BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017391
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V8Z|A Chain A, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|B Chain B, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|C Chain C, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|D Chain D, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
Length = 388
Score = 318 bits (815), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/301 (52%), Positives = 208/301 (69%), Gaps = 8/301 (2%)
Query: 75 FGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDH 134
FG FGG++VPETLI L LE + D +F +L+ L+ + GR TPLY+A+RLT
Sbjct: 3 FGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLT-- 60
Query: 135 YRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXX 194
EK G +IYLKREDL H GAHK NNAIGQA++AK MG+ ++A TGAGQHGV
Sbjct: 61 ---EKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMA 117
Query: 195 XXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRNWVGNLE 251
++MG D+E+Q V MKLLGA V V+ K+A +EA+R+WV E
Sbjct: 118 GALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFE 177
Query: 252 KSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFH 311
++YL G+VVGPHP P +VR+FQS+IG+E + Q +E G PDV++ACVG GSNA+G+F+
Sbjct: 178 YTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFY 237
Query: 312 EFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV 371
F+ND+ V+L+GVEA G GL+SGKH+A+L G+VGV+HG +SY LQDEEGQI THS+
Sbjct: 238 PFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAP 297
Query: 372 G 372
G
Sbjct: 298 G 298
>pdb|1WDW|B Chain B, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|D Chain D, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|F Chain F, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|H Chain H, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|J Chain J, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|L Chain L, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
Length = 385
Score = 318 bits (815), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/301 (52%), Positives = 208/301 (69%), Gaps = 8/301 (2%)
Query: 75 FGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDH 134
FG FGG++VPETLI L LE + D +F +L+ L+ + GR TPLY+A+RLT
Sbjct: 3 FGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLT-- 60
Query: 135 YRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXX 194
EK G +IYLKREDL H GAHK NNAIGQA++AK MG+ ++A TGAGQHGV
Sbjct: 61 ---EKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMA 117
Query: 195 XXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRNWVGNLE 251
++MG D+E+Q V MKLLGA V V+ K+A +EA+R+WV E
Sbjct: 118 GALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFE 177
Query: 252 KSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFH 311
++YL G+VVGPHP P +VR+FQS+IG+E + Q +E G PDV++ACVG GSNA+G+F+
Sbjct: 178 YTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFY 237
Query: 312 EFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV 371
F+ND+ V+L+GVEA G GL+SGKH+A+L G+VGV+HG +SY LQDEEGQI THS+
Sbjct: 238 PFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAP 297
Query: 372 G 372
G
Sbjct: 298 G 298
>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
pdb|1X1Q|B Chain B, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
Length = 418
Score = 291 bits (745), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/305 (47%), Positives = 204/305 (66%), Gaps = 10/305 (3%)
Query: 73 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLT 132
G+FG +GG++VPETLI L LEA + +D F EEL LR + GR TPLY A+RL+
Sbjct: 28 GRFGPYGGRYVPETLIPALEELEAAYREAKKDPAFLEELDHYLRQFAGRPTPLYHAKRLS 87
Query: 133 DHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXX 192
+++ G +++LKREDL H GAHKINN +GQA++A+R G++ ++A TGAGQHGV
Sbjct: 88 EYW-----GGAQVFLKREDLLHTGAHKINNTLGQALLARRXGKRRVIAETGAGQHGVSVA 142
Query: 193 XXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRNWVGN 249
V+ G D+ +Q+ V KLLGA+V+ V K+A++EAIR+W+ N
Sbjct: 143 TVAALFGLECVVYXGEEDVRRQALNVFRXKLLGAEVRPVAAGSRTLKDATNEAIRDWITN 202
Query: 250 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGL 309
+ ++Y+ G+VVGPHP P VR+FQS+IG+E ++Q++E +G PD L+A VG GSNA+GL
Sbjct: 203 VRTTFYILGSVVGPHPYPXXVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGL 262
Query: 310 FHEF--INDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTH 367
F F + + +LIGVEAAG GL +G+HAA++ G+ GV HG+ YLL D +GQI H
Sbjct: 263 FAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGVLHGSYXYLLYDHDGQITPAH 322
Query: 368 SVGVG 372
SV G
Sbjct: 323 SVSAG 327
>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2E|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2J|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
pdb|2O2J|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
Length = 422
Score = 282 bits (722), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 145/334 (43%), Positives = 199/334 (59%), Gaps = 14/334 (4%)
Query: 48 MRKPLINSLLPKTDHDHREYWKLNPGKFGRFGG------KFVPETLITCLSLLEAEFNFV 101
M L LP+ E +P G FGG ++VPE L+ + + A +
Sbjct: 1 MMTDLSTPDLPRMSAAIAEPTSHDPDSGGHFGGPSGWGGRYVPEALMAVIEEVTAAYQKE 60
Query: 102 LQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKIN 161
F ++L +Y GR +PLY A RL+ H + + I+LKREDLNH G+HKIN
Sbjct: 61 RVSQDFLDDLDRLQANYAGRPSPLYEATRLSQHAGSAR-----IFLKREDLNHTGSHKIN 115
Query: 162 NAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLM 221
N +GQA++A+RMG+ ++A TGAGQHGV ++MG D +Q+ V M
Sbjct: 116 NVLGQALLARRMGKTRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARM 175
Query: 222 KLLGAQVKAVDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIG 278
+LLGA+V AV K+A +EA R+WV N + +YY GT GPHP P MVR+FQ IIG
Sbjct: 176 RLLGAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIG 235
Query: 279 KETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAA 338
E R Q + G PD ++ACVG GSNA+G+FH F++D VRL+G EAAG G+++G+HAA
Sbjct: 236 MEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLDDPGVRLVGFEAAGDGVETGRHAA 295
Query: 339 TLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG 372
T G G +HG+ SYLLQDE+GQ + +HS+ G
Sbjct: 296 TFTAGSPGAFHGSFSYLLQDEDGQTIESHSISAG 329
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb
pdb|2DH6|A Chain A, Crystal Structure Of E. Coli Apo-trpb
Length = 397
Score = 273 bits (698), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 194/306 (63%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L LE F +D +FQ + + L++Y GR T L +
Sbjct: 5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQ 63
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T G +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 64 NIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGV 117
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 118 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 177
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q +E+ G PD ++ACVG GSNA
Sbjct: 178 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILEREGRLPDAVIACVGGGSNA 237
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIN+ +V LIGVE G G+++G+H A L G VG+Y G + ++Q E+GQI +
Sbjct: 238 IGMFADFINETNVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTEDGQIEES 297
Query: 367 HSVGVG 372
+S+ G
Sbjct: 298 YSISAG 303
>pdb|1K8X|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium
pdb|1KFC|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Propanol Phosphate
pdb|1KFJ|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With L-Serine
pdb|1KFK|B Chain B, Crystal Structure Of Tryptophan Synthase From Salmonella
Typhimurium
pdb|2RH9|B Chain B, Tryptophan Synthase Complexed With Igp, Internal Aldimine,
Ph 9.0
pdb|2RHG|B Chain B, Tryptophan Synthase Complexed With Igp, Ph 7.0, Internal
Aldimine
Length = 397
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 193/306 (63%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQ 63
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 64 NITAGTRTT------LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGV 117
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 118 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 177
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 178 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 237
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 238 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 297
Query: 367 HSVGVG 372
+S+ G
Sbjct: 298 YSISAG 303
>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With L-ser Bound To
The Beta Site
Length = 394
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 193/306 (63%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 4 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQ 62
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 63 NITAGTRTT------LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGV 116
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 117 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 176
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 177 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 236
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 237 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 296
Query: 367 HSVGVG 372
+S+ G
Sbjct: 297 YSISAG 302
>pdb|1QOP|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7E|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1KFB|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Glycerol Phosphate
pdb|1TJP|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 1-
[(2-Hydroxylphenyl)amino]3-Glycerolphosphate
pdb|1WBJ|B Chain B, Wildtype Tryptophan Synthase Complexed With Glycerol
Phosphate
pdb|2CLI|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2CLK|B Chain B, Tryptophan Synthase In Complex With D-Glyceraldehyde 3-
Phosphate (G3p)
pdb|2CLL|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2J9X|B Chain B, Tryptophan Synthase In Complex With Gp,
Alpha-D,L-Glycerol- Phosphate, Cs, Ph6.5 - Alpha
Aminoacrylate Form - (Gp)e(A- A)
pdb|3CEP|B Chain B, Structure Of A Tryptophan Synthase Quinonoid Intermediate
Length = 396
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 193/306 (63%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 4 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQ 62
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 63 NITAGTRTT------LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGV 116
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 117 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 176
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 177 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 236
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 237 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 296
Query: 367 HSVGVG 372
+S+ G
Sbjct: 297 YSISAG 302
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
Length = 396
Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 193/306 (63%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 4 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQ 62
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 63 NITAGTRTT------LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGV 116
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 117 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 176
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 177 PGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 236
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 237 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 296
Query: 367 HSVGVG 372
+S+ G
Sbjct: 297 YSISAG 302
>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1TTQ|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1A5S|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1C9D|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxy-4- Fluorophenylthio)-Butylphosphonic Acid
pdb|1CW2|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylsulfinyl)- Butylphosphonic Acid
pdb|1CX9|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Aminophenylthio)- Butylphosphonic Acid
pdb|1C29|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)-1- Butenylphosphonic Acid
pdb|1C8V|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)- Butylphosphonic Acid
Length = 397
Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 193/306 (63%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQ 63
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 64 NITAGTRTT------LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGV 117
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 118 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 177
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 178 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 237
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 238 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 297
Query: 367 HSVGVG 372
+S+ G
Sbjct: 298 YSISAG 303
>pdb|3PR2|B Chain B, Tryptophan Synthase Indoline Quinonoid Structure With F9
Inhibitor In Alpha Site
Length = 391
Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 193/306 (63%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 3 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQ 61
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 62 NITAGTRTT------LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGV 115
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 116 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 175
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 176 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 235
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 236 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 295
Query: 367 HSVGVG 372
+S+ G
Sbjct: 296 YSISAG 301
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate
pdb|2WSY|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
pdb|2CLE|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6)-
Lowf6 Complex
pdb|2CLH|B Chain B, Tryptophan Synthase In Complex With (Naphthalene-2'-
Sulfonyl)-2-Amino-1-Ethylphosphate (F19)
pdb|2CLM|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzoyl)-2-Amino-1-
Ethylphosphate (F6f)
pdb|2CLO|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With (Naphthalene-2'-Sulfonyl)-2-Amino-1-Ethylphosphate
(F19)
pdb|2CLF|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6) -
Highf6 Complex
Length = 396
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 193/306 (63%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 4 LNP-YFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQ 62
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 63 NITAGTRTT------LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGV 116
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 117 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 176
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 177 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 236
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 237 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 296
Query: 367 HSVGVG 372
+S+ G
Sbjct: 297 YSISAG 302
>pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+
Length = 397
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 193/306 (63%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQ 63
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 64 NITAGTRTT------LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGV 117
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 118 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 177
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 178 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 237
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 238 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 297
Query: 367 HSVGVG 372
+S+ G
Sbjct: 298 YSISAG 303
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound
Ii
Length = 397
Score = 271 bits (692), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 192/306 (62%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQ 63
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAG HGV
Sbjct: 64 NITAGTRTT------LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGNHGV 117
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 118 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 177
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 178 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 237
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 238 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 297
Query: 367 HSVGVG 372
+S+ G
Sbjct: 298 YSISAG 303
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 270 bits (691), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 192/306 (62%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQ 63
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAH N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 64 NITAGTRTT------LYLKREDLLHGGAHTTNQVLGQALLAKRMGKSEIIAETGAGQHGV 117
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 118 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 177
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 178 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 237
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 238 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 297
Query: 367 HSVGVG 372
+S+ G
Sbjct: 298 YSISAG 303
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TRS|B Chain B, Crystal Structures Of Mutant (betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-induced Conformational Changes
pdb|2TSY|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 270 bits (691), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 192/306 (62%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQ 63
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAH N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 64 NITAGTRTT------LYLKREDLLHGGAHTTNQVLGQALLAKRMGKSEIIAETGAGQHGV 117
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 118 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 177
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 178 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 237
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 238 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 297
Query: 367 HSVGVG 372
+S+ G
Sbjct: 298 YSISAG 303
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
Length = 396
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 192/306 (62%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 4 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQ 62
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 63 NITAGTRTT------LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGV 116
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+ +W
Sbjct: 117 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALADW 176
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 177 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 236
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 237 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 296
Query: 367 HSVGVG 372
+S+ G
Sbjct: 297 YSISAG 302
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
TRYPTOPHAN Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
Length = 396
Score = 269 bits (688), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 192/306 (62%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 4 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQ 62
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 63 NITAGTRTT------LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGV 116
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+ +EA+R+W
Sbjct: 117 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDLWNEALRDW 176
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 177 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 236
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 237 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 296
Query: 367 HSVGVG 372
+S+ G
Sbjct: 297 YSISAG 302
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex
Length = 397
Score = 268 bits (686), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/306 (44%), Positives = 191/306 (62%), Gaps = 10/306 (3%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
LNP FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 5 LNP-YFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQ 63
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T R +YLKREDL H GAHK N +GQA++AKRMG+ I+A GAG HGV
Sbjct: 64 NITAGTRTT------LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAEVGAGNHGV 117
Query: 190 XXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNW 246
++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 118 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 177
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 178 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 237
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 238 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 297
Query: 367 HSVGVG 372
+S+ G
Sbjct: 298 YSISAG 303
>pdb|4D96|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D9B|A Chain A, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|B Chain B, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|C Chain C, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|D Chain D, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9C|A Chain A, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|B Chain B, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|C Chain C, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|D Chain D, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9E|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9F|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
Length = 342
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 117 DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHV--GAHKINNAIGQAMIAKRMG 174
+++G TPL + RL+D+ G EIY+KR+D+ + G +K+ A R G
Sbjct: 27 EFIGAPTPLEYLPRLSDYL------GREIYIKRDDVTPIAMGGNKLRKLEFLVADALREG 80
Query: 175 RKSIVAA 181
+++ A
Sbjct: 81 ADTLITA 87
>pdb|4D8T|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8U|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|E Chain E, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|F Chain F, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|G Chain G, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|H Chain H, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8W|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D92|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D99|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
Length = 342
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 117 DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVG 156
+++G TPL + RL+D+ G EIY+KR+D+ +
Sbjct: 27 EFIGAPTPLEYLPRLSDYL------GREIYIKRDDVTPIA 60
>pdb|4D97|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
Length = 346
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 117 DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVG 156
+++G TPL + RL+D+ G EIY+KR+D+ +
Sbjct: 27 EFIGAPTPLEYLPRLSDYL------GREIYIKRDDVTPIA 60
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 43/126 (34%), Gaps = 9/126 (7%)
Query: 119 VGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSI 178
V E+PL AE+L+D G Y+KRED V + + A R
Sbjct: 57 VAIESPLELAEKLSDRL------GVNFYIKREDKQRVFSFXLRGAYNMMSNLSREELDKG 110
Query: 179 VAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEA 238
V AG H + M T K+ ++ LG V F EA
Sbjct: 111 VITASAGNHAQGVALAGQRLNCVAKIVMPTT---TPQIKIDAVRALGGDVVLYGKTFDEA 167
Query: 239 SSEAIR 244
+ A+
Sbjct: 168 QTHALE 173
>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
pdb|2F1F|B Chain B, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
Length = 164
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 237 EASSEAIRNWVGNL-EKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PD 294
E S A+ +G ++ Y + V P P + R +G E + +EK K D
Sbjct: 11 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVD 70
Query: 295 VL-LACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEV 345
VL ++ +G G++ + ++ L+ ++A+G+G D K + +G++
Sbjct: 71 VLRVSELGQGAHV---------EREIMLVKIQASGYGRDEVKRNTEIFRGQI 113
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 291 GKPDVLLACVG---SGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGV 347
GK D +++ +G G + LGL DE ++LI ++ + +D+ H KG G
Sbjct: 335 GKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSGSYFVDAHHHQQEQQKGRKGA 394
Query: 348 Y 348
+
Sbjct: 395 F 395
>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2
pdb|4ADY|B Chain B, Crystal Structure Of 26s Proteasome Subunit Rpn2
Length = 963
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 284 QAMEKWGGKPDVLLACVGSGSNAL--GLFHEFIND--EDVRLIGVEAAGFGL 331
+++ ++GG + LA G+G+N+ L H ++D +DVR V A GF L
Sbjct: 555 ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVL 606
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 284 QAMEKWGGKPDVLLACVGSGSNAL--GLFHEFIND--EDVRLIGVEAAGFGL 331
+++ ++GG + LA G+G+N+ L H ++D +DVR V A GF L
Sbjct: 544 ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVL 595
>pdb|2G04|A Chain A, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|B Chain B, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|C Chain C, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|D Chain D, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|E Chain E, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|F Chain F, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
Length = 359
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 280 ETRKQAMEKWGGKPDVLLACVGSGS-NALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAA 338
+T+ QAM + K DVLL C G+ LG+ + + RLI G+G D G A+
Sbjct: 66 KTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQD-GPLAS 124
Query: 339 T 339
T
Sbjct: 125 T 125
>pdb|3VDI|A Chain A, Structure Of The Fmo Protein From Pelodictyon Phaeum
Length = 367
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 33/132 (25%)
Query: 247 VGNLEKSYYLTGTVVG-------------PHPCPIMVREFQSIIGKE--TRKQAMEKWGG 291
VG+ + G+VV P+P + R+F I+ K K +E W G
Sbjct: 106 VGDFSHKFSFEGSVVNMYYYRSDAVRRNVPNPVYMQGRQFHDIMMKVPLDNKDLIETWEG 165
Query: 292 KPDVLLACVGSGSNALGLFHEF---------INDEDVRLIGVEAAGFGLDSGKHAATLAK 342
+ G G N EF IN+ R+ ++ FG++SG+ K
Sbjct: 166 ---FQQSISGGGVNFGDWIREFWFIGPAYTAINEGGQRISPIQVNNFGVESGE------K 216
Query: 343 GEVGVYHGAMSY 354
G VGV S+
Sbjct: 217 GPVGVSRWKFSH 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,449,770
Number of Sequences: 62578
Number of extensions: 426734
Number of successful extensions: 1043
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 31
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)