=81 Identities=16% Similarity=0.318 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh------------------hHHHHHHHHHHHHHhCCCchHHHHHHH
Q 017388 238 ALAEVALEREDIETSLSDYQKALTILERMVEPDSR------------------HIAELNFRICLCLEIGSKPQEAIPYCQ 299 (372)
Q Consensus 238 ~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r------------------~iAe~~~~Lg~a~~~~~~~~eAi~~~e 299 (372)
.+..+......+...+..|+.++.....+-..... ..-.++..||.=|.....+++|+.+++
T Consensus 14 ~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~ 93 (129)
T cd00890 14 QLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLK 93 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHHH
Confidence 34444555566777777788777777776432111 122456778855555567789999998
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 017388 300 KAISVCKSRVQRLLNEVKS 318 (372)
Q Consensus 300 kAl~i~~~rl~~l~~~~~~ 318 (372)
+-++.++.++..+++.+..
T Consensus 94 ~r~~~l~~~~~~l~~~~~~ 112 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEK 112 (129)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888766554
No 321
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=71.98 E-value=10 Score=28.98 Aligned_cols=34 Identities=21% Similarity=0.106 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~r 308 (372)
|..+...|+.+...|++++|+.+|.+|++.+..-
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4455667788888999999999999999987664
No 322
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.68 E-value=15 Score=34.85 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 017388 250 ETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 250 ~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
...|..+.+|+..+++.- ..|........||.-|...|+|++|+.+|+.+...++
T Consensus 155 ~~iI~lL~~A~~~f~~~~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr 209 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYG--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYR 209 (247)
T ss_pred HHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345777778887777654 3788889999999999999999999999999987765
No 323
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.60 E-value=2.6 Score=42.32 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ 121 (372)
-++.|.+.-.++.-++..|.|+.|++.|-+|.++ .|..|.+|-+-|.+++.+
T Consensus 110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl 161 (377)
T KOG1308|consen 110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKL 161 (377)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeec
Confidence 3667889999999999999999999999999998 799999998888888866
No 324
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=71.00 E-value=4.5 Score=38.73 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=57.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017388 242 VALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGE 321 (372)
Q Consensus 242 v~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~l~~~~~~~~~ 321 (372)
...+.++++.|.+.|.++|.+..+. +..|+++|......|+++.|...|++.+++-..-..--.-+|..++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w--------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~ 75 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW--------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGR 75 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh--------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcC
Confidence 3467899999999999999997655 68999999999999999999999999998865544333334444443
No 325
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=70.99 E-value=18 Score=41.24 Aligned_cols=100 Identities=17% Similarity=0.040 Sum_probs=75.0
Q ss_pred cCcChHHHHHHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017388 203 EDESDLDLAWKMLDVARAIAEKHWGDS---MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNF 279 (372)
Q Consensus 203 ed~~dl~~Awe~Le~Ar~I~ek~~~~~---~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~ 279 (372)
-.++|-=+|...++.|...|.|....= .+--.+.+.+|...+++-.-..--..|.+||.....+.+ .+.-.--|.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 556 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPLEYL 556 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCchHHH
Confidence 467888899999999999999986542 233467888888888765444444777888887777753 233335577
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 280 RICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 280 ~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
.-+++|++++.|++-+++|.-|+.-
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 7889999999999999999999853
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.39 E-value=7.9 Score=27.17 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Q 017388 70 MEKGTNALKESDYGEAAECFSRALE 94 (372)
Q Consensus 70 ~~~G~~~~~~gdy~eAv~~~~~Ale 94 (372)
+.+++.|+.+||++.|...+.+.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999885
No 327
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.93 E-value=17 Score=29.24 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------H---HHhhCCCChhHHHHHHHHHHHHH
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEI------------R---VSHYGELALECVNAYYQYGRALL 119 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel------------~---~~~~Ge~~pe~A~~y~~yG~ALl 119 (372)
....+.++..++..|+|++|++.|-+.+.. + -..+|..||-+...--.+..+||
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL~ 90 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLLF 90 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhC
Confidence 456788999999999999999998775533 2 23468888888888888887775
No 328
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=68.89 E-value=48 Score=28.03 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALER----EDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 281 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~----~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~L 281 (372)
+|.-.|+++++.......+. ....-.|...|.|+..+ +|.+-=..++..|++-..+...- +|.-|..+|.|
T Consensus 10 GnhiKAL~iied~i~~h~~~----~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp~~A~~L~~l 84 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGED----ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SPDSAHSLFEL 84 (111)
T ss_pred cCHHHHHHHHHHHHHHccCC----CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-ChhHHHHHHHH
Confidence 57777877776655443322 22346777788877554 45554445555555555443221 23338999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHH
Q 017388 282 CLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 282 g~a~~~~~~~~eAi~~~ekAl~i 304 (372)
|.=+....-|++++.-.+++|.|
T Consensus 85 a~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 85 ASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcc
Confidence 98777777777777777777765
No 329
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=68.61 E-value=61 Score=31.22 Aligned_cols=89 Identities=10% Similarity=0.071 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
|...|..+|+.+...|-.. .+.+....+..+..++.+.|...|++|+... +.+. ..-..|-..-.--.
T Consensus 51 d~~~A~~Ife~glk~f~~~-------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l----~~~~-~~~~iw~~~i~fE~ 118 (280)
T PF05843_consen 51 DPKRARKIFERGLKKFPSD-------PDFWLEYLDFLIKLNDINNARALFERAISSL----PKEK-QSKKIWKKFIEFES 118 (280)
T ss_dssp -HHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS----SCHH-HCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----Cchh-HHHHHHHHHHHHHH
Confidence 5667888888888766432 3445555567788899999999999998762 2111 12334444444445
Q ss_pred hCCCchHHHHHHHHHHHHHHH
Q 017388 287 IGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 287 ~~~~~~eAi~~~ekAl~i~~~ 307 (372)
..|+++.....++++.+++..
T Consensus 119 ~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 119 KYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHS-HHHHHHHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHHhhh
Confidence 556777777777777776644
No 330
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=68.01 E-value=10 Score=30.52 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
|.=.++.+.||..++..|+|++|++.+-..+...+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 44568899999999999999999998877665543
No 331
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.00 E-value=16 Score=39.00 Aligned_cols=87 Identities=22% Similarity=0.216 Sum_probs=61.1
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017388 204 DESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE-----DIETSLSDYQKALTILERMVEPDSRHIAELN 278 (372)
Q Consensus 204 d~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~-----~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~ 278 (372)
-..|++.|+..|..|..-|.+.... ....+...||.+|.... ++..|+..|.+|-.+- + ..+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~--~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-------~---~~a~ 328 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATK--GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-------N---PDAQ 328 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhh--cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-------C---chHH
Confidence 3457888888887776654443221 13345667888888854 6666777777666552 3 3789
Q ss_pred HHHHHHHHhCC---CchHHHHHHHHHH
Q 017388 279 FRICLCLEIGS---KPQEAIPYCQKAI 302 (372)
Q Consensus 279 ~~Lg~a~~~~~---~~~eAi~~~ekAl 302 (372)
|.||.+|.... ++..|..+|..|.
T Consensus 329 ~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 329 YLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred HHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 99999999888 4679999999987
No 332
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.89 E-value=5.2 Score=39.12 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 235 ~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
++.+.+-|++-+.||-.|...|.+|+.. +++.+.+..+-++|+.+.|+..+|++..++++.+
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444444444444444444332 2223444555666666666666666666655544
No 333
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.76 E-value=36 Score=33.63 Aligned_cols=88 Identities=19% Similarity=0.170 Sum_probs=60.2
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHH---------------HHHHHHHhcCC
Q 017388 205 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQK---------------ALTILERMVEP 269 (372)
Q Consensus 205 ~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~---------------AL~I~~~l~~~ 269 (372)
.+++..|...|..++... ++.+++...|++.+++.|+++.|...|.. -|++..+.-..
T Consensus 147 ~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 147 AEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred ccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456666666666665543 33477788888889999998777766544 34444443221
Q ss_pred -----------CChhHHHHHHHHHHHHHhCCCchHHHHHHH
Q 017388 270 -----------DSRHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (372)
Q Consensus 270 -----------~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~e 299 (372)
.+|.-.++-+.|+..|...|+++.|++++=
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll 260 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL 260 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 234445777899999999999999998873
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.37 E-value=11 Score=39.29 Aligned_cols=85 Identities=24% Similarity=0.210 Sum_probs=54.0
Q ss_pred ChHHHHHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017388 206 SDLDLAWKM--LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 283 (372)
Q Consensus 206 ~dl~~Awe~--Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~ 283 (372)
-.|++|.++ |+.|+.|.... .-...|..||++.+.+|+++-|..+|+++=++-.-+|--....-.+-+-+|+.
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHhHHHHhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHH
Confidence 578888876 88888876443 34569999999999999999999999988665443221011111233444554
Q ss_pred HHHhCCCchHHH
Q 017388 284 CLEIGSKPQEAI 295 (372)
Q Consensus 284 a~~~~~~~~eAi 295 (372)
.-...|++.-|.
T Consensus 398 ~a~~~~~~n~af 409 (443)
T PF04053_consen 398 IAEERGDINIAF 409 (443)
T ss_dssp HHHHTT-HHHHH
T ss_pred HHHHccCHHHHH
Confidence 445555554443
No 335
>PF15469 Sec5: Exocyst complex component Sec5
Probab=66.30 E-value=23 Score=31.78 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
+.+..+..+|+.-+-+|.=- ..+- -++..|+|+.++.+|.+|..++.+...
T Consensus 71 ~~l~~~l~~l~r~~flF~LP----~~L~--------~~i~~~dy~~~i~dY~kak~l~~~~~~----------------- 121 (182)
T PF15469_consen 71 DKLRNALEFLQRNRFLFNLP----SNLR--------ECIKKGDYDQAINDYKKAKSLFEKYKQ----------------- 121 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhH----HHHH--------HHHHcCcHHHHHHHHHHHHHHHHHhhh-----------------
Confidence 47778888888887777421 1111 237789999999999999999987642
Q ss_pred HhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017388 286 EIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKS 318 (372)
Q Consensus 286 ~~~~~~~eAi~~~ekAl~i~~~rl~~l~~~~~~ 318 (372)
-...|++...-++..+..++..+-.
T Consensus 122 --------~~~vf~~v~~eve~ii~~~r~~l~~ 146 (182)
T PF15469_consen 122 --------QVPVFQKVWSEVEKIIEEFREKLWE 146 (182)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666665554
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.17 E-value=8.2 Score=27.08 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017388 236 LSALAEVALEREDIETSLSDYQKALT 261 (372)
Q Consensus 236 ~~~LGev~~e~~~y~~Al~~y~~AL~ 261 (372)
...|+.+|++.|+++.|...+++.+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35799999999999999999998884
No 337
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=65.18 E-value=21 Score=32.49 Aligned_cols=49 Identities=14% Similarity=-0.017 Sum_probs=41.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 017388 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALEC 107 (372)
Q Consensus 59 ~~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~ 107 (372)
...+..+...|.++-..|..+|+|..|+-....||+-+...+|..||.+
T Consensus 133 ~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 133 GYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp -TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 3445577889999999999999999999999999999999999999974
No 338
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.44 E-value=32 Score=33.47 Aligned_cols=60 Identities=20% Similarity=0.116 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHh
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALE---REDIETSLSDYQKALTILERM 266 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e---~~~y~~Al~~y~~AL~I~~~l 266 (372)
++-....+++.|--+|+...-.+|..--+|..||+++.- .+|+.-|.++|.+||+|..+.
T Consensus 162 eiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 162 EIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 344444556777777776654444444444455554443 468999999999999998744
No 339
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=63.18 E-value=19 Score=27.51 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 309 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl 309 (372)
|..+.+.|+-....|+|++|+.+|..|++.+..-+
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34455677888888999999999999999876654
No 340
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.03 E-value=45 Score=35.33 Aligned_cols=80 Identities=16% Similarity=0.271 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA 294 (372)
+..||.||++.+.........+...++.-+......-|...+.+|+.+++. +-..+|+.-..-..+|+...|
T Consensus 89 ~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR--------VdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 89 IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR--------VDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch--------HHHHHHHHHHHHHHhcccHHH
Confidence 577888888888766666778889999999999999999999999999854 447888888888888888888
Q ss_pred HHHHHHHH
Q 017388 295 IPYCQKAI 302 (372)
Q Consensus 295 i~~~ekAl 302 (372)
...|++=+
T Consensus 161 RqiferW~ 168 (677)
T KOG1915|consen 161 RQIFERWM 168 (677)
T ss_pred HHHHHHHH
Confidence 88877644
No 341
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=62.66 E-value=18 Score=31.12 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=46.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--------------------HHHhCCCchHHHHHHH
Q 017388 240 AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL--------------------CLEIGSKPQEAIPYCQ 299 (372)
Q Consensus 240 Gev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~--------------------a~~~~~~~~eAi~~~e 299 (372)
-.+......+..++..|..++...+.+-... .-..+++.||. =|..-..+++|+.+++
T Consensus 23 ~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~--~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~ 100 (140)
T PRK03947 23 EALQQQLEELQASINELDTAKETLEELKSKG--EGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILD 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHH
Confidence 3344555567788888888888877665321 11244444443 3333335678888887
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017388 300 KAISVCKSRVQRLLNEVK 317 (372)
Q Consensus 300 kAl~i~~~rl~~l~~~~~ 317 (372)
+-++.+...+..++..+.
T Consensus 101 ~~~~~l~~~~~~l~~~l~ 118 (140)
T PRK03947 101 KRKEELEKALEKLEEALQ 118 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777755544
No 342
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=62.54 E-value=20 Score=23.91 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHH
Q 017388 276 ELNFRICLCLEIGSKPQEAIPYCQ 299 (372)
Q Consensus 276 e~~~~Lg~a~~~~~~~~eAi~~~e 299 (372)
+-++.+|-.+...|++++|+..|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 457889999999999999999965
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.81 E-value=43 Score=33.32 Aligned_cols=67 Identities=19% Similarity=0.120 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Q 017388 236 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 310 (372)
Q Consensus 236 ~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~ 310 (372)
+..-+.-|++.|.|.+|+...+++|.+. |..-..+.-|=..|...|+--.|+.||++--.++++-++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld--------pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelg 348 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD--------PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELG 348 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhC
Confidence 3445677899999999999999999875 344567777888999999999999999987777666543
No 344
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.78 E-value=32 Score=36.58 Aligned_cols=74 Identities=12% Similarity=-0.055 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHH
Q 017388 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK-PQEAIPYCQKAISVC 305 (372)
Q Consensus 231 ~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~-~~eAi~~~ekAl~i~ 305 (372)
...=.+..+|-+...+|+-.+|..+|..++.= ......++..++.+||-||..|-..+. ++++..+..+|-+-.
T Consensus 447 d~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 447 DEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 34456888999999999999999999999865 444445777889999999999999988 999999999998765
No 345
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.11 E-value=1.1e+02 Score=29.93 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=45.9
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCC----Cc----cHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCCh
Q 017388 204 DESDLDLAWKMLDVARAIAEKHWGD----SM----EKVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSR 272 (372)
Q Consensus 204 d~~dl~~Awe~Le~Ar~I~ek~~~~----~~----~~A~~~~~LGev~~e~~~---y~~Al~~y~~AL~I~~~l~~~~~r 272 (372)
.++.|+.=-.+..+.+.||.|+++- .+ -....+..|..|-.++.. .+-...++..++.+...+-
T Consensus 88 ~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLe----- 162 (269)
T PF05278_consen 88 SVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLE----- 162 (269)
T ss_pred eECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHH-----
Confidence 3667776667778899999999762 11 112233334444444322 3444556666666665442
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHH
Q 017388 273 HIAELNFRICLCLEIGSKPQEAIPYCQ 299 (372)
Q Consensus 273 ~iAe~~~~Lg~a~~~~~~~~eAi~~~e 299 (372)
.+-.+++........+-+|..+|.
T Consensus 163 ---sa~vkV~WLR~~L~Ei~Ea~e~~~ 186 (269)
T PF05278_consen 163 ---SAKVKVDWLRSKLEEILEAKEIYD 186 (269)
T ss_pred ---HcCcchHHHHHHHHHHHHHHHHHH
Confidence 233334443333334445555444
No 346
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=61.01 E-value=56 Score=25.86 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccccchhccchhhhHHHHHHHHHHhhHHHHHhhhc
Q 017388 292 QEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKAS 370 (372)
Q Consensus 292 ~eAi~~~ekAl~i~~~rl~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~el~~ll~dl~~Kie 370 (372)
..-..-|..++.-++.||...+..+.+..+ .+. +...+ ......++.+|.-.+++|.++..+++
T Consensus 20 ~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg---------i~~-----s~eeq-~~~i~~Le~~i~~k~~~L~~~~~~~~ 83 (83)
T PF07544_consen 20 PLSSKDLDTATGSLKHKLQKARAAIRELPG---------IDR-----SVEEQ-EEEIEELEEQIRKKREVLQKFKERVM 83 (83)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCC---------ccC-----CHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344567788888889999999999998765 111 11111 23466778888888899998888764
No 347
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=60.97 E-value=31 Score=38.75 Aligned_cols=70 Identities=16% Similarity=-0.038 Sum_probs=47.4
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
|+.--+...=|-+....|++++|. .||+-.....+.+. .++--|-.||..++++++|...|++++..+..
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~----~~Le~~~~~~~~D~----~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEAL----KLLEALYGLKGTDD----LTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHH----HHHhhhccCCCCch----HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 344444445566788889999888 33433333333333 45566778999999999999999999865543
No 348
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.73 E-value=20 Score=30.56 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCC
Q 017388 212 WKMLDVARAIAEKHWG--DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 289 (372)
Q Consensus 212 we~Le~Ar~I~ek~~~--~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~ 289 (372)
..+|+.+...|..... +.+....++...++... .+...|.-. ..+-.| ..+|.-|-..|..+...+
T Consensus 46 ~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l---~~~~IG---~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 46 LELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFL---YSKGIG---TKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp HHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHH---HHHTTS---TTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHH---HHcCcc---HHHHHHHHHHHHHHHHcC
Confidence 4578899888865433 35778888888877544 555555522 222222 456899999999999999
Q ss_pred CchHHHHHHHHHH
Q 017388 290 KPQEAIPYCQKAI 302 (372)
Q Consensus 290 ~~~eAi~~~ekAl 302 (372)
++.+|.+.|+++|
T Consensus 114 ~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 NFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
Confidence 9999999999876
No 349
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=59.77 E-value=16 Score=22.92 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCC----CchHHHHHHHHHHH
Q 017388 276 ELNFRICLCLEIGS----KPQEAIPYCQKAIS 303 (372)
Q Consensus 276 e~~~~Lg~a~~~~~----~~~eAi~~~ekAl~ 303 (372)
.+.++||.+|.... ++..|+.+|++|..
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 56788999987653 77899999999864
No 350
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=58.96 E-value=27 Score=27.10 Aligned_cols=37 Identities=8% Similarity=-0.038 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~ 311 (372)
|..+.+-|+-....|+|++|+.+|.+||+.|..-+..
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~ 42 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHY 42 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556677888999999999999999998876643
No 351
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=58.34 E-value=18 Score=23.27 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=21.4
Q ss_pred HHHHHHHH--HHHHhCC-----CchHHHHHHHHHHH
Q 017388 275 AELNFRIC--LCLEIGS-----KPQEAIPYCQKAIS 303 (372)
Q Consensus 275 Ae~~~~Lg--~a~~~~~-----~~~eAi~~~ekAl~ 303 (372)
+.+.|+|| .+|.... ++.+|+.+|++|.+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 46788999 6666654 36888888888764
No 352
>PRK10941 hypothetical protein; Provisional
Probab=58.30 E-value=80 Score=30.66 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
+.+.+.+|=.+++..++|+.|+.+.+..|.+.. +++ .-+--.|++|...+.+..|+.-++.-|+-|
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-----~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDP-----EDP---YEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-----CCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 567788999999999999999999998888653 443 344558999999999999988777766555
No 353
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=58.05 E-value=30 Score=34.65 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 274 iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
-|.+||.+|......+++.+||.+++.|...+
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l 283 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNL 283 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 58899999999999999999999999999864
No 354
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.43 E-value=23 Score=36.69 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhCCCchHHHH---HHHHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-HIAELNFRICLCLEIGSKPQEAIP---YCQKAISVCKS 307 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r-~iAe~~~~Lg~a~~~~~~~~eAi~---~~ekAl~i~~~ 307 (372)
.|-+..++|-.+-+.++.++|+.+|+++|.+...-.+-..+ .++ +....++.|-. .++.++.-.+.
T Consensus 21 ~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~----------~~~~~W~dAcaliQklkes~~~vr~ 90 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNA----------RKSEMWKDACALIQKLKESKSSVRH 90 (560)
T ss_pred HHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCccccccccc----------ccchhhHHHHHHHHHHHHHHHHHHH
Confidence 35567788999999999999999999999999873322221 011 11112344433 33446677788
Q ss_pred HHHHHHHHHHhhccCC
Q 017388 308 RVQRLLNEVKSLGESA 323 (372)
Q Consensus 308 rl~~l~~~~~~~~~~~ 323 (372)
||.-|++++.+....+
T Consensus 91 Rl~vL~kqkqsid~~~ 106 (560)
T KOG2709|consen 91 RLNVLKKQKQSIDEGP 106 (560)
T ss_pred HHHHHHhhhcccccCc
Confidence 8888888777765543
No 355
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=55.99 E-value=23 Score=29.92 Aligned_cols=81 Identities=16% Similarity=0.305 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC--CC----------------hhHHHHHHHHHHHHHhCCCchHHHHHHH
Q 017388 238 ALAEVALEREDIETSLSDYQKALTILERMVEP--DS----------------RHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (372)
Q Consensus 238 ~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~--~~----------------r~iAe~~~~Lg~a~~~~~~~~eAi~~~e 299 (372)
.+-.+.....++...+..|..+++....+-+. .+ +..-..+..||.=|.--..+++|+.+++
T Consensus 14 ~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~l~ 93 (129)
T cd00584 14 EIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLD 93 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHHHH
Confidence 34445555666778888888888888777541 11 0011234455555555556788888888
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 017388 300 KAISVCKSRVQRLLNEVKS 318 (372)
Q Consensus 300 kAl~i~~~rl~~l~~~~~~ 318 (372)
+-+..++.++..+++.+..
T Consensus 94 ~r~~~l~~~~~~l~~~l~~ 112 (129)
T cd00584 94 KKIEELTKQIEKLQKELAK 112 (129)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888877777777655554
No 356
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=55.32 E-value=2.5e+02 Score=28.75 Aligned_cols=90 Identities=13% Similarity=-0.005 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHh----cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--HhcCCCChhHHHHHHHHH-----
Q 017388 214 MLDVARAIAEKH----WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE--RMVEPDSRHIAELNFRIC----- 282 (372)
Q Consensus 214 ~Le~Ar~I~ek~----~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~--~l~~~~~r~iAe~~~~Lg----- 282 (372)
+|+.|...|.+. ........+|...++++....+.|..|...+-+...-.. .+.+-. .|..+-+++
T Consensus 277 ~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~---~alllE~~a~~~~~ 353 (414)
T PF12739_consen 277 YLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFG---SALLLEQAAYCYAS 353 (414)
T ss_pred HHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHh---hHHHHHHHHHhhcc
Confidence 355666666662 222234567899999999999998887776666554421 111000 233333333
Q ss_pred ------------------------HHHHhCCCchHHHHHHHHHHHHHH
Q 017388 283 ------------------------LCLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 283 ------------------------~a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
.-|...|+...|+.+|.+|+.++.
T Consensus 354 ~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 354 LRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred cccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 445556666888888888888876
No 357
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=54.09 E-value=2.3e+02 Score=27.91 Aligned_cols=36 Identities=19% Similarity=0.069 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 017388 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERM 266 (372)
Q Consensus 231 ~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l 266 (372)
..|-+|..+|....+.++|-+|+..++.|+...+..
T Consensus 249 ~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~ 284 (345)
T cd09034 249 FKALAYYYHGLKLDEANKIGEAIARLQAALELLKES 284 (345)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999877654
No 358
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=53.98 E-value=26 Score=27.28 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~ 311 (372)
|..+.+.|+-....++|.+|+.+|..+|+.+...+..
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~ 42 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQG 42 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3444556666677799999999999999998776543
No 359
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=53.70 E-value=37 Score=36.43 Aligned_cols=73 Identities=14% Similarity=0.024 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 232 KVDILSALAEVAL--EREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 232 ~A~~~~~LGev~~--e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
.--++.+||++-- ....=..++..|.+|+...+.++..+|- -.|-.+|-.|.+.++|.+|+.++-.|-.+++.
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666532 2233456799999999999999986663 55666999999999999999999998877543
No 360
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.62 E-value=1.9e+02 Score=28.52 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=54.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 017388 243 ALEREDIETSLSDYQKALTILERMVEPD----------SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 243 ~~e~~~y~~Al~~y~~AL~I~~~l~~~~----------~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
.+..-.|+.....|.+||.......... ...+..++.+++.-+...|..+.|+..+|-.|++.-
T Consensus 112 ~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 112 NFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3556679999999999999988776543 467888999999999999999999999999998764
No 361
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=52.91 E-value=3.2 Score=43.25 Aligned_cols=106 Identities=16% Similarity=0.027 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC-------CccHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhcCCCChhHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGD-------SMEKVDILSALAEVALEREDIETSLS-DYQKALTILERMVEPDSRHIAELN 278 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~-------~~~~A~~~~~LGev~~e~~~y~~Al~-~y~~AL~I~~~l~~~~~r~iAe~~ 278 (372)
|+--|+..+..|...-...... .|.++.-|......-.+.+-+.+=.. .--++|-|++.++|+.|+.++--.
T Consensus 261 D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~~RmqaLiirerILgpsh~d~sYyi 340 (615)
T KOG0508|consen 261 DLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDEMRMQALIIRERILGPSHPDVSYYI 340 (615)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCceeEE
Confidence 6666777776666544331111 23344434333333333332322222 335789999999999999887666
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHH
Q 017388 279 FRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 312 (372)
Q Consensus 279 ~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~l 312 (372)
.-.|-+|..+|+|+.-|..+.-||.+.++.++.|
T Consensus 341 r~rgavyad~g~~~rCi~LWkyAL~mqQk~l~Pl 374 (615)
T KOG0508|consen 341 RYRGAVYADSGEFERCIRLWKYALDMQQKNLEPL 374 (615)
T ss_pred EeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCC
Confidence 6689999999999999999999999999876665
No 362
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=52.80 E-value=1.2e+02 Score=31.65 Aligned_cols=79 Identities=14% Similarity=0.257 Sum_probs=55.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcC------CCChh----HHHHHHHHHHHHHhCCCchHHHHHHHHHHH------
Q 017388 240 AEVALEREDIETSLSDYQKALTILERMVE------PDSRH----IAELNFRICLCLEIGSKPQEAIPYCQKAIS------ 303 (372)
Q Consensus 240 Gev~~e~~~y~~Al~~y~~AL~I~~~l~~------~~~r~----iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~------ 303 (372)
|.-...+++|-.|..-|+.||++..+-.- +..-. -..+--+|.+||..+++.+-|+.|-.++|.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 34456677888888888888888876421 22222 223455799999999999999999988883
Q ss_pred -------HHHHHHHHHHHHHHh
Q 017388 304 -------VCKSRVQRLLNEVKS 318 (372)
Q Consensus 304 -------i~~~rl~~l~~~~~~ 318 (372)
++-.+|++..+...+
T Consensus 263 rnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666555444
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.62 E-value=1.1e+02 Score=24.28 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
.-+.--|-=.....+..+||...+++|...... ..|- .++-.|..||+..|+|.+.+.+--+=++|
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~---~~rf--~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDR---EDRF--RVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444557778889999999998876541 2233 44555889999999999998887665555
No 364
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=52.54 E-value=2.7e+02 Score=28.32 Aligned_cols=79 Identities=23% Similarity=0.247 Sum_probs=51.5
Q ss_pred ccHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHHhc----CC-----CChhHHHHHHH
Q 017388 230 MEKVDILSALAEVALERED--------------------IETSLSDYQKALTILERMV----EP-----DSRHIAELNFR 280 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~--------------------y~~Al~~y~~AL~I~~~l~----~~-----~~r~iAe~~~~ 280 (372)
.++|.+|..+-++.+...+ -..|+.+|+.-|+..+.-- |+ .-|.+-.+|+.
T Consensus 226 fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~ 305 (371)
T PF12309_consen 226 FELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFH 305 (371)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHH
Confidence 3467777777777766655 2678899999888877322 21 23568889999
Q ss_pred HHHHHHhC--CCchHHHHHHHHHHHHHHHH
Q 017388 281 ICLCLEIG--SKPQEAIPYCQKAISVCKSR 308 (372)
Q Consensus 281 Lg~a~~~~--~~~~eAi~~~ekAl~i~~~r 308 (372)
+|..|... ++..+=+.+++++|..++..
T Consensus 306 ~arl~~K~~~~~~~~~~~~l~~sl~~y~~v 335 (371)
T PF12309_consen 306 IARLYSKLITSDPKEQLENLEKSLEYYKWV 335 (371)
T ss_pred HHHHHccccCCChHHHHHHHHHHHHHHHHH
Confidence 99999877 34444444444444444443
No 365
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.32 E-value=49 Score=29.26 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=46.7
Q ss_pred ChHHHHHHHH--------HHHHHHHHHhcC--CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 206 SDLDLAWKML--------DVARAIAEKHWG--DSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 206 ~dl~~Awe~L--------e~Ar~I~ek~~~--~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
..|..||.+. ..-..|++..+. ++...=+|.+-|+--+...++|+.|+.+...+|++..
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 5799999873 556677777653 3455678889999999999999999999999888753
No 366
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.28 E-value=21 Score=36.93 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
|.+..++|+||...+++++|+.+|+++|.++..
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 456678999999999999999999999998655
No 367
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.06 E-value=51 Score=33.49 Aligned_cols=60 Identities=13% Similarity=-0.017 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 297 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~ 297 (372)
|-...+|..++=-..+.|-|++|...-+++|+|-+ .=+-+++-++-+++..++++++.++
T Consensus 172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~--------~D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINR--------FDCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCC--------cchHHHHHHHHHHHhcchhhhHHHH
Confidence 44577888888888999999999999999998854 2346677777777777777665543
No 368
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.70 E-value=2.6e+02 Score=28.02 Aligned_cols=64 Identities=9% Similarity=-0.001 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 017388 236 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 236 ~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekA 301 (372)
-..|.-.+...+.|.+|+....-.|.-.+++- +-+.+...|.-=+-+|+...+..++....-.|
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYD--DKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--CccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 34677788999999999999998888888875 44556666666677777666666555444433
No 369
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.60 E-value=25 Score=27.62 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 278 NFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 278 ~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
+.+-|+--...|+|++|+..|.+||+.|..
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 344556667889999999999999999877
No 370
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=50.08 E-value=1.5e+02 Score=24.54 Aligned_cols=75 Identities=27% Similarity=0.303 Sum_probs=53.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017388 239 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKS 318 (372)
Q Consensus 239 LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~l~~~~~~ 318 (372)
+..+......++.-+.....+++-...+- ++ +.+|-.+|-++-... .++|+..++.-++.++.++..|.+.++.
T Consensus 19 ~~~l~~q~~~le~~~~E~~~v~~eL~~l~-~d----~~vyk~VG~vlv~~~-~~e~~~~l~~r~e~ie~~i~~lek~~~~ 92 (110)
T TIGR02338 19 LQAVATQKQQVEAQLKEAEKALEELERLP-DD----TPVYKSVGNLLVKTD-KEEAIQELKEKKETLELRVKTLQRQEER 92 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-Cc----chhHHHhchhhheec-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666667777776666553 22 478888999888855 6899888888888888888888766555
Q ss_pred h
Q 017388 319 L 319 (372)
Q Consensus 319 ~ 319 (372)
.
T Consensus 93 l 93 (110)
T TIGR02338 93 L 93 (110)
T ss_pred H
Confidence 4
No 371
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.95 E-value=88 Score=27.41 Aligned_cols=52 Identities=25% Similarity=0.208 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~e 125 (372)
++.++.+++.++..|+|.-|+.+...++.. .|+...+......+|..++...
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~a--------dp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFA--------DPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHHHhc
Confidence 467788999999999999999999988886 5888889999999999988654
No 372
>PF12854 PPR_1: PPR repeat
Probab=49.74 E-value=30 Score=22.34 Aligned_cols=26 Identities=8% Similarity=-0.083 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQK 300 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ek 300 (372)
..+|..|=.+|...|++++|+..|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 36788899999999999999998864
No 373
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=49.46 E-value=8.3 Score=32.56 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=41.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhC--------------------CCchHHHHHHH
Q 017388 240 AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG--------------------SKPQEAIPYCQ 299 (372)
Q Consensus 240 Gev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~--------------------~~~~eAi~~~e 299 (372)
-.+......+..++..|+.++.....+-+... -.+++.||...... ..+++|+++|+
T Consensus 16 ~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~---~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~ 92 (126)
T TIGR00293 16 ESLQAQIAALRALIAELETAIETLEDLKGAEG---KETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLK 92 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCC---CeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHH
Confidence 34445556677788888888888876654311 23444444433333 33456666665
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017388 300 KAISVCKSRVQRLLNEVK 317 (372)
Q Consensus 300 kAl~i~~~rl~~l~~~~~ 317 (372)
+-+..+...+..+++.+.
T Consensus 93 ~~~~~l~~~~~~l~~~l~ 110 (126)
T TIGR00293 93 KRIEELEKAIEKLQEALA 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555544333
No 374
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.45 E-value=17 Score=26.82 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhcC
Q 017388 348 LTDKEAEIETLSGLCGDLEKKASP 371 (372)
Q Consensus 348 ~~~~~~Ei~el~~ll~dl~~Kied 371 (372)
...+++|+++|+.-+.+|+.-|.+
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777665543
No 375
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=49.08 E-value=3e+02 Score=27.83 Aligned_cols=37 Identities=22% Similarity=0.137 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHH
Q 017388 61 KTVEFADELMEKGTNALKES---------DYGEAAECFSRALEIRV 97 (372)
Q Consensus 61 ~~~~~a~~L~~~G~~~~~~g---------dy~eAv~~~~~Alel~~ 97 (372)
...|.+--|++.|..+-..| .+..|+.+|++|..+..
T Consensus 101 l~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~ 146 (350)
T cd09244 101 VAFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFN 146 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 34678999999998875543 37789999999888753
No 376
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.73 E-value=61 Score=35.23 Aligned_cols=84 Identities=18% Similarity=0.111 Sum_probs=54.3
Q ss_pred CcChHHHHHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017388 204 DESDLDLAWKM--LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 281 (372)
Q Consensus 204 d~~dl~~Awe~--Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~L 281 (372)
++..|++|..+ |++|+.|..+... ..-|..||+..+..++|.-|.++|.+|-++---++-.....-++-+-.|
T Consensus 640 ~d~rFelal~lgrl~iA~~la~e~~s-----~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 640 PDQRFELALKLGRLDIAFDLAVEANS-----EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhhhhhhhhcCcHHHHHHHHHhhcc-----hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHH
Confidence 44567777765 8888888766532 3458899999999999999999999997765443332222223334444
Q ss_pred HHHHHhCCCch
Q 017388 282 CLCLEIGSKPQ 292 (372)
Q Consensus 282 g~a~~~~~~~~ 292 (372)
|..-...|+++
T Consensus 715 a~~~~~~g~~N 725 (794)
T KOG0276|consen 715 ASLAKKQGKNN 725 (794)
T ss_pred HHHHHhhcccc
Confidence 43333333333
No 377
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.37 E-value=40 Score=20.12 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 017388 80 SDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRAL 118 (372)
Q Consensus 80 gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~AL 118 (372)
|+++.|..+|++++.. .|....++..|..-.
T Consensus 1 ~~~~~~r~i~e~~l~~--------~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEK--------FPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHH--------CCCChHHHHHHHHHH
Confidence 5788999999999987 467777887776543
No 378
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=48.31 E-value=2.2e+02 Score=26.96 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=38.4
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 017388 78 KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (372)
Q Consensus 78 ~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~e 125 (372)
+.-.|..+..++.++.--....+|+..+ .+.++..||.++..+|+..
T Consensus 58 k~~~~p~~~~~Lg~~M~~~G~~lg~dS~-~G~aL~~~G~a~~kia~~~ 104 (223)
T cd07614 58 KNPGYPQSEGLLGETMIRYGKELGDESN-FGDALLDAGESMKRLAEVK 104 (223)
T ss_pred cCCCCCChHhHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHH
Confidence 4456888899999999888888998655 7889999999999887653
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.97 E-value=1.8e+02 Score=29.53 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHH
Q 017388 237 SALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS--KPQEAIPYCQKAISVC 305 (372)
Q Consensus 237 ~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~--~~~eAi~~~ekAl~i~ 305 (372)
...+.-.+..++|..|...|...+.- ++..-+ -..+..|+.+|..-. +|.+|..++++.+...
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 33444456678899999999887752 333322 577888999998877 4679999999887654
No 380
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=47.71 E-value=1.3e+02 Score=27.11 Aligned_cols=70 Identities=20% Similarity=0.145 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 286 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~ 286 (372)
+++.+-.+|+--|++ .|+.....+.-|.+++.+++|.+|+..|+... ...+....+---+++|+.
T Consensus 25 ~~~D~e~lL~ALrvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~--------~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 25 DPDDAEALLDALRVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELE--------ERAPGFPYAKALLALCLY 89 (160)
T ss_pred ChHHHHHHHHHHHHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh--------ccCCCChHHHHHHHHHHH
Confidence 444444555544443 47788899999999999999999999888742 122322233333677777
Q ss_pred hCCCc
Q 017388 287 IGSKP 291 (372)
Q Consensus 287 ~~~~~ 291 (372)
..+++
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 77765
No 381
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=47.54 E-value=61 Score=25.85 Aligned_cols=37 Identities=27% Similarity=0.206 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVS 98 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~ 98 (372)
-+..|...+..+...+..|+|+.|+-+...|++...+
T Consensus 4 ~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~~lk 40 (118)
T PF05168_consen 4 WLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEKALK 40 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999998644
No 382
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=47.50 E-value=42 Score=35.92 Aligned_cols=81 Identities=17% Similarity=0.127 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH
Q 017388 218 ARAIAEKHWGDSMEKVDILSALAEVALER---EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (372)
Q Consensus 218 Ar~I~ek~~~~~~~~A~~~~~LGev~~e~---~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA 294 (372)
+...|.+.....+..+.+|.+-+.+++.+ ++.-.|+.|...||.|-..+ -.+||.|+.|+...+++.+|
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~--------~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI--------QKAHFRLARALNELTRYLEA 464 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH--------HHHHHHHHHHHHHHhhHHHh
Confidence 34445554444456677788888888765 45566777777777775544 48999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 017388 295 IPYCQKAISVCK 306 (372)
Q Consensus 295 i~~~ekAl~i~~ 306 (372)
+.+...+.-.+.
T Consensus 465 l~~~~alq~~~P 476 (758)
T KOG1310|consen 465 LSCHWALQMSFP 476 (758)
T ss_pred hhhHHHHhhcCc
Confidence 988766554444
No 383
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=46.75 E-value=92 Score=31.47 Aligned_cols=36 Identities=19% Similarity=-0.033 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 017388 273 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 308 (372)
Q Consensus 273 ~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~r 308 (372)
--|.+||..|..+...+++.+||.+++.|...++.-
T Consensus 246 f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a 281 (353)
T cd09243 246 YLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKA 281 (353)
T ss_pred HHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999976553
No 384
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=45.59 E-value=1.1e+02 Score=34.11 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=27.5
Q ss_pred CccHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017388 229 SMEKVDILSALAEVALEREDIETSLSDYQKA 259 (372)
Q Consensus 229 ~~~~A~~~~~LGev~~e~~~y~~Al~~y~~A 259 (372)
...+-+++.++|+.+.++-.++.|..+|.+|
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3557889999999999999999999999876
No 385
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=45.21 E-value=82 Score=26.44 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALE 106 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe 106 (372)
.+.+...+.++..++..|+++.+...+.+|..|...+..-..++
T Consensus 26 yd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e 69 (122)
T PF02561_consen 26 YDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFE 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 45788889999999999999999999999999999886654444
No 386
>PF12854 PPR_1: PPR repeat
Probab=45.14 E-value=39 Score=21.76 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017388 233 VDILSALAEVALEREDIETSLSDYQK 258 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~ 258 (372)
.-+|+.|=..++..|++++|+..|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45799999999999999999998874
No 387
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=45.09 E-value=2.7e+02 Score=26.38 Aligned_cols=48 Identities=17% Similarity=0.078 Sum_probs=38.8
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 017388 77 LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (372)
Q Consensus 77 ~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~e 125 (372)
-+...|..+..++.++.--....||+..| .+.++..||.|+..+|+..
T Consensus 57 ~K~~~~p~~~~~Lg~~M~~~G~elg~dS~-~G~aL~~~G~A~~kla~~~ 104 (223)
T cd07613 57 EKGPGYPQAEALLAEAMLKFGRELGDECN-FGPALGDVGEAMRELSEVK 104 (223)
T ss_pred ccCCCCCChHhHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHH
Confidence 34557888889999999988899998755 7888888998888887654
No 388
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=43.89 E-value=67 Score=33.81 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=46.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHH--------------HHHHHHHH
Q 017388 241 EVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC--------------QKAISVCK 306 (372)
Q Consensus 241 ev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~--------------ekAl~i~~ 306 (372)
+-....|+|..+.-+-....+|.++ ..+|--||+|+....+|.+|..++ ++|+.+|.
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaPS---------~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lCq 540 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAPS---------PQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALCQ 540 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 3456678887777666666666542 378888999999999999999876 56777777
Q ss_pred HHHHH
Q 017388 307 SRVQR 311 (372)
Q Consensus 307 ~rl~~ 311 (372)
+++.+
T Consensus 541 Kh~~k 545 (549)
T PF07079_consen 541 KHLPK 545 (549)
T ss_pred Hhhhh
Confidence 77654
No 389
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=43.16 E-value=2.9e+02 Score=26.01 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCC---------------Cch
Q 017388 232 KVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS---------------KPQ 292 (372)
Q Consensus 232 ~A~~~~~LGev~~e----~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~---------------~~~ 292 (372)
..++..+||.+|.. .-|+.+|+..|.+|-..-. ...+|+++ ++...| +..
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~----------~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~ 254 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD----------GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKK 254 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC----------HHHHHHHH-HHHhcCCCchhhhhcccccCCCHH
Confidence 67888899988755 3488999999998877532 57888999 666555 555
Q ss_pred HHHHHHHHHHHH
Q 017388 293 EAIPYCQKAISV 304 (372)
Q Consensus 293 eAi~~~ekAl~i 304 (372)
.|...|.++...
T Consensus 255 ~a~~~~~~~~~~ 266 (292)
T COG0790 255 QALEWLQKACEL 266 (292)
T ss_pred HHHHHHHHHHHc
Confidence 666666665543
No 390
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=43.15 E-value=87 Score=26.81 Aligned_cols=38 Identities=34% Similarity=0.455 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 017388 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIR 96 (372)
Q Consensus 59 ~~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~ 96 (372)
++....-...-+.+|-.++..|++++|+.+|..|+.+.
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~ 93 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVC 93 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 44555557778899999999999999999999999873
No 391
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.86 E-value=38 Score=37.85 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017388 213 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTI 262 (372)
Q Consensus 213 e~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I 262 (372)
.|+.+|..|-..+-.+...++.+|...|+-....|+|+.|...|-+++..
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 35788888877765555678999999999999999999999999999854
No 392
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=42.84 E-value=89 Score=32.24 Aligned_cols=34 Identities=18% Similarity=-0.042 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 274 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 274 iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
-|.+||.+|+.....+++.+||..++.|+..++.
T Consensus 295 ~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~~ 328 (413)
T cd09245 295 RALACKFLGIDAGENGKVGEAIGWLRAAKKELED 328 (413)
T ss_pred HHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999986443
No 393
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.56 E-value=1.9e+02 Score=23.83 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccccchhccchhhhHHHHHHHHHHhhHHHHHhhhc
Q 017388 292 QEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKAS 370 (372)
Q Consensus 292 ~eAi~~~ekAl~i~~~rl~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~el~~ll~dl~~Kie 370 (372)
.+.+......+.-...|+..++.+++.++. .+....++.+|.+++|=+..|..+|.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt-----------------------~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPT-----------------------RDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------------HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 466666777777789999999999998754 12356788888888888888887765
No 394
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.78 E-value=3.1e+02 Score=26.01 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhc
Q 017388 348 LTDKEAEIETLSGLCGDLEKKAS 370 (372)
Q Consensus 348 ~~~~~~Ei~el~~ll~dl~~Kie 370 (372)
......++++-+.-...++.|++
T Consensus 159 vdeA~~~l~eA~~~e~~l~~k~~ 181 (230)
T cd07625 159 VDEAIRQLEEATKHEHDLSLKLK 181 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677766666666665554
No 395
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=41.28 E-value=65 Score=26.52 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=18.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017388 290 KPQEAIPYCQKAISVCKSRVQRLLNEVK 317 (372)
Q Consensus 290 ~~~eAi~~~ekAl~i~~~rl~~l~~~~~ 317 (372)
.+++|+.++++=+..++..+..+...+.
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~ 101 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELA 101 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777777766666666666654444
No 396
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=40.27 E-value=2.1e+02 Score=33.12 Aligned_cols=123 Identities=16% Similarity=0.188 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH-------HHHHHHHHH
Q 017388 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA-------IPYCQKAIS 303 (372)
Q Consensus 231 ~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA-------i~~~ekAl~ 303 (372)
.++.+...+-+.+...+.+.+-+...+.-+.-........++.+..+.-.+-.......+++.= +.--++.+.
T Consensus 296 k~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d 375 (1074)
T KOG0250|consen 296 KVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVD 375 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555565555555555555555555555444444434444444443333333222222222 222233455
Q ss_pred HHHHHHHHHHHHH-HhhccCCCCCCCcccccccccccchhccchhhhHHHHHHHHHHhhHHHHHhhhcC
Q 017388 304 VCKSRVQRLLNEV-KSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKASP 371 (372)
Q Consensus 304 i~~~rl~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~el~~ll~dl~~Kied 371 (372)
.++..|+.+++++ ..... .+ .+..+....++.||+.+.+++..|..++++
T Consensus 376 ~l~k~I~~~~~~~~~~~~~--------~~----------~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 376 RLEKQIADLEKQTNNELGS--------EL----------EERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred HHHHHHHHHHHHHHhhhhh--------hH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666665555 22211 11 112234567888888888888888887754
No 397
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.17 E-value=1.3e+02 Score=32.98 Aligned_cols=85 Identities=19% Similarity=0.101 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcC------CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhC
Q 017388 215 LDVARAIAEKHWG------DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 288 (372)
Q Consensus 215 Le~Ar~I~ek~~~------~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~ 288 (372)
|..+...|...+. .....|....+|.-.|+...+.|.|++.|++|=+..++ +.-+-+-+-.+.-.-
T Consensus 370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~--------~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ--------SPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc--------cHHHHHHHHHHHHHh
Confidence 3444455544432 13567999999999999999999999999999766543 334444455555556
Q ss_pred CCchHHHHHHHHHHHHHHH
Q 017388 289 SKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 289 ~~~~eAi~~~ekAl~i~~~ 307 (372)
++-.+|+.+..+...++-.
T Consensus 442 ~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred cchHHHHHHHHHHHhhhcc
Confidence 6777888888777766544
No 398
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=39.62 E-value=1.3e+02 Score=30.76 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALER---------EDIETSLSDYQKALTILERMVEPDSRHIAE 276 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~---------~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe 276 (372)
++.+.|+.++..++ . .......++|..+|.||.+. ..+++|+..|+++..+...+++
T Consensus 196 gdre~Al~il~~~l---~---~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-------- 261 (374)
T PF13281_consen 196 GDREKALQILLPVL---E---SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-------- 261 (374)
T ss_pred CCHHHHHHHHHHHH---h---ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc--------
Confidence 45555555444331 1 12234678899999887653 4578899999999888854432
Q ss_pred HHHHHHHHHHhCCCc
Q 017388 277 LNFRICLCLEIGSKP 291 (372)
Q Consensus 277 ~~~~Lg~a~~~~~~~ 291 (372)
=.|++..+...|..
T Consensus 262 -GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 262 -GINAATLLMLAGHD 275 (374)
T ss_pred -hHHHHHHHHHcCCc
Confidence 23556666666653
No 399
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.61 E-value=62 Score=33.50 Aligned_cols=88 Identities=23% Similarity=0.142 Sum_probs=57.4
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH------HHhcCCCChhHHHH
Q 017388 204 DESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL------ERMVEPDSRHIAEL 277 (372)
Q Consensus 204 d~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~------~~l~~~~~r~iAe~ 277 (372)
+.|+|+.|+..|-++|.-+-. ...++..+.++=.|++..+||..-..+-.+|-.-- .+-++ +.+
T Consensus 162 ~cG~l~~Alr~YsR~RdYCTs----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~------~kl 231 (466)
T KOG0686|consen 162 DCGQLDNALRCYSRARDYCTS----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP------AKL 231 (466)
T ss_pred HhccHHHHHhhhhhhhhhhcc----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC------cch
Confidence 345666666666666654422 34688999999999999999987777777666552 11111 223
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHH
Q 017388 278 NFRICLCLEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 278 ~~~Lg~a~~~~~~~~eAi~~~ekA 301 (372)
..--|++....++|..|+.||=.+
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444566777777888888888543
No 400
>PRK05685 fliS flagellar protein FliS; Validated
Probab=38.12 E-value=1.6e+02 Score=25.21 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCC
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELA 104 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~ 104 (372)
.+.+...+..++.++..|+|+.+.....+|..|..++.+-..
T Consensus 32 ydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd 73 (132)
T PRK05685 32 YEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLD 73 (132)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 456778888899999999999999999999999988866443
No 401
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=38.08 E-value=85 Score=31.61 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 017388 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALL 119 (372)
Q Consensus 59 ~~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl 119 (372)
|.++ .+|.--++.+.+....|+.++|..+|..||.+ +|...+++..||..+-
T Consensus 110 pa~~-kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E 161 (472)
T KOG3824|consen 110 PAKV-KEAILALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFRE 161 (472)
T ss_pred chhh-HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHH
Confidence 3343 34555556677888999999999999999998 5777777777776554
No 402
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=37.95 E-value=3.4e+02 Score=31.24 Aligned_cols=113 Identities=22% Similarity=0.151 Sum_probs=73.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCccccc
Q 017388 71 EKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVK 150 (372)
Q Consensus 71 ~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d~~~~ 150 (372)
.-..++++.+.|++|+..|.|..+-. -| --+=-++.|..|-+|++++...+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~------------------------ 530 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESF---PG--RKEGYEAQFRLGITLLEKASEQG------------------------ 530 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcC---CC--cccchHHHHHhhHHHHHHHHhcC------------------------
Confidence 34467888888899988888876653 11 12444688999999998852210
Q ss_pred cccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCCc
Q 017388 151 NAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSM 230 (372)
Q Consensus 151 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~~~~~ 230 (372)
+..+ +..|+..|++.-+. +
T Consensus 531 -----------------------------------------------------~~~~-------~~~~~~~~~~~~~~-~ 549 (932)
T PRK13184 531 -----------------------------------------------------DPRD-------FTQALSEFSYLHGG-V 549 (932)
T ss_pred -----------------------------------------------------ChHH-------HHHHHHHHHHhcCC-C
Confidence 0013 45556666665332 2
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 017388 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 278 (372)
Q Consensus 231 ~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~ 278 (372)
..-==|.--|-||+.+++|++=+..|.-||+=+. +||.|...-
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 592 (932)
T PRK13184 550 GAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYS-----QHPEISRLR 592 (932)
T ss_pred CCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcC-----CCCccHHHH
Confidence 2223356667899999999999999998877553 555555443
No 403
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=37.93 E-value=1.7e+02 Score=25.34 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhhHHHHHhhhc
Q 017388 349 TDKEAEIETLSGLCGDLEKKAS 370 (372)
Q Consensus 349 ~~~~~Ei~el~~ll~dl~~Kie 370 (372)
...+.|+++|=-|+.|+..|+.
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~ 101 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRK 101 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHH
Confidence 4678899999999999999974
No 404
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=37.53 E-value=3.5e+02 Score=25.32 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHhhHHHHHhhhc
Q 017388 347 LLTDKEAEIETLSGLCGDLEKKAS 370 (372)
Q Consensus 347 ~~~~~~~Ei~el~~ll~dl~~Kie 370 (372)
.......|+++|..|..||-.|+.
T Consensus 183 ~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 183 SLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999988875
No 405
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=37.35 E-value=24 Score=36.56 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 279 FRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 279 ~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
|.+|.+|..+++|.+|+..|-..|--
T Consensus 276 Y~VGFayLmmrryadai~~F~niLly 301 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLY 301 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999887765
No 406
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=37.18 E-value=61 Score=26.45 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVS 98 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~ 98 (372)
.+|...+..++..+..|.|+.|+-..++|++...+
T Consensus 2 ~~A~~~l~~A~~~~~~g~y~~a~f~aqqavEk~lK 36 (113)
T smart00748 2 RRAKRFLEAAKLDLEKGFYDLAAFLSQQAAELALK 36 (113)
T ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999988643
No 407
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=37.08 E-value=3e+02 Score=25.19 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHhhHHHHHhhhcC
Q 017388 347 LLTDKEAEIETLSGLCGDLEKKASP 371 (372)
Q Consensus 347 ~~~~~~~Ei~el~~ll~dl~~Kied 371 (372)
.....+.+|++++.-+..++.+.++
T Consensus 164 k~~~~~~ei~~~~~~~~~~~~~~~~ 188 (236)
T PF09325_consen 164 KVEQAENEIEEAERRVEQAKDEFEE 188 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777666666655443
No 408
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=36.23 E-value=50 Score=30.09 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 017388 249 IETSLSDYQKALTILERMVEPD 270 (372)
Q Consensus 249 y~~Al~~y~~AL~I~~~l~~~~ 270 (372)
.-.++..+..+=.|..+.+|..
T Consensus 42 vqk~Ld~La~~Gki~~K~YGKq 63 (201)
T KOG4603|consen 42 VQKTLDQLAQQGKIKEKMYGKQ 63 (201)
T ss_pred HHHHHHHHHHcCchhHHhccce
Confidence 3455666666666666666653
No 409
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=35.89 E-value=59 Score=38.11 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCC
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 289 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~ 289 (372)
.++..-.+|+.++-.|+|.+|+.+|..|+.+.+..- |+-=+|.++-.++.|....+
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~--D~lW~a~alEg~~~~~~l~~ 296 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSN--DYLWLASALEGIAVCLLLLS 296 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcC--cHhhhHHHHHHHHHHHHHHh
Confidence 567777899999999999999999999999999853 66668888888887765544
No 410
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=35.81 E-value=2.4e+02 Score=30.86 Aligned_cols=73 Identities=7% Similarity=-0.011 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC----------------------------CCChhHHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVE----------------------------PDSRHIAELNFRI 281 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~----------------------------~~~r~iAe~~~~L 281 (372)
+.-+.-|+.-+--+.-+|+.-+|+.+|..++-+-..++. .+-+.++.-||-|
T Consensus 210 ~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l 289 (886)
T KOG4507|consen 210 TSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTL 289 (886)
T ss_pred chhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeH
Confidence 344555555555566778888888888877755433221 1223445557777
Q ss_pred HHHHHhCCCchHHHHHHHHHH
Q 017388 282 CLCLEIGSKPQEAIPYCQKAI 302 (372)
Q Consensus 282 g~a~~~~~~~~eAi~~~ekAl 302 (372)
|.+|.+.+.|+..+-+|..|.
T Consensus 290 ~~i~aml~~~N~S~~~ydha~ 310 (886)
T KOG4507|consen 290 GNIYAMLGEYNHSVLCYDHAL 310 (886)
T ss_pred HHHHHHHhhhhhhhhhhhhhh
Confidence 777777777766655555444
No 411
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=35.78 E-value=93 Score=25.18 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 017388 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEI 95 (372)
Q Consensus 61 ~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel 95 (372)
..+..|...+..++..+..|+|..|..+..+|...
T Consensus 40 ~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 40 VELKEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36788999999999999999999999998888776
No 412
>PRK09343 prefoldin subunit beta; Provisional
Probab=35.32 E-value=2.8e+02 Score=23.47 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017388 239 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKS 318 (372)
Q Consensus 239 LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~l~~~~~~ 318 (372)
+..+......++..+...+.++.=...+- ++ +.+|-.+|.+|-.. ..++|+.-..+-++.++.+|..|.+..+.
T Consensus 23 l~~~~~q~~~le~q~~e~~~~~~EL~~L~-~d----~~VYk~VG~vlv~q-d~~e~~~~l~~r~E~ie~~ik~lekq~~~ 96 (121)
T PRK09343 23 LERLLQQKSQIDLELREINKALEELEKLP-DD----TPIYKIVGNLLVKV-DKTKVEKELKERKELLELRSRTLEKQEKK 96 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-Cc----chhHHHhhHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555556666666666665543 23 47888999999888 56899999999999999888888766554
Q ss_pred h
Q 017388 319 L 319 (372)
Q Consensus 319 ~ 319 (372)
.
T Consensus 97 l 97 (121)
T PRK09343 97 L 97 (121)
T ss_pred H
Confidence 4
No 413
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.30 E-value=3.6e+02 Score=29.34 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=74.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-----------
Q 017388 206 SDLDLAWKMLDVARAIAEKHW-----GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP----------- 269 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~-----~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~----------- 269 (372)
..|+.|..++..|..++.-.. -.+|...+.+..+++++..+|+++-|.....+||=.....+-+
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 467888888999988875431 1357889999999999999999999999999999888775433
Q ss_pred -----CChhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 017388 270 -----DSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (372)
Q Consensus 270 -----~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl 302 (372)
.+|..=.++|+-=..+...|-+.-|.++|+--+
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlll 369 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLL 369 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 356666666666666677777777777776543
No 414
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=34.86 E-value=50 Score=33.93 Aligned_cols=55 Identities=22% Similarity=0.173 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 251 TSLSDYQKALTILERMVEPDS----RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 251 ~Al~~y~~AL~I~~~l~~~~~----r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
.|+...++||..+++-...+. ..+|+++..||+.|...+. +=-.+|++|-.|++.
T Consensus 329 ~a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~--eQe~~Y~eAE~iL~k 387 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESK--EQEKAYKEAEKILKK 387 (404)
T ss_dssp THHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchH--HHHHHHHHHHHHHHH
Confidence 467777777777776654444 4689999999999877554 334678888777543
No 415
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=34.84 E-value=1.7e+02 Score=29.89 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP-------QEAIPYCQKAISVCK 306 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~-------~eAi~~~ekAl~i~~ 306 (372)
.....||+.++-.++|+-|...|+.+.+=.. ...-...+|-++.-.|+|+...+.. +....+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~--~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFK--NDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHh--hchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 3466799999999999999999997776442 1223467899999999999888843 366677777777666
Q ss_pred H
Q 017388 307 S 307 (372)
Q Consensus 307 ~ 307 (372)
.
T Consensus 287 ~ 287 (414)
T PF12739_consen 287 K 287 (414)
T ss_pred h
Confidence 6
No 416
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.80 E-value=2.8e+02 Score=28.92 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekA 301 (372)
+=.+|..||..|...|+++.|+..|-++-..+... .+++..+.++=.+=-+.++|..=..+-.+|
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 45789999999999999999999999976666533 355666666666666666654333333333
No 417
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.34 E-value=1.3e+02 Score=26.54 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 017388 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEI 95 (372)
Q Consensus 59 ~~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel 95 (372)
++........-+.+|-.++.+|++++++.+|..|+-+
T Consensus 74 ~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~v 110 (143)
T KOG4056|consen 74 AEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVV 110 (143)
T ss_pred HHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhh
Confidence 5555566778889999999999999999999999877
No 418
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=34.29 E-value=1.1e+02 Score=25.41 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 017388 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIR 96 (372)
Q Consensus 59 ~~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~ 96 (372)
.-.-+..|..|+..|..++..||.+.|--+|-|.+.+.
T Consensus 31 l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 31 LKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 44467889999999999999999999999999999997
No 419
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=34.05 E-value=33 Score=27.54 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHH
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 312 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~l 312 (372)
......+..+......+..-+..+.-++.-...+.+ + ..+|..+|.+|-.. ..++++...+.-+..+...|..+
T Consensus 8 ~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~-~----~~~y~~vG~~fv~~-~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 8 QELNQQLQQLEQQIQQLERQLRELELTLEELEKLDD-D----RKVYKSVGKMFVKQ-DKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-T-----EEEEEETTEEEEE-EHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-c----chhHHHHhHHHHHh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666667777777777777777776543 2 35677777777666 55788888888888888887777
Q ss_pred HHHHHh
Q 017388 313 LNEVKS 318 (372)
Q Consensus 313 ~~~~~~ 318 (372)
+..++.
T Consensus 82 ~~~~~~ 87 (106)
T PF01920_consen 82 EKQLKY 87 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 420
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.89 E-value=37 Score=34.96 Aligned_cols=62 Identities=16% Similarity=0.081 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcC
Q 017388 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD 127 (372)
Q Consensus 66 a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~ 127 (372)
--.++++-+.|.-.|||-.|+..+.-.==-....|-.-.+-...+||.+|-|++-+.|+..+
T Consensus 122 YFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DA 183 (404)
T PF10255_consen 122 YFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADA 183 (404)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHH
Confidence 44788899999999999999988764211112234444455677899999999999998654
No 421
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=33.74 E-value=72 Score=18.88 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017388 235 ILSALAEVALEREDIETSLSDYQKAL 260 (372)
Q Consensus 235 ~~~~LGev~~e~~~y~~Al~~y~~AL 260 (372)
+|+.|=..+...|++++|...|++-.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHh
Confidence 57788889999999999999988654
No 422
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=33.73 E-value=75 Score=19.06 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHH
Q 017388 277 LNFRICLCLEIGSKPQEAIPYCQKA 301 (372)
Q Consensus 277 ~~~~Lg~a~~~~~~~~eAi~~~ekA 301 (372)
+|..|=.+|...+++++|+..|++-
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4666778899999999999998764
No 423
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=33.67 E-value=48 Score=29.32 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=35.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCC-h-----------------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 017388 245 EREDIETSLSDYQKALTILERMVEPDS-R-----------------HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 306 (372)
Q Consensus 245 e~~~y~~Al~~y~~AL~I~~~l~~~~~-r-----------------~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~ 306 (372)
..+....++..|+.|+...+.+-+.+. + ..-...-.||.=|.--..+++|++++++-++=+.
T Consensus 28 ~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~ 107 (145)
T COG1730 28 QIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELE 107 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHHHHHHHHHHH
Confidence 334456667777777777666544331 1 1112222344444444455666555555554444
Q ss_pred HHHHHHHHHHH
Q 017388 307 SRVQRLLNEVK 317 (372)
Q Consensus 307 ~rl~~l~~~~~ 317 (372)
+.+..+++.|.
T Consensus 108 ~~~~~l~~~l~ 118 (145)
T COG1730 108 KAIEKLQQALA 118 (145)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 424
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=33.36 E-value=1.2e+02 Score=26.12 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 017388 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVS 98 (372)
Q Consensus 59 ~~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~ 98 (372)
-+.-+.+|...+..+...+..|+|+.|+-.-++|+++..+
T Consensus 6 ~~~~~~rA~~~l~~A~~~le~G~y~~a~f~aqQAvel~lK 45 (132)
T COG2250 6 AEKWLRRAERDLKLAKRDLELGDYDLACFHAQQAVELALK 45 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 3556788999999999999999999999999999998654
No 425
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=33.20 E-value=54 Score=32.22 Aligned_cols=61 Identities=23% Similarity=0.174 Sum_probs=49.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 245 EREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 245 e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
..-....|.+++.+||-+.+.-- +.-.|..+.+..++.|....+|+-|.-||.+|+..+..
T Consensus 51 s~~~~~n~~e~~d~ALm~Ae~r~--D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 51 SDATMENAKELLDKALMTAEGRG--DRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred cccChhhHHHHHHHHHHhhhccC--CcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 34456788999999998876431 33358899999999999999999999999999988753
No 426
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=32.67 E-value=1.7e+02 Score=26.16 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 285 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~ 285 (372)
++++.+-.+|+--|++ .|+.+.+.+.-|.+++.+|+|++|+..|+....= ..+.-.+.++ ++.|+
T Consensus 24 ~d~~D~e~lLdALrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~~~~p~~kAL--~A~CL 88 (153)
T TIGR02561 24 ADPYDAQAMLDALRVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------AGAPPYGKAL--LALCL 88 (153)
T ss_pred CCHHHHHHHHHHHHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc------CCCchHHHHH--HHHHH
Confidence 3555666667666654 3678888899999999999999998877653321 1122234444 66777
Q ss_pred HhCCCc
Q 017388 286 EIGSKP 291 (372)
Q Consensus 286 ~~~~~~ 291 (372)
...++.
T Consensus 89 ~al~Dp 94 (153)
T TIGR02561 89 NAKGDA 94 (153)
T ss_pred HhcCCh
Confidence 777764
No 427
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.58 E-value=1.8e+02 Score=33.95 Aligned_cols=94 Identities=11% Similarity=0.053 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------------HhcCCCChhHH
Q 017388 213 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE-----------------RMVEPDSRHIA 275 (372)
Q Consensus 213 e~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~-----------------~l~~~~~r~iA 275 (372)
.|++-|+.+|.... -|..|+......|.|..|+..-++|=.++. ++.|-+--.-|
T Consensus 1208 ~~y~aAkl~y~~vS--------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivha 1279 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNVS--------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHA 1279 (1666)
T ss_pred hhhHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEeh
Confidence 36888888886543 356677777777889999998888765542 22333322335
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 017388 276 ELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLN 314 (372)
Q Consensus 276 e~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~l~~ 314 (372)
+-+--|-.-|...|-|++-|..++.+|.+-+++++.-++
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTE 1318 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHH
Confidence 667778888999999999999999999999999887653
No 428
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.53 E-value=2e+02 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhcC
Q 017388 348 LTDKEAEIETLSGLCGDLEKKASP 371 (372)
Q Consensus 348 ~~~~~~Ei~el~~ll~dl~~Kied 371 (372)
...-.++|..|+..+.-|..||.+
T Consensus 27 v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 27 VTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666654
No 429
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.41 E-value=5.7e+02 Score=26.24 Aligned_cols=117 Identities=18% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCC
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~ 144 (372)
....-..+++.++..++|..|...|++++..... ..-..--..|..+-+++..-
T Consensus 129 ~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~---~~~~~~~~~~~~l~~~y~~W----------------------- 182 (380)
T TIGR02710 129 EGNTEQGYARRAINAFDYLFAHARLETLLRRLLS---AVNHTFYEAMIKLTRAYLHW----------------------- 182 (380)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccC---hhhhhHHHHHHHHHHHHHHH-----------------------
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHH--------
Q 017388 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLD-------- 216 (372)
Q Consensus 145 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le-------- 216 (372)
|.-++..||+.|+
T Consensus 183 -----------------------------------------------------------D~fd~~~A~~~L~~~~~~~~~ 203 (380)
T TIGR02710 183 -----------------------------------------------------------DRFEHEEALDYLNDPLPERLA 203 (380)
T ss_pred -----------------------------------------------------------HccCHHHHHHHHhhccchhhh
Q ss_pred -------HHHHHHHHhcCC-Ccc------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 017388 217 -------VARAIAEKHWGD-SME------------------KVDILSALAEVALEREDIETSLSDYQKALTILERM 266 (372)
Q Consensus 217 -------~Ar~I~ek~~~~-~~~------------------~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l 266 (372)
..+....+.... .+. +...+..=|..-..+|+|+.|+..+-+||++.-++
T Consensus 204 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q~ 279 (380)
T TIGR02710 204 LYQVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQI 279 (380)
T ss_pred hhhhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
No 430
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=32.39 E-value=4.5e+02 Score=25.03 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCC
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 289 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~ 289 (372)
-..|-.+..+-..+...-.+..+|-+++.++-..- .++.+..++.+||.+....+
T Consensus 39 k~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E--~~~~Ls~als~laev~~~i~ 93 (234)
T cd07665 39 RKLHAVVETLVNHRKELALNTALFAKSLAMLGSSE--DNTALSRALSQLAEVEEKIE 93 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHH
Confidence 33444444455555555566666767666655442 45566666666665554443
No 431
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=31.94 E-value=1.1e+02 Score=27.60 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=39.6
Q ss_pred CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 017388 229 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHI 274 (372)
Q Consensus 229 ~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~i 274 (372)
.+....++.+|-.=|...|+|.-|+...++||.-..+..|.+||.+
T Consensus 136 ~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 136 IPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 4667889999999999999999999999999999999999999864
No 432
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=31.71 E-value=2.3e+02 Score=24.08 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCC
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGEL 103 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~ 103 (372)
.+.+..-+..++.++..|||+.+-..+.+|..|...+.+..
T Consensus 28 ydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~L 68 (124)
T TIGR00208 28 YNGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTL 68 (124)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677888899999999999999999999999988776543
No 433
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=31.63 E-value=2.1e+02 Score=29.77 Aligned_cols=54 Identities=19% Similarity=0.095 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYG 115 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG 115 (372)
++......+..|.+++..|+|.+|+..|+..|-...=.-=+...+..++.-.+.
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~ 253 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIE 253 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHH
Confidence 566777889999999999999999999999998854333344445555444333
No 434
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=31.27 E-value=2.7e+02 Score=23.33 Aligned_cols=57 Identities=19% Similarity=0.056 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh------------------------hCCCChhHHHHHHHHHHHHHH
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSH------------------------YGELALECVNAYYQYGRALLY 120 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~------------------------~Ge~~pe~A~~y~~yG~ALl~ 120 (372)
.|...+-.|-++.+.|+|++|-.+.++|=+.+.+. |+..|.-++.++..+.+=+++
T Consensus 18 ~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~~l~eAH~~QT~Liq~eA~G~k~~~slllvHAQDHLMtt~~~~~l~ke~i~ 97 (105)
T COG1447 18 NARSKAYEALKAAKEGDFEEAEELIQEANDALNEAHHVQTKLIQKEASGEKIEVSLLLVHAQDHLMTTITEKDLIKELIE 97 (105)
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccceeeeeeehhHHHHHHHHHHHHHHHHHH
Confidence 36677778889999999999999998887765433 566666677777766666665
Q ss_pred h
Q 017388 121 K 121 (372)
Q Consensus 121 ~ 121 (372)
+
T Consensus 98 l 98 (105)
T COG1447 98 L 98 (105)
T ss_pred H
Confidence 4
No 435
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=30.74 E-value=1.5e+02 Score=25.89 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAY 111 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y 111 (372)
.+..+|..++..+++-.|+-+|++|+.+..+..-....+.-+.+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll 46 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLL 46 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 45678899999999999999999999998777433334444433
No 436
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=30.53 E-value=64 Score=30.18 Aligned_cols=51 Identities=29% Similarity=0.383 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhC
Q 017388 232 KVDILSALAEVALE---REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 288 (372)
Q Consensus 232 ~A~~~~~LGev~~e---~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~ 288 (372)
..+-|.-|+++..- .+--+.+++-|+.|-+|...-+||.||. +||+++.|.
T Consensus 126 KGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA~teLpPT~Pi------rLGLALNfS 179 (268)
T COG5040 126 KGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIATTELPPTHPI------RLGLALNFS 179 (268)
T ss_pred cchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHhhccCCCCCch------hhhheecce
Confidence 46667777776542 2335788999999999999999999983 667666543
No 437
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=30.39 E-value=52 Score=30.72 Aligned_cols=61 Identities=13% Similarity=0.011 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017388 212 WKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 287 (372)
Q Consensus 212 we~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~ 287 (372)
...|.+|..++ |.....|+-||-++...+++=.|+=+|-+||....- - ..+..||...+..
T Consensus 2 ~~~Y~~A~~l~-------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P-------f-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 2 ERYYRKAIRLL-------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP-------F-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH--------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCCCCcccchhhhhccccchHHHHHHHHHHHhcCCC-------c-HHHHHHHHHHHHH
Confidence 34455555543 677899999999999999999999999999965422 1 3556666666666
No 438
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=30.12 E-value=38 Score=34.28 Aligned_cols=65 Identities=22% Similarity=0.177 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 233 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 233 A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
-.++.+++.+.+..++|..|+-.-..+|. ..|.-+.+||+.+.+|....++++|+..+..|....
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~--------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~ 339 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALR--------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKA 339 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccc--------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccC
Confidence 45677899999999999998887776666 566778999999999999999999999999986554
No 439
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.92 E-value=75 Score=30.69 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
|..-|-+.+..| +..-++-+..|+.+|+-....|+++.|..-|++.|+|..
T Consensus 10 D~~aaaely~qa-------l~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 10 DAEAAAELYNQA-------LELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred ChHHHHHHHHHH-------hhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 445554544444 444577889999999999999999999999999998864
No 440
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=29.68 E-value=1.8e+02 Score=23.38 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccccchhccchhhhHHHHHHHHHHhhHHHHHhhh
Q 017388 295 IPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKA 369 (372)
Q Consensus 295 i~~~ekAl~i~~~rl~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~el~~ll~dl~~Ki 369 (372)
|...+..|.-|+.++.....++....-+ ++.-..++.|+..|++.+...+.++
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs----------------------~e~R~~lE~E~~~l~~~l~~~E~eL 59 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELS----------------------PEARRSLEKELNELKEKLENNEKEL 59 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCC----------------------hHHHHHHHHHHHHHHHHhhccHHHH
Confidence 5566677777888888887777654321 1234678889999999888777665
No 441
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.59 E-value=2e+02 Score=24.82 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHhhHHHHHhhhcCC
Q 017388 347 LLTDKEAEIETLSGLCGDLEKKASPI 372 (372)
Q Consensus 347 ~~~~~~~Ei~el~~ll~dl~~Kied~ 372 (372)
....+..+|+.|..++..|+.||..|
T Consensus 97 dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 97 DVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999988654
No 442
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.53 E-value=1.8e+02 Score=31.20 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHHHHHh---cCCCCh--hH-----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Q 017388 248 DIETSLSDYQKALTILERM---VEPDSR--HI-----------AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 311 (372)
Q Consensus 248 ~y~~Al~~y~~AL~I~~~l---~~~~~r--~i-----------Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~ 311 (372)
++.+=+..|...+++...+ .|-.|- .+ |--.|.|+.+|...++|.+|+..|.+|..-+......
T Consensus 379 rpqdl~RLYd~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~ 458 (593)
T KOG2460|consen 379 RPQDLERLYDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSE 458 (593)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566666666655543 333321 11 2223568888889999999999999998766655544
Q ss_pred H
Q 017388 312 L 312 (372)
Q Consensus 312 l 312 (372)
+
T Consensus 459 l 459 (593)
T KOG2460|consen 459 L 459 (593)
T ss_pred h
Confidence 4
No 443
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=29.48 E-value=1.8e+02 Score=22.60 Aligned_cols=37 Identities=35% Similarity=0.548 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 017388 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEI 95 (372)
Q Consensus 59 ~~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel 95 (372)
-...++.|..++.-|+-++..||+..|..+|+=|-.+
T Consensus 28 a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~Gw 64 (75)
T PF04010_consen 28 AEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGW 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566888999999999999999999988777654443
No 444
>PF13041 PPR_2: PPR repeat family
Probab=29.40 E-value=1.2e+02 Score=20.74 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKAL 260 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL 260 (372)
-+|+.|=..+...|++++|+..|++-.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468888899999999999999999766
No 445
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=28.84 E-value=3.6e+02 Score=22.83 Aligned_cols=76 Identities=13% Similarity=0.060 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHH
Q 017388 235 ILSALAEVALEREDIETSLSDYQKALTILERMVEP----DSRHIAELNFRICLCLEIGSK------PQEAIPYCQKAISV 304 (372)
Q Consensus 235 ~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~----~~r~iAe~~~~Lg~a~~~~~~------~~eAi~~~ekAl~i 304 (372)
.+...+...++.++|+.+-....+|..|...+... ....+|.-++. .|.+..+ ...-.+.+..++.+
T Consensus 33 ~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~---LY~y~~~~L~~An~~~d~~~l~ev~~~ 109 (124)
T TIGR00208 33 KFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGA---LYDYMYRRLVQANIKNDTSKLAEVEGY 109 (124)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHH---HHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 35667788899999999999999999999876432 12345544433 3333321 12224456666666
Q ss_pred HHHHHHHHH
Q 017388 305 CKSRVQRLL 313 (372)
Q Consensus 305 ~~~rl~~l~ 313 (372)
+......++
T Consensus 110 l~~Lr~aW~ 118 (124)
T TIGR00208 110 VRDFRDAWK 118 (124)
T ss_pred HHHHHHHHH
Confidence 555544443
No 446
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=28.75 E-value=1.9e+02 Score=21.79 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHH
Q 017388 275 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLL 313 (372)
Q Consensus 275 Ae~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~l~ 313 (372)
|+.-..|+..-....+|+.||..+.. ...--.|+.+++
T Consensus 7 aeirl~~arLrqeH~D~DaaInAmi~-~~cD~L~iqRmK 44 (67)
T COG5481 7 AEIRLTLARLRQEHADFDAAINAMIA-TGCDALRIQRMK 44 (67)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH-hCCcHHHHHHHH
Confidence 45555566666666788888887765 333333555553
No 447
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=28.25 E-value=1.8e+02 Score=23.74 Aligned_cols=35 Identities=29% Similarity=0.249 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSH 99 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~ 99 (372)
.|+.+.-.+-.....|+|++|-.++.+|=+.+.+-
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l~~A 47 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEADEELLKA 47 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 47778888888899999999999999998876554
No 448
>PRK10869 recombination and repair protein; Provisional
Probab=28.22 E-value=3.7e+02 Score=28.80 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=9.4
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEK 224 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek 224 (372)
..+..+.+.++.+..++..
T Consensus 215 ~~L~n~e~i~~~~~~~~~~ 233 (553)
T PRK10869 215 KRLANSGQLLTTSQNALQL 233 (553)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544443
No 449
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=28.14 E-value=1.3e+02 Score=24.98 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 017388 231 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP 269 (372)
Q Consensus 231 ~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~ 269 (372)
..|..+...|.++...|+.++|--.|.+.+.|. ..++.
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~-~ki~~ 73 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV-EKIPK 73 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCHCC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhc
Confidence 356777788999999999999999999999999 65553
No 450
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.04 E-value=6.7e+02 Score=25.73 Aligned_cols=69 Identities=16% Similarity=0.016 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh-------------------------cCCCChhHHHHHHHHHHHHHhCCCchH
Q 017388 239 LAEVALEREDIETSLSDYQKALTILERM-------------------------VEPDSRHIAELNFRICLCLEIGSKPQE 293 (372)
Q Consensus 239 LGev~~e~~~y~~Al~~y~~AL~I~~~l-------------------------~~~~~r~iAe~~~~Lg~a~~~~~~~~e 293 (372)
-|.+++-.++|.+....|..+=.-.++- +++..-.....|+-+|+-|....+++.
T Consensus 64 ~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ 143 (449)
T COG3014 64 NGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDSAK 143 (449)
T ss_pred hhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcchhh
Confidence 3777777777777766665543322221 222333456778889999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 017388 294 AIPYCQKAISVCKS 307 (372)
Q Consensus 294 Ai~~~ekAl~i~~~ 307 (372)
|.--|++|....++
T Consensus 144 ArVEfnRan~rQ~~ 157 (449)
T COG3014 144 ARVEFNRANERQRR 157 (449)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999877655
No 451
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.69 E-value=48 Score=37.84 Aligned_cols=68 Identities=24% Similarity=0.160 Sum_probs=45.3
Q ss_pred ccccCCCCCCCCccCCchhhhHHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 017388 42 STCNNNCETSGAIADGEREKTVEFADELMEKGT-------NALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQY 114 (372)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~~G~-------~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~y 114 (372)
++|--+.+.++.....+-..++++++. ..+|+ -++-.|++..|.+.|+.|++++.. +.=|+||
T Consensus 215 ss~~~tp~~s~~qasl~~~st~~rskk-ksLGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~---------t~DyLWl 284 (1235)
T KOG1953|consen 215 SSSRPTPTRSPSQASLSVNSTTERSKK-KSLGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKA---------TGDYLWL 284 (1235)
T ss_pred CCCCCCCccchhhhccchHHHHHHHHH-hhHHHHHHhhcceeeecCCchHHHHHHHHHHHHHHh---------hhhheee
Confidence 777777777665555555555555543 23443 345568899999999999999643 3357777
Q ss_pred HHHHH
Q 017388 115 GRALL 119 (372)
Q Consensus 115 G~ALl 119 (372)
|-||=
T Consensus 285 g~Ald 289 (1235)
T KOG1953|consen 285 GLALD 289 (1235)
T ss_pred hhhcc
Confidence 76653
No 452
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=27.53 E-value=87 Score=30.84 Aligned_cols=58 Identities=19% Similarity=0.056 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017388 207 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 265 (372)
Q Consensus 207 dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~ 265 (372)
....|.++++.|+..-++..+ ...+.-|.+..|-.|.-..+|+-|..+|.+|+.++..
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D-~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGD-RSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCC-cceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 567788999999987776643 4556778888999999999999999999999998653
No 453
>PRK09039 hypothetical protein; Validated
Probab=27.47 E-value=6.4e+02 Score=25.25 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017388 248 DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVK 317 (372)
Q Consensus 248 ~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~l~~~~~ 317 (372)
.-...+..+...|.-.+..+.+.||.+....-+|.-.-......+.+|...++-..-.+.+|..|+..|.
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677888888888888888888888888776666555555555555555444455555544444
No 454
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=27.05 E-value=86 Score=31.58 Aligned_cols=58 Identities=24% Similarity=0.184 Sum_probs=42.0
Q ss_pred ChHHHHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017388 206 SDLDLAWKM-----LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 263 (372)
Q Consensus 206 ~dl~~Awe~-----Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~ 263 (372)
..+..|.++ ++.|..+|+..+...+...+++..+|.+.-...+.-+|=.+|.+||.|-
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 344445544 5777777777776667777888888888877788888888888888774
No 455
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=26.98 E-value=1.8e+02 Score=24.17 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSH 99 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~ 99 (372)
.|+.+.-.+-.+.+.|||++|-.++.+|=+.+.+-
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~~A 53 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQSNEELLEA 53 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 46777778888889999999999999998876543
No 456
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=26.70 E-value=6.1e+02 Score=25.15 Aligned_cols=92 Identities=15% Similarity=0.058 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHH
Q 017388 215 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 294 (372)
Q Consensus 215 Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eA 294 (372)
+-.|..|.+..+...+.-.++...|-.+|...|-...|...| ..|+|+.-.+. .++ | .+-.-+...+.+..+
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~-~~L~iK~IQ~D----TL~--h-~~~~r~~~~~~~~~~ 270 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHY-ESLDIKNIQLD----TLG--H-LILDRLSTLGPFKSA 270 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH-HhcChHHHHHH----HhH--H-HHHHHHhccCccccc
Confidence 445556666665556777888999999999999999999999 66777664431 111 1 111112334444444
Q ss_pred H-HHHHHHHHHHHHHHHHHHH
Q 017388 295 I-PYCQKAISVCKSRVQRLLN 314 (372)
Q Consensus 295 i-~~~ekAl~i~~~rl~~l~~ 314 (372)
. ..+..++.++.........
T Consensus 271 ~~~~~~~~~~fy~~~~~~~~e 291 (365)
T PF09797_consen 271 PENLLENALKFYDNSEKETPE 291 (365)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 4 6666666666554444433
No 457
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.42 E-value=1e+02 Score=31.04 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 017388 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRV 97 (372)
Q Consensus 62 ~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~ 97 (372)
.+..|.+|...+.-....++|++|..+|+.||+.+.
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999764
No 458
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=26.41 E-value=5.3e+02 Score=25.72 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILERMV 267 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~ 267 (372)
.|.+|..+|.+..+.++|-+||..|+.|+...+...
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 577899999999999999999999999999765543
No 459
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=26.41 E-value=1.6e+02 Score=17.80 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKAL 260 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL 260 (372)
.+|+.+-..+...|+++.|...|..-.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 468889999999999999988887644
No 460
>PRK04406 hypothetical protein; Provisional
Probab=26.31 E-value=1.6e+02 Score=23.04 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHhhHHHHHhhhc
Q 017388 346 KLLTDKEAEIETLSGLCGDLEKKAS 370 (372)
Q Consensus 346 ~~~~~~~~Ei~el~~ll~dl~~Kie 370 (372)
+....-+++|..|+.-|.-|..||.
T Consensus 32 ~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 32 DALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777766664
No 461
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=26.22 E-value=87 Score=26.81 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017388 236 LSALAEVALEREDIETSLSDYQKALTIL 263 (372)
Q Consensus 236 ~~~LGev~~e~~~y~~Al~~y~~AL~I~ 263 (372)
...||+.++..|++++|+.+|-+||.++
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~ 93 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVC 93 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 4579999999999999999999888765
No 462
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=26.15 E-value=1.5e+02 Score=29.17 Aligned_cols=32 Identities=9% Similarity=-0.034 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHhCC-----CchHHHHHHHHHHH
Q 017388 272 RHIAELNFRICLCLEIGS-----KPQEAIPYCQKAIS 303 (372)
Q Consensus 272 r~iAe~~~~Lg~a~~~~~-----~~~eAi~~~ekAl~ 303 (372)
....-++.-++.+|.+.+ ++.+|+.++...+.
T Consensus 173 ~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 173 AWKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 345556666888888888 55566666555543
No 463
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=26.13 E-value=2.6e+02 Score=28.34 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccccchhccchhhhHH
Q 017388 272 RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDK 351 (372)
Q Consensus 272 r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~rl~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 351 (372)
|.|..=+..|...|.....|..-+..+++...-+...|..++..|.... ..+
T Consensus 315 P~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve----------------------------~~~ 366 (388)
T PF04912_consen 315 PSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVE----------------------------EKF 366 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHH
Confidence 4555555556666655555555555555555555555555555555432 246
Q ss_pred HHHHHHHHhhHHHHHhhhcCC
Q 017388 352 EAEIETLSGLCGDLEKKASPI 372 (372)
Q Consensus 352 ~~Ei~el~~ll~dl~~Kied~ 372 (372)
...++-|++-+..|+.||..|
T Consensus 367 ~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 367 KENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 677788888888888888764
No 464
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=26.02 E-value=1.9e+02 Score=23.74 Aligned_cols=35 Identities=17% Similarity=0.019 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSH 99 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~ 99 (372)
.|+.+.-.+-+..+.|||++|-.++.+|=+.+.+-
T Consensus 16 ~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~~A 50 (99)
T TIGR00823 16 DARSKALEALKAAKAGDFAKARALVEQAGMCLNEA 50 (99)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 46777788888899999999999999988876543
No 465
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=25.76 E-value=5.1e+02 Score=26.56 Aligned_cols=108 Identities=21% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcCcccCCCCccCCCCCCCCCcccccccc
Q 017388 74 TNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAV 153 (372)
Q Consensus 74 ~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~vLg~~~~~~~e~~~~~~~d~~~~~~~ 153 (372)
.+....++-.+=+..-..||+| .|+||.+|.+++
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLA-------------------------------------- 225 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEI--------NNECATAYVLLA-------------------------------------- 225 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhh--------------------------------------
Q ss_pred CCCCCcccCCCchhhcCCCCCcCcccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCCccHH
Q 017388 154 NGESSTASVSSSAEQHGSSNNQDEAADDVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKV 233 (372)
Q Consensus 154 ~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ed~e~~~~e~~~~~~ed~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A 233 (372)
+|+......|-.+|..|+..-+-... +.+..
T Consensus 226 ------------------------------------------------EEEa~Ti~~AE~l~k~ALka~e~~yr-~sqq~ 256 (556)
T KOG3807|consen 226 ------------------------------------------------EEEATTIVDAERLFKQALKAGETIYR-QSQQC 256 (556)
T ss_pred ------------------------------------------------hhhhhhHHHHHHHHHHHHHHHHHHHh-hHHHH
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHH
Q 017388 234 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 299 (372)
Q Consensus 234 ~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~e 299 (372)
+-|...++....+ +--.+.-+-.+|++|-+.+|+..+|++.|+
T Consensus 257 qh~~~~~da~~rR-----------------------Dtnvl~YIKRRLAMCARklGrlrEA~K~~R 299 (556)
T KOG3807|consen 257 QHQSPQHEAQLRR-----------------------DTNVLVYIKRRLAMCARKLGRLREAVKIMR 299 (556)
T ss_pred hhhccchhhhhhc-----------------------ccchhhHHHHHHHHHHHHhhhHHHHHHHHH
No 466
>KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair]
Probab=25.57 E-value=98 Score=32.97 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 017388 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGR 116 (372)
Q Consensus 68 ~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ 116 (372)
+-+.+|..+++.|+-.+|.++|++++.+ .|++|.-+..|=+
T Consensus 98 ~n~~~a~~ll~~G~~~~A~~~fqr~VdI--------T~~ma~~lI~~~r 138 (556)
T KOG2518|consen 98 KNLDAAEQLLAEGKESNARECFQRCVDI--------TPEMAHKLIQYLR 138 (556)
T ss_pred HhHHHHHHHHHcCCHHHHHHHHHHhccC--------cHHHHHHHHHHHH
Confidence 4456888999999999999999999999 6888887776654
No 467
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=25.47 E-value=2e+02 Score=23.52 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSH 99 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~ 99 (372)
.|+.+.-.+-.+.+.|+|++|-.++.+|=+.+.+-
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~~A 48 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEANDSLNEA 48 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 46777778888899999999999999998876543
No 468
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=25.24 E-value=1.5e+02 Score=27.67 Aligned_cols=60 Identities=13% Similarity=-0.006 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhcC
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD 127 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ar~es~ 127 (372)
++.+.-++.+| .++...|-++|+.+|-++|++. .+.+.-..+++..++..++.+++.+.+
T Consensus 138 l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~----~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 138 LETAELQYALA-TYYTKRDPEKTIQLLLRALELS----NPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44565566666 5777999999999999999984 333334466788888888877766544
No 469
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=25.12 E-value=3.8e+02 Score=23.38 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 017388 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSH 99 (372)
Q Consensus 63 ~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~ 99 (372)
-+.+..-+.+++.++..++|.++...+.+|..|..++
T Consensus 28 yeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL 64 (132)
T COG1516 28 YEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITEL 64 (132)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3467788889999999999999999999999998765
No 470
>PF15469 Sec5: Exocyst complex component Sec5
Probab=25.10 E-value=1.7e+02 Score=26.16 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHh
Q 017388 63 VEFADELMEKG---TNALKESDYGEAAECFSRALEIRVSH 99 (372)
Q Consensus 63 ~~~a~~L~~~G---~~~~~~gdy~eAv~~~~~Alel~~~~ 99 (372)
+.+-.-|+++. ..++..|+|+.++..|.+|..++...
T Consensus 80 l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 80 LQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 44566666666 45678999999999999999987554
No 471
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=24.52 E-value=1.8e+02 Score=27.51 Aligned_cols=40 Identities=18% Similarity=0.073 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 017388 82 YGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (372)
Q Consensus 82 y~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ 121 (372)
.+.|..+|++|+++.....+.+||---.+.++|..-|++.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei 181 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEI 181 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999998777765
No 472
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.16 E-value=1.3e+02 Score=19.84 Aligned_cols=28 Identities=18% Similarity=0.470 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 017388 80 SDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGR 116 (372)
Q Consensus 80 gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ 116 (372)
+.|+.|..+|++.+.. ||. ...+..|++
T Consensus 1 kE~dRAR~IyeR~v~~--------hp~-~k~WikyAk 28 (32)
T PF02184_consen 1 KEFDRARSIYERFVLV--------HPE-VKNWIKYAK 28 (32)
T ss_pred ChHHHHHHHHHHHHHh--------CCC-chHHHHHHH
Confidence 3688999999999887 666 445666554
No 473
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=23.98 E-value=2.5e+02 Score=24.88 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
Q 017388 59 REKTVEFADELMEKGTNALKES-DYGEAAECFSRALEIR 96 (372)
Q Consensus 59 ~~~~~~~a~~L~~~G~~~~~~g-dy~eAv~~~~~Alel~ 96 (372)
.+........-+.+|-.++..| ++.+|+.+|..|+.++
T Consensus 83 ~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc 121 (148)
T TIGR00985 83 PSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVY 121 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC
Confidence 4444455777889999999999 9999999999999874
No 474
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=23.94 E-value=2.3e+02 Score=28.79 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=30.2
Q ss_pred CChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 017388 270 DSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 304 (372)
Q Consensus 270 ~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i 304 (372)
+-..+|.-|..++..+...|.+++.|..|++||..
T Consensus 135 ~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 135 DAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred hHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 44567888889999999999999999999999855
No 475
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.88 E-value=5.1e+02 Score=22.93 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHhhHHHHHhh
Q 017388 348 LTDKEAEIETLSGLCGDLEKK 368 (372)
Q Consensus 348 ~~~~~~Ei~el~~ll~dl~~K 368 (372)
+..++.+|.+++.-+..+..+
T Consensus 147 i~~l~~~i~~~e~~~~~~~~~ 167 (218)
T cd07596 147 VEELEEELEEAESALEEARKR 167 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444433
No 476
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=23.72 E-value=1.1e+03 Score=26.89 Aligned_cols=79 Identities=18% Similarity=0.037 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017388 206 SDLDLAWKMLDVARAIAEKHWGD-SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 284 (372)
Q Consensus 206 ~dl~~Awe~Le~Ar~I~ek~~~~-~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a 284 (372)
++++.|..+.+.+.+.. ... ...-+.++..+|.+.+-.|+|++|+...+.+.++.+++-. -..-+.+++..+.+
T Consensus 472 ~~~e~a~~lar~al~~L---~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~--~~l~~~~~~~~s~i 546 (894)
T COG2909 472 GDPEEAEDLARLALVQL---PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV--YHLALWSLLQQSEI 546 (894)
T ss_pred CCHHHHHHHHHHHHHhc---ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHH
Confidence 46666655555554432 221 2345789999999999999999999999999999888742 22345677778888
Q ss_pred HHhCC
Q 017388 285 LEIGS 289 (372)
Q Consensus 285 ~~~~~ 289 (372)
+..+|
T Consensus 547 l~~qG 551 (894)
T COG2909 547 LEAQG 551 (894)
T ss_pred HHHhh
Confidence 88888
No 477
>PRK05685 fliS flagellar protein FliS; Validated
Probab=23.68 E-value=4.6e+02 Score=22.35 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC---CC-ChhHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHH
Q 017388 236 LSALAEVALEREDIETSLSDYQKALTILERMVE---PD-SRHIAELNFRICLCLEIGSK------PQEAIPYCQKAISVC 305 (372)
Q Consensus 236 ~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~---~~-~r~iAe~~~~Lg~a~~~~~~------~~eAi~~~ekAl~i~ 305 (372)
+...+...++.++|+.+-....+|..|...+.. .+ ...+|.-++ ..|.+..+ ...-.+.+..++.++
T Consensus 38 ~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~---~LY~y~~~~L~~A~~~~d~~~l~ev~~il 114 (132)
T PRK05685 38 FLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLS---ALYDYMIRRLLEANLRNDVQAIDEVEGLL 114 (132)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455677788999999999999999999988643 22 234454433 33433321 222245555555555
Q ss_pred HHHHHHH
Q 017388 306 KSRVQRL 312 (372)
Q Consensus 306 ~~rl~~l 312 (372)
......+
T Consensus 115 ~~LreaW 121 (132)
T PRK05685 115 REIKEAW 121 (132)
T ss_pred HHHHHHH
Confidence 5544444
No 478
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=23.64 E-value=1.4e+02 Score=27.13 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccccchhccchhhhHHHHHHHHHHhhHHHHHhhhcC
Q 017388 292 QEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKASP 371 (372)
Q Consensus 292 ~eAi~~~ekAl~i~~~rl~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~el~~ll~dl~~Kied 371 (372)
+.+...+......-..||++|++.|+...... ++..+ -|+++....| |+.|+++
T Consensus 97 k~~~~~~ke~~~~s~~~iq~l~k~le~v~~~~-----------------------P~dem--T~ed~~ea~P-~~~k~d~ 150 (172)
T KOG3366|consen 97 KAAVKEIKEYESLSKKRIQELEKELEKVKSAR-----------------------PFDEM--TMEDLNEAFP-IEKKVDD 150 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------------------Ccccc--cHHHHHHhCc-hhhcccc
Confidence 34445555555666778888888888765411 12333 5788888888 8888877
Q ss_pred C
Q 017388 372 I 372 (372)
Q Consensus 372 ~ 372 (372)
|
T Consensus 151 ~ 151 (172)
T KOG3366|consen 151 M 151 (172)
T ss_pred c
Confidence 5
No 479
>PF13041 PPR_2: PPR repeat family
Probab=23.44 E-value=1.6e+02 Score=20.07 Aligned_cols=27 Identities=11% Similarity=-0.073 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHH
Q 017388 276 ELNFRICLCLEIGSKPQEAIPYCQKAI 302 (372)
Q Consensus 276 e~~~~Lg~a~~~~~~~~eAi~~~ekAl 302 (372)
.+|..|=.+|...+++++|...|++-.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467778889999999999999887654
No 480
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.87 E-value=2.9e+02 Score=24.41 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017388 293 EAIPYCQKAISVCKSRVQRLLNEVKSLGE 321 (372)
Q Consensus 293 eAi~~~ekAl~i~~~rl~~l~~~~~~~~~ 321 (372)
.-+.-++.-+..++..+..|+.++..+..
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555556666666666666544
No 481
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=22.72 E-value=3.5e+02 Score=24.36 Aligned_cols=65 Identities=15% Similarity=0.031 Sum_probs=51.4
Q ss_pred ccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 017388 230 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 302 (372)
Q Consensus 230 ~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl 302 (372)
..+...+..+..+.+..++++++...+...--++ |..++...--|..+-..+++.+|+..|+...
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR--------PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4567788889999999999999887776544443 3446777888999999999999999998743
No 482
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=22.34 E-value=2.3e+02 Score=28.09 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017388 291 PQEAIPYCQKAISVCKSRVQRLLNEVKSLGE 321 (372)
Q Consensus 291 ~~eAi~~~ekAl~i~~~rl~~l~~~~~~~~~ 321 (372)
|..+-..-+.|++. -..|..++.++++++.
T Consensus 40 yQ~~EQAr~~A~~f-A~~ld~~~~kl~~Ms~ 69 (301)
T PF06120_consen 40 YQNAEQARQEAIEF-ADSLDELKEKLKEMSS 69 (301)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHhcCH
Confidence 45555556666665 4567778888887754
No 483
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=22.16 E-value=53 Score=29.08 Aligned_cols=80 Identities=11% Similarity=0.183 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH----hcCCCC--------hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 017388 238 ALAEVALEREDIETSLSDYQKALTILER----MVEPDS--------RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 305 (372)
Q Consensus 238 ~LGev~~e~~~y~~Al~~y~~AL~I~~~----l~~~~~--------r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~ 305 (372)
.|+.+...+.+|+.++..+. .+.+... +.|-.+ ...-..+.-||.=|.--...++|..||++=++.+
T Consensus 35 Sl~~L~~aq~k~~~~~~aln-~~~~~~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYyVEK~~e~akdyfkRKve~l 113 (153)
T KOG3048|consen 35 SLNALKGAQTKYEESIAALN-DVQAANEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYYVEKDAEDAKDYFKRKVEYL 113 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hcccCCCCCeEEEecccceeccceeccccceeEeccCceEEeechHHHHHHHHHHHHHH
Confidence 34555556677888777776 4443321 111100 0011222346677777777799999999999988
Q ss_pred HHHHHHHHHHHHh
Q 017388 306 KSRVQRLLNEVKS 318 (372)
Q Consensus 306 ~~rl~~l~~~~~~ 318 (372)
.+.+..+...++.
T Consensus 114 ~kq~e~i~~i~~e 126 (153)
T KOG3048|consen 114 TKQIEQIEGILKE 126 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776654
No 484
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=22.03 E-value=4.1e+02 Score=24.91 Aligned_cols=59 Identities=15% Similarity=-0.011 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHHhhhh
Q 017388 66 ADELMEKGTNALKES-DYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKAQE 124 (372)
Q Consensus 66 a~~L~~~G~~~~~~g-dy~eAv~~~~~Alel~~~~~-Ge~~pe~A~~y~~yG~ALl~~ar~ 124 (372)
...+....+.++..| .|..|...|+.+|+-+...+ ++..|.++.++..+|.++.++...
T Consensus 18 l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~ 78 (215)
T cd07604 18 LQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAAL 78 (215)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443 45779999999999877555 455568999999999999998755
No 485
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=21.97 E-value=1.1e+02 Score=30.54 Aligned_cols=37 Identities=27% Similarity=0.219 Sum_probs=31.0
Q ss_pred ChhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 017388 271 SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 307 (372)
Q Consensus 271 ~r~iAe~~~~Lg~a~~~~~~~~eAi~~~ekAl~i~~~ 307 (372)
++.|+..+..|+..|...|.-.--+.+|++|+.+++.
T Consensus 3 N~~I~~~L~~la~l~el~gen~~k~~ay~~Aa~~i~~ 39 (334)
T smart00483 3 NRGIIDALEILAENYEVFGENKRKCSYFRKAASVLKS 39 (334)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 5679999999999999888666678899999887665
No 486
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=21.69 E-value=3.2e+02 Score=21.86 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccccchhccchhhhHHHHHHHHHHhhHHHHHhhhc
Q 017388 291 PQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKAS 370 (372)
Q Consensus 291 ~~eAi~~~ekAl~i~~~rl~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Ei~el~~ll~dl~~Kie 370 (372)
+.....-++.+|.-++.-|..|...+.-.... +..+.--..||..=+..+..++.+|.
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~n----------------------p~kF~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRIVEKN----------------------PSKFNLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------------HHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------ccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 55677777888888888888887777765331 01222335667777777777776665
Q ss_pred C
Q 017388 371 P 371 (372)
Q Consensus 371 d 371 (372)
.
T Consensus 95 ~ 95 (97)
T PF09177_consen 95 Q 95 (97)
T ss_dssp H
T ss_pred h
Confidence 4
No 487
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=21.51 E-value=4.9e+02 Score=28.30 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 017388 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (372)
Q Consensus 64 ~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~~yG~ALl~~ 121 (372)
+.+...+..|.-.+..+....|+..|++++.- .|.-..+|-++..+|+..
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkR 421 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKR 421 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhh
Confidence 45667777888888899999999999999987 577788888888888754
No 488
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=20.93 E-value=5e+02 Score=24.55 Aligned_cols=44 Identities=16% Similarity=0.008 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHHhhhh
Q 017388 81 DYGEAAECFSRALEIRVSH-YGELALECVNAYYQYGRALLYKAQE 124 (372)
Q Consensus 81 dy~eAv~~~~~Alel~~~~-~Ge~~pe~A~~y~~yG~ALl~~ar~ 124 (372)
.|..+-..|.++|+-+..+ .....++++.++..+|.++.++...
T Consensus 34 ~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l 78 (215)
T cd07642 34 AHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTAL 78 (215)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999999998874 3446799999999999999988654
No 489
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=20.82 E-value=2.6e+02 Score=23.67 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 017388 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSH 99 (372)
Q Consensus 65 ~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~ 99 (372)
.|..+.-.+-...+.|+|++|-.++.+|=+.+.+-
T Consensus 30 ~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~A 64 (115)
T PRK10454 30 QARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEA 64 (115)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 46777777888888999999999999998876544
No 490
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=20.63 E-value=2e+02 Score=28.93 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=42.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 017388 57 GEREKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYY 112 (372)
Q Consensus 57 ~~~~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~~~~~Ge~~pe~A~~y~ 112 (372)
-++..-.+.|..|...|...-..|..-+|+..|+.|+.| ||++-..|.
T Consensus 10 ~ekd~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI--------~~diEs~~r 57 (366)
T KOG2997|consen 10 YEKDPLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQI--------VPDIESKYR 57 (366)
T ss_pred cccchHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcC--------CchHHHHHH
Confidence 345566788999999999999999999999999999999 788877777
No 491
>PTZ00332 paraflagellar rod protein; Provisional
Probab=20.60 E-value=1.1e+03 Score=25.37 Aligned_cols=54 Identities=9% Similarity=0.069 Sum_probs=37.4
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017388 205 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALT 261 (372)
Q Consensus 205 ~~dl~~Awe~Le~Ar~I~ek~~~~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~ 261 (372)
.|.+++|-+...+-..||++.+. -+++-|-.+|..+-++..|+.=-..++.|-.
T Consensus 207 ~GEM~~AEe~~~~k~ql~Erl~~---Li~Dk~~iI~~~~~e~~~~~~~~~v~k~a~~ 260 (589)
T PTZ00332 207 DGEMQVAEEQMWTKVQLQERLIE---LVADKFRLIGKCEEENKSFSKIHEVQKQANQ 260 (589)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH---HHHhhcchhhhhhhhcccHHHHHHHHHHhhh
Confidence 45677777777777778877654 2567788888888888888774444544443
No 492
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.56 E-value=7.8e+02 Score=29.28 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Q 017388 70 MEKGTNALKESDYGEAAECFSRALEI 95 (372)
Q Consensus 70 ~~~G~~~~~~gdy~eAv~~~~~Alel 95 (372)
+-+|..++..|...+|+.||.+|+.-
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhhc
Confidence 56788899999999999999999875
No 493
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.52 E-value=3.6e+02 Score=27.62 Aligned_cols=33 Identities=15% Similarity=-0.050 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017388 232 KVDILSALAEVALEREDIETSLSDYQKALTILE 264 (372)
Q Consensus 232 ~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~ 264 (372)
..-+|.-+|..|++..+|+.|+..|.+++.-++
T Consensus 124 ~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~ 156 (449)
T COG3014 124 GVLINYYKALNYMLLNDSAKARVEFNRANERQR 156 (449)
T ss_pred HHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHH
Confidence 344566788899999999999999999988875
No 494
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.51 E-value=3.6e+02 Score=30.22 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCHHHHHHHH------HHHHHHHHHhc--------------CCCChhHHHHHHHHHHHHHhCCCchHHHH
Q 017388 237 SALAEVALEREDIETSLSDY------QKALTILERMV--------------EPDSRHIAELNFRICLCLEIGSKPQEAIP 296 (372)
Q Consensus 237 ~~LGev~~e~~~y~~Al~~y------~~AL~I~~~l~--------------~~~~r~iAe~~~~Lg~a~~~~~~~~eAi~ 296 (372)
...++|+---|+|++|...| .-|+.++.++- +.++...-.++.++|-.+..+..+++|.+
T Consensus 738 ~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 738 QQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred HHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777778888888777 34555555531 23556778889999999999999999999
Q ss_pred HHHHHHH
Q 017388 297 YCQKAIS 303 (372)
Q Consensus 297 ~~ekAl~ 303 (372)
||.+.-.
T Consensus 818 yY~~~~~ 824 (1189)
T KOG2041|consen 818 YYSYCGD 824 (1189)
T ss_pred HHHhccc
Confidence 9988643
No 495
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=20.46 E-value=4.7e+02 Score=22.39 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHhC
Q 017388 212 WKMLDVARAIAEKHWG--DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD-SRHIAELNFRICLCLEIG 288 (372)
Q Consensus 212 we~Le~Ar~I~ek~~~--~~~~~A~~~~~LGev~~e~~~y~~Al~~y~~AL~I~~~l~~~~-~r~iAe~~~~Lg~a~~~~ 288 (372)
..+|+.+..-|..... +.+....++...++.. +++...|. .+.... -..+|.-|-..|..+...
T Consensus 46 ~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~-------~L~~~~IG~~~AlfYe~~A~~lE~~ 112 (125)
T smart00777 46 LTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQ-------FLYSKGIGTKLALFYEEWAQLLEAA 112 (125)
T ss_pred HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHH-------HHHHCCcchhhHHHHHHHHHHHHHc
Confidence 4568888888766543 3577888888888764 22333333 222111 245688899999999999
Q ss_pred CCchHHHHHHHH
Q 017388 289 SKPQEAIPYCQK 300 (372)
Q Consensus 289 ~~~~eAi~~~ek 300 (372)
|++.+|.+.|+.
T Consensus 113 g~~~~A~~iy~~ 124 (125)
T smart00777 113 GRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHc
Confidence 999999998874
No 496
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=20.40 E-value=1.9e+02 Score=28.84 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 017388 60 EKTVEFADELMEKGTNALKESDYGEAAECFSRALEIR 96 (372)
Q Consensus 60 ~~~~~~a~~L~~~G~~~~~~gdy~eAv~~~~~Alel~ 96 (372)
...+..|+++..-+.-.+.-.|+..|++.|.+||+++
T Consensus 343 ~~~i~~aQK~aK~AiSAL~feDv~tA~~~L~~AL~lL 379 (380)
T PF04652_consen 343 PEQIAKAQKHAKFAISALNFEDVPTAIKELRKALELL 379 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccC
Done!