Query 017390
Match_columns 372
No_of_seqs 224 out of 796
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 13:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 1.4E-17 4.7E-22 128.6 3.6 55 254-312 6-60 (63)
2 4gat_A Nitrogen regulatory pro 99.6 2.6E-17 8.8E-22 128.0 2.4 57 253-313 7-63 (66)
3 1gnf_A Transcription factor GA 99.6 7.9E-16 2.7E-20 112.1 4.1 43 254-300 3-45 (46)
4 2vut_I AREA, nitrogen regulato 99.6 5.6E-16 1.9E-20 111.4 2.5 42 256-301 2-43 (43)
5 4hc9_A Trans-acting T-cell-spe 99.5 2.2E-15 7.6E-20 127.8 3.9 55 253-311 57-111 (115)
6 2kae_A GATA-type transcription 99.5 1.1E-15 3.9E-20 120.4 -0.2 49 253-304 6-54 (71)
7 4hc9_A Trans-acting T-cell-spe 99.2 3.1E-12 1.1E-16 108.6 2.6 46 253-302 3-48 (115)
8 1dl6_A Transcription factor II 68.4 2.6 8.8E-05 31.3 2.1 42 256-300 12-55 (58)
9 1pft_A TFIIB, PFTFIIBN; N-term 65.7 2.1 7.2E-05 30.2 1.2 40 256-298 6-47 (50)
10 2zjr_Z 50S ribosomal protein L 64.6 1.6 5.5E-05 33.0 0.4 28 251-288 26-53 (60)
11 3cw2_K Translation initiation 59.0 4.3 0.00015 35.2 2.1 33 254-287 102-134 (139)
12 2d74_B Translation initiation 57.1 4.5 0.00015 35.5 2.0 32 256-288 105-136 (148)
13 3k7a_M Transcription initiatio 54.2 7 0.00024 37.6 2.9 43 255-298 21-65 (345)
14 3v2d_5 50S ribosomal protein L 53.5 1.7 5.8E-05 32.9 -1.2 26 253-288 28-53 (60)
15 1nee_A EIF-2-beta, probable tr 51.8 4.5 0.00015 35.1 1.0 30 256-286 103-132 (138)
16 1qyp_A RNA polymerase II; tran 48.0 3.2 0.00011 30.1 -0.4 33 256-288 16-54 (57)
17 1k81_A EIF-2-beta, probable tr 47.9 2.2 7.4E-05 29.1 -1.3 31 257-288 2-32 (36)
18 2yrk_A Zinc finger homeobox pr 44.4 6.3 0.00022 29.6 0.7 20 270-289 6-25 (55)
19 2crr_A Stromal membrane-associ 41.6 20 0.00069 31.0 3.6 49 254-304 28-77 (141)
20 2b0o_E UPLC1; arfgap, structur 40.6 11 0.00036 34.7 1.7 46 254-301 41-87 (301)
21 2owa_A Arfgap-like finger doma 37.0 15 0.00053 31.7 2.1 48 254-303 35-83 (138)
22 1wii_A Hypothetical UPF0222 pr 36.4 17 0.00059 29.1 2.1 35 254-289 22-59 (85)
23 2iqj_A Stromal membrane-associ 35.7 17 0.00056 31.2 2.1 48 254-303 26-74 (134)
24 2olm_A Nucleoporin-like protei 35.0 18 0.00062 31.2 2.2 48 254-303 24-71 (140)
25 2crw_A ARF GAP 3, ADP-ribosyla 33.5 29 0.00098 30.4 3.3 47 254-302 28-75 (149)
26 2g2k_A EIF-5, eukaryotic trans 32.1 7.8 0.00027 34.8 -0.6 32 256-288 97-130 (170)
27 3dwd_A ADP-ribosylation factor 31.1 26 0.00089 30.8 2.6 49 254-304 37-86 (147)
28 2p57_A GTPase-activating prote 30.6 16 0.00056 31.9 1.2 47 254-302 36-83 (144)
29 2e9h_A EIF-5, eukaryotic trans 28.4 11 0.00039 33.4 -0.2 32 256-288 104-137 (157)
30 1pqv_S STP-alpha, transcriptio 25.3 17 0.00056 34.9 0.3 34 255-288 268-307 (309)
31 3po3_S Transcription elongatio 24.8 19 0.00064 32.1 0.5 34 255-288 137-176 (178)
32 3cng_A Nudix hydrolase; struct 22.7 27 0.00092 29.6 1.1 30 255-284 3-32 (189)
33 1tfi_A Transcriptional elongat 22.3 19 0.00064 26.0 0.0 34 255-288 9-48 (50)
34 4bbr_M Transcription initiatio 21.3 23 0.00078 34.3 0.4 33 256-289 22-54 (345)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.68 E-value=1.4e-17 Score=128.60 Aligned_cols=55 Identities=31% Similarity=0.634 Sum_probs=47.6
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCcccccccccc
Q 017390 254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNS 312 (372)
Q Consensus 254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~pt~~~~~~sn~ 312 (372)
....|.||+++.||+||+||.|+ +|||||||+|+++ ..+||+.+.+++|++|+++
T Consensus 6 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~---~~~RP~~~~~~~i~~R~Rk 60 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLH---NINRPLTMKKEGIQTRNRK 60 (63)
T ss_dssp TTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHH---SSCCCGGGCCSSCCCCC--
T ss_pred CCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHc---CCCCCcCcCCCccccccCC
Confidence 44689999999999999999996 9999999999964 4589999999999977654
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.65 E-value=2.6e-17 Score=128.04 Aligned_cols=57 Identities=39% Similarity=0.674 Sum_probs=50.4
Q ss_pred CCCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCccccccccccc
Q 017390 253 GEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSH 313 (372)
Q Consensus 253 ~~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~pt~~~~~~sn~~ 313 (372)
+..+.|.||++++||+||+||.|. +|||||||||++ +...||+.+++.+|++++++.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~---~~~~RP~~~k~~~ik~R~R~~ 63 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKL---HGVVRPLSLKTDVIKKRNRNS 63 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHH---HCSCCCGGGCCSCCCCCCCSC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHH---cCCCCchhhccccccccccCC
Confidence 456899999999999999999995 999999999994 566899999999999876653
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.58 E-value=7.9e-16 Score=112.14 Aligned_cols=43 Identities=42% Similarity=0.862 Sum_probs=37.5
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCC
Q 017390 254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAS 300 (372)
Q Consensus 254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~ 300 (372)
+.+.|.||++++||+||+||.|+ +|||||||||++ +...||+.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~---~~~~RP~~ 45 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKM---NGQNRPLI 45 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHH---TCSCCCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHH---cCCCCCCC
Confidence 56789999999999999999995 999999999995 45667764
No 4
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.57 E-value=5.6e-16 Score=111.45 Aligned_cols=42 Identities=45% Similarity=0.855 Sum_probs=36.6
Q ss_pred cccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCC
Q 017390 256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASS 301 (372)
Q Consensus 256 r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~ 301 (372)
+.|.+|++++||+||+||.|+ +|||||||||++ +...||+++
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~---~~~~RP~~l 43 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKL---HGVVRPLSL 43 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHH---HSSCCCCCC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHH---hCCCCCCCC
Confidence 579999999999999999996 999999999995 445677654
No 5
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.54 E-value=2.2e-15 Score=127.85 Aligned_cols=55 Identities=31% Similarity=0.631 Sum_probs=48.5
Q ss_pred CCCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCccccccccc
Q 017390 253 GEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSN 311 (372)
Q Consensus 253 ~~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~pt~~~~~~sn 311 (372)
.....|+||+++.||+||+||+| ++|||||||||++ +...||+.+++.+|+.|.+
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~---~~~~rp~~~~~~~i~~r~r 111 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKL---HNINRPLTMKKEGIQTRNR 111 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHH---HSSCCCGGGCCSSCCCCC-
T ss_pred cccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHH---hCCCCCccccccchhhccc
Confidence 35689999999999999999999 9999999999995 4566999999999987654
No 6
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.51 E-value=1.1e-15 Score=120.36 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=38.6
Q ss_pred CCCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCcc
Q 017390 253 GEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTF 304 (372)
Q Consensus 253 ~~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~pt~ 304 (372)
.....|.||+++.||+||+|+.+..+|||||||||++ +..+||+.+.+.
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~---~~~~RP~~~~~~ 54 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRK---YNKTRPVTAVNK 54 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHH---HHSCCCTHHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHH---hCCCCCcccchh
Confidence 3557899999999999999654445999999999995 456788876543
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.21 E-value=3.1e-12 Score=108.55 Aligned_cols=46 Identities=41% Similarity=0.897 Sum_probs=37.7
Q ss_pred CCCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCC
Q 017390 253 GEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSP 302 (372)
Q Consensus 253 ~~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~p 302 (372)
...+.|.||+++.||+||+|+.| .+|||||||||+ ++...||+..+
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~K---l~G~nRP~~Kp 48 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHK---MNGQNRPLIKP 48 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH---HHSSCCCCSSC
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhh---hcccccccccc
Confidence 35689999999999999999999 899999999999 45566776543
No 8
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=68.41 E-value=2.6 Score=31.28 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=29.6
Q ss_pred cccccCCCCCCCccccCCCCCcccchhhhhhhhhCCC--CCCCCCCC
Q 017390 256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL--VPEYRPAS 300 (372)
Q Consensus 256 r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl--~p~~RP~~ 300 (372)
..|..|+... +-..-..| .+.|..||+-+....+ -|+||--+
T Consensus 12 ~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~~iD~gpEWR~F~ 55 (58)
T 1dl6_A 12 VTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRTFS 55 (58)
T ss_dssp CSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCCSC
T ss_pred ccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEeccccccCCcccccC
Confidence 4699998754 44444556 8999999999986433 36777543
No 9
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=65.75 E-value=2.1 Score=30.22 Aligned_cols=40 Identities=23% Similarity=0.553 Sum_probs=26.7
Q ss_pred cccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCC--CCCCC
Q 017390 256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLV--PEYRP 298 (372)
Q Consensus 256 r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~--p~~RP 298 (372)
..|-+|+.. ++-..-..| ...|..||+-|....+- |+||.
T Consensus 6 ~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~~id~~~ewr~ 47 (50)
T 1pft_A 6 KVCPACESA--ELIYDPERG-EIVCAKCGYVIEENIIDMGPEWRA 47 (50)
T ss_dssp CSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCCCCCCCSSSSC
T ss_pred EeCcCCCCc--ceEEcCCCC-eEECcccCCcccccccccCCcccc
Confidence 569999773 333333345 79999999998865432 56664
No 10
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=64.64 E-value=1.6 Score=32.98 Aligned_cols=28 Identities=25% Similarity=0.659 Sum_probs=20.6
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCcccchhhhhhhh
Q 017390 251 GNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYK 288 (372)
Q Consensus 251 ~~~~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk 288 (372)
.....-.|.+||...- +..+|-.|| +|+
T Consensus 26 ~~p~l~~c~~cG~~~~---------pH~vc~~CG-~Y~ 53 (60)
T 2zjr_Z 26 TAPNLTECPQCHGKKL---------SHHICPNCG-YYD 53 (60)
T ss_dssp CCCCCEECTTTCCEEC---------TTBCCTTTC-BSS
T ss_pred cCCCceECCCCCCEeC---------CceEcCCCC-cCC
Confidence 3447789999998643 378999999 444
No 11
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=59.01 E-value=4.3 Score=35.23 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=22.6
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhhhhhh
Q 017390 254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRY 287 (372)
Q Consensus 254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~y 287 (372)
.=-.|..|+.+.|-+-+.+..= -.-|+|||-.-
T Consensus 102 ~yVlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~~ 134 (139)
T 3cw2_K 102 AYVECSTCKSLDTILKKEKKSW-YIVCLACGAQT 134 (139)
T ss_dssp CCSSCCSSSSSCCCSCSSCSTT-TSSCCC-----
T ss_pred HeeECCCCCCcCcEEEEeCCeE-EEEecCCCCCC
Confidence 3468999999999999876433 57899999653
No 12
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=57.15 E-value=4.5 Score=35.53 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=25.2
Q ss_pred cccccCCCCCCCccccCCCCCcccchhhhhhhh
Q 017390 256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYK 288 (372)
Q Consensus 256 r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk 288 (372)
-.|..|+.+.|-+-+.+..- -.-|+|||-..-
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa~~~ 136 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGAETP 136 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCCCCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCCCcc
Confidence 57999999999999865333 578999996543
No 13
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=54.24 E-value=7 Score=37.57 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=27.5
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCC--CCCCC
Q 017390 255 GRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLV--PEYRP 298 (372)
Q Consensus 255 ~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~--p~~RP 298 (372)
...|.+|+...+-.-..-..| .++|..||+-..-..+. +|||-
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl~e~~id~~~EwR~ 65 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLSDKLVDTRSEWRT 65 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCCCCCCCCTTCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCeEcccccccCCccccc
Confidence 457999988743233334466 78999999877643332 46654
No 14
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=53.49 E-value=1.7 Score=32.86 Aligned_cols=26 Identities=35% Similarity=0.765 Sum_probs=19.7
Q ss_pred CCCcccccCCCCCCCccccCCCCCcccchhhhhhhh
Q 017390 253 GEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYK 288 (372)
Q Consensus 253 ~~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk 288 (372)
...-.|.+||...- +..+|-.|| +|+
T Consensus 28 p~l~~c~~cGe~~~---------~H~vc~~CG-~Y~ 53 (60)
T 3v2d_5 28 PTLVPCPECKAMKP---------PHTVCPECG-YYA 53 (60)
T ss_dssp CCCEECTTTCCEEC---------TTSCCTTTC-EET
T ss_pred CceeECCCCCCeec---------ceEEcCCCC-cCC
Confidence 46789999998543 378999999 444
No 15
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=51.79 E-value=4.5 Score=35.11 Aligned_cols=30 Identities=30% Similarity=0.645 Sum_probs=24.3
Q ss_pred cccccCCCCCCCccccCCCCCcccchhhhhh
Q 017390 256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVR 286 (372)
Q Consensus 256 r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~ 286 (372)
-.|..|+.+.|-+-+.+..= -.-|+|||-.
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCCC
Confidence 57999999999999875333 5789999964
No 16
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=48.04 E-value=3.2 Score=30.14 Aligned_cols=33 Identities=27% Similarity=0.571 Sum_probs=25.0
Q ss_pred cccccCCCCC----CCccccCCCCC--cccchhhhhhhh
Q 017390 256 RKCLHCATDK----TPQWRTGPMGP--KTLCNACGVRYK 288 (372)
Q Consensus 256 r~C~~C~t~~----TP~WR~GP~G~--~tLCNACGl~yk 288 (372)
..|.+|+-.. +-|||...++. -+.|..||.+|+
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 5799999855 34788776662 259999999887
No 17
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=47.93 E-value=2.2 Score=29.07 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=22.8
Q ss_pred ccccCCCCCCCccccCCCCCcccchhhhhhhh
Q 017390 257 KCLHCATDKTPQWRTGPMGPKTLCNACGVRYK 288 (372)
Q Consensus 257 ~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk 288 (372)
.|..|+...|-+-+.+..- -.-|+|||-...
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTEEEE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCCccc
Confidence 4899999999988864222 346999997543
No 18
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=44.44 E-value=6.3 Score=29.65 Aligned_cols=20 Identities=40% Similarity=0.893 Sum_probs=17.2
Q ss_pred ccCCCCCcccchhhhhhhhh
Q 017390 270 RTGPMGPKTLCNACGVRYKS 289 (372)
Q Consensus 270 R~GP~G~~tLCNACGl~yk~ 289 (372)
..+|.||++-|.-||+.|-.
T Consensus 6 ~~~~~~P~~eC~lC~vkYs~ 25 (55)
T 2yrk_A 6 SGGTDGTKPECTLCGVKYSA 25 (55)
T ss_dssp CCCCCCCCSCCTTTTCCCCS
T ss_pred CCCCCCCCccccccCccccc
Confidence 35789999999999999973
No 19
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.63 E-value=20 Score=30.95 Aligned_cols=49 Identities=16% Similarity=0.541 Sum_probs=37.1
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhhhhhhhh-CCCCCCCCCCCCCcc
Q 017390 254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKS-GRLVPEYRPASSPTF 304 (372)
Q Consensus 254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~-~rl~p~~RP~~~pt~ 304 (372)
..+.|+.|+.. -|.|-.=..| -.||-.|.-.-+. |.-+-..|.++|-+.
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~ld~w 77 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQW 77 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSSSCC
T ss_pred cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCCCCC
Confidence 56899999986 5999998899 8999999877775 433345677766543
No 20
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=40.56 E-value=11 Score=34.65 Aligned_cols=46 Identities=17% Similarity=0.489 Sum_probs=32.7
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhhhhhhhh-CCCCCCCCCCCC
Q 017390 254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKS-GRLVPEYRPASS 301 (372)
Q Consensus 254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~-~rl~p~~RP~~~ 301 (372)
....|..|+... |.|-.-..| ..+|-.|--.-+. |.-+...|.+.+
T Consensus 41 ~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~lg~~is~v~sl~l 87 (301)
T 2b0o_E 41 GNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRELGVRFSRMQSLTL 87 (301)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTT
T ss_pred CCCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhhCCCcccccccCc
Confidence 468999999965 999999999 8999999554443 322333454444
No 21
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=37.02 E-value=15 Score=31.67 Aligned_cols=48 Identities=21% Similarity=0.549 Sum_probs=35.7
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhhhhhhhh-CCCCCCCCCCCCCc
Q 017390 254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKS-GRLVPEYRPASSPT 303 (372)
Q Consensus 254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~-~rl~p~~RP~~~pt 303 (372)
..+.|..|+... |.|-.=..| -.+|-.|.-.-+. |.-+...|.+++-+
T Consensus 35 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~lD~ 83 (138)
T 2owa_A 35 ENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDLDK 83 (138)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTTSC
T ss_pred CCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCcCc
Confidence 568999999875 999999999 8999999887775 22223456666544
No 22
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=36.37 E-value=17 Score=29.11 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=25.1
Q ss_pred CCcccccCCCCCCCcc---ccCCCCCcccchhhhhhhhh
Q 017390 254 EGRKCLHCATDKTPQW---RTGPMGPKTLCNACGVRYKS 289 (372)
Q Consensus 254 ~~r~C~~C~t~~TP~W---R~GP~G~~tLCNACGl~yk~ 289 (372)
..-.|..|+..++=.- |....| ..-|..||+.|..
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g-~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTG-VISCTVCLEEFQT 59 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEE-EEEESSSCCEEEE
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEE-EEEcccCCCeEEe
Confidence 4468999999874332 333344 6799999999985
No 23
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=35.70 E-value=17 Score=31.23 Aligned_cols=48 Identities=17% Similarity=0.524 Sum_probs=36.1
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhhhhhhhh-CCCCCCCCCCCCCc
Q 017390 254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKS-GRLVPEYRPASSPT 303 (372)
Q Consensus 254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~-~rl~p~~RP~~~pt 303 (372)
..+.|..|+... |.|-.=..| -.+|-.|.-.-+. |.-+...|.+++-+
T Consensus 26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG~hiS~VkSl~ld~ 74 (134)
T 2iqj_A 26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQ 74 (134)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSC
T ss_pred CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCCCCCCceeeccccC
Confidence 568999999875 999998899 8999999877775 32233456666543
No 24
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=35.04 E-value=18 Score=31.21 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=35.5
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCc
Q 017390 254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPT 303 (372)
Q Consensus 254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~pt 303 (372)
....|..|+.. -|.|-.=..| -.+|-.|.-.-+.-+.|-..|.++|-+
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG~~s~VrSl~ld~ 71 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLNPPHRVKSISMTT 71 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTTSSSCCCEEETTTCC
T ss_pred CCCcCCCCCCC-CCCceeeccC-EEEchhccchhccCCCcceeeecCCCC
Confidence 46899999986 6999998899 899999987777522244455665543
No 25
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.51 E-value=29 Score=30.41 Aligned_cols=47 Identities=23% Similarity=0.545 Sum_probs=36.1
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhhhhhhhh-CCCCCCCCCCCCC
Q 017390 254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKS-GRLVPEYRPASSP 302 (372)
Q Consensus 254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~-~rl~p~~RP~~~p 302 (372)
..+.|..|+.. -|.|-.=..| -.+|-.|.-.-+. |.-+-..|-+++-
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~LD 75 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIRSTELD 75 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEECSSSC
T ss_pred CCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeeeccccC
Confidence 56899999975 5999998899 8999999877775 4333455777664
No 26
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=32.09 E-value=7.8 Score=34.82 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=24.3
Q ss_pred cccccCCCCCCCcccc--CCCCCcccchhhhhhhh
Q 017390 256 RKCLHCATDKTPQWRT--GPMGPKTLCNACGVRYK 288 (372)
Q Consensus 256 r~C~~C~t~~TP~WR~--GP~G~~tLCNACGl~yk 288 (372)
-.|..|+...|-+-+. +..- -.-|+|||-..-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~-~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTI-GNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEE-EEEETTTCCCCC
T ss_pred EECCCCCCCccEEEEecCCCEE-EEEccccCCccc
Confidence 4699999999999883 3222 468999997654
No 27
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=31.09 E-value=26 Score=30.78 Aligned_cols=49 Identities=24% Similarity=0.550 Sum_probs=35.4
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhhhhhhhh-CCCCCCCCCCCCCcc
Q 017390 254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKS-GRLVPEYRPASSPTF 304 (372)
Q Consensus 254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~-~rl~p~~RP~~~pt~ 304 (372)
..+.|..|+... |.|-.=..| -.||-.|.-.-+. |.-+...|.+.+-++
T Consensus 37 ~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~hISkVkSl~LD~W 86 (147)
T 3dwd_A 37 ENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVTMDKW 86 (147)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEESCC--C
T ss_pred CCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCCCCCccccccccCC
Confidence 468999999875 999998899 8999999877775 332344566665443
No 28
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=30.57 E-value=16 Score=31.90 Aligned_cols=47 Identities=23% Similarity=0.541 Sum_probs=35.6
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhhhhhhhh-CCCCCCCCCCCCC
Q 017390 254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKS-GRLVPEYRPASSP 302 (372)
Q Consensus 254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~-~rl~p~~RP~~~p 302 (372)
..+.|.+|+.. -|.|-.=..| -.+|-.|.-.-+. |.-+...|.+.+-
T Consensus 36 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hIS~VrSl~LD 83 (144)
T 2p57_A 36 TNKACFDCGAK-NPSWASITYG-VFLCIDCSGVHRSLGVHLSFIRSTELD 83 (144)
T ss_dssp GGGBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEESSSC
T ss_pred CCCcCCCCcCC-CCCeEEeccC-EEEhhhchHHHcCCCCCCCeeeecccC
Confidence 56899999986 4999988889 8999999887775 4333455655553
No 29
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.42 E-value=11 Score=33.36 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=24.1
Q ss_pred cccccCCCCCCCccc--cCCCCCcccchhhhhhhh
Q 017390 256 RKCLHCATDKTPQWR--TGPMGPKTLCNACGVRYK 288 (372)
Q Consensus 256 r~C~~C~t~~TP~WR--~GP~G~~tLCNACGl~yk 288 (372)
-.|..|+...|-+-+ .+..= -.-|+|||-..-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~-~l~C~ACGa~~~ 137 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTI-GNSCKACGYRGM 137 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEE-EEECSSSCCEEE
T ss_pred EECCCCCCCccEEEEecCCCEE-EEEccCCCCCCc
Confidence 579999999999987 32222 467999997654
No 30
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=25.35 E-value=17 Score=34.90 Aligned_cols=34 Identities=29% Similarity=0.577 Sum_probs=25.3
Q ss_pred CcccccCCCCCCCcc----ccCCCCC--cccchhhhhhhh
Q 017390 255 GRKCLHCATDKTPQW----RTGPMGP--KTLCNACGVRYK 288 (372)
Q Consensus 255 ~r~C~~C~t~~TP~W----R~GP~G~--~tLCNACGl~yk 288 (372)
...|..|+-...-.| |...+|- -+.|..||-+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 458999998876544 6665552 359999999997
No 31
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=24.81 E-value=19 Score=32.08 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=23.7
Q ss_pred CcccccCCCCCC---Ccc-ccCCCCC--cccchhhhhhhh
Q 017390 255 GRKCLHCATDKT---PQW-RTGPMGP--KTLCNACGVRYK 288 (372)
Q Consensus 255 ~r~C~~C~t~~T---P~W-R~GP~G~--~tLCNACGl~yk 288 (372)
...|..|+-... ..+ |...++. -+.|..||-+|+
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 468999998763 222 5555552 358999999997
No 32
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=22.68 E-value=27 Score=29.64 Aligned_cols=30 Identities=20% Similarity=0.518 Sum_probs=25.6
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhhh
Q 017390 255 GRKCLHCATDKTPQWRTGPMGPKTLCNACG 284 (372)
Q Consensus 255 ~r~C~~C~t~~TP~WR~GP~G~~tLCNACG 284 (372)
.+-|..||...+.....|..+....|-.||
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCccccccccCCCCcceECCCCC
Confidence 468999999998877778777778999999
No 33
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=22.33 E-value=19 Score=25.96 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=24.3
Q ss_pred CcccccCCCCCCCcc----ccCCCCCc--ccchhhhhhhh
Q 017390 255 GRKCLHCATDKTPQW----RTGPMGPK--TLCNACGVRYK 288 (372)
Q Consensus 255 ~r~C~~C~t~~TP~W----R~GP~G~~--tLCNACGl~yk 288 (372)
...|..|+-...--| |...++.. +.|..||-+|+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 357999998775433 66666632 48999999886
No 34
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=21.28 E-value=23 Score=34.27 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=22.2
Q ss_pred cccccCCCCCCCccccCCCCCcccchhhhhhhhh
Q 017390 256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKS 289 (372)
Q Consensus 256 r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~ 289 (372)
..|..|+...+-.--+-..| .++|..||+-..-
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlVl~e 54 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEG-DVVCALCGLVLSD 54 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGT-EEEETTTCBEEES
T ss_pred CcCCCCCCCCCceeEECCCC-cEEeCCCCCCccC
Confidence 46999987444443333456 8899999987753
Done!