Query 017391
Match_columns 372
No_of_seqs 386 out of 2128
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:10:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0133 TrpB Tryptophan syntha 100.0 2.6E-76 5.7E-81 557.4 25.3 299 68-372 2-303 (396)
2 PRK04346 tryptophan synthase s 100.0 1.1E-68 2.5E-73 535.2 31.6 300 68-372 4-306 (397)
3 PLN02618 tryptophan synthase, 100.0 4.4E-67 9.5E-72 524.9 32.0 305 68-372 12-319 (410)
4 PRK13028 tryptophan synthase s 100.0 8E-66 1.7E-70 515.4 32.1 300 68-372 8-310 (402)
5 PRK13802 bifunctional indole-3 100.0 2.4E-62 5.2E-67 515.3 31.0 298 71-372 275-582 (695)
6 PRK13803 bifunctional phosphor 100.0 2.8E-62 6E-67 514.0 30.7 312 48-372 204-518 (610)
7 KOG1395 Tryptophan synthase be 100.0 2.1E-61 4.6E-66 460.2 20.2 296 72-372 73-371 (477)
8 TIGR00263 trpB tryptophan synt 100.0 4.5E-56 9.8E-61 445.0 30.3 295 73-372 1-298 (385)
9 cd06446 Trp-synth_B Tryptophan 100.0 2E-43 4.3E-48 351.6 28.7 261 90-355 2-265 (365)
10 PRK09225 threonine synthase; V 100.0 3E-43 6.6E-48 357.9 19.9 253 38-325 1-279 (462)
11 cd01560 Thr-synth_2 Threonine 100.0 1.9E-41 4E-46 344.9 21.2 257 39-328 1-284 (460)
12 COG1171 IlvA Threonine dehydra 100.0 2.8E-41 6E-46 328.6 18.0 224 110-356 14-251 (347)
13 PRK08526 threonine dehydratase 100.0 1.6E-39 3.5E-44 327.0 19.8 198 110-331 9-208 (403)
14 PRK12483 threonine dehydratase 100.0 6.9E-39 1.5E-43 330.3 23.7 199 109-331 25-226 (521)
15 PRK06382 threonine dehydratase 100.0 4.9E-39 1.1E-43 324.3 20.4 199 110-331 14-213 (406)
16 PRK08198 threonine dehydratase 100.0 3.3E-39 7.1E-44 325.3 18.7 199 110-331 11-210 (404)
17 PLN02565 cysteine synthase 100.0 1.4E-38 3E-43 311.8 22.1 236 115-370 9-253 (322)
18 PRK08638 threonine dehydratase 100.0 6.9E-39 1.5E-43 315.3 18.5 237 110-369 16-267 (333)
19 COG0498 ThrC Threonine synthas 100.0 6.5E-39 1.4E-43 320.3 18.1 255 38-331 1-275 (411)
20 COG0031 CysK Cysteine synthase 100.0 3.6E-38 7.8E-43 301.8 22.4 237 115-370 5-249 (300)
21 PLN02970 serine racemase 100.0 3.5E-38 7.5E-43 309.8 22.7 198 111-331 17-215 (328)
22 PLN03013 cysteine synthase 100.0 3.5E-38 7.7E-43 316.8 22.9 238 113-370 115-361 (429)
23 PRK07476 eutB threonine dehydr 100.0 2.8E-38 6.1E-43 309.7 21.2 199 109-330 7-206 (322)
24 PLN02550 threonine dehydratase 100.0 1.7E-38 3.6E-43 329.7 19.9 223 110-355 98-332 (591)
25 TIGR01127 ilvA_1Cterm threonin 100.0 1.2E-38 2.6E-43 318.8 17.2 187 123-331 1-188 (380)
26 PRK06110 hypothetical protein; 100.0 4.2E-38 9.2E-43 308.4 20.8 199 109-331 9-209 (322)
27 KOG1250 Threonine/serine dehyd 100.0 1.8E-38 3.9E-43 307.9 17.3 223 110-355 55-289 (457)
28 PRK11761 cysM cysteine synthas 100.0 6.7E-38 1.5E-42 303.7 21.4 197 114-331 5-207 (296)
29 PRK08639 threonine dehydratase 100.0 2.9E-38 6.2E-43 319.9 18.9 200 111-331 15-219 (420)
30 PRK08813 threonine dehydratase 100.0 8.8E-38 1.9E-42 308.2 21.5 226 110-367 28-266 (349)
31 TIGR01139 cysK cysteine syntha 100.0 1.7E-37 3.7E-42 300.8 22.9 196 117-332 3-204 (298)
32 TIGR01136 cysKM cysteine synth 100.0 2.1E-37 4.6E-42 300.4 23.3 195 117-331 3-203 (299)
33 TIGR01124 ilvA_2Cterm threonin 100.0 2E-37 4.3E-42 319.0 24.3 199 109-331 5-206 (499)
34 TIGR02079 THD1 threonine dehyd 100.0 4.5E-38 9.8E-43 317.4 19.2 236 110-367 5-258 (409)
35 PRK10717 cysteine synthase A; 100.0 2.4E-37 5.2E-42 304.0 23.2 200 115-332 7-217 (330)
36 TIGR01138 cysM cysteine syntha 100.0 2.5E-37 5.3E-42 299.0 22.1 195 116-331 3-203 (290)
37 PRK09224 threonine dehydratase 100.0 2.6E-37 5.7E-42 319.0 23.0 200 109-331 8-209 (504)
38 cd01561 CBS_like CBS_like: Thi 100.0 5.2E-37 1.1E-41 296.4 22.9 203 122-344 2-214 (291)
39 TIGR02991 ectoine_eutB ectoine 100.0 4.1E-37 8.9E-42 300.9 22.3 198 109-330 7-206 (317)
40 PRK07048 serine/threonine dehy 100.0 2.4E-37 5.3E-42 302.9 20.1 198 110-330 13-211 (321)
41 PLN02556 cysteine synthase/L-3 100.0 4.6E-37 9.9E-42 305.8 22.2 238 113-370 51-297 (368)
42 cd06448 L-Ser-dehyd Serine deh 100.0 1.1E-37 2.5E-42 304.7 17.1 192 122-331 1-197 (316)
43 PLN02356 phosphateglycerate ki 100.0 5.5E-37 1.2E-41 308.1 22.2 237 115-370 47-348 (423)
44 cd06447 D-Ser-dehyd D-Serine d 100.0 1.1E-36 2.4E-41 305.5 24.3 200 121-330 51-284 (404)
45 PLN00011 cysteine synthase 100.0 1.1E-36 2.4E-41 298.6 23.4 232 118-369 14-254 (323)
46 TIGR01415 trpB_rel pyridoxal-p 100.0 3.3E-36 7.1E-41 303.9 26.0 209 110-331 57-288 (419)
47 PRK06381 threonine synthase; V 100.0 1.6E-36 3.5E-41 296.7 23.0 200 111-330 5-211 (319)
48 PRK07334 threonine dehydratase 100.0 2E-37 4.4E-42 312.3 17.0 199 109-331 11-211 (403)
49 cd01562 Thr-dehyd Threonine de 100.0 9.1E-37 2E-41 295.7 20.2 199 110-331 6-205 (304)
50 PRK12391 tryptophan synthase s 100.0 3E-36 6.5E-41 304.6 24.0 209 109-331 66-297 (427)
51 PRK06815 hypothetical protein; 100.0 1.2E-36 2.6E-41 297.5 20.3 199 110-331 9-208 (317)
52 PRK06608 threonine dehydratase 100.0 3.7E-36 8.1E-41 296.5 22.1 197 110-330 12-210 (338)
53 PRK08246 threonine dehydratase 100.0 5.4E-36 1.2E-40 292.2 22.4 194 110-331 12-205 (310)
54 PRK02991 D-serine dehydratase; 100.0 6.5E-36 1.4E-40 303.1 23.0 200 121-330 74-307 (441)
55 PRK06352 threonine synthase; V 100.0 4.2E-36 9E-41 297.6 20.6 188 121-330 27-220 (351)
56 PRK07591 threonine synthase; V 100.0 8.7E-36 1.9E-40 301.8 22.6 191 121-330 88-286 (421)
57 PRK08206 diaminopropionate amm 100.0 1.7E-35 3.6E-40 297.8 23.3 207 110-331 31-269 (399)
58 PRK08197 threonine synthase; V 100.0 1.4E-35 3E-40 298.1 21.8 191 121-331 78-276 (394)
59 TIGR01137 cysta_beta cystathio 100.0 1.6E-35 3.5E-40 302.2 22.0 199 115-333 5-212 (454)
60 TIGR02035 D_Ser_am_lyase D-ser 100.0 3.7E-35 8.1E-40 296.6 24.3 200 121-330 69-302 (431)
61 PRK07409 threonine synthase; V 100.0 3.7E-35 8E-40 291.1 21.8 188 121-330 30-224 (353)
62 PRK06721 threonine synthase; R 100.0 6.1E-35 1.3E-39 289.4 23.1 189 121-331 27-221 (352)
63 PRK06260 threonine synthase; V 100.0 5.1E-35 1.1E-39 294.3 22.0 191 121-331 66-263 (397)
64 cd00640 Trp-synth-beta_II Tryp 100.0 6.8E-35 1.5E-39 274.3 21.5 185 123-326 1-188 (244)
65 cd01563 Thr-synth_1 Threonine 100.0 5.1E-35 1.1E-39 286.5 21.4 189 121-330 21-216 (324)
66 PLN02569 threonine synthase 100.0 5.6E-35 1.2E-39 299.4 22.4 192 121-331 132-335 (484)
67 PRK06450 threonine synthase; V 100.0 1.5E-34 3.3E-39 284.9 21.5 177 121-330 57-240 (338)
68 PRK05638 threonine synthase; V 100.0 1.5E-34 3.2E-39 294.6 21.9 186 121-331 65-257 (442)
69 TIGR00260 thrC threonine synth 100.0 6.6E-35 1.4E-39 286.1 17.7 191 121-330 22-219 (328)
70 TIGR01747 diampropi_NH3ly diam 100.0 4.9E-34 1.1E-38 284.9 23.5 205 109-331 11-248 (376)
71 PRK08329 threonine synthase; V 100.0 4.3E-34 9.2E-39 282.9 21.2 194 121-344 63-265 (347)
72 KOG1251 Serine racemase [Signa 100.0 8.1E-35 1.7E-39 267.2 14.5 227 109-359 13-251 (323)
73 TIGR03528 2_3_DAP_am_ly diamin 100.0 7.8E-34 1.7E-38 285.1 22.4 208 109-331 30-267 (396)
74 TIGR01275 ACC_deam_rel pyridox 100.0 6.2E-33 1.3E-37 270.4 21.6 198 118-330 3-208 (311)
75 cd06449 ACCD Aminocyclopropane 100.0 2.1E-32 4.6E-37 266.3 21.6 200 123-331 1-214 (307)
76 PRK03910 D-cysteine desulfhydr 100.0 3.7E-32 8E-37 267.4 22.8 199 121-331 14-223 (331)
77 TIGR01274 ACC_deam 1-aminocycl 100.0 5.7E-32 1.2E-36 266.7 22.8 202 121-331 13-228 (337)
78 KOG1252 Cystathionine beta-syn 100.0 1.2E-32 2.7E-37 263.4 14.6 235 115-369 46-294 (362)
79 PRK12390 1-aminocyclopropane-1 100.0 1.7E-31 3.7E-36 263.2 22.9 201 121-331 14-229 (337)
80 TIGR03844 cysteate_syn cysteat 100.0 5.3E-32 1.2E-36 271.9 18.1 188 122-331 62-265 (398)
81 PF00291 PALP: Pyridoxal-phosp 100.0 1.5E-31 3.2E-36 258.3 20.3 192 116-331 2-205 (306)
82 PRK14045 1-aminocyclopropane-1 100.0 2.2E-30 4.8E-35 254.6 22.2 194 120-328 19-221 (329)
83 COG1350 Predicted alternative 100.0 1.8E-29 3.9E-34 240.0 17.2 210 109-331 66-298 (432)
84 KOG1481 Cysteine synthase [Ami 100.0 6.1E-29 1.3E-33 232.2 14.8 237 114-369 42-313 (391)
85 COG2515 Acd 1-aminocyclopropan 99.9 1.7E-21 3.6E-26 185.0 17.7 201 118-331 11-220 (323)
86 COG3048 DsdA D-serine dehydrat 99.6 1.6E-14 3.4E-19 137.3 13.3 216 122-350 78-350 (443)
87 PF14821 Thr_synth_N: Threonin 99.2 7.4E-12 1.6E-16 98.4 3.4 63 39-120 1-63 (79)
88 PF05368 NmrA: NmrA-like famil 88.1 2.2 4.8E-05 39.2 7.9 50 179-232 2-51 (233)
89 COG1751 Uncharacterized conser 81.9 12 0.00025 33.3 8.7 77 154-231 7-89 (186)
90 PF00070 Pyr_redox: Pyridine n 81.7 9.2 0.0002 29.1 7.5 33 178-211 2-34 (80)
91 PF00106 adh_short: short chai 81.7 7.8 0.00017 33.1 7.9 71 177-247 2-75 (167)
92 PF00107 ADH_zinc_N: Zinc-bind 79.4 5.1 0.00011 33.0 5.7 23 292-314 58-80 (130)
93 PF04127 DFP: DNA / pantothena 72.7 29 0.00062 31.5 9.1 72 177-261 21-92 (185)
94 PRK06128 oxidoreductase; Provi 72.4 29 0.00063 33.2 9.7 58 177-234 57-114 (300)
95 PRK06182 short chain dehydroge 69.5 44 0.00095 31.2 10.1 66 177-248 5-70 (273)
96 PRK07109 short chain dehydroge 67.7 36 0.00077 33.4 9.3 57 176-234 9-65 (334)
97 PRK12743 oxidoreductase; Provi 66.9 47 0.001 30.6 9.6 57 177-234 4-60 (256)
98 PRK12481 2-deoxy-D-gluconate 3 66.6 54 0.0012 30.3 9.9 54 176-233 9-62 (251)
99 PF01210 NAD_Gly3P_dh_N: NAD-d 66.1 13 0.00029 32.3 5.3 39 182-226 5-43 (157)
100 PRK08589 short chain dehydroge 65.4 54 0.0012 30.7 9.8 54 177-233 8-61 (272)
101 TIGR00670 asp_carb_tr aspartat 65.3 28 0.00061 34.1 7.9 48 185-233 162-209 (301)
102 PRK07523 gluconate 5-dehydroge 64.5 66 0.0014 29.5 10.1 57 176-234 11-67 (255)
103 PRK12823 benD 1,6-dihydroxycyc 64.5 72 0.0016 29.3 10.3 55 176-233 9-63 (260)
104 PRK13394 3-hydroxybutyrate deh 64.2 77 0.0017 29.0 10.4 57 177-235 9-65 (262)
105 PRK06935 2-deoxy-D-gluconate 3 64.0 65 0.0014 29.7 9.9 55 176-233 16-70 (258)
106 PRK06139 short chain dehydroge 63.8 45 0.00099 32.7 9.2 56 176-233 8-63 (330)
107 PRK06483 dihydromonapterin red 63.3 87 0.0019 28.3 10.5 66 177-247 4-69 (236)
108 PRK08277 D-mannonate oxidoredu 63.3 55 0.0012 30.6 9.4 58 176-235 11-68 (278)
109 PRK05993 short chain dehydroge 62.9 47 0.001 31.2 8.9 64 177-246 6-69 (277)
110 PRK07985 oxidoreductase; Provi 62.8 65 0.0014 30.8 9.9 57 177-233 51-107 (294)
111 PRK05693 short chain dehydroge 62.7 68 0.0015 29.9 9.9 64 177-246 3-66 (274)
112 PRK12828 short chain dehydroge 61.9 72 0.0016 28.5 9.7 55 177-233 9-63 (239)
113 PRK07478 short chain dehydroge 61.6 61 0.0013 29.7 9.2 55 177-233 8-62 (254)
114 PF08659 KR: KR domain; Inter 61.1 1.2E+02 0.0025 26.8 12.9 58 177-234 2-61 (181)
115 TIGR01316 gltA glutamate synth 60.5 32 0.00069 35.4 7.7 53 177-230 274-328 (449)
116 PF00764 Arginosuc_synth: Argi 60.3 1.5E+02 0.0032 30.3 12.2 55 179-233 1-59 (388)
117 PRK06463 fabG 3-ketoacyl-(acyl 60.1 1.1E+02 0.0023 28.2 10.6 67 177-248 9-75 (255)
118 PRK07035 short chain dehydroge 60.1 73 0.0016 29.1 9.5 54 177-232 10-63 (252)
119 PRK12937 short chain dehydroge 59.7 73 0.0016 28.8 9.3 57 177-234 7-63 (245)
120 PRK05866 short chain dehydroge 59.5 64 0.0014 30.8 9.2 55 177-233 42-96 (293)
121 PRK08226 short chain dehydroge 59.5 70 0.0015 29.5 9.3 55 176-233 7-61 (263)
122 PRK07370 enoyl-(acyl carrier p 59.2 64 0.0014 30.0 9.0 64 185-248 18-83 (258)
123 PRK06172 short chain dehydroge 59.1 71 0.0015 29.2 9.2 56 176-233 8-63 (253)
124 PRK08063 enoyl-(acyl carrier p 58.9 51 0.0011 30.0 8.2 57 177-234 6-62 (250)
125 PRK12744 short chain dehydroge 58.7 86 0.0019 28.8 9.7 57 177-233 10-68 (257)
126 TIGR02415 23BDH acetoin reduct 58.6 83 0.0018 28.7 9.6 56 177-234 2-57 (254)
127 TIGR01832 kduD 2-deoxy-D-gluco 58.6 85 0.0018 28.5 9.6 53 177-233 7-59 (248)
128 PF01884 PcrB: PcrB family; I 58.3 48 0.001 31.3 7.8 80 158-239 137-218 (230)
129 PRK06114 short chain dehydroge 57.6 1E+02 0.0022 28.3 10.0 56 177-233 10-65 (254)
130 PF03808 Glyco_tran_WecB: Glyc 57.5 78 0.0017 28.0 8.8 100 188-304 13-113 (172)
131 PRK08017 oxidoreductase; Provi 57.4 74 0.0016 29.0 9.0 51 177-233 4-54 (256)
132 PRK06947 glucose-1-dehydrogena 57.4 97 0.0021 28.1 9.8 56 177-233 4-59 (248)
133 PRK07097 gluconate 5-dehydroge 57.2 86 0.0019 29.0 9.5 55 177-233 12-66 (265)
134 PRK05867 short chain dehydroge 57.1 81 0.0018 28.9 9.3 55 177-233 11-65 (253)
135 PRK12831 putative oxidoreducta 57.1 39 0.00085 34.9 7.7 52 177-229 283-336 (464)
136 PRK08936 glucose-1-dehydrogena 56.8 1.1E+02 0.0023 28.2 10.1 56 177-233 9-64 (261)
137 PF01262 AlaDh_PNT_C: Alanine 56.7 65 0.0014 28.3 8.1 48 179-232 23-70 (168)
138 PRK08628 short chain dehydroge 56.7 1E+02 0.0022 28.3 9.8 56 177-235 9-64 (258)
139 PRK06194 hypothetical protein; 56.5 1E+02 0.0022 28.8 9.9 57 177-235 8-64 (287)
140 PRK08993 2-deoxy-D-gluconate 3 56.1 1.1E+02 0.0024 28.1 10.0 53 177-233 12-64 (253)
141 PF00702 Hydrolase: haloacid d 55.8 34 0.00074 30.3 6.3 70 164-239 133-209 (215)
142 PRK08643 acetoin reductase; Va 55.7 1E+02 0.0022 28.2 9.7 56 177-234 4-59 (256)
143 PRK07454 short chain dehydroge 55.4 84 0.0018 28.5 9.0 55 177-233 8-62 (241)
144 PRK06079 enoyl-(acyl carrier p 55.3 68 0.0015 29.7 8.4 31 177-207 9-41 (252)
145 PRK08303 short chain dehydroge 55.0 1.1E+02 0.0025 29.4 10.2 57 177-233 10-74 (305)
146 PRK07890 short chain dehydroge 54.9 86 0.0019 28.6 9.0 55 177-233 7-61 (258)
147 cd06533 Glyco_transf_WecG_TagA 54.8 1.1E+02 0.0024 27.1 9.3 101 188-304 11-111 (171)
148 PF00185 OTCace: Aspartate/orn 54.5 50 0.0011 28.9 7.0 52 185-238 13-70 (158)
149 PRK07666 fabG 3-ketoacyl-(acyl 54.4 1E+02 0.0023 27.8 9.4 57 176-234 8-64 (239)
150 PRK08862 short chain dehydroge 54.2 85 0.0019 28.7 8.8 53 177-231 7-59 (227)
151 PF13460 NAD_binding_10: NADH( 54.2 44 0.00095 29.0 6.6 31 179-209 2-32 (183)
152 PRK06077 fabG 3-ketoacyl-(acyl 54.0 1.2E+02 0.0027 27.4 9.8 56 177-233 8-63 (252)
153 PRK05876 short chain dehydroge 53.6 95 0.002 29.3 9.2 56 177-234 8-63 (275)
154 PF02887 PK_C: Pyruvate kinase 53.3 99 0.0021 25.4 8.2 62 164-233 6-68 (117)
155 PRK12938 acetyacetyl-CoA reduc 53.2 1.1E+02 0.0023 27.8 9.3 56 177-233 5-60 (246)
156 PF07279 DUF1442: Protein of u 53.1 1E+02 0.0023 28.8 9.0 56 169-226 34-94 (218)
157 PRK06181 short chain dehydroge 53.1 1.2E+02 0.0026 27.9 9.7 55 177-233 3-57 (263)
158 PLN03050 pyridoxine (pyridoxam 52.7 40 0.00087 32.0 6.4 52 177-228 62-117 (246)
159 PRK06949 short chain dehydroge 52.7 1.1E+02 0.0024 27.8 9.4 33 176-208 10-42 (258)
160 PRK07677 short chain dehydroge 52.6 1.2E+02 0.0025 27.8 9.5 55 177-233 3-57 (252)
161 PRK06701 short chain dehydroge 52.5 1.3E+02 0.0029 28.5 10.2 56 177-233 48-103 (290)
162 PRK06124 gluconate 5-dehydroge 52.3 1.1E+02 0.0024 28.0 9.3 55 177-233 13-67 (256)
163 PRK12429 3-hydroxybutyrate deh 51.9 1.4E+02 0.0031 27.0 9.9 56 177-234 6-61 (258)
164 TIGR03325 BphB_TodD cis-2,3-di 51.8 1.3E+02 0.0028 27.8 9.7 67 176-248 6-75 (262)
165 PRK05653 fabG 3-ketoacyl-(acyl 51.5 60 0.0013 29.2 7.3 58 176-235 6-63 (246)
166 PRK05557 fabG 3-ketoacyl-(acyl 51.0 1.5E+02 0.0033 26.5 9.9 58 177-235 7-64 (248)
167 PRK08217 fabG 3-ketoacyl-(acyl 50.8 1.2E+02 0.0026 27.3 9.3 55 177-233 7-61 (253)
168 PRK08416 7-alpha-hydroxysteroi 50.7 1.1E+02 0.0023 28.3 9.0 31 177-207 10-40 (260)
169 PRK12826 3-ketoacyl-(acyl-carr 50.5 1.3E+02 0.0027 27.2 9.3 57 177-235 8-64 (251)
170 PRK10669 putative cation:proto 50.5 58 0.0013 34.4 7.9 57 176-239 418-474 (558)
171 PRK07832 short chain dehydroge 50.5 1E+02 0.0022 28.7 8.9 50 177-228 2-51 (272)
172 cd08230 glucose_DH Glucose deh 50.3 60 0.0013 31.7 7.5 49 177-229 175-223 (355)
173 PRK09730 putative NAD(P)-bindi 50.3 1.6E+02 0.0034 26.5 9.9 58 177-235 3-60 (247)
174 PRK12745 3-ketoacyl-(acyl-carr 50.1 1.6E+02 0.0034 26.8 10.0 56 177-233 4-59 (256)
175 PRK08085 gluconate 5-dehydroge 50.1 1.3E+02 0.0028 27.5 9.4 55 177-233 11-65 (254)
176 PRK12939 short chain dehydroge 50.0 1.3E+02 0.0029 27.1 9.4 58 176-235 8-65 (250)
177 PRK12825 fabG 3-ketoacyl-(acyl 49.8 86 0.0019 28.1 8.0 58 177-235 8-65 (249)
178 KOG0025 Zn2+-binding dehydroge 49.7 70 0.0015 31.6 7.4 72 164-237 149-221 (354)
179 TIGR03206 benzo_BadH 2-hydroxy 49.7 1.3E+02 0.0027 27.3 9.2 56 177-234 5-60 (250)
180 PRK07792 fabG 3-ketoacyl-(acyl 49.6 1.5E+02 0.0033 28.3 10.1 58 177-235 14-71 (306)
181 PRK13656 trans-2-enoyl-CoA red 49.4 2.9E+02 0.0063 28.3 12.2 96 151-249 14-128 (398)
182 COG0078 ArgF Ornithine carbamo 49.2 81 0.0018 31.1 7.9 57 176-233 154-214 (310)
183 PRK07791 short chain dehydroge 48.6 1.5E+02 0.0032 28.1 9.8 57 177-233 8-71 (286)
184 PRK08261 fabG 3-ketoacyl-(acyl 48.5 1.7E+02 0.0036 29.8 10.7 68 177-248 212-280 (450)
185 PRK12935 acetoacetyl-CoA reduc 48.2 1.5E+02 0.0033 26.8 9.5 58 176-234 7-64 (247)
186 PRK06113 7-alpha-hydroxysteroi 48.1 1.5E+02 0.0033 27.1 9.5 56 176-233 12-67 (255)
187 PRK08278 short chain dehydroge 48.0 1.9E+02 0.0041 27.0 10.3 57 177-233 8-69 (273)
188 cd08301 alcohol_DH_plants Plan 47.8 1.3E+02 0.0028 29.6 9.4 49 176-230 189-237 (369)
189 PRK07063 short chain dehydroge 47.2 1.6E+02 0.0035 27.0 9.6 55 177-233 9-65 (260)
190 PRK05329 anaerobic glycerol-3- 46.9 2.9E+02 0.0062 28.4 12.0 30 176-207 4-33 (422)
191 TIGR03366 HpnZ_proposed putati 46.8 1.1E+02 0.0025 28.7 8.6 48 177-230 123-170 (280)
192 PF03853 YjeF_N: YjeF-related 46.7 1.7E+02 0.0037 25.8 9.2 57 176-232 26-88 (169)
193 CHL00194 ycf39 Ycf39; Provisio 46.6 79 0.0017 30.5 7.6 31 178-208 3-33 (317)
194 PRK05650 short chain dehydroge 46.5 1.5E+02 0.0033 27.5 9.3 56 177-234 2-57 (270)
195 PRK07814 short chain dehydroge 46.1 1.5E+02 0.0032 27.5 9.1 68 176-245 11-80 (263)
196 PRK08340 glucose-1-dehydrogena 45.9 1.5E+02 0.0033 27.2 9.2 30 178-207 3-32 (259)
197 PRK09291 short chain dehydroge 45.7 62 0.0013 29.6 6.5 59 177-237 4-62 (257)
198 PRK07806 short chain dehydroge 45.7 2.1E+02 0.0045 25.9 10.0 56 177-233 8-63 (248)
199 PRK08213 gluconate 5-dehydroge 45.6 1.6E+02 0.0034 27.0 9.2 58 176-235 13-70 (259)
200 PRK06138 short chain dehydroge 45.5 1.6E+02 0.0035 26.6 9.2 55 177-234 7-61 (252)
201 PRK07062 short chain dehydroge 44.6 2.1E+02 0.0045 26.3 9.9 32 177-208 10-41 (265)
202 TIGR01963 PHB_DH 3-hydroxybuty 44.6 2E+02 0.0043 26.0 9.7 57 177-235 3-59 (255)
203 PRK07326 short chain dehydroge 44.6 1.5E+02 0.0033 26.5 8.9 32 176-207 7-38 (237)
204 PF13450 NAD_binding_8: NAD(P) 44.5 39 0.00084 25.2 4.0 25 183-207 3-27 (68)
205 PRK12771 putative glutamate sy 44.4 42 0.0009 35.6 5.7 53 177-230 139-206 (564)
206 PRK06057 short chain dehydroge 44.0 2.2E+02 0.0047 26.0 9.9 64 177-246 9-73 (255)
207 PRK12824 acetoacetyl-CoA reduc 43.9 1.9E+02 0.0042 25.9 9.4 32 177-208 4-35 (245)
208 TIGR01292 TRX_reduct thioredox 43.7 87 0.0019 29.2 7.3 51 177-228 143-194 (300)
209 PRK08265 short chain dehydroge 43.7 2E+02 0.0043 26.6 9.6 53 176-233 7-59 (261)
210 PRK07775 short chain dehydroge 43.7 2.1E+02 0.0046 26.6 9.9 56 176-233 11-66 (274)
211 PLN02918 pyridoxine (pyridoxam 43.6 65 0.0014 34.3 6.8 52 177-228 137-192 (544)
212 TIGR01831 fabG_rel 3-oxoacyl-( 43.1 1.7E+02 0.0038 26.2 9.0 55 179-234 2-56 (239)
213 PRK12859 3-ketoacyl-(acyl-carr 42.6 1.8E+02 0.004 26.7 9.2 64 185-248 18-92 (256)
214 PF01041 DegT_DnrJ_EryC1: DegT 42.3 70 0.0015 31.6 6.6 61 169-233 34-94 (363)
215 TIGR02825 B4_12hDH leukotriene 42.1 93 0.002 29.8 7.3 49 176-230 140-188 (325)
216 PRK09242 tropinone reductase; 41.9 1.9E+02 0.0042 26.4 9.2 56 177-234 11-68 (257)
217 PRK06198 short chain dehydroge 41.9 2E+02 0.0043 26.3 9.3 56 177-233 8-63 (260)
218 PRK12748 3-ketoacyl-(acyl-carr 41.8 2.4E+02 0.0051 25.8 9.8 50 185-234 17-75 (256)
219 PRK10538 malonic semialdehyde 41.8 2E+02 0.0044 26.2 9.3 52 177-234 2-54 (248)
220 PRK07774 short chain dehydroge 41.7 2.1E+02 0.0045 25.9 9.3 32 177-208 8-39 (250)
221 TIGR01829 AcAcCoA_reduct aceto 41.5 2.4E+02 0.0052 25.2 9.7 58 177-235 2-59 (242)
222 TIGR02818 adh_III_F_hyde S-(hy 41.4 1.8E+02 0.0039 28.6 9.4 49 176-230 187-235 (368)
223 PRK06505 enoyl-(acyl carrier p 41.4 1.8E+02 0.0039 27.3 9.0 21 186-206 20-40 (271)
224 PRK06953 short chain dehydroge 41.3 2.3E+02 0.005 25.3 9.4 57 177-239 3-59 (222)
225 PF02254 TrkA_N: TrkA-N domain 41.2 1.7E+02 0.0038 23.2 7.8 50 182-237 4-53 (116)
226 cd01078 NAD_bind_H4MPT_DH NADP 41.2 2.6E+02 0.0056 24.8 10.2 31 176-206 29-59 (194)
227 cd01011 nicotinamidase Nicotin 41.1 1.4E+02 0.0029 27.0 7.8 59 170-228 133-195 (196)
228 COG0026 PurK Phosphoribosylami 41.1 1E+02 0.0022 31.3 7.3 28 183-210 8-35 (375)
229 PRK05565 fabG 3-ketoacyl-(acyl 41.0 2.2E+02 0.0048 25.5 9.3 58 177-235 7-64 (247)
230 PRK07060 short chain dehydroge 40.8 2.2E+02 0.0047 25.6 9.3 51 177-233 11-62 (245)
231 PRK12778 putative bifunctional 40.6 95 0.0021 34.2 7.9 53 177-230 572-627 (752)
232 PRK05717 oxidoreductase; Valid 40.6 2.5E+02 0.0055 25.6 9.8 53 177-234 12-64 (255)
233 cd08300 alcohol_DH_class_III c 40.4 1.9E+02 0.0042 28.4 9.4 49 176-230 188-236 (368)
234 PRK07231 fabG 3-ketoacyl-(acyl 40.3 1.3E+02 0.0029 27.1 7.8 32 177-208 7-38 (251)
235 PRK06924 short chain dehydroge 40.0 1.5E+02 0.0032 27.0 8.0 32 177-208 3-34 (251)
236 PRK07067 sorbitol dehydrogenas 39.9 2.1E+02 0.0045 26.2 9.1 31 177-207 8-38 (257)
237 PRK08159 enoyl-(acyl carrier p 39.9 2.2E+02 0.0047 26.7 9.4 22 185-206 22-43 (272)
238 PRK06123 short chain dehydroge 39.7 2.4E+02 0.0052 25.4 9.4 56 177-233 4-59 (248)
239 COG1063 Tdh Threonine dehydrog 39.7 3.8E+02 0.0083 26.4 12.8 51 178-233 171-222 (350)
240 TIGR03845 sulfopyru_alph sulfo 39.3 2.6E+02 0.0057 24.4 9.8 34 173-206 56-91 (157)
241 PRK09134 short chain dehydroge 39.0 2.8E+02 0.006 25.4 9.8 57 177-234 11-67 (258)
242 PRK07825 short chain dehydroge 39.0 2.1E+02 0.0045 26.5 9.0 30 177-206 7-36 (273)
243 PRK06603 enoyl-(acyl carrier p 38.9 2.3E+02 0.0049 26.3 9.2 60 186-248 21-82 (260)
244 PRK08251 short chain dehydroge 38.7 2.6E+02 0.0056 25.3 9.5 31 177-207 4-34 (248)
245 PRK13982 bifunctional SbtC-lik 38.7 1E+02 0.0022 32.3 7.3 45 180-233 277-321 (475)
246 PRK11891 aspartate carbamoyltr 38.6 1E+02 0.0022 31.9 7.2 56 177-233 243-301 (429)
247 PRK07201 short chain dehydroge 38.2 1.8E+02 0.0038 31.0 9.4 56 177-234 373-428 (657)
248 PRK11749 dihydropyrimidine deh 38.2 1.2E+02 0.0027 30.9 7.9 52 177-229 275-329 (457)
249 PRK05854 short chain dehydroge 38.2 2.5E+02 0.0054 27.0 9.6 31 177-207 16-46 (313)
250 cd08291 ETR_like_1 2-enoyl thi 38.2 1.2E+02 0.0026 29.0 7.4 50 176-231 145-194 (324)
251 PRK12827 short chain dehydroge 37.9 2.7E+02 0.0059 24.9 9.4 59 177-235 8-68 (249)
252 smart00822 PKS_KR This enzymat 37.9 2.1E+02 0.0045 23.7 8.1 58 178-235 3-62 (180)
253 PRK06200 2,3-dihydroxy-2,3-dih 37.8 2.4E+02 0.0052 25.9 9.2 30 177-206 8-37 (263)
254 PRK06260 threonine synthase; V 37.8 4.4E+02 0.0096 26.6 12.5 36 175-210 218-261 (397)
255 PRK06841 short chain dehydroge 37.8 2.6E+02 0.0055 25.4 9.3 32 177-208 17-48 (255)
256 TIGR00696 wecB_tagA_cpsF bacte 37.7 2.3E+02 0.005 25.4 8.6 99 188-303 13-111 (177)
257 TIGR00561 pntA NAD(P) transhyd 37.6 1.6E+02 0.0035 31.1 8.6 49 177-232 166-214 (511)
258 PRK07904 short chain dehydroge 37.5 2.8E+02 0.0061 25.6 9.6 56 177-233 10-67 (253)
259 COG0300 DltE Short-chain dehyd 37.3 1.8E+02 0.0038 28.1 8.2 33 176-208 7-39 (265)
260 PRK00779 ornithine carbamoyltr 36.9 1E+02 0.0022 30.2 6.7 55 177-232 154-209 (304)
261 PRK08594 enoyl-(acyl carrier p 36.7 3.1E+02 0.0067 25.3 9.8 23 185-207 19-41 (257)
262 PF13561 adh_short_C2: Enoyl-( 36.7 90 0.002 28.5 6.0 65 183-249 4-69 (241)
263 TIGR01830 3oxo_ACP_reduc 3-oxo 36.5 2.7E+02 0.0059 24.7 9.1 55 179-234 2-56 (239)
264 PRK07074 short chain dehydroge 36.5 2.4E+02 0.0052 25.7 8.9 31 177-207 4-34 (257)
265 PRK08415 enoyl-(acyl carrier p 36.4 3.2E+02 0.0068 25.7 9.9 61 185-248 17-79 (274)
266 PRK04965 NADH:flavorubredoxin 36.4 1.8E+02 0.0038 28.8 8.5 52 177-229 143-201 (377)
267 PRK06180 short chain dehydroge 36.4 2.2E+02 0.0048 26.5 8.8 32 176-207 5-36 (277)
268 PRK08264 short chain dehydroge 36.4 1.1E+02 0.0025 27.5 6.6 32 176-207 7-39 (238)
269 KOG1209 1-Acyl dihydroxyaceton 36.3 2.3E+02 0.0051 26.9 8.4 69 174-248 7-76 (289)
270 PRK12742 oxidoreductase; Provi 36.3 2.5E+02 0.0054 25.1 8.9 52 177-233 8-60 (237)
271 PRK06482 short chain dehydroge 36.3 2.1E+02 0.0047 26.4 8.7 31 177-207 4-34 (276)
272 PLN02253 xanthoxin dehydrogena 36.2 2.7E+02 0.0058 25.9 9.3 31 177-207 20-50 (280)
273 PRK05786 fabG 3-ketoacyl-(acyl 36.2 2.5E+02 0.0054 25.1 8.8 32 177-208 7-38 (238)
274 PF02737 3HCDH_N: 3-hydroxyacy 35.9 53 0.0012 29.4 4.2 26 183-208 6-31 (180)
275 PRK03562 glutathione-regulated 35.9 1.3E+02 0.0027 32.6 7.7 54 176-236 401-454 (621)
276 COG1184 GCD2 Translation initi 35.8 93 0.002 30.6 6.1 56 177-232 121-177 (301)
277 PF00890 FAD_binding_2: FAD bi 35.7 51 0.0011 33.0 4.5 26 183-208 6-31 (417)
278 cd08256 Zn_ADH2 Alcohol dehydr 35.7 1.5E+02 0.0032 28.7 7.7 48 176-229 176-223 (350)
279 PRK12384 sorbitol-6-phosphate 35.6 3.2E+02 0.0069 24.9 9.6 31 177-207 4-34 (259)
280 PRK03659 glutathione-regulated 35.6 1.3E+02 0.0029 32.2 7.9 55 176-237 401-455 (601)
281 cd08294 leukotriene_B4_DH_like 35.5 1.1E+02 0.0024 29.0 6.6 49 176-230 145-193 (329)
282 PRK06500 short chain dehydroge 35.3 2.6E+02 0.0057 25.1 8.9 51 177-233 8-59 (249)
283 PRK09754 phenylpropionate diox 35.2 2.5E+02 0.0054 28.0 9.4 34 174-209 144-177 (396)
284 TIGR02822 adh_fam_2 zinc-bindi 35.2 1.3E+02 0.0027 29.3 7.1 46 177-229 168-213 (329)
285 cd01075 NAD_bind_Leu_Phe_Val_D 35.0 3E+02 0.0065 25.0 9.1 27 179-205 31-57 (200)
286 PRK06197 short chain dehydroge 35.0 2.3E+02 0.0049 26.9 8.7 33 176-208 17-49 (306)
287 PTZ00323 NAD+ synthase; Provis 34.9 2.3E+02 0.0049 27.7 8.6 63 171-233 42-113 (294)
288 PLN02583 cinnamoyl-CoA reducta 34.8 1E+02 0.0023 29.3 6.4 33 176-208 7-39 (297)
289 PRK08177 short chain dehydroge 34.6 3.4E+02 0.0073 24.3 9.9 32 177-208 3-34 (225)
290 PRK05875 short chain dehydroge 34.5 3E+02 0.0066 25.4 9.4 32 176-207 8-39 (276)
291 PRK09424 pntA NAD(P) transhydr 34.4 1.2E+02 0.0026 32.1 7.1 49 177-232 167-215 (509)
292 KOG0207 Cation transport ATPas 34.4 1.5E+02 0.0032 33.6 7.8 75 164-243 729-803 (951)
293 PRK05855 short chain dehydroge 34.4 2.6E+02 0.0056 28.8 9.6 56 176-233 316-371 (582)
294 PRK07984 enoyl-(acyl carrier p 34.4 2.6E+02 0.0057 26.1 8.9 60 186-248 19-80 (262)
295 PLN02740 Alcohol dehydrogenase 34.2 2.5E+02 0.0055 27.7 9.2 47 177-229 201-247 (381)
296 PLN00141 Tic62-NAD(P)-related 34.2 1.1E+02 0.0024 28.2 6.2 33 176-208 18-50 (251)
297 PRK05447 1-deoxy-D-xylulose 5- 34.2 5.2E+02 0.011 26.4 13.4 54 177-233 3-58 (385)
298 PRK07453 protochlorophyllide o 34.0 2.6E+02 0.0057 26.7 9.1 31 177-207 8-38 (322)
299 PRK01122 potassium-transportin 33.9 1.8E+02 0.004 31.9 8.6 74 164-242 451-524 (679)
300 PRK05872 short chain dehydroge 33.9 2.8E+02 0.0061 26.3 9.2 31 177-207 11-41 (296)
301 PF01494 FAD_binding_3: FAD bi 33.7 53 0.0012 31.2 4.1 30 178-208 4-33 (356)
302 cd00288 Pyruvate_Kinase Pyruva 33.6 2.9E+02 0.0064 29.0 9.7 40 167-208 368-407 (480)
303 PF13738 Pyr_redox_3: Pyridine 33.6 56 0.0012 28.8 4.0 26 183-208 4-30 (203)
304 PF12831 FAD_oxidored: FAD dep 33.4 50 0.0011 33.7 4.0 27 183-209 6-32 (428)
305 COG0436 Aspartate/tyrosine/aro 33.4 2.2E+02 0.0047 28.8 8.6 101 155-264 65-176 (393)
306 PRK08192 aspartate carbamoyltr 33.3 1.6E+02 0.0034 29.4 7.4 48 185-233 171-219 (338)
307 cd08295 double_bond_reductase_ 33.2 1.7E+02 0.0037 28.2 7.6 48 176-229 153-201 (338)
308 PRK07533 enoyl-(acyl carrier p 33.0 3E+02 0.0064 25.4 9.0 23 186-208 23-45 (258)
309 PRK06720 hypothetical protein; 33.0 3.4E+02 0.0074 23.8 9.5 54 177-232 18-71 (169)
310 PRK12779 putative bifunctional 32.9 1.4E+02 0.003 34.1 7.7 51 177-228 449-501 (944)
311 TIGR02819 fdhA_non_GSH formald 32.9 2.8E+02 0.0062 27.8 9.4 48 176-229 187-234 (393)
312 PRK12746 short chain dehydroge 32.8 2E+02 0.0044 26.1 7.8 57 176-233 7-63 (254)
313 PRK07831 short chain dehydroge 32.7 3.4E+02 0.0073 24.9 9.3 30 177-206 19-49 (262)
314 PF01134 GIDA: Glucose inhibit 32.7 55 0.0012 33.4 4.1 24 183-206 6-29 (392)
315 PRK14010 potassium-transportin 32.6 2.3E+02 0.0049 31.1 9.0 75 163-242 446-520 (673)
316 PRK09135 pteridine reductase; 32.6 3.5E+02 0.0076 24.2 9.3 32 177-208 8-39 (249)
317 PRK05370 argininosuccinate syn 32.6 5.9E+02 0.013 26.5 14.6 59 174-233 10-73 (447)
318 PTZ00354 alcohol dehydrogenase 32.6 2.2E+02 0.0047 26.8 8.2 50 176-231 142-191 (334)
319 PRK07576 short chain dehydroge 32.4 2.4E+02 0.0052 26.1 8.3 55 177-233 11-65 (264)
320 PRK11706 TDP-4-oxo-6-deoxy-D-g 32.4 1.7E+02 0.0036 29.1 7.6 58 172-233 43-100 (375)
321 KOG0023 Alcohol dehydrogenase, 32.2 2E+02 0.0044 28.8 7.7 46 183-233 189-234 (360)
322 PRK06179 short chain dehydroge 32.1 2.9E+02 0.0064 25.4 8.8 31 177-207 6-36 (270)
323 PLN02342 ornithine carbamoyltr 31.9 1.2E+02 0.0027 30.3 6.4 54 177-231 196-250 (348)
324 PRK13376 pyrB bifunctional asp 31.9 1.5E+02 0.0032 31.5 7.2 48 185-233 186-234 (525)
325 PRK09880 L-idonate 5-dehydroge 31.8 2E+02 0.0044 27.8 7.9 49 176-230 171-219 (343)
326 PLN02586 probable cinnamyl alc 31.8 2E+02 0.0044 28.3 8.0 47 177-229 186-232 (360)
327 PF02826 2-Hacid_dh_C: D-isome 31.5 86 0.0019 27.8 4.8 111 183-328 43-155 (178)
328 cd08296 CAD_like Cinnamyl alco 31.4 1.8E+02 0.0039 27.9 7.5 47 176-229 165-211 (333)
329 TIGR01809 Shik-DH-AROM shikima 31.4 1.7E+02 0.0036 28.2 7.1 65 142-208 88-157 (282)
330 PRK07024 short chain dehydroge 31.4 2.5E+02 0.0055 25.7 8.2 31 177-207 4-34 (257)
331 TIGR01377 soxA_mon sarcosine o 31.3 66 0.0014 31.5 4.4 25 183-207 7-31 (380)
332 PRK12747 short chain dehydroge 31.2 2.8E+02 0.0061 25.2 8.4 55 177-232 6-60 (252)
333 TIGR00658 orni_carb_tr ornithi 31.2 1.5E+02 0.0032 29.0 6.7 55 177-232 150-208 (304)
334 PRK07102 short chain dehydroge 31.2 1.9E+02 0.0041 26.2 7.2 56 177-234 3-59 (243)
335 PRK05884 short chain dehydroge 31.1 3.3E+02 0.0071 24.6 8.8 50 178-233 3-53 (223)
336 COG0329 DapA Dihydrodipicolina 31.1 2.7E+02 0.0058 27.1 8.5 57 154-210 52-110 (299)
337 PRK08220 2,3-dihydroxybenzoate 31.1 3.6E+02 0.0078 24.3 9.1 32 176-207 9-40 (252)
338 PRK04523 N-acetylornithine car 30.9 1.5E+02 0.0032 29.6 6.7 47 185-232 185-236 (335)
339 PRK08690 enoyl-(acyl carrier p 30.8 2.7E+02 0.0058 25.8 8.3 24 184-207 17-40 (261)
340 PRK06171 sorbitol-6-phosphate 30.7 2.6E+02 0.0056 25.7 8.1 33 176-208 10-42 (266)
341 PLN03154 putative allyl alcoho 30.7 1.7E+02 0.0038 28.6 7.3 49 176-230 160-209 (348)
342 cd01012 YcaC_related YcaC rela 30.6 2.9E+02 0.0063 23.7 8.0 59 171-229 84-146 (157)
343 PRK12809 putative oxidoreducta 30.5 82 0.0018 34.0 5.3 53 177-230 312-379 (639)
344 PF00732 GMC_oxred_N: GMC oxid 30.5 56 0.0012 30.9 3.6 36 293-330 1-36 (296)
345 PRK08339 short chain dehydroge 30.3 2.5E+02 0.0055 26.0 8.0 31 177-207 10-40 (263)
346 PRK07577 short chain dehydroge 30.2 3.9E+02 0.0085 23.7 9.4 32 177-208 5-36 (234)
347 PRK06196 oxidoreductase; Provi 30.1 3.5E+02 0.0077 25.8 9.2 31 177-207 28-58 (315)
348 PRK09126 hypothetical protein; 30.1 63 0.0014 31.9 4.0 24 183-206 10-33 (392)
349 PRK08642 fabG 3-ketoacyl-(acyl 30.0 3.5E+02 0.0075 24.4 8.8 31 177-207 7-37 (253)
350 PRK11609 nicotinamidase/pyrazi 29.9 2.8E+02 0.0062 25.0 8.1 59 171-229 138-202 (212)
351 COG2217 ZntA Cation transport 29.9 1.7E+02 0.0036 32.4 7.4 72 164-242 543-616 (713)
352 PRK06475 salicylate hydroxylas 29.8 74 0.0016 31.8 4.5 30 177-207 4-33 (400)
353 PRK09853 putative selenate red 29.7 1.6E+02 0.0034 33.9 7.4 52 177-229 541-607 (1019)
354 cd08277 liver_alcohol_DH_like 29.7 2.9E+02 0.0064 27.0 8.8 47 176-228 186-232 (365)
355 TIGR01289 LPOR light-dependent 29.7 3.4E+02 0.0073 26.1 9.0 31 177-207 5-36 (314)
356 PRK05599 hypothetical protein; 29.6 3.4E+02 0.0073 24.8 8.7 46 178-226 3-48 (246)
357 PRK15317 alkyl hydroperoxide r 29.6 1.6E+02 0.0036 30.7 7.2 33 177-210 353-385 (517)
358 PRK09186 flagellin modificatio 29.6 4.2E+02 0.0092 23.9 9.5 31 177-207 6-36 (256)
359 KOG2614 Kynurenine 3-monooxyge 29.5 80 0.0017 32.4 4.6 30 177-207 4-33 (420)
360 COG0604 Qor NADPH:quinone redu 29.3 2.3E+02 0.0049 27.9 7.8 50 176-231 144-193 (326)
361 PRK12770 putative glutamate sy 29.3 1.7E+02 0.0037 28.7 6.9 53 177-230 174-229 (352)
362 PRK08945 putative oxoacyl-(acy 29.3 1.5E+02 0.0032 27.0 6.2 31 177-207 14-44 (247)
363 PRK12810 gltD glutamate syntha 29.3 2.1E+02 0.0046 29.5 7.9 52 177-229 145-211 (471)
364 PRK08306 dipicolinate synthase 29.3 1.4E+02 0.0031 28.9 6.2 41 183-229 159-199 (296)
365 cd08270 MDR4 Medium chain dehy 29.2 2.3E+02 0.005 26.4 7.6 46 176-227 134-179 (305)
366 PTZ00331 alpha/beta hydrolase; 29.2 2.8E+02 0.006 25.4 7.9 60 170-229 141-204 (212)
367 PF00289 CPSase_L_chain: Carba 29.2 2.2E+02 0.0048 23.4 6.5 50 176-232 3-52 (110)
368 PRK01438 murD UDP-N-acetylmura 29.1 1.8E+02 0.0038 30.0 7.3 51 177-229 18-68 (480)
369 TIGR01064 pyruv_kin pyruvate k 28.9 4.8E+02 0.01 27.3 10.4 42 165-208 364-405 (473)
370 PRK12814 putative NADPH-depend 28.9 1.8E+02 0.0039 31.5 7.6 52 177-229 325-379 (652)
371 PRK08703 short chain dehydroge 28.9 1.7E+02 0.0036 26.4 6.4 33 176-208 7-39 (239)
372 PF00857 Isochorismatase: Isoc 28.9 1.8E+02 0.0039 25.0 6.4 61 170-230 107-171 (174)
373 PRK05571 ribose-5-phosphate is 28.9 4E+02 0.0086 23.4 9.1 64 176-249 60-127 (148)
374 cd08242 MDR_like Medium chain 28.9 1.8E+02 0.0039 27.6 6.9 46 176-228 157-202 (319)
375 KOG1205 Predicted dehydrogenas 28.8 5.5E+02 0.012 25.0 10.3 56 174-233 12-70 (282)
376 TIGR03649 ergot_EASG ergot alk 28.7 1.2E+02 0.0026 28.4 5.6 31 178-208 2-32 (285)
377 PLN02527 aspartate carbamoyltr 28.6 2E+02 0.0042 28.3 7.1 47 186-233 164-211 (306)
378 cd08281 liver_ADH_like1 Zinc-d 28.5 2.1E+02 0.0045 28.2 7.4 48 176-229 193-240 (371)
379 cd08297 CAD3 Cinnamyl alcohol 28.4 2E+02 0.0043 27.6 7.1 48 176-229 167-214 (341)
380 PRK06101 short chain dehydroge 28.2 4.1E+02 0.0089 24.0 9.0 31 177-207 3-33 (240)
381 cd08289 MDR_yhfp_like Yhfp put 28.2 1.6E+02 0.0035 27.8 6.5 48 176-229 148-195 (326)
382 TIGR01119 lacB galactose-6-pho 28.2 3.4E+02 0.0073 24.5 7.9 63 176-248 59-125 (171)
383 PF00465 Fe-ADH: Iron-containi 28.2 2.6E+02 0.0057 27.6 8.1 86 203-306 3-91 (366)
384 cd08231 MDR_TM0436_like Hypoth 27.9 1.7E+02 0.0036 28.5 6.6 45 177-228 180-225 (361)
385 PRK05249 soluble pyridine nucl 27.8 2.7E+02 0.0058 28.3 8.3 53 176-229 176-234 (461)
386 COG1064 AdhP Zn-dependent alco 27.8 2.8E+02 0.006 27.8 8.0 51 177-233 168-218 (339)
387 PF13738 Pyr_redox_3: Pyridine 27.7 78 0.0017 27.8 3.9 33 176-209 168-200 (203)
388 PRK02255 putrescine carbamoylt 27.6 2.1E+02 0.0046 28.5 7.2 55 177-232 156-214 (338)
389 cd08288 MDR_yhdh Yhdh putative 27.5 2.5E+02 0.0054 26.4 7.6 48 176-229 148-195 (324)
390 TIGR00465 ilvC ketol-acid redu 27.5 1.6E+02 0.0036 28.9 6.4 41 183-228 10-50 (314)
391 PRK15481 transcriptional regul 27.4 6.4E+02 0.014 25.3 12.7 72 155-233 121-194 (431)
392 PF09338 Gly_reductase: Glycin 27.4 1.9E+02 0.0042 29.8 6.9 55 154-208 283-341 (428)
393 PRK06847 hypothetical protein; 27.3 93 0.002 30.4 4.7 29 177-206 6-34 (375)
394 cd08240 6_hydroxyhexanoate_dh_ 27.3 2.6E+02 0.0057 26.9 7.9 47 176-228 177-223 (350)
395 cd00401 AdoHcyase S-adenosyl-L 27.2 1.7E+02 0.0037 30.1 6.6 43 181-229 207-249 (413)
396 TIGR01317 GOGAT_sm_gam glutama 27.2 1.7E+02 0.0037 30.4 6.8 52 177-229 145-211 (485)
397 PRK06753 hypothetical protein; 27.1 79 0.0017 31.0 4.1 28 178-206 3-30 (373)
398 TIGR01988 Ubi-OHases Ubiquinon 27.1 72 0.0016 31.1 3.9 26 183-208 6-31 (385)
399 cd08292 ETR_like_2 2-enoyl thi 27.1 2.3E+02 0.0049 26.7 7.2 46 177-228 142-187 (324)
400 TIGR01470 cysG_Nterm siroheme 26.9 2.6E+02 0.0056 25.6 7.2 55 174-236 9-63 (205)
401 TIGR00689 rpiB_lacA_lacB sugar 26.8 4.3E+02 0.0093 23.0 9.1 68 172-249 52-124 (144)
402 PRK08849 2-octaprenyl-3-methyl 26.8 80 0.0017 31.3 4.1 28 178-206 6-33 (384)
403 PRK12266 glpD glycerol-3-phosp 26.7 84 0.0018 32.9 4.4 30 176-207 8-37 (508)
404 cd08246 crotonyl_coA_red croto 26.5 1.6E+02 0.0034 29.2 6.2 48 176-229 195-242 (393)
405 TIGR00521 coaBC_dfp phosphopan 26.5 92 0.002 31.7 4.5 26 183-208 209-234 (390)
406 PF02540 NAD_synthase: NAD syn 26.5 3.8E+02 0.0082 25.2 8.4 64 170-233 13-81 (242)
407 PF01488 Shikimate_DH: Shikima 26.4 1.2E+02 0.0025 25.7 4.5 29 177-206 14-42 (135)
408 cd05280 MDR_yhdh_yhfp Yhdh and 26.3 3.2E+02 0.007 25.6 8.1 48 176-229 148-195 (325)
409 PF01266 DAO: FAD dependent ox 26.3 87 0.0019 29.7 4.2 26 183-208 6-31 (358)
410 PRK12548 shikimate 5-dehydroge 26.2 2.5E+02 0.0054 27.0 7.3 30 177-207 128-158 (289)
411 PRK05579 bifunctional phosphop 26.2 85 0.0018 32.0 4.2 26 183-208 212-237 (399)
412 PRK08622 galactose-6-phosphate 26.1 4.9E+02 0.011 23.5 8.8 67 172-248 54-125 (171)
413 PRK11101 glpA sn-glycerol-3-ph 26.1 86 0.0019 33.2 4.4 30 176-207 8-37 (546)
414 PRK07818 dihydrolipoamide dehy 26.0 1.8E+02 0.0039 29.8 6.7 53 176-229 173-231 (466)
415 TIGR02379 ECA_wecE TDP-4-keto- 26.0 2.3E+02 0.0051 28.3 7.3 58 172-233 43-100 (376)
416 PRK06125 short chain dehydroge 26.0 3.5E+02 0.0077 24.7 8.2 32 176-207 8-39 (259)
417 TIGR01292 TRX_reduct thioredox 25.8 1E+02 0.0022 28.8 4.4 25 183-207 7-31 (300)
418 PRK14027 quinate/shikimate deh 25.7 3.2E+02 0.0069 26.4 7.9 65 142-208 92-159 (283)
419 PRK06997 enoyl-(acyl carrier p 25.7 4.4E+02 0.0096 24.3 8.8 23 184-206 17-39 (260)
420 PRK10309 galactitol-1-phosphat 25.6 2.3E+02 0.005 27.3 7.1 47 177-229 163-209 (347)
421 TIGR02032 GG-red-SF geranylger 25.6 92 0.002 28.9 4.1 26 183-208 7-32 (295)
422 TIGR03451 mycoS_dep_FDH mycoth 25.5 2.6E+02 0.0057 27.2 7.5 47 176-228 178-224 (358)
423 TIGR03143 AhpF_homolog putativ 25.4 2.3E+02 0.0049 30.0 7.4 34 176-210 144-177 (555)
424 TIGR02374 nitri_red_nirB nitri 25.4 3.1E+02 0.0068 30.4 8.8 52 177-229 142-200 (785)
425 PRK08227 autoinducer 2 aldolas 25.4 6.1E+02 0.013 24.4 9.8 91 164-259 97-200 (264)
426 PRK08267 short chain dehydroge 25.4 3.3E+02 0.0072 24.8 7.9 31 177-207 3-33 (260)
427 PRK08274 tricarballylate dehyd 25.4 94 0.002 31.8 4.4 29 176-206 6-34 (466)
428 cd08274 MDR9 Medium chain dehy 25.3 2.6E+02 0.0057 26.7 7.4 48 176-230 179-226 (350)
429 PRK02102 ornithine carbamoyltr 25.3 2.4E+02 0.0052 28.1 7.1 54 177-232 157-216 (331)
430 TIGR01751 crot-CoA-red crotony 25.2 1.7E+02 0.0037 29.1 6.2 49 176-230 191-239 (398)
431 PLN03049 pyridoxine (pyridoxam 25.2 3.3E+02 0.0072 28.4 8.4 52 177-228 61-116 (462)
432 PLN02827 Alcohol dehydrogenase 25.1 4.9E+02 0.011 25.7 9.5 47 177-229 196-242 (378)
433 cd08233 butanediol_DH_like (2R 25.1 3E+02 0.0066 26.5 7.8 48 177-230 175-222 (351)
434 cd08284 FDH_like_2 Glutathione 25.0 3.1E+02 0.0067 26.2 7.8 47 176-228 169-215 (344)
435 PRK07856 short chain dehydroge 25.0 3.9E+02 0.0084 24.3 8.2 31 177-207 8-38 (252)
436 PRK06484 short chain dehydroge 24.9 4E+02 0.0087 27.4 9.1 66 177-247 7-74 (520)
437 PRK04284 ornithine carbamoyltr 24.8 2E+02 0.0044 28.5 6.5 47 185-232 166-216 (332)
438 COG0021 TktA Transketolase [Ca 24.8 6.6E+02 0.014 27.5 10.5 122 178-300 151-290 (663)
439 PF13407 Peripla_BP_4: Peripla 24.7 5.2E+02 0.011 23.3 9.9 39 195-234 51-89 (257)
440 PF01212 Beta_elim_lyase: Beta 24.7 1E+02 0.0022 30.0 4.2 74 279-363 32-106 (290)
441 TIGR00511 ribulose_e2b2 ribose 24.6 1.9E+02 0.0042 28.2 6.2 43 190-232 130-173 (301)
442 PLN02464 glycerol-3-phosphate 24.6 1.2E+02 0.0025 32.9 5.1 30 176-207 73-102 (627)
443 cd01563 Thr-synth_1 Threonine 24.6 6.4E+02 0.014 24.3 13.5 36 175-210 172-215 (324)
444 PRK12775 putative trifunctiona 24.5 2.2E+02 0.0048 32.7 7.5 52 177-229 573-627 (1006)
445 COG0492 TrxB Thioredoxin reduc 24.4 2.8E+02 0.006 27.2 7.3 50 173-224 142-191 (305)
446 PRK12769 putative oxidoreducta 24.4 2.7E+02 0.0058 30.2 7.8 53 177-230 470-525 (654)
447 TIGR03201 dearomat_had 6-hydro 24.3 1.8E+02 0.0039 28.3 6.1 47 177-230 169-215 (349)
448 cd01015 CSHase N-carbamoylsarc 24.2 3.2E+02 0.007 23.9 7.2 38 171-208 110-148 (179)
449 PRK12829 short chain dehydroge 24.2 5.2E+02 0.011 23.4 8.9 32 176-207 12-43 (264)
450 cd08239 THR_DH_like L-threonin 24.1 3.1E+02 0.0067 26.3 7.6 47 177-230 166-213 (339)
451 PRK13403 ketol-acid reductoiso 24.1 2E+02 0.0044 28.7 6.3 33 174-208 16-48 (335)
452 TIGR02685 pter_reduc_Leis pter 24.0 4.7E+02 0.01 24.0 8.7 31 177-207 3-33 (267)
453 PRK12562 ornithine carbamoyltr 24.0 2.5E+02 0.0054 28.0 6.9 47 186-233 168-218 (334)
454 PRK05976 dihydrolipoamide dehy 24.0 3.1E+02 0.0066 28.2 7.9 52 176-228 181-238 (472)
455 PRK13369 glycerol-3-phosphate 23.9 1E+02 0.0022 32.1 4.4 30 176-207 8-37 (502)
456 PF03279 Lip_A_acyltrans: Bact 23.9 4.1E+02 0.0088 25.2 8.3 66 168-234 114-180 (295)
457 cd08243 quinone_oxidoreductase 23.9 2.1E+02 0.0046 26.6 6.3 48 176-229 144-191 (320)
458 PRK09072 short chain dehydroge 23.8 2.4E+02 0.0052 25.9 6.6 31 177-207 7-37 (263)
459 cd08287 FDH_like_ADH3 formalde 23.8 2.9E+02 0.0064 26.4 7.4 46 176-227 170-215 (345)
460 cd05188 MDR Medium chain reduc 23.8 2.2E+02 0.0048 25.6 6.3 45 177-228 137-181 (271)
461 TIGR02853 spore_dpaA dipicolin 23.7 2E+02 0.0044 27.8 6.1 45 177-228 153-197 (287)
462 PLN02178 cinnamyl-alcohol dehy 23.6 2.4E+02 0.0052 28.0 6.9 48 176-229 180-227 (375)
463 TIGR00292 thiazole biosynthesi 23.5 1.2E+02 0.0026 28.8 4.4 30 175-206 22-51 (254)
464 PRK05868 hypothetical protein; 23.4 1E+02 0.0022 30.6 4.2 28 178-206 4-31 (372)
465 COG1433 Uncharacterized conser 23.3 2.9E+02 0.0063 23.4 6.3 48 188-240 54-102 (121)
466 cd08293 PTGR2 Prostaglandin re 23.3 2.1E+02 0.0044 27.5 6.2 50 176-231 156-207 (345)
467 KOG1201 Hydroxysteroid 17-beta 23.2 7.3E+02 0.016 24.5 10.5 63 177-242 40-105 (300)
468 TIGR01120 rpiB ribose 5-phosph 23.1 5E+02 0.011 22.6 9.0 64 176-249 58-125 (143)
469 TIGR01318 gltD_gamma_fam gluta 23.1 2.9E+02 0.0062 28.5 7.5 52 177-229 143-209 (467)
470 PRK12613 galactose-6-phosphate 23.1 3.9E+02 0.0084 23.3 7.1 64 176-249 56-123 (141)
471 PRK07538 hypothetical protein; 23.0 1E+02 0.0022 30.9 4.1 24 183-206 7-30 (413)
472 PF02670 DXP_reductoisom: 1-de 22.9 4.8E+02 0.01 22.3 12.4 110 180-316 3-114 (129)
473 TIGR03385 CoA_CoA_reduc CoA-di 22.9 3.8E+02 0.0082 26.9 8.3 53 176-229 138-197 (427)
474 PRK07023 short chain dehydroge 22.9 2.4E+02 0.0051 25.5 6.3 51 177-234 3-53 (243)
475 PRK08013 oxidoreductase; Provi 22.8 98 0.0021 30.9 3.9 29 178-207 6-34 (400)
476 PF13580 SIS_2: SIS domain; PD 22.8 1.2E+02 0.0027 25.6 4.0 31 176-206 105-137 (138)
477 PRK08850 2-octaprenyl-6-methox 22.8 99 0.0022 30.9 4.0 28 178-206 7-34 (405)
478 TIGR02360 pbenz_hydroxyl 4-hyd 22.8 1.2E+02 0.0026 30.3 4.5 25 183-207 9-33 (390)
479 PRK14805 ornithine carbamoyltr 22.8 2.7E+02 0.006 27.2 6.9 56 177-233 149-208 (302)
480 PLN03209 translocon at the inn 22.8 4.2E+02 0.0092 28.5 8.7 33 176-208 81-113 (576)
481 PRK10015 oxidoreductase; Provi 22.7 1.1E+02 0.0024 31.1 4.4 29 176-206 7-35 (429)
482 TIGR02817 adh_fam_1 zinc-bindi 22.6 3.4E+02 0.0074 25.7 7.6 48 177-230 151-199 (336)
483 PRK15317 alkyl hydroperoxide r 22.6 1.2E+02 0.0025 31.8 4.6 25 183-207 218-242 (517)
484 COG0654 UbiH 2-polyprenyl-6-me 22.5 1E+02 0.0023 30.7 4.0 48 178-226 5-60 (387)
485 PRK08335 translation initiatio 22.5 2.4E+02 0.0051 27.4 6.3 40 193-232 127-167 (275)
486 KOG2585 Uncharacterized conser 22.4 1.2E+02 0.0025 31.5 4.3 33 178-210 269-304 (453)
487 PRK08163 salicylate hydroxylas 22.4 1.1E+02 0.0023 30.3 4.1 29 178-207 7-35 (396)
488 COG0399 WecE Predicted pyridox 22.4 3.3E+02 0.0071 27.7 7.5 62 169-234 43-104 (374)
489 PRK07251 pyridine nucleotide-d 22.4 2.3E+02 0.005 28.6 6.6 52 177-229 159-216 (438)
490 TIGR01118 lacA galactose-6-pho 22.4 2.3E+02 0.005 24.7 5.6 64 176-249 57-124 (141)
491 cd08285 NADP_ADH NADP(H)-depen 22.3 3.3E+02 0.0073 26.2 7.5 47 176-228 168-214 (351)
492 PRK09257 aromatic amino acid a 22.2 7.7E+02 0.017 24.4 10.6 76 151-232 65-148 (396)
493 PRK14106 murD UDP-N-acetylmura 22.1 2.5E+02 0.0055 28.4 6.8 51 177-229 7-57 (450)
494 PF00478 IMPDH: IMP dehydrogen 22.1 2.6E+02 0.0056 28.2 6.6 114 215-350 110-240 (352)
495 PRK06115 dihydrolipoamide dehy 22.1 2.4E+02 0.0052 29.0 6.7 53 176-229 175-233 (466)
496 PF03807 F420_oxidored: NADP o 22.1 3.6E+02 0.0079 20.5 6.9 43 183-230 6-52 (96)
497 PRK07494 2-octaprenyl-6-methox 22.0 1E+02 0.0022 30.5 3.8 30 178-208 10-39 (388)
498 PRK13984 putative oxidoreducta 22.0 2.8E+02 0.006 29.6 7.3 52 177-229 285-351 (604)
499 cd08258 Zn_ADH4 Alcohol dehydr 21.9 3.8E+02 0.0083 25.4 7.7 47 176-227 166-212 (306)
500 TIGR01318 gltD_gamma_fam gluta 21.9 3.3E+02 0.0071 28.1 7.7 52 177-229 284-338 (467)
No 1
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-76 Score=557.37 Aligned_cols=299 Identities=58% Similarity=1.000 Sum_probs=292.5
Q ss_pred CCCCCCCcCCCCccccccchhhhHHHHHHHHHhhhCCchHHHHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEE
Q 017391 68 WKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYL 147 (372)
Q Consensus 68 ~~d~~~~~g~~gG~y~Pe~l~~~~~~L~~~~~~~~~~~~f~~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~Iyl 147 (372)
.||.+|+||.|||+||||+|++++.+|+.+|.+...|++|++||...+++|+||||||+..++|++.+ +.+||+
T Consensus 2 ~~~~~g~fG~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a~~Lt~~~------gakiyL 75 (396)
T COG0133 2 YPDEKGYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERLTEHL------GAKIYL 75 (396)
T ss_pred CCccCCcccccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhh------CceEEE
Confidence 36889999999999999999999999999999999999999999999999999999999999999998 699999
Q ss_pred eecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCE
Q 017391 148 KREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 227 (372)
Q Consensus 148 K~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~ 227 (372)
||||+|+||+||.++++.++++|+++||+++|+++++|+||+|.|.+|+++|++|+|||...++.+++.|+.+|+.+||+
T Consensus 76 KREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~ 155 (396)
T COG0133 76 KREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAE 155 (396)
T ss_pred ehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcC---chhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchh
Q 017391 228 VKAVDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGS 304 (372)
Q Consensus 228 Vi~v~~---~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG 304 (372)
|+.|.. ++.||+++|+|+|+.+....+|+++++.+|||||.+|+++|+++|.|+.+|+.++.|+.||+||.|||+|+
T Consensus 156 V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGS 235 (396)
T COG0133 156 VVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGS 235 (396)
T ss_pred EEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCc
Confidence 999965 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCCCcEEEEEecCCCCCCCccccccccCCCceeecCcceeeeeCCCCcccccccccCC
Q 017391 305 NALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG 372 (372)
Q Consensus 305 ~laGi~~~~~~~~~vrvigVe~~gs~~~~~~~a~~l~~G~~gv~~g~~~~~l~d~~~~~~~~~si~~~ 372 (372)
|+.|++..|..++.|++||||+.|.++.++.|+++|+.|.+||+||+++|+|||++|||.++||||||
T Consensus 236 NAiG~F~~Fi~d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAG 303 (396)
T COG0133 236 NAIGIFHPFIDDESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAG 303 (396)
T ss_pred chhhhcccccCCCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccC
Confidence 99999999998899999999999999999999999999999999999999999999999999999998
No 2
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1.1e-68 Score=535.16 Aligned_cols=300 Identities=61% Similarity=1.014 Sum_probs=283.5
Q ss_pred CCCCCCCcCCCCccccccchhhhHHHHHHHHHhhhCCchHHHHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEE
Q 017391 68 WKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYL 147 (372)
Q Consensus 68 ~~d~~~~~g~~gG~y~Pe~l~~~~~~L~~~~~~~~~~~~f~~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~Iyl 147 (372)
.+|.+|+||+|||.|+||+|++.+.+|+.+|.+.+.|+.|++|++..+++++++||||+++++|++.+ ++.+||+
T Consensus 4 ~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~grpTPL~~~~~Ls~~~-----gg~~Iyl 78 (397)
T PRK04346 4 LPDENGYFGEFGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFAERLSEHL-----GGAKIYL 78 (397)
T ss_pred CCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCceEhHHHHHHc-----CCCeEEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999987 4789999
Q ss_pred eecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCE
Q 017391 148 KREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 227 (372)
Q Consensus 148 K~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~ 227 (372)
|+|++|||||||+|+++.+++.|+++|++++|+++|+||||+|+|++|+++|++|+||||+.++++++.|+.+|+.+||+
T Consensus 79 K~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~ 158 (397)
T PRK04346 79 KREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAE 158 (397)
T ss_pred EECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCE
Confidence 99999999999999999999999999999999989999999999999999999999999997666667899999999999
Q ss_pred EEEEcC---chhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchh
Q 017391 228 VKAVDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGS 304 (372)
Q Consensus 228 Vi~v~~---~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG 304 (372)
|+.|+. +++|+.+++.++|+++..+.+|+++++.++|||+.++++||++++.|+.+|+.++.++.||+||+|+|+||
T Consensus 159 Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg 238 (397)
T PRK04346 159 VVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGS 238 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccH
Confidence 999985 78888888888888875677899999999999999999999999999999998877778999999999999
Q ss_pred HHHhhhhhhcCCCCcEEEEEecCCCCCCCccccccccCCCceeecCcceeeeeCCCCcccccccccCC
Q 017391 305 NALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG 372 (372)
Q Consensus 305 ~laGi~~~~~~~~~vrvigVe~~gs~~~~~~~a~~l~~G~~gv~~g~~~~~l~d~~~~~~~~~si~~~ 372 (372)
|++|++.+|+.++.+|||||||.|+++.++.|++++..|..+++||.++|++||++||+.++||||+|
T Consensus 239 ~~~Gi~~~f~~~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~g 306 (397)
T PRK04346 239 NAIGIFHPFIDDESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAG 306 (397)
T ss_pred hHHHHHHHHhhCCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeecc
Confidence 99999999988899999999999999999999999999999999999999999999999999999986
No 3
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=4.4e-67 Score=524.85 Aligned_cols=305 Identities=70% Similarity=1.174 Sum_probs=283.0
Q ss_pred CCCCCCCcCCCCccccccchhhhHHHHHHHHHhhhCCchHHHHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEE
Q 017391 68 WKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYL 147 (372)
Q Consensus 68 ~~d~~~~~g~~gG~y~Pe~l~~~~~~L~~~~~~~~~~~~f~~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~Iyl 147 (372)
.||.+|+||+|||.|+||+|++.+++|+.+|.+.+.|+.|++|+..++++++|++|||+++++|++.++..++++.+||+
T Consensus 12 ~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~Iyl 91 (410)
T PLN02618 12 RPDSFGRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYL 91 (410)
T ss_pred CCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEE
Confidence 36889999999999999999999999999999999999999999999999999999999999999987211112589999
Q ss_pred eecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCE
Q 017391 148 KREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 227 (372)
Q Consensus 148 K~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~ 227 (372)
|+|++|||||||+|+++.+++.|+++|++++|+++|+||||.|+|++|+.+|++|+||||+.++++++.|+.+|+.+||+
T Consensus 92 K~E~lnptGS~K~R~a~~~~l~A~~~g~~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~ 171 (410)
T PLN02618 92 KREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAE 171 (410)
T ss_pred EeCCCCCccchHHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCE
Confidence 99999999999999999999999999999999988899999999999999999999999997666667899999999999
Q ss_pred EEEE---cCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchh
Q 017391 228 VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGS 304 (372)
Q Consensus 228 Vi~v---~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG 304 (372)
|+.| +++++|+..++.++|+++..+.+|+++++.++|||+.+++++|+++|.|+.+|+.++.++.||+||+|+|+||
T Consensus 172 Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg 251 (410)
T PLN02618 172 VRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGS 251 (410)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence 9999 6789999878878888875678999999999999988899999999999999998878778999999999999
Q ss_pred HHHhhhhhhcCCCCcEEEEEecCCCCCCCccccccccCCCceeecCcceeeeeCCCCcccccccccCC
Q 017391 305 NALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG 372 (372)
Q Consensus 305 ~laGi~~~~~~~~~vrvigVe~~gs~~~~~~~a~~l~~G~~gv~~g~~~~~l~d~~~~~~~~~si~~~ 372 (372)
|++|++.+|+.++.+|||||||+|+++..+.|+++++.|..|++||.++|+|||++||+.++||||+|
T Consensus 252 ~~~Gi~~~f~~~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~g 319 (410)
T PLN02618 252 NAMGLFHEFIDDEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAG 319 (410)
T ss_pred HHHHHHHHHHhCCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhh
Confidence 99999999988899999999999999999999999999999999999999999999999999999976
No 4
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=8e-66 Score=515.39 Aligned_cols=300 Identities=53% Similarity=0.899 Sum_probs=281.3
Q ss_pred CCCCCCCcCCCCccccccchhhhHHHHHHHHHhhhCCchHHHHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEE
Q 017391 68 WKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYL 147 (372)
Q Consensus 68 ~~d~~~~~g~~gG~y~Pe~l~~~~~~L~~~~~~~~~~~~f~~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~Iyl 147 (372)
.+|.+|+||+|||.|+||+|++.+++|+.+|.+.+.|++|++|+...+++++++||||+++++|++.+ ++.+||+
T Consensus 8 ~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~pTPL~~~~~Ls~~~-----Gg~~Iyl 82 (402)
T PRK13028 8 MPDADGFFGEYGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHAKRLSEEL-----GGAQIYL 82 (402)
T ss_pred CCCCCCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeeehHHhHhhc-----CCCeEEE
Confidence 36889999999999999999999999999999999999999999999999999999999999999987 4689999
Q ss_pred eecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCE
Q 017391 148 KREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 227 (372)
Q Consensus 148 K~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~ 227 (372)
|+|++|||||||+|+++++++.|+++|++++|+++|+||||+|+|++|+.+|++|+||||+.+++++..|+.+|+.+||+
T Consensus 83 K~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAe 162 (402)
T PRK13028 83 KREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAE 162 (402)
T ss_pred EECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCE
Confidence 99999999999999999999999999998899888999999999999999999999999997766566789999999999
Q ss_pred EEEEcC---chhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchh
Q 017391 228 VKAVDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGS 304 (372)
Q Consensus 228 Vi~v~~---~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG 304 (372)
|+.|+. +++|+.+++++.|+++..+.+|+++++.++|||+.+++++|++++.|+.+|+.++.++.||+||+|+|+||
T Consensus 163 Vi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg 242 (402)
T PRK13028 163 VVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGS 242 (402)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchH
Confidence 999974 79999999888888765567899999889999998888999999999999998777777999999999999
Q ss_pred HHHhhhhhhcCCCCcEEEEEecCCCCCCCccccccccCCCceeecCcceeeeeCCCCcccccccccCC
Q 017391 305 NALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG 372 (372)
Q Consensus 305 ~laGi~~~~~~~~~vrvigVe~~gs~~~~~~~a~~l~~G~~gv~~g~~~~~l~d~~~~~~~~~si~~~ 372 (372)
|++|++.+|+.++.+|||||||.|.++..+.|++++..|..+++||.++|+|||++||+.++||||+|
T Consensus 243 ~~~Gi~~~f~~~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~g 310 (402)
T PRK13028 243 NAIGLFSAFLDDESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAG 310 (402)
T ss_pred HHHHHHHHHHhCCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceecc
Confidence 99999999987789999999999998889999999999999999999999999999999999999986
No 5
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.4e-62 Score=515.25 Aligned_cols=298 Identities=50% Similarity=0.863 Sum_probs=272.3
Q ss_pred CCCCcCCCCccccccchhhhHHHHHHHHHhhhCCchHHHHHHHHhhcccCCCCCEEEccccchh----hhccCCCCCeeE
Q 017391 71 NPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDH----YRNEKGEGPEIY 146 (372)
Q Consensus 71 ~~~~~g~~gG~y~Pe~l~~~~~~L~~~~~~~~~~~~f~~~l~~~i~~~v~~~TPL~~l~~Ls~~----l~~~~~~~~~Iy 146 (372)
++|+||+|||.|+||+|++++.+|+.+|.+.+.|++||+|+...+++|+|+||||+++++|++. ++ ++.+||
T Consensus 275 ~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~G----~g~~Iy 350 (695)
T PRK13802 275 QGPYWGQFGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAERVKEKTG----LDARVF 350 (695)
T ss_pred CCCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCceeEchhhhhhhHhhcC----CCceEE
Confidence 5699999999999999999999999999999999999999999999999999999999998753 41 147999
Q ss_pred EeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCC
Q 017391 147 LKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGA 226 (372)
Q Consensus 147 lK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA 226 (372)
+|+|++|||||||||+++++++.|+++|+.++|+++||||||+|+|++|+++|++|+||||+.+..++..|+.+|+.+||
T Consensus 351 lK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGA 430 (695)
T PRK13802 351 LKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGA 430 (695)
T ss_pred EEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCC
Confidence 99999999999999999999999999999988989999999999999999999999999999765567889999999999
Q ss_pred EEEEEcC---chhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCC-CCCEEEEcCCc
Q 017391 227 QVKAVDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGG-KPDVLLACVGS 302 (372)
Q Consensus 227 ~Vi~v~~---~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~-~pd~vvvpvG~ 302 (372)
+|+.|+. +++++.+++.++|+++..+.+|++++++++|||+.++++||+++|.|+++|+.+..|. .||+||+|+|+
T Consensus 431 eVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGg 510 (695)
T PRK13802 431 EVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGG 510 (695)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCc
Confidence 9999983 6788887787888876556778889999999998888899999999999998654442 69999999999
Q ss_pred hhHHHhhhhhhcCCCCcEEEEEecCCCCCCCccccccccC--CCceeecCcceeeeeCCCCcccccccccCC
Q 017391 303 GSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAK--GEVGVYHGAMSYLLQDEEGQILGTHSVGVG 372 (372)
Q Consensus 303 GG~laGi~~~~~~~~~vrvigVe~~gs~~~~~~~a~~l~~--G~~gv~~g~~~~~l~d~~~~~~~~~si~~~ 372 (372)
|||++|++.+|+.++.+|||||||.+++...+.|+.+++. |.+|++||+++|+++|++||+.++||||+|
T Consensus 511 Gg~~~Gi~~~f~~~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~g 582 (695)
T PRK13802 511 GSNAIGVMNAFLDDERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAG 582 (695)
T ss_pred hHHHHHHHHHHHhCCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccc
Confidence 9999999999987889999999999998888888888875 679999999999999999999999999987
No 6
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.8e-62 Score=514.01 Aligned_cols=312 Identities=52% Similarity=0.917 Sum_probs=286.8
Q ss_pred CCcCcccccccCCCCCCCccCCCCCCCcCCCCccccccchhhhHHHHHHHHHhhhCCchHHHHHHHHhhcccCCCCCEEE
Q 017391 48 MRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYF 127 (372)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~~~~d~~~~~g~~gG~y~Pe~l~~~~~~L~~~~~~~~~~~~f~~~l~~~i~~~v~~~TPL~~ 127 (372)
+...|.+++- +.+.+|.+|+||+|||.|+||+|++.+++|+.+|.+.+.|+.|++||+..+++++++||||++
T Consensus 204 ki~~fi~~~k-------~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grpTPL~~ 276 (610)
T PRK13803 204 LLKSFITNVK-------KKYLSDPAGRYGTFGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNYAGRPTPLTE 276 (610)
T ss_pred HHHHHHHHHH-------HhhCCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCccee
Confidence 3345666665 456789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 128 AERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 128 l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+++|++.+ +.+||+|+|++|||||||+|+++.+++.|+++|++++|+++|+||||+|+|++|+.+|++|+|+||
T Consensus 277 ~~~Ls~~~------G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~ 350 (610)
T PRK13803 277 AKRLSDIY------GARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATACALFGLKCTIFMG 350 (610)
T ss_pred HHHHHHhh------CCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHHcCCcEEEEEe
Confidence 99999887 679999999999999999999999999999999989998889999999999999999999999999
Q ss_pred CCCccccHHHHHHHHHcCCEEEEEcC---chhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHH
Q 017391 208 TADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 284 (372)
Q Consensus 208 ~~~~~~~~~k~~~l~~lGA~Vi~v~~---~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Q 284 (372)
+.+++++..|+.+|+.+||+|+.|++ +++++.+++.+++..+..+.+|++++..++|||+.+++.+|+++|.|+.+|
T Consensus 351 ~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q 430 (610)
T PRK13803 351 EEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQ 430 (610)
T ss_pred CCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHH
Confidence 88766667899999999999999983 678888888888866555678888888889999988888999999999999
Q ss_pred HHHHhCCCCCEEEEcCCchhHHHhhhhhhcCCCCcEEEEEecCCCCCCCccccccccCCCceeecCcceeeeeCCCCccc
Q 017391 285 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQIL 364 (372)
Q Consensus 285 l~~~~g~~pd~vvvpvG~GG~laGi~~~~~~~~~vrvigVe~~gs~~~~~~~a~~l~~G~~gv~~g~~~~~l~d~~~~~~ 364 (372)
+.++.+..||+||+|+|+|||++|++.+|+.++.+|||||||.|+++..+.|++++..|.++++||.++|++||++||+.
T Consensus 431 ~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~ 510 (610)
T PRK13803 431 LKEQTGKLPDAIIACVGGGSNAIGIFYHFLDDPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQIL 510 (610)
T ss_pred HHHhhCCCCCEEEEEeCcCHhHHHHHHHHhhCCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCccc
Confidence 97766777999999999999999999999888999999999999998889999999999999999999999999999999
Q ss_pred ccccccCC
Q 017391 365 GTHSVGVG 372 (372)
Q Consensus 365 ~~~si~~~ 372 (372)
++||||+|
T Consensus 511 ~~~sia~g 518 (610)
T PRK13803 511 EPHSISAG 518 (610)
T ss_pred CCceeecc
Confidence 99999976
No 7
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-61 Score=460.19 Aligned_cols=296 Identities=55% Similarity=0.964 Sum_probs=285.4
Q ss_pred CCCcCCCCccccccchhhhHHHHHHHHHhhhCCchHHHHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecC
Q 017391 72 PGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKRED 151 (372)
Q Consensus 72 ~~~~g~~gG~y~Pe~l~~~~~~L~~~~~~~~~~~~f~~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~ 151 (372)
+++||+|||.|+||.|..||.+|+..|.....|.+||+|+.++.+ +++|||||++++||.+.++ .+.+||+|+|+
T Consensus 73 P~r~gkfgg~yvPE~L~h~l~ELek~f~~~~~d~df~ee~~eiy~-y~gRpspL~~AkRLte~~q----~ga~IylKrEd 147 (477)
T KOG1395|consen 73 PPRFGKFGGPYVPEALAHCLPELEKQFYTAERDEDFWEEFLEIYK-YLGRPSPLIRAKRLTEHCQ----TGARIYLKRED 147 (477)
T ss_pred CccccccCCccChHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HcCCCchhHHHHHHHHHhC----CCCEEEEEecC
Confidence 589999999999999999999999999999999999999999887 8999999999999999994 38999999999
Q ss_pred CCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEE
Q 017391 152 LNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV 231 (372)
Q Consensus 152 ~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v 231 (372)
+|||||||.++|..++++|++.|++++|+++++|+||+|+|.+|+++|++|+|+|...+..++.-|+.+||.+||+|+.|
T Consensus 148 lnh~GsHKiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv 227 (477)
T KOG1395|consen 148 LNHTGSHKINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPV 227 (477)
T ss_pred CCccccCCcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeec
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred cC---chhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHh
Q 017391 232 DG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALG 308 (372)
Q Consensus 232 ~~---~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laG 308 (372)
.. ++.|+..++.+.|+.+.+..+|.++++.++|||+.+++.+|.+++.|...|..+..++.||+||.|+|+|+|.+|
T Consensus 228 ~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~G 307 (477)
T KOG1395|consen 228 TSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAG 307 (477)
T ss_pred CCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCcccc
Confidence 75 688889999999999888889999999999999999999999999999999999889999999999999999999
Q ss_pred hhhhhcCCCCcEEEEEecCCCCCCCccccccccCCCceeecCcceeeeeCCCCcccccccccCC
Q 017391 309 LFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG 372 (372)
Q Consensus 309 i~~~~~~~~~vrvigVe~~gs~~~~~~~a~~l~~G~~gv~~g~~~~~l~d~~~~~~~~~si~~~ 372 (372)
++..|..+..+++||||+.|-+++++.|+++|+.|..|++||.++|+|||++|||.|+||||||
T Consensus 308 lf~pF~~dk~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAG 371 (477)
T KOG1395|consen 308 LFSPFIRDKSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAG 371 (477)
T ss_pred ccchhhccchhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccC
Confidence 9999998889999999999999999999999999999999999999999999999999999998
No 8
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=4.5e-56 Score=444.95 Aligned_cols=295 Identities=58% Similarity=0.975 Sum_probs=264.1
Q ss_pred CCcCCCCccccccchhhhHHHHHHHHHhhhCCchHHHHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCC
Q 017391 73 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDL 152 (372)
Q Consensus 73 ~~~g~~gG~y~Pe~l~~~~~~L~~~~~~~~~~~~f~~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~ 152 (372)
|+||+|||.|+||++++++++|+..|...+.|++||+|+++.+..+++++|||+++++|++.+ ++.+||+|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~-----g~~~iy~K~E~~ 75 (385)
T TIGR00263 1 GYFGDFGGQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNYAGRPTPLTFAPNLTEAL-----GGAKIYLKREDL 75 (385)
T ss_pred CCCCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCceehHHHHHHh-----CCCeEEEEeCCC
Confidence 689999999999999999999999999999999999999999999998899999999999887 348999999999
Q ss_pred CcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEc
Q 017391 153 NHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 153 ~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~ 232 (372)
|||||||||+++.++..+++.|++.+|+++||||||.|+|++|+.+|++|+||||+...+..+.|+.+|+.+||+|+.++
T Consensus 76 nptGS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~ 155 (385)
T TIGR00263 76 NHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVT 155 (385)
T ss_pred CCCccchHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEEC
Confidence 99999999999999998888888888888899999999999999999999999998644434468889999999999997
Q ss_pred C---chhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhh
Q 017391 233 G---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGL 309 (372)
Q Consensus 233 ~---~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi 309 (372)
. .++++...+.++++++..+.+|+.++..+++||+.++.+||++++.||++|+.++.+..||+||+|+|+||+++|+
T Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv 235 (385)
T TIGR00263 156 SGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGI 235 (385)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHH
Confidence 4 4777766666666665445678878888889998777789999999999998654444589999999999999999
Q ss_pred hhhhcCCCCcEEEEEecCCCCCCCccccccccCCCceeecCcceeeeeCCCCcccccccccCC
Q 017391 310 FHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG 372 (372)
Q Consensus 310 ~~~~~~~~~vrvigVe~~gs~~~~~~~a~~l~~G~~gv~~g~~~~~l~d~~~~~~~~~si~~~ 372 (372)
+.++...+.+|||||||+++...+..+++++..|..++.+|..++.++|+++++.+.+||+.|
T Consensus 236 ~~~~~~~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~g 298 (385)
T TIGR00263 236 FYAFIDDPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAG 298 (385)
T ss_pred HHHHhhCCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeecc
Confidence 998877799999999999998888888999999999999999999999999999999999875
No 9
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=2e-43 Score=351.58 Aligned_cols=261 Identities=59% Similarity=0.960 Sum_probs=215.8
Q ss_pred hHHHHHHHHHhhhCCchHHHHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHH
Q 017391 90 CLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMI 169 (372)
Q Consensus 90 ~~~~L~~~~~~~~~~~~f~~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~ 169 (372)
.|++|+.+|-+..-|+.|.+.++.++.++++++|||+++++|++.+ ++.+||+|+|++|||||||||+++.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~l~~l~~~~-----g~~~l~~K~E~~nptgS~K~R~a~~~~~~ 76 (365)
T cd06446 2 ALEELEQEFSKERYDPDFPEELRELYKDYVGRPTPLYRAKRLSEYL-----GGAKIYLKREDLNHTGAHKINNALGQALL 76 (365)
T ss_pred hHHHHHHHHHHhhcCcccHHHHHHHhhccCCCCCCceehHHHHHhh-----CCceEEEEeccCCCccchhHHHHHHHHHH
Confidence 4778999999888899999999999999988899999999999877 46799999999999999999999999988
Q ss_pred HHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC---chhHHHHHHHHHH
Q 017391 170 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRNW 246 (372)
Q Consensus 170 a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~---~~~da~~~a~~~~ 246 (372)
+.+.|++.+|+++||||||+|+|++|+.+|++|+||||+......+.|+.+|+.+||+|+.++. +++++...+.+.+
T Consensus 77 a~~~g~~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~ 156 (365)
T cd06446 77 AKRMGKKRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDW 156 (365)
T ss_pred HHHcCCCeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 8899988888877899999999999999999999999987543344688899999999999985 3567665565555
Q ss_pred HhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcCCCCcEEEEEec
Q 017391 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEA 326 (372)
Q Consensus 247 ~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~~~~vrvigVe~ 326 (372)
.++..+.+|.++++.+++|++..+.+||.++++||++|+.+..+..||+||+|+|+||+++|++.+++..+.+|||||||
T Consensus 157 ~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~~~~~~vigVep 236 (365)
T cd06446 157 VTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFINDKDVKLIGVEA 236 (365)
T ss_pred HhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHhCCCceEEEEcC
Confidence 55432446666776666788767788999999999999865333468999999999999999999887667999999999
Q ss_pred CCCCCCCccccccccCCCceeecCcceee
Q 017391 327 AGFGLDSGKHAATLAKGEVGVYHGAMSYL 355 (372)
Q Consensus 327 ~gs~~~~~~~a~~l~~G~~gv~~g~~~~~ 355 (372)
.+++.....+..++..|....++|...|.
T Consensus 237 ~gs~~~~~~~~~~~~~g~~~~~~~~~~~~ 265 (365)
T cd06446 237 GGCGLETGGHAAYLFGGTAGVLHGLKMYT 265 (365)
T ss_pred CCCccccccceeeccCCCcceecchhhhc
Confidence 99877655555666666665555444333
No 10
>PRK09225 threonine synthase; Validated
Probab=100.00 E-value=3e-43 Score=357.90 Aligned_cols=253 Identities=17% Similarity=0.090 Sum_probs=200.7
Q ss_pred eEEeecCCCCCCcCcccccccCCCCCCCccCCCCCCCcCCCCccccccchhh------------hHHHHHHHHHhhh-CC
Q 017391 38 LQKYSTSSPIMRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLIT------------CLSLLEAEFNFVL-QD 104 (372)
Q Consensus 38 ~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~g~~gG~y~Pe~l~~------------~~~~L~~~~~~~~-~~ 104 (372)
|+|+|||++.+.+||+||++ +|+++| ||||||+.+|. ++.+|.......+ .+
T Consensus 1 M~y~STR~~~~~~sf~eail-------~Gla~D--------GGLyvP~~~P~l~~~~~~~~~~~sy~~~a~~il~~f~~~ 65 (462)
T PRK09225 1 MKYISTRGNAPQVSFSEAVL-------QGLAPD--------GGLYVPEELPKLSAEEIDALLGLSYAELAFEILSAFVGD 65 (462)
T ss_pred CeeEeCCCCCCCCCHHHHHh-------cCCCCC--------CceEeCcccCCCCHHHHHHHhCCCHHHHHHHHHHHhccC
Confidence 99999999999999999999 999999 99999999974 2233333333333 33
Q ss_pred chHHHHHHHHhhcccC-C----CCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHH---HHHHHHHcCCC
Q 017391 105 TKFQEELSTALRDYVG-R----ETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIG---QAMIAKRMGRK 176 (372)
Q Consensus 105 ~~f~~~l~~~i~~~v~-~----~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~---~~~~a~~~g~~ 176 (372)
+--.++|++++.+... | .+||+++ +.++|+++++||||||||||++.. .+..+.+ ++.
T Consensus 66 ~i~~~~l~~~i~~ay~~F~~~~~~pl~~l-------------~~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~ 131 (462)
T PRK09225 66 DIPEDDLKAIIARAYTTFDHPAIAPLVQL-------------DDNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEK 131 (462)
T ss_pred CCCHHHHHHHHHHHHhcCCCcCccceEEe-------------CCCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCC
Confidence 3334688888887654 5 3899887 347999999999999999999854 3445555 545
Q ss_pred eEEEecCcchHHHHH-HHHHHHcCCcEEEEEcCCCccccHHHHHHHHHc-CCEE--EEEcCchhHHHHHHHHHHHhccCC
Q 017391 177 SIVAATGAGQHGVAT-AAACAKLALDCTVFMGTADMEKQSSKVLLMKLL-GAQV--KAVDGCFKEASSEAIRNWVGNLEK 252 (372)
Q Consensus 177 ~~V~~aSsGN~G~Av-A~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~l-GA~V--i~v~~~~~da~~~a~~~~~~~~~~ 252 (372)
..|+++||||+|.|+ |.++++.|++|+|++|++.++ ..+..||+++ |+|| +.|+|+||||+..+++.+.++...
T Consensus 132 ~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs--~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~ 209 (462)
T PRK09225 132 ITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVS--PVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELK 209 (462)
T ss_pred cEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCC--HHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhh
Confidence 566668999999999 566788999999999998664 4566699999 9987 899999999999998877664433
Q ss_pred cEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcCC-CCcEEEEEe
Q 017391 253 SYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIND-EDVRLIGVE 325 (372)
Q Consensus 253 ~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~~-~~vrvigVe 325 (372)
..+.+.++|++||+|.+ ||.++|+|+++|+.... ..||.|+||+|||||+.|++.+.+++ |-.|+|+++
T Consensus 210 ~~~~l~saNSiN~~Ri~---gQ~~yyfea~~ql~~~~-~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~ 279 (462)
T PRK09225 210 EKLKLSSANSINIGRLL---AQIVYYFYAYLQLGIEA-GEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT 279 (462)
T ss_pred hcCceEEEeccCHHHHH---HHHHHHHHHHHHhcccc-CCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe
Confidence 33445677888999854 99999999999985322 34899999999999999999887655 445999997
No 11
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=100.00 E-value=1.9e-41 Score=344.91 Aligned_cols=257 Identities=18% Similarity=0.091 Sum_probs=198.5
Q ss_pred EEeecCCCCCCcCcccccccCCCCCCCccCCCCCCCcCCCCccccccchhh------------hHHHHHHHHHhhhC-Cc
Q 017391 39 QKYSTSSPIMRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLIT------------CLSLLEAEFNFVLQ-DT 105 (372)
Q Consensus 39 ~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~g~~gG~y~Pe~l~~------------~~~~L~~~~~~~~~-~~ 105 (372)
+|+|||++.+.+||+||++ +|+++| ||||||+.+|. ++.+|.......+- ++
T Consensus 1 ~y~STR~~~~~~~f~~ail-------~Gla~D--------GGLyvP~~~P~~~~~~~~~~~~~sy~~~a~~vl~~f~~~~ 65 (460)
T cd01560 1 KYVSTRGGNPGVSFSEALL-------SGLAPD--------GGLYVPEELPKLSAEEIASWSGLSYQELAFEVLSLFIGDE 65 (460)
T ss_pred CceeCCCCCCCCCHHHHHh-------cCCCCC--------CceecCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 6999999999999999999 999999 99999999973 22233333333332 33
Q ss_pred hHHHHHHHHhhcccC-CC----CCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHH---HHHHHHc-CCC
Q 017391 106 KFQEELSTALRDYVG-RE----TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQ---AMIAKRM-GRK 176 (372)
Q Consensus 106 ~f~~~l~~~i~~~v~-~~----TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~---~~~a~~~-g~~ 176 (372)
-..++|++++.+... |+ +||.++ +.++|+++++|+||||||||++... +..+.+. +..
T Consensus 66 i~~~~L~~~i~~ay~~F~~~~~~pl~~l-------------~~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~ 132 (460)
T cd01560 66 IPEDDLKSLIDRAYSFFRHPDIAPLVQL-------------GDNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNER 132 (460)
T ss_pred CCHHHHHHHHHHHHhcCCCCCccceEEe-------------CCCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCC
Confidence 345688888887654 43 888887 4478999999999999999998543 3334333 234
Q ss_pred eEEEecCcchHHHHH-HHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCC---EEEEEcCchhHHHHHHHHHHHhccCC
Q 017391 177 SIVAATGAGQHGVAT-AAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGA---QVKAVDGCFKEASSEAIRNWVGNLEK 252 (372)
Q Consensus 177 ~~V~~aSsGN~G~Av-A~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA---~Vi~v~~~~~da~~~a~~~~~~~~~~ 252 (372)
..|+++||||+|.|+ +..+++.|++|+|++|++.++ ..+..||+++|+ +|+.|+|+||||+..+++.+.++...
T Consensus 133 ~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs--~~Q~~Qm~t~g~~Nv~vi~V~G~fDd~q~~vk~~~~d~~~~ 210 (460)
T cd01560 133 ITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVS--PIQELQMTTLPADNVHVVAVEGDFDDCQSLVKALFADEDFN 210 (460)
T ss_pred eEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCC--HHHHHHHHhhCCCceEEEEEcCCHHHHHHHHHHHhcChhhH
Confidence 455557899999996 666888999999999998664 456669999996 78999999999999998877664333
Q ss_pred cEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcCC-CCcEEEEEecCC
Q 017391 253 SYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIND-EDVRLIGVEAAG 328 (372)
Q Consensus 253 ~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~~-~~vrvigVe~~g 328 (372)
..+.+.++|++|++|.+ +|.++|+|++.|+..+..+.|+.|+||+||||++.|++.+.+++ |-.|+|+++..+
T Consensus 211 ~~~~l~saNSiN~~Ri~---~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n 284 (460)
T cd01560 211 KKLKLSSANSINWARIL---AQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN 284 (460)
T ss_pred hcceEEEEeccCHHHHH---HHHHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC
Confidence 34456778889999854 99999999999985321125899999999999999999998755 555898865443
No 12
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-41 Score=328.59 Aligned_cols=224 Identities=27% Similarity=0.332 Sum_probs=186.9
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHc-CCCeEEEecCcchHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRM-GRKSIVAATGAGQHG 188 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~-g~~~~V~~aSsGN~G 188 (372)
+.++++++.+ .+|||++++.|++.+ +.+||+|+|++||+||||.|||++.+..+.++ .+...|+++|+||||
T Consensus 14 ~A~~ri~~~~-~~TPL~~s~~Ls~~~------g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~gViaaSaGNHa 86 (347)
T COG1171 14 AAAARLKGVV-NPTPLQRSPSLSERL------GAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVIAASAGNHA 86 (347)
T ss_pred HHHHHHhCcc-cCCCcccchhhHHhh------CceEEEeeccCcccccchhhhHHHHHHhcChhhhhcCceEEecCCcHH
Confidence 3456777777 489999999999997 88999999999999999999999998765433 344556668999999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChh-
Q 017391 189 VATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCP- 267 (372)
Q Consensus 189 ~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~- 267 (372)
+++|++|+++|++++||||.++ ++.|++.++.|||+|+.++.+|||+.+.+.+ ++++ .+..|+ +||+
T Consensus 87 QGvA~aa~~lGi~a~IvMP~~t---p~~Kv~a~r~~GaeVil~g~~~dda~~~a~~-~a~~-~G~~~i-------~pfD~ 154 (347)
T COG1171 87 QGVAYAAKRLGIKATIVMPETT---PKIKVDATRGYGAEVILHGDNFDDAYAAAEE-LAEE-EGLTFV-------PPFDD 154 (347)
T ss_pred HHHHHHHHHhCCCEEEEecCCC---cHHHHHHHHhcCCEEEEECCCHHHHHHHHHH-HHHH-cCCEEe-------CCCCC
Confidence 9999999999999999999998 6899999999999999999999999988865 4444 355665 7773
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCC-----------Ccc
Q 017391 268 IMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLD-----------SGK 335 (372)
Q Consensus 268 ~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~-----------~~~ 335 (372)
..+++||+|++.|+++|+.+ .||+|+||+|+||+++|++.+++ ..|.+|||||||++++.. ...
T Consensus 155 p~viAGQGTi~lEileq~~~----~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~ 230 (347)
T COG1171 155 PDVIAGQGTIALEILEQLPD----LPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLP 230 (347)
T ss_pred cceeecccHHHHHHHHhccc----cCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecC
Confidence 34678999999999999864 27999999999999999999998 789999999999998641 122
Q ss_pred ccccccCCCceeecCcceeee
Q 017391 336 HAATLAKGEVGVYHGAMSYLL 356 (372)
Q Consensus 336 ~a~~l~~G~~gv~~g~~~~~l 356 (372)
...+++.|...-.+|..+|-+
T Consensus 231 ~~~tiaDG~av~~~g~~tf~i 251 (347)
T COG1171 231 DVGTIADGLAVKRPGDLTFEI 251 (347)
T ss_pred CCCccccccccCCCCHHHHHH
Confidence 356777777777778888755
No 13
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=1.6e-39 Score=327.02 Aligned_cols=198 Identities=26% Similarity=0.347 Sum_probs=167.9
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
+.++.+.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|+|.+.+..+.+.++.+.|+++|+||||.
T Consensus 9 ~a~~~i~~~i-~~TPl~~~~~Ls~~~------g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNhg~ 81 (403)
T PRK08526 9 QAKQRISGFV-NKTPFAYAPFLSKIS------GAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGVIAASAGNHAQ 81 (403)
T ss_pred HHHHHHhCcC-CCCCccchHHHHHHh------CCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECccHHHH
Confidence 3456677778 499999999999887 679999999999999999999999987666544444455689999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChh-H
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCP-I 268 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~-~ 268 (372)
++|++|+.+|++|+||||++. ++.|+.+++.|||+|+.++++++++...+.+ ++++ .+.+|+ |||. .
T Consensus 82 avA~aa~~~Gi~~~IvmP~~~---p~~k~~~~r~~GA~Vv~~g~~~~~a~~~a~~-~a~~-~g~~~v-------~p~~~~ 149 (403)
T PRK08526 82 GVAISAKKFGIKAVIVMPEAT---PLLKVSGTKALGAEVILKGDNYDEAYAFALE-YAKE-NNLTFI-------HPFEDE 149 (403)
T ss_pred HHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHhCCCEEEEECCCHHHHHHHHHH-HHHh-cCCEee-------CCCCCH
Confidence 999999999999999999987 6789999999999999999999999988865 4444 244553 4441 2
Q ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 269 MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 269 lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
.+++||++++.|+++|+. .+|+||+|+|+||+++|++.+++ .+|.+|||||||++++.
T Consensus 150 ~~i~G~gtia~EI~eq~~-----~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~ 208 (403)
T PRK08526 150 EVMAGQGTIALEMLDEIS-----DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPA 208 (403)
T ss_pred HHHhhhHHHHHHHHHhcC-----CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCCh
Confidence 346799999999999973 48999999999999999999998 68999999999999974
No 14
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=6.9e-39 Score=330.28 Aligned_cols=199 Identities=26% Similarity=0.311 Sum_probs=167.6
Q ss_pred HHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHH-cCCCeEEEecCcchH
Q 017391 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKR-MGRKSIVAATGAGQH 187 (372)
Q Consensus 109 ~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~-~g~~~~V~~aSsGN~ 187 (372)
..|...+.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|+|.+.+..+.+ ..++. |+++|+|||
T Consensus 25 ~~~~~~i~~~v-~~TPL~~~~~Ls~~~------g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~G-VV~aSaGNh 96 (521)
T PRK12483 25 KILAARVYDVA-RETPLQRAPNLSARL------GNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARG-VITASAGNH 96 (521)
T ss_pred HHHHHHHhhhc-CCCCeeEchhhhHhh------CCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCc-EEEECCCHH
Confidence 45667777877 489999999999987 6899999999999999999999998875543 33344 556789999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCCh-
Q 017391 188 GVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPC- 266 (372)
Q Consensus 188 G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~- 266 (372)
|.++|++|+.+|++|+||||++. ++.|+.+++.+||+|+.++++++++...+.+. +++ .+.+|+ |||
T Consensus 97 a~gvA~aA~~lGi~~~IvmP~~t---p~~Kv~~~r~~GAeVil~g~~~d~a~~~A~~l-a~e-~g~~~v-------~pfd 164 (521)
T PRK12483 97 AQGVALAAARLGVKAVIVMPRTT---PQLKVDGVRAHGGEVVLHGESFPDALAHALKL-AEE-EGLTFV-------PPFD 164 (521)
T ss_pred HHHHHHHHHHhCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH-HHh-cCCeee-------CCCC
Confidence 99999999999999999999988 67899999999999999999999999888654 443 244554 444
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 267 PIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 267 ~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
+..+++||+|++.||++|+. ..+|+||+|+|+||+++|++.+++ .+|++|||||||++++.
T Consensus 165 d~~viaGqgTig~EI~eQ~~----~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~ 226 (521)
T PRK12483 165 DPDVIAGQGTVAMEILRQHP----GPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNC 226 (521)
T ss_pred ChHHHHHHHHHHHHHHHHhC----CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCch
Confidence 12346799999999999974 248999999999999999999998 68999999999999864
No 15
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=4.9e-39 Score=324.26 Aligned_cols=199 Identities=23% Similarity=0.275 Sum_probs=167.1
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
..++++++.++ +|||+++++|++.+ |.+||+|+|++|||||||+|+|++++..+.+.+....|+++|+||||.
T Consensus 14 ~a~~~~~~~i~-~TPl~~~~~ls~~~------g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~~~gvv~aSsGN~g~ 86 (406)
T PRK06382 14 YAKSYLEGYLN-RTPLIHSTTFGDEY------GGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNGVITASAGNHAQ 86 (406)
T ss_pred HHHHHHhCcCC-CCCeeEhhhhHHHh------CCEEEEEecCCCCCCCCHHHHHHHHHHhcchhccCCeEEEECCCHHHH
Confidence 45677788885 89999999999887 679999999999999999999999987666555433455688999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHH
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIM 269 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~l 269 (372)
|+|++|+.+|++|+||||+.. ++.|+.+++.+||+|+.++++++++.+.+.+ ++++ .+.+|+ .+++ |+ .
T Consensus 87 a~A~aa~~~G~~~~ivmp~~~---~~~k~~~~~~~GA~Vv~~~~~~~~a~~~a~~-la~~-~~~~~v-~~~~--~~---~ 155 (406)
T PRK06382 87 GVAYAASINGIDAKIVMPEYT---IPQKVNAVEAYGAHVILTGRDYDEAHRYADK-IAMD-ENRTFI-EAFN--DR---W 155 (406)
T ss_pred HHHHHHHHcCCCEEEEEcCCC---HHHHHHHHHHcCCEEEEECCCHHHHHHHHHH-HHHh-cCCEec-CccC--Ch---H
Confidence 999999999999999999987 5788999999999999999999999877754 4443 244443 3332 22 2
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 270 VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 270 v~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
+++||+++++|+++|+. .||+||+|+|+||+++|++.+++ .+|.+|||||||++++.
T Consensus 156 ~i~g~~t~~~Ei~eq~~-----~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~ 213 (406)
T PRK06382 156 VISGQGTIGLEIMEDLP-----DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDS 213 (406)
T ss_pred HHHHHHHHHHHHHHhcC-----CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChH
Confidence 45699999999999863 48999999999999999999998 68999999999999864
No 16
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=3.3e-39 Score=325.29 Aligned_cols=199 Identities=28% Similarity=0.344 Sum_probs=167.2
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
..++.+.+.++ +|||+++++|++.+ +.+||+|+|++|||||||||+|.+++..+.+.+....|+++|+||||.
T Consensus 11 ~a~~~i~~~i~-~TPl~~~~~ls~~~------g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~ 83 (404)
T PRK08198 11 EARERLKGVVR-RTPLEYSRTLSELT------GAEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQ 83 (404)
T ss_pred HHHHHHhccCC-CCCceehhhHHHHh------CCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECCCHHHH
Confidence 34566677774 89999999999887 679999999999999999999999988766444444555678999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHH
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIM 269 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~l 269 (372)
|+|++|+.+|++|+||||++. ++.|+++|+.+||+|+.++++++++.+.+.+ ++++ .+.+| +.+++ |++
T Consensus 84 alA~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~-~~~~-~g~~~-~~~~~--~~~--- 152 (404)
T PRK08198 84 GVAYAASLLGIKATIVMPETA---PLSKVKATRSYGAEVVLHGDVYDEALAKAQE-LAEE-TGATF-VHPFD--DPD--- 152 (404)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECCCHHHHHHHHHH-HHHh-cCCEe-cCCCC--Ccc---
Confidence 999999999999999999987 6789999999999999999999999887755 4444 24444 44443 233
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 270 VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 270 v~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
..+||++++.||++|+. .+|+||+|+|+||+++|++.+++ .+|++|||||||++++.
T Consensus 153 ~~~g~~t~a~EI~~q~~-----~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~ 210 (404)
T PRK08198 153 VIAGQGTIGLEILEDLP-----DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPA 210 (404)
T ss_pred HHHHHHHHHHHHHHhCC-----CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChH
Confidence 24699999999999873 38999999999999999999998 68999999999999864
No 17
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.4e-38 Score=311.84 Aligned_cols=236 Identities=21% Similarity=0.281 Sum_probs=181.1
Q ss_pred hhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC----CeEEEecCcchHHHH
Q 017391 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR----KSIVAATGAGQHGVA 190 (372)
Q Consensus 115 i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~----~~~V~~aSsGN~G~A 190 (372)
+.+.++ +|||+++++++..+ +.+||+|+|++|||||||||+|++++..+.+.|. ...|+++||||||.|
T Consensus 9 ~~~~ig-~TPLv~l~~l~~~~------~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~a 81 (322)
T PLN02565 9 VTELIG-KTPLVYLNNVVDGC------VARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIG 81 (322)
T ss_pred HHHHhC-CCceEEccccCCCC------CceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHH
Confidence 344564 89999998876533 4699999999999999999999999988887775 134667899999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC--chhHHHHHHHHHHHhccCCcEEEeccccCCCChhH
Q 017391 191 TAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPI 268 (372)
Q Consensus 191 vA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~--~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 268 (372)
+|++|+.+|++|+||||++. ++.|+.+|+.+||+|+.++. +++++.+.+.+ ++++.++ .|+++++++ +.+.
T Consensus 82 lA~~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~-l~~~~~~-~~~~~q~~n--~~n~ 154 (322)
T PLN02565 82 LAFMAAAKGYKLIITMPASM---SLERRIILLAFGAELVLTDPAKGMKGAVQKAEE-ILAKTPN-SYILQQFEN--PANP 154 (322)
T ss_pred HHHHHHHcCCeEEEEeCCCC---cHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHH-HHHhCCC-cEeecccCC--HhHH
Confidence 99999999999999999987 68999999999999999986 45777766644 4443223 456666653 3222
Q ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCCC-ccccccccCCC-c
Q 017391 269 MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLDS-GKHAATLAKGE-V 345 (372)
Q Consensus 269 lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~~-~~~a~~l~~G~-~ 345 (372)
. .+|.+++.||++|+ +..||+||+|+|+||+++|++.+++ .++.+|||+|||++|+... +........|. .
T Consensus 155 ~--~~~~t~a~Ei~~q~----~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~ 228 (322)
T PLN02565 155 K--IHYETTGPEIWKGT----GGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGA 228 (322)
T ss_pred H--HHHHHHHHHHHHhc----CCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCC
Confidence 2 37999999998875 3358999999999999999999998 6889999999999996542 22222333454 2
Q ss_pred eeecCcceeeeeCCCCccccccccc
Q 017391 346 GVYHGAMSYLLQDEEGQILGTHSVG 370 (372)
Q Consensus 346 gv~~g~~~~~l~d~~~~~~~~~si~ 370 (372)
+..++..++-+.|+.-++.|..+++
T Consensus 229 ~~~~~~~~~~~vd~~v~V~d~ea~~ 253 (322)
T PLN02565 229 GFIPGVLDVDLLDEVVQVSSDEAIE 253 (322)
T ss_pred CCCCCcCCHhHCCEEEEECHHHHHH
Confidence 2445666666677766666665554
No 18
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=6.9e-39 Score=315.27 Aligned_cols=237 Identities=24% Similarity=0.272 Sum_probs=182.1
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
..++.+.+.++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.+..+...|+++|+||||.
T Consensus 16 ~a~~~i~~~i~-~TPlv~~~~l~~~~------g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~vv~~SsGN~g~ 88 (333)
T PRK08638 16 EAKQRLAGRIR-KTPLPRSNYLSERC------KGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQ 88 (333)
T ss_pred HHHHHhhCcCc-CCCceechhhHHhh------CCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcCCeEEEeCCcHHHH
Confidence 45667777884 89999999999876 679999999999999999999999987655433334456688999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHH
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIM 269 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~l 269 (372)
|+|++|+.+|++|+||||++. ++.|+.+|+.+||+|+.++++++++.+.+.+ ++++. +. |.+++++ ||+.
T Consensus 89 alA~~aa~~G~~~~iv~p~~~---~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~-~a~~~-g~-~~~~~~~--~~~~-- 158 (333)
T PRK08638 89 GVALSCALLGIDGKVVMPKGA---PKSKVAATCGYGAEVVLHGDNFNDTIAKVEE-IVEEE-GR-TFIPPYD--DPKV-- 158 (333)
T ss_pred HHHHHHHHcCCCEEEEeCCCC---cHHHHHHHHHcCCEEEEECcCHHHHHHHHHH-HHHhc-CC-EEcCcCC--Ccch--
Confidence 999999999999999999987 5789999999999999999999999877654 44442 44 4445543 3443
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC-----CCcc-----ccc
Q 017391 270 VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL-----DSGK-----HAA 338 (372)
Q Consensus 270 v~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~-----~~~~-----~a~ 338 (372)
++||.+++.||++|+. .+|+||+|+|+||+++|++.+++ .++.+|||||||++++. ..+. ...
T Consensus 159 -~~g~~t~a~Ei~~q~~-----~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ 232 (333)
T PRK08638 159 -IAGQGTIGLEILEDLW-----DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTG 232 (333)
T ss_pred -hccccHHHHHHHhhcC-----CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCC
Confidence 4599999999999873 37999999999999999999998 58899999999999842 1111 122
Q ss_pred cccCCCceeecCccee----eeeCCCCcccccccc
Q 017391 339 TLAKGEVGVYHGAMSY----LLQDEEGQILGTHSV 369 (372)
Q Consensus 339 ~l~~G~~gv~~g~~~~----~l~d~~~~~~~~~si 369 (372)
++..|.....++...+ -+.|+.-++.|...+
T Consensus 233 ti~~gl~~~~p~~~~~~~~~~~~d~~v~Vsd~ea~ 267 (333)
T PRK08638 233 TLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIR 267 (333)
T ss_pred CeeccccCCCccHHHHHHHHHhCCeEEEECHHHHH
Confidence 4455543344555443 345555555554443
No 19
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-39 Score=320.29 Aligned_cols=255 Identities=24% Similarity=0.288 Sum_probs=201.2
Q ss_pred eEEeecCCCCCCcCcccccccCCCCCCCccCCCCCCCcCCCCccccccchhhh-HHHHHHH-----------HHhhhCCc
Q 017391 38 LQKYSTSSPIMRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITC-LSLLEAE-----------FNFVLQDT 105 (372)
Q Consensus 38 ~~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~g~~gG~y~Pe~l~~~-~~~L~~~-----------~~~~~~~~ 105 (372)
|+|+|||......+|.++++ .++.+| ||+|+|+.++.. +..++.. |.+.+...
T Consensus 1 m~~~~~rc~~cg~~f~~a~~-------~~~c~~--------cGl~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 65 (411)
T COG0498 1 MKYVSLRCLKCGREFSQALL-------QGLCPD--------CGLFLPAEYPYFSLEEIDKLLGLSYPELAWRYLELLPVG 65 (411)
T ss_pred CceeEeecCCCCcchhhHHh-------hCcCCc--------CCcccccccCccchhhhhhhhcccccchHHHHHHHCCCC
Confidence 89999999999999999999 999999 999999988642 1122222 12222110
Q ss_pred -hHHHHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCc
Q 017391 106 -KFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGA 184 (372)
Q Consensus 106 -~f~~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSs 184 (372)
.....|. ...||+++.+++...++. .+.++|+|+|+||||||||||++...+..+.+.|. ..|+.+||
T Consensus 66 ~~~~~~l~-------eg~tp~~~~~~~~~~l~~---~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-~~I~~ASS 134 (411)
T COG0498 66 EIPAVSLG-------EGGTPLYKAPALAAPLGV---LNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-KTILCASS 134 (411)
T ss_pred Ccchhhhh-------hccCccccCcccchhhcc---CCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-CEEEEeCC
Confidence 1111111 135999999888887731 13469999999999999999999888888888886 44445789
Q ss_pred chHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCC
Q 017391 185 GQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPH 264 (372)
Q Consensus 185 GN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~ 264 (372)
||||.|+|+++++.|++|+|++|++.+ ...|+.||.++||+|+.++|+||||++.+++.+. + ..+ +...|++|
T Consensus 135 GnTgAs~aaya~rag~~v~Vl~P~g~v--s~~k~~q~~~~ga~~i~v~G~fDda~~~vk~~~~-~--~~~--~~~~nsiN 207 (411)
T COG0498 135 GNTGASAAAYAARAGLKVFVLYPKGKV--SPGKLAQMLTLGAHVIAVDGNFDDAQELVKEAAN-R--EGL--LSAVNSIN 207 (411)
T ss_pred chHHHHHHHHhccCCCeEEEEecCCCC--CHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHh-h--CCc--eeeccccC
Confidence 999999999999999999999999977 4578889999999999999999999999976554 2 222 34567889
Q ss_pred ChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC-------CCCcEEEEEecCCCCC
Q 017391 265 PCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-------DEDVRLIGVEAAGFGL 331 (372)
Q Consensus 265 p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~-------~~~vrvigVe~~gs~~ 331 (372)
|+|. +||.|+++|+++|+-. +.||+|+||+|||||+.|++.+|++ ...+++.+||++++..
T Consensus 208 p~rl---egq~t~~fe~~~ql~~---~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p 275 (411)
T COG0498 208 PYRL---EGQKTYAFEIAEQLGW---KAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSP 275 (411)
T ss_pred HHHh---hhhhhhHhHHHHHhCC---CCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccc
Confidence 9984 4999999999999742 5699999999999999999999984 2356889999999754
No 20
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-38 Score=301.82 Aligned_cols=237 Identities=24% Similarity=0.299 Sum_probs=200.1
Q ss_pred hhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC---CeEEEecCcchHHHHH
Q 017391 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR---KSIVAATGAGQHGVAT 191 (372)
Q Consensus 115 i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~---~~~V~~aSsGN~G~Av 191 (372)
+.+.++ +|||+++.+++... +++||+|+|+.||+||.|||-|++++..|+++|. ..+|+++||||||+++
T Consensus 5 ~~~~iG-~TPlvrL~~~~~~~------~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~L 77 (300)
T COG0031 5 ILDLIG-NTPLVRLNRLSPGT------GVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIAL 77 (300)
T ss_pred hHHHhC-CCCcEeecccCCCC------CceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHH
Confidence 345665 89999999988753 6899999999999999999999999999999885 5688899999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC--c-hhHHHHHHHHHHHhccCCcEEEeccccCCCChhH
Q 017391 192 AAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--C-FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPI 268 (372)
Q Consensus 192 A~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~--~-~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 268 (372)
|++|+.+|++++++||+.. +++|+++|++|||+|+.++. . +..+.+.+. +++++.++..+.++|+.|+.+.
T Consensus 78 A~vaa~~Gy~~iivmP~~~---S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~-el~~~~p~~~~~~~Qf~NpaN~-- 151 (300)
T COG0031 78 AMVAAAKGYRLIIVMPETM---SQERRKLLRALGAEVILTPGAPGNMKGAIERAK-ELAAEIPGYAVWLNQFENPANP-- 151 (300)
T ss_pred HHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHH-HHHHhCCCceEchhhcCCCccH--
Confidence 9999999999999999987 78999999999999999986 3 556666664 3555545557777898754433
Q ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCCCccccccccCCC-ce
Q 017391 269 MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLDSGKHAATLAKGE-VG 346 (372)
Q Consensus 269 lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~~~~~a~~l~~G~-~g 346 (372)
. .++.+++.||++|+ ++.+|+||+.+|+||+++|++.++| ..|.+||++|||++|++.+.-..++...|. .+
T Consensus 152 ~--aH~~tT~~EI~~~~----~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~ 225 (300)
T COG0031 152 E--AHYETTGPEIWQQT----DGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAG 225 (300)
T ss_pred H--HHHhhhHHHHHHHh----CCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCC
Confidence 2 48889999998885 3459999999999999999999999 688999999999999987632267777886 67
Q ss_pred eecCcceeeeeCCCCccccccccc
Q 017391 347 VYHGAMSYLLQDEEGQILGTHSVG 370 (372)
Q Consensus 347 v~~g~~~~~l~d~~~~~~~~~si~ 370 (372)
.++......+.|+.-+|.|..+++
T Consensus 226 ~ip~~~~~~~iD~v~~V~d~~A~~ 249 (300)
T COG0031 226 FVPENLDLDLIDEVIRVSDEEAIA 249 (300)
T ss_pred cCCcccccccCceEEEECHHHHHH
Confidence 788888888899999999887764
No 21
>PLN02970 serine racemase
Probab=100.00 E-value=3.5e-38 Score=309.82 Aligned_cols=198 Identities=17% Similarity=0.158 Sum_probs=165.2
Q ss_pred HHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHH
Q 017391 111 LSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVA 190 (372)
Q Consensus 111 l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~A 190 (372)
.+..+.+.++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.+++....|+++|+||||.|
T Consensus 17 a~~~i~~~i~-~TPL~~~~~l~~~~------g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~aSsGN~g~a 89 (328)
T PLN02970 17 ARKRIAPFIH-RTPVLTSSSLDALA------GRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTHSSGNHAAA 89 (328)
T ss_pred HHHHHhCcCC-CCCeeechhhHHhh------CCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEEECCcHHHHH
Confidence 3455667785 89999999999886 6799999999999999999999999887764444444556789999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHH
Q 017391 191 TAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMV 270 (372)
Q Consensus 191 vA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv 270 (372)
+|++|+.+|++|+||||++. +++|+.+|+.+||+|+.++++++++.+.+.+ ++++ .+.+| ++++++ +. .
T Consensus 90 lA~~a~~~G~~~~ivvp~~~---~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~-la~~-~g~~~-~~~~~n--~~---~ 158 (328)
T PLN02970 90 LALAAKLRGIPAYIVVPKNA---PACKVDAVIRYGGIITWCEPTVESREAVAAR-VQQE-TGAVL-IHPYND--GR---V 158 (328)
T ss_pred HHHHHHHcCCCEEEEECCCC---CHHHHHHHHhcCCEEEEeCCCHHHHHHHHHH-HHHh-cCCEE-eCCCCC--cc---h
Confidence 99999999999999999987 6789999999999999999999988776644 4443 34444 455543 32 2
Q ss_pred HhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 271 REFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 271 ~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
++||+++++||++|+. .||+||+|+|+||+++|++.+++ .++.+|||+|||.+++.
T Consensus 159 ~~g~~t~g~Ei~~ql~-----~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~ 215 (328)
T PLN02970 159 ISGQGTIALEFLEQVP-----ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADD 215 (328)
T ss_pred hhehHHHHHHHHHhcc-----CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcH
Confidence 4589999999999973 38999999999999999999998 68999999999999853
No 22
>PLN03013 cysteine synthase
Probab=100.00 E-value=3.5e-38 Score=316.85 Aligned_cols=238 Identities=19% Similarity=0.250 Sum_probs=183.6
Q ss_pred HHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC---C-eEEEecCcchHH
Q 017391 113 TALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR---K-SIVAATGAGQHG 188 (372)
Q Consensus 113 ~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~---~-~~V~~aSsGN~G 188 (372)
..+.+.++ +|||++++.+++.. +.+||+|+|++|||||||||+|.+++..+++.|. . ..|+++||||||
T Consensus 115 ~~i~~~iG-~TPLv~l~~l~~~~------g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G 187 (429)
T PLN03013 115 DNVSQLIG-KTPMVYLNSIAKGC------VANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTG 187 (429)
T ss_pred HHHHhcCC-CCCeEECccccccc------CCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHH
Confidence 45566775 89999999988764 6799999999999999999999999998888875 1 456778999999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc--hhHHHHHHHHHHHhccCCcEEEeccccCCCCh
Q 017391 189 VATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPC 266 (372)
Q Consensus 189 ~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~--~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 266 (372)
.|+|++|+.+|++|+||||+.. +++|+++|+.+||+|+.+++. ++++.+.+.+ ++++..+ +|.++++. ||+
T Consensus 188 ~ALA~~a~~~G~~~~VvvP~~~---s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~e-la~~~~g-~~~~~qy~--Np~ 260 (429)
T PLN03013 188 IGLAFIAASRGYRLILTMPASM---SMERRVLLKAFGAELVLTDPAKGMTGAVQKAEE-ILKNTPD-AYMLQQFD--NPA 260 (429)
T ss_pred HHHHHHHHHcCCCEEEEECCCC---cHHHHHHHHHcCCEEEEECCCCChHHHHHHHHH-HHhhcCC-eEeCCCCC--CHH
Confidence 9999999999999999999987 689999999999999999875 5577766654 4443223 55566654 444
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCC-CccccccccCCC
Q 017391 267 PIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLD-SGKHAATLAKGE 344 (372)
Q Consensus 267 ~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~-~~~~a~~l~~G~ 344 (372)
+ +..||.+++.||++|+ +..+|+||+|+|+||+++|++.+++ ..|++|||||||++++.. .+....+...|.
T Consensus 261 n--~~ah~~ttg~EI~eq~----~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Gl 334 (429)
T PLN03013 261 N--PKIHYETTGPEIWDDT----KGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGI 334 (429)
T ss_pred H--HHHHHHHHHHHHHHhc----CCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcc
Confidence 3 2349999999999885 3358999999999999999999998 589999999999998654 222223333342
Q ss_pred -ceeecCcceeeeeCCCCccccccccc
Q 017391 345 -VGVYHGAMSYLLQDEEGQILGTHSVG 370 (372)
Q Consensus 345 -~gv~~g~~~~~l~d~~~~~~~~~si~ 370 (372)
.+.++........|+.-+|.|..+++
T Consensus 335 g~~~ip~~~~~~~vD~vv~VsD~ea~~ 361 (429)
T PLN03013 335 GAGFIPKNLDQKIMDEVIAISSEEAIE 361 (429)
T ss_pred cCCcCCHhHHHHhccEEEEECHHHHHH
Confidence 22223333334567777777666554
No 23
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=2.8e-38 Score=309.69 Aligned_cols=199 Identities=24% Similarity=0.251 Sum_probs=168.9
Q ss_pred HHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHH
Q 017391 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHG 188 (372)
Q Consensus 109 ~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G 188 (372)
.+.+.+|.+.++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.+.+++..|+++|+||||
T Consensus 7 ~~a~~~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g 79 (322)
T PRK07476 7 YRARRRIAGRVR-RTPLVASASLSARA------GVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVTASTGNHG 79 (322)
T ss_pred HHHHHHHhCCCC-CCCceechhhHHhh------CCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhCCeEEEECCChHH
Confidence 345677788885 89999999999886 67999999999999999999999999888888876645567899999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhH
Q 017391 189 VATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPI 268 (372)
Q Consensus 189 ~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 268 (372)
+|+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++++++++.+.+.+ +.++. +.+| +.+++ ||+.
T Consensus 80 ~alA~~a~~~G~~~~i~vp~~~---~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~-~~~~~-g~~~-~~~~~--n~~~- 150 (322)
T PRK07476 80 RALAYAARALGIRATICMSRLV---PANKVDAIRALGAEVRIVGRSQDDAQAEVER-LVREE-GLTM-VPPFD--DPRI- 150 (322)
T ss_pred HHHHHHHHHhCCCEEEEeCCCC---CHHHHHHHHHcCCEEEEECCCHHHHHHHHHH-HHHhc-CCEE-eCCCC--Ccce-
Confidence 9999999999999999999987 5789999999999999999999998877755 44432 4444 44543 3332
Q ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCC
Q 017391 269 MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFG 330 (372)
Q Consensus 269 lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~ 330 (372)
.+|+.+++.||++|+. .+|+||+|+|+||+++|++.+|+ .++++|||||||++++
T Consensus 151 --~~g~~t~~~Ei~~Q~~-----~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~ 206 (322)
T PRK07476 151 --IAGQGTIGLEILEALP-----DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGA 206 (322)
T ss_pred --eechhHHHHHHHHhCc-----CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCch
Confidence 3589999999999973 37999999999999999999998 6889999999999875
No 24
>PLN02550 threonine dehydratase
Probab=100.00 E-value=1.7e-38 Score=329.72 Aligned_cols=223 Identities=24% Similarity=0.275 Sum_probs=177.0
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
.|...+.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|+|.+.+..+.+......|+++|+||||+
T Consensus 98 il~~~v~~~i-~~TPL~~s~~LS~~~------g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV~aSaGNhAq 170 (591)
T PLN02550 98 ILSAKVYDVA-IESPLQLAKKLSERL------GVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHAQ 170 (591)
T ss_pred HHhhhhhccc-cCChhhhhHHhhHhh------CCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEEEECCCHHHH
Confidence 4555667777 489999999999987 689999999999999999999999987664333333355578999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCCh-hH
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPC-PI 268 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~-~~ 268 (372)
++|++|+++|++|+||||++. +..|+++++.+||+|+.++++++++.+.+.+ ++++ .+.+|+ ||| +.
T Consensus 171 gvA~aA~~lGika~IvmP~~t---p~~Kv~~~r~~GAeVvl~g~~~dea~~~A~~-la~e-~g~~fi-------~pfddp 238 (591)
T PLN02550 171 GVALSAQRLGCDAVIAMPVTT---PEIKWQSVERLGATVVLVGDSYDEAQAYAKQ-RALE-EGRTFI-------PPFDHP 238 (591)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCCCHHHHHHHHHH-HHHh-cCCEEE-------CCCCCh
Confidence 999999999999999999987 5789999999999999999999999888765 4443 244554 444 12
Q ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCCC----------cccc
Q 017391 269 MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLDS----------GKHA 337 (372)
Q Consensus 269 lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~~----------~~~a 337 (372)
.+++||+|+|.||++|+.+ .+|+||||+|+||+++|++.+++ .+|.+|||||||++++... ....
T Consensus 239 ~viaGqgTig~EI~eQl~~----~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~ 314 (591)
T PLN02550 239 DVIAGQGTVGMEIVRQHQG----PLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQV 314 (591)
T ss_pred HHHHHHHHHHHHHHHHcCC----CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCC
Confidence 3467999999999999742 48999999999999999999998 6899999999999985421 1223
Q ss_pred ccccCCCceeecCcceee
Q 017391 338 ATLAKGEVGVYHGAMSYL 355 (372)
Q Consensus 338 ~~l~~G~~gv~~g~~~~~ 355 (372)
.+++.|...-..|..++-
T Consensus 315 ~tiAdGiav~~~G~~t~~ 332 (591)
T PLN02550 315 GGFADGVAVKEVGEETFR 332 (591)
T ss_pred CCccceeecCCCCHHHHH
Confidence 455566543345555553
No 25
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1.2e-38 Score=318.78 Aligned_cols=187 Identities=29% Similarity=0.350 Sum_probs=161.6
Q ss_pred CCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcE
Q 017391 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDC 202 (372)
Q Consensus 123 TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~ 202 (372)
|||+++++|++.+ +.+||+|+|++|||||||||+|.+++..+.+.++...|+++|+||||.|+|++|+.+|++|
T Consensus 1 TPl~~~~~ls~~~------g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~ 74 (380)
T TIGR01127 1 TPLIYSTTLSDIT------GSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKA 74 (380)
T ss_pred CCceehHHHHHHh------CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 8999999999987 6799999999999999999999999988887777556777899999999999999999999
Q ss_pred EEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHH
Q 017391 203 TVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETR 282 (372)
Q Consensus 203 ~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~ 282 (372)
+|+||+.. ++.|+++|+.+||+|+.+++++++|.+.+.+ +.++ .+.+| +.+++ |++ +++||++++.|++
T Consensus 75 ~iv~p~~~---~~~k~~~~~~~GA~V~~~~~~~~~a~~~a~~-~~~~-~~~~~-~~~~~--~~~---~~~g~~t~~~Ei~ 143 (380)
T TIGR01127 75 VIVMPESA---PPSKVKATKSYGAEVILHGDDYDEAYAFATS-LAEE-EGRVF-VHPFD--DEF---VMAGQGTIGLEIM 143 (380)
T ss_pred EEEEcCCC---cHHHHHHHHHCCCEEEEECCCHHHHHHHHHH-HHHh-cCCEe-cCCCC--Chh---hhhhhHHHHHHHH
Confidence 99999987 5789999999999999999999999887754 4444 24444 33332 222 3569999999999
Q ss_pred HHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 283 KQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 283 ~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
+|+. .+|+||+|+|+||+++|++.+++ ..|.+|||||||++++.
T Consensus 144 ~q~~-----~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~ 188 (380)
T TIGR01127 144 EDIP-----DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPS 188 (380)
T ss_pred HhCC-----CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChH
Confidence 9863 48999999999999999999998 68999999999999864
No 26
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-38 Score=308.42 Aligned_cols=199 Identities=23% Similarity=0.243 Sum_probs=166.3
Q ss_pred HHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC-CeEEEecCcchH
Q 017391 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR-KSIVAATGAGQH 187 (372)
Q Consensus 109 ~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~-~~~V~~aSsGN~ 187 (372)
.+.++.+.+.++ +|||+++++|++.+ +.+||+|+|++|||||||||++++.+..+.+++. ...|+++|+|||
T Consensus 9 ~~a~~~i~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~~vv~aSsGN~ 81 (322)
T PRK06110 9 EAAAAVVYAAMP-PTPQYRWPLLAERL------GCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNH 81 (322)
T ss_pred HHHHHHHhCcCc-CCCcccchhHHHHh------CCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCceEEEECCCHH
Confidence 345667778884 99999999999887 6799999999999999999999999887776653 334666789999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChh
Q 017391 188 GVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCP 267 (372)
Q Consensus 188 G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 267 (372)
|.|+|++|+.+|++|+||||+.. ++.|+++|+.+||+|+.++++++++.+.+.+ ++++ .+.+| +.++ ||.
T Consensus 82 g~alA~~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~~~~~~~~~a~~-~~~~-~~~~~-~~~~---~~~- 151 (322)
T PRK06110 82 GQSVAFAARRHGLAATIVVPHGN---SVEKNAAMRALGAELIEHGEDFQAAREEAAR-LAAE-RGLHM-VPSF---HPD- 151 (322)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECCCHHHHHHHHHH-HHHh-cCCEE-cCCC---CCh-
Confidence 99999999999999999999987 5678899999999999999999999887765 4443 24444 3332 333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 268 IMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 268 ~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
..+||.++++|+++|+. .+|+||+|+|+||+++|++.+++ .++.+|||+|||++++.
T Consensus 152 --~~~G~~t~~~Ei~~q~~-----~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~ 209 (322)
T PRK06110 152 --LVRGVATYALELFRAVP-----DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPA 209 (322)
T ss_pred --HHhccchHHHHHHhhCC-----CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChH
Confidence 24699999999999863 37999999999999999999997 67899999999999854
No 27
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=307.87 Aligned_cols=223 Identities=28% Similarity=0.276 Sum_probs=182.3
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
.++..+.+.+. .|||.+.-.||+.+ +.++|+|+|++||+||||.||+.+++...-++++...|+++|+||||.
T Consensus 55 ~~~~~i~~~~~-~TPl~~s~~lS~~~------g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gViasSaGNha~ 127 (457)
T KOG1250|consen 55 SAHFKIYPVIV-ETPLLKSVALSKKA------GMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVIASSAGNHAQ 127 (457)
T ss_pred hhhhcccccee-cccchhhhhhhhhc------CCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceEEecCccHHH
Confidence 45555666664 79999999999987 889999999999999999999999987544555445555578999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhH-
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPI- 268 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~- 268 (372)
|+|++|+++|++|+|+||..+ +.-|++.++.+||+|+..+.++|+|...+++...+ .+..|+ |||+.
T Consensus 128 a~Ayaa~~LgipaTIVmP~~t---p~~kiq~~~nlGA~Vil~G~~~deAk~~a~~lAke--~gl~yI-------~pfDhP 195 (457)
T KOG1250|consen 128 AAAYAARKLGIPATIVMPVAT---PLMKIQRCRNLGATVILSGEDWDEAKAFAKRLAKE--NGLTYI-------PPFDHP 195 (457)
T ss_pred HHHHHHHhcCCceEEEecCCC---hHHHHHHHhccCCEEEEecccHHHHHHHHHHHHHh--cCceec-------CCCCCc
Confidence 999999999999999999988 56799999999999999999999999999765433 356665 66632
Q ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCCC----------cccc
Q 017391 269 MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLDS----------GKHA 337 (372)
Q Consensus 269 lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~~----------~~~a 337 (372)
.+|+||+|++.||.+|+++ .+++|+||||+||+++||+.+++ .+|+++|||||+++|..+. -+..
T Consensus 196 ~I~aGqgTig~EIl~ql~~----~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i 271 (457)
T KOG1250|consen 196 DIWAGQGTIGLEILEQLKE----PDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKI 271 (457)
T ss_pred hhhcCcchHHHHHHHhhcC----CCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccc
Confidence 3688999999999999864 24599999999999999999998 6899999999999996422 2234
Q ss_pred ccccCCCceeecCcceee
Q 017391 338 ATLAKGEVGVYHGAMSYL 355 (372)
Q Consensus 338 ~~l~~G~~gv~~g~~~~~ 355 (372)
.+++.|...-.-|..+|.
T Consensus 272 ~s~AdglaV~~Vg~~tf~ 289 (457)
T KOG1250|consen 272 TSLADGLAVKTVGENTFE 289 (457)
T ss_pred cchhcccccchhhHHHHH
Confidence 466666655555665553
No 28
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=6.7e-38 Score=303.71 Aligned_cols=197 Identities=20% Similarity=0.266 Sum_probs=162.0
Q ss_pred HhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC---CeEEEecCcchHHHH
Q 017391 114 ALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR---KSIVAATGAGQHGVA 190 (372)
Q Consensus 114 ~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~---~~~V~~aSsGN~G~A 190 (372)
.+.+.++ +|||+++++|++.. +.+||+|+|++|||||||||++.+++..+++.|. ...|+++|+||||.|
T Consensus 5 ~i~~~~g-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~a 77 (296)
T PRK11761 5 TLEDTIG-NTPLVKLQRLPPDR------GNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIA 77 (296)
T ss_pred cHHHhcC-CCceEeccccccCC------CCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHH
Confidence 4556675 89999999998765 6799999999999999999999999999988886 133556899999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC--chhHHHHHHHHHHHhccCCcEEEeccccCCCChhH
Q 017391 191 TAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPI 268 (372)
Q Consensus 191 vA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~--~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 268 (372)
+|++|+.+|++|+||||+.. +++|+++|+.+||+|+.++. +++++.+.+.+ +.++ .+. +.+.++.+ +..
T Consensus 78 lA~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~-l~~~-~~~-~~~~~~~n--~~~- 148 (296)
T PRK11761 78 LAMIAAIKGYRMKLIMPENM---SQERRAAMRAYGAELILVPKEQGMEGARDLALQ-MQAE-GEG-KVLDQFAN--PDN- 148 (296)
T ss_pred HHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHH-HHhc-cCC-EecCCCCC--hhh-
Confidence 99999999999999999987 57899999999999999996 78888766643 4443 233 44455432 221
Q ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 269 MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 269 lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
...++.+++.||++|+. ..+|+||+|+|+||+++|++.+++ ..+.+|||||||+++..
T Consensus 149 -~~~~~~t~~~Ei~eq~~----~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~ 207 (296)
T PRK11761 149 -PLAHYETTGPEIWRQTE----GRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSS 207 (296)
T ss_pred -HHHHhhchHHHHHHhcC----CCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCc
Confidence 23478999999999863 247999999999999999999998 57899999999998753
No 29
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=2.9e-38 Score=319.90 Aligned_cols=200 Identities=27% Similarity=0.395 Sum_probs=162.4
Q ss_pred HHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHH
Q 017391 111 LSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVA 190 (372)
Q Consensus 111 l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~A 190 (372)
.++.+.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|+|.+++..+.+......|+++|+||||.|
T Consensus 15 a~~~i~~~i-~~TPl~~~~~ls~~~------g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~~Vv~aSsGN~g~a 87 (420)
T PRK08639 15 AAKRLKDVV-PETPLQRNDYLSEKY------GANVYLKREDLQPVRSYKLRGAYNAISQLSDEELAAGVVCASAGNHAQG 87 (420)
T ss_pred HHHHHhCcC-cCCCccchHHHHHHh------CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHHH
Confidence 445666777 489999999999876 6799999999999999999999998875433222345666889999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE---EEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCCh-
Q 017391 191 TAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV---KAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPC- 266 (372)
Q Consensus 191 vA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V---i~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~- 266 (372)
+|++|+.+|++|+||||+.. ++.|+.+++.+||+| +.++++++++.+.+.+. +++ .+.+|+ |||
T Consensus 88 lA~~a~~~G~~~~IvmP~~~---~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~-a~~-~g~~~~-------~~~~ 155 (420)
T PRK08639 88 VAYACRHLGIPGVIFMPVTT---PQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEY-AEE-TGATFI-------PPFD 155 (420)
T ss_pred HHHHHHHcCCCEEEEECCCC---hHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHH-HHh-cCCccc-------CCCC
Confidence 99999999999999999987 678999999999974 44566899999888654 443 244443 444
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 267 PIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 267 ~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
+..+++||+++|.||++|+.+. + .||+||+|+|+||+++|++.+++ .+|++|||||||++++.
T Consensus 156 ~~~~~~G~~tig~EI~eq~~~~-~-~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~ 219 (420)
T PRK08639 156 DPDVIAGQGTVAVEILEQLEKE-G-SPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAAS 219 (420)
T ss_pred ChhHhcchhHHHHHHHHhcccc-C-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCc
Confidence 1224579999999999997521 1 38999999999999999999998 58999999999999865
No 30
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=8.8e-38 Score=308.19 Aligned_cols=226 Identities=24% Similarity=0.333 Sum_probs=175.5
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
..+++|++++ .+|||++++.+ +||+|+|++|||||||||++++.+..+.+.+....|+++|+||||.
T Consensus 28 ~A~~~i~~~i-~~TPL~~~~~l------------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~~VV~aSsGN~G~ 94 (349)
T PRK08813 28 AAQARLRRYL-SPTPLHYAERF------------GVWLKLENLQRTGSYKVRGALNALLAGLERGDERPVICASAGNHAQ 94 (349)
T ss_pred HHHHHHhCcC-CCCCeEECCCC------------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCCeEEEECCCHHHH
Confidence 4567788888 58999998542 4999999999999999999999999888888765566789999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHH
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIM 269 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~l 269 (372)
|+|++|+.+|++|+||||++. ++.|+.+++.+||+|+.++++++++.+.+.+ ++++ .+.+| +++++ ||+
T Consensus 95 alA~aa~~~Gi~~~IvvP~~~---~~~K~~~i~~~GAeVv~~g~~~~~a~~~a~~-la~~-~g~~~-v~~~~--np~--- 163 (349)
T PRK08813 95 GVAWSAYRLGVQAITVMPHGA---PQTKIAGVAHWGATVRQHGNSYDEAYAFARE-LADQ-NGYRF-LSAFD--DPD--- 163 (349)
T ss_pred HHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECCCHHHHHHHHHH-HHHh-cCCEE-cCccC--ChH---
Confidence 999999999999999999987 6799999999999999999999999877754 4443 24444 33332 333
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcCCCCcEEEEEecCCCCCCC---------ccccccc
Q 017391 270 VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDS---------GKHAATL 340 (372)
Q Consensus 270 v~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~~~~vrvigVe~~gs~~~~---------~~~a~~l 340 (372)
+++||+|+++||++| .||+||+|+|+||+++|++.+++. +.+|||||||++++... .....++
T Consensus 164 ~i~G~~Tig~EI~e~-------~pD~VvvpvGgGGliaGia~~lk~-~~~rVigVqpega~~~~~s~~g~~~~~~~~~ti 235 (349)
T PRK08813 164 VIAGQGTVGIELAAH-------APDVVIVPIGGGGLASGVALALKS-QGVRVVGAQVEGVDSMARAIRGDLREIAPVATL 235 (349)
T ss_pred HHHHHHHHHHHHHcC-------CCCEEEEEeCccHHHHHHHHHHhc-CCCEEEEEEECCCchHHHHHcCCCcccCCCCce
Confidence 457999999999765 379999999999999999999983 57999999999985411 1123466
Q ss_pred cCCCceeecCcceee----eeCCCCcccccc
Q 017391 341 AKGEVGVYHGAMSYL----LQDEEGQILGTH 367 (372)
Q Consensus 341 ~~G~~gv~~g~~~~~----l~d~~~~~~~~~ 367 (372)
+.|.....+|..++. ..|+.-.+.|..
T Consensus 236 adgl~~~~p~~~~~~i~~~~vd~vv~Vsd~e 266 (349)
T PRK08813 236 ADGVKVKIPGFLTRRLCSSLLDDVVIVREAE 266 (349)
T ss_pred ecccccCCcchhHHHHHHHhCCeEEEECHHH
Confidence 666543334444432 244444444443
No 31
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.7e-37 Score=300.82 Aligned_cols=196 Identities=22% Similarity=0.300 Sum_probs=161.3
Q ss_pred cccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC---CeEEEecCcchHHHHHHH
Q 017391 117 DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR---KSIVAATGAGQHGVATAA 193 (372)
Q Consensus 117 ~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~---~~~V~~aSsGN~G~AvA~ 193 (372)
++++ +|||+++++ ...+ +.+||+|+|++|||||||||++++++..+++.|+ ...|+++|+||||.|+|+
T Consensus 3 ~~~g-~TPl~~~~~-~~~~------g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 74 (298)
T TIGR01139 3 ELIG-NTPLVRLNR-IEGC------NANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAM 74 (298)
T ss_pred cccC-CCceEEccc-cCCC------CceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHH
Confidence 4564 899999998 4443 6799999999999999999999999998988886 134566899999999999
Q ss_pred HHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch--hHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHH
Q 017391 194 ACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVR 271 (372)
Q Consensus 194 aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~--~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~ 271 (372)
+|+++|++|+||||++. ++.|+++|+.+||+|+.+++++ +++.+.+. ++.++....+++++++. |+.+. .
T Consensus 75 ~a~~~Gl~~~i~vp~~~---~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~--n~~~~--~ 146 (298)
T TIGR01139 75 VAAARGYKLILTMPETM---SIERRKLLKAYGAELVLTPGAEGMKGAIAKAE-EIAASTPNSYFMLQQFE--NPANP--E 146 (298)
T ss_pred HHHHcCCeEEEEeCCcc---CHHHHHHHHHcCCEEEEECCCCCHHHHHHHHH-HHHHhCCCcEEcccccC--CcccH--H
Confidence 99999999999999987 5788999999999999999865 56676664 45554333465666654 33322 2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCC
Q 017391 272 EFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLD 332 (372)
Q Consensus 272 ~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~ 332 (372)
.||.+++.|+++|+. ..||+||+|+|+||+++|++.+|+ ..+.+|||+|||.+++..
T Consensus 147 ~g~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~ 204 (298)
T TIGR01139 147 IHRKTTGPEIWRDTD----GKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVL 204 (298)
T ss_pred HHHHHHHHHHHHHhC----CCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCccc
Confidence 489999999999873 248999999999999999999998 578999999999998653
No 32
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=2.1e-37 Score=300.37 Aligned_cols=195 Identities=21% Similarity=0.269 Sum_probs=163.4
Q ss_pred cccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC---CeEEEecCcchHHHHHHH
Q 017391 117 DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR---KSIVAATGAGQHGVATAA 193 (372)
Q Consensus 117 ~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~---~~~V~~aSsGN~G~AvA~ 193 (372)
++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+.+..+++.|. ...|+++|+||||+|+|+
T Consensus 3 ~~vg-~TPL~~~~~l~~~~------g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 75 (299)
T TIGR01136 3 ELIG-NTPLVRLNRLAPGC------DARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAM 75 (299)
T ss_pred cccC-CCceEEccccCCCC------CceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHH
Confidence 4564 89999999999875 5799999999999999999999999998888876 134567899999999999
Q ss_pred HHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc--hhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHH
Q 017391 194 ACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVR 271 (372)
Q Consensus 194 aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~--~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~ 271 (372)
+|+.+|++|+||||++. ++.|+++|+.+||+|+.++++ ++++.+.+.+ +.++. ..+++++++.+ +... .
T Consensus 76 ~a~~~G~~~~i~vp~~~---~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~-~~~~~-~~~~~~~~~~~--~~~~--~ 146 (299)
T TIGR01136 76 VAAAKGYKLILTMPETM---SLERRKLLRAYGAELILTPAEEGMKGAIDKAEE-LAAET-NKYVMLDQFEN--PANP--E 146 (299)
T ss_pred HHHHcCCcEEEEECCCC---CHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHH-HHhhC-CCeEecCCCCC--chhH--H
Confidence 99999999999999986 578999999999999999985 6888877744 44442 45666666542 2221 2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 272 EFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 272 ~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
.||.+++.|+++|+. ..||+||+|+|+||+++|++.+++ .++.+|||||||++++.
T Consensus 147 ~g~~t~~~Ei~~ql~----~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~ 203 (299)
T TIGR01136 147 AHYKTTGPEIWRDTD----GRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPV 203 (299)
T ss_pred HHHHHHHHHHHHhcC----CCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCcc
Confidence 489999999999873 248999999999999999999998 67899999999999864
No 33
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=2e-37 Score=319.04 Aligned_cols=199 Identities=26% Similarity=0.337 Sum_probs=166.7
Q ss_pred HHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHH-HcCCCeEEEecCcchH
Q 017391 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAK-RMGRKSIVAATGAGQH 187 (372)
Q Consensus 109 ~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~-~~g~~~~V~~aSsGN~ 187 (372)
+.|...+.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|+|.+.+..+. +.+... |+++|+|||
T Consensus 5 ~~~~~~v~~~i-~~TPL~~~~~Ls~~~------g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~g-VV~aSaGNh 76 (499)
T TIGR01124 5 AILTARVYEAA-QETPLQKAAKLSERL------GNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARG-VIAASAGNH 76 (499)
T ss_pred HHHHhHhhCcc-CCCCeeehHHHHHHh------CCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCE-EEEECCCHH
Confidence 45666777777 599999999999987 679999999999999999999999887553 334444 555789999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCCh-
Q 017391 188 GVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPC- 266 (372)
Q Consensus 188 G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~- 266 (372)
|.++|++|+++|++|+|+||++. ++.|+..++.+||+|+.++++++++...+.+ ++++ .+.+|+ +||
T Consensus 77 a~~vA~aa~~~Gi~~~IvmP~~t---p~~Kv~~~r~~GA~Vvl~g~~~d~a~~~a~~-la~~-~g~~~i-------~p~~ 144 (499)
T TIGR01124 77 AQGVAFSAARLGLKALIVMPETT---PDIKVDAVRGFGGEVVLHGANFDDAKAKAIE-LSQE-KGLTFI-------HPFD 144 (499)
T ss_pred HHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEeCcCHHHHHHHHHH-HHHh-cCCEee-------CCCC
Confidence 99999999999999999999987 6789999999999999999999999888754 4444 344554 444
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 267 PIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 267 ~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
+..+++||+|+|.||++|+. ..+|+||+|+|+||+++|++.+++ ..|.+|||||||++++.
T Consensus 145 ~~~~i~G~gtig~EI~~q~~----~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~ 206 (499)
T TIGR01124 145 DPLVIAGQGTLALEILRQVA----NPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDC 206 (499)
T ss_pred ChHHHHhhHHHHHHHHHhCC----CCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChH
Confidence 12345799999999999863 258999999999999999999998 68899999999999853
No 34
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=4.5e-38 Score=317.36 Aligned_cols=236 Identities=27% Similarity=0.379 Sum_probs=179.1
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
..++++.+.++ +|||+++++|++.+ +.+||+|+|++|||||||+|+|.+.+..+.+......|+++|+||||.
T Consensus 5 ~a~~~i~~~i~-~TPl~~~~~ls~~~------g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~gvv~aSsGN~g~ 77 (409)
T TIGR02079 5 AARKRLKEVVP-HTPLQLNERLSEKY------GANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKGVVCASAGNHAQ 77 (409)
T ss_pred HHHHHHhCcCC-CCCccccHHHHHHh------CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHH
Confidence 35567777884 89999999999887 679999999999999999999999887543323233456678999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCE---EEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCCh
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ---VKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPC 266 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~---Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 266 (372)
++|++|+++|++|+||||+.. ++.|+.+++.+||+ |+.++++++++.+.+.+. +++ .+.+|+ .+++ ||+
T Consensus 78 a~A~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~-~~~-~g~~~~-~~~~--~~~ 149 (409)
T TIGR02079 78 GFAYACRHLGVHGTVFMPATT---PKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREH-VED-HGGTFI-PPFD--DPR 149 (409)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHH-HHh-cCCEEe-CCCC--CHh
Confidence 999999999999999999987 57899999999997 455677899998888654 443 244454 3322 222
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCCC-----c-----c
Q 017391 267 PIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLDS-----G-----K 335 (372)
Q Consensus 267 ~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~~-----~-----~ 335 (372)
+++||++++.||++|+. ..||+||+|+|+||+++|++.+++ .+|++|||||||++++... + .
T Consensus 150 ---~~~g~~ti~~Ei~~q~~----~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~ 222 (409)
T TIGR02079 150 ---IIEGQGTVAAEILDQLP----EKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLD 222 (409)
T ss_pred ---HhhhhHHHHHHHHHhcC----CCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecC
Confidence 35699999999999974 248999999999999999999998 6899999999999986421 1 1
Q ss_pred ccccccCCCceeecCccee----eeeCCCCcccccc
Q 017391 336 HAATLAKGEVGVYHGAMSY----LLQDEEGQILGTH 367 (372)
Q Consensus 336 ~a~~l~~G~~gv~~g~~~~----~l~d~~~~~~~~~ 367 (372)
...+++.|...-.+|..+| .+.|+.-++.|..
T Consensus 223 ~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e 258 (409)
T TIGR02079 223 KIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGA 258 (409)
T ss_pred CCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHH
Confidence 2345566654434454443 2355555555444
No 35
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=2.4e-37 Score=304.00 Aligned_cols=200 Identities=23% Similarity=0.283 Sum_probs=159.8
Q ss_pred hhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC---CeEEEecCcchHHHHH
Q 017391 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR---KSIVAATGAGQHGVAT 191 (372)
Q Consensus 115 i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~---~~~V~~aSsGN~G~Av 191 (372)
+...++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+++.|+ ...|+++|+||||.|+
T Consensus 7 ~~~~~g-~TPL~~~~~l~~~~------g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~al 79 (330)
T PRK10717 7 VSDTIG-NTPLIRLNRASEAT------GCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGL 79 (330)
T ss_pred HHHHhC-CCceEEccccCCCC------CCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHH
Confidence 344564 89999999999876 6799999999999999999999999998888876 1345568999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc-hhH---HHHHHH---HHHHhccCCcEEEeccccCCC
Q 017391 192 AAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC-FKE---ASSEAI---RNWVGNLEKSYYLTGTVVGPH 264 (372)
Q Consensus 192 A~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~-~~d---a~~~a~---~~~~~~~~~~~y~~~s~~~~~ 264 (372)
|++|+.+|++|+||||++. ++.|+++|+.+||+|+.++++ +++ ..+.+. ++..++....+++++++. |
T Consensus 80 A~~a~~~G~~~~vv~p~~~---~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~--~ 154 (330)
T PRK10717 80 ALVAAARGYKTVIVMPETQ---SQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFD--N 154 (330)
T ss_pred HHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCC--C
Confidence 9999999999999999987 578999999999999999975 432 222221 222222223456655543 3
Q ss_pred ChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCC
Q 017391 265 PCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLD 332 (372)
Q Consensus 265 p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~ 332 (372)
|.. +..||.+++.||.+|+. ..+|+||+|+|+||+++|++.+++ ..+++|||+|||++++..
T Consensus 155 ~~~--~~~g~~t~a~Ei~~ql~----~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~ 217 (330)
T PRK10717 155 PAN--REAHYETTGPEIWEQTD----GKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALY 217 (330)
T ss_pred hhh--HHHHHHhHHHHHHHhcC----CCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccc
Confidence 332 23589999999998863 358999999999999999999998 578999999999998653
No 36
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=2.5e-37 Score=298.96 Aligned_cols=195 Identities=19% Similarity=0.271 Sum_probs=160.1
Q ss_pred hcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC---CeEEEecCcchHHHHHH
Q 017391 116 RDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR---KSIVAATGAGQHGVATA 192 (372)
Q Consensus 116 ~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~---~~~V~~aSsGN~G~AvA 192 (372)
.++++ +|||+++++|++.. +.+||+|+|++|||||||||++.+++..+.+.|+ ...|+++|+||||.|+|
T Consensus 3 ~~~ig-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA 75 (290)
T TIGR01138 3 EQTVG-NTPLVRLQRMGPEN------GSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALA 75 (290)
T ss_pred HHhCC-CCceEEccccccCC------CCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHH
Confidence 45674 89999999998775 6799999999999999999999999999988887 24466689999999999
Q ss_pred HHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC--chhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHH
Q 017391 193 AACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMV 270 (372)
Q Consensus 193 ~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~--~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv 270 (372)
++|+.+|++|+|+||+.. ++.|+++|+.+||+|+.+++ +++++.+.+. ++.++. ..+| +.++.++. . .
T Consensus 76 ~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~-~l~~~~-~~~~-~~~~~~~~--~--~ 145 (290)
T TIGR01138 76 MIAALKGYRMKLLMPDNM---SQERKAAMRAYGAELILVTKEEGMEGARDLAL-ELANRG-EGKL-LDQFNNPD--N--P 145 (290)
T ss_pred HHHHHcCCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCCCChHHHHHHHH-HHHHhC-CCCC-CCccCCcc--c--H
Confidence 999999999999999987 57899999999999999986 4777766654 444442 2233 35544322 1 1
Q ss_pred HhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 271 REFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 271 ~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
..+|.+++.||++|+. ..+|+||+|+|+||+++|++.+++ .++.+|||+|||.++..
T Consensus 146 ~~~~~t~~~Ei~~q~~----~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~ 203 (290)
T TIGR01138 146 YAHYTSTGPEIWQQTG----GRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSS 203 (290)
T ss_pred HHHhHhHHHHHHHHcC----CCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Confidence 2367899999998862 348999999999999999999998 68899999999999754
No 37
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.6e-37 Score=318.98 Aligned_cols=200 Identities=26% Similarity=0.316 Sum_probs=167.0
Q ss_pred HHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHH-cCCCeEEEecCcchH
Q 017391 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKR-MGRKSIVAATGAGQH 187 (372)
Q Consensus 109 ~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~-~g~~~~V~~aSsGN~ 187 (372)
..|..++.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|+|.+.+..+.+ .++.. |+++|+|||
T Consensus 8 ~~~~~~v~~~~-~~TPL~~~~~Ls~~~------g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~g-vV~aSaGNh 79 (504)
T PRK09224 8 KILTARVYDVA-QETPLEKAPKLSARL------GNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARG-VITASAGNH 79 (504)
T ss_pred HHHHHHhcCcC-CCCCceehhHhHHHh------CCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCE-EEEECcCHH
Confidence 45667778888 589999999999987 6799999999999999999999998875543 34445 455789999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChh
Q 017391 188 GVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCP 267 (372)
Q Consensus 188 G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 267 (372)
|.|+|++|+.+|++|+||||+.. +..|+..++.+||+|+.++++++++.+.+.+ ++++ .+.+|+ .++. ||
T Consensus 80 a~avA~aa~~lGi~~~IvmP~~t---p~~K~~~~r~~GA~Vi~~g~~~~~a~~~a~~-l~~~-~g~~~v-~~f~--~~-- 149 (504)
T PRK09224 80 AQGVALSAARLGIKAVIVMPVTT---PDIKVDAVRAFGGEVVLHGDSFDEAYAHAIE-LAEE-EGLTFI-HPFD--DP-- 149 (504)
T ss_pred HHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECCCHHHHHHHHHH-HHHh-cCCEEe-CCCC--Cc--
Confidence 99999999999999999999987 5789999999999999999999999988854 4444 345554 2222 22
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 268 IMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 268 ~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
.+++||+|++.||++|+. ..+|+||+|+|+||+++|++.+++ ..|.+|||||||++++.
T Consensus 150 -~~i~G~gTi~~EI~~q~~----~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~ 209 (504)
T PRK09224 150 -DVIAGQGTIAMEILQQHP----HPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSAC 209 (504)
T ss_pred -HHHHhHHHHHHHHHHhcc----CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChH
Confidence 245799999999999874 248999999999999999999998 68999999999999864
No 38
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=5.2e-37 Score=296.42 Aligned_cols=203 Identities=25% Similarity=0.288 Sum_probs=164.9
Q ss_pred CCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCC---eEEEecCcchHHHHHHHHHHHc
Q 017391 122 ETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRK---SIVAATGAGQHGVATAAACAKL 198 (372)
Q Consensus 122 ~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~---~~V~~aSsGN~G~AvA~aa~~~ 198 (372)
+|||+++++|++.+ +.+||+|+|++|||||||+|++.+.+..+.+.|+. ..|+++|+||||.|+|++|+++
T Consensus 2 ~TPl~~~~~l~~~~------g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~ 75 (291)
T cd01561 2 NTPLVRLNRLSPGT------GAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAK 75 (291)
T ss_pred CCCEEEccccCCCC------CCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHc
Confidence 79999999999875 67999999999999999999999999988888872 4455688999999999999999
Q ss_pred CCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch----hHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhH
Q 017391 199 ALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF----KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQ 274 (372)
Q Consensus 199 Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~----~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq 274 (372)
|++|+||||+.. ++.|+++|+.+||+|+.+++.+ +++.+.+.+ +.++. ..+|+++++. ||+.. +++
T Consensus 76 G~~~~i~vp~~~---~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~-~~~~~-~~~~~~~~~~--~p~~~---~g~ 145 (291)
T cd01561 76 GYRFIIVMPETM---SEEKRKLLRALGAEVILTPEAEADGMKGAIAKARE-LAAET-PNAFWLNQFE--NPANP---EAH 145 (291)
T ss_pred CCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHH-HHhhC-CCcEEecCCC--CchHH---HHH
Confidence 999999999986 5789999999999999999876 777766644 44432 2355555432 44432 355
Q ss_pred -HHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCC-CccccccccCCC
Q 017391 275 -SIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLD-SGKHAATLAKGE 344 (372)
Q Consensus 275 -~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~-~~~~a~~l~~G~ 344 (372)
.++++||.+|+. ..||+||+|+|+||+++|++.+++ ..+.++||||||++++.. ......++..|.
T Consensus 146 ~~t~~~Ei~~ql~----~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi 214 (291)
T cd01561 146 YETTAPEIWEQLD----GKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGI 214 (291)
T ss_pred HHHHHHHHHHHcC----CCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCC
Confidence 499999999874 258999999999999999999998 578999999999998765 222334444443
No 39
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=4.1e-37 Score=300.90 Aligned_cols=198 Identities=26% Similarity=0.290 Sum_probs=164.1
Q ss_pred HHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHH-cCCCeEEEecCcchH
Q 017391 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKR-MGRKSIVAATGAGQH 187 (372)
Q Consensus 109 ~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~-~g~~~~V~~aSsGN~ 187 (372)
.+.++.+.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||||++.+.+..+.+ .+.+. |+++|+|||
T Consensus 7 ~~a~~~i~~~i-~~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~-vv~aSsGN~ 78 (317)
T TIGR02991 7 ERAAARISGRV-EETPLVESPSLSELC------GVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRAAG-VVAASTGNH 78 (317)
T ss_pred HHHHHHHhCcC-CCCCceechhhHHhh------CCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhccCCe-EEEECCCHH
Confidence 34567778888 499999999999876 6799999999999999999999998876543 34444 456789999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChh
Q 017391 188 GVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCP 267 (372)
Q Consensus 188 G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 267 (372)
|.|+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++++++++.+.+.+ ++++ .+.+ .+++++ ||+
T Consensus 79 g~alA~~a~~~G~~~~v~~p~~~---~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~-~~~~-~g~~-~~~~~~--n~~- 149 (317)
T TIGR02991 79 GRALAYAAAEEGVRATICMSELV---PQNKVDEIRRLGAEVRIVGRSQDDAQEEVER-LVAD-RGLT-MLPPFD--HPD- 149 (317)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCC---CHHHHHHHHHcCCEEEEeCCCHHHHHHHHHH-HHHh-cCCE-eeCCCC--ChH-
Confidence 99999999999999999999986 5789999999999999999999998777654 4443 2444 444433 333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCC
Q 017391 268 IMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFG 330 (372)
Q Consensus 268 ~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~ 330 (372)
..+||+++++||++|+. .+|+||+|+|+||+++|++.+++ ..|.+|||||||++++
T Consensus 150 --~~~g~~t~a~Ei~~q~~-----~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~ 206 (317)
T TIGR02991 150 --IVAGQGTLGLEVVEQMP-----DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGA 206 (317)
T ss_pred --HHhhHHHHHHHHHHhCC-----CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCch
Confidence 24699999999999863 37999999999999999999998 5789999999998764
No 40
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2.4e-37 Score=302.86 Aligned_cols=198 Identities=20% Similarity=0.228 Sum_probs=164.0
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
+.++++.++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.+.++...|+++|+||||.
T Consensus 13 ~a~~~i~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~ 85 (321)
T PRK07048 13 AAAARLAGVAH-RTPVLTSRTADART------GAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRRAGVVTFSSGNHAQ 85 (321)
T ss_pred HHHHHhhCCCC-CCCCccchhhHHhc------CCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhcCCcEEEeCCCHHHH
Confidence 45677788885 89999999998875 679999999999999999999999988666433333355678999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHH
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIM 269 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~l 269 (372)
|+|++|+.+|++|+|+||+.. ++.|+.+|+.+||+|+.++++++++.+.+ +++.++ .+.+| +.+++ |+.+
T Consensus 86 alA~~a~~~G~~~~vvvp~~~---~~~k~~~~~~~GAeV~~~~~~~~~~~~~a-~~l~~~-~g~~~-~~~~~--~~~~-- 155 (321)
T PRK07048 86 AIALSARLLGIPATIVMPQDA---PAAKVAATRGYGGEVVTYDRYTEDREEIG-RRLAEE-RGLTL-IPPYD--HPHV-- 155 (321)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECCCHHHHHHHH-HHHHHh-cCCEE-ECCCC--Ccch--
Confidence 999999999999999999977 57899999999999999999888887665 445554 24444 44443 2322
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCC
Q 017391 270 VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFG 330 (372)
Q Consensus 270 v~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~ 330 (372)
++||++++.||++|+. .||+||+|+|+||+++|++.+++ .++.+|||||||++++
T Consensus 156 -~~g~~t~~~EI~~q~~-----~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~ 211 (321)
T PRK07048 156 -IAGQGTAAKELFEEVG-----PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGN 211 (321)
T ss_pred -hhccchHHHHHHhhcC-----CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCCh
Confidence 4599999999999862 48999999999999999999998 6889999999999985
No 41
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=4.6e-37 Score=305.80 Aligned_cols=238 Identities=18% Similarity=0.258 Sum_probs=177.2
Q ss_pred HHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC----CeEEEecCcchHH
Q 017391 113 TALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR----KSIVAATGAGQHG 188 (372)
Q Consensus 113 ~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~----~~~V~~aSsGN~G 188 (372)
+.+...++ +|||++++++++.+ +.+||+|+|++|||||||||++++++..+++.|. ...|+++|+||||
T Consensus 51 ~~v~~~ig-~TPl~~l~~l~~~~------g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G 123 (368)
T PLN02556 51 TDASQLIG-KTPLVYLNKVTEGC------GAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMG 123 (368)
T ss_pred hhHHHhcC-CCccEEcccccccc------CCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHH
Confidence 33445665 89999999988764 6799999999999999999999999999988864 1345568899999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch--hHHHHHHHHHHHhccCCcEEEeccccCCCCh
Q 017391 189 VATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVGNLEKSYYLTGTVVGPHPC 266 (372)
Q Consensus 189 ~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~--~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 266 (372)
+|+|++|+.+|++|+|+||+.. +++|+.+|+.+||+|+.++... ..+++++.+ ++++..+ +|.++++. ||.
T Consensus 124 ~alA~~a~~~G~~~~ivvp~~~---~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~-l~~~~~~-~~~~~q~~--np~ 196 (368)
T PLN02556 124 ISLAFMAAMKGYKMILTMPSYT---SLERRVTMRAFGAELVLTDPTKGMGGTVKKAYE-LLESTPD-AFMLQQFS--NPA 196 (368)
T ss_pred HHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEECCCCCccHHHHHHHH-HHHhcCC-CCccCCCC--CHH
Confidence 9999999999999999999987 6899999999999999997532 355555544 3333233 34455543 444
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCCC-ccccccccCCC
Q 017391 267 PIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLDS-GKHAATLAKGE 344 (372)
Q Consensus 267 ~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~~-~~~a~~l~~G~ 344 (372)
+. ..|+.+++.||++|+ +..+|+||+|+|+||+++|++.+++ .++++|||||||+++.... +........|.
T Consensus 197 ~~--~~g~~ttg~EI~eq~----~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~ 270 (368)
T PLN02556 197 NT--QVHFETTGPEIWEDT----LGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGN 270 (368)
T ss_pred HH--HHHHHHHHHHHHHhc----CCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeec
Confidence 32 249999999999884 2358999999999999999999998 5789999999999985432 22222222232
Q ss_pred -ceeecCcceeeeeCCCCccccccccc
Q 017391 345 -VGVYHGAMSYLLQDEEGQILGTHSVG 370 (372)
Q Consensus 345 -~gv~~g~~~~~l~d~~~~~~~~~si~ 370 (372)
.+..+....+-..|+..++.|..+++
T Consensus 271 g~~~~p~~~~~~~~d~~v~Vsd~ea~~ 297 (368)
T PLN02556 271 GVGFKPDILDMDVMEKVLEVSSEDAVN 297 (368)
T ss_pred cCCCCccccchhhCCeEEEECHHHHHH
Confidence 12223444445566666666665554
No 42
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.1e-37 Score=304.68 Aligned_cols=192 Identities=23% Similarity=0.296 Sum_probs=158.7
Q ss_pred CCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC--CeEEEecCcchHHHHHHHHHHHcC
Q 017391 122 ETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR--KSIVAATGAGQHGVATAAACAKLA 199 (372)
Q Consensus 122 ~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~--~~~V~~aSsGN~G~AvA~aa~~~G 199 (372)
+|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.++|. ...|+++|+||||.|+|++|+.+|
T Consensus 1 ~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G 74 (316)
T cd06448 1 KTPLIESTALSKTA------GCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLG 74 (316)
T ss_pred CCCccccchhhHhh------CCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcC
Confidence 59999999999876 6799999999999999999999999998888883 344555789999999999999999
Q ss_pred CcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc-hhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHH
Q 017391 200 LDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC-FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIG 278 (372)
Q Consensus 200 i~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~-~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g 278 (372)
++|+||||+.. ++.|+++|+.+||+|+.++++ ++++.+.+ +.+.++.++.+|+ .+++ ||+. .+|+.+++
T Consensus 75 ~~~~iv~p~~~---~~~k~~~l~~~GA~v~~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~~~~--n~~~---~~g~~t~~ 144 (316)
T cd06448 75 VPCTIVVPEST---KPRVVEKLRDEGATVVVHGKVWWEADNYLR-EELAENDPGPVYV-HPFD--DPLI---WEGHSSMV 144 (316)
T ss_pred CCEEEEECCCC---CHHHHHHHHHcCCEEEEECCchHHHHHHHH-HHHHhccCCcEEe-CCCC--Cchh---hccccHHH
Confidence 99999999986 678999999999999999987 66665544 3444442244554 4443 4443 45889999
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CC-CCcEEEEEecCCCCC
Q 017391 279 KETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-ND-EDVRLIGVEAAGFGL 331 (372)
Q Consensus 279 ~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~-~~vrvigVe~~gs~~ 331 (372)
+||++|+... ..||+||+|+|+||+++|++.+|+ .+ ++++||||||++|+.
T Consensus 145 ~Ei~~q~~~~--~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~ 197 (316)
T cd06448 145 DEIAQQLQSQ--EKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHS 197 (316)
T ss_pred HHHHHHcccc--CCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChH
Confidence 9999997421 248999999999999999999998 44 889999999999854
No 43
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=5.5e-37 Score=308.06 Aligned_cols=237 Identities=21% Similarity=0.248 Sum_probs=174.9
Q ss_pred hhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC---CeEEEecCcchHHHHH
Q 017391 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR---KSIVAATGAGQHGVAT 191 (372)
Q Consensus 115 i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~---~~~V~~aSsGN~G~Av 191 (372)
+.+.++ +|||+++++|+... +.+||+|+|++|||||||||+|++++..|.+.|. ..+|+++||||||.|+
T Consensus 47 ~~~~ig-~TPLv~~~~l~~~~------g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~al 119 (423)
T PLN02356 47 LIDAIG-NTPLIRINSLSEAT------GCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISL 119 (423)
T ss_pred HHhhcC-CCceEECccccccc------CCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHH
Confidence 445665 89999999998875 6799999999999999999999999998888764 3577778999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC-------ch-hHHHH---HHHHHHHhcc----------
Q 017391 192 AAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG-------CF-KEASS---EAIRNWVGNL---------- 250 (372)
Q Consensus 192 A~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~-------~~-~da~~---~a~~~~~~~~---------- 250 (372)
|++|+.+|++|+||||+.. +++|+++|+.+||+|+.+++ ++ ..+.. ++. +++++.
T Consensus 120 A~~aa~~G~~~~ivvP~~~---s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~-e~a~~~~~~~~~~~~~ 195 (423)
T PLN02356 120 ATVAPAYGCKCHVVIPDDV---AIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEAN-ELASKRRKGSETDGIH 195 (423)
T ss_pred HHHHHHcCCcEEEEECCCC---cHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHH-HHHHHhhhcccccccc
Confidence 9999999999999999987 68999999999999999854 12 11111 111 112110
Q ss_pred ---------------------CCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhh
Q 017391 251 ---------------------EKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGL 309 (372)
Q Consensus 251 ---------------------~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi 309 (372)
....|++++++++++++ ..+|+| |.||++|+ +..+|+||+|+|+||+++|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~---ahg~gT-g~EI~eQl----~g~~D~vVv~vGtGGti~Gv 267 (423)
T PLN02356 196 LEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFR---AHYEGT-GPEIWEQT----QGNLDAFVAAAGTGGTLAGV 267 (423)
T ss_pred ccccccccccccccccccccCCCCcEecCccCCcchHH---HHHhhH-HHHHHHhc----CCCCCEEEeCCCchHHHHHH
Confidence 02345567776555443 237776 99999886 33589999999999999999
Q ss_pred hhhhc-CCCCcEEEEEecCCCCCCCcc------------------ccccccCCC-ceeecCcceeeeeCCCCcccccccc
Q 017391 310 FHEFI-NDEDVRLIGVEAAGFGLDSGK------------------HAATLAKGE-VGVYHGAMSYLLQDEEGQILGTHSV 369 (372)
Q Consensus 310 ~~~~~-~~~~vrvigVe~~gs~~~~~~------------------~a~~l~~G~-~gv~~g~~~~~l~d~~~~~~~~~si 369 (372)
+.+++ .+|++|||+|||.++.+.... ..+++..|. .+..+......+.|+...+.|..++
T Consensus 268 a~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~ 347 (423)
T PLN02356 268 SRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAV 347 (423)
T ss_pred HHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHH
Confidence 99999 689999999999998754321 113455554 2223333333446666666655544
Q ss_pred c
Q 017391 370 G 370 (372)
Q Consensus 370 ~ 370 (372)
.
T Consensus 348 ~ 348 (423)
T PLN02356 348 E 348 (423)
T ss_pred H
Confidence 3
No 44
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.1e-36 Score=305.49 Aligned_cols=200 Identities=17% Similarity=0.137 Sum_probs=158.6
Q ss_pred CCCCEEEccccchhhhcc--CCCCCeeEEeecCCCc-CcchhhHHHHHHHHH-----HHHcCC-----------------
Q 017391 121 RETPLYFAERLTDHYRNE--KGEGPEIYLKREDLNH-VGAHKINNAIGQAMI-----AKRMGR----------------- 175 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~--~~~~~~IylK~E~~~p-TGSfKdRga~~~~~~-----a~~~g~----------------- 175 (372)
.+|||+++++|++.++.. ...+.+||+|+|++|| |||||||++++++.. +++.|.
T Consensus 51 ~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~ 130 (404)
T cd06447 51 IESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRK 130 (404)
T ss_pred cCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhh
Confidence 589999999999875100 0003699999999999 999999999888753 545554
Q ss_pred ---CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCC
Q 017391 176 ---KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEK 252 (372)
Q Consensus 176 ---~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~ 252 (372)
...|+++||||||.|+|++|+.+|++|+||||++. +++|+++|+.+||+|+.++++++++.+.+.+ ++++..+
T Consensus 131 ~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~---~~~K~~~ira~GAeVv~v~~~~~~a~~~a~~-la~~~~~ 206 (404)
T cd06447 131 LFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADA---KQWKKDKLRSKGVTVVEYETDYSKAVEEGRK-QAAADPM 206 (404)
T ss_pred cccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---cHHHHHHHHHCCCEEEEECCCHHHHHHHHHH-HHHHCCC
Confidence 23567789999999999999999999999999987 6899999999999999999999999877755 4443223
Q ss_pred cEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHH---hC-CCCCEEEEcCCchhHHHhhhhhhcC--CCCcEEEEEec
Q 017391 253 SYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEK---WG-GKPDVLLACVGSGSNALGLFHEFIN--DEDVRLIGVEA 326 (372)
Q Consensus 253 ~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~---~g-~~pd~vvvpvG~GG~laGi~~~~~~--~~~vrvigVe~ 326 (372)
.|++++.+ +++ +.+||+|++.||++|+.+. .+ ..||+||+|+|+||+++|++.+|+. .+.++||+|||
T Consensus 207 -~~~v~~~n--~~~---~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP 280 (404)
T cd06447 207 -CYFVDDEN--SRD---LFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEP 280 (404)
T ss_pred -eEeCCCCC--chh---HHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 34444422 222 3579999999999998531 11 1367899999999999999999983 67899999999
Q ss_pred CCCC
Q 017391 327 AGFG 330 (372)
Q Consensus 327 ~gs~ 330 (372)
++++
T Consensus 281 ~~ap 284 (404)
T cd06447 281 THSP 284 (404)
T ss_pred CCCh
Confidence 9975
No 45
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.1e-36 Score=298.63 Aligned_cols=232 Identities=22% Similarity=0.285 Sum_probs=174.0
Q ss_pred ccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC----CeEEEecCcchHHHHHHH
Q 017391 118 YVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR----KSIVAATGAGQHGVATAA 193 (372)
Q Consensus 118 ~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~----~~~V~~aSsGN~G~AvA~ 193 (372)
.++ +|||++++++++.. +.+||+|+|++|||||||||++.+++..+++.|+ ...|+++|+||||+|+|+
T Consensus 14 ~~g-~TPl~~l~~l~~~~------g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~ 86 (323)
T PLN00011 14 LIG-NTPMVYLNNIVDGC------VARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLAC 86 (323)
T ss_pred HhC-CCceEEccccCCCC------CceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHH
Confidence 454 89999999987643 4799999999999999999999999999998884 234456889999999999
Q ss_pred HHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchh--HHHHHHHHHHHhccCCcEEEeccccCCCChhHHHH
Q 017391 194 ACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK--EASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVR 271 (372)
Q Consensus 194 aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~--da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~ 271 (372)
+|+.+|++|+||||+.. ++.|+++|+.+||+|+.++.+++ ++.+.+ +++.++. ..+|++.+++++ .+..
T Consensus 87 ~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a-~~l~~~~-~~~~~~~~~~n~--~n~~-- 157 (323)
T PLN00011 87 IGAARGYKVILVMPSTM---SLERRIILRALGAEVHLTDQSIGLKGMLEKA-EEILSKT-PGGYIPQQFENP--ANPE-- 157 (323)
T ss_pred HHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEECCCcChHHHHHHH-HHHHHhC-CCeEEeccccCC--ccHH--
Confidence 99999999999999986 57899999999999999987543 344454 3344432 235666776533 2211
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCC-CccccccccCCCc-eee
Q 017391 272 EFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLD-SGKHAATLAKGEV-GVY 348 (372)
Q Consensus 272 ~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~-~~~~a~~l~~G~~-gv~ 348 (372)
.++.+++.||++|+ +..||+||+|+|+||+++|++.+++ ..+++|||||||.++... .+....++..|.. +..
T Consensus 158 ~~~~t~~~EI~~q~----~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~ 233 (323)
T PLN00011 158 IHYRTTGPEIWRDS----AGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGII 233 (323)
T ss_pred HHHHHHHHHHHHhc----CCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCC
Confidence 27899999999886 2258999999999999999999998 578999999999998653 3333444444532 222
Q ss_pred cCcceeeeeCCCCcccccccc
Q 017391 349 HGAMSYLLQDEEGQILGTHSV 369 (372)
Q Consensus 349 ~g~~~~~l~d~~~~~~~~~si 369 (372)
+-....-+.|+.-++.|..++
T Consensus 234 ~~~~~~~~~d~~v~V~d~e~~ 254 (323)
T PLN00011 234 PFNLDLTIVDEIIQVTGEEAI 254 (323)
T ss_pred CcccChhhCCeEEEECHHHHH
Confidence 333333345555555555444
No 46
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=3.3e-36 Score=303.87 Aligned_cols=209 Identities=39% Similarity=0.547 Sum_probs=168.4
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
++++.+. .++++|||+++++|++.++ ...+||+|+|++|||||||+|+++.++..+++.|.+++|+++|+||||.
T Consensus 57 ~v~~~~~-l~g~pTPL~r~~~L~~~lg----~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~~~~vtetssGN~G~ 131 (419)
T TIGR01415 57 EVLKRYA-QIGRPTPLIRAKGLEELLG----TPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETGAGQWGS 131 (419)
T ss_pred HHHHHHH-hcCCCCCeEEccchhhhhC----CCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCCCeEEEecCchHHHH
Confidence 4444433 4557999999999998872 1369999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHH------------------HHHHHHHHHhccC
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEA------------------SSEAIRNWVGNLE 251 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da------------------~~~a~~~~~~~~~ 251 (372)
|+|++|+.+|++|+||||+......+.|+.+|+.+||+|+.++++++++ +.++.+...++ .
T Consensus 132 alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~-~ 210 (419)
T TIGR01415 132 ALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSD-E 210 (419)
T ss_pred HHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhC-C
Confidence 9999999999999999998654445678899999999999999887665 33444443332 3
Q ss_pred CcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc----C-CCCcEEEEEec
Q 017391 252 KSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI----N-DEDVRLIGVEA 326 (372)
Q Consensus 252 ~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~----~-~~~vrvigVe~ 326 (372)
+..|++++.. |+ +..||.++|+|+++|+.. .+..||+||+|+|+|||++|++.+|+ . .+++|||+|||
T Consensus 211 ~~~y~~~~~~--n~----~~~h~~~ig~Ei~~Ql~~-~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep 283 (419)
T TIGR01415 211 DTKYSLGSVL--NH----VLLHQTVIGLEAKKQMEE-AGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEP 283 (419)
T ss_pred CCEEEeCCCC--cH----HHHHHHHHHHHHHHHHHh-cCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEee
Confidence 4567766643 21 234999999999999853 34469999999999999999998773 1 35899999999
Q ss_pred CCCCC
Q 017391 327 AGFGL 331 (372)
Q Consensus 327 ~gs~~ 331 (372)
++|+.
T Consensus 284 ~~~~~ 288 (419)
T TIGR01415 284 KACPT 288 (419)
T ss_pred CCChh
Confidence 99864
No 47
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.6e-36 Score=296.68 Aligned_cols=200 Identities=27% Similarity=0.334 Sum_probs=164.9
Q ss_pred HHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHH
Q 017391 111 LSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVA 190 (372)
Q Consensus 111 l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~A 190 (372)
|...-+..++ +|||+++++|++.+ +..+||+|+|++|||||||||++.+++..|++.|.+++|+ +|+||||.|
T Consensus 5 ~~~~~~~~~g-~TPL~~~~~l~~~~-----G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~lv~-aSsGN~g~a 77 (319)
T PRK06381 5 LSSSEEKPPG-GTPLLRARKLEEEL-----GLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGITV-GTCGNYGAS 77 (319)
T ss_pred hhccccccCC-CCceeEhHhhHHhc-----CCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCCCEEEE-eCCcHHHHH
Confidence 3333344675 89999999999887 2369999999999999999999999999999999877665 689999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHH
Q 017391 191 TAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMV 270 (372)
Q Consensus 191 vA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv 270 (372)
+|++|+.+|++|+||||... ++.|+++|+.+||+|+.++++++++.+.+.+. .++ .+ +|.++... .|+ ...
T Consensus 78 lA~~aa~~G~~~~ivvp~~~---~~~~~~~l~~~GA~V~~~~~~~~~~~~~a~~~-~~~-~~-~~~~~~~~-~n~--~~~ 148 (319)
T PRK06381 78 IAYFARLYGLKAVIFIPRSY---SNSRVKEMEKYGAEIIYVDGKYEEAVERSRKF-AKE-NG-IYDANPGS-VNS--VVD 148 (319)
T ss_pred HHHHHHHcCCcEEEEECCCC---CHHHHHHHHHcCCEEEEcCCCHHHHHHHHHHH-HHH-cC-cEecCCCC-CCc--chH
Confidence 99999999999999999976 57899999999999999999999988777654 333 23 44433321 122 123
Q ss_pred HhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC-------CCCcEEEEEecCCCC
Q 017391 271 REFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-------DEDVRLIGVEAAGFG 330 (372)
Q Consensus 271 ~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~-------~~~vrvigVe~~gs~ 330 (372)
++||.+++.||++|+. ..||+||+|+|+||+++|++.+|+. ++.+|||+||+.+++
T Consensus 149 ~~G~~t~a~Ei~~ql~----~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~ 211 (319)
T PRK06381 149 IEAYSAIAYEIYEALG----DVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGN 211 (319)
T ss_pred hhhHHHHHHHHHHHhC----CCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCC
Confidence 4699999999999973 3589999999999999999999983 688999999999874
No 48
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=2e-37 Score=312.28 Aligned_cols=199 Identities=23% Similarity=0.274 Sum_probs=165.6
Q ss_pred HHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHc-CCCeEEEecCcchH
Q 017391 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRM-GRKSIVAATGAGQH 187 (372)
Q Consensus 109 ~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~-g~~~~V~~aSsGN~ 187 (372)
++.++.+.+.++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.+. +... |+++|+|||
T Consensus 11 ~~a~~~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~-vv~aSsGN~ 82 (403)
T PRK07334 11 RAAAARLAGQVL-RTPCVHSRTLSQIT------GAEVWLKFENLQFTASFKERGALNKLLLLTEEERARG-VIAMSAGNH 82 (403)
T ss_pred HHHHHHHhCCCC-CCCccchHHHHHhh------CCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHhCCc-EEEECCcHH
Confidence 345667778885 99999999999877 67999999999999999999999998764432 3334 555789999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChh
Q 017391 188 GVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCP 267 (372)
Q Consensus 188 G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 267 (372)
|.|+|++|+.+|++|+||||++. ++.|+.+|+.+||+|+.++++++++.+.+.+ ++++ .+.+| +.+++ ||.
T Consensus 83 g~alA~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~v~~~~~~~~~~~~~a~~-l~~~-~~~~~-~~~~~--~~~- 153 (403)
T PRK07334 83 AQGVAYHAQRLGIPATIVMPRFT---PTVKVERTRGFGAEVVLHGETLDEARAHARE-LAEE-EGLTF-VHPYD--DPA- 153 (403)
T ss_pred HHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEECcCHHHHHHHHHH-HHHh-cCCEe-cCCCC--CHH-
Confidence 99999999999999999999987 5789999999999999999999998877754 4544 34444 44443 333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 268 IMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 268 ~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
..+||.+++.|+++|+. .+|+||+|+|+||+++|++.+++ .++.+|||||||++++.
T Consensus 154 --~~~g~~t~~~Ei~~q~~-----~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~ 211 (403)
T PRK07334 154 --VIAGQGTVALEMLEDAP-----DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPS 211 (403)
T ss_pred --HHHhHHHHHHHHHhcCC-----CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCch
Confidence 34699999999998862 48999999999999999999998 68899999999999864
No 49
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=9.1e-37 Score=295.72 Aligned_cols=199 Identities=27% Similarity=0.321 Sum_probs=166.9
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
+.++.+.++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+++.+....|+++|+||||.
T Consensus 6 ~~~~~i~~~ig-~TPl~~~~~l~~~~------g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~ 78 (304)
T cd01562 6 AAAARIKPVVR-RTPLLTSPTLSELL------GAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQ 78 (304)
T ss_pred HHHHHHhCcCC-CCCcccchhhHHHh------CCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhcCCcEEEECCCHHHH
Confidence 34566677885 99999999999886 679999999999999999999999988777766434455578999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHH
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIM 269 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~l 269 (372)
|+|++|+.+|++|+||||++. +++|+++|+.+||+|+.++++++++++.+.+ ++++ .+.+ .++++++ ++.
T Consensus 79 alA~~a~~~G~~~~ivvp~~~---~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~-la~~-~~~~-~~~~~~n--~~~-- 148 (304)
T cd01562 79 GVAYAAKLLGIPATIVMPETA---PAAKVDATRAYGAEVVLYGEDFDEAEAKARE-LAEE-EGLT-FIHPFDD--PDV-- 148 (304)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCCCHHHHHHHHHH-HHHh-cCCE-EeCCCCC--cch--
Confidence 999999999999999999987 5789999999999999999999999877754 4444 2444 4566653 332
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 270 VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 270 v~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
.+++.+++.|+++|+. .||+||+|+|+||+++|++.+++ ..+.+|||+||+.+++.
T Consensus 149 -~~g~~~~~~Ei~~q~~-----~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~ 205 (304)
T cd01562 149 -IAGQGTIGLEILEQVP-----DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPA 205 (304)
T ss_pred -hccHHHHHHHHHHhcC-----CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCch
Confidence 3588999999999873 28999999999999999999998 57889999999998854
No 50
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=3e-36 Score=304.63 Aligned_cols=209 Identities=38% Similarity=0.537 Sum_probs=168.7
Q ss_pred HHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHH
Q 017391 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHG 188 (372)
Q Consensus 109 ~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G 188 (372)
++..++. ..+ ++|||+++++|++.++ .+.+||+|+|++|||||||+|++..++..+++.|..++|+++|+||||
T Consensus 66 ~~v~~~~-~~~-~~TPL~~~~~L~~~lg----~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~~~~vtetgsGN~G 139 (427)
T PRK12391 66 EEVREIY-RLW-RPTPLIRARRLEKALG----TPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGIKRLTTETGAGQWG 139 (427)
T ss_pred HHHHHHH-ccc-CCCCeeEchhhHhhhC----CCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCCCEEEEccCchHHH
Confidence 4555555 333 6999999999998872 136999999999999999999999999999999998888888899999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhH------------------HHHHHHHHHHhcc
Q 017391 189 VATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKE------------------ASSEAIRNWVGNL 250 (372)
Q Consensus 189 ~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~d------------------a~~~a~~~~~~~~ 250 (372)
.|+|++|+.+|++|+||||+......+.|+.+|+.+||+|+.+++++++ ++.++.+...++
T Consensus 140 ~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~- 218 (427)
T PRK12391 140 SALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKR- 218 (427)
T ss_pred HHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhC-
Confidence 9999999999999999999855444567889999999999999876554 345555544432
Q ss_pred CCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc----CC-CCcEEEEEe
Q 017391 251 EKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI----ND-EDVRLIGVE 325 (372)
Q Consensus 251 ~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~----~~-~~vrvigVe 325 (372)
.+.+|.+++.. + . +..||.++|.|+.+|+.+ .|..||+||+|+|+|||++|++.+|. .+ +.+||||||
T Consensus 219 ~~~~y~~~s~~--~--~--~~~~~~~ig~Ei~~Ql~~-~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVE 291 (427)
T PRK12391 219 PDTKYALGSVL--N--H--VLLHQTVIGLEAKKQLEL-AGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVE 291 (427)
T ss_pred CCcEEEcCCCC--c--H--HHhhHHHHHHHHHHHHHh-cCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 34567665421 2 1 235999999999999853 45569999999999999999998773 24 789999999
Q ss_pred cCCCCC
Q 017391 326 AAGFGL 331 (372)
Q Consensus 326 ~~gs~~ 331 (372)
|++|+.
T Consensus 292 p~~~~~ 297 (427)
T PRK12391 292 PAACPT 297 (427)
T ss_pred eccchh
Confidence 999864
No 51
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=297.53 Aligned_cols=199 Identities=27% Similarity=0.318 Sum_probs=163.6
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
+.++.+.+.++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.+..+...|+++|+||||.
T Consensus 9 ~a~~~~~~~i~-~TPLv~~~~l~~~~------g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~~~~vv~aSsGN~g~ 81 (317)
T PRK06815 9 EAHQRLRPQVR-VTPLEHSPLLSQHT------GCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASSGNHGQ 81 (317)
T ss_pred HHHHHhhCCCC-CCCccccHhHHHhh------CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhcCceEEEECCChHHH
Confidence 45677778884 99999999999876 679999999999999999999998887543322223345578999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHH
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIM 269 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~l 269 (372)
|+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++++++++...+.+ +.++ .+.+|+ .+++ |+.
T Consensus 82 alA~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~-~~~~-~~~~~~-~~~~--~~~--- 150 (317)
T PRK06815 82 GVALAAKLAGIPVTVYAPEQA---SAIKLDAIRALGAEVRLYGGDALNAELAARR-AAEQ-QGKVYI-SPYN--DPQ--- 150 (317)
T ss_pred HHHHHHHHhCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECCCHHHHHHHHHH-HHHh-cCCEEe-cCCC--Chh---
Confidence 999999999999999999986 5789999999999999999999888776644 4443 244443 4443 232
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 270 VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 270 v~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
.++||++++.||++|+. .||+||+|+|+||+++|++.+++ .++.+|||||||++++.
T Consensus 151 ~~~g~~t~a~Ei~~q~~-----~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~ 208 (317)
T PRK06815 151 VIAGQGTIGMELVEQQP-----DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPS 208 (317)
T ss_pred hhcchhHHHHHHHHhcC-----CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCc
Confidence 24699999999999873 38999999999999999999998 67899999999999864
No 52
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=3.7e-36 Score=296.46 Aligned_cols=197 Identities=22% Similarity=0.307 Sum_probs=163.3
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCC-eEEEecCcchHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRK-SIVAATGAGQHG 188 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~-~~V~~aSsGN~G 188 (372)
+.++.+.+.++ +|||+++++|++.+ |.+||+|+|++|||||||||++.+++..+++.|+. ..|+++|+||||
T Consensus 12 ~A~~~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g 84 (338)
T PRK06608 12 AAHNRIKQYLH-LTPIVHSESLNEML------GHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHG 84 (338)
T ss_pred HHHHHHhCcCc-CCCccchHhHHHHh------CCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHH
Confidence 34556677784 89999999999987 67999999999999999999999999999888872 445567899999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhH
Q 017391 189 VATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPI 268 (372)
Q Consensus 189 ~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 268 (372)
.|+|++|+.+|++|+|+||+.. +++|+++|+.+||+|+.++. .+++.+.+.+ .++ .+.+| +.+++ |++
T Consensus 85 ~alA~~a~~~G~~~~vv~p~~~---~~~k~~~l~~~GA~V~~~~~-~~~~~~~a~~--~~~-~~~~~-~~~~~--~~~-- 152 (338)
T PRK06608 85 QAVAYASKLFGIKTRIYLPLNT---SKVKQQAALYYGGEVILTNT-RQEAEEKAKE--DEE-QGFYY-IHPSD--SDS-- 152 (338)
T ss_pred HHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC-HHHHHHHHHH--HHh-CCCEE-cCCCC--CHH--
Confidence 9999999999999999999987 67899999999999999975 5677666644 332 34444 44432 222
Q ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCC
Q 017391 269 MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFG 330 (372)
Q Consensus 269 lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~ 330 (372)
.++|+++++.|+++|+ +..||+||+|+|+||+++|++.+++ .++.+|||||||.+++
T Consensus 153 -~~~g~~t~a~Ei~~q~----~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~ 210 (338)
T PRK06608 153 -TIAGAGTLCYEALQQL----GFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNAN 210 (338)
T ss_pred -HhccHHHHHHHHHHhc----CCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCCh
Confidence 2468999999999886 3358999999999999999999987 6789999999999985
No 53
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=5.4e-36 Score=292.16 Aligned_cols=194 Identities=26% Similarity=0.326 Sum_probs=159.5
Q ss_pred HHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHH
Q 017391 110 ELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189 (372)
Q Consensus 110 ~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~ 189 (372)
+.++.+.+.++ +|||+++++++.. +.+||+|+|++|||||||||++++++..+.+ +.+. |+++|+||||.
T Consensus 12 ~a~~~i~~~i~-~TPl~~~~~l~~~-------~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~~~~-vv~aSsGN~g~ 81 (310)
T PRK08246 12 AAAQRIAPHIR-RTPVLEADGAGFG-------PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-PAAG-VVAASGGNAGL 81 (310)
T ss_pred HHHHHHhCcCC-CCCeeeccccccC-------CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-cCCe-EEEeCCCHHHH
Confidence 34566677784 8999999988642 5799999999999999999999998876655 4444 44578999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHH
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIM 269 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~l 269 (372)
|+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++++++++.+.+.+ ++++ .+ +|.+++++ ||+
T Consensus 82 a~A~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~-~~~~-~g-~~~~~~~~--n~~--- 150 (310)
T PRK08246 82 AVAYAAAALGVPATVFVPETA---PPAKVARLRALGAEVVVVGAEYADALEAAQA-FAAE-TG-ALLCHAYD--QPE--- 150 (310)
T ss_pred HHHHHHHHcCCCEEEEECCCC---cHHHHHHHHHCCCEEEEeCCCHHHHHHHHHH-HHHh-cC-CEeCCCCC--Chh---
Confidence 999999999999999999986 5789999999999999999999998877754 4443 23 44445543 343
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcCCCCcEEEEEecCCCCC
Q 017391 270 VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 270 v~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~~~~vrvigVe~~gs~~ 331 (372)
.++||+++++|+++|+. .||+||+|+|+||+++|++.+++ +.+|||+|||++++.
T Consensus 151 ~i~g~~t~~~Ei~eq~~-----~~D~iv~~vG~GG~~~Gi~~~~~--~~~~vi~ve~~~~~~ 205 (310)
T PRK08246 151 VLAGAGTLGLEIEEQAP-----GVDTVLVAVGGGGLIAGIAAWFE--GRARVVAVEPEGAPT 205 (310)
T ss_pred hhcchHHHHHHHHHhcC-----CCCEEEEecCccHHHHHHHHHhc--CCCEEEEEeeCCChH
Confidence 24699999999999962 48999999999999999999996 348999999999864
No 54
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=6.5e-36 Score=303.13 Aligned_cols=200 Identities=18% Similarity=0.180 Sum_probs=158.4
Q ss_pred CCCCEEEccccchhhhccCC--CCCeeEEeecCCCc-CcchhhHHHHHHHHH-----HHHcCC-----------------
Q 017391 121 RETPLYFAERLTDHYRNEKG--EGPEIYLKREDLNH-VGAHKINNAIGQAMI-----AKRMGR----------------- 175 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~--~~~~IylK~E~~~p-TGSfKdRga~~~~~~-----a~~~g~----------------- 175 (372)
.+|||++++.|++.++.+.+ .+.+||+|+|++|| |||||+|++++++.. +++.|.
T Consensus 74 ~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~ 153 (441)
T PRK02991 74 IESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQ 153 (441)
T ss_pred cCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhh
Confidence 58999999999887610000 01699999999999 999999999888763 344553
Q ss_pred ---CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCC
Q 017391 176 ---KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEK 252 (372)
Q Consensus 176 ---~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~ 252 (372)
...|+++|+||||.|+|++|+.+|++|+||||++. ++.|+++|+.+||+|+.++++++++.+.+.+ .+++..+
T Consensus 154 ~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a---~~~K~~~ir~~GAeVi~~~~~~~~a~~~A~~-la~~~~~ 229 (441)
T PRK02991 154 FFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADA---RQWKKDKLRSHGVTVVEYEGDYGVAVEEGRK-AAESDPN 229 (441)
T ss_pred hccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECCCHHHHHHHHHH-HHHhcCC
Confidence 12466689999999999999999999999999987 6899999999999999999999999888755 4443223
Q ss_pred cEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHH---hC-CCCCEEEEcCCchhHHHhhhhhhcC--CCCcEEEEEec
Q 017391 253 SYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEK---WG-GKPDVLLACVGSGSNALGLFHEFIN--DEDVRLIGVEA 326 (372)
Q Consensus 253 ~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~---~g-~~pd~vvvpvG~GG~laGi~~~~~~--~~~vrvigVe~ 326 (372)
. |..++.+ +++ +.+||+|++.||++|+... .+ +.||+||+|+|+||+++|++.+++. .+.+|||+|||
T Consensus 230 ~-~~~~~~~--~~~---~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp 303 (441)
T PRK02991 230 C-YFIDDEN--SRT---LFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEP 303 (441)
T ss_pred e-EeCCCCC--chh---HHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3 4444432 222 3579999999999998631 11 2478999999999999999999983 67899999999
Q ss_pred CCCC
Q 017391 327 AGFG 330 (372)
Q Consensus 327 ~gs~ 330 (372)
++++
T Consensus 304 ~ga~ 307 (441)
T PRK02991 304 THSP 307 (441)
T ss_pred CCCh
Confidence 9985
No 55
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=4.2e-36 Score=297.61 Aligned_cols=188 Identities=26% Similarity=0.343 Sum_probs=158.9
Q ss_pred CCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCC
Q 017391 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLAL 200 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi 200 (372)
.+|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.++|.+++| ++|+||||.|+|++|+.+|+
T Consensus 27 G~TPL~~~~~l~~~~------g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~~vV-~aSsGN~G~AlA~~aa~~G~ 99 (351)
T PRK06352 27 GNTPLIPLPNLSKEL------GVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAEAVI-CASTGNTSAAAAAYATRAGL 99 (351)
T ss_pred CCCCeeEcHhhHHHh------CCeEEEEecCCCCccChHHHHHHHHHHHHHHCCCCEEE-EECCcHHHHHHHHHHHHcCC
Confidence 489999999999876 57999999999999999999999999999988887655 56899999999999999999
Q ss_pred cEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHH
Q 017391 201 DCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 280 (372)
Q Consensus 201 ~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~E 280 (372)
+|+||||++.. ++.|+.+|+.+||+|+.++++++++.+.+.+ +.++ ..++..++ .||+. .+||.+++.|
T Consensus 100 ~~~ivvp~~~~--~~~k~~~~~a~GA~V~~~~~~~~~~~~~a~~-~~~~--~~~~~~~~---~n~~~---~~G~~t~~~E 168 (351)
T PRK06352 100 KAYIVIPEGKV--ALGKLAQAVMYGADIISIQGNFDEALKSVRE-LAET--EAVTLVNS---VNPYR---LEGQKTAAFE 168 (351)
T ss_pred cEEEEEeCCCC--cHHHHHHHHhcCCEEEEECCCHHHHHHHHHH-HHHh--cCcccccC---CCccc---eeeHHHHHHH
Confidence 99999999742 4788999999999999999999998877754 4443 22333332 25553 4599999999
Q ss_pred HHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCC-----cEEEEEecCCCC
Q 017391 281 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDED-----VRLIGVEAAGFG 330 (372)
Q Consensus 281 i~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~-----vrvigVe~~gs~ 330 (372)
|++|+ +..||+||+|+|+||+++|++.+|+ ..+. +|||+|||+++.
T Consensus 169 I~~Q~----~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~ 220 (351)
T PRK06352 169 ICEQL----GSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAA 220 (351)
T ss_pred HHHHc----CCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCC
Confidence 99986 3458999999999999999999998 3443 899999999985
No 56
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=8.7e-36 Score=301.79 Aligned_cols=191 Identities=24% Similarity=0.303 Sum_probs=162.4
Q ss_pred CCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCC
Q 017391 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLAL 200 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi 200 (372)
.+|||+++++|++.+ +..+||+|+|++|||||||||++...+..|++.|.+.+|+ +|+||||+|+|++|+++|+
T Consensus 88 G~TPLv~~~~l~~~l-----G~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~~~vv~-aSsGN~g~alA~~aa~~Gl 161 (421)
T PRK07591 88 GFTPLVKADRLAREL-----GLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGFTTVAC-ASTGNLANSVAAHAARAGL 161 (421)
T ss_pred CCCcceEhHHHHHHh-----CCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCCCEEEE-eCCCHHHHHHHHHHHHcCC
Confidence 479999999999887 2369999999999999999999999998899989877765 6899999999999999999
Q ss_pred cEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHH
Q 017391 201 DCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 280 (372)
Q Consensus 201 ~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~E 280 (372)
+|+||||++. ++.|+.+|+.+||+|+.++++++++.+.+.+ +.++.++ +|..++ +.+||+ ++||+++++|
T Consensus 162 ~~~I~vP~~~---~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~~-~~~~~~~-~~~~n~--~~~p~~---ieG~~Tia~E 231 (421)
T PRK07591 162 DSCVFIPADL---EAGKIVGTLVYGPTLVAVDGNYDDVNRLCSE-LANEHEG-WGFVNI--NLRPYY---AEGSKTLGYE 231 (421)
T ss_pred CEEEEEcCCC---CHHHHHHHHHcCCEEEEECCCHHHHHHHHHH-HHHhcCC-EEEecC--CCCccc---ccchHHHHHH
Confidence 9999999976 5789999999999999999999998877754 4444223 444443 246665 4699999999
Q ss_pred HHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC--------CCCcEEEEEecCCCC
Q 017391 281 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN--------DEDVRLIGVEAAGFG 330 (372)
Q Consensus 281 i~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~--------~~~vrvigVe~~gs~ 330 (372)
|++|+. +..||+||+|+|+||+++|++.+|+. ++.+|||+|||+++.
T Consensus 232 i~eQl~---~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~ 286 (421)
T PRK07591 232 VAEQLG---WRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCS 286 (421)
T ss_pred HHHHcC---CCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCC
Confidence 999973 13489999999999999999999973 578999999999974
No 57
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.7e-35 Score=297.77 Aligned_cols=207 Identities=18% Similarity=0.178 Sum_probs=162.4
Q ss_pred HHHHHh--hcccCCCCCEEEccccchhhhccCCCCCeeEEeecCC-CcCcchhhHHHHHHHHHHH--HcCCC--------
Q 017391 110 ELSTAL--RDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDL-NHVGAHKINNAIGQAMIAK--RMGRK-------- 176 (372)
Q Consensus 110 ~l~~~i--~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~-~pTGSfKdRga~~~~~~a~--~~g~~-------- 176 (372)
+.++++ .+.+ .+|||+++++|++.+ +..+||+|+|++ ||||||||||+.+.+..+. +.+.+
T Consensus 31 ~a~~~~~~~~~~-~~TPL~~~~~l~~~~-----G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~ 104 (399)
T PRK08206 31 KARAFHQSFPGY-APTPLVALPDLAAEL-----GVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEE 104 (399)
T ss_pred HHHHHHhcCCCC-CCCCCcchHHHHHHh-----CCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHH
Confidence 445566 4455 489999999999987 236999999998 5999999999877765443 23321
Q ss_pred ------------eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHH
Q 017391 177 ------------SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIR 244 (372)
Q Consensus 177 ------------~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~ 244 (372)
.+|+++|+||||.|+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++++++++...+.+
T Consensus 105 l~~~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~---~~~k~~~i~~~GA~Vi~v~~~~~~~~~~a~~ 181 (399)
T PRK08206 105 LTSGEVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGS---SEERVDAIRALGAECIITDGNYDDSVRLAAQ 181 (399)
T ss_pred hhhhHHHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCCCHHHHHHHHHH
Confidence 1466789999999999999999999999999987 5789999999999999999999999888765
Q ss_pred HHHhccCCcEEEec----cccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-C--CC
Q 017391 245 NWVGNLEKSYYLTG----TVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-N--DE 317 (372)
Q Consensus 245 ~~~~~~~~~~y~~~----s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~--~~ 317 (372)
. +++ .+.+|+.+ ++++. +..+++||.++++||++|+.+ .+..||+||+|+|+||+++|++.+++ . .+
T Consensus 182 ~-~~~-~g~~~v~~~~~~~~~~~---~~~~~~G~~t~a~EI~eQl~~-~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~ 255 (399)
T PRK08206 182 E-AQE-NGWVVVQDTAWEGYEEI---PTWIMQGYGTMADEAVEQLKE-MGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQ 255 (399)
T ss_pred H-HHH-cCCEEecCccccCcccc---cHHHHHHhHHHHHHHHHHHHh-cCCCCCEEEEcCCccHHHHHHHHHHHHHcCCC
Confidence 4 333 24444322 22211 123467999999999999853 22358999999999999999999997 3 35
Q ss_pred CcEEEEEecCCCCC
Q 017391 318 DVRLIGVEAAGFGL 331 (372)
Q Consensus 318 ~vrvigVe~~gs~~ 331 (372)
.+|||+|||+++..
T Consensus 256 ~~kii~Vep~gs~~ 269 (399)
T PRK08206 256 RPHFVVVEPDQADC 269 (399)
T ss_pred CCEEEEECCCCCch
Confidence 79999999999854
No 58
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=1.4e-35 Score=298.09 Aligned_cols=191 Identities=27% Similarity=0.342 Sum_probs=162.7
Q ss_pred CCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCC
Q 017391 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLAL 200 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi 200 (372)
.+|||+++++|++.+ +..+||+|+|++|||||||||++.+++..|.+.|.+++|+ +|+||||.|+|++|+.+|+
T Consensus 78 G~TPL~~~~~l~~~~-----G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~ 151 (394)
T PRK08197 78 GMTPLLPLPRLGKAL-----GIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVKHLAM-PTNGNAGAAWAAYAARAGI 151 (394)
T ss_pred CCCCceEhHHHHHHh-----CCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCC
Confidence 479999999999887 2369999999999999999999999999999889877665 6899999999999999999
Q ss_pred cEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHH
Q 017391 201 DCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 280 (372)
Q Consensus 201 ~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~E 280 (372)
+|+||||++. ++.|+.+|+.+||+|+.++++++++.+.+.+. .++ .+ +|..+++. ||++ ++|++++++|
T Consensus 152 ~~~v~vp~~~---~~~k~~~~~~~GA~Vi~v~~~~~~~~~~a~~~-~~~-~g-~~~~~~~~--np~~---ieG~~t~a~E 220 (394)
T PRK08197 152 RATIFMPADA---PEITRLECALAGAELYLVDGLISDAGKIVAEA-VAE-YG-WFDVSTLK--EPYR---IEGKKTMGLE 220 (394)
T ss_pred cEEEEEcCCC---CHHHHHHHHHcCCEEEEECCCHHHHHHHHHHH-HHh-cC-cccccCCC--Cccc---hhcHHHHHHH
Confidence 9999999987 57899999999999999999999988777553 343 23 45555543 5664 4699999999
Q ss_pred HHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC--------CCCcEEEEEecCCCCC
Q 017391 281 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN--------DEDVRLIGVEAAGFGL 331 (372)
Q Consensus 281 i~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~--------~~~vrvigVe~~gs~~ 331 (372)
|++|+.. ..||+||+|+|+||+++|++.+|+. ++.+|||+||++++..
T Consensus 221 i~eQl~~---~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~ 276 (394)
T PRK08197 221 LAEQLGW---RLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAP 276 (394)
T ss_pred HHHHcCC---CCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCH
Confidence 9999732 3489999999999999999999983 3789999999999854
No 59
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=1.6e-35 Score=302.17 Aligned_cols=199 Identities=22% Similarity=0.296 Sum_probs=160.7
Q ss_pred hhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC---CeEEEecCcchHHHHH
Q 017391 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR---KSIVAATGAGQHGVAT 191 (372)
Q Consensus 115 i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~---~~~V~~aSsGN~G~Av 191 (372)
+.+.++ +|||+++++|++.+ +.+||+|+|++|||||||+|+|.+++..+.+.|+ ...|+++|+||||.|+
T Consensus 5 ~~~~~~-~TPl~~~~~l~~~~------~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~al 77 (454)
T TIGR01137 5 IIDLIG-NTPLVRLNKVSKGI------KCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGL 77 (454)
T ss_pred hHHhcC-CCceEEccccCCCC------CceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHH
Confidence 345564 89999999998865 5799999999999999999999999999988886 1345567999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc--hhHH---HHHHHHHHHhccCCcEEEeccccCCCCh
Q 017391 192 AAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC--FKEA---SSEAIRNWVGNLEKSYYLTGTVVGPHPC 266 (372)
Q Consensus 192 A~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~--~~da---~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 266 (372)
|++|+.+|++|+||||++. +++|+.+++.+||+|+.+++. ++++ .+.+ +++.++..+ +++++++++ +.
T Consensus 78 A~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a-~~l~~~~~~-~~~~~~~~~--~~ 150 (454)
T TIGR01137 78 ALVAAIKGYKCIIVLPEKM---SNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVA-KRLVREIPG-AHILDQYNN--PS 150 (454)
T ss_pred HHHHHHcCCeEEEEeCCCc---CHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHH-HHHHHhCCC-cEecccCCC--hh
Confidence 9999999999999999976 578999999999999999864 4432 2233 334443233 455566543 22
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCCC
Q 017391 267 PIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLDS 333 (372)
Q Consensus 267 ~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~~ 333 (372)
. ...||.++|.||++|+. ..||+||+|+|+||+++|++.+++ ..+.+|||||||+++....
T Consensus 151 ~--~~~~~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~ 212 (454)
T TIGR01137 151 N--PLAHYDGTGPEILEQCE----GKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQ 212 (454)
T ss_pred h--HHHHHHhhHHHHHHHhC----CCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccC
Confidence 2 12489999999999873 248999999999999999999998 6789999999999987543
No 60
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=3.7e-35 Score=296.61 Aligned_cols=200 Identities=17% Similarity=0.145 Sum_probs=160.2
Q ss_pred CCCCEEEccccchhhhc--cCCCCCeeEEeecCCCc-CcchhhHHHHHHHHH-----HHHcCC-----------------
Q 017391 121 RETPLYFAERLTDHYRN--EKGEGPEIYLKREDLNH-VGAHKINNAIGQAMI-----AKRMGR----------------- 175 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~--~~~~~~~IylK~E~~~p-TGSfKdRga~~~~~~-----a~~~g~----------------- 175 (372)
.+|||++++++++.++. ....+.+||+|+|++|| |||||||++.+++.. +++.|.
T Consensus 69 ~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~ 148 (431)
T TIGR02035 69 IESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKD 148 (431)
T ss_pred cCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhh
Confidence 58999999999885410 00014699999999999 999999999998753 555565
Q ss_pred ---CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCC
Q 017391 176 ---KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEK 252 (372)
Q Consensus 176 ---~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~ 252 (372)
...|+++||||||.|+|++|+.+|++|+|+||++. ++.|+.+|+.+||+|+.++++++++.+.+.+ +.++...
T Consensus 149 ~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a---~~~K~~~ir~~GAeVv~~~~~~~~a~~~A~~-la~~~~~ 224 (431)
T TIGR02035 149 FFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADA---KQWKKDKLRSKGVTVVEYESDYGVAVEEGRK-NADADPM 224 (431)
T ss_pred cccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEECCCHHHHHHHHHH-HHHhcCC
Confidence 24566789999999999999999999999999987 6899999999999999999999999888865 4444333
Q ss_pred cEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHH---hC-CCCCEEEEcCCchhHHHhhhhhhc-C-CCCcEEEEEec
Q 017391 253 SYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEK---WG-GKPDVLLACVGSGSNALGLFHEFI-N-DEDVRLIGVEA 326 (372)
Q Consensus 253 ~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~---~g-~~pd~vvvpvG~GG~laGi~~~~~-~-~~~vrvigVe~ 326 (372)
.|..+.. |+.+ +++||++++.||++|+... .+ ..||+|++|+|+||+++|++.+++ . ++++|||+|||
T Consensus 225 -~~~~d~~---n~~n--~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp 298 (431)
T TIGR02035 225 -CYFVDDE---NSRN--LFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEP 298 (431)
T ss_pred -eEECCCC---Cccc--HHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 3444442 2222 2469999999999998531 11 247899999999999999999998 3 78899999999
Q ss_pred CCCC
Q 017391 327 AGFG 330 (372)
Q Consensus 327 ~gs~ 330 (372)
++++
T Consensus 299 ~~s~ 302 (431)
T TIGR02035 299 THSP 302 (431)
T ss_pred CCCH
Confidence 9985
No 61
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=3.7e-35 Score=291.06 Aligned_cols=188 Identities=25% Similarity=0.339 Sum_probs=158.0
Q ss_pred CCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCC
Q 017391 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLAL 200 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi 200 (372)
.+|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+++.|++++| ++||||||.|+|++|+.+|+
T Consensus 30 g~TPl~~~~~l~~~~------g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~~iv-~aSsGN~g~alA~~a~~~G~ 102 (353)
T PRK07409 30 GNTPLIPAPNLSELL------GVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAKAVI-CASTGNTSASAAAYAARAGL 102 (353)
T ss_pred CCCCEEEchhhHHHh------CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCCEEE-EECCcHHHHHHHHHHHHcCC
Confidence 489999999998876 67999999999999999999999999989888876655 56899999999999999999
Q ss_pred cEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHH
Q 017391 201 DCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 280 (372)
Q Consensus 201 ~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~E 280 (372)
+|+||||++.. ++.|+++|+.+||+|+.+++++++|.+.+.+ +.++. . ++..++ .||+. ++||.++++|
T Consensus 103 ~~~ivvP~~~~--~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~-l~~~~-~-~~~~~~---~n~~~---~~g~~t~~~E 171 (353)
T PRK07409 103 KAFVLIPEGKI--ALGKLAQAVMYGAEIIQIDGNFDDALEIVRE-LAEKY-P-VTLVNS---VNPYR---IEGQKTAAFE 171 (353)
T ss_pred CEEEEEcCCCC--chhhHHHHHhcCCEEEEECCCHHHHHHHHHH-HHHhc-C-ceecCC---CCchh---hhhHHHHHHH
Confidence 99999999743 4678889999999999999999999877754 44432 2 444333 35554 4599999999
Q ss_pred HHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC-------CCCcEEEEEecCCCC
Q 017391 281 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-------DEDVRLIGVEAAGFG 330 (372)
Q Consensus 281 i~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~-------~~~vrvigVe~~gs~ 330 (372)
|++|+ +..||+||+|+|+||+++|++.+++. .+.+|||+|||.++.
T Consensus 172 I~~q~----~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~ 224 (353)
T PRK07409 172 IVDAL----GDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAA 224 (353)
T ss_pred HHHHh----CCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCC
Confidence 99986 23589999999999999999998862 225999999999885
No 62
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=6.1e-35 Score=289.40 Aligned_cols=189 Identities=24% Similarity=0.331 Sum_probs=157.5
Q ss_pred CCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCC
Q 017391 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLAL 200 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi 200 (372)
.+|||+++++|++.+ +.+||+|+|++|||||||||++.+++..++++|.+++|+ +|+||||.|+|++|+.+|+
T Consensus 27 G~TPl~~l~~l~~~~------g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~~vV~-aSsGN~G~alA~~aa~~G~ 99 (352)
T PRK06721 27 GNTPLIPLLNISKQL------GIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGSEAIIC-ASTGNTSASAAAYAARLGM 99 (352)
T ss_pred CCCCeeEchhhHHHh------CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCCEEEE-ECCcHHHHHHHHHHHHCCC
Confidence 489999999999876 579999999999999999999999999999988766665 6899999999999999999
Q ss_pred cEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHH
Q 017391 201 DCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 280 (372)
Q Consensus 201 ~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~E 280 (372)
+|+|+||+... ++.|+++|+.+||+|+.++++++++.+.+.+ +.++. . ++..++ .||++ .+||.++++|
T Consensus 100 ~~~vvvp~~~~--~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~-~~~~~-~-~~~~~~---~n~~~---~~G~~t~~~E 168 (352)
T PRK06721 100 KCIIVIPEGKI--AHGKLAQAVAYGAEIISIEGNFDDALKAVRN-IAAEE-P-ITLVNS---VNPYR---IEGQKTAAFE 168 (352)
T ss_pred cEEEEECCCCC--CHHHHHHHHHcCCEEEEECCCHHHHHHHHHH-HHHhC-C-ceeccC---CCchh---hhhhhhHHHH
Confidence 99999998753 4678999999999999999999998877754 44432 3 344332 25554 4599999999
Q ss_pred HHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhh----c-C-CCCcEEEEEecCCCCC
Q 017391 281 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEF----I-N-DEDVRLIGVEAAGFGL 331 (372)
Q Consensus 281 i~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~----~-~-~~~vrvigVe~~gs~~ 331 (372)
+++|+. ..||+||+|+|+||+++|++.++ + . .+.+|||||||+++..
T Consensus 169 i~eq~~----~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~ 221 (352)
T PRK06721 169 ICDQLQ----RAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAA 221 (352)
T ss_pred HHHHhC----CCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCCh
Confidence 999973 35899999999999999876554 3 3 3889999999999853
No 63
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=5.1e-35 Score=294.31 Aligned_cols=191 Identities=27% Similarity=0.371 Sum_probs=161.0
Q ss_pred CCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCC
Q 017391 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLAL 200 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi 200 (372)
.+|||+++++|++.+ +..+||+|+|++|||||||||++...+..+++.|.+.+|+ +|+||||.|+|++|+.+|+
T Consensus 66 G~TPLv~~~~l~~~~-----g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~ 139 (397)
T PRK06260 66 GGTPLYRCPNLEKEL-----GVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVKTVAC-ASTGNTSASLAAYAARAGL 139 (397)
T ss_pred CCCCeEEchhhHHHh-----CCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCC
Confidence 479999999999877 2239999999999999999999999998898889876665 6899999999999999999
Q ss_pred cEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHH
Q 017391 201 DCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 280 (372)
Q Consensus 201 ~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~E 280 (372)
+|+||||++.. ++.|+.+++.+||+|+.++++++++.+.+.+ ++++ ..+|.+++. ||++ .+||+++++|
T Consensus 140 ~~~i~vP~~~~--~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~-~~~~--~g~y~~~~~---np~~---~~G~~t~a~E 208 (397)
T PRK06260 140 KCYVLLPAGKV--ALGKLAQALLHGAKVLEVDGNFDDALDMVVE-LAKE--GKIYLLNSI---NPFR---LEGQKTIGFE 208 (397)
T ss_pred cEEEEEeCCCc--cHHHHHHHHhcCCEEEEECCcHHHHHHHHHH-HHhh--CCEEeecCC---Cchh---hcchhhHHHH
Confidence 99999998733 5688999999999999999999999877754 4444 235665543 6665 4599999999
Q ss_pred HHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC-------CCCcEEEEEecCCCCC
Q 017391 281 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-------DEDVRLIGVEAAGFGL 331 (372)
Q Consensus 281 i~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~-------~~~vrvigVe~~gs~~ 331 (372)
+++|+. +..||+||+|+|+||+++|++.+|+. .+.+||||||++++..
T Consensus 209 i~eQl~---~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~ 263 (397)
T PRK06260 209 IADQLG---WEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAP 263 (397)
T ss_pred HHHHhC---CCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcH
Confidence 999973 12589999999999999999999972 2458999999999853
No 64
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=6.8e-35 Score=274.32 Aligned_cols=185 Identities=35% Similarity=0.488 Sum_probs=157.8
Q ss_pred CCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC--CeEEEecCcchHHHHHHHHHHHcCC
Q 017391 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR--KSIVAATGAGQHGVATAAACAKLAL 200 (372)
Q Consensus 123 TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~--~~~V~~aSsGN~G~AvA~aa~~~Gi 200 (372)
|||+++++|++.. +.+||+|+|++|||||||||++.+.+..+++.|+ ..+|+++|+||||.|+|++|+.+|+
T Consensus 1 TPl~~~~~l~~~~------~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~ 74 (244)
T cd00640 1 TPLVRLKRLSKLG------GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGL 74 (244)
T ss_pred CCeeEcccccccc------CCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence 8999999998753 6899999999999999999999999998988884 4556667889999999999999999
Q ss_pred cEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHH
Q 017391 201 DCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 280 (372)
Q Consensus 201 ~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~E 280 (372)
+|+|+||++. ++.|+++|+.+||+|+.++++++++.+.+.+ +.++..+.+| ++++ .|+++ ++||.+++.|
T Consensus 75 ~~~v~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~-~~~~~~~~~~-~~~~--~n~~~---~~g~~~~~~E 144 (244)
T cd00640 75 KCTIVMPEGA---SPEKVAQMRALGAEVVLVPGDFDDAIALAKE-LAEEDPGAYY-VNQF--DNPAN---IAGQGTIGLE 144 (244)
T ss_pred CEEEEECCCC---CHHHHHHHHHCCCEEEEECCCHHHHHHHHHH-HHHhCCCCEe-cCCC--CCHHH---HHHHHHHHHH
Confidence 9999999987 6789999999999999999999999877754 4444334444 4443 24443 4599999999
Q ss_pred HHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEec
Q 017391 281 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEA 326 (372)
Q Consensus 281 i~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~ 326 (372)
+++|+.+. .||+||+|+|+||+++|++.+++ ..+.+|||+||+
T Consensus 145 i~~q~~~~---~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 145 ILEQLGGQ---KPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred HHHHcCCC---CCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 99997531 58999999999999999999998 678999999999
No 65
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=5.1e-35 Score=286.46 Aligned_cols=189 Identities=29% Similarity=0.400 Sum_probs=159.4
Q ss_pred CCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCC
Q 017391 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLAL 200 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi 200 (372)
.+|||+++++|++.+ ++.+||+|+|++|||||||||++.+.+..+++.|.+++| ++|+||||.|+|++|+.+|+
T Consensus 21 g~TPl~~~~~l~~~~-----g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~vv-~~SsGN~g~alA~~a~~~G~ 94 (324)
T cd01563 21 GNTPLVRAPRLGERL-----GGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGVKAVA-CASTGNTSASLAAYAARAGI 94 (324)
T ss_pred CCCceeechhhHhhc-----CCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCCCEEE-EeCCCHHHHHHHHHHHHcCC
Confidence 489999999999876 347999999999999999999999999999888876655 56899999999999999999
Q ss_pred cEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHH
Q 017391 201 DCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 280 (372)
Q Consensus 201 ~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~E 280 (372)
+|+|+||++. ++.|+++|+.+||+|+.++++++++.+.+.+ +.++. .+|. .+++ |+.. .+||.+++.|
T Consensus 95 ~~~ivvp~~~---~~~k~~~l~~~GA~Vi~~~~~~~~~~~~a~~-~~~~~--~~~~-~~~~--n~~~---~~g~~t~~~E 162 (324)
T cd01563 95 KCVVFLPAGK---ALGKLAQALAYGATVLAVEGNFDDALRLVRE-LAEEN--WIYL-SNSL--NPYR---LEGQKTIAFE 162 (324)
T ss_pred ceEEEEeCCC---CHHHHHHHHHcCCEEEEECCcHHHHHHHHHH-HHHhc--Ceec-cCCC--Ccce---ecchhhhHHH
Confidence 9999999987 5789999999999999999999998876644 44432 4443 4433 4443 3499999999
Q ss_pred HHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC-------CCCcEEEEEecCCCC
Q 017391 281 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-------DEDVRLIGVEAAGFG 330 (372)
Q Consensus 281 i~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~-------~~~vrvigVe~~gs~ 330 (372)
+++|+. +..+|+||+|+|+||+++|++.+++. ++.++||||||.++.
T Consensus 163 i~~q~~---~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~ 216 (324)
T cd01563 163 IAEQLG---WEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAA 216 (324)
T ss_pred HHHHcC---CCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCC
Confidence 999973 12489999999999999999999872 258999999999975
No 66
>PLN02569 threonine synthase
Probab=100.00 E-value=5.6e-35 Score=299.35 Aligned_cols=192 Identities=20% Similarity=0.233 Sum_probs=159.7
Q ss_pred CCCCEEEccccchh-hhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC----CeEEEecCcchHHHHHHHHH
Q 017391 121 RETPLYFAERLTDH-YRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR----KSIVAATGAGQHGVATAAAC 195 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~-l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~----~~~V~~aSsGN~G~AvA~aa 195 (372)
..|||+++++|++. + +..+||+|+|++|||||||||++...+..+++.|. ...|+++||||||.|+|++|
T Consensus 132 G~TPLv~~~~l~~~~~-----G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAaya 206 (484)
T PLN02569 132 GNSNLFWAERLGKEFL-----GMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYC 206 (484)
T ss_pred CCCceeEhhhhhHhhc-----CCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHH
Confidence 57999999999887 6 23589999999999999999999888887777654 14456679999999999999
Q ss_pred HHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHH
Q 017391 196 AKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQS 275 (372)
Q Consensus 196 ~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~ 275 (372)
+.+|++|+||||++.+ ++.|+.+|+.+||+|+.|++++++|++.+.+. .++ ..+|.++++ ||++ .+||+
T Consensus 207 a~~Gl~~~I~vP~~~~--~~~k~~qi~a~GA~Vi~v~g~~d~a~~~a~e~-~~~--~~~~~~n~~---Np~~---ieG~k 275 (484)
T PLN02569 207 AAAGIPSIVFLPADKI--SIAQLVQPIANGALVLSIDTDFDGCMRLIREV-TAE--LPIYLANSL---NSLR---LEGQK 275 (484)
T ss_pred HhcCCeEEEEEcCCCC--CHHHHHHHHhcCCEEEEECCCHHHHHHHHHHH-HHH--cCCEecCCC---Ccch---hHhHH
Confidence 9999999999999754 56899999999999999999999998887653 343 234555553 6665 46999
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC-------CCCcEEEEEecCCCCC
Q 017391 276 IIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-------DEDVRLIGVEAAGFGL 331 (372)
Q Consensus 276 t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~-------~~~vrvigVe~~gs~~ 331 (372)
|+++||++|+. +..||+||+|+|+||+++|++.+|++ ++.+|||+||+++|..
T Consensus 276 T~a~EI~eQl~---~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~p 335 (484)
T PLN02569 276 TAAIEILQQFD---WEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANP 335 (484)
T ss_pred HHHHHHHHHcC---CCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcH
Confidence 99999999862 12489999999999999999999973 3567999999999853
No 67
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.5e-34 Score=284.93 Aligned_cols=177 Identities=23% Similarity=0.317 Sum_probs=148.6
Q ss_pred CCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCC
Q 017391 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLAL 200 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi 200 (372)
..|||++. .+||+|+|++|||||||||++..++..+++.|.+.+| ++||||||.|+|++|+.+|+
T Consensus 57 G~TPLv~~--------------~~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~~~vv-~aSsGN~g~slA~~aa~~G~ 121 (338)
T PRK06450 57 GRTPLIKK--------------GNIWFKLDFLNPTGSYKDRGSVTLISYLAEKGIKQIS-EDSSGNAGASIAAYGAAAGI 121 (338)
T ss_pred CCCCceec--------------CCEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCEEE-EECCcHHHHHHHHHHHHcCC
Confidence 47999986 2799999999999999999999999989888876655 57899999999999999999
Q ss_pred cEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHH
Q 017391 201 DCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 280 (372)
Q Consensus 201 ~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~E 280 (372)
+|+||||++. ++.|+.+|+.+||+|+.++++++++.+.+ ++ .+.+|. .+. .||++ ++||+|+++|
T Consensus 122 ~~~i~vP~~~---~~~k~~~i~~~GA~vi~v~~~~~~~~~~a-----~~-~g~~~~-~~~--~np~~---ieG~kTia~E 186 (338)
T PRK06450 122 EVKIFVPETA---SGGKLKQIESYGAEVVRVRGSREDVAKAA-----EN-SGYYYA-SHV--LQPQF---RDGIRTLAYE 186 (338)
T ss_pred CEEEEEcCCC---CHHHHHHHHHcCCEEEEECCCHHHHHHHH-----Hh-cCeEec-cCC--CCccH---HHHHHHHHHH
Confidence 9999999987 68899999999999999999998876542 22 233444 333 25664 5699999999
Q ss_pred HHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC-------CCCcEEEEEecCCCC
Q 017391 281 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-------DEDVRLIGVEAAGFG 330 (372)
Q Consensus 281 i~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~-------~~~vrvigVe~~gs~ 330 (372)
|++|+. ...||+||+|+|+||+++|++.+|+. ++.+|||+|||+++.
T Consensus 187 I~eql~---~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~ 240 (338)
T PRK06450 187 IAKDLD---WKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVS 240 (338)
T ss_pred HHHHcC---CCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCC
Confidence 999863 13599999999999999999999972 235899999999974
No 68
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=1.5e-34 Score=294.65 Aligned_cols=186 Identities=21% Similarity=0.235 Sum_probs=158.1
Q ss_pred CCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCC
Q 017391 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLAL 200 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi 200 (372)
.+|||+++ ++++.+ +.+||+|+|++|||||||||++..++..|++.|.+++|+ +|+||||.|+|++|+.+|+
T Consensus 65 G~TPLv~~-~~~~~~------g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~ 136 (442)
T PRK05638 65 GGTPLIRA-RISEKL------GENVYIKDETRNPTGSFRDRLATVAVSYGLPYAANGFIV-ASDGNAAASVAAYSARAGK 136 (442)
T ss_pred CCCcEEcc-cchHHh------CCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCCCEEEE-eCCChHHHHHHHHHHHcCC
Confidence 47999999 477666 569999999999999999999999998888888877665 6899999999999999999
Q ss_pred cEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHH
Q 017391 201 DCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 280 (372)
Q Consensus 201 ~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~E 280 (372)
+|+||||++. ++.|+.+|+.+||+|+.++++++++.+.+.+ .+++ ..+|.+++.. ||++ .+|++++++|
T Consensus 137 ~~~i~vp~~~---~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~-~~~~--~~~~~~~~~~--np~~---~eG~~t~a~E 205 (442)
T PRK05638 137 EAFVVVPRKV---DKGKLIQMIAFGAKIIRYGESVDEAIEYAEE-LARL--NGLYNVTPEY--NIIG---LEGQKTIAFE 205 (442)
T ss_pred CEEEEEeCCC---CHHHHHHHHhcCcEEEEECCCHHHHHHHHHH-HHHh--CCeEecCCCC--ChhH---hhhHHHHHHH
Confidence 9999999976 5789999999999999999999999877754 4443 2355555532 5654 4699999999
Q ss_pred HHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC-C------CCcEEEEEecCCCCC
Q 017391 281 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-D------EDVRLIGVEAAGFGL 331 (372)
Q Consensus 281 i~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~-~------~~vrvigVe~~gs~~ 331 (372)
|++|+ + ||+||+|+|+||+++|++.+|+. . ..+||||||++++..
T Consensus 206 i~eq~----~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p 257 (442)
T PRK05638 206 LWEEI----N--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNP 257 (442)
T ss_pred HHHHH----C--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCH
Confidence 99996 2 89999999999999999999973 2 357999999998853
No 69
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=6.6e-35 Score=286.13 Aligned_cols=191 Identities=20% Similarity=0.197 Sum_probs=158.4
Q ss_pred CCCCEEEccccchhhhccCCCCC-eeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcC
Q 017391 121 RETPLYFAERLTDHYRNEKGEGP-EIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLA 199 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~-~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~G 199 (372)
.+|||+++++|++.+ +. +||+|+|++|||||||||++.+++..+.+.|+..+| ++|+||||.|+|++|+.+|
T Consensus 22 g~TPl~~~~~l~~~~------g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~~vv-~aSsGN~g~a~A~~a~~~g 94 (328)
T TIGR00260 22 GVTPLFRSPALVANV------GIKNLYVLELFHNPTLSFKDRGMAVALTKALELGNDTVL-CASTGNTGAAAAAYAGKAG 94 (328)
T ss_pred CCccCccchHHHHhc------CCccEEehhhccCCchhhHhhhHHHHHHHHHHcCCCEEE-EeCCcHHHHHHHHHhccCC
Confidence 589999999998876 44 999999999999999999999998888888876555 5789999999999999999
Q ss_pred CcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHH
Q 017391 200 LDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGK 279 (372)
Q Consensus 200 i~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~ 279 (372)
++|+|+||++.. +++|+.+++.+||+|+.++++++++.+.+.+. .++. .+|.++++|++ |++ ++||.++++
T Consensus 95 ~~~~v~~p~~~~--s~~k~~~~~~~GA~Vi~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~n~~-~~~---~~g~~t~~~ 165 (328)
T TIGR00260 95 VKVVILYPAGKI--SLGKLAQALGYNAEVVAIDGNFDDAQRLVKQL-FGDK--EALGLNSVNSI-PYR---LEGQKTYAF 165 (328)
T ss_pred CcEEEEECCCCC--CHHHHHHHHhcCcEEEEecCCHHHHHHHHHHH-Hhhc--CeeecccCCCC-CeE---eeeehhHHH
Confidence 999999999833 47899999999999999999999998777554 4432 24544554332 665 359999999
Q ss_pred HHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC---CC---CcEEEEEecCCCC
Q 017391 280 ETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN---DE---DVRLIGVEAAGFG 330 (372)
Q Consensus 280 Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~---~~---~vrvigVe~~gs~ 330 (372)
|+++|+.. ..||+||+|+|+||+++|++.+++. .. .++|++|||.++.
T Consensus 166 Ei~~q~~~---~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~ 219 (328)
T TIGR00260 166 EAVEQLGW---EAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAA 219 (328)
T ss_pred HHHHHhCC---CCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCC
Confidence 99999742 2589999999999999999999973 10 2399999999983
No 70
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=4.9e-34 Score=284.86 Aligned_cols=205 Identities=21% Similarity=0.215 Sum_probs=162.7
Q ss_pred HHHHHHhhcccCCCCCEEEccccchhhhccCCCC-CeeEEeecCCCc-CcchhhHHHHHHHHHHHHc-------------
Q 017391 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEG-PEIYLKREDLNH-VGAHKINNAIGQAMIAKRM------------- 173 (372)
Q Consensus 109 ~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~-~~IylK~E~~~p-TGSfKdRga~~~~~~a~~~------------- 173 (372)
+.+++.+..+ .+|||+++++|++.+ + .+||+|+|++|+ |||||+||+.+.+..+...
T Consensus 11 ~~~~~~~~~~--~~TPL~~~~~l~~~~------g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~ 82 (376)
T TIGR01747 11 LAFHKKIPGY--RPTPLCALDHLANLL------GLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEH 82 (376)
T ss_pred HHHHHhCCCC--CCCCCcchHHHHHHh------CCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHH
Confidence 3566777766 489999999999987 5 699999999985 8999999998777654331
Q ss_pred ----------CCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHH
Q 017391 174 ----------GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAI 243 (372)
Q Consensus 174 ----------g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~ 243 (372)
+. ..|+++|+||||+|+|++|+.+|++|+||||++. ++.|+.+|+.+||+|+.++++++++.+.+.
T Consensus 83 ~~~~~~~~~~~~-~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~---~~~k~~~i~~~GAeVi~v~~~~~~a~~~a~ 158 (376)
T TIGR01747 83 LKNDAIGEKMGQ-ATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGS---AQERVENILNLGAECTITDMNYDDTVRLAM 158 (376)
T ss_pred HhhhHHHhhcCC-CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECCCHHHHHHHHH
Confidence 23 3455678999999999999999999999999987 678999999999999999999999887775
Q ss_pred HHHHhccCCcEEEec-----cccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-C-C
Q 017391 244 RNWVGNLEKSYYLTG-----TVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-N-D 316 (372)
Q Consensus 244 ~~~~~~~~~~~y~~~-----s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~-~ 316 (372)
+ +.++ .+.++ .. .+++++|+ +++||++++.|+++|+.......||+||+|+|+||+++|++.+++ . .
T Consensus 159 ~-~~~~-~g~~~-~~~~~~~~~~~~~~~---ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~ 232 (376)
T TIGR01747 159 Q-MAQQ-HGWVV-VQDTAWEGYEKIPTW---IMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYS 232 (376)
T ss_pred H-HHHh-cCcEE-eccccccccccCCch---HHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcC
Confidence 4 4443 23333 33 23334444 467999999999999853111358999999999999999999886 2 3
Q ss_pred C-CcEEEEEecCCCCC
Q 017391 317 E-DVRLIGVEAAGFGL 331 (372)
Q Consensus 317 ~-~vrvigVe~~gs~~ 331 (372)
+ .+|||+|||++++.
T Consensus 233 ~~~p~vi~Vep~ga~~ 248 (376)
T TIGR01747 233 ENNPHSIVVEPDKADC 248 (376)
T ss_pred CCCCEEEEEeeCCCCH
Confidence 3 47999999999864
No 71
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=4.3e-34 Score=282.88 Aligned_cols=194 Identities=25% Similarity=0.322 Sum_probs=157.8
Q ss_pred CCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCC
Q 017391 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLAL 200 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi 200 (372)
..|||+++ +.+||+|+|++|||||||||++...+..|++.|.+.+|+ +|+||||+|+|++|+++|+
T Consensus 63 g~Tpl~~~-------------~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~ 128 (347)
T PRK08329 63 PITPTVKR-------------SIKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGINEVVI-DSSGNAALSLALYSLSEGI 128 (347)
T ss_pred CCCccccC-------------CCeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCCCEEEE-ECCCcHHHHHHHHHHHcCC
Confidence 46999987 358999999999999999999999999999999877665 6899999999999999999
Q ss_pred cEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHH
Q 017391 201 DCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE 280 (372)
Q Consensus 201 ~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~E 280 (372)
+|+||||++. ++.|+.+|+.+||+|+.++++++++.+.+. +++++ .+.+|. .+. .||+. .+||+++++|
T Consensus 129 ~~~v~vp~~~---~~~k~~~~~~~GA~v~~v~~~~~~~~~~a~-~l~~~-~~~~~~-~~~--~np~~---~eG~~t~~~E 197 (347)
T PRK08329 129 KVHVFVSYNA---SKEKISLLSRLGAELHFVEGDRMEVHEEAV-KFSKR-NNIPYV-SHW--LNPYF---LEGTKTIAYE 197 (347)
T ss_pred cEEEEECCCC---hHHHHHHHHHcCCEEEEECCCHHHHHHHHH-HHHHh-cCCeec-cCC--CCchh---hccchhHHHH
Confidence 9999999976 678999999999999999998888766664 34443 233454 332 36664 4699999999
Q ss_pred HHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC-------CCCcEEEEEecCCCCCCC--ccccccccCCC
Q 017391 281 TRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-------DEDVRLIGVEAAGFGLDS--GKHAATLAKGE 344 (372)
Q Consensus 281 i~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~-------~~~vrvigVe~~gs~~~~--~~~a~~l~~G~ 344 (372)
|++|+ + .||+||+|+|+||+++|++.+|+. ++.+|||+||++++.... .....+++.|.
T Consensus 198 i~eql----~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi 265 (347)
T PRK08329 198 IYEQI----G-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGI 265 (347)
T ss_pred HHHHc----C-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeE
Confidence 99986 2 499999999999999999999983 356899999999975432 12334555553
No 72
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-35 Score=267.20 Aligned_cols=227 Identities=22% Similarity=0.276 Sum_probs=181.3
Q ss_pred HHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHH
Q 017391 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHG 188 (372)
Q Consensus 109 ~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G 188 (372)
++.++++++++. .||++.++.|.+.. |.++|+|+|.+|.|||||.|||++.+..+..+.+...|++-||||||
T Consensus 13 ~~A~~rik~~ih-kTpVlTS~~ln~~~------g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~~kgvithSSGNHa 85 (323)
T KOG1251|consen 13 RAAHQRIKPFIH-KTPVLTSENLNEKV------GRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKRAKGVITHSSGNHA 85 (323)
T ss_pred HHHHHHHHhhhc-cCceechhhHHHHh------hhheEeehhhhhhccceehhhhHHHHHHhhHhhhcCceEeecCCcHH
Confidence 355677888885 79999999999987 78999999999999999999999998876644444444457899999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhH
Q 017391 189 VATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPI 268 (372)
Q Consensus 189 ~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 268 (372)
.|+|++|+..|++|+|+||++. +..|+..++.|||+|++++.+.++.-..+ +++.++ ..++++ +||+.
T Consensus 86 qAlalaAk~~giPa~IVvP~~A---P~~Kv~a~~~Yga~ii~~e~~~~sRE~va-~~ltee--~g~~~i------~Py~~ 153 (323)
T KOG1251|consen 86 QALALAAKILGIPATIVVPKDA---PICKVAATRGYGANIIFCEPTVESRESVA-KDLTEE--TGYYLI------HPYNH 153 (323)
T ss_pred HHHHHHHHhcCCCeEEEecCCC---hHHHHHHHHhcCceEEEecCccchHHHHH-HHHHHh--cCcEEe------CCCCC
Confidence 9999999999999999999998 67899999999999999998666544444 555554 334543 66632
Q ss_pred -HHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC----------CCccc
Q 017391 269 -MVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL----------DSGKH 336 (372)
Q Consensus 269 -lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~----------~~~~~ 336 (372)
-++.||+|+++|+++|+. ..|++|||+|+||+++|++.+.+ ..|.++|++|||++..- ..-..
T Consensus 154 p~vIaGqgTiA~ElleqVg-----~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~t 228 (323)
T KOG1251|consen 154 PSVIAGQGTIALELLEQVG-----EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDT 228 (323)
T ss_pred cceeeccchHHHHHHHhhC-----ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCC
Confidence 145699999999999974 48999999999999999998887 68999999999988642 01123
Q ss_pred cccccCCCceeecCcceeeeeCC
Q 017391 337 AATLAKGEVGVYHGAMSYLLQDE 359 (372)
Q Consensus 337 a~~l~~G~~gv~~g~~~~~l~d~ 359 (372)
-.|+++|...---|.++|.++-|
T Consensus 229 p~TIADG~r~~~lG~~t~pIir~ 251 (323)
T KOG1251|consen 229 PKTIADGVRTSHLGPLTWPIIRD 251 (323)
T ss_pred chhhhhhhhhccccccchHHHHH
Confidence 45777777666667777765433
No 73
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=7.8e-34 Score=285.13 Aligned_cols=208 Identities=18% Similarity=0.177 Sum_probs=160.6
Q ss_pred HHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCc-CcchhhHHHHHHHHHH--HHcCC----------
Q 017391 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNH-VGAHKINNAIGQAMIA--KRMGR---------- 175 (372)
Q Consensus 109 ~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~p-TGSfKdRga~~~~~~a--~~~g~---------- 175 (372)
.++++.+..+ .+|||++++.|++.+ +..+||+|+|++++ |||||+||+.+.+..+ .+.|.
T Consensus 30 ~~~~~~~~~~--~~TPL~~~~~L~~~~-----g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l 102 (396)
T TIGR03528 30 RAFHQSFPGY--QPTPLAELDNLAKHL-----GVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKL 102 (396)
T ss_pred HHHHhcCCCC--cCCCCcchHHHHHHh-----CCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHh
Confidence 3556666544 589999999999987 22699999999995 9999999998887643 22221
Q ss_pred ----------CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHH
Q 017391 176 ----------KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRN 245 (372)
Q Consensus 176 ----------~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~ 245 (372)
...|+++|+||||+|+|++|+.+|++|+||||++. ++.|+.+|+.+||+|+.++++++++.+.+.+
T Consensus 103 ~~~~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~---~~~K~~~ir~~GAeVi~~~~~~~~a~~~a~~- 178 (396)
T TIGR03528 103 KSNEIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGS---AQIRLENIRAEGAECTITDLNYDDAVRLAWK- 178 (396)
T ss_pred hhHHHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCC---cHHHHHHHHhcCCEEEEECCCHHHHHHHHHH-
Confidence 12566789999999999999999999999999987 5789999999999999999999999877755
Q ss_pred HHhccCCcEEEec----cccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc--CCCC-
Q 017391 246 WVGNLEKSYYLTG----TVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI--NDED- 318 (372)
Q Consensus 246 ~~~~~~~~~y~~~----s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~--~~~~- 318 (372)
++++ .+.+++.. ++++++++ +++||++++.||++|+.......||+||+|+|+||+++|++.+++ ..+.
T Consensus 179 ~a~~-~g~~~v~~~~~~~~~~~~~~---~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~ 254 (396)
T TIGR03528 179 MAQE-NGWVMVQDTAWEGYEKIPTW---IMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEER 254 (396)
T ss_pred HHHh-cCcEeeccccccccccCchH---HHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCC
Confidence 3443 24344311 33322233 456999999999999853211358999999999999999988774 2333
Q ss_pred cEEEEEecCCCCC
Q 017391 319 VRLIGVEAAGFGL 331 (372)
Q Consensus 319 vrvigVe~~gs~~ 331 (372)
+|||+|||++++.
T Consensus 255 p~vi~Vep~~a~~ 267 (396)
T TIGR03528 255 PITVIVEPDAADC 267 (396)
T ss_pred CEEEEEccCCCch
Confidence 5999999999864
No 74
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=6.2e-33 Score=270.37 Aligned_cols=198 Identities=26% Similarity=0.302 Sum_probs=155.6
Q ss_pred ccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcC--cchhhHHHHHHHHHHHHcCCCeEEEec-CcchHHHHHHHH
Q 017391 118 YVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHV--GAHKINNAIGQAMIAKRMGRKSIVAAT-GAGQHGVATAAA 194 (372)
Q Consensus 118 ~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pT--GSfKdRga~~~~~~a~~~g~~~~V~~a-SsGN~G~AvA~a 194 (372)
++.++|||+++++|++.. +.+||+|+|++||| ||||||++.+++..++++|.+.+|..+ |+||||.|+|++
T Consensus 3 ~~~~~TPl~~~~~l~~~~------g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~~vv~~g~ssGN~g~alA~~ 76 (311)
T TIGR01275 3 LIPWPTPIQYLPRISREI------GAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGADTVITVGAIQSNHARATALA 76 (311)
T ss_pred CCCCCCcceechhhhhhc------CCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHH
Confidence 456899999999998875 67999999999998 999999999999889888987777642 459999999999
Q ss_pred HHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC-chhHHHHHHHHH---HHhccCCcEEEeccccCCCChhHHH
Q 017391 195 CAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG-CFKEASSEAIRN---WVGNLEKSYYLTGTVVGPHPCPIMV 270 (372)
Q Consensus 195 a~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~-~~~da~~~a~~~---~~~~~~~~~y~~~s~~~~~p~~~lv 270 (372)
|+.+|++|+||||.... +..+..+++.+||+|+.++. +++++.+.+.+. ..++....++++.+.. |++..
T Consensus 77 a~~~G~~~~ivvp~~~~--~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~-- 150 (311)
T TIGR01275 77 AKKLGLDAVLVLREKEE--LNGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGGS--NSLGT-- 150 (311)
T ss_pred HHHhCCceEEEecCCcc--CCCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCCC--cHHHH--
Confidence 99999999999998642 34566678999999999985 555544333221 1222223455656543 55542
Q ss_pred HhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCC
Q 017391 271 REFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFG 330 (372)
Q Consensus 271 ~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~ 330 (372)
.++.+++.||++|+.. ...||+||+|+|+||+++|++.+++ .+++++|||||++.++
T Consensus 151 -~g~~~~~~EI~~q~~~--~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~ 208 (311)
T TIGR01275 151 -LGYVEAVLEIATQLES--EVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFG 208 (311)
T ss_pred -HHHHHHHHHHHHHHhc--CCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccH
Confidence 3777899999999741 1258999999999999999999998 5788999999987653
No 75
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=2.1e-32 Score=266.32 Aligned_cols=200 Identities=27% Similarity=0.303 Sum_probs=156.5
Q ss_pred CCEEEccccchhhhccCCCCCeeEEeecCCCcC---cchhhHHHHHHHHHHHHcCCCeEEEec-CcchHHHHHHHHHHHc
Q 017391 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHV---GAHKINNAIGQAMIAKRMGRKSIVAAT-GAGQHGVATAAACAKL 198 (372)
Q Consensus 123 TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pT---GSfKdRga~~~~~~a~~~g~~~~V~~a-SsGN~G~AvA~aa~~~ 198 (372)
|||+++++|++.++ .+.+||+|+|++||| ||||||++.+++..+++.|...+|.++ |+||||.|+|++|+.+
T Consensus 1 TPl~~~~~l~~~~g----~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~~vv~~ggs~GN~g~alA~~a~~~ 76 (307)
T cd06449 1 TPIQYLPRLSEHLG----GKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADTLVTVGGIQSNHTRQVAAVAAKL 76 (307)
T ss_pred CcccchhHHHHhhC----CCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHHHHHc
Confidence 89999999988761 146899999999999 566999999999888888887777643 5799999999999999
Q ss_pred CCcEEEEEcCCCcc-----ccHHHHHHHHHcCCEEEEEcCchhH----HHHHHHHHHHhccCCcEEEeccccCCCChhHH
Q 017391 199 ALDCTVFMGTADME-----KQSSKVLLMKLLGAQVKAVDGCFKE----ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIM 269 (372)
Q Consensus 199 Gi~~~Iv~P~~~~~-----~~~~k~~~l~~lGA~Vi~v~~~~~d----a~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~l 269 (372)
|++|+||||.+... .++.|+.+|+.+||+|+.++.++++ +..++.+.+.++....+++..+. +.|+..
T Consensus 77 G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 153 (307)
T cd06449 77 GLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGG-SEHPLG-- 153 (307)
T ss_pred CCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCC-CCCccc--
Confidence 99999999987531 1246888999999999999876543 23333344444322234444442 125554
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 270 VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 270 v~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
.+|+.+++.||.+|+.. .+..||+||+|+|+||+++|++.+++ .++.+|||+|||.++..
T Consensus 154 -~~G~~t~~~Ei~~q~~~-~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~ 214 (307)
T cd06449 154 -GLGYVGFVLEIAQQEEE-LGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPE 214 (307)
T ss_pred -HHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchH
Confidence 34899999999999864 34458999999999999999999998 67889999999999864
No 76
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=3.7e-32 Score=267.36 Aligned_cols=199 Identities=26% Similarity=0.308 Sum_probs=155.5
Q ss_pred CCCCEEEccccchhhhccCCCCCeeEEeecCCCcC--cchhhHHHHHHHHHHHHcCCCeEEEec-CcchHHHHHHHHHHH
Q 017391 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHV--GAHKINNAIGQAMIAKRMGRKSIVAAT-GAGQHGVATAAACAK 197 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pT--GSfKdRga~~~~~~a~~~g~~~~V~~a-SsGN~G~AvA~aa~~ 197 (372)
.+|||++++.|++.+ +.+||+|+|++||+ ||||||++.+.+..+++.|.+++|+.+ |+||||.|+|++|+.
T Consensus 14 ~~TPl~~~~~l~~~~------g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~vvt~g~s~gN~g~alA~~a~~ 87 (331)
T PRK03910 14 LPTPLEPLPRLSAAL------GPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADTLITAGAIQSNHARQTAAAAAK 87 (331)
T ss_pred CCCCceEhhhhhHhh------CCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCcchhHHHHHHHHHHHH
Confidence 589999999998876 67999999999997 599999999998888888987777533 348999999999999
Q ss_pred cCCcEEEEEcCCCcccc-----HHHHHHHHHcCCEEEEEcCc--hhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHH
Q 017391 198 LALDCTVFMGTADMEKQ-----SSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMV 270 (372)
Q Consensus 198 ~Gi~~~Iv~P~~~~~~~-----~~k~~~l~~lGA~Vi~v~~~--~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv 270 (372)
+|++|+||||+...... ..|+.+|+.+||+|+.++++ ..++.....+.+.++....++++.+. .|+..
T Consensus 88 ~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~--~~~~~--- 162 (331)
T PRK03910 88 LGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGG--SNALG--- 162 (331)
T ss_pred hCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCC--CCchh---
Confidence 99999999999764322 26778999999999999874 22222222233444322334444443 35554
Q ss_pred HhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 271 REFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 271 ~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
.+|+.+++.|+.+|+.. .+..||+||+|+|+||+++|++.+++ .+++++||||||+++..
T Consensus 163 ~~g~~~~~~Ei~~q~~~-~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~ 223 (331)
T PRK03910 163 ALGYVACALEIAQQLAE-GGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAA 223 (331)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHH
Confidence 34778999999999853 23358999999999999999999998 57899999999998753
No 77
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=5.7e-32 Score=266.67 Aligned_cols=202 Identities=23% Similarity=0.275 Sum_probs=159.0
Q ss_pred CCCCEEEccccchhhhccCCCCCeeEEeecCCCcC---cchhhHHHHHHHHHHHHcCCCeEEEec-CcchHHHHHHHHHH
Q 017391 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHV---GAHKINNAIGQAMIAKRMGRKSIVAAT-GAGQHGVATAAACA 196 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pT---GSfKdRga~~~~~~a~~~g~~~~V~~a-SsGN~G~AvA~aa~ 196 (372)
.+|||+++++|++.++ .+.+||+|+|++||+ ||||||++..++..|+++|+..++..+ ++||||.|+|++|+
T Consensus 13 g~TPl~~~~~l~~~~g----~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~ 88 (337)
T TIGR01274 13 GPSPIHPLPRLSQHLG----GKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAA 88 (337)
T ss_pred CCCCceEhHhhHHhcC----CCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHH
Confidence 5999999999998861 124999999999987 777999999999999999987766542 45999999999999
Q ss_pred HcCCcEEEEEcCCCc-c----ccHHHHHHHHHcCCEEEEEcCchh----HHHHHHHHHHHhccCCcEEEeccccCCCChh
Q 017391 197 KLALDCTVFMGTADM-E----KQSSKVLLMKLLGAQVKAVDGCFK----EASSEAIRNWVGNLEKSYYLTGTVVGPHPCP 267 (372)
Q Consensus 197 ~~Gi~~~Iv~P~~~~-~----~~~~k~~~l~~lGA~Vi~v~~~~~----da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 267 (372)
.+|++|+||||+... + .++.|+.+|+.+||+|+.++++++ +....+.+.+.++....+++..+ .+.|++.
T Consensus 89 ~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~-~~~~~~~ 167 (337)
T TIGR01274 89 HLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAG-CSDHPLG 167 (337)
T ss_pred HcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCC-CCCCccc
Confidence 999999999998531 1 125789999999999999987664 45555555554432233444332 2345654
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 268 IMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 268 ~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
. .|+.++++|+.+|+.+ .+..||+||+|+|+||+++|++.+++ .++.+||||||++++..
T Consensus 168 ~---~G~~~~~~Ei~eq~~~-~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~ 228 (337)
T TIGR01274 168 G---LGFVGFAFEVREQEGE-LGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPE 228 (337)
T ss_pred h---hHHHHHHHHHHHHHHh-cCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHH
Confidence 2 3777789999999853 44469999999999999999999998 57889999999999854
No 78
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-32 Score=263.36 Aligned_cols=235 Identities=22% Similarity=0.300 Sum_probs=190.3
Q ss_pred hhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC----CeEEEecCcchHHHH
Q 017391 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR----KSIVAATGAGQHGVA 190 (372)
Q Consensus 115 i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~----~~~V~~aSsGN~G~A 190 (372)
..+.+| .|||+++++++.-+ .++||+|.|+++|+||-|||-++.++..|+..|. +.++++.||||+|.+
T Consensus 46 ~~~liG-~TPlv~ln~i~~g~------~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGig 118 (362)
T KOG1252|consen 46 VRDLIG-NTPLVKLNKIAGGC------VARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIG 118 (362)
T ss_pred HHHHhC-CCceEEeccccCCc------cceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHH
Confidence 445776 89999999986544 7899999999999999999999999999999986 478899999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC--chhH---HHHHHHHHHHhccCCcEEEeccccCCCC
Q 017391 191 TAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CFKE---ASSEAIRNWVGNLEKSYYLTGTVVGPHP 265 (372)
Q Consensus 191 vA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~--~~~d---a~~~a~~~~~~~~~~~~y~~~s~~~~~p 265 (372)
+|++|+..|++|+++||+.. +++|+.+|+++||+|+.++. .++- +...+ ..+..+.++. |++.++.++..
T Consensus 119 LA~~~a~~Gyk~i~tmP~~m---s~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a-~~l~~~~pna-~~l~Qf~np~N 193 (362)
T KOG1252|consen 119 LAYMAALRGYKCIITMPEKM---SKEKRILLRALGAEIILTPPAAGMKGPESAIGKA-EELLNKTPNA-YILDQFHNPGN 193 (362)
T ss_pred HHHHHHHcCceEEEEechhh---hHHHHHHHHHcCCEEEecChHHccCChHHHHHHH-HHHHHhCCCh-HHHHHhcCCCC
Confidence 99999999999999999987 78999999999999999985 2333 45555 3455555554 56777764432
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCCCCccc-cc--ccc
Q 017391 266 CPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGLDSGKH-AA--TLA 341 (372)
Q Consensus 266 ~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~~~~~~-a~--~l~ 341 (372)
. . .++.++|.||++|+ .+.+|.||.++|+|||++|+.++++ .+++++|++|||.+|.+.++.. .+ ..-
T Consensus 194 p--~--~hy~ttg~EI~~q~----~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I 265 (362)
T KOG1252|consen 194 P--L--AHYETTGPEIWRQL----DGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKI 265 (362)
T ss_pred c--c--cccccccHHHHHHh----cCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccce
Confidence 2 2 38899999999987 3569999999999999999999998 7999999999999998765433 22 333
Q ss_pred CCC-ceeecCcceeeeeCCCCcccccccc
Q 017391 342 KGE-VGVYHGAMSYLLQDEEGQILGTHSV 369 (372)
Q Consensus 342 ~G~-~gv~~g~~~~~l~d~~~~~~~~~si 369 (372)
.|+ .|..++....-+.|+.-++.+..+|
T Consensus 266 ~GIGyg~~p~~ld~~~vd~~~~~~~d~A~ 294 (362)
T KOG1252|consen 266 QGIGYGFIPTTLDTKLVDEVLKVSSDEAI 294 (362)
T ss_pred eccccCcCccccchHHHHHHHHhCCHHHH
Confidence 454 5677777777778887777766554
No 79
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.7e-31 Score=263.25 Aligned_cols=201 Identities=25% Similarity=0.319 Sum_probs=156.4
Q ss_pred CCCCEEEccccchhhhccCCCC-CeeEEeecCCCcC---cchhhHHHHHHHHHHHHcCCCeEEEec-CcchHHHHHHHHH
Q 017391 121 RETPLYFAERLTDHYRNEKGEG-PEIYLKREDLNHV---GAHKINNAIGQAMIAKRMGRKSIVAAT-GAGQHGVATAAAC 195 (372)
Q Consensus 121 ~~TPL~~l~~Ls~~l~~~~~~~-~~IylK~E~~~pT---GSfKdRga~~~~~~a~~~g~~~~V~~a-SsGN~G~AvA~aa 195 (372)
.+|||++++++++.+ +. .+||+|+|++||+ ||||||.+..++..+++.|..+++..+ |+||||.|+|++|
T Consensus 14 g~TPL~~~~~l~~~~-----g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~G~s~GN~g~alA~aa 88 (337)
T PRK12390 14 GPTPIHPLKRLSAHL-----GGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNHTRQVAAVA 88 (337)
T ss_pred CCCcceeHHHHHHHh-----CCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHH
Confidence 489999999998876 22 6999999999998 777999999999999999997766532 5699999999999
Q ss_pred HHcCCcEEEEEcCCCcc-----ccHHHHHHHHHcCCEEEEEcCchh----HHHHHHHHHHHhccCCcEEEeccccCCCCh
Q 017391 196 AKLALDCTVFMGTADME-----KQSSKVLLMKLLGAQVKAVDGCFK----EASSEAIRNWVGNLEKSYYLTGTVVGPHPC 266 (372)
Q Consensus 196 ~~~Gi~~~Iv~P~~~~~-----~~~~k~~~l~~lGA~Vi~v~~~~~----da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 266 (372)
+.+|++|+||||...+. ....|+.+|+.+||+|+.++++++ ++...+.+.+.+. .+..|.+....+.|++
T Consensus 89 ~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 167 (337)
T PRK12390 89 AHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAA-GGKPYAIPAGASDHPL 167 (337)
T ss_pred HHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhC-CCceEEeCCcCCCCCc
Confidence 99999999998764321 123477899999999999988654 5555554443332 2334433222233455
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 267 PIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 267 ~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
. ..|+.+++.|+++|+.+ ++..||+||+|+|+||+++|++.+++ .++++||||||++++..
T Consensus 168 ~---~~G~~~~a~Ei~~q~~~-~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~ 229 (337)
T PRK12390 168 G---GLGFVGFAEEVRAQEAE-LGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPE 229 (337)
T ss_pred c---cHHHHHHHHHHHHHHHh-cCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchH
Confidence 4 23777789999999753 45469999999999999999999998 57889999999999854
No 80
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.98 E-value=5.3e-32 Score=271.94 Aligned_cols=188 Identities=19% Similarity=0.185 Sum_probs=149.9
Q ss_pred CCCEEEccccchhhhccCCCCC-eeEE-------eecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHH
Q 017391 122 ETPLYFAERLTDHYRNEKGEGP-EIYL-------KREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAA 193 (372)
Q Consensus 122 ~TPL~~l~~Ls~~l~~~~~~~~-~Iyl-------K~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~ 193 (372)
.|||+++++|++.+ |. ++|+ |+|++|||||||||++...+..+.+.|.+.+| ++|+||||.|+|+
T Consensus 62 ~tpl~~~~~L~~~l------G~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~~~Vv-~aSsGN~g~alA~ 134 (398)
T TIGR03844 62 GPVTYKSEGLAREL------GLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGGKTLV-VASAGNTGRAFAE 134 (398)
T ss_pred CCceeehHHHHHHh------CCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCCCEEE-EECCCHHHHHHHH
Confidence 58999999999987 44 9999 56669999999999999999988888865555 5789999999999
Q ss_pred HHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhh
Q 017391 194 ACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREF 273 (372)
Q Consensus 194 aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~g 273 (372)
+|+++|++|+||||++.. ..+...++.+||+|+.++++++|+.+.+.+ ++++ .+ +|...+. .||+ .++|
T Consensus 135 ~aa~~Gi~~~I~vP~~~~---~~~~~~~~~~ga~vv~v~g~~d~a~~~a~~-~a~~-~g-~~~~~~~--~~p~---~ieG 203 (398)
T TIGR03844 135 VSAITGQPVILVVPKSSA---DRLWTTEPASSVLLVTVDGDYTDAIALADR-IATL-PG-FVPEGGA--RNVA---RRDG 203 (398)
T ss_pred HHHHcCCcEEEEECCChH---HHHHHHhhCCcEEEEECCCCHHHHHHHHHH-HHHh-CC-ccccCCC--CCHH---HHhh
Confidence 999999999999999752 222223478899999999999999888755 4443 23 3432221 2454 3579
Q ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC--------CCCcEEEEEecCCCCC
Q 017391 274 QSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN--------DEDVRLIGVEAAGFGL 331 (372)
Q Consensus 274 q~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~--------~~~vrvigVe~~gs~~ 331 (372)
|+|+++|+++|+. ..||+||+|+|+|+++.|++.+++. +..+|+++||++++..
T Consensus 204 ~~Ti~~Ei~eql~----~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p 265 (398)
T TIGR03844 204 MGTVMLDAAVTIG----SLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVP 265 (398)
T ss_pred HHHHHHHHHHHcC----CCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchH
Confidence 9999999999863 3489999999999889999888763 2458999999999853
No 81
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.98 E-value=1.5e-31 Score=258.34 Aligned_cols=192 Identities=32% Similarity=0.375 Sum_probs=149.6
Q ss_pred hcccCCCCCEEEcc--ccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHH
Q 017391 116 RDYVGRETPLYFAE--RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAA 193 (372)
Q Consensus 116 ~~~v~~~TPL~~l~--~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~ 193 (372)
...+ .+|||++++ .+++. .+.+||+|+|++|||||||||++.+.+..+++.+.+.+| ++|+||||.|+|+
T Consensus 2 ~~~~-~~TPl~~~~~~~~~~~------~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~~~vv-~assGN~g~a~A~ 73 (306)
T PF00291_consen 2 SLGI-GPTPLVRLPSRLLSEL------GGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGGRTVV-GASSGNHGRALAY 73 (306)
T ss_dssp GGGS-SSS-EEEEHEHHHHHC------TTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTTSEEE-EESSSHHHHHHHH
T ss_pred cCCC-cCCCEEECccccchhc------cCCeEEEEECCCCCcCCcccccchhhhhhccccccceee-eeccCCceehhhh
Confidence 3456 489999975 33333 478999999999999999999999999999888877775 5789999999999
Q ss_pred HHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchh----HHHHHHHHHH--HhccCCcEEEeccccCCCChh
Q 017391 194 ACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK----EASSEAIRNW--VGNLEKSYYLTGTVVGPHPCP 267 (372)
Q Consensus 194 aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~----da~~~a~~~~--~~~~~~~~y~~~s~~~~~p~~ 267 (372)
+|+.+|++|+|+||++. ++.|+++|+.+||+|+.+..+++ ++.+.+.+.+ .... ... ++++ .+
T Consensus 74 ~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-----~~ 142 (306)
T PF00291_consen 74 AAARLGLKCTIVVPEDV---SPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPF-NGE--LNQY-----NN 142 (306)
T ss_dssp HHHHHTCEEEEEEETTS---HHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHS-TTE--ESTT-----TS
T ss_pred hhhhccccceeeecccc---ccccccceeeecceEEEcccccccccccccccccccccccccc-ccc--cCcc-----cc
Confidence 99999999999999985 56899999999999999987644 4444333221 1111 111 2222 12
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCC--EEEEcCCchhHHHhhhhhhcC--CCCcEEEEEecCCCCC
Q 017391 268 IMVREFQSIIGKETRKQAMEKWGGKPD--VLLACVGSGSNALGLFHEFIN--DEDVRLIGVEAAGFGL 331 (372)
Q Consensus 268 ~lv~~gq~t~g~Ei~~Ql~~~~g~~pd--~vvvpvG~GG~laGi~~~~~~--~~~vrvigVe~~gs~~ 331 (372)
.....|+.+++.|+++|+. .|| +||+|+|+||+++|++.+++. .+.+|||+||+.+++.
T Consensus 143 ~~~~~g~~~~~~Ei~~q~~-----~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~~~~~vigv~~~~~~~ 205 (306)
T PF00291_consen 143 PNVIAGYATIGLEIYEQLG-----KPDPDYVVVPVGTGGTAAGIAAGLKELILPPVRVIGVEPEGSDP 205 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----TESESEEEEEESSSHHHHHHHHHHHHHCHTTSEEEEEEETTGHH
T ss_pred hhhhhhhhhcchhcccccc-----cccceEEEecCCchhHHHHHHhhhhhhhcccccceeeeccCCcc
Confidence 2345699999999999974 355 599999999999999999986 5799999999998843
No 82
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.97 E-value=2.2e-30 Score=254.61 Aligned_cols=194 Identities=23% Similarity=0.341 Sum_probs=150.1
Q ss_pred CCCCCEEEccccchhhhccCCCCCeeEEeecCCCcC--cchhhHHHHHHHHHHHHcCCCeEEE-ecCcchHHHHHHHHHH
Q 017391 120 GRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHV--GAHKINNAIGQAMIAKRMGRKSIVA-ATGAGQHGVATAAACA 196 (372)
Q Consensus 120 ~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pT--GSfKdRga~~~~~~a~~~g~~~~V~-~aSsGN~G~AvA~aa~ 196 (372)
.++|||+++++|++.. +.+||+|+|++||+ ||||+|++.+++..+++.|++++|+ ++|+||||.|+|++|+
T Consensus 19 ~~~TPl~~~~~l~~~~------g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~ 92 (329)
T PRK14045 19 PWETPIQYLPNISREL------GADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAK 92 (329)
T ss_pred CCCCCcccchhhHHHh------CCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHH
Confidence 3699999999998876 67999999999996 8999999999988888889887774 5778999999999999
Q ss_pred HcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC--ch---hHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHH
Q 017391 197 KLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG--CF---KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVR 271 (372)
Q Consensus 197 ~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~--~~---~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~ 271 (372)
.+|++|+||||.... ...|...++.+||+|+.++. ++ +.+.+.+ +++.++....++++.+. .|+....
T Consensus 93 ~~G~~~~ivvp~~~~--~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~p~~~--~n~~~~~-- 165 (329)
T PRK14045 93 KLGLDAVLVLRGKEE--LKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVA-EELKGEGRKPYIIPPGG--ASPVGTL-- 165 (329)
T ss_pred HcCCeEEEEEeCCCC--CCcCHHHHHHCCCEEEEECCCcccchHHHHHHHH-HHHHhcCCCEEEECCCC--CchhHHH--
Confidence 999999999997542 33466678999999987763 22 2333333 33444333345555543 2555432
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCC
Q 017391 272 EFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAG 328 (372)
Q Consensus 272 ~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~g 328 (372)
++.....||.+|+.+ .+..+|+||+|+|+||+++|++.+++ .++++|||||++.+
T Consensus 166 -g~~~~~~EI~~q~~~-~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 166 -GYVRAVGEIATQVKK-LGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred -HHHHHHHHHHHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 444444599999853 33458999999999999999999998 68999999999976
No 83
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.97 E-value=1.8e-29 Score=239.99 Aligned_cols=210 Identities=39% Similarity=0.535 Sum_probs=175.4
Q ss_pred HHHHHHhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHH
Q 017391 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHG 188 (372)
Q Consensus 109 ~~l~~~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G 188 (372)
+|.++.... ++|||||+++.+|.+.|+ ...+||.|.|...||||||.+.|++++-.++..|.+++++++++|++|
T Consensus 66 ~Ev~e~Y~~-~gRPTPL~RA~~LE~~L~----tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQWG 140 (432)
T COG1350 66 EEVREAYLQ-IGRPTPLIRAKNLEEALG----TPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQWG 140 (432)
T ss_pred HHHHHHHHH-hCCCCchhhhhhHHHHhC----CCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCchHH
Confidence 356655543 579999999999999995 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC------------------chhHHHHHHHHHHHhcc
Q 017391 189 VATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG------------------CFKEASSEAIRNWVGNL 250 (372)
Q Consensus 189 ~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~------------------~~~da~~~a~~~~~~~~ 250 (372)
.|++.||+.+|++|+|||-+..-.+.+-+...|+.+||+|+..+. ++.-|+.+|.++..++
T Consensus 141 sAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~- 219 (432)
T COG1350 141 SALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKN- 219 (432)
T ss_pred HHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhC-
Confidence 999999999999999999875544445566799999999987654 3345677787776665
Q ss_pred CCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC-----CCCcEEEEEe
Q 017391 251 EKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-----DEDVRLIGVE 325 (372)
Q Consensus 251 ~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~-----~~~vrvigVe 325 (372)
.+..|.++|..+ . +.-+|.++|+|+.+|+. +.+..||++|.|||+|+|++|+...|.. ....|+|+||
T Consensus 220 ~~~kY~lGSVln-----h-vllhQTViGlEakkQle-~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAve 292 (432)
T COG1350 220 ENTKYSLGSVLN-----H-VLLHQTVIGLEAKKQLE-QAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVE 292 (432)
T ss_pred CCceecchhHHH-----H-HHHHHHHHhHHHHHHHH-hcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeC
Confidence 467898888642 1 23499999999999974 5788899999999999999999887751 2348999999
Q ss_pred cCCCCC
Q 017391 326 AAGFGL 331 (372)
Q Consensus 326 ~~gs~~ 331 (372)
|..|+.
T Consensus 293 p~a~P~ 298 (432)
T COG1350 293 PKACPK 298 (432)
T ss_pred CccCCc
Confidence 999875
No 84
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.96 E-value=6.1e-29 Score=232.17 Aligned_cols=237 Identities=21% Similarity=0.296 Sum_probs=182.9
Q ss_pred HhhcccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCcCcchhhHHHHHHHHHHHHcCC---CeEEEecCcchHHHH
Q 017391 114 ALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR---KSIVAATGAGQHGVA 190 (372)
Q Consensus 114 ~i~~~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~pTGSfKdRga~~~~~~a~~~g~---~~~V~~aSsGN~G~A 190 (372)
-+.+++| +|||+++..|++.. |++|+.|.|++||.||-|||.|++.+..|++.|+ ..+|++.++|+||++
T Consensus 42 Gv~~~IG-nTpliri~sLs~aT------GcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIs 114 (391)
T KOG1481|consen 42 GVEGAIG-NTPLIRINSLSNAT------GCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGIS 114 (391)
T ss_pred hhHHhhC-CCceEEeecccccc------ccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchh
Confidence 3456776 89999999999985 8999999999999999999999999999999987 578999999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC----chhHHHHHHHHHHHhccCCc-----EEEecccc
Q 017391 191 TAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG----CFKEASSEAIRNWVGNLEKS-----YYLTGTVV 261 (372)
Q Consensus 191 vA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~----~~~da~~~a~~~~~~~~~~~-----~y~~~s~~ 261 (372)
+|..|..+|++|+|+||++. +++|.+.++.+||+|..|.. +.+.-...|+++ +.+..+. -|..+|+.
T Consensus 115 lA~v~~a~Gyk~~I~mPddq---s~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~-an~~~~~~ngi~g~fAdQFe 190 (391)
T KOG1481|consen 115 LAHVARALGYKCHIYMPDDQ---SQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRA-ANETPNASNGIRGWFADQFE 190 (391)
T ss_pred HHHhhhhcCcceEEECCChH---HHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHH-hhhcccccCCcccchhhhhc
Confidence 99999999999999999987 78999999999999988875 223333444442 2222222 24446664
Q ss_pred CCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcC-C-CCcEEEEEecCCCCCCC------
Q 017391 262 GPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-D-EDVRLIGVEAAGFGLDS------ 333 (372)
Q Consensus 262 ~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~-~-~~vrvigVe~~gs~~~~------ 333 (372)
|+.+|. .++.++|.||+.|.+ +.+|+|++.+|+||+++|+.+++++ + ..+.+.-.+|-||++..
T Consensus 191 --N~AN~~--aHyetTGPEIw~Qtk----GniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GV 262 (391)
T KOG1481|consen 191 --NVANWL--AHYETTGPEIWHQTK----GNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGV 262 (391)
T ss_pred --CHHHHH--HHhcCcCcHHHHhhc----CCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhh
Confidence 444544 488999999988853 4689999999999999999999983 3 34888999999997511
Q ss_pred ------------ccccccccCCC-ceeecCcce--eeeeCCCCcccccccc
Q 017391 334 ------------GKHAATLAKGE-VGVYHGAMS--YLLQDEEGQILGTHSV 369 (372)
Q Consensus 334 ------------~~~a~~l~~G~-~gv~~g~~~--~~l~d~~~~~~~~~si 369 (372)
....+++.+|. ..-+-++.+ +-|+|+.-.+.|..+|
T Consensus 263 my~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai 313 (391)
T KOG1481|consen 263 MYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAI 313 (391)
T ss_pred hhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHH
Confidence 12356777775 333333333 3457877777776655
No 85
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.88 E-value=1.7e-21 Score=184.99 Aligned_cols=201 Identities=29% Similarity=0.344 Sum_probs=159.0
Q ss_pred ccCCCCCEEEccccchhhhccCCCCCeeEEeecCCCc--CcchhhHHHHHHHHHHHHcCCCeEEEecCc-chHHHHHHHH
Q 017391 118 YVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNH--VGAHKINNAIGQAMIAKRMGRKSIVAATGA-GQHGVATAAA 194 (372)
Q Consensus 118 ~v~~~TPL~~l~~Ls~~l~~~~~~~~~IylK~E~~~p--TGSfKdRga~~~~~~a~~~g~~~~V~~aSs-GN~G~AvA~a 194 (372)
++..||||.+++++++.+ +.+||+||||+.+ .|.+|+|++.+.+..|.+.|.+++|+.++. .||..++|++
T Consensus 11 l~~~pTPiq~L~rls~~l------g~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dTlvT~GgiQSNh~r~tAav 84 (323)
T COG2515 11 LIFGPTPIQKLPRLSAHL------GVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADTLVTYGGIQSNHVRQTAAV 84 (323)
T ss_pred cCCCCChhhhHHHHHHhc------CeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcEEEEecccchhHHHHHHHH
Confidence 455799999999999997 6899999999955 588999999999999999999999987655 8999999999
Q ss_pred HHHcCCcEEEEEcCCC-ccccHHHHHHHHHcCCEEEEEcCchhH----HHHHHHHHHHhccCCcEEEeccccCCCChhHH
Q 017391 195 CAKLALDCTVFMGTAD-MEKQSSKVLLMKLLGAQVKAVDGCFKE----ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIM 269 (372)
Q Consensus 195 a~~~Gi~~~Iv~P~~~-~~~~~~k~~~l~~lGA~Vi~v~~~~~d----a~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~l 269 (372)
|+++|++|+.+..... .-....++...+.+|+++..++...|- -....++....+..+.+.++.+. .||+..+
T Consensus 85 A~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG--~~~~g~l 162 (323)
T COG2515 85 AAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGG--SSPLGAL 162 (323)
T ss_pred HHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCC--cCccccc
Confidence 9999999999996543 112456888899999999999874332 22333344444444455555443 3565433
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhc-CCCCcEEEEEecCCCCC
Q 017391 270 VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFI-NDEDVRLIGVEAAGFGL 331 (372)
Q Consensus 270 v~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~-~~~~vrvigVe~~gs~~ 331 (372)
|+.-.+.|+.+|..+ + ..+|.|||++|+|||.||+..++. .+++++|||+...+.+.
T Consensus 163 ---Gyv~~a~Ei~~Q~~~-~-~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~ 220 (323)
T COG2515 163 ---GYVRLALEIAEQAEQ-L-LKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPE 220 (323)
T ss_pred ---cHHHHHHHHHHHHhh-c-cCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHH
Confidence 777778999998753 3 468999999999999999999997 67899999999988754
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.59 E-value=1.6e-14 Score=137.27 Aligned_cols=216 Identities=19% Similarity=0.221 Sum_probs=164.1
Q ss_pred CCCEEEccccch----hhhccCCCCCeeEEeecCCCc-CcchhhHHHHHHHH-----HHHHcCC----------------
Q 017391 122 ETPLYFAERLTD----HYRNEKGEGPEIYLKREDLNH-VGAHKINNAIGQAM-----IAKRMGR---------------- 175 (372)
Q Consensus 122 ~TPL~~l~~Ls~----~l~~~~~~~~~IylK~E~~~p-TGSfKdRga~~~~~-----~a~~~g~---------------- 175 (372)
.+||++.+.+-+ ++.++ -..++|+|++.|-| +||.|.||-.+.++ +|.+.|.
T Consensus 78 ES~lv~i~~mq~~Le~~Y~~~--i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~ 155 (443)
T COG3048 78 ESPLVEIPAMQKRLEKEYQQP--IPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFK 155 (443)
T ss_pred ccchhhhHHHHHHHHHHhcCC--CCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHH
Confidence 578887754433 22111 13489999999999 79999999877765 3334442
Q ss_pred ----CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccC
Q 017391 176 ----KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLE 251 (372)
Q Consensus 176 ----~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~ 251 (372)
+.-|.+.|+||.|.++....+.+|.+++|.|..+. .+.|...+|..|.+|++.+.+|..|+++-+++ ++.++
T Consensus 156 ~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADA---r~WKKd~LRs~gV~ViEYe~DY~~AVeeGRk~-a~~DP 231 (443)
T COG3048 156 DFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADA---RAWKKDKLRSHGVTVVEYEQDYGVAVEEGRKE-AESDP 231 (443)
T ss_pred HHHHhheEeecccCccceehhhhhhhhcceEEEEecchH---HHHHHHHHHhcCceEEEecchhhHHHHHhhhh-hccCC
Confidence 23367788999999999999999999999998877 68999999999999999999999999888665 45556
Q ss_pred CcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhC-----CCCCEEEEcCCchhHHHhhhhhhc--CCCCcEEEEE
Q 017391 252 KSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWG-----GKPDVLLACVGSGSNALGLFHEFI--NDEDVRLIGV 324 (372)
Q Consensus 252 ~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g-----~~pd~vvvpvG~GG~laGi~~~~~--~~~~vrvigV 324 (372)
..+|+ +--++ +.+. -|+.+.+..+..|+.++ | ..|-.|..|+|-||.-.|++.++| -+.+|.++-+
T Consensus 232 ~c~Fi-DDE~S----~~LF-LGYaVAa~Rlk~Q~d~~-gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFa 304 (443)
T COG3048 232 NCFFI-DDENS----RTLF-LGYAVAAQRLKKQFDEQ-GIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFA 304 (443)
T ss_pred ceEEe-cccch----hhhh-hhHHHHHHHHHHHHHhc-CceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEe
Confidence 66665 32222 3332 28999999999998653 3 356789999999999999999988 4778999999
Q ss_pred ecCCCCC--------------------CCccccccccCCCceeecC
Q 017391 325 EAAGFGL--------------------DSGKHAATLAKGEVGVYHG 350 (372)
Q Consensus 325 e~~gs~~--------------------~~~~~a~~l~~G~~gv~~g 350 (372)
||..|+- ++..+++.|+.|.++-+.|
T Consensus 305 EPthsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVg 350 (443)
T COG3048 305 EPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVG 350 (443)
T ss_pred cCCCChHHHHhhhhccccceeeEeecccccccccceeecCccchHH
Confidence 9999852 3455677788777654433
No 87
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=99.21 E-value=7.4e-12 Score=98.36 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=48.2
Q ss_pred EEeecCCCCCCcCcccccccCCCCCCCccCCCCCCCcCCCCccccccchhhhHHHHHHHHHhhhCCchHHHHHHHHhhcc
Q 017391 39 QKYSTSSPIMRKPLINSLLPKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDY 118 (372)
Q Consensus 39 ~~~s~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~g~~gG~y~Pe~l~~~~~~L~~~~~~~~~~~~f~~~l~~~i~~~ 118 (372)
||+|||++...+||+||++ +|+++| ||||||+.+|. +...+++.+.+.+|.+....++..+
T Consensus 1 ~y~STR~~~~~vsf~eAil-------~GlA~D--------GGLyvP~~iP~----l~~~~l~~l~~~sy~elA~~il~~f 61 (79)
T PF14821_consen 1 KYISTRGKSPPVSFKEAIL-------QGLAPD--------GGLYVPEEIPK----LSKEELEELKNLSYAELAFEILSPF 61 (79)
T ss_dssp -EEETTCCCCEE-HHHHHH-------H-SBTT--------SB-EEESS---------HHHHHHHTTS-HHHHHHHHHHHH
T ss_pred CceeCCCCCCCcCHHHHHH-------hCCCCC--------CeeEecCcCCC----CCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6999999999999999999 999999 99999998877 8888888888999998888888777
Q ss_pred cC
Q 017391 119 VG 120 (372)
Q Consensus 119 v~ 120 (372)
++
T Consensus 62 ~~ 63 (79)
T PF14821_consen 62 LG 63 (79)
T ss_dssp CC
T ss_pred Hc
Confidence 73
No 88
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.13 E-value=2.2 Score=39.17 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=38.9
Q ss_pred EEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEc
Q 017391 179 VAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 179 V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~ 232 (372)
++.+.+|+.|..++.+....+.++.+++.+.. ......++..|++|+.++
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~----~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDPS----SDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSSH----HHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEeccc----hhhhhhhhcccceEeecc
Confidence 34466799999999998889999999997652 344567888999987554
No 89
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=81.90 E-value=12 Score=33.25 Aligned_cols=77 Identities=19% Similarity=0.095 Sum_probs=52.7
Q ss_pred cCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEc------CCCccccHHHHHHHHHcCCE
Q 017391 154 HVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMG------TADMEKQSSKVLLMKLLGAQ 227 (372)
Q Consensus 154 pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P------~~~~~~~~~k~~~l~~lGA~ 227 (372)
|.--+-++.+...+..|.+.|.+.+|+++++|.++.-++-+...- ++++++.- ++..+-..+-.+.++..|++
T Consensus 7 pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAK 85 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHHcCce
Confidence 343455666666677888889999999888899988766554433 88887763 23333345666678888888
Q ss_pred EEEE
Q 017391 228 VKAV 231 (372)
Q Consensus 228 Vi~v 231 (372)
|..-
T Consensus 86 v~~~ 89 (186)
T COG1751 86 VLTQ 89 (186)
T ss_pred eeee
Confidence 8543
No 90
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=81.73 E-value=9.2 Score=29.11 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=27.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCc
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMGTADM 211 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~ 211 (372)
+++. ++|..|.-+|...+.+|.+++++.+....
T Consensus 2 vvVi-GgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVI-GGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEE-SSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEE-CcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 3443 68999999999999999999999987654
No 91
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=81.66 E-value=7.8 Score=33.08 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=44.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCC-CccccHHHHHHHHHcCCEEEEEcCc--hhHHHHHHHHHHH
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTA-DMEKQSSKVLLMKLLGAQVKAVDGC--FKEASSEAIRNWV 247 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~-~~~~~~~k~~~l~~lGA~Vi~v~~~--~~da~~~a~~~~~ 247 (372)
++++.++++.-|.++|......|-..++++... ..+..+..+..++..|.++..+..+ ..+..+.+.+...
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 455656678999999999888877666666554 1122344455667889988666542 2333444444444
No 92
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=79.39 E-value=5.1 Score=33.02 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=12.7
Q ss_pred CCCEEEEcCCchhHHHhhhhhhc
Q 017391 292 KPDVLLACVGSGSNALGLFHEFI 314 (372)
Q Consensus 292 ~pd~vvvpvG~GG~laGi~~~~~ 314 (372)
.+|+++-++|++..+.-.+..++
T Consensus 58 ~~d~vid~~g~~~~~~~~~~~l~ 80 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQEAIKLLR 80 (130)
T ss_dssp SEEEEEESSSSHHHHHHHHHHEE
T ss_pred cceEEEEecCcHHHHHHHHHHhc
Confidence 35666666666555544444443
No 93
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=72.74 E-value=29 Score=31.54 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=42.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYL 256 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~ 256 (372)
+.|.-.|||-+|.++|.++...|-+|+++....... . -.|.+++.+.. .+|-.+.+.+ ...+. ..++
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~---~------p~~~~~i~v~s-a~em~~~~~~-~~~~~--Di~I 87 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP---P------PPGVKVIRVES-AEEMLEAVKE-LLPSA--DIII 87 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------------TTEEEEE-SS-HHHHHHHHHH-HGGGG--SEEE
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc---c------cccceEEEecc-hhhhhhhhcc-ccCcc--eeEE
Confidence 667778899999999999999999999999764321 1 24678888875 5554444433 33332 3444
Q ss_pred ecccc
Q 017391 257 TGTVV 261 (372)
Q Consensus 257 ~~s~~ 261 (372)
...+.
T Consensus 88 ~aAAV 92 (185)
T PF04127_consen 88 MAAAV 92 (185)
T ss_dssp E-SB-
T ss_pred Eecch
Confidence 44443
No 94
>PRK06128 oxidoreductase; Provisional
Probab=72.37 E-value=29 Score=33.15 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=38.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
++++.+++|--|.++|......|.++++..........+.....++..|.+++.+..+
T Consensus 57 ~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 114 (300)
T PRK06128 57 KALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGD 114 (300)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecC
Confidence 4555566788999999999999999987764322111233444666778887665543
No 95
>PRK06182 short chain dehydrogenase; Validated
Probab=69.52 E-value=44 Score=31.18 Aligned_cols=66 Identities=15% Similarity=0.066 Sum_probs=41.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHh
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 248 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~ 248 (372)
.+++.+++|.-|.++|......|.+++++... ..++..+...+.+++.++-+-.+..+.+.+...+
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~------~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 70 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARR------VDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIA 70 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC------HHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 55555667889999999999999998876532 2334445555666666665333444444444433
No 96
>PRK07109 short chain dehydrogenase; Provisional
Probab=67.75 E-value=36 Score=33.39 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=38.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
+.+++.+++|--|.++|...+..|.+++++..... ..++....++..|++++.+..+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~--~l~~~~~~l~~~g~~~~~v~~D 65 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEE--GLEALAAEIRAAGGEALAVVAD 65 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHHcCCcEEEEEec
Confidence 35566566788999999999999999887764321 1233344566788888655543
No 97
>PRK12743 oxidoreductase; Provisional
Probab=66.88 E-value=47 Score=30.65 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=38.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
++++.+++|.-|.++|..+...|.+++++...... ..+.-...++.+|.++..+..+
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D 60 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEE-GAKETAEEVRSHGVRAEIRQLD 60 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChH-HHHHHHHHHHhcCCceEEEEcc
Confidence 45555667889999999999999999877643321 1222334666788887665543
No 98
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.58 E-value=54 Score=30.31 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=36.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+.+++.++++.-|.++|...+..|.+++++.... .+.....++..|.++..+..
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~----~~~~~~~~~~~~~~~~~~~~ 62 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE----APETQAQVEALGRKFHFITA 62 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch----HHHHHHHHHHcCCeEEEEEe
Confidence 3455556678899999999999999988764321 12223455667877754443
No 99
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=66.06 E-value=13 Score=32.32 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=30.2
Q ss_pred cCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCC
Q 017391 182 TGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGA 226 (372)
Q Consensus 182 aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA 226 (372)
-++||.|.|+|...+..|.+++++.++. +.++.++..+.
T Consensus 5 iGaG~~G~AlA~~la~~g~~V~l~~~~~------~~~~~i~~~~~ 43 (157)
T PF01210_consen 5 IGAGNWGTALAALLADNGHEVTLWGRDE------EQIEEINETRQ 43 (157)
T ss_dssp ESSSHHHHHHHHHHHHCTEEEEEETSCH------HHHHHHHHHTS
T ss_pred ECcCHHHHHHHHHHHHcCCEEEEEeccH------HHHHHHHHhCC
Confidence 4799999999999999999999997653 34445555444
No 100
>PRK08589 short chain dehydrogenase; Validated
Probab=65.38 E-value=54 Score=30.67 Aligned_cols=54 Identities=22% Similarity=0.065 Sum_probs=36.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++++.+++|--|.++|......|.+++++... . ........++..|.++..+..
T Consensus 8 ~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~--~~~~~~~~~~~~~~~~~~~~~ 61 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQEGAYVLAVDIA-E--AVSETVDKIKSNGGKAKAYHV 61 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-H--HHHHHHHHHHhcCCeEEEEEe
Confidence 45555666889999999999999998888654 2 123334455666777654443
No 101
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=65.35 E-value=28 Score=34.12 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 185 GQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 185 GN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+|.+.+++.+++++|+++++..|++-.. +.+-+..++..|++|...+.
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~-~~~~~~~~~~~G~~v~~~~d 209 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRM-PKEILEELKAKGIKVRETES 209 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccC-CHHHHHHHHHcCCEEEEECC
Confidence 5899999999999999999999987521 34445566678998865543
No 102
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=64.55 E-value=66 Score=29.51 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=36.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
+++++.+++|..|.++|......|.+++++..... ..+.....++..|.++..+..+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~i~~~~~~~~~~~~D 67 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA--KLAAAAESLKGQGLSAHALAFD 67 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCceEEEEEcc
Confidence 35555566799999999999999998776643321 1223334556667777655443
No 103
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=64.52 E-value=72 Score=29.31 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=36.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+.+++.+++|--|.++|......|.+++++-.... .......+...|.++..+..
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL---VHEVAAELRAAGGEALALTA 63 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH---HHHHHHHHHhcCCeEEEEEE
Confidence 35555566788999999999999999877654321 22333455566877754443
No 104
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=64.23 E-value=77 Score=28.98 Aligned_cols=57 Identities=14% Similarity=0.035 Sum_probs=39.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
.+++.+++|..|.++|......|.+++++..... ...+-..+++..|+++..+..++
T Consensus 9 ~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl 65 (262)
T PRK13394 9 TAVVTGAASGIGKEIALELARAGAAVAIADLNQD--GANAVADEINKAGGKAIGVAMDV 65 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEEEEeCChH--HHHHHHHHHHhcCceEEEEECCC
Confidence 4555566799999999999999999877654432 12334445667788886655543
No 105
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.95 E-value=65 Score=29.66 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=36.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+.+++.+.+|.-|.++|......|.+++++..... .+.....+...|.++..+..
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 70 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTN---WDETRRLIEKEGRKVTFVQV 70 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHHHhcCCceEEEEc
Confidence 34555566788999999999999999888765421 22223345556777654443
No 106
>PRK06139 short chain dehydrogenase; Provisional
Probab=63.84 E-value=45 Score=32.72 Aligned_cols=56 Identities=21% Similarity=0.168 Sum_probs=37.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+.+++.+.+|--|.++|...+..|.+++++..... ..++-...++..|+++..+..
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~--~l~~~~~~~~~~g~~~~~~~~ 63 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEE--ALQAVAEECRALGAEVLVVPT 63 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEe
Confidence 35555566688999999999999999877654321 123334466778888755443
No 107
>PRK06483 dihydromonapterin reductase; Provisional
Probab=63.33 E-value=87 Score=28.31 Aligned_cols=66 Identities=17% Similarity=0.029 Sum_probs=41.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHH
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWV 247 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~ 247 (372)
++++.+++|--|.++|...+..|.+++++..... .....++..|+..+.++-.-.+....+.+...
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 69 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY-----PAIDGLRQAGAQCIQADFSTNAGIMAFIDELK 69 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch-----hHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHH
Confidence 4555566788999999999999999888754321 12335556777766666433333444444433
No 108
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=63.28 E-value=55 Score=30.57 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=38.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
+.+++.+++|.-|.++|......|.+++++..... ..+.....++..|.++..+..+.
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl 68 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQE--KAEAVVAEIKAAGGEALAVKADV 68 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEECCC
Confidence 34555566789999999999999999887765322 12233345556687876555533
No 109
>PRK05993 short chain dehydrogenase; Provisional
Probab=62.86 E-value=47 Score=31.21 Aligned_cols=64 Identities=14% Similarity=0.036 Sum_probs=41.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHH
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNW 246 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~ 246 (372)
.+++.+++|.-|.++|...+..|.+++++... .+++..+...|.+++.++-+-.+.+..+.+..
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~------~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK------EEDVAALEAEGLEAFQLDYAEPESIAALVAQV 69 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC------HHHHHHHHHCCceEEEccCCCHHHHHHHHHHH
Confidence 45555667999999999999999998877533 23444555567776666653333344444443
No 110
>PRK07985 oxidoreductase; Provisional
Probab=62.84 E-value=65 Score=30.76 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=34.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++++.+++|.-|.++|......|.++++..........+.-...++..|.++..+..
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPG 107 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEc
Confidence 455556678899999999999999988764332211111222234456777755444
No 111
>PRK05693 short chain dehydrogenase; Provisional
Probab=62.66 E-value=68 Score=29.91 Aligned_cols=64 Identities=13% Similarity=0.014 Sum_probs=40.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHH
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNW 246 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~ 246 (372)
.+++.+++|--|.++|...+..|.+++++... ..+...+...|.+.+.++-.-.+....+.+..
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 66 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK------AEDVEALAAAGFTAVQLDVNDGAALARLAEEL 66 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC------HHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHH
Confidence 45555667889999999999999998876543 23344555567666666643333344444443
No 112
>PRK12828 short chain dehydrogenase; Provisional
Probab=61.92 E-value=72 Score=28.51 Aligned_cols=55 Identities=20% Similarity=0.091 Sum_probs=36.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++++.+++|--|.++|......|.+++++..... +.......+...+.+++.++-
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARGARVALIGRGAA--PLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH--hHHHHHHHHhhcCceEEEeec
Confidence 4555566789999999998888999877765322 112233445556777766554
No 113
>PRK07478 short chain dehydrogenase; Provisional
Probab=61.57 E-value=61 Score=29.74 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=36.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|......|.+++++..... ..+.-...++..|.++..+..
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 62 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVVGARRQA--ELDQLVAEIRAEGGEAVALAG 62 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEc
Confidence 4555566788999999999999999877754321 122223455667777755544
No 114
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=61.13 E-value=1.2e+02 Score=26.81 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=36.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCC-C-ccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTA-D-MEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~-~-~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
+.++.++.|..|..+|..-...+-.-+|++... . .......++.++..|++|..+..+
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~D 61 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCD 61 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccC
Confidence 345556679999999999777666555555444 2 122345778899999999766553
No 115
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=60.45 E-value=32 Score=35.36 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=37.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCC--ccccHHHHHHHHHcCCEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTAD--MEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~--~~~~~~k~~~l~~lGA~Vi~ 230 (372)
++|+. ++||.|.-+|..+.++|.++++++.... .+.....+..++..|.+++.
T Consensus 274 ~VvVI-GgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 274 SVVVI-GGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred eEEEE-CCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 44443 6899999999999999999999987642 11123334567778887753
No 116
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=60.34 E-value=1.5e+02 Score=30.30 Aligned_cols=55 Identities=18% Similarity=0.065 Sum_probs=35.2
Q ss_pred EEecCcc-hHHHHHHHHHHHcCCcEEEEEcCC-Cc-cccHHHHHHHHHcCC-EEEEEcC
Q 017391 179 VAATGAG-QHGVATAAACAKLALDCTVFMGTA-DM-EKQSSKVLLMKLLGA-QVKAVDG 233 (372)
Q Consensus 179 V~~aSsG-N~G~AvA~aa~~~Gi~~~Iv~P~~-~~-~~~~~k~~~l~~lGA-~Vi~v~~ 233 (372)
|++.|+| +|...+.+.....+++++.|.-+- -. .....-.+....+|| +++.++.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~ 59 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDA 59 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecch
Confidence 4566777 899999998888889999887431 11 122333345678999 8888886
No 117
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.08 E-value=1.1e+02 Score=28.17 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=40.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHh
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVG 248 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~ 248 (372)
.+++.+++|--|.++|......|.+++++.... +.....++..+...+.++-+-.+....+.+...+
T Consensus 9 ~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~-----~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (255)
T PRK06463 9 VALITGGTRGIGRAIAEAFLREGAKVAVLYNSA-----ENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEK 75 (255)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc-----HHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHH
Confidence 455556678899999999999999887765332 2233345544655666654333334444444433
No 118
>PRK07035 short chain dehydrogenase; Provisional
Probab=60.06 E-value=73 Score=29.09 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=34.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~ 232 (372)
.+++.+++|.-|.+++......|.+++++..... ..+.....+...|.++..+.
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLD--GCQAVADAIVAAGGKAEALA 63 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEE
Confidence 4555566789999999999999999887764321 12223334455676664443
No 119
>PRK12937 short chain dehydrogenase; Provisional
Probab=59.66 E-value=73 Score=28.81 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=37.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
.+++.+++|.-|.++|......|.+++++..... .........++..|.++..+..+
T Consensus 7 ~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D 63 (245)
T PRK12937 7 VAIVTGASRGIGAAIARRLAADGFAVAVNYAGSA-AAADELVAEIEAAGGRAIAVQAD 63 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCH-HHHHHHHHHHHhcCCeEEEEECC
Confidence 4555566789999999999999999877654322 11122334556678888666543
No 120
>PRK05866 short chain dehydrogenase; Provisional
Probab=59.51 E-value=64 Score=30.82 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=35.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|...+..|.+++++..... ..++....+...|.++..+..
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~--~l~~~~~~l~~~~~~~~~~~~ 96 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARRED--LLDAVADRITRAGGDAMAVPC 96 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEc
Confidence 4555566788999999999999999887764321 122223344455666654444
No 121
>PRK08226 short chain dehydrogenase; Provisional
Probab=59.45 E-value=70 Score=29.46 Aligned_cols=55 Identities=13% Similarity=0.017 Sum_probs=35.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+++++.+++|.-|.++|......|.+++++-.... .......+...|.++..+..
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~ 61 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPE---IEKLADELCGRGHRCTAVVA 61 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH---HHHHHHHHHHhCCceEEEEC
Confidence 45555567789999999999999999877754321 12233344455777655444
No 122
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=59.25 E-value=64 Score=30.01 Aligned_cols=64 Identities=8% Similarity=-0.123 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE--EEEcCchhHHHHHHHHHHHh
Q 017391 185 GQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV--KAVDGCFKEASSEAIRNWVG 248 (372)
Q Consensus 185 GN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V--i~v~~~~~da~~~a~~~~~~ 248 (372)
+--|.++|...+..|.++++..-.....+..+.+..++..+.++ +.++-+-.+.++.+.+...+
T Consensus 18 ~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 18 RSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred CchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence 56899999999999999877642221112334455565555444 33443323334444444433
No 123
>PRK06172 short chain dehydrogenase; Provisional
Probab=59.08 E-value=71 Score=29.21 Aligned_cols=56 Identities=27% Similarity=0.205 Sum_probs=37.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+++++.+++|.-|.++|......|.+++++..... ..+.....++..|.++..+..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAA--GGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 35555566789999999999999999877754322 122334455667877755444
No 124
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.90 E-value=51 Score=30.00 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=37.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
++++.+++|.-|.++|......|.++++++..... ..++-...++..|+++..+..+
T Consensus 6 ~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D 62 (250)
T PRK08063 6 VALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRK-AAEETAEEIEALGRKALAVKAN 62 (250)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHhcCCeEEEEEcC
Confidence 45555667899999999999999998775433221 1223334566778888666554
No 125
>PRK12744 short chain dehydrogenase; Provisional
Probab=58.69 E-value=86 Score=28.83 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=35.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCC--CccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTA--DMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~--~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|......|.+++++.... .........+.++..|.++..+..
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 68 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQA 68 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEec
Confidence 455556678899999999988999977665322 111122233445566877755544
No 126
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=58.63 E-value=83 Score=28.66 Aligned_cols=56 Identities=18% Similarity=0.055 Sum_probs=36.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
++++.+++|.-|.++|......|.+++++.... ++.+.....++..|.++..+..+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D 57 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNE--ETAKETAKEINQAGGKAVAYKLD 57 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcC
Confidence 345556678999999999999999877665332 11223334566778777555443
No 127
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=58.59 E-value=85 Score=28.53 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=35.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++++.+.+|.-|.++|......|.+++++.... .......++.++.++..+..
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~----~~~~~~~~~~~~~~~~~~~~ 59 (248)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEAGADIVGAGRSE----PSETQQQVEALGRRFLSLTA 59 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCch----HHHHHHHHHhcCCceEEEEC
Confidence 455545668899999999999999887775321 12333455667777655544
No 128
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=58.34 E-value=48 Score=31.33 Aligned_cols=80 Identities=23% Similarity=0.234 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHcCCCeEEEecCcchHHHH--HHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 158 HKINNAIGQAMIAKRMGRKSIVAATGAGQHGVA--TAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 158 fKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~A--vA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
.|..-+.+..+.++-.|.+-+-++++||..+-- .-.++.+.-.+..++|..+.- ..++...|-..||+++.|+.-+
T Consensus 137 ~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIr--s~e~A~~~~~aGAD~IVvGn~i 214 (230)
T PF01884_consen 137 DKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIR--SPEQAREMAEAGADTIVVGNAI 214 (230)
T ss_dssp SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS----SHHHHHHHHCTTSSEEEESCHH
T ss_pred CcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcC--CHHHHHHHHHCCCCEEEECCEE
Confidence 344444444445566788999999988754332 222344444678888887753 4677778999999999999865
Q ss_pred hHHH
Q 017391 236 KEAS 239 (372)
Q Consensus 236 ~da~ 239 (372)
.+-.
T Consensus 215 ee~~ 218 (230)
T PF01884_consen 215 EEDP 218 (230)
T ss_dssp HHHH
T ss_pred EEcc
Confidence 5433
No 129
>PRK06114 short chain dehydrogenase; Provisional
Probab=57.58 E-value=1e+02 Score=28.33 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=36.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|--|.++|......|.+++++...... ....-...++..|.++..+..
T Consensus 10 ~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~-~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK06114 10 VAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDD-GLAETAEHIEAAGRRAIQIAA 65 (254)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcch-HHHHHHHHHHhcCCceEEEEc
Confidence 45555667889999999999999998887654321 112333456666777755544
No 130
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=57.54 E-value=78 Score=28.05 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCcEE-EEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCCh
Q 017391 188 GVATAAACAKLALDCT-VFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPC 266 (372)
Q Consensus 188 G~AvA~aa~~~Gi~~~-Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 266 (372)
|..+.++++.+|.++. -+.+.+- ...-+..+...|-.|..++++.+. .+.+.+.+.+..++- -+.+.. +++
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl---~~~l~~~~~~~~~~ifllG~~~~~-~~~~~~~l~~~yP~l-~ivg~~---~g~ 84 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDL---FPDLLRRAEQRGKRIFLLGGSEEV-LEKAAANLRRRYPGL-RIVGYH---HGY 84 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHH---HHHHHHHHHHcCCeEEEEeCCHHH-HHHHHHHHHHHCCCe-EEEEec---CCC
Confidence 5778888888887773 2222221 223344555667788888886544 444445555544332 222322 332
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchh
Q 017391 267 PIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGS 304 (372)
Q Consensus 267 ~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG 304 (372)
- ......++.++|.+ ..||.|+|+.|+--
T Consensus 85 f------~~~~~~~i~~~I~~---~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 85 F------DEEEEEAIINRINA---SGPDIVFVGLGAPK 113 (172)
T ss_pred C------ChhhHHHHHHHHHH---cCCCEEEEECCCCH
Confidence 1 11223455555543 24899999888754
No 131
>PRK08017 oxidoreductase; Provisional
Probab=57.44 E-value=74 Score=29.03 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=35.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++++.+++|.-|.++|......|.+++++... .++++.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~------~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK------PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC------HHHhHHHHhCCCeEEEeec
Confidence 45555566999999999998899987766432 2344455667877766654
No 132
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=57.35 E-value=97 Score=28.14 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=36.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++++.+++|.-|.++|....+.|.++++..-... +..+.....++..+.++..+..
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 59 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDA-AAAEETADAVRAAGGRACVVAG 59 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhcCCcEEEEEe
Confidence 4556566788999999999999998876653321 1122334456667778765544
No 133
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=57.21 E-value=86 Score=29.03 Aligned_cols=55 Identities=16% Similarity=0.017 Sum_probs=35.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|...+..|.+++++-... +........++..|+++..+..
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 66 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKAGATIVFNDINQ--ELVDKGLAAYRELGIEAHGYVC 66 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHhcCCceEEEEc
Confidence 455556678899999999999999987763221 1122233445566877755544
No 134
>PRK05867 short chain dehydrogenase; Provisional
Probab=57.09 E-value=81 Score=28.91 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=34.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|......|.+++++..... ..+.....++..|.++..+..
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~ 65 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVAIAARHLD--ALEKLADEIGTSGGKVVPVCC 65 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHHHHHHhcCCeEEEEEc
Confidence 4555456688999999999999999877643211 122333455566777755443
No 135
>PRK12831 putative oxidoreductase; Provisional
Probab=57.05 E-value=39 Score=34.93 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=36.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCC--ccccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTAD--MEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~--~~~~~~k~~~l~~lGA~Vi 229 (372)
++|+. ++||.|.-+|..+.++|.++++++.... .+.....+..++..|.+++
T Consensus 283 ~VvVI-GgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~ 336 (464)
T PRK12831 283 KVAVV-GGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFD 336 (464)
T ss_pred eEEEE-CCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEE
Confidence 44443 6899999999999999999999987542 2222233445666787764
No 136
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=56.80 E-value=1.1e+02 Score=28.24 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=36.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|......|.++++...... +........++..|.++..+..
T Consensus 9 ~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 64 (261)
T PRK08936 9 VVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDE-EEANDVAEEIKKAGGEAIAVKG 64 (261)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHHcCCeEEEEEe
Confidence 4555566788999999999999998887755322 1122233455666888755543
No 137
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=56.73 E-value=65 Score=28.26 Aligned_cols=48 Identities=29% Similarity=0.388 Sum_probs=36.8
Q ss_pred EEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEc
Q 017391 179 VAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 179 V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~ 232 (372)
|+..++|+-|...|..+..+|.+++++ +. ...++++.+.+++..+.++
T Consensus 23 vvv~G~G~vg~gA~~~~~~lGa~v~~~--d~----~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 23 VVVTGAGRVGQGAAEIAKGLGAEVVVP--DE----RPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp EEEESTSHHHHHHHHHHHHTT-EEEEE--ES----SHHHHHHHHHTTTEESEET
T ss_pred EEEECCCHHHHHHHHHHhHCCCEEEec--cC----CHHHHHhhhcccCceEEEc
Confidence 344579999999999999999998776 22 3456778889999987774
No 138
>PRK08628 short chain dehydrogenase; Provisional
Probab=56.70 E-value=1e+02 Score=28.29 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=37.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
.+++.+++|--|.++|......|.+++++..... ...-...++..|.++..+..++
T Consensus 9 ~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~ 64 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP---DDEFAEELRALQPRAEFVQVDL 64 (258)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh---hHHHHHHHHhcCCceEEEEccC
Confidence 4555566788999999999999999888754322 1123345666787775555543
No 139
>PRK06194 hypothetical protein; Provisional
Probab=56.49 E-value=1e+02 Score=28.84 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=36.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
++++.+++|.-|.++|......|.+++++-.... ..+.....+...|.++..+..+.
T Consensus 8 ~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~ 64 (287)
T PRK06194 8 VAVITGAASGFGLAFARIGAALGMKLVLADVQQD--ALDRAVAELRAQGAEVLGVRTDV 64 (287)
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChH--HHHHHHHHHHhcCCeEEEEECCC
Confidence 4555566788999999999899998877643211 12233344555577886666544
No 140
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=56.09 E-value=1.1e+02 Score=28.12 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=35.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|...+..|.+++++-.. . .......++.+|.++..+..
T Consensus 12 ~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 64 (253)
T PRK08993 12 VAVVTGCDTGLGQGMALGLAEAGCDIVGINIV-E---PTETIEQVTALGRRFLSLTA 64 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEecCc-c---hHHHHHHHHhcCCeEEEEEC
Confidence 55555677899999999999999998765221 1 23334456667777755544
No 141
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=55.84 E-value=34 Score=30.26 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCC--CccccHHH--HHHHHHcC---CEEEEEcCchh
Q 017391 164 IGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTA--DMEKQSSK--VLLMKLLG---AQVKAVDGCFK 236 (372)
Q Consensus 164 ~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~--~~~~~~~k--~~~l~~lG---A~Vi~v~~~~~ 236 (372)
...+...++.|.+..++ ||++-..+...+..+|+.-.+++... + +..| ...++.++ .+|..|+.+..
T Consensus 133 ~~~l~~L~~~Gi~~~i~---TGD~~~~a~~~~~~lgi~~~~v~a~~~~k---P~~k~~~~~i~~l~~~~~~v~~vGDg~n 206 (215)
T PF00702_consen 133 KEALQELKEAGIKVAIL---TGDNESTASAIAKQLGIFDSIVFARVIGK---PEPKIFLRIIKELQVKPGEVAMVGDGVN 206 (215)
T ss_dssp HHHHHHHHHTTEEEEEE---ESSEHHHHHHHHHHTTSCSEEEEESHETT---THHHHHHHHHHHHTCTGGGEEEEESSGG
T ss_pred hhhhhhhhccCcceeee---ecccccccccccccccccccccccccccc---ccchhHHHHHHHHhcCCCEEEEEccCHH
Confidence 33344455667655554 47766677777889999655555554 5 4556 66777776 46899988888
Q ss_pred HHH
Q 017391 237 EAS 239 (372)
Q Consensus 237 da~ 239 (372)
|+.
T Consensus 207 D~~ 209 (215)
T PF00702_consen 207 DAP 209 (215)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 142
>PRK08643 acetoin reductase; Validated
Probab=55.75 E-value=1e+02 Score=28.20 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=35.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
.+++.+++|.-|.++|......|.+++++..... ....-...++..|.++..+..+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D 59 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEE--TAQAAADKLSKDGGKAIAVKAD 59 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEECC
Confidence 4455566788999999999999998877653321 1112223345567777655543
No 143
>PRK07454 short chain dehydrogenase; Provisional
Probab=55.42 E-value=84 Score=28.46 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=35.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|..|.++|..+...|.+++++..... ....-...++..+.++..+..
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 62 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQD--ALEALAAELRSTGVKAAAYSI 62 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhCCCcEEEEEc
Confidence 4555566799999999999999998888764321 111222234455667655544
No 144
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.27 E-value=68 Score=29.66 Aligned_cols=31 Identities=16% Similarity=-0.040 Sum_probs=22.8
Q ss_pred eEEEecCc--chHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGA--GQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSs--GN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++ +.-|.++|...++.|.++++...
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 34443434 57999999999999999887754
No 145
>PRK08303 short chain dehydrogenase; Provisional
Probab=55.04 E-value=1.1e+02 Score=29.39 Aligned_cols=57 Identities=16% Similarity=0.044 Sum_probs=35.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCC--------ccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTAD--------MEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~--------~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.++++--|.++|...+..|.+++++..... .+........++..|.+++.+..
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQV 74 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEc
Confidence 4555455677999999999999999888754311 11122333456667877755543
No 146
>PRK07890 short chain dehydrogenase; Provisional
Probab=54.89 E-value=86 Score=28.63 Aligned_cols=55 Identities=20% Similarity=0.163 Sum_probs=35.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++++.+++|--|.++|......|.+++++..... ..+.-...++..|.++..+..
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE--RLDEVAAEIDDLGRRALAVPT 61 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHHhCCceEEEec
Confidence 4555566788999999999999998877754321 112222344455777654444
No 147
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=54.81 E-value=1.1e+02 Score=27.09 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChh
Q 017391 188 GVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCP 267 (372)
Q Consensus 188 G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 267 (372)
|..+.++++.+|.+..--++..+. ...-+..+...+..|..++++-+. .+.+.+.+.++.++- .+.+.. +++-
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl--~~~ll~~~~~~~~~v~llG~~~~~-~~~~~~~l~~~yp~l-~i~g~~---~g~~ 83 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDL--MPALLELAAQKGLRVFLLGAKPEV-LEKAAERLRARYPGL-KIVGYH---HGYF 83 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHH--HHHHHHHHHHcCCeEEEECCCHHH-HHHHHHHHHHHCCCc-EEEEec---CCCC
Confidence 577888888888873333332221 122333445557888888876544 334434454444332 222322 3331
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchh
Q 017391 268 IMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGS 304 (372)
Q Consensus 268 ~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG 304 (372)
.. .--.++.+++.+ ..||.|+|+.|.--
T Consensus 84 ~~------~~~~~i~~~I~~---~~pdiv~vglG~Pk 111 (171)
T cd06533 84 GP------EEEEEIIERINA---SGADILFVGLGAPK 111 (171)
T ss_pred Ch------hhHHHHHHHHHH---cCCCEEEEECCCCH
Confidence 10 011235566543 34899999888754
No 148
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=54.51 E-value=50 Score=28.94 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHHcCCcEEEEEcCC--CccccHHHH----HHHHHcCCEEEEEcCchhHH
Q 017391 185 GQHGVATAAACAKLALDCTVFMGTA--DMEKQSSKV----LLMKLLGAQVKAVDGCFKEA 238 (372)
Q Consensus 185 GN~G~AvA~aa~~~Gi~~~Iv~P~~--~~~~~~~k~----~~l~~lGA~Vi~v~~~~~da 238 (372)
+|.+.+++.+++++|+.++++.|++ ... ...-+ ......|.+|..++ +.+++
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~-~~~e~ 70 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPP-DPEVLEKAKKNAKKNGGKITITD-DIEEA 70 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSH-HHHHHHHHHHHHHHHTTEEEEES-SHHHH
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCC-CHHHHHHHHHHHHHhCCCeEEEe-CHHHh
Confidence 7999999999999999999999987 221 11122 23455689887774 44443
No 149
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.38 E-value=1e+02 Score=27.79 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=36.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
+.+++.+++|..|.++|......|.+++++..... ........++..|.++..+..+
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D 64 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEE--NLKAVAEEVEAYGVKVVIATAD 64 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhCCeEEEEECC
Confidence 34555566789999999998889998877754322 1122233455567777655543
No 150
>PRK08862 short chain dehydrogenase; Provisional
Probab=54.25 E-value=85 Score=28.75 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=34.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV 231 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v 231 (372)
.+++.++++.-|.++|...+..|.+++++-.. . +..+...+.++..|.+++.+
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~-~-~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQD-Q-SALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCC-H-HHHHHHHHHHHhcCCCeEEE
Confidence 44444556778999999999999997775332 1 22233344566678777444
No 151
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=54.15 E-value=44 Score=28.97 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=26.5
Q ss_pred EEecCcchHHHHHHHHHHHcCCcEEEEEcCC
Q 017391 179 VAATGAGQHGVATAAACAKLALDCTVFMGTA 209 (372)
Q Consensus 179 V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~ 209 (372)
++.+++|+.|..++......|.++++++...
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSG
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCc
Confidence 4456679999999999999999999998653
No 152
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.96 E-value=1.2e+02 Score=27.42 Aligned_cols=56 Identities=20% Similarity=0.084 Sum_probs=36.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++++.+++|--|.++|......|.++++...... .........++..|.++..+..
T Consensus 8 ~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK06077 8 VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRA-EEMNETLKMVKENGGEGIGVLA 63 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCh-HHHHHHHHHHHHcCCeeEEEEe
Confidence 5555566788999999999999999877553221 1123344566777877755443
No 153
>PRK05876 short chain dehydrogenase; Provisional
Probab=53.61 E-value=95 Score=29.25 Aligned_cols=56 Identities=20% Similarity=0.089 Sum_probs=35.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
.+++.+++|--|.++|...+..|.+++++.... +...+....++..|.++..+..+
T Consensus 8 ~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~D 63 (275)
T PRK05876 8 GAVITGGASGIGLATGTEFARRGARVVLGDVDK--PGLRQAVNHLRAEGFDVHGVMCD 63 (275)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEeCC
Confidence 455556678899999999999999877654221 11222333455668777555443
No 154
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=53.29 E-value=99 Score=25.35 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHH-HcCCEEEEEcC
Q 017391 164 IGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMK-LLGAQVKAVDG 233 (372)
Q Consensus 164 ~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~-~lGA~Vi~v~~ 233 (372)
...+..|.+.+.+.+|+.+.+|+++..+|. .+...+++++.|... -.++|. .+|..-+..+.
T Consensus 6 ~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk--~RP~~pIiavt~~~~------~~r~l~l~~GV~p~~~~~ 68 (117)
T PF02887_consen 6 RAAVELAEDLNAKAIVVFTESGRTARLISK--YRPKVPIIAVTPNES------VARQLSLYWGVYPVLIEE 68 (117)
T ss_dssp HHHHHHHHHHTESEEEEE-SSSHHHHHHHH--T-TSSEEEEEESSHH------HHHHGGGSTTEEEEECSS
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHHh--hCCCCeEEEEcCcHH------HHhhhhcccceEEEEecc
Confidence 444556777788888888888998887754 346688888876543 122333 35665555554
No 155
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=53.16 E-value=1.1e+02 Score=27.78 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=36.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|......|.+++++..... .+.......++..|++++....
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNS-PRRVKWLEDQKALGFDFIASEG 60 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCCh-HHHHHHHHHHHhcCCcEEEEEc
Confidence 4455566789999999999999998776543221 1122334455667888765544
No 156
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=53.12 E-value=1e+02 Score=28.81 Aligned_cols=56 Identities=23% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHHHcCC--CeEEEecCcc---hHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCC
Q 017391 169 IAKRMGR--KSIVAATGAG---QHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGA 226 (372)
Q Consensus 169 ~a~~~g~--~~~V~~aSsG---N~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA 226 (372)
.|...|. +.+|.+.+.| -+-+|||.||++-|=+.+.++|+... ..+-...|..+|.
T Consensus 34 SAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~--~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 34 SALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQS--LSEYKKALGEAGL 94 (218)
T ss_pred HHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhh--HHHHHHHHhhccc
Confidence 4445564 3444443444 37899999999999999999998542 2344456666664
No 157
>PRK06181 short chain dehydrogenase; Provisional
Probab=53.06 E-value=1.2e+02 Score=27.88 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=35.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|..|.++|..+...|.+++++..... ........++..|.++..+..
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~ 57 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNET--RLASLAQELADHGGEALVVPT 57 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEc
Confidence 3455566789999999999899998887764321 112223345556777755544
No 158
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=52.72 E-value=40 Score=32.03 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=31.4
Q ss_pred eEEEecCcchH---HHHHHHHHHHcCCcEEEEEcCCCcccc-HHHHHHHHHcCCEE
Q 017391 177 SIVAATGAGQH---GVATAAACAKLALDCTVFMGTADMEKQ-SSKVLLMKLLGAQV 228 (372)
Q Consensus 177 ~~V~~aSsGN~---G~AvA~aa~~~Gi~~~Iv~P~~~~~~~-~~k~~~l~~lGA~V 228 (372)
++++.++.||. |.++|...+..|++|.|++++...... +....+++.+|..+
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 117 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQSSKPHYENLVTQCEDLGIPF 117 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCCCChHHHHHHHHHHHHcCCCE
Confidence 45555677763 445555566689999999965322112 33445667777654
No 159
>PRK06949 short chain dehydrogenase; Provisional
Probab=52.66 E-value=1.1e+02 Score=27.85 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=25.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
+++++.+++|.-|.++|..+...|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 355555667999999999999999987777543
No 160
>PRK07677 short chain dehydrogenase; Provisional
Probab=52.57 E-value=1.2e+02 Score=27.81 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=33.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|......|.+++++..... ..+.-...++..+.++..+..
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 57 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKE--KLEEAKLEIEQFPGQVLTVQM 57 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEe
Confidence 4455566788999999999999998777653321 112222334445666654433
No 161
>PRK06701 short chain dehydrogenase; Provisional
Probab=52.48 E-value=1.3e+02 Score=28.48 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=36.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|......|.+++++..... .........++..|.++..+..
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~-~~~~~~~~~~~~~~~~~~~~~~ 103 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGADIAIVYLDEH-EDANETKQRVEKEGVKCLLIPG 103 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcc-hHHHHHHHHHHhcCCeEEEEEc
Confidence 4555566788999999999999999877754322 1122333455666877755544
No 162
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=52.27 E-value=1.1e+02 Score=27.96 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=35.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++++.+++|..|.++|......|.+++++..... ....-...++..|.++..+..
T Consensus 13 ~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 67 (256)
T PRK06124 13 VALVTGSARGLGFEIARALAGAGAHVLVNGRNAA--TLEAAVAALRAAGGAAEALAF 67 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 4555566789999999998889998877765321 122223345566766655443
No 163
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=51.91 E-value=1.4e+02 Score=27.04 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=36.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
++++.+++|..|.++|......|.+++++...... .+.....++..|.++..+..+
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~D 61 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADLNDEA--AAAAAEALQKAGGKAIGVAMD 61 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEcC
Confidence 55555667999999999988899998887654221 222233455567777555443
No 164
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=51.81 E-value=1.3e+02 Score=27.78 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=38.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHH-HcCCEEEEEcCch--hHHHHHHHHHHHh
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMK-LLGAQVKAVDGCF--KEASSEAIRNWVG 248 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~-~lGA~Vi~v~~~~--~da~~~a~~~~~~ 248 (372)
+.+++.+++|.-|.++|......|.+++++-.. .++++.+. .+|.++..+..++ .+....+.+...+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~------~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS------AAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVA 75 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC------HHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHH
Confidence 345555667889999999999999998776422 22333333 3466665444332 3334344444433
No 165
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=51.53 E-value=60 Score=29.15 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=37.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
+++++.+.+|..|..++......|.+++++..... ........++..|.++..+..++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~ 63 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE--AAEALAAELRAAGGEARVLVFDV 63 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh--HHHHHHHHHHhcCCceEEEEccC
Confidence 35566566799999999998889999766654322 11222344556788886655544
No 166
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=50.95 E-value=1.5e+02 Score=26.49 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=37.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
.+++.+++|..|.+++......|.+++++...... ........++..+.++..+..++
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl 64 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEA-GAEALVAEIGALGGKALAVQGDV 64 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHHHHhcCCceEEEEcCC
Confidence 55565677999999999988899998777643221 11222234555677887665543
No 167
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.82 E-value=1.2e+02 Score=27.35 Aligned_cols=55 Identities=24% Similarity=0.189 Sum_probs=35.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++++.+++|--|.++|......|.+++++..... ..+.....++..|+++..+..
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE--KLEEAVAECGALGTEVRGYAA 61 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 4455566689999999999889998766654321 123333455666888755444
No 168
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=50.68 E-value=1.1e+02 Score=28.33 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=24.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.++++.-|.++|......|.+++++..
T Consensus 10 ~vlItGas~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 10 TLVISGGTRGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 5555566688999999999999999877654
No 169
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=50.54 E-value=1.3e+02 Score=27.21 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=37.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
++++.+++|.-|.+++......|.+++++..... ........++..+.++..+..++
T Consensus 8 ~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~Dl 64 (251)
T PRK12826 8 VALVTGAARGIGRAIAVRLAADGAEVIVVDICGD--DAAATAELVEAAGGKARARQVDV 64 (251)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEECCC
Confidence 4555566799999999999899998877764321 12333345566677776665544
No 170
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=50.50 E-value=58 Score=34.44 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=43.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHH
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEAS 239 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~ 239 (372)
+++|+ .+.|+.|+.+|..-...|.+++++=. .++++++++..|.+++.-+.+-.+..
T Consensus 418 ~hiiI-~G~G~~G~~la~~L~~~g~~vvvId~------d~~~~~~~~~~g~~~i~GD~~~~~~L 474 (558)
T PRK10669 418 NHALL-VGYGRVGSLLGEKLLAAGIPLVVIET------SRTRVDELRERGIRAVLGNAANEEIM 474 (558)
T ss_pred CCEEE-ECCChHHHHHHHHHHHCCCCEEEEEC------CHHHHHHHHHCCCeEEEcCCCCHHHH
Confidence 45565 47899999999999999999987732 24567788889998887777544443
No 171
>PRK07832 short chain dehydrogenase; Provisional
Probab=50.45 E-value=1e+02 Score=28.69 Aligned_cols=50 Identities=24% Similarity=0.140 Sum_probs=32.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
++++.+++|..|.++|..++..|.+++++-.... ..+.....++..|+++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~--~~~~~~~~~~~~~~~~ 51 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDAD--GLAQTVADARALGGTV 51 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCCc
Confidence 3555566788999999999999998776643321 1222234556667654
No 172
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=50.31 E-value=60 Score=31.69 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=35.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
.+++. ++|-.|..++..++..|.+++++-+... .+.|++.++.+|++.+
T Consensus 175 ~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~---~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 175 RALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDP---PDPKADIVEELGATYV 223 (355)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEe
Confidence 44443 5799999999899999998666654321 2457778899999864
No 173
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=50.28 E-value=1.6e+02 Score=26.52 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=37.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
.+++.+++|.-|.+++......|.++++++.... +..++....++..|.++..+..+.
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~ 60 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNL-HAAQEVVNLITQAGGKAFVLQADI 60 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCh-HHHHHHHHHHHhCCCeEEEEEccC
Confidence 4555566789999999999999999877654322 112333345566777775555543
No 174
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.10 E-value=1.6e+02 Score=26.78 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=36.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|......|.+++++...... ........++..+.++..+..
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~ 59 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDE-ELAATQQELRALGVEVIFFPA 59 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchh-HHHHHHHHHHhcCCceEEEEe
Confidence 45555667899999999988899988877643221 122333445556777755544
No 175
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=50.10 E-value=1.3e+02 Score=27.52 Aligned_cols=55 Identities=20% Similarity=0.130 Sum_probs=34.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|....+.|.+++++.... ...+.-...++..|.++..+..
T Consensus 11 ~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~--~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK08085 11 NILITGSAQGIGFLLATGLAEYGAEIIINDITA--ERAELAVAKLRQEGIKAHAAPF 65 (254)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHHHhcCCeEEEEec
Confidence 455556678999999999999999887764321 1112223345555767655444
No 176
>PRK12939 short chain dehydrogenase; Provisional
Probab=49.98 E-value=1.3e+02 Score=27.11 Aligned_cols=58 Identities=19% Similarity=0.168 Sum_probs=36.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
+.+++.+++|.-|.++|......|.+++++.... +..+.....++..|+++..+..++
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl 65 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLA--AEARELAAALEAAGGRAHAIAADL 65 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccC
Confidence 3455556679999999999999999877764221 112223334556677775554433
No 177
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.84 E-value=86 Score=28.09 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=37.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
++++.+++|..|.+++......|.+++++...... ..+.....++..+.++..+..++
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~ 65 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEE-AAEELVEAVEALGRRAQAVQADV 65 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHH-HHHHHHHHHHhcCCceEEEECCc
Confidence 56666677999999999999999998776654331 11112233445677776655544
No 178
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=49.72 E-value=70 Score=31.59 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCC-CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhH
Q 017391 164 IGQAMIAKRMGR-KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKE 237 (372)
Q Consensus 164 ~~~~~~a~~~g~-~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~d 237 (372)
+-++.+-.+..+ +.+|--++..--|.++-..|+.+||+.+=++.+..- .++-.++++.+||+-+..+..+.+
T Consensus 149 yrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~--ieel~~~Lk~lGA~~ViTeeel~~ 221 (354)
T KOG0025|consen 149 YRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPN--IEELKKQLKSLGATEVITEEELRD 221 (354)
T ss_pred HHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCcc--HHHHHHHHHHcCCceEecHHHhcc
Confidence 334443333333 344443222336777778899999999999876432 456667999999998887764443
No 179
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=49.68 E-value=1.3e+02 Score=27.31 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=35.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
.+++.+++|.-|.++|......|.+++++..... ..+.-...++..+.++..+..+
T Consensus 5 ~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~d 60 (250)
T TIGR03206 5 TAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNRE--AAEKVAADIRAKGGNAQAFACD 60 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH--HHHHHHHHHHhcCCcEEEEEcC
Confidence 4555566799999999999999998877754321 1122223345557667555543
No 180
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.62 E-value=1.5e+02 Score=28.32 Aligned_cols=58 Identities=24% Similarity=0.161 Sum_probs=38.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
.+++.+++|.-|.++|......|.++++.-.... ...+.....++..|.+++.+..+.
T Consensus 14 ~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~-~~~~~~~~~i~~~g~~~~~~~~Dv 71 (306)
T PRK07792 14 VAVVTGAAAGLGRAEALGLARLGATVVVNDVASA-LDASDVLDEIRAAGAKAVAVAGDI 71 (306)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEecCCch-hHHHHHHHHHHhcCCeEEEEeCCC
Confidence 4555566688999999999999998777643211 112233456677788886666543
No 181
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=49.41 E-value=2.9e+02 Score=28.32 Aligned_cols=96 Identities=19% Similarity=0.115 Sum_probs=48.4
Q ss_pred CCCcCcchhhHHHHHHHHHHHHcC-----CCeEEEecCcchHHHH--HHHHHHHcCCcEEEEEcCCCccc----------
Q 017391 151 DLNHVGAHKINNAIGQAMIAKRMG-----RKSIVAATGAGQHGVA--TAAACAKLALDCTVFMGTADMEK---------- 213 (372)
Q Consensus 151 ~~~pTGSfKdRga~~~~~~a~~~g-----~~~~V~~aSsGN~G~A--vA~aa~~~Gi~~~Iv~P~~~~~~---------- 213 (372)
..+|.|-.+.. ..++...+.+| .+.+++.++|+..|.| +|.++ ..|.+++++.-......
T Consensus 14 ~~hp~gc~~~v--~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~ 90 (398)
T PRK13656 14 TAHPVGCEANV--KEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYN 90 (398)
T ss_pred CCCCHHHHHHH--HHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccch
Confidence 44566654432 44444444443 2455554555667777 56667 78998777752211000
Q ss_pred cHHHHHHHHHcCCEEEEE--cCchhHHHHHHHHHHHhc
Q 017391 214 QSSKVLLMKLLGAQVKAV--DGCFKEASSEAIRNWVGN 249 (372)
Q Consensus 214 ~~~k~~~l~~lGA~Vi~v--~~~~~da~~~a~~~~~~~ 249 (372)
...-...++.+|..+..+ +-.-++..+.+.+...++
T Consensus 91 ~~a~~~~a~~~G~~a~~i~~DVss~E~v~~lie~I~e~ 128 (398)
T PRK13656 91 SAAFDKFAKAAGLYAKSINGDAFSDEIKQKVIELIKQD 128 (398)
T ss_pred HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 011123456678775444 333344444555554444
No 182
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=49.24 E-value=81 Score=31.08 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=39.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHH----HHcCCEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLM----KLLGAQVKAVDG 233 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l----~~lGA~Vi~v~~ 233 (372)
.+++..+-+.|-+.++-.+|+++|+++.|..|++.-.. ++-+... +..|+.|..++.
T Consensus 154 ~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~-~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 154 LKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPD-PEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred cEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcC-HHHHHHHHHHHHhcCCeEEEecC
Confidence 35555544467999999999999999999999975432 2222222 334888877764
No 183
>PRK07791 short chain dehydrogenase; Provisional
Probab=48.58 E-value=1.5e+02 Score=28.07 Aligned_cols=57 Identities=18% Similarity=0.044 Sum_probs=35.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCC-------CccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTA-------DMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~-------~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.++++--|.++|..++..|.+++++.... ..+........++..|.++..+..
T Consensus 8 ~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 71 (286)
T PRK07791 8 VVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGD 71 (286)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeC
Confidence 445556667899999999999999987764321 001122333455566877755544
No 184
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.49 E-value=1.7e+02 Score=29.77 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=42.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHH-HHHHcCCEEEEEcCchhHHHHHHHHHHHh
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVL-LMKLLGAQVKAVDGCFKEASSEAIRNWVG 248 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~-~l~~lGA~Vi~v~~~~~da~~~a~~~~~~ 248 (372)
.+++.+++|.-|.++|...+..|.+++++..... .+++. ....+++.++.++-+-.+....+.+...+
T Consensus 212 ~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~----~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 280 (450)
T PRK08261 212 VALVTGAARGIGAAIAEVLARDGAHVVCLDVPAA----GEALAAVANRVGGTALALDITAPDAPARIAEHLAE 280 (450)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCcc----HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 4555556688999999999999999887754322 22222 33456777777765444444444444433
No 185
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=48.21 E-value=1.5e+02 Score=26.80 Aligned_cols=58 Identities=22% Similarity=0.173 Sum_probs=37.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
+++++.+++|--|.++|......|.+++++..... ...++-...++..|.++..+..+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~D 64 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK-EAAENLVNELGKEGHDVYAVQAD 64 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH-HHHHHHHHHHHhcCCeEEEEECC
Confidence 35555566789999999998889998876543221 11222234556678888666543
No 186
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=48.09 E-value=1.5e+02 Score=27.12 Aligned_cols=56 Identities=21% Similarity=0.111 Sum_probs=35.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+.+++.+++|.-|.++|......|.+++++..... ..+.-..+++..|.++..+..
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~--~~~~~~~~l~~~~~~~~~~~~ 67 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINAD--AANHVVDEIQQLGGQAFACRC 67 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEc
Confidence 45555566788999999999999999887754322 111222344556766644433
No 187
>PRK08278 short chain dehydrogenase; Provisional
Probab=48.05 E-value=1.9e+02 Score=26.98 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=36.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccc-----cHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEK-----QSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~-----~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|--|.++|......|.+++++........ ..+-...++..|.+++.+..
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (273)
T PRK08278 8 TLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVG 69 (273)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEe
Confidence 4555566688999999999999999888875432110 11122345667887755544
No 188
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=47.84 E-value=1.3e+02 Score=29.57 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=33.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
+.+++. ++|..|.+++..++.+|...++.+-. ..+++..++.+|+..+.
T Consensus 189 ~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~-----~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 189 STVAIF-GLGAVGLAVAEGARIRGASRIIGVDL-----NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC-----CHHHHHHHHHcCCceEE
Confidence 344444 57999999988999999843343322 24567788999986543
No 189
>PRK07063 short chain dehydrogenase; Provisional
Probab=47.23 E-value=1.6e+02 Score=26.97 Aligned_cols=55 Identities=22% Similarity=0.108 Sum_probs=33.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHH--cCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKL--LGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~--lGA~Vi~v~~ 233 (372)
.+++.+++|--|.++|......|.+++++..... ..+.....++. .+.++..+..
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~ 65 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDAA--LAERAAAAIARDVAGARVLAVPA 65 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhccCCceEEEEEc
Confidence 4555566688999999999999999877654321 12222334444 4666654443
No 190
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=46.90 E-value=2.9e+02 Score=28.39 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=24.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+.+|+ ++|-.|.+.|..+++.|.+|+++-.
T Consensus 4 DviII--G~G~aGl~aA~~la~~g~~v~vi~~ 33 (422)
T PRK05329 4 DVLVI--GGGLAGLTAALAAAEAGKRVALVAK 33 (422)
T ss_pred CEEEE--CccHHHHHHHHHHHHCCCcEEEEEC
Confidence 34444 6899999999999999999999863
No 191
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=46.80 E-value=1.1e+02 Score=28.67 Aligned_cols=48 Identities=27% Similarity=0.292 Sum_probs=34.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
.+++. ++|-.|.+++..|+.+|.+.++.+. . ...|....+.+|++.+.
T Consensus 123 ~VlV~-G~G~vG~~~~~~ak~~G~~~Vi~~~--~---~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 123 RVLVV-GAGMLGLTAAAAAAAAGAARVVAAD--P---SPDRRELALSFGATALA 170 (280)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--C---CHHHHHHHHHcCCcEec
Confidence 44443 5788999999999999998555542 1 34577788899996543
No 192
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=46.67 E-value=1.7e+02 Score=25.79 Aligned_cols=57 Identities=19% Similarity=0.401 Sum_probs=29.8
Q ss_pred CeEEEecCcchHH-HHHHH--HHHHcCCcEEEEE--cCCCc-cccHHHHHHHHHcCCEEEEEc
Q 017391 176 KSIVAATGAGQHG-VATAA--ACAKLALDCTVFM--GTADM-EKQSSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 176 ~~~V~~aSsGN~G-~AvA~--aa~~~Gi~~~Iv~--P~~~~-~~~~~k~~~l~~lGA~Vi~v~ 232 (372)
..+++.+++||.| -+++. ..+..|++++|+. |.... ...+.+.+.++.+|..++...
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 88 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELD 88 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSC
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeecc
Confidence 4555556788643 34443 3555899999854 32221 123345556677776665443
No 193
>CHL00194 ycf39 Ycf39; Provisional
Probab=46.60 E-value=79 Score=30.46 Aligned_cols=31 Identities=6% Similarity=0.142 Sum_probs=25.6
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
+++.+++|..|..++......|.+++++...
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 4555667999999999988899999888754
No 194
>PRK05650 short chain dehydrogenase; Provisional
Probab=46.55 E-value=1.5e+02 Score=27.45 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=37.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
++++.+++|.-|.++|......|.+++++..... ..+.....++..|.++..+..+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D 57 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEE--GGEETLKLLREAGGDGFYQRCD 57 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEcc
Confidence 3555566789999999999999999887764322 1233334566667777555443
No 195
>PRK07814 short chain dehydrogenase; Provisional
Probab=46.05 E-value=1.5e+02 Score=27.46 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=38.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEE--cCchhHHHHHHHHH
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV--DGCFKEASSEAIRN 245 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v--~~~~~da~~~a~~~ 245 (372)
+++++.+++|--|.++|......|.+++++..... ........++..|..+..+ +-+-.+....+.+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTES--QLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 34555566788999999998889998877764321 1122223444456666444 33333334344443
No 196
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=45.92 E-value=1.5e+02 Score=27.24 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=23.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+++.+++|.-|.++|...+..|.+++++..
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 455566788999999999999998777643
No 197
>PRK09291 short chain dehydrogenase; Provisional
Probab=45.70 E-value=62 Score=29.59 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=36.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhH
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKE 237 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~d 237 (372)
++++.+++|.-|.+++......|.+++++..... ....-.......|.++..+..++.+
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~ 62 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAP--QVTALRAEAARRGLALRVEKLDLTD 62 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcceEEEeeCCC
Confidence 4555566799999999999999999888765321 0111122334456666555544444
No 198
>PRK07806 short chain dehydrogenase; Provisional
Probab=45.70 E-value=2.1e+02 Score=25.91 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=35.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++++.+++|--|.+++......|.+++++..... ...+.-...++..|.++..+..
T Consensus 8 ~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~ 63 (248)
T PRK07806 8 TALVTGSSRGIGADTAKILAGAGAHVVVNYRQKA-PRANKVVAEIEAAGGRASAVGA 63 (248)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCch-HhHHHHHHHHHhcCCceEEEEc
Confidence 4555566788999999999889999887754321 1111122345556777755554
No 199
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=45.61 E-value=1.6e+02 Score=27.02 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=36.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
+.+++.+++|.-|.++|......|.+++++..... ........++..|.++..+..++
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~i~~~~~~~~~~~~Dl 70 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAE--ELEEAAAHLEALGIDALWIAADV 70 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEccC
Confidence 34555566788999999998889998766643211 11122234456677876665544
No 200
>PRK06138 short chain dehydrogenase; Provisional
Probab=45.47 E-value=1.6e+02 Score=26.62 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=34.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
++++.+++|--|.++|......|.+++++..... ........++ .|.++..+..+
T Consensus 7 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~-~~~~~~~~~~D 61 (252)
T PRK06138 7 VAIVTGAGSGIGRATAKLFAREGARVVVADRDAE--AAERVAAAIA-AGGRAFARQGD 61 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHH--HHHHHHHHHh-cCCeEEEEEcC
Confidence 5555566789999999998889988777653321 1222223333 57777555443
No 201
>PRK07062 short chain dehydrogenase; Provisional
Probab=44.64 E-value=2.1e+02 Score=26.33 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=25.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
.+++.+++|.-|.++|......|.+++++...
T Consensus 10 ~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 10 VAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 45555667889999999999999998777653
No 202
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=44.62 E-value=2e+02 Score=25.97 Aligned_cols=57 Identities=16% Similarity=0.029 Sum_probs=36.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
.+++.+++|-.|.+++......|.+++++..... ..+.-...++..+.++..+..++
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~ 59 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEA--GAEAAAKVATDAGGSVIYLVADV 59 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEECCC
Confidence 4555556789999999998889998888765422 11222223445677776665543
No 203
>PRK07326 short chain dehydrogenase; Provisional
Probab=44.59 E-value=1.5e+02 Score=26.52 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=25.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
..+++.+++|..|.++|......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 34555566799999999998889999777653
No 204
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=44.47 E-value=39 Score=25.15 Aligned_cols=25 Identities=44% Similarity=0.478 Sum_probs=21.3
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++|=.|.+.|+..++.|.+++|+=-
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEES
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEec
Confidence 5899999999999999999998843
No 205
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=44.44 E-value=42 Score=35.57 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=36.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCc---------------cccHHHHHHHHHcCCEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADM---------------EKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~---------------~~~~~k~~~l~~lGA~Vi~ 230 (372)
.+++ -++|-.|.++|..+++.|.+++|+=..... +....++..++.+|+++..
T Consensus 139 ~V~V-IGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 139 RVAV-IGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred EEEE-ECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4444 368999999999999999998776321110 0124566778889998743
No 206
>PRK06057 short chain dehydrogenase; Provisional
Probab=44.04 E-value=2.2e+02 Score=26.03 Aligned_cols=64 Identities=17% Similarity=0.015 Sum_probs=37.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHH-HHHHcCCEEEEEcCchhHHHHHHHHHH
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVL-LMKLLGAQVKAVDGCFKEASSEAIRNW 246 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~-~l~~lGA~Vi~v~~~~~da~~~a~~~~ 246 (372)
++++.+++|.-|.++|......|.+++++.... .+.. ....++..++.++-+-.+....+.+..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVGDIDP------EAGKAAADEVGGLFVPTDVTDEDAVNALFDTA 73 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHH
Confidence 455556678999999999999999987774321 1221 223345556665543333343444433
No 207
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=43.85 E-value=1.9e+02 Score=25.88 Aligned_cols=32 Identities=9% Similarity=-0.085 Sum_probs=25.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
.+++.+++|.-|.++|......|.+++++...
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 45555667899999999988889988777654
No 208
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=43.73 E-value=87 Score=29.21 Aligned_cols=51 Identities=10% Similarity=0.165 Sum_probs=34.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHc-CCEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLL-GAQV 228 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~l-GA~V 228 (372)
++++. ++|+.|.-+|...+..+.+++++.+.......+.-...++.. |.++
T Consensus 143 ~v~Vi-G~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~ 194 (300)
T TIGR01292 143 EVAVV-GGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEF 194 (300)
T ss_pred EEEEE-CCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEE
Confidence 44443 689999999999988999999998765432223333455554 5444
No 209
>PRK08265 short chain dehydrogenase; Provisional
Probab=43.73 E-value=2e+02 Score=26.60 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=33.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+.+++.+++|--|.++|......|.+++++-.... ......+.+|.++..+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~ 59 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD-----NGAAVAASLGERARFIAT 59 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHhCCeeEEEEe
Confidence 35555566788999999999999998877643211 111123345766655444
No 210
>PRK07775 short chain dehydrogenase; Provisional
Probab=43.69 E-value=2.1e+02 Score=26.63 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=36.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+.+++.+++|--|.++|......|.+++++..... ..+.-...++..|+++..+..
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 66 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVE--KCEELVDKIRADGGEAVAFPL 66 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEC
Confidence 35566566789999999999889998777654321 122222345566888765554
No 211
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=43.63 E-value=65 Score=34.32 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=31.9
Q ss_pred eEEEecCcchHH---HHHHHHHHHcCCcEEEEEcCCCcccc-HHHHHHHHHcCCEE
Q 017391 177 SIVAATGAGQHG---VATAAACAKLALDCTVFMGTADMEKQ-SSKVLLMKLLGAQV 228 (372)
Q Consensus 177 ~~V~~aSsGN~G---~AvA~aa~~~Gi~~~Iv~P~~~~~~~-~~k~~~l~~lGA~V 228 (372)
++++.++.||.| .++|...+..|++|+|++|....... ...+.+++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 555557788743 34444455689999999987432211 12455677777654
No 212
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=43.11 E-value=1.7e+02 Score=26.23 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=35.3
Q ss_pred EEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 179 VAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 179 V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
++.+++|.-|.++|......|.+++++..... +........++..|.++..+..+
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~D 56 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGR-SDAESVVSAIQAQGGNARLLQFD 56 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHHcCCeEEEEEcc
Confidence 34456788999999999999999877754322 11222334556668787555543
No 213
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.61 E-value=1.8e+02 Score=26.72 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHcCCcEEEEEcC----C-----CccccHHHHHHHHHcCCEEEEEcCch--hHHHHHHHHHHHh
Q 017391 185 GQHGVATAAACAKLALDCTVFMGT----A-----DMEKQSSKVLLMKLLGAQVKAVDGCF--KEASSEAIRNWVG 248 (372)
Q Consensus 185 GN~G~AvA~aa~~~Gi~~~Iv~P~----~-----~~~~~~~k~~~l~~lGA~Vi~v~~~~--~da~~~a~~~~~~ 248 (372)
+.-|.++|......|.++++.... . ...........++..|.++..+..++ .+....+...+.+
T Consensus 18 ~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~~~~~~~ 92 (256)
T PRK12859 18 DGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKELLNKVTE 92 (256)
T ss_pred CChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 378999999999999998776321 0 00101122344667788886554432 3334444444433
No 214
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=42.30 E-value=70 Score=31.65 Aligned_cols=61 Identities=21% Similarity=0.149 Sum_probs=41.8
Q ss_pred HHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 169 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 169 ~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++...|.+..|.+ +||..+.-+|..+...+=.-.|++|.-. -......+...|++++.|+-
T Consensus 34 ~a~~~g~~~~~~~-~sgt~Al~~al~~l~~~~gdeVi~p~~t---~~~~~~ai~~~G~~pv~~Di 94 (363)
T PF01041_consen 34 FAEYFGVKYAVAV-SSGTSALHLALRALGLGPGDEVIVPAYT---FPATASAILWAGAEPVFVDI 94 (363)
T ss_dssp HHHHHTSSEEEEE-SSHHHHHHHHHHHTTGGTTSEEEEESSS----THHHHHHHHTT-EEEEE-B
T ss_pred HHHHhCCCeEEEe-CChhHHHHHHHHhcCCCcCceEecCCCc---chHHHHHHHHhccEEEEEec
Confidence 3445677777774 6898888888887443333677788765 34556688899999998875
No 215
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=42.08 E-value=93 Score=29.80 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=34.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
+++++.+.+|--|.+++..|+..|.++++... ..++...++.+|++.+.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~------s~~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG------SDEKVAYLKKLGFDVAF 188 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC------CHHHHHHHHHcCCCEEE
Confidence 35555444688999999999999998665543 23567788889986543
No 216
>PRK09242 tropinone reductase; Provisional
Probab=41.89 E-value=1.9e+02 Score=26.35 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=34.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHc--CCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLL--GAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~l--GA~Vi~v~~~ 234 (372)
.+++.+++|.-|.++|......|.+++++..... ........++.. +.++..+..+
T Consensus 11 ~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D 68 (257)
T PRK09242 11 TALITGASKGIGLAIAREFLGLGADVLIVARDAD--ALAQARDELAEEFPEREVHGLAAD 68 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhhCCCCeEEEEECC
Confidence 4455466789999999999999999877764321 112222233333 6677655543
No 217
>PRK06198 short chain dehydrogenase; Provisional
Probab=41.85 E-value=2e+02 Score=26.25 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=34.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|......|.+.++++.... .........++..|.++..+..
T Consensus 8 ~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~ 63 (260)
T PRK06198 8 VALVTGGTQGLGAAIARAFAERGAAGLVICGRNA-EKGEAQAAELEALGAKAVFVQA 63 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH-HHHHHHHHHHHhcCCeEEEEEc
Confidence 4555566788999999999999999444443321 1112223355667888755444
No 218
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.81 E-value=2.4e+02 Score=25.83 Aligned_cols=50 Identities=10% Similarity=-0.031 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHcCCcEEEEEcCCC---------ccccHHHHHHHHHcCCEEEEEcCc
Q 017391 185 GQHGVATAAACAKLALDCTVFMGTAD---------MEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 185 GN~G~AvA~aa~~~Gi~~~Iv~P~~~---------~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
|.-|.++|...+..|.+++++..... ......-...++.+|.+++.+..+
T Consensus 17 ~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 75 (256)
T PRK12748 17 NGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEID 75 (256)
T ss_pred CCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECC
Confidence 46999999998889998877754310 000111123455668788666554
No 219
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=41.77 E-value=2e+02 Score=26.15 Aligned_cols=52 Identities=6% Similarity=0.012 Sum_probs=33.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHH-HHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLM-KLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l-~~lGA~Vi~v~~~ 234 (372)
++++.+++|..|.++|..+...|.+++++... ..++..+ ..+|.++..+..+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~------~~~~~~~~~~~~~~~~~~~~D 54 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRR------QERLQELKDELGDNLYIAQLD 54 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC------HHHHHHHHHHhccceEEEEec
Confidence 34555667999999999999999998776432 1222222 2346666555443
No 220
>PRK07774 short chain dehydrogenase; Provisional
Probab=41.69 E-value=2.1e+02 Score=25.86 Aligned_cols=32 Identities=25% Similarity=0.130 Sum_probs=25.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
++++.+++|--|.++|......|.+++++...
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 45555667899999999999999998877543
No 221
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=41.53 E-value=2.4e+02 Score=25.19 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=35.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
.+++.+++|.-|.++|......|.+++++..... .........+...+.++..+..++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~ 59 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNE-ERAEAWLQEQGALGFDFRVVEGDV 59 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhhCCceEEEEecC
Confidence 3445466789999999999999998877654221 111112223445566775555433
No 222
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=41.39 E-value=1.8e+02 Score=28.65 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=33.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
+.+++. ++|--|.+++..|+.+|.+.+|.+-. .++++..++.+|++.+.
T Consensus 187 ~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~~~-----~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 187 DTVAVF-GLGGIGLSVIQGARMAKASRIIAIDI-----NPAKFELAKKLGATDCV 235 (368)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC-----CHHHHHHHHHhCCCeEE
Confidence 344443 57999999998999999953443321 34567788889986533
No 223
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.37 E-value=1.8e+02 Score=27.29 Aligned_cols=21 Identities=10% Similarity=-0.072 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHcCCcEEEEE
Q 017391 186 QHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 186 N~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
.-|.++|...+..|.+++++.
T Consensus 20 GIG~aiA~~la~~Ga~V~~~~ 40 (271)
T PRK06505 20 SIAWGIAKQLAAQGAELAFTY 40 (271)
T ss_pred cHHHHHHHHHHhCCCEEEEec
Confidence 689999999999999988764
No 224
>PRK06953 short chain dehydrogenase; Provisional
Probab=41.30 E-value=2.3e+02 Score=25.29 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=36.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHH
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEAS 239 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~ 239 (372)
.+++.+++|.-|.++|......|.+++++... .++...++..+.+++.++-+-.+..
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~------~~~~~~~~~~~~~~~~~D~~~~~~v 59 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD------AAALAALQALGAEALALDVADPASV 59 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC------HHHHHHHHhccceEEEecCCCHHHH
Confidence 45555667899999999888889998776533 2234455556766655554333333
No 225
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=41.24 E-value=1.7e+02 Score=23.25 Aligned_cols=50 Identities=22% Similarity=0.192 Sum_probs=35.3
Q ss_pred cCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhH
Q 017391 182 TGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKE 237 (372)
Q Consensus 182 aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~d 237 (372)
.+.|..|..++......+.+++++-. .+++...++..|.+++.-+.+-.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~------d~~~~~~~~~~~~~~i~gd~~~~~ 53 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDR------DPERVEELREEGVEVIYGDATDPE 53 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEES------SHHHHHHHHHTTSEEEES-TTSHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEEC------CcHHHHHHHhcccccccccchhhh
Confidence 36899999999998887778888753 245677888889777665543333
No 226
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=41.18 E-value=2.6e+02 Score=24.82 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=23.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
.++++.+++|..|.++|......|.+++++-
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~ 59 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVG 59 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 3555555569999999999888888777664
No 227
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=41.13 E-value=1.4e+02 Score=26.97 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=39.1
Q ss_pred HHHcCCCeEEEecCcchHHHHHHHH-HHHcCCcEEEEEcCCCcc---ccHHHHHHHHHcCCEE
Q 017391 170 AKRMGRKSIVAATGAGQHGVATAAA-CAKLALDCTVFMGTADME---KQSSKVLLMKLLGAQV 228 (372)
Q Consensus 170 a~~~g~~~~V~~aSsGN~G~AvA~a-a~~~Gi~~~Iv~P~~~~~---~~~~k~~~l~~lGA~V 228 (372)
.++.|.+++|+++-..|.++..... +...|++++|+....... .....+..|+..|++|
T Consensus 133 L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i 195 (196)
T cd01011 133 LRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVL 195 (196)
T ss_pred HHHCCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEE
Confidence 3467888888876668888755444 666999998887543221 1234466677778776
No 228
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=41.12 E-value=1e+02 Score=31.27 Aligned_cols=28 Identities=39% Similarity=0.502 Sum_probs=25.9
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcCCC
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGTAD 210 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~~~ 210 (372)
++|+.|+-+|.+++++|++++++-|...
T Consensus 8 GGGQLgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 8 GGGQLGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred cCcHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 6899999999999999999999998755
No 229
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.04 E-value=2.2e+02 Score=25.50 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=35.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCch
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
.+++.+++|.-|.++|......|.++++++.... .........+...+.++..+..++
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~ 64 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE-EAAQELLEEIKEEGGDAIAVKADV 64 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHhcCCeEEEEECCC
Confidence 5566566799999999998889999877743321 111122223444566775555543
No 230
>PRK07060 short chain dehydrogenase; Provisional
Probab=40.83 E-value=2.2e+02 Score=25.60 Aligned_cols=51 Identities=18% Similarity=0.110 Sum_probs=33.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHH-HHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLM-KLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l-~~lGA~Vi~v~~ 233 (372)
++++.+++|.-|.++|..++..|.+++++.... ++...+ ...+.+++.++-
T Consensus 11 ~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~------~~~~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 11 SVLVTGASSGIGRACAVALAQRGARVVAAARNA------AALDRLAGETGCEPLRLDV 62 (245)
T ss_pred EEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHHhCCeEEEecC
Confidence 555556678999999999999999877765431 222222 344677666554
No 231
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=40.57 E-value=95 Score=34.20 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=36.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCc-EEEEEcCCC--ccccHHHHHHHHHcCCEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALD-CTVFMGTAD--MEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~-~~Iv~P~~~--~~~~~~k~~~l~~lGA~Vi~ 230 (372)
++|+. ++||+|.-+|..+.++|.+ +++++.... .+.....+..++..|.+++.
T Consensus 572 ~VvVI-GgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~ 627 (752)
T PRK12778 572 KVAVV-GGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLT 627 (752)
T ss_pred cEEEE-CCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 44443 6899999999999999998 999987542 11122333456777877643
No 232
>PRK05717 oxidoreductase; Validated
Probab=40.57 E-value=2.5e+02 Score=25.60 Aligned_cols=53 Identities=13% Similarity=-0.012 Sum_probs=33.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
++++.+++|.-|.++|......|.+++++..... ......+.++.++..+..+
T Consensus 12 ~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~D 64 (255)
T PRK05717 12 VALVTGAARGIGLGIAAWLIAEGWQVVLADLDRE-----RGSKVAKALGENAWFIAMD 64 (255)
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHH-----HHHHHHHHcCCceEEEEcc
Confidence 5555566799999999999999998877643211 1112334456666555543
No 233
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=40.38 E-value=1.9e+02 Score=28.36 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=33.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
+++++. ++|.-|.+++..|+.+|.+.++.+.. .++|+..++.+|++.+.
T Consensus 188 ~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~-----~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 188 STVAVF-GLGAVGLAVIQGAKAAGASRIIGIDI-----NPDKFELAKKFGATDCV 236 (368)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHHHHcCCCEEE
Confidence 344444 57999999999999999954444422 24566777889986543
No 234
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.29 E-value=1.3e+02 Score=27.09 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=25.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
.+++.+++|..|.++|......|.+++++...
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 55555667999999999999999997776543
No 235
>PRK06924 short chain dehydrogenase; Provisional
Probab=40.02 E-value=1.5e+02 Score=27.00 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=25.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
.+++.+++|.-|.++|......|.+++++...
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRT 34 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCC
Confidence 45555667899999999998999998777543
No 236
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=39.89 E-value=2.1e+02 Score=26.19 Aligned_cols=31 Identities=13% Similarity=-0.054 Sum_probs=24.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++|--|.++|...+..|.+++++..
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~~~r 38 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVIADI 38 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 4555566788999999999999999877743
No 237
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.87 E-value=2.2e+02 Score=26.73 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHcCCcEEEEE
Q 017391 185 GQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 185 GN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
+.-|.++|..++..|.++++..
T Consensus 22 ~GIG~aia~~la~~G~~V~l~~ 43 (272)
T PRK08159 22 RSIAWGIAKACRAAGAELAFTY 43 (272)
T ss_pred CcHHHHHHHHHHHCCCEEEEEc
Confidence 5699999999999999987664
No 238
>PRK06123 short chain dehydrogenase; Provisional
Probab=39.74 E-value=2.4e+02 Score=25.45 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=34.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|......|..+++..... ....+.....++..|.+++.+..
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 59 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLRN-RDAAEAVVQAIRRQGGEALAVAA 59 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCCC-HHHHHHHHHHHHhCCCcEEEEEe
Confidence 455556668899999999888998766554221 11122233446667777655544
No 239
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=39.71 E-value=3.8e+02 Score=26.42 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=37.3
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHH-cCCEEEEEcC
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKL-LGAQVKAVDG 233 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~-lGA~Vi~v~~ 233 (372)
.|+..++|.-|..++..++.+|-..+|++.. ...+++..+. .|+.++.-..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~-----~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDR-----SPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCC-----CHHHHHHHHHhCCCeEeecCc
Confidence 4444689999999988899999999988833 3466667766 6677654443
No 240
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=39.33 E-value=2.6e+02 Score=24.41 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=22.3
Q ss_pred cCCCeEEEecCc--chHHHHHHHHHHHcCCcEEEEE
Q 017391 173 MGRKSIVAATGA--GQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 173 ~g~~~~V~~aSs--GN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
.+....|+..++ ||.-.+++.+....++++++++
T Consensus 56 ~~~~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 56 AGKKPAILMQSSGLGNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred hcCCcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEE
Confidence 344444444555 5666666555557999999999
No 241
>PRK09134 short chain dehydrogenase; Provisional
Probab=38.97 E-value=2.8e+02 Score=25.37 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=35.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
++++.+++|.-|.++|..+...|.+++++..... +....-...++..|.++..+..+
T Consensus 11 ~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D 67 (258)
T PRK09134 11 AALVTGAARRIGRAIALDLAAHGFDVAVHYNRSR-DEAEALAAEIRALGRRAVALQAD 67 (258)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhcCCeEEEEEcC
Confidence 4555566789999999999999998887654321 11111222444557887655543
No 242
>PRK07825 short chain dehydrogenase; Provisional
Probab=38.97 E-value=2.1e+02 Score=26.52 Aligned_cols=30 Identities=30% Similarity=0.248 Sum_probs=23.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
.+++.+++|.-|.++|......|.+++++.
T Consensus 7 ~ilVtGasggiG~~la~~l~~~G~~v~~~~ 36 (273)
T PRK07825 7 VVAITGGARGIGLATARALAALGARVAIGD 36 (273)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEE
Confidence 455556678899999999888999977664
No 243
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.93 E-value=2.3e+02 Score=26.28 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHH-HcCCEE-EEEcCchhHHHHHHHHHHHh
Q 017391 186 QHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMK-LLGAQV-KAVDGCFKEASSEAIRNWVG 248 (372)
Q Consensus 186 N~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~-~lGA~V-i~v~~~~~da~~~a~~~~~~ 248 (372)
--|.++|...+..|.++++.... . ...+.+..+. .+|... +.++-+-.+.+..+.+...+
T Consensus 21 GIG~a~a~~la~~G~~v~~~~r~-~--~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (260)
T PRK06603 21 SISWAIAQLAKKHGAELWFTYQS-E--VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKE 82 (260)
T ss_pred chHHHHHHHHHHcCCEEEEEeCc-h--HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHH
Confidence 37888888888899988776432 1 1223344443 336443 34443333334444444444
No 244
>PRK08251 short chain dehydrogenase; Provisional
Probab=38.74 E-value=2.6e+02 Score=25.27 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=24.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++|.-|.++|......|.+++++..
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r 34 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCAR 34 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 4555566789999999998889988776654
No 245
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=38.69 E-value=1e+02 Score=32.30 Aligned_cols=45 Identities=31% Similarity=0.458 Sum_probs=33.9
Q ss_pred EecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 180 AATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 180 ~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.--|||-.|.++|.+++..|-+++++....... .-.|.+++.|+.
T Consensus 277 tN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~---------~p~~v~~i~V~t 321 (475)
T PRK13982 277 ANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA---------DPQGVKVIHVES 321 (475)
T ss_pred CCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC---------CCCCceEEEecC
Confidence 334789999999999999999999998543321 125678888875
No 246
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=38.62 E-value=1e+02 Score=31.87 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=38.0
Q ss_pred eEEEecCc--chHHHHHHHHHHH-cCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGA--GQHGVATAAACAK-LALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSs--GN~G~AvA~aa~~-~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+++.++-. +|.+.+++.+++. +|++++++.|++-.. +..-+..++..|++|..++.
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~-~~~~~~~~~~~G~~v~~~~d 301 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEM-PAYIVEQISRNGHVIEQTDD 301 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCcccc-CHHHHHHHHhcCCeEEEEcC
Confidence 44444322 5899999999776 599999999987521 33444556667888766543
No 247
>PRK07201 short chain dehydrogenase; Provisional
Probab=38.24 E-value=1.8e+02 Score=31.02 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=36.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
.+++.+++|.-|.++|...+..|.+++++..... ..++....++..|.++..+..+
T Consensus 373 ~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D 428 (657)
T PRK07201 373 VVLITGASSGIGRATAIKVAEAGATVFLVARNGE--ALDELVAEIRAKGGTAHAYTCD 428 (657)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEec
Confidence 4555566788999999998889998888764321 1222333455567777555543
No 248
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=38.22 E-value=1.2e+02 Score=30.93 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=36.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCC-cEEEEEcCCC--ccccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLAL-DCTVFMGTAD--MEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi-~~~Iv~P~~~--~~~~~~k~~~l~~lGA~Vi 229 (372)
++++. ++|+.|.-+|..+.+.|. +++++..... .+.....+..++..|.+++
T Consensus 275 ~VvVi-GgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~ 329 (457)
T PRK11749 275 RVVVI-GGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFE 329 (457)
T ss_pred eEEEE-CCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEE
Confidence 44443 689999999999999998 7888886432 1112333456777887775
No 249
>PRK05854 short chain dehydrogenase; Provisional
Probab=38.19 E-value=2.5e+02 Score=27.02 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=23.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+|+.++++--|.++|...++.|.+++++..
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 4555455677888999888889998877754
No 250
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=38.18 E-value=1.2e+02 Score=29.03 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=34.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV 231 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v 231 (372)
..+|...++|-.|.+++..|+.+|.++++..+ ...+...++.+|++-+..
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~------~~~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR------RKEQVDLLKKIGAEYVLN 194 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC------CHHHHHHHHHcCCcEEEE
Confidence 34443245788999988889999998655432 235666778899875443
No 251
>PRK12827 short chain dehydrogenase; Provisional
Probab=37.94 E-value=2.7e+02 Score=24.93 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=36.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCC--ccccHHHHHHHHHcCCEEEEEcCch
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTAD--MEKQSSKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~--~~~~~~k~~~l~~lGA~Vi~v~~~~ 235 (372)
.+++.+++|--|.++|......|.+++++..... .+....-...+...|.++..+..++
T Consensus 8 ~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 68 (249)
T PRK12827 8 RVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDV 68 (249)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccC
Confidence 4555566789999999998899999877653211 1111111234455677776665543
No 252
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=37.85 E-value=2.1e+02 Score=23.67 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=33.6
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccH--HHHHHHHHcCCEEEEEcCch
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQS--SKVLLMKLLGAQVKAVDGCF 235 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~--~k~~~l~~lGA~Vi~v~~~~ 235 (372)
+++.+++|..|.+++......|...++++-........ .....++..|.++..+..++
T Consensus 3 ~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 62 (180)
T smart00822 3 YLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDV 62 (180)
T ss_pred EEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCC
Confidence 44556678899999999888887544444222111111 11245566788876665543
No 253
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=37.82 E-value=2.4e+02 Score=25.90 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=23.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
.+++.+++|.-|.++|...+..|.+++++.
T Consensus 8 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 8 VALITGGGSGIGRALVERFLAEGARVAVLE 37 (263)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 455556668899999999999999977764
No 254
>PRK06260 threonine synthase; Validated
Probab=37.79 E-value=4.4e+02 Score=26.56 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=26.5
Q ss_pred CCeEEEecCcchHHHHHHHHHHHcC--------CcEEEEEcCCC
Q 017391 175 RKSIVAATGAGQHGVATAAACAKLA--------LDCTVFMGTAD 210 (372)
Q Consensus 175 ~~~~V~~aSsGN~G~AvA~aa~~~G--------i~~~Iv~P~~~ 210 (372)
.+.+|+..++|.+..+++.+++.+. .+++.+-|.+.
T Consensus 218 pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~ 261 (397)
T PRK06260 218 PDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGA 261 (397)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCC
Confidence 4788887778888888888876643 47777777654
No 255
>PRK06841 short chain dehydrogenase; Provisional
Probab=37.77 E-value=2.6e+02 Score=25.41 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=24.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
.+++.+++|--|.++|......|.+++++...
T Consensus 17 ~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 17 VAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 45555667889999999999999987776543
No 256
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=37.65 E-value=2.3e+02 Score=25.39 Aligned_cols=99 Identities=8% Similarity=-0.046 Sum_probs=48.6
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccCCCChh
Q 017391 188 GVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCP 267 (372)
Q Consensus 188 G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 267 (372)
|..+.++++.+|.+..--++..+. -..-+......|..|..++++.+. .+.+.+.+.++.++-.. .+. ++|-
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl--~~~l~~~~~~~~~~vfllG~~~~v-~~~~~~~l~~~yP~l~i-~g~----~g~f 84 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDL--MEELCQRAGKEKLPIFLYGGKPDV-LQQLKVKLIKEYPKLKI-VGA----FGPL 84 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHH--HHHHHHHHHHcCCeEEEECCCHHH-HHHHHHHHHHHCCCCEE-EEE----CCCC
Confidence 466777888887654222221110 112223344566778888775443 33444555554433222 221 2221
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCch
Q 017391 268 IMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSG 303 (372)
Q Consensus 268 ~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~G 303 (372)
. . .--.++.++|.+ ..||.++|+.|.=
T Consensus 85 ~----~--~~~~~i~~~I~~---s~~dil~VglG~P 111 (177)
T TIGR00696 85 E----P--EERKAALAKIAR---SGAGIVFVGLGCP 111 (177)
T ss_pred C----h--HHHHHHHHHHHH---cCCCEEEEEcCCc
Confidence 0 0 111345566643 2478999888763
No 257
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=37.61 E-value=1.6e+02 Score=31.12 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=37.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~ 232 (372)
++++ -+.|..|.+.+..++.+|..++++-. ...++++.+.+|++.+.++
T Consensus 166 kVlV-iGaG~iGl~Aa~~ak~lGA~V~v~d~------~~~rle~a~~lGa~~v~v~ 214 (511)
T TIGR00561 166 KVLV-IGAGVAGLAAIGAANSLGAIVRAFDT------RPEVKEQVQSMGAEFLELD 214 (511)
T ss_pred EEEE-ECCCHHHHHHHHHHHHCCCEEEEEeC------CHHHHHHHHHcCCeEEecc
Confidence 4444 36899999999999999988666532 2346778888999987665
No 258
>PRK07904 short chain dehydrogenase; Provisional
Probab=37.53 E-value=2.8e+02 Score=25.59 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=33.0
Q ss_pred eEEEecCcchHHHHHHHHHHHc-CCcEEEEEcCCCccccHHHHHHHHHcCC-EEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKL-ALDCTVFMGTADMEKQSSKVLLMKLLGA-QVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~-Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA-~Vi~v~~ 233 (372)
.+++.+++|-.|.++|..+... |.+++++...... ........++..|. ++..+..
T Consensus 10 ~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~-~~~~~~~~l~~~~~~~v~~~~~ 67 (253)
T PRK07904 10 TILLLGGTSEIGLAICERYLKNAPARVVLAALPDDP-RRDAAVAQMKAAGASSVEVIDF 67 (253)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcch-hHHHHHHHHHhcCCCceEEEEe
Confidence 4555555678999999887777 4888877543321 02223345666554 5544433
No 259
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=37.25 E-value=1.8e+02 Score=28.13 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=26.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
.++|+++.|+.-|.++|...++.|.+++++-..
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 345555556889999999999999999998765
No 260
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=36.86 E-value=1e+02 Score=30.16 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=37.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHH-HHHcCCEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLL-MKLLGAQVKAVD 232 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~-l~~lGA~Vi~v~ 232 (372)
++...+-.+|...+++.+++++|++++++.|+.-.. ...-++. .+..|.++...+
T Consensus 154 ~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 154 KVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEP-DPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred EEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCC-CHHHHHHHHHHcCCeEEEEc
Confidence 344444347899999999999999999999987422 1222222 456788886543
No 261
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.71 E-value=3.1e+02 Score=25.35 Aligned_cols=23 Identities=4% Similarity=-0.120 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHcCCcEEEEEc
Q 017391 185 GQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 185 GN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+.-|.++|...++.|.++++...
T Consensus 19 ~GIG~aia~~la~~G~~v~~~~r 41 (257)
T PRK08594 19 RSIAWGIARSLHNAGAKLVFTYA 41 (257)
T ss_pred CCHHHHHHHHHHHCCCEEEEecC
Confidence 67999999999999999877653
No 262
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=36.67 E-value=90 Score=28.46 Aligned_cols=65 Identities=20% Similarity=0.113 Sum_probs=42.5
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHH-HHHHHcCCEEEEEcCchhHHHHHHHHHHHhc
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKV-LLMKLLGAQVKAVDGCFKEASSEAIRNWVGN 249 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~-~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~ 249 (372)
+++.-|.++|....+.|.++++....... ....+ ...+.+|.+++.++-.-.+.++...+...+.
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~--~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEK--LADALEELAKEYGAEVIQCDLSDEESVEALFDEAVER 69 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHH--HHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHH--HHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhh
Confidence 46788999999999999999998765331 11223 3445689998777764444444444444443
No 263
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=36.49 E-value=2.7e+02 Score=24.74 Aligned_cols=55 Identities=18% Similarity=0.106 Sum_probs=35.3
Q ss_pred EEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 179 VAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 179 V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
++.+++|-.|.++|......|.+++++..... +..+.....++..|+++..+..+
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D 56 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSE-EGAEEVVEELKAYGVKALGVVCD 56 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCch-hHHHHHHHHHHhcCCceEEEEec
Confidence 34466788999999998889998777654321 11223334566778777555443
No 264
>PRK07074 short chain dehydrogenase; Provisional
Probab=36.47 E-value=2.4e+02 Score=25.69 Aligned_cols=31 Identities=16% Similarity=0.021 Sum_probs=24.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++++.+.+|.-|.++|...+..|.+++++..
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~r 34 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALDI 34 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 4555566688999999999889999877653
No 265
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.41 E-value=3.2e+02 Score=25.74 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHH-HHcCCE-EEEEcCchhHHHHHHHHHHHh
Q 017391 185 GQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLM-KLLGAQ-VKAVDGCFKEASSEAIRNWVG 248 (372)
Q Consensus 185 GN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l-~~lGA~-Vi~v~~~~~da~~~a~~~~~~ 248 (372)
+--|.++|...+..|.++++...... ...++..+ +.+|.+ .+.++-+-.+.+..+.+...+
T Consensus 17 ~GIG~aiA~~la~~G~~Vil~~r~~~---~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~ 79 (274)
T PRK08415 17 KSIAYGIAKACFEQGAELAFTYLNEA---LKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKK 79 (274)
T ss_pred CCHHHHHHHHHHHCCCEEEEEecCHH---HHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHH
Confidence 45788899999999999887654321 12333333 345644 344544333334444444444
No 266
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=36.40 E-value=1.8e+02 Score=28.82 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=35.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccc---c----HHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEK---Q----SSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~---~----~~k~~~l~~lGA~Vi 229 (372)
++++. ++|..|.-+|...+..|.+++++.+....-. . ..-.+.++..|.+++
T Consensus 143 ~vvVi-GgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~ 201 (377)
T PRK04965 143 RVLVV-GGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLL 201 (377)
T ss_pred eEEEE-CCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEE
Confidence 44443 5899999999999999999999987653210 0 112345667777664
No 267
>PRK06180 short chain dehydrogenase; Provisional
Probab=36.40 E-value=2.2e+02 Score=26.51 Aligned_cols=32 Identities=16% Similarity=0.022 Sum_probs=25.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+.+++.+++|.-|.+++......|.+++++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeC
Confidence 34555566789999999999999999887754
No 268
>PRK08264 short chain dehydrogenase; Validated
Probab=36.37 E-value=1.1e+02 Score=27.47 Aligned_cols=32 Identities=9% Similarity=-0.038 Sum_probs=25.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCC-cEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLAL-DCTVFMG 207 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi-~~~Iv~P 207 (372)
+.+++.+++|.-|.++|......|. +++++..
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 3556656789999999999999999 7766653
No 269
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.34 E-value=2.3e+02 Score=26.91 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=47.1
Q ss_pred CCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHH-HcCCEEEEEcCchhHHHHHHHHHHHh
Q 017391 174 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMK-LLGAQVKAVDGCFKEASSEAIRNWVG 248 (372)
Q Consensus 174 g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~-~lGA~Vi~v~~~~~da~~~a~~~~~~ 248 (372)
.+...|+.+|+|--|.|+|.-.++.|+.+..--.. .+...++. ..|-.+...+-+-+|-+..+..+..+
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~------~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARR------LEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccc------cchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhh
Confidence 44567777788999999999999999988765332 23333444 67877777776555556565555444
No 270
>PRK12742 oxidoreductase; Provisional
Probab=36.29 E-value=2.5e+02 Score=25.11 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=33.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHH-HHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLM-KLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l-~~lGA~Vi~v~~ 233 (372)
.+++.+++|.-|.++|......|.++++...... ++...+ ..++.+.+.++-
T Consensus 8 ~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~-----~~~~~l~~~~~~~~~~~D~ 60 (237)
T PRK12742 8 KVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSK-----DAAERLAQETGATAVQTDS 60 (237)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEecCCCH-----HHHHHHHHHhCCeEEecCC
Confidence 5555566789999999999999999876643221 222222 345666655554
No 271
>PRK06482 short chain dehydrogenase; Provisional
Probab=36.28 E-value=2.1e+02 Score=26.44 Aligned_cols=31 Identities=3% Similarity=-0.063 Sum_probs=24.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++++.+++|.-|.++|......|.+++++..
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r 34 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVR 34 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4555566799999999999999999887764
No 272
>PLN02253 xanthoxin dehydrogenase
Probab=36.23 E-value=2.7e+02 Score=25.87 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=25.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++|.-|.++|...+..|.+++++..
T Consensus 20 ~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 20 VALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 4555566789999999999999999887754
No 273
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.19 E-value=2.5e+02 Score=25.14 Aligned_cols=32 Identities=13% Similarity=-0.018 Sum_probs=26.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
++++.+++|..|.+++..+...|.+++++...
T Consensus 7 ~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 7 KVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 55555667899999999999999998887654
No 274
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=35.94 E-value=53 Score=29.37 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.3
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
++|..|.++|..++..|++++++=+.
T Consensus 6 GaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 6 GAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred cCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 68999999999999999999999664
No 275
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=35.93 E-value=1.3e+02 Score=32.61 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=41.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchh
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK 236 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~ 236 (372)
+++|+ .+.|..|..+|..-...|++++++ +. .+++++.++..|.+|+.-|.+-.
T Consensus 401 ~~vII-~G~Gr~G~~va~~L~~~g~~vvvI--D~----d~~~v~~~~~~g~~v~~GDat~~ 454 (621)
T PRK03562 401 PRVII-AGFGRFGQIVGRLLLSSGVKMTVL--DH----DPDHIETLRKFGMKVFYGDATRM 454 (621)
T ss_pred CcEEE-EecChHHHHHHHHHHhCCCCEEEE--EC----CHHHHHHHHhcCCeEEEEeCCCH
Confidence 45555 478999999999999999999887 22 34577788889988877766433
No 276
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=35.81 E-value=93 Score=30.62 Aligned_cols=56 Identities=7% Similarity=0.055 Sum_probs=35.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCcccc-HHHHHHHHHcCCEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQ-SSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~-~~k~~~l~~lGA~Vi~v~ 232 (372)
.+|++-+.+.+..++-..|+..|.+..|++-+..+..+ ....+.++.+|-++..+.
T Consensus 121 ~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~ 177 (301)
T COG1184 121 DVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIV 177 (301)
T ss_pred CEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEe
Confidence 44554555667777777777788877777766654421 234457788887775544
No 277
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=35.71 E-value=51 Score=32.98 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.4
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
++|..|.+.|..++..|.+|+|+=-.
T Consensus 6 G~G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 6 GGGLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp -SSHHHHHHHHHHHHTTT-EEEEESS
T ss_pred CCCHHHHHHHHHHhhhcCeEEEEEee
Confidence 68999999999999999999888543
No 278
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=35.66 E-value=1.5e+02 Score=28.67 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=35.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
+.+++ .++|..|.+++..|+.+|.+.++.+.. .+.+...++.+|++.+
T Consensus 176 ~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~-----~~~~~~~~~~~g~~~v 223 (350)
T cd08256 176 DVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL-----KDERLALARKFGADVV 223 (350)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC-----CHHHHHHHHHcCCcEE
Confidence 45555 567999999999999999987666543 2456667788998654
No 279
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=35.57 E-value=3.2e+02 Score=24.90 Aligned_cols=31 Identities=16% Similarity=0.013 Sum_probs=24.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++|.-|.++|...+..|.+++++..
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 4555566789999999999999998877754
No 280
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=35.55 E-value=1.3e+02 Score=32.22 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=42.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhH
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKE 237 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~d 237 (372)
+++|+ ++.|..|..+|..-...|++++++=. .+++++.++..|.+++.-+.+-.+
T Consensus 401 ~~vII-~G~Gr~G~~va~~L~~~g~~vvvID~------d~~~v~~~~~~g~~v~~GDat~~~ 455 (601)
T PRK03659 401 PQVII-VGFGRFGQVIGRLLMANKMRITVLER------DISAVNLMRKYGYKVYYGDATQLE 455 (601)
T ss_pred CCEEE-ecCchHHHHHHHHHHhCCCCEEEEEC------CHHHHHHHHhCCCeEEEeeCCCHH
Confidence 45555 47899999999999999999988732 245677888899988777765443
No 281
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=35.49 E-value=1.1e+02 Score=29.02 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=34.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
+.+++.+.+|..|.++...|+.+|+++++... ..++...++.+|++-+.
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~------s~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG------SDDKVAWLKELGFDAVF 193 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeC------CHHHHHHHHHcCCCEEE
Confidence 35555445689999998899999998655532 24567788889986543
No 282
>PRK06500 short chain dehydrogenase; Provisional
Probab=35.27 E-value=2.6e+02 Score=25.12 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=32.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHH-HHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVL-LMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~-~l~~lGA~Vi~v~~ 233 (372)
.+++.+.+|.-|.++|......|.+++++... .++.. ..+.+|.++..+..
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~v~~~~r~------~~~~~~~~~~~~~~~~~~~~ 59 (249)
T PRK06500 8 TALITGGTSGIGLETARQFLAEGARVAITGRD------PASLEAARAELGESALVIRA 59 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCC------HHHHHHHHHHhCCceEEEEe
Confidence 55555667999999999999999987765332 11221 23345777654433
No 283
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=35.24 E-value=2.5e+02 Score=28.04 Aligned_cols=34 Identities=35% Similarity=0.399 Sum_probs=27.3
Q ss_pred CCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCC
Q 017391 174 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTA 209 (372)
Q Consensus 174 g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~ 209 (372)
++ ++++. ++|..|.-+|..++..|.+++++.+..
T Consensus 144 ~~-~vvVi-GgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 144 ER-SVVIV-GAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred CC-eEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 44 44443 689999999999999999999998754
No 284
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=35.15 E-value=1.3e+02 Score=29.28 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=32.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
++++ .+.|-.|.+++..|+.+|.+++++.+ .+.|++.++.+||+.+
T Consensus 168 ~VlV-~G~g~iG~~a~~~a~~~G~~vi~~~~------~~~~~~~a~~~Ga~~v 213 (329)
T TIGR02822 168 RLGL-YGFGGSAHLTAQVALAQGATVHVMTR------GAAARRLALALGAASA 213 (329)
T ss_pred EEEE-EcCCHHHHHHHHHHHHCCCeEEEEeC------ChHHHHHHHHhCCcee
Confidence 4444 34688888888889999997554432 2456778999999754
No 285
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=35.01 E-value=3e+02 Score=24.96 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=22.3
Q ss_pred EEecCcchHHHHHHHHHHHcCCcEEEE
Q 017391 179 VAATGAGQHGVATAAACAKLALDCTVF 205 (372)
Q Consensus 179 V~~aSsGN~G~AvA~aa~~~Gi~~~Iv 205 (372)
|+.-+.||-|.++|......|.+++++
T Consensus 31 v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 31 VAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 334578999999999999999988854
No 286
>PRK06197 short chain dehydrogenase; Provisional
Probab=34.98 E-value=2.3e+02 Score=26.93 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=25.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
+.+++.+++|--|.++|...+..|.+++++...
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 355555666889999999988899988777643
No 287
>PTZ00323 NAD+ synthase; Provisional
Probab=34.91 E-value=2.3e+02 Score=27.75 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=37.2
Q ss_pred HHcCCCeEEEecCcc-hHHHHHHHHHHHcCC-------cEEEEEcCCCccc-cHHHHHHHHHcCCEEEEEcC
Q 017391 171 KRMGRKSIVAATGAG-QHGVATAAACAKLAL-------DCTVFMGTADMEK-QSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 171 ~~~g~~~~V~~aSsG-N~G~AvA~aa~~~Gi-------~~~Iv~P~~~~~~-~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++.|.+.+|+.-|+| +....++.+...+|. -+.+++|...... .+.-...++.+|.+.+.++-
T Consensus 42 ~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi 113 (294)
T PTZ00323 42 RRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQ 113 (294)
T ss_pred HHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEEC
Confidence 345677777777666 566665555555654 2345667431111 12233457889999877765
No 288
>PLN02583 cinnamoyl-CoA reductase
Probab=34.79 E-value=1e+02 Score=29.31 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=26.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
+.+++.+++|--|.+++......|.+++++...
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 355665667999999999999999999988754
No 289
>PRK08177 short chain dehydrogenase; Provisional
Probab=34.62 E-value=3.4e+02 Score=24.26 Aligned_cols=32 Identities=6% Similarity=0.015 Sum_probs=25.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
.+++.+++|.-|.++|...+..|.+++++...
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRG 34 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 45565667999999999999999988877643
No 290
>PRK05875 short chain dehydrogenase; Provisional
Probab=34.45 E-value=3e+02 Score=25.37 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=25.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+.+++.+++|..|.++|......|.+++++..
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r 39 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGR 39 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC
Confidence 35555566789999999999999999877764
No 291
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=34.43 E-value=1.2e+02 Score=32.06 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=36.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~ 232 (372)
++++ -++|..|.+.+..|+.+|-+++++ + . ..+++++.+.+||+.+.++
T Consensus 167 kVlV-iGaG~iGL~Ai~~Ak~lGA~V~a~--D-~---~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 167 KVLV-IGAGVAGLAAIGAAGSLGAIVRAF--D-T---RPEVAEQVESMGAEFLELD 215 (509)
T ss_pred EEEE-ECCcHHHHHHHHHHHHCCCEEEEE--e-C---CHHHHHHHHHcCCeEEEec
Confidence 4444 479999999999999999864443 1 1 3567889999999965443
No 292
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=34.42 E-value=1.5e+02 Score=33.57 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHH
Q 017391 164 IGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAI 243 (372)
Q Consensus 164 ~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~ 243 (372)
...+...+++|.+...+ +|++=.+.-..|+..|++ .++-+-.+++..+++++++..|..|..|++...|+-..|.
T Consensus 729 ~~av~~Lk~~Gi~v~mL---TGDn~~aA~svA~~VGi~--~V~aev~P~~K~~~Ik~lq~~~~~VaMVGDGINDaPALA~ 803 (951)
T KOG0207|consen 729 ALAVAELKSMGIKVVML---TGDNDAAARSVAQQVGID--NVYAEVLPEQKAEKIKEIQKNGGPVAMVGDGINDAPALAQ 803 (951)
T ss_pred HHHHHHHHhcCceEEEE---cCCCHHHHHHHHHhhCcc--eEEeccCchhhHHHHHHHHhcCCcEEEEeCCCCccHHHHh
Confidence 34445567889766665 465555555667788844 3444444444567899999999889999887777665553
No 293
>PRK05855 short chain dehydrogenase; Validated
Probab=34.36 E-value=2.6e+02 Score=28.85 Aligned_cols=56 Identities=20% Similarity=0.113 Sum_probs=36.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+.++.+++|--|.++|...+..|.+++++..... ..++....++..|.++..+..
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 371 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGAEVVASDIDEA--AAERTAELIRAAGAVAHAYRV 371 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEc
Confidence 35566566788999999999999999777653321 122223345667877755444
No 294
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.35 E-value=2.6e+02 Score=26.11 Aligned_cols=60 Identities=7% Similarity=-0.098 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE--EEEcCchhHHHHHHHHHHHh
Q 017391 186 QHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV--KAVDGCFKEASSEAIRNWVG 248 (372)
Q Consensus 186 N~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V--i~v~~~~~da~~~a~~~~~~ 248 (372)
.-|.|+|...+..|.++++...... .+..++.+...+.++ +.++-+-.+.++.+.+...+
T Consensus 19 GIG~aia~~la~~G~~vil~~r~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 19 SIAYGIAQAMHREGAELAFTYQNDK---LKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred cHHHHHHHHHHHCCCEEEEEecchh---HHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHh
Confidence 5888999999999998876654321 233444554433233 44443323334444444333
No 295
>PLN02740 Alcohol dehydrogenase-like
Probab=34.19 E-value=2.5e+02 Score=27.72 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=32.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
.+++. ++|--|.+++..|+.+|.+.++.+-. ..++++.++.+|++.+
T Consensus 201 ~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~~~-----~~~r~~~a~~~Ga~~~ 247 (381)
T PLN02740 201 SVAIF-GLGAVGLAVAEGARARGASKIIGVDI-----NPEKFEKGKEMGITDF 247 (381)
T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCCcEEEEcC-----ChHHHHHHHHcCCcEE
Confidence 44443 57999999999999999853343321 2456778888999653
No 296
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=34.17 E-value=1.1e+02 Score=28.24 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=26.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
.++++.+.+|..|.+++......|.+++++...
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence 455665667999999999988889998877643
No 297
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=34.15 E-value=5.2e+02 Score=26.35 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=37.2
Q ss_pred eEEEecCcchHHHHHHHHHHHc--CCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKL--ALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~--Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
++++.+|+|+-|.+..-+.++. .++++.+.-... ...-..+.+.++.+.+.+..
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n---~~~l~~q~~~f~p~~v~i~~ 58 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKN---VELLAEQAREFRPKYVVVAD 58 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCC---HHHHHHHHHHhCCCEEEEcC
Confidence 4555577899999888777663 677777764443 23344578889998877755
No 298
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=33.97 E-value=2.6e+02 Score=26.75 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=23.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++++.+++|--|.++|......|.+++++..
T Consensus 8 ~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 8 TVIITGASSGVGLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 4555566688899999998889988777653
No 299
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=33.92 E-value=1.8e+02 Score=31.88 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHH
Q 017391 164 IGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEA 242 (372)
Q Consensus 164 ~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a 242 (372)
...+...++.|.+.+++ +|++-....+.|+..|++- ++-+-.+++...-++.++..|..|-.+++...|+-..+
T Consensus 451 ~eai~~Lr~~GI~vvMi---TGDn~~TA~aIA~elGId~--v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPALa 524 (679)
T PRK01122 451 KERFAELRKMGIKTVMI---TGDNPLTAAAIAAEAGVDD--FLAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPALA 524 (679)
T ss_pred HHHHHHHHHCCCeEEEE---CCCCHHHHHHHHHHcCCcE--EEccCCHHHHHHHHHHHHHcCCeEEEECCCcchHHHHH
Confidence 34445566788865555 6888888888899999964 23333432223445566667777888887777765443
No 300
>PRK05872 short chain dehydrogenase; Provisional
Probab=33.91 E-value=2.8e+02 Score=26.26 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=24.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++|.-|.++|...+..|.+++++..
T Consensus 11 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r 41 (296)
T PRK05872 11 VVVVTGAARGIGAELARRLHARGAKLALVDL 41 (296)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 5555566788999999999999998777643
No 301
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=33.66 E-value=53 Score=31.20 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=23.6
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
++++ ++|=.|.++|.+.++.|++++|+=..
T Consensus 4 V~Iv-GaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 4 VAIV-GAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEE---SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEE-CCCHHHHHHHHHHHhcccccccchhc
Confidence 3443 68999999999999999999998654
No 302
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=33.64 E-value=2.9e+02 Score=28.98 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=20.3
Q ss_pred HHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 167 AMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 167 ~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
+..|.+.+.+.+|+.+.||.++..+|.+ +..++.+++.|.
T Consensus 368 v~~A~~l~akaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~ 407 (480)
T cd00288 368 VRAAFELGAKAIVVLTTSGRTARLVSKY--RPNAPIIAVTRN 407 (480)
T ss_pred HHHHHhcCCCEEEEECCCcHHHHHHHhh--CCCCCEEEEcCC
Confidence 3344444555555555556665544332 344555555544
No 303
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=33.63 E-value=56 Score=28.78 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=18.7
Q ss_pred CcchHHHHHHHHHHHcCCc-EEEEEcC
Q 017391 183 GAGQHGVATAAACAKLALD-CTVFMGT 208 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~-~~Iv~P~ 208 (372)
++|-.|.++|..+.+.|++ ++|+=+.
T Consensus 4 GaG~aGl~~a~~l~~~g~~~v~v~e~~ 30 (203)
T PF13738_consen 4 GAGPAGLAAAAHLLERGIDPVVVLERN 30 (203)
T ss_dssp --SHHHHHHHHHHHHTT---EEEEESS
T ss_pred CcCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence 6899999999999999999 6666444
No 304
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=33.37 E-value=50 Score=33.66 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=20.9
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcCC
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGTA 209 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~~ 209 (372)
++|-.|.+.|.+|++.|.++.++=+..
T Consensus 6 GgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 6 GGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp --SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred CccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 689999999999999999999986554
No 305
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=33.36 E-value=2.2e+02 Score=28.85 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=56.6
Q ss_pred CcchhhHHHHHHHHHHHHcC----CCe-EEEecCcchHHHHHHHHHHH-cCCcEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 155 VGAHKINNAIGQAMIAKRMG----RKS-IVAATGAGQHGVATAAACAK-LALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 155 TGSfKdRga~~~~~~a~~~g----~~~-~V~~aSsGN~G~AvA~aa~~-~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
.|.-..|-+...-.. ++.| ... +++ +.++..|..++..+-. .|=+++|..|.-. .-....+..|+++
T Consensus 65 ~G~~~LReaia~~~~-~~~~~~~~~~~eiiv-t~Ga~~al~~~~~a~~~pGDeVlip~P~Y~-----~y~~~~~~~gg~~ 137 (393)
T COG0436 65 AGIPELREAIAEKYK-RRYGLDVDPEEEIIV-TAGAKEALFLAFLALLNPGDEVLIPDPGYP-----SYEAAVKLAGGKP 137 (393)
T ss_pred CCCHHHHHHHHHHHH-HHhCCCCCCCCeEEE-eCCHHHHHHHHHHHhcCCCCEEEEeCCCCc-----CHHHHHHhcCCEE
Confidence 466777877665432 2333 123 444 4567788887777655 6666666666533 2344788899999
Q ss_pred EEEcC-----chhHHHHHHHHHHHhccCCcEEEeccccCCC
Q 017391 229 KAVDG-----CFKEASSEAIRNWVGNLEKSYYLTGTVVGPH 264 (372)
Q Consensus 229 i~v~~-----~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~ 264 (372)
+.++- +|.=..+.. ++...+ .....++++-+||.
T Consensus 138 v~v~l~~~~~~f~~d~~~l-~~~i~~-ktk~i~ln~P~NPT 176 (393)
T COG0436 138 VPVPLDEEENGFKPDLEDL-EAAITP-KTKAIILNSPNNPT 176 (393)
T ss_pred EEEeCCcCccCCcCCHHHH-HhhcCc-cceEEEEeCCCCCc
Confidence 88873 232112222 222332 23455567666444
No 306
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=33.31 E-value=1.6e+02 Score=29.43 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=34.6
Q ss_pred chHHHHHHHH-HHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 185 GQHGVATAAA-CAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 185 GN~G~AvA~a-a~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+|.+.+++.+ ++.+|++++++.|++-. .+..-+..++..|++|..++.
T Consensus 171 ~rv~~Sl~~~l~~~~g~~v~~~~P~~~~-~~~~~~~~~~~~g~~~~~~~d 219 (338)
T PRK08192 171 GRTVHSLSRLLCMYKNVSFTLVSPKELA-MPDYVISDIENAGHKITITDQ 219 (338)
T ss_pred CchHHHHHHHHHHhcCCEEEEECCcccc-CCHHHHHHHHHcCCeEEEEcC
Confidence 5789999876 55679999999998752 133445566777888866553
No 307
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=33.24 E-value=1.7e+02 Score=28.16 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=33.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHH-cCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKL-LGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~-lGA~Vi 229 (372)
+.+++.+.+|.-|.+++..|+.+|.++++... ..++...++. +|++-+
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~------~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG------SDEKVDLLKNKLGFDDA 201 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeC------CHHHHHHHHHhcCCcee
Confidence 35555454689999999999999998655542 2456667777 998643
No 308
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.01 E-value=3e+02 Score=25.42 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHcCCcEEEEEcC
Q 017391 186 QHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 186 N~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
--|.++|...+..|.++++....
T Consensus 23 GIG~a~a~~la~~G~~v~l~~r~ 45 (258)
T PRK07533 23 SIAWGCARAFRALGAELAVTYLN 45 (258)
T ss_pred cHHHHHHHHHHHcCCEEEEEeCC
Confidence 68999999999999998777543
No 309
>PRK06720 hypothetical protein; Provisional
Probab=32.96 E-value=3.4e+02 Score=23.83 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=33.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~ 232 (372)
.++++++++--|.++|......|.+++++..... ....-...++..|.++..+.
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~--~~~~~~~~l~~~~~~~~~~~ 71 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQE--SGQATVEEITNLGGEALFVS 71 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEE
Confidence 4444455567999999999999998877764321 11222245556676664443
No 310
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=32.89 E-value=1.4e+02 Score=34.13 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=34.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCC--ccccHHHHHHHHHcCCEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTAD--MEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~--~~~~~~k~~~l~~lGA~V 228 (372)
++|+. ++||+|.-+|..+.+.|-++++++.... .+.....+......|.++
T Consensus 449 ~VvVI-GGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~ 501 (944)
T PRK12779 449 EVFVI-GGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINL 501 (944)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEE
Confidence 44443 6899999999999999999999986542 111122333344567765
No 311
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=32.89 E-value=2.8e+02 Score=27.78 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=35.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
+++++ .++|-.|.+++..|+.+|.+.+++. .. .+.++...+.+|++.+
T Consensus 187 ~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~-d~----~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 187 STVYI-AGAGPVGLAAAASAQLLGAAVVIVG-DL----NPARLAQARSFGCETV 234 (393)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCceEEEe-CC----CHHHHHHHHHcCCeEE
Confidence 35555 5679999999999999999877643 11 3467788899999853
No 312
>PRK12746 short chain dehydrogenase; Provisional
Probab=32.85 E-value=2e+02 Score=26.06 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=34.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+.+++.+++|--|.++|......|.+++++..... .........+...+.++..+..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~-~~~~~~~~~~~~~~~~~~~~~~ 63 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNK-QAADETIREIESNGGKAFLIEA 63 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHhcCCcEEEEEc
Confidence 35566567799999999999889998877643321 1111222234444666655544
No 313
>PRK07831 short chain dehydrogenase; Provisional
Probab=32.68 E-value=3.4e+02 Score=24.88 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=22.1
Q ss_pred eEEEecCcc-hHHHHHHHHHHHcCCcEEEEE
Q 017391 177 SIVAATGAG-QHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 177 ~~V~~aSsG-N~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
.+++.+++| .-|.++|...+..|.++++.-
T Consensus 19 ~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~ 49 (262)
T PRK07831 19 VVLVTAAAGTGIGSATARRALEEGARVVISD 49 (262)
T ss_pred EEEEECCCcccHHHHHHHHHHHcCCEEEEEe
Confidence 445445456 699999999999999866654
No 314
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=32.66 E-value=55 Score=33.38 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.5
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEE
Q 017391 183 GAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
++|-.|...|+++++.|.++.++.
T Consensus 6 GgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 6 GGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp SSSHHHHHHHHHHHHTT--EEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEe
Confidence 689999999999999999999994
No 315
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=32.64 E-value=2.3e+02 Score=31.14 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHH
Q 017391 163 AIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEA 242 (372)
Q Consensus 163 a~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a 242 (372)
+...+..+++.|.+.+++ +|++-...+..|+..|+.- ++-+-.+++...-++.++..|..|-.+++...|+-..+
T Consensus 446 a~e~I~~Lr~~GI~vvMi---TGDn~~TA~aIA~elGI~~--v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPALa 520 (673)
T PRK14010 446 LVERFRELREMGIETVMC---TGDNELTAATIAKEAGVDR--FVAECKPEDKINVIREEQAKGHIVAMTGDGTNDAPALA 520 (673)
T ss_pred HHHHHHHHHHCCCeEEEE---CCCCHHHHHHHHHHcCCce--EEcCCCHHHHHHHHHHHHhCCCEEEEECCChhhHHHHH
Confidence 344455566788876555 6888888888899999963 23333322223344556666777888888777775444
No 316
>PRK09135 pteridine reductase; Provisional
Probab=32.60 E-value=3.5e+02 Score=24.16 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=26.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
.+++.+++|.-|.+++......|.+++++...
T Consensus 8 ~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 8 VALITGGARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 45555667899999999999999999888754
No 317
>PRK05370 argininosuccinate synthase; Validated
Probab=32.59 E-value=5.9e+02 Score=26.52 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=39.7
Q ss_pred CCCeEEEecCcc-hHHHHHHHHHHHcCCcEEEEEcCC-C--ccccHHHHHHHHHcCC-EEEEEcC
Q 017391 174 GRKSIVAATGAG-QHGVATAAACAKLALDCTVFMGTA-D--MEKQSSKVLLMKLLGA-QVKAVDG 233 (372)
Q Consensus 174 g~~~~V~~aSsG-N~G~AvA~aa~~~Gi~~~Iv~P~~-~--~~~~~~k~~~l~~lGA-~Vi~v~~ 233 (372)
+.+++|++.|+| +|-..+-|.-.. |++++.|+-+- - ......-.+....+|| +++.++-
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDl 73 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDC 73 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEecc
Confidence 345788888777 788888887766 99988887432 1 1122334456778999 6777775
No 318
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=32.57 E-value=2.2e+02 Score=26.84 Aligned_cols=50 Identities=24% Similarity=0.247 Sum_probs=34.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV 231 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v 231 (372)
+.+++...+|..|.+++..|+.+|.+++++... .++...++.+|++.+..
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKYGAATIITTSS------EEKVDFCKKLAAIILIR 191 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCcEEEe
Confidence 345554446999999999999999987665432 34555667789864443
No 319
>PRK07576 short chain dehydrogenase; Provisional
Probab=32.36 E-value=2.4e+02 Score=26.11 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=34.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.+++.+.+|.-|.++|...+..|.+++++..... ........+...+.+++.+..
T Consensus 11 ~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 65 (264)
T PRK07576 11 NVVVVGGTSGINLGIAQAFARAGANVAVASRSQE--KVDAAVAQLQQAGPEGLGVSA 65 (264)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhCCceEEEEC
Confidence 4555566788999999999899999877754321 112222345556666654443
No 320
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=32.36 E-value=1.7e+02 Score=29.06 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=35.9
Q ss_pred HcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 172 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 172 ~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
..|.+.+++ +++|..|..++..+...+-.-.|++|... -......++..|++++.++-
T Consensus 43 ~~g~~~~v~-~~sgt~al~~~l~~~~~~~Gd~Viv~~~t---~~~~~~~~~~~G~~~v~~d~ 100 (375)
T PRK11706 43 RFGSAKVLL-TPSCTAALEMAALLLDIQPGDEVIMPSYT---FVSTANAFVLRGAKIVFVDI 100 (375)
T ss_pred HhCCCeEEE-ECCHHHHHHHHHHHhCCCCCCEEEECCCC---cHHHHHHHHHcCCEEEEEec
Confidence 456666666 45787777665544322222356677654 23455677889999988864
No 321
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.17 E-value=2e+02 Score=28.76 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=32.7
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+.|-.|.-.-..|+.+|++++++-... ..|.+.++.|||+...+..
T Consensus 189 GlGGLGh~aVq~AKAMG~rV~vis~~~-----~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 189 GLGGLGHMAVQYAKAMGMRVTVISTSS-----KKKEEAIKSLGADVFVDST 234 (360)
T ss_pred cCcccchHHHHHHHHhCcEEEEEeCCc-----hhHHHHHHhcCcceeEEec
Confidence 444466655566888999999985432 2456689999999966654
No 322
>PRK06179 short chain dehydrogenase; Provisional
Probab=32.08 E-value=2.9e+02 Score=25.35 Aligned_cols=31 Identities=16% Similarity=0.028 Sum_probs=24.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++|.-|.++|...+..|.+++++..
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r 36 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGTSR 36 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4566566788999999999999999877654
No 323
>PLN02342 ornithine carbamoyltransferase
Probab=31.94 E-value=1.2e+02 Score=30.34 Aligned_cols=54 Identities=9% Similarity=0.004 Sum_probs=36.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCC-EEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGA-QVKAV 231 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA-~Vi~v 231 (372)
++...+-..|...+++.+++++|++++++.|++-.. .++-+...+..|. ++...
T Consensus 196 kva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~-~~~~~~~a~~~g~~~~~~~ 250 (348)
T PLN02342 196 KVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEP-DAKTVEKARAAGISKIEIT 250 (348)
T ss_pred EEEEECCCchhHHHHHHHHHHcCCEEEEECCccccc-CHHHHHHHHHhCCCcEEEE
Confidence 444433335799999999999999999999987432 3344455566674 66544
No 324
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=31.94 E-value=1.5e+02 Score=31.54 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHcC-CcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 185 GQHGVATAAACAKLA-LDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 185 GN~G~AvA~aa~~~G-i~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
+|.+.+++.+++.+| ++++++.|++-.. +..-+..++..|+.+..++.
T Consensus 186 ~rva~Sl~~~l~~~g~~~v~l~~P~~~~~-p~~~~~~a~~~G~~v~i~~d 234 (525)
T PRK13376 186 GRTVHSKVNGLKIFKNVKVDLIAPEELAM-PEHYVEKMKKNGFEVRIFSS 234 (525)
T ss_pred CcHHHHHHHHHHhcCCcEEEEECCccccC-CHHHHHHHHHcCCeEEEEcC
Confidence 688999999999998 9999999987521 33445566678988866554
No 325
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=31.82 E-value=2e+02 Score=27.85 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=34.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
+++++. ++|-.|.+++..++.+|.+.++.+-. .+++++..+.+||+.+.
T Consensus 171 ~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~~-----~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 171 KRVFVS-GVGPIGCLIVAAVKTLGAAEIVCADV-----SPRSLSLAREMGADKLV 219 (343)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEeC-----CHHHHHHHHHcCCcEEe
Confidence 344443 57999999988899999965544422 34677788899997643
No 326
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=31.82 E-value=2e+02 Score=28.27 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=31.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
++++ .++|.-|.+++..|+.+|.+++++..... .+....+.+|++-+
T Consensus 186 ~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~-----~~~~~~~~~Ga~~v 232 (360)
T PLN02586 186 HLGV-AGLGGLGHVAVKIGKAFGLKVTVISSSSN-----KEDEAINRLGADSF 232 (360)
T ss_pred EEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCCcc-----hhhhHHHhCCCcEE
Confidence 4444 56799999999999999998665543221 22335567888643
No 327
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=31.53 E-value=86 Score=27.76 Aligned_cols=111 Identities=15% Similarity=0.163 Sum_probs=61.3
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEeccccC
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVG 262 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~ 262 (372)
+.|+-|.++|..++.+|++++.+=|.... .. .....|... . +++|....+ + +.++.-..
T Consensus 43 G~G~IG~~vA~~l~~fG~~V~~~d~~~~~---~~---~~~~~~~~~---~-~l~ell~~a---------D-iv~~~~pl- 101 (178)
T PF02826_consen 43 GYGRIGRAVARRLKAFGMRVIGYDRSPKP---EE---GADEFGVEY---V-SLDELLAQA---------D-IVSLHLPL- 101 (178)
T ss_dssp STSHHHHHHHHHHHHTT-EEEEEESSCHH---HH---HHHHTTEEE---S-SHHHHHHH----------S-EEEE-SSS-
T ss_pred EEcCCcCeEeeeeecCCceeEEecccCCh---hh---hccccccee---e-ehhhhcchh---------h-hhhhhhcc-
Confidence 68999999999999999999988776441 11 233444422 1 444432111 1 22221111
Q ss_pred CCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHH--HhhhhhhcCCCCcEEEEEecCC
Q 017391 263 PHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA--LGLFHEFINDEDVRLIGVEAAG 328 (372)
Q Consensus 263 ~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~l--aGi~~~~~~~~~vrvigVe~~g 328 (372)
++- -...+..+.++++ ++.+++|-+|-|+.+ .++..+++. ..+.=.+.+...
T Consensus 102 -t~~------T~~li~~~~l~~m------k~ga~lvN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~ 155 (178)
T PF02826_consen 102 -TPE------TRGLINAEFLAKM------KPGAVLVNVARGELVDEDALLDALES-GKIAGAALDVFE 155 (178)
T ss_dssp -STT------TTTSBSHHHHHTS------TTTEEEEESSSGGGB-HHHHHHHHHT-TSEEEEEESS-S
T ss_pred -ccc------cceeeeeeeeecc------ccceEEEeccchhhhhhhHHHHHHhh-ccCceEEEECCC
Confidence 111 1112334544443 268999999999876 666666653 345555555443
No 328
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=31.42 E-value=1.8e+02 Score=27.90 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=33.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
+++++.+ +|..|.+++..|+.+|.+++++.+. ..++..++.+|++-+
T Consensus 165 ~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~------~~~~~~~~~~g~~~~ 211 (333)
T cd08296 165 DLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRG------SDKADLARKLGAHHY 211 (333)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCC------hHHHHHHHHcCCcEE
Confidence 3555544 8999999999999999986555332 345667788998543
No 329
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=31.39 E-value=1.7e+02 Score=28.19 Aligned_cols=65 Identities=17% Similarity=0.098 Sum_probs=37.5
Q ss_pred CCeeEEeecCCCcCcchhhHHHHHH-HHHHH----HcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 142 GPEIYLKREDLNHVGAHKINNAIGQ-AMIAK----RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 142 ~~~IylK~E~~~pTGSfKdRga~~~-~~~a~----~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
..|..+.+++-.-.|-+=|-..+.. +.... -.++ ++++. ++|-+|+|++++.+.+|++-+.++..
T Consensus 88 AVNTv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k-~vlvl-GaGGaarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 88 SVNTLLRTQNGIWKGDNTDWDGIAGALANIGKFEPLAGF-RGLVI-GAGGTSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred ceeEEEEcCCCcEEEecCCHHHHHHHHHhhCCccccCCc-eEEEE-cCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4566555443333455555433333 32211 0133 34443 68999999999999999976666543
No 330
>PRK07024 short chain dehydrogenase; Provisional
Probab=31.36 E-value=2.5e+02 Score=25.67 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=24.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++++.+++|--|.++|...+..|.+++++..
T Consensus 4 ~vlItGas~gIG~~la~~l~~~G~~v~~~~r 34 (257)
T PRK07024 4 KVFITGASSGIGQALAREYARQGATLGLVAR 34 (257)
T ss_pred EEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4555566788999999999899998777653
No 331
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=31.30 E-value=66 Score=31.52 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.8
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++|-+|.++|+..++.|.+++|+=.
T Consensus 7 GaGi~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 7 GAGIMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEec
Confidence 6899999999999999999888743
No 332
>PRK12747 short chain dehydrogenase; Provisional
Probab=31.18 E-value=2.8e+02 Score=25.18 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=33.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~ 232 (372)
.+++.+++|--|.++|...+..|.++++...... +...+....++..|.++..+.
T Consensus 6 ~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 6 VALVTGASRGIGRAIAKRLANDGALVAIHYGNRK-EEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHHHhcCCceEEEe
Confidence 4455566788999999999999999877642211 112223345555676664443
No 333
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=31.16 E-value=1.5e+02 Score=29.05 Aligned_cols=55 Identities=20% Similarity=0.100 Sum_probs=37.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHH----HHcCCEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLM----KLLGAQVKAVD 232 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l----~~lGA~Vi~v~ 232 (372)
++..++-.+|...+++.+++++|++++++.|+.-.. +...+..+ +..|+++...+
T Consensus 150 ~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 150 KVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEP-DADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred EEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcC-CHHHHHHHHHHHHHcCCeEEEEc
Confidence 333433347899999999999999999999987532 22222232 45788886554
No 334
>PRK07102 short chain dehydrogenase; Provisional
Probab=31.15 E-value=1.9e+02 Score=26.17 Aligned_cols=56 Identities=9% Similarity=-0.056 Sum_probs=34.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHH-cCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKL-LGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~-lGA~Vi~v~~~ 234 (372)
++++.+++|.-|.++|......|.+++++..... ..+.....++. .+.++..+..+
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D 59 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVE--RLERLADDLRARGAVAVSTHELD 59 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHHHHHHHHhcCCeEEEEecC
Confidence 4555566789999999999999999887764421 11222223332 35577555443
No 335
>PRK05884 short chain dehydrogenase; Provisional
Probab=31.13 E-value=3.3e+02 Score=24.57 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=32.4
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHH-HHcCCEEEEEcC
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLM-KLLGAQVKAVDG 233 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l-~~lGA~Vi~v~~ 233 (372)
+++.+++|.-|.++|......|.+++++... .+++..+ +.++.+++.++-
T Consensus 3 vlItGas~giG~~ia~~l~~~g~~v~~~~r~------~~~~~~~~~~~~~~~~~~D~ 53 (223)
T PRK05884 3 VLVTGGDTDLGRTIAEGFRNDGHKVTLVGAR------RDDLEVAAKELDVDAIVCDN 53 (223)
T ss_pred EEEEeCCchHHHHHHHHHHHCCCEEEEEeCC------HHHHHHHHHhccCcEEecCC
Confidence 4455667889999999999999998887532 2232222 334556555554
No 336
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.09 E-value=2.7e+02 Score=27.12 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=34.7
Q ss_pred cCcchhhHHHHHHHHHHHHcCCCeEEEecCcchHHHHHHH--HHHHcCCcEEEEEcCCC
Q 017391 154 HVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAA--ACAKLALDCTVFMGTAD 210 (372)
Q Consensus 154 pTGSfKdRga~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~--aa~~~Gi~~~Iv~P~~~ 210 (372)
++.|...|............|+-.+|+-+++-|+--|+++ .|+..|.+.++++|.-.
T Consensus 52 ~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 52 PTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred hhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 4677888876544332223344445554434445555554 48889999999998744
No 337
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=31.07 E-value=3.6e+02 Score=24.32 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=25.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+.+++.+.+|.-|.++|......|.+++++..
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~ 40 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQ 40 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 35555566789999999999999999888854
No 338
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=30.86 E-value=1.5e+02 Score=29.56 Aligned_cols=47 Identities=9% Similarity=0.061 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHcCCcEEEEEc-CCCccccHHHHHH----HHHcCCEEEEEc
Q 017391 185 GQHGVATAAACAKLALDCTVFMG-TADMEKQSSKVLL----MKLLGAQVKAVD 232 (372)
Q Consensus 185 GN~G~AvA~aa~~~Gi~~~Iv~P-~~~~~~~~~k~~~----l~~lGA~Vi~v~ 232 (372)
+|...+++.+++++|++++++.| ++-.. .+.-+.+ .+..|.+|....
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYIL-DERYMDWAEQNAAESGGSLTVSH 236 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCC-CHHHHHHHHHHHHHcCCeEEEEc
Confidence 37899999999999999999999 65421 2222222 345688886554
No 339
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.78 E-value=2.7e+02 Score=25.82 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=19.6
Q ss_pred cchHHHHHHHHHHHcCCcEEEEEc
Q 017391 184 AGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 184 sGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++--|.++|...+..|.++++...
T Consensus 17 ~~GIG~a~a~~l~~~G~~v~~~~~ 40 (261)
T PRK08690 17 ERSIAYGIAKACREQGAELAFTYV 40 (261)
T ss_pred CCcHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999999999888643
No 340
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=30.69 E-value=2.6e+02 Score=25.68 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=26.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
+.+++.+++|.-|.++|......|.+++++...
T Consensus 10 k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 10 KIIIVTGGSSGIGLAIVKELLANGANVVNADIH 42 (266)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 355555667899999999999999998887643
No 341
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=30.66 E-value=1.7e+02 Score=28.58 Aligned_cols=49 Identities=22% Similarity=0.182 Sum_probs=33.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHH-HcCCEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMK-LLGAQVKA 230 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~-~lGA~Vi~ 230 (372)
+++++.+.+|--|.+++..|+.+|.++++... ..+|...++ .+|++-+.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~------~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG------SSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcC------CHHHHHHHHHhcCCCEEE
Confidence 35555455588999999899999998655432 245666676 69986543
No 342
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=30.63 E-value=2.9e+02 Score=23.67 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHcCCCeEEEecCcchHHHHH-HHHHHHcCCcEEEEEcCCCccc---cHHHHHHHHHcCCEEE
Q 017391 171 KRMGRKSIVAATGAGQHGVAT-AAACAKLALDCTVFMGTADMEK---QSSKVLLMKLLGAQVK 229 (372)
Q Consensus 171 ~~~g~~~~V~~aSsGN~G~Av-A~aa~~~Gi~~~Iv~P~~~~~~---~~~k~~~l~~lGA~Vi 229 (372)
++.|.+++|+++-..|.+... |..+...|++++++........ ...-+..|+..|++|+
T Consensus 84 ~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as~~~~~h~~al~~~~~~~~~v~ 146 (157)
T cd01012 84 KATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGSRSKEDHELALARMRQAGAVLT 146 (157)
T ss_pred HhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCCCCHHHHHHHHHHHHHCCCEEe
Confidence 356888888876667777644 4447779999998875432211 2345667788888885
No 343
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=30.54 E-value=82 Score=34.00 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=36.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCc-------------c--ccHHHHHHHHHcCCEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADM-------------E--KQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~-------------~--~~~~k~~~l~~lGA~Vi~ 230 (372)
++++. ++|-.|.+.|+..++.|.+++||=..... + .....+..++.+|.+++.
T Consensus 312 kVaII-G~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 379 (639)
T PRK12809 312 KVAVI-GAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHL 379 (639)
T ss_pred EEEEE-CcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEc
Confidence 44443 68999999999999999999888433211 0 011245678889988743
No 344
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=30.51 E-value=56 Score=30.91 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=24.6
Q ss_pred CCEEEEcCCchhHHHhhhhhhcCCCCcEEEEEecCCCC
Q 017391 293 PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFG 330 (372)
Q Consensus 293 pd~vvvpvG~GG~laGi~~~~~~~~~vrvigVe~~gs~ 330 (372)
.|+|||.+|.||.+.+-- +.+.+..+|..+|.....
T Consensus 1 yD~iIVGsG~~G~v~A~r--Ls~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASR--LSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHH--HTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHH--HhhCCCCcEEEEEccccC
Confidence 389999999888665432 234566899999998764
No 345
>PRK08339 short chain dehydrogenase; Provisional
Probab=30.29 E-value=2.5e+02 Score=26.01 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=24.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++|.-|.++|...+..|.+++++..
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 10 LAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 4455566688999999999999999877653
No 346
>PRK07577 short chain dehydrogenase; Provisional
Probab=30.19 E-value=3.9e+02 Score=23.71 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=26.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
.+++.+++|-.|.++|......|.+++++...
T Consensus 5 ~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~ 36 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLGHQVIGIARS 36 (234)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 45555667899999999999999998888654
No 347
>PRK06196 oxidoreductase; Provisional
Probab=30.10 E-value=3.5e+02 Score=25.79 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=24.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++|--|.++|......|.+++++..
T Consensus 28 ~vlITGasggIG~~~a~~L~~~G~~Vv~~~R 58 (315)
T PRK06196 28 TAIVTGGYSGLGLETTRALAQAGAHVIVPAR 58 (315)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 5555566688999999998889999877653
No 348
>PRK09126 hypothetical protein; Provisional
Probab=30.07 E-value=63 Score=31.93 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=22.2
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEE
Q 017391 183 GAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
++|-.|.++|.+.++.|++++|+=
T Consensus 10 GgG~aGl~~A~~L~~~G~~v~v~E 33 (392)
T PRK09126 10 GAGPAGLSFARSLAGSGLKVTLIE 33 (392)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEe
Confidence 689999999999999999998884
No 349
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.03 E-value=3.5e+02 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=24.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++|.-|.++|......|.++++...
T Consensus 7 ~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 7 TVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 5555567799999999999999999887653
No 350
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=29.86 E-value=2.8e+02 Score=25.04 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=40.3
Q ss_pred HHcCCCeEEEecCcchHHHH-HHHHHHHcCCcEEEEEcCCCcc-----ccHHHHHHHHHcCCEEE
Q 017391 171 KRMGRKSIVAATGAGQHGVA-TAAACAKLALDCTVFMGTADME-----KQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 171 ~~~g~~~~V~~aSsGN~G~A-vA~aa~~~Gi~~~Iv~P~~~~~-----~~~~k~~~l~~lGA~Vi 229 (372)
++.|.+++|+++-..|.++. +|..|..+|++++|+-...... .....+..|...|++|+
T Consensus 138 ~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~ 202 (212)
T PRK11609 138 REHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLY 202 (212)
T ss_pred HHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEE
Confidence 46688888887666887765 4555777999999887643221 11335667777888886
No 351
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=29.85 E-value=1.7e+02 Score=32.40 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEE--EEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHH
Q 017391 164 IGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTV--FMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSE 241 (372)
Q Consensus 164 ~~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~I--v~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~ 241 (372)
...+...+++|.+.+++ +|++-......|+.+||+=+. ++|+++ .+.++.++.-|..|..|++...|+-..
T Consensus 543 ~~aI~~L~~~Gi~~~mL---TGDn~~~A~~iA~~lGId~v~AellPedK----~~~V~~l~~~g~~VamVGDGINDAPAL 615 (713)
T COG2217 543 KEAIAALKALGIKVVML---TGDNRRTAEAIAKELGIDEVRAELLPEDK----AEIVRELQAEGRKVAMVGDGINDAPAL 615 (713)
T ss_pred HHHHHHHHHCCCeEEEE---cCCCHHHHHHHHHHcChHhheccCCcHHH----HHHHHHHHhcCCEEEEEeCCchhHHHH
Confidence 33445566788885554 688888888889999984332 245544 456778888888999999888777655
Q ss_pred H
Q 017391 242 A 242 (372)
Q Consensus 242 a 242 (372)
+
T Consensus 616 A 616 (713)
T COG2217 616 A 616 (713)
T ss_pred h
Confidence 4
No 352
>PRK06475 salicylate hydroxylase; Provisional
Probab=29.82 E-value=74 Score=31.78 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=24.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++++. ++|-.|.++|.+.++.|++++|+=.
T Consensus 4 ~V~Iv-GgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 4 SPLIA-GAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred cEEEE-CCCHHHHHHHHHHHhCCCcEEEEec
Confidence 44443 6899999999999999999988853
No 353
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=29.74 E-value=1.6e+02 Score=33.95 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=35.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCc-------------c--ccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADM-------------E--KQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~-------------~--~~~~k~~~l~~lGA~Vi 229 (372)
.+++. ++|-.|.++|+..++.|.+++|+=..... + .....+.+++.+|.+++
T Consensus 541 kVaII-GgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~ 607 (1019)
T PRK09853 541 KVAVI-GAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFE 607 (1019)
T ss_pred cEEEE-CCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEE
Confidence 34444 68999999999999999999988543210 0 01223456777888874
No 354
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=29.73 E-value=2.9e+02 Score=26.99 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=32.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
+++++. ++|..|.+++..++.+|.+.++.+-. ..+++..++.+|+.-
T Consensus 186 ~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~-----~~~~~~~~~~~ga~~ 232 (365)
T cd08277 186 STVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI-----NEDKFEKAKEFGATD 232 (365)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHHHHcCCCc
Confidence 344544 57999999999999999953343322 245667778899854
No 355
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=29.71 E-value=3.4e+02 Score=26.08 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=23.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcC-CcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLA-LDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~G-i~~~Iv~P 207 (372)
++++.++++--|.++|...+..| .+++++..
T Consensus 5 ~vlITGas~GIG~aia~~L~~~G~~~V~l~~r 36 (314)
T TIGR01289 5 TVIITGASSGLGLYAAKALAATGEWHVIMACR 36 (314)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCEEEEEeC
Confidence 45555556778889998888899 88877754
No 356
>PRK05599 hypothetical protein; Provisional
Probab=29.65 E-value=3.4e+02 Score=24.84 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=27.3
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCC
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGA 226 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA 226 (372)
+++.++++.-|.++|...+ .|.+++++-... ++.++-...++..|.
T Consensus 3 vlItGas~GIG~aia~~l~-~g~~Vil~~r~~--~~~~~~~~~l~~~~~ 48 (246)
T PRK05599 3 ILILGGTSDIAGEIATLLC-HGEDVVLAARRP--EAAQGLASDLRQRGA 48 (246)
T ss_pred EEEEeCccHHHHHHHHHHh-CCCEEEEEeCCH--HHHHHHHHHHHhccC
Confidence 4444556778888888877 488877765332 112333345555564
No 357
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=29.65 E-value=1.6e+02 Score=30.67 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=26.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTAD 210 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~ 210 (372)
.+++. ++|+.|.-+|...+..+.+++++.+...
T Consensus 353 ~VvVV-GgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 353 RVAVI-GGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred EEEEE-CCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 44443 6899999999999999999999987654
No 358
>PRK09186 flagellin modification protein A; Provisional
Probab=29.62 E-value=4.2e+02 Score=23.89 Aligned_cols=31 Identities=16% Similarity=-0.016 Sum_probs=24.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++++.+++|.-|.++|......|.+++++..
T Consensus 6 ~vlItGas~giG~~~a~~l~~~g~~v~~~~r 36 (256)
T PRK09186 6 TILITGAGGLIGSALVKAILEAGGIVIAADI 36 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEec
Confidence 4555566789999999999999999877754
No 359
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=29.49 E-value=80 Score=32.43 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=25.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+|++ ++|=-|.|.|.+.+++|++++|+=-
T Consensus 4 ~VvIv-GgGI~Gla~A~~l~r~G~~v~VlE~ 33 (420)
T KOG2614|consen 4 KVVIV-GGGIVGLATALALHRKGIDVVVLES 33 (420)
T ss_pred cEEEE-CCcHHHHHHHHHHHHcCCeEEEEee
Confidence 45554 6899999999999999999999853
No 360
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=29.34 E-value=2.3e+02 Score=27.89 Aligned_cols=50 Identities=24% Similarity=0.289 Sum_probs=34.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV 231 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v 231 (372)
+.+++-+.+|.-|..+...|+.+|..+++... ..+|...++.+||..+..
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~------s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGATVVAVVS------SSEKLELLKELGADHVIN 193 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCCcEEEEec------CHHHHHHHHhcCCCEEEc
Confidence 45555566788888888889999984444432 235666899999976544
No 361
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=29.34 E-value=1.7e+02 Score=28.71 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=35.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCc-EEEEEcCCCc--cccHHHHHHHHHcCCEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALD-CTVFMGTADM--EKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~-~~Iv~P~~~~--~~~~~k~~~l~~lGA~Vi~ 230 (372)
.+|+. ++|+.|.-+|......|.+ ++|+.+.... ......+..|+..|.+++.
T Consensus 174 ~vvVi-G~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~ 229 (352)
T PRK12770 174 KVVVV-GAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLE 229 (352)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEee
Confidence 45543 6899999999888888997 8888764311 1112344567788877743
No 362
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=29.32 E-value=1.5e+02 Score=26.97 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=24.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++++.+++|.-|.++|......|.+++++..
T Consensus 14 ~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r 44 (247)
T PRK08945 14 IILVTGAGDGIGREAALTYARHGATVILLGR 44 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCcEEEEeC
Confidence 4555566799999999998889998877654
No 363
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=29.32 E-value=2.1e+02 Score=29.47 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=36.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCcc---------------ccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADME---------------KQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~---------------~~~~k~~~l~~lGA~Vi 229 (372)
.+++. ++|-.|.++|..+++.|.+++|+-.....- .....+.+++.+|.+++
T Consensus 145 ~VvII-GaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~ 211 (471)
T PRK12810 145 KVAVV-GSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFR 211 (471)
T ss_pred EEEEE-CcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 45554 689999999999999999999986432110 01234567888898874
No 364
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=29.27 E-value=1.4e+02 Score=28.93 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=31.2
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
+.|..|.+++..++.+|.+++++-.. ..+..+.+.+|++.+
T Consensus 159 G~G~iG~~~a~~L~~~Ga~V~v~~r~------~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 159 GFGRTGMTLARTLKALGANVTVGARK------SAHLARITEMGLSPF 199 (296)
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEECC------HHHHHHHHHcCCeee
Confidence 68999999999999999877776432 234556778898764
No 365
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=29.21 E-value=2.3e+02 Score=26.39 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=32.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 227 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~ 227 (372)
+.+++.+.+|..|.+++..|+.+|.+++..... .++...++.+|+.
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~ 179 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAGAHVVAVVGS------PARAEGLRELGAA 179 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCc
Confidence 455555555899999999999999986555322 3466677778875
No 366
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=29.19 E-value=2.8e+02 Score=25.41 Aligned_cols=60 Identities=17% Similarity=0.067 Sum_probs=40.1
Q ss_pred HHHcCCCeEEEecCcchHHHHHHHH-HHHcCCcEEEEEcCCCcc---ccHHHHHHHHHcCCEEE
Q 017391 170 AKRMGRKSIVAATGAGQHGVATAAA-CAKLALDCTVFMGTADME---KQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 170 a~~~g~~~~V~~aSsGN~G~AvA~a-a~~~Gi~~~Iv~P~~~~~---~~~~k~~~l~~lGA~Vi 229 (372)
.++.|.+.+|+++-..|.++.-... +...|++++|+-...... ..+.-+..|+..|++|+
T Consensus 141 L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~ 204 (212)
T PTZ00331 141 LKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILL 204 (212)
T ss_pred HHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEE
Confidence 3466888888876668888755444 667999998886432211 12334667788888875
No 367
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=29.18 E-value=2.2e+02 Score=23.38 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=34.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~ 232 (372)
+++++ +.+|-.+.-+..+|+.+|+++++++...+. .. .-..+--+++..+
T Consensus 3 kkvLI-anrGeia~r~~ra~r~~Gi~tv~v~s~~d~--~s----~~~~~ad~~~~~~ 52 (110)
T PF00289_consen 3 KKVLI-ANRGEIAVRIIRALRELGIETVAVNSNPDT--VS----THVDMADEAYFEP 52 (110)
T ss_dssp SEEEE-SS-HHHHHHHHHHHHHTTSEEEEEEEGGGT--TG----HHHHHSSEEEEEE
T ss_pred CEEEE-ECCCHHHHHHHHHHHHhCCcceeccCchhc--cc----ccccccccceecC
Confidence 34555 578999999999999999999999875431 11 2233456777776
No 368
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.14 E-value=1.8e+02 Score=29.97 Aligned_cols=51 Identities=31% Similarity=0.454 Sum_probs=33.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
++++ -+.|-.|.++|.+.+..|.+++++-.... .........++..|.++.
T Consensus 18 ~v~v-iG~G~~G~~~A~~L~~~G~~V~~~d~~~~-~~~~~~~~~l~~~gv~~~ 68 (480)
T PRK01438 18 RVVV-AGLGVSGFAAADALLELGARVTVVDDGDD-ERHRALAAILEALGATVR 68 (480)
T ss_pred EEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCCch-hhhHHHHHHHHHcCCEEE
Confidence 3444 36899999999999999999887743321 111223345777786653
No 369
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=28.95 E-value=4.8e+02 Score=27.27 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 165 GQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 165 ~~~~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
..+..|...+.+.+|+.+.||.++..+|.. +..++++++.|.
T Consensus 364 ~a~~~a~~~~akaIVv~T~SG~TA~~vSr~--rp~~PIiAvT~~ 405 (473)
T TIGR01064 364 SAVEAAEKLDAKAIVVLTESGRTARLLSKY--RPNAPIIAVTPN 405 (473)
T ss_pred HHHHHHhhcCCCEEEEEcCChHHHHHHHhh--CCCCCEEEEcCC
Confidence 333344445555556555556665555433 455555555554
No 370
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=28.94 E-value=1.8e+02 Score=31.53 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=34.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCC-cEEEEEcCCC--ccccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLAL-DCTVFMGTAD--MEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi-~~~Iv~P~~~--~~~~~~k~~~l~~lGA~Vi 229 (372)
++|+. ++||.|.-+|..+.++|. +++++++... .+.....+......|.+++
T Consensus 325 ~VvVI-GgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~ 379 (652)
T PRK12814 325 KVVVI-GGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLR 379 (652)
T ss_pred eEEEE-CCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEE
Confidence 44444 689999999999999997 4888886542 1112233444455677764
No 371
>PRK08703 short chain dehydrogenase; Provisional
Probab=28.90 E-value=1.7e+02 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=25.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
+++++.+++|.-|.++|......|.+++++...
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARH 39 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 355565677999999999999999998777543
No 372
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=28.90 E-value=1.8e+02 Score=25.02 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=38.7
Q ss_pred HHHcCCCeEEEecCcchHHHH-HHHHHHHcCCcEEEEEcCC---CccccHHHHHHHHHcCCEEEE
Q 017391 170 AKRMGRKSIVAATGAGQHGVA-TAAACAKLALDCTVFMGTA---DMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 170 a~~~g~~~~V~~aSsGN~G~A-vA~aa~~~Gi~~~Iv~P~~---~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
.++.|.+.+|+++-..+.++. +|..+...|++++|+-... .....+.-+..|+..|++|+.
T Consensus 107 L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~~h~~~l~~l~~~~~~v~t 171 (174)
T PF00857_consen 107 LRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDACASYSPEAHEAALEELRKRGAEVIT 171 (174)
T ss_dssp HHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEEEBSSHHHHHHHHHHHHHHTSEEE-
T ss_pred ccccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhhcCCCHHHHHHHHHHHHhCCCEEEe
Confidence 346788888887666777764 4444777999999886421 111234556677788888863
No 373
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=28.90 E-value=4e+02 Score=23.36 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=39.8
Q ss_pred CeEEEecCcchHHHHHHHHHHH-cCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC---chhHHHHHHHHHHHhc
Q 017391 176 KSIVAATGAGQHGVATAAACAK-LALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRNWVGN 249 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~-~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~---~~~da~~~a~~~~~~~ 249 (372)
+..|+.+++ |..++.+|.+ .|++|.++..... .+ ..-+...|||+..++ +.+.+.+.+ +.|.+.
T Consensus 60 ~~GIliCGt---GiG~siaANK~~GIRAA~~~d~~~-----A~-~ar~hNnaNVL~lG~r~ig~~~a~~iv-~~fl~t 127 (148)
T PRK05571 60 DRGILICGT---GIGMSIAANKVKGIRAALCHDTYS-----AH-LAREHNNANVLALGARVIGPELAKDIV-DAFLAT 127 (148)
T ss_pred CEEEEEcCC---cHHHHHHHhcCCCeEEEEECCHHH-----HH-HHHHhcCCcEEEECccccCHHHHHHHH-HHHHcC
Confidence 455555553 5778888888 9999999863221 22 122356899999887 344444333 566653
No 374
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=28.89 E-value=1.8e+02 Score=27.57 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=32.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
+++++. ++|-.|.+++..|+.+|.+++++.. ..++...++.+|+..
T Consensus 157 ~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~~------~~~~~~~~~~~g~~~ 202 (319)
T cd08242 157 DKVAVL-GDGKLGLLIAQVLALTGPDVVLVGR------HSEKLALARRLGVET 202 (319)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCeEEEEcC------CHHHHHHHHHcCCcE
Confidence 355554 4789999999999999999554422 235666777789865
No 375
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.83 E-value=5.5e+02 Score=24.98 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=37.1
Q ss_pred CCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHH-HHHHHcC-CE-EEEEcC
Q 017391 174 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKV-LLMKLLG-AQ-VKAVDG 233 (372)
Q Consensus 174 g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~-~~l~~lG-A~-Vi~v~~ 233 (372)
|+-.+|+ +.|.--|.++|+.-++.|.+.+++..... .-+++ +.++..| .+ |+....
T Consensus 12 ~kvVvIT-GASsGIG~~lA~~la~~G~~l~lvar~~r---rl~~v~~~l~~~~~~~~v~~~~~ 70 (282)
T KOG1205|consen 12 GKVVLIT-GASSGIGEALAYELAKRGAKLVLVARRAR---RLERVAEELRKLGSLEKVLVLQL 70 (282)
T ss_pred CCEEEEe-CCCcHHHHHHHHHHHhCCCceEEeehhhh---hHHHHHHHHHHhCCcCccEEEeC
Confidence 4434444 44455899999999999999999987644 33444 6666666 44 555444
No 376
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=28.66 E-value=1.2e+02 Score=28.42 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=25.7
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
+++.+++|+.|..++......|.+++++...
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~ 32 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPFLVASRS 32 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCcEEEEeCC
Confidence 4455677999999999988899999988764
No 377
>PLN02527 aspartate carbamoyltransferase
Probab=28.57 E-value=2e+02 Score=28.27 Aligned_cols=47 Identities=9% Similarity=-0.072 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHc-CCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 186 QHGVATAAACAKL-ALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 186 N~G~AvA~aa~~~-Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
|.+.+++.+++++ |+++++..|++-.. ++.-+..++..|.++...+.
T Consensus 164 rv~~Sl~~~~~~~~g~~v~~~~P~~~~~-~~~~~~~~~~~g~~~~~~~d 211 (306)
T PLN02527 164 RTVRSLAYLLAKYEDVKIYFVAPDVVKM-KDDIKDYLTSKGVEWEESSD 211 (306)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCccCC-CHHHHHHHHHcCCEEEEEcC
Confidence 5899999998886 99999999987421 23344455667877765543
No 378
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=28.46 E-value=2.1e+02 Score=28.17 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=33.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
+.+++. ++|-.|.+++..|+.+|.+.++.+.. ...|+..++.+|++.+
T Consensus 193 ~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~~~-----~~~r~~~a~~~Ga~~~ 240 (371)
T cd08281 193 QSVAVV-GLGGVGLSALLGAVAAGASQVVAVDL-----NEDKLALARELGATAT 240 (371)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC-----CHHHHHHHHHcCCceE
Confidence 345554 57889999888899999954444322 2456777888999654
No 379
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=28.36 E-value=2e+02 Score=27.56 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=32.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
..+++.+.+|..|.+++..|+.+|+++++.... .++...++.+|++-+
T Consensus 167 ~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~v 214 (341)
T cd08297 167 DWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG------DEKLELAKELGADAF 214 (341)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC------HHHHHHHHHcCCcEE
Confidence 455554445679999999999999987666433 234556677887543
No 380
>PRK06101 short chain dehydrogenase; Provisional
Probab=28.25 E-value=4.1e+02 Score=23.98 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=24.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++|.-|.++|......|.+++++-.
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGR 33 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEEC
Confidence 4555566789999999998889999777643
No 381
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=28.23 E-value=1.6e+02 Score=27.78 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=33.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
+++++.+.+|..|.+++..|+.+|+++++.... .++...++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~v 195 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTGK------ADAADYLKKLGAKEV 195 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC------HHHHHHHHHcCCCEE
Confidence 355555555999999999999999986655432 345566778897443
No 382
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=28.22 E-value=3.4e+02 Score=24.47 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=39.5
Q ss_pred CeEEEecCcchHHHHHHHHHHH-cCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC---chhHHHHHHHHHHHh
Q 017391 176 KSIVAATGAGQHGVATAAACAK-LALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRNWVG 248 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~-~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~---~~~da~~~a~~~~~~ 248 (372)
+..|+.++ +|..++.+|.+ .||+|-++.-... .+ ..-+-..|||+..++ +.+.+...+ +.|..
T Consensus 59 ~~GIliCG---TGiG~siaANKv~GIRAAl~~d~~s-----A~-~ar~hNnaNVL~lGarvig~e~a~~Iv-~~fL~ 125 (171)
T TIGR01119 59 DLGVCICG---TGVGINNAVNKVPGVRSALVRDMTS-----AL-YAKEELNANVIGFGGAIIGKLLMFDII-DAFIK 125 (171)
T ss_pred CEEEEEcC---CcHHHHHHHhcCCCeEEEEeCCHHH-----HH-HHHHhcCCcEEEECccccCHHHHHHHH-HHHHc
Confidence 45555455 46778888888 9999999863321 22 122356899998887 344544333 55654
No 383
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=28.20 E-value=2.6e+02 Score=27.64 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=41.0
Q ss_pred EEEEcCCCccccHHHHHHHHHcCCEEEEEcC-chhH--HHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHH
Q 017391 203 TVFMGTADMEKQSSKVLLMKLLGAQVKAVDG-CFKE--ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGK 279 (372)
Q Consensus 203 ~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~-~~~d--a~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~ 279 (372)
.|++..+..++ --..++.+| ++..|.+ .+.. ..+.....+.+. .-.+.+.+.. ..+|-... -.
T Consensus 3 ~i~~G~g~l~~---l~~~l~~~g-r~lvVt~~~~~~~~~~~~v~~~L~~~-~i~~~~~~~~-~~~p~~~~--------v~ 68 (366)
T PF00465_consen 3 KIIFGRGALEE---LGEELKRLG-RVLVVTDPSLSKSGLVDRVLDALEEA-GIEVQVFDGV-GPNPTLED--------VD 68 (366)
T ss_dssp EEEESTTGGGG---HHHHHHCTT-EEEEEEEHHHHHHTHHHHHHHHHHHT-TCEEEEEEEE-SSS-BHHH--------HH
T ss_pred cEEEccCHHHH---HHHHHHhcC-CEEEEECchHHhCccHHHHHHHHhhC-ceEEEEEecC-CCCCcHHH--------HH
Confidence 46676665332 233577778 8866654 3322 233443333232 2223232222 23433211 24
Q ss_pred HHHHHHHHHhCCCCCEEEEcCCchhHH
Q 017391 280 ETRKQAMEKWGGKPDVLLACVGSGSNA 306 (372)
Q Consensus 280 Ei~~Ql~~~~g~~pd~vvvpvG~GG~l 306 (372)
++.+++.+ . .+| +|+.+|||+.+
T Consensus 69 ~~~~~~~~-~--~~D-~IIaiGGGS~~ 91 (366)
T PF00465_consen 69 EAAEQARK-F--GAD-CIIAIGGGSVM 91 (366)
T ss_dssp HHHHHHHH-T--TSS-EEEEEESHHHH
T ss_pred HHHHHHHh-c--CCC-EEEEcCCCCcC
Confidence 55666543 2 367 45668888866
No 384
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=27.90 E-value=1.7e+02 Score=28.48 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=31.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCC-cEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLAL-DCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi-~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
.+++. ++|..|.+++..|+.+|+ +++++.+ ..++...++.+|+.-
T Consensus 180 ~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~~------~~~~~~~~~~~g~~~ 225 (361)
T cd08231 180 TVVVQ-GAGPLGLYAVAAAKLAGARRVIVIDG------SPERLELAREFGADA 225 (361)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC------CHHHHHHHHHcCCCe
Confidence 45554 479999999999999999 5554422 234566778888753
No 385
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=27.82 E-value=2.7e+02 Score=28.34 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=36.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccc------cHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEK------QSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~------~~~k~~~l~~lGA~Vi 229 (372)
+++++. ++|..|.-+|...+..|.+++++.+....-. ...-.+.++..|.+|+
T Consensus 176 ~~v~Ii-GgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~ 234 (461)
T PRK05249 176 RSLIIY-GAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIR 234 (461)
T ss_pred CeEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 344544 6899999999999999999999986543210 1222345666777663
No 386
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=27.82 E-value=2.8e+02 Score=27.83 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=37.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
..|+..+.|-.|......|+.+|.+++.+-- ..+|++..+.+||+.+....
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~------~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITR------SEEKLELAKKLGADHVINSS 218 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeC------ChHHHHHHHHhCCcEEEEcC
Confidence 3344456787777777778889988887742 35678889999999977765
No 387
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=27.70 E-value=78 Score=27.81 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=25.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTA 209 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~ 209 (372)
+.+++. ++|++|.-+|......|-++++++.+.
T Consensus 168 k~V~VV-G~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVV-GGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE---SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CcEEEE-cChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 455554 689999999999999999999998653
No 388
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=27.61 E-value=2.1e+02 Score=28.49 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=36.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHH----HcCCEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMK----LLGAQVKAVD 232 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~----~lGA~Vi~v~ 232 (372)
++..++-..|.+.+++.+++++|++++++.|++-.. +..-+..++ ..|++|...+
T Consensus 156 kv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 156 KVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQL-PEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EEEEECCCchHHHHHHHHHHhCCCEEEEECCCcccc-CHHHHHHHHHHHHhcCCeEEEEc
Confidence 444443335899999999999999999999986421 222233332 3588776554
No 389
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=27.52 E-value=2.5e+02 Score=26.45 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=34.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
+.+++.+.+|..|.+++..|+.+|.+++++.. .++|...++.+|++-+
T Consensus 148 ~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~------~~~~~~~~~~~g~~~~ 195 (324)
T cd08288 148 GPVLVTGAAGGVGSVAVALLARLGYEVVASTG------RPEEADYLRSLGASEI 195 (324)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC------CHHHHHHHHhcCCCEE
Confidence 35555555699999999999999998766643 2356667788998543
No 390
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=27.49 E-value=1.6e+02 Score=28.89 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=29.5
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
+.||.|.|+|......|+++++..+... .+...++..|.++
T Consensus 10 G~G~mG~AiA~~L~~sG~~Viv~~~~~~-----~~~~~a~~~Gv~~ 50 (314)
T TIGR00465 10 GYGSQGHAQALNLRDSGLNVIVGLRKGG-----ASWKKATEDGFKV 50 (314)
T ss_pred eEcHHHHHHHHHHHHCCCeEEEEECcCh-----hhHHHHHHCCCEE
Confidence 6899999999999999998766665432 2333455677753
No 391
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=27.43 E-value=6.4e+02 Score=25.29 Aligned_cols=72 Identities=8% Similarity=-0.042 Sum_probs=37.9
Q ss_pred CcchhhHHHHHHHHHHHHcCC-CeEEEecCcchHHHHHHHHHH-HcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEc
Q 017391 155 VGAHKINNAIGQAMIAKRMGR-KSIVAATGAGQHGVATAAACA-KLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 155 TGSfKdRga~~~~~~a~~~g~-~~~V~~aSsGN~G~AvA~aa~-~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~ 232 (372)
.|....|.++.... ....+. +.+++ +++++.+..++..+- ..|=.+.+--|.- ..-...++.+|++|+.++
T Consensus 121 ~g~~~lr~~ia~~~-~~~~~~~~~Iii-t~G~~~al~~~~~~l~~pgd~Vlv~~P~y-----~~~~~~~~~~g~~~~~v~ 193 (431)
T PRK15481 121 PVSPELHAWAARWL-RDDCPVAFEIDL-TSGAIDAIERLLCAHLLPGDSVAVEDPCF-----LSSINMLRYAGFSASPVS 193 (431)
T ss_pred CCCHHHHHHHHHHH-hhccCCcCeEEE-ecCcHHHHHHHHHHhCCCCCEEEEeCCCc-----HHHHHHHHHcCCeEEeec
Confidence 45455665544332 111122 35555 456677777665543 3554333333321 234557788999998775
Q ss_pred C
Q 017391 233 G 233 (372)
Q Consensus 233 ~ 233 (372)
-
T Consensus 194 ~ 194 (431)
T PRK15481 194 V 194 (431)
T ss_pred c
Confidence 3
No 392
>PF09338 Gly_reductase: Glycine/sarcosine/betaine reductase component B subunits; InterPro: IPR015417 This is a family of glycine reductase, sarcosine reductase and betaine reductases. These enzymes catalyse the following reactions: sarcosine reductase: Acetyl phosphate + methylamine + thioredoxin disulphide = N-methylglycine + phosphate + thioredoxin. glycine reductase: Acetyl phosphate + NH3 + thioredoxin disulphide = glycine + phosphate + thioredoxin. betaine reductase: Acetyl phosphate + trimethylamine + thioredoxin disulphide = N,N,N-trimethylglycine + phosphate + thioredoxin. ; GO: 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process
Probab=27.41 E-value=1.9e+02 Score=29.83 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=38.5
Q ss_pred cCcchhhHHHHHHHHHHHHcCCCeEEEecC-cchHHHHHHHHHH---HcCCcEEEEEcC
Q 017391 154 HVGAHKINNAIGQAMIAKRMGRKSIVAATG-AGQHGVATAAACA---KLALDCTVFMGT 208 (372)
Q Consensus 154 pTGSfKdRga~~~~~~a~~~g~~~~V~~aS-sGN~G~AvA~aa~---~~Gi~~~Iv~P~ 208 (372)
.+...|.|.+......|+..|.+.+|+..- -||.=.=+++.|. +.||+++.+..+
T Consensus 283 ~~~~~K~r~s~~~~~la~~LgaDGaIvs~eG~GN~d~D~~~~~~~~e~~GIktV~it~e 341 (428)
T PF09338_consen 283 VTLADKERVSQRAAKLAEMLGADGAIVSEEGFGNPDVDFAMNIEEIEKRGIKTVGITDE 341 (428)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCEEEEEecCCCchhHHHHHHHHHHHHCCCCEEEecce
Confidence 345679998888877888888876555433 3886666666544 488999888653
No 393
>PRK06847 hypothetical protein; Provisional
Probab=27.29 E-value=93 Score=30.43 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=24.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
.+++. ++|-.|.++|..+++.|++++|+=
T Consensus 6 ~V~IV-GaG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 6 KVLIV-GGGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred eEEEE-CCCHHHHHHHHHHHhCCCCEEEEe
Confidence 44444 689999999999999999998883
No 394
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=27.27 E-value=2.6e+02 Score=26.87 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=32.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
+.+++. ++|..|.+++..|+.+|.+.++++.. ...+...++.+|++.
T Consensus 177 ~~vlI~-g~g~vg~~~~~~a~~~G~~~v~~~~~-----~~~~~~~~~~~g~~~ 223 (350)
T cd08240 177 EPVVII-GAGGLGLMALALLKALGPANIIVVDI-----DEAKLEAAKAAGADV 223 (350)
T ss_pred CEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHHHHhCCcE
Confidence 355554 57999999999999999965544422 234566677788754
No 395
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=27.24 E-value=1.7e+02 Score=30.05 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=32.0
Q ss_pred ecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 181 ATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 181 ~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
..+.|.-|..+|..++.+|.+++++=+ .+.+....+.+|++++
T Consensus 207 ViG~G~IG~~va~~ak~~Ga~ViV~d~------d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 207 VAGYGDVGKGCAQSLRGQGARVIVTEV------DPICALQAAMEGYEVM 249 (413)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEEC------ChhhHHHHHhcCCEEc
Confidence 347899999999999999998666422 2345567778898764
No 396
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=27.19 E-value=1.7e+02 Score=30.43 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=35.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCc-------------c--ccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADM-------------E--KQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~-------------~--~~~~k~~~l~~lGA~Vi 229 (372)
.+++. ++|-.|.++|...++.|.+++|+-..... + .....+.+++.+|.+++
T Consensus 145 ~V~II-GaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~ 211 (485)
T TIGR01317 145 KVAVV-GSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFV 211 (485)
T ss_pred EEEEE-CCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEE
Confidence 44544 68999999999999999999998533211 0 11233456788898874
No 397
>PRK06753 hypothetical protein; Provisional
Probab=27.13 E-value=79 Score=30.97 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=23.8
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEE
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
++++ ++|-.|.++|.+.++.|++++|+=
T Consensus 3 V~Iv-GgG~aGl~~A~~L~~~g~~v~v~E 30 (373)
T PRK06753 3 IAII-GAGIGGLTAAALLQEQGHEVKVFE 30 (373)
T ss_pred EEEE-CCCHHHHHHHHHHHhCCCcEEEEe
Confidence 4443 689999999999999999998874
No 398
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=27.12 E-value=72 Score=31.12 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.1
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
++|-.|.++|++.++.|++++|+=..
T Consensus 6 GaG~aGl~~A~~L~~~G~~v~v~Er~ 31 (385)
T TIGR01988 6 GGGMVGLALALALARSGLKIALIEAT 31 (385)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 68999999999999999999888543
No 399
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=27.11 E-value=2.3e+02 Score=26.71 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=31.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
.+++...+|..|.+++..|+.+|.++++.... .++...++.+|++-
T Consensus 142 ~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~------~~~~~~~~~~g~~~ 187 (324)
T cd08292 142 WLIQNAAGGAVGKLVAMLAAARGINVINLVRR------DAGVAELRALGIGP 187 (324)
T ss_pred EEEEcccccHHHHHHHHHHHHCCCeEEEEecC------HHHHHHHHhcCCCE
Confidence 44444446889999999999999987766533 23444566678743
No 400
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=26.91 E-value=2.6e+02 Score=25.60 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=37.2
Q ss_pred CCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchh
Q 017391 174 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK 236 (372)
Q Consensus 174 g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~ 236 (372)
|+ .+++. ++|.-|..-+......|-+++|+-|+.. ..+..+...| +|..+.+.|.
T Consensus 9 gk-~vlVv-GgG~va~rk~~~Ll~~ga~VtVvsp~~~-----~~l~~l~~~~-~i~~~~~~~~ 63 (205)
T TIGR01470 9 GR-AVLVV-GGGDVALRKARLLLKAGAQLRVIAEELE-----SELTLLAEQG-GITWLARCFD 63 (205)
T ss_pred CC-eEEEE-CcCHHHHHHHHHHHHCCCEEEEEcCCCC-----HHHHHHHHcC-CEEEEeCCCC
Confidence 44 34443 6899999988888889999998877643 2233444455 6777666554
No 401
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=26.84 E-value=4.3e+02 Score=23.05 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=40.9
Q ss_pred HcCC-CeEEEecCcchHHHHHHHHHHH-cCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc---hhHHHHHHHHHH
Q 017391 172 RMGR-KSIVAATGAGQHGVATAAACAK-LALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC---FKEASSEAIRNW 246 (372)
Q Consensus 172 ~~g~-~~~V~~aSsGN~G~AvA~aa~~-~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~---~~da~~~a~~~~ 246 (372)
..|. ++.|+.++ +|..++.+|.+ .|++|-++.-.. ..+ ..-+-.+|||+..+.. .+.+.. ..+.|
T Consensus 52 ~~g~~~~GIliCG---tGiG~siaANK~~GIraa~~~d~~-----~A~-~ar~hNnaNVl~lGar~ig~~~a~~-iv~~f 121 (144)
T TIGR00689 52 VAGEVSLGILICG---TGIGMSIAANKFKGIRAALCVDEY-----TAA-LARQHNDANVLCLGSRVVGVELALS-IVDAF 121 (144)
T ss_pred HcCCCceEEEEcC---CcHHHHHHHhcCCCeEEEEECCHH-----HHH-HHHHhcCCcEEEECccccCHHHHHH-HHHHH
Confidence 3443 45555455 35778888888 999999885321 122 1223568999988873 344443 33556
Q ss_pred Hhc
Q 017391 247 VGN 249 (372)
Q Consensus 247 ~~~ 249 (372)
...
T Consensus 122 L~t 124 (144)
T TIGR00689 122 LTT 124 (144)
T ss_pred HcC
Confidence 543
No 402
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=26.81 E-value=80 Score=31.34 Aligned_cols=28 Identities=36% Similarity=0.398 Sum_probs=24.1
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEE
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
+++. ++|-.|.++|.+.++.|++++|+=
T Consensus 6 v~Iv-GgG~aGl~~A~~L~~~G~~v~l~E 33 (384)
T PRK08849 6 IAVV-GGGMVGAATALGFAKQGRSVAVIE 33 (384)
T ss_pred EEEE-CcCHHHHHHHHHHHhCCCcEEEEc
Confidence 3443 689999999999999999999986
No 403
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=26.67 E-value=84 Score=32.86 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=24.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+.+|+ ++|-+|.++|+.+++.|++|.++=.
T Consensus 8 DVvII--GGGi~G~~~A~~la~rGl~V~LvEk 37 (508)
T PRK12266 8 DLLVI--GGGINGAGIARDAAGRGLSVLLCEQ 37 (508)
T ss_pred CEEEE--CcCHHHHHHHHHHHHCCCeEEEEec
Confidence 44554 6899999999999999999887743
No 404
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=26.55 E-value=1.6e+02 Score=29.16 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=34.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
+.+++.+.+|..|.+++..++.+|.+++++.+ ..++...++.+|+..+
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~------s~~~~~~~~~~G~~~~ 242 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAGANPVAVVS------SEEKAEYCRALGAEGV 242 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEEeC------CHHHHHHHHHcCCCEE
Confidence 35555444589999999999999999766543 2356667788997543
No 405
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=26.51 E-value=92 Score=31.69 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.8
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
|||-.|.++|..+...|.+++++...
T Consensus 209 SSG~~g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 209 SSGKMGLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 56789999999999999999988744
No 406
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=26.49 E-value=3.8e+02 Score=25.21 Aligned_cols=64 Identities=23% Similarity=0.270 Sum_probs=39.5
Q ss_pred HHHcCCCeEEEecCcc-hHHHHHHHHHHHcC-CcE-EEEEcCCCccc--cHHHHHHHHHcCCEEEEEcC
Q 017391 170 AKRMGRKSIVAATGAG-QHGVATAAACAKLA-LDC-TVFMGTADMEK--QSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 170 a~~~g~~~~V~~aSsG-N~G~AvA~aa~~~G-i~~-~Iv~P~~~~~~--~~~k~~~l~~lGA~Vi~v~~ 233 (372)
.++.|.+.+|+.-|+| +.....+.+...+| -++ .|+||....+. .+.-....+.+|.+...++-
T Consensus 13 ~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i 81 (242)
T PF02540_consen 13 VKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDI 81 (242)
T ss_dssp HHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEES
T ss_pred HHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeeccch
Confidence 3456777777777666 67666666666676 444 47788543221 12233456788999877763
No 407
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=26.44 E-value=1.2e+02 Score=25.67 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=22.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
++++. ++|-.|++++++....|.+-+.++
T Consensus 14 ~vlvi-GaGg~ar~v~~~L~~~g~~~i~i~ 42 (135)
T PF01488_consen 14 RVLVI-GAGGAARAVAAALAALGAKEITIV 42 (135)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHTTSSEEEEE
T ss_pred EEEEE-CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 44443 689999999999999999844444
No 408
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=26.35 E-value=3.2e+02 Score=25.59 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=33.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
+.+++.+.+|..|.+++..|+..|.++++..+. .++...++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTGK------EEQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHhcCCcEE
Confidence 355555546999999999999999996555432 345567788997543
No 409
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=26.34 E-value=87 Score=29.74 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=24.1
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
++|=.|.++|+..++.|.+|+|+=+.
T Consensus 6 GaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 6 GAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp CTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 68999999999999999999999766
No 410
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=26.24 E-value=2.5e+02 Score=27.05 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=22.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCc-EEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALD-CTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~-~~Iv~P 207 (372)
.+++ .++|-.|.|+|++++..|.+ ++|+-.
T Consensus 128 ~vlI-~GAGGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 128 KLTV-IGAGGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred EEEE-ECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 4444 46788999999999999998 655543
No 411
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=26.22 E-value=85 Score=32.03 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=22.9
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
|||-.|.++|.+++..|-+++++...
T Consensus 212 SSG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 212 SSGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 37889999999999999999988754
No 412
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=26.14 E-value=4.9e+02 Score=23.46 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=40.3
Q ss_pred HcCC-CeEEEecCcchHHHHHHHHHHH-cCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC---chhHHHHHHHHHH
Q 017391 172 RMGR-KSIVAATGAGQHGVATAAACAK-LALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRNW 246 (372)
Q Consensus 172 ~~g~-~~~V~~aSsGN~G~AvA~aa~~-~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~---~~~da~~~a~~~~ 246 (372)
..|. +..|+.++ +|+.++.+|.+ .||+|-++.-.. ..+ ..-+-..|||+..+. ..+.+... ++.|
T Consensus 54 ~~g~~d~GIliCG---TGiG~siaANKv~GIRAA~~~d~~-----sA~-~aR~hNnaNVL~lG~r~ig~~~a~~i-v~~f 123 (171)
T PRK08622 54 ASGEADLGVCICG---TGVGISNAVNKVPGIRSALVRDMT-----SAL-YAKEELNANVIGFGGKITGELLMCDI-IDAF 123 (171)
T ss_pred HcCCCcEEEEEcC---CcHHHHHHHhcCCCeEEEEeCCHH-----HHH-HHHHhcCCcEEEEChhhcCHHHHHHH-HHHH
Confidence 3443 45555455 46788888888 899999885322 122 122356899998886 33444433 3556
Q ss_pred Hh
Q 017391 247 VG 248 (372)
Q Consensus 247 ~~ 248 (372)
..
T Consensus 124 L~ 125 (171)
T PRK08622 124 IN 125 (171)
T ss_pred Hc
Confidence 54
No 413
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=26.07 E-value=86 Score=33.15 Aligned_cols=30 Identities=30% Similarity=0.564 Sum_probs=24.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+.+|+ ++|-+|.++|+.+++.|++|+++=.
T Consensus 8 DVvII--GGGi~G~~iA~~La~rG~~V~LlEk 37 (546)
T PRK11101 8 DVIII--GGGATGAGIARDCALRGLRCILVER 37 (546)
T ss_pred cEEEE--CcCHHHHHHHHHHHHcCCeEEEEEC
Confidence 44444 6899999999999999999988753
No 414
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=26.01 E-value=1.8e+02 Score=29.81 Aligned_cols=53 Identities=30% Similarity=0.294 Sum_probs=35.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCc------cccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADM------EKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~------~~~~~k~~~l~~lGA~Vi 229 (372)
+++++. ++|..|.-+|...+.+|.+++++...... +-...-.+.++..|.+|+
T Consensus 173 ~~vvVI-GgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 231 (466)
T PRK07818 173 KSIVIA-GAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKIL 231 (466)
T ss_pred CeEEEE-CCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEE
Confidence 355554 68999999999999999999988643221 111222345667787764
No 415
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=25.98 E-value=2.3e+02 Score=28.27 Aligned_cols=58 Identities=24% Similarity=0.192 Sum_probs=34.3
Q ss_pred HcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC
Q 017391 172 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233 (372)
Q Consensus 172 ~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~ 233 (372)
..|.+.+++ +++|..|..++..+...+=.-.|++|...- ......+...|++++.++-
T Consensus 43 ~~g~~~~v~-~~sgt~aL~~~l~al~~~pGd~Viv~~~t~---~~~~~~~~~~G~~~v~vd~ 100 (376)
T TIGR02379 43 RTGTKKALL-TPSCTAALEMAALLLDIQPGDEVIMPSYTF---VSTANAFVLRGAKIVFVDI 100 (376)
T ss_pred HhCCCeEEE-eCCHHHHHHHHHHHcCCCCcCEEEECCCCc---HHHHHHHHHcCCEEEEEec
Confidence 346667665 456777766655443222223456666542 3344566788999988864
No 416
>PRK06125 short chain dehydrogenase; Provisional
Probab=25.95 E-value=3.5e+02 Score=24.66 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=24.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+.+++.+++|.-|.++|......|.+++++..
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r 39 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVAR 39 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 35555566788999999999999998777654
No 417
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=25.83 E-value=1e+02 Score=28.82 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=22.2
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++|-.|.+.|..+++.|++++++=.
T Consensus 7 G~G~aGl~aA~~l~~~g~~v~lie~ 31 (300)
T TIGR01292 7 GAGPAGLTAAIYAARANLKTLIIEG 31 (300)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEec
Confidence 6899999999999999999888763
No 418
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=25.68 E-value=3.2e+02 Score=26.39 Aligned_cols=65 Identities=18% Similarity=0.124 Sum_probs=38.0
Q ss_pred CCeeEEeecCCCcCcchhhHHHHHHHHHHH---HcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 142 GPEIYLKREDLNHVGAHKINNAIGQAMIAK---RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 142 ~~~IylK~E~~~pTGSfKdRga~~~~~~a~---~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
-.|.-+.+++-.-.|-+=|-..+...+... ..+ +++++. ++|-.|+|++++.+..|++-+.++..
T Consensus 92 AVNTv~~~~~g~l~G~NTD~~Gf~~~L~~~~~~~~~-k~vlil-GaGGaarAi~~aL~~~g~~~i~i~nR 159 (283)
T PRK14027 92 AVNTVVIDATGHTTGHNTDVSGFGRGMEEGLPNAKL-DSVVQV-GAGGVGNAVAYALVTHGVQKLQVADL 159 (283)
T ss_pred CceEEEECCCCcEEEEcCCHHHHHHHHHhcCcCcCC-CeEEEE-CCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 456554433333456666644333332211 112 244443 68999999999999999987666644
No 419
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.67 E-value=4.4e+02 Score=24.33 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=18.6
Q ss_pred cchHHHHHHHHHHHcCCcEEEEE
Q 017391 184 AGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 184 sGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
++--|.|+|..++..|.++++..
T Consensus 17 ~~GIG~a~a~~l~~~G~~v~~~~ 39 (260)
T PRK06997 17 NRSIAYGIAKACKREGAELAFTY 39 (260)
T ss_pred CCcHHHHHHHHHHHCCCeEEEEc
Confidence 34678888888999999988764
No 420
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=25.63 E-value=2.3e+02 Score=27.34 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=33.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
++++. ++|..|.+++..|+.+|.+.++.+-. ..+++..++.+|++-+
T Consensus 163 ~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~-----~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 163 NVIII-GAGTIGLLAIQCAVALGAKSVTAIDI-----NSEKLALAKSLGAMQT 209 (347)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC-----CHHHHHHHHHcCCceE
Confidence 44444 57999999999999999986555422 2456667788998643
No 421
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=25.58 E-value=92 Score=28.87 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.6
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
++|=.|.++|...++.|++++|+=..
T Consensus 7 GaG~aGl~~A~~l~~~g~~v~vie~~ 32 (295)
T TIGR02032 7 GAGPAGASAAYRLADKGLRVLLLEKK 32 (295)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 68999999999999999998887543
No 422
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=25.46 E-value=2.6e+02 Score=27.19 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=32.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
+++++. ++|-.|.+++..|+.+|.+.++.+-. ...+...++.+|++-
T Consensus 178 ~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~-----~~~~~~~~~~~Ga~~ 224 (358)
T TIGR03451 178 DSVAVI-GCGGVGDAAIAGAALAGASKIIAVDI-----DDRKLEWAREFGATH 224 (358)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC-----CHHHHHHHHHcCCce
Confidence 344444 57889999988999999974444422 245667788899854
No 423
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=25.45 E-value=2.3e+02 Score=30.05 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=27.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTAD 210 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~ 210 (372)
+++++. ++|+.|.-+|...+++|.+++++.....
T Consensus 144 ~~VvVI-GgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVI-GGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEE-CCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 345553 6899999999999999999999987653
No 424
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=25.44 E-value=3.1e+02 Score=30.45 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=34.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccc-------cHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEK-------QSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~-------~~~k~~~l~~lGA~Vi 229 (372)
++|+. ++|..|.-+|.+.+..|++++|+......-. ...-.+.++..|.+|+
T Consensus 142 ~vvVV-GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~ 200 (785)
T TIGR02374 142 KAAVI-GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFL 200 (785)
T ss_pred eEEEE-CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEE
Confidence 44444 6899999999999999999999875433210 0112345677887764
No 425
>PRK08227 autoinducer 2 aldolase; Validated
Probab=25.41 E-value=6.1e+02 Score=24.37 Aligned_cols=91 Identities=11% Similarity=0.040 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCeEEEecCcch--------HHHHHHHHHHHcCCcEEEEEcCCCc-cccHH----HHHHHHHcCCEEEE
Q 017391 164 IGQAMIAKRMGRKSIVAATGAGQ--------HGVATAAACAKLALDCTVFMGTADM-EKQSS----KVLLMKLLGAQVKA 230 (372)
Q Consensus 164 ~~~~~~a~~~g~~~~V~~aSsGN--------~G~AvA~aa~~~Gi~~~Iv~P~~~~-~~~~~----k~~~l~~lGA~Vi~ 230 (372)
...+..|.+.|.+.+.+.---|+ .-..++..|.++|+++++++|.+.. .+... -.+.--.+||+|+-
T Consensus 97 ~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK 176 (264)
T PRK08227 97 AVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIK 176 (264)
T ss_pred eecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEe
Confidence 33355677888875433111122 2344556789999999999997642 11111 12344578999988
Q ss_pred EcCchhHHHHHHHHHHHhccCCcEEEecc
Q 017391 231 VDGCFKEASSEAIRNWVGNLEKSYYLTGT 259 (372)
Q Consensus 231 v~~~~~da~~~a~~~~~~~~~~~~y~~~s 259 (372)
+.-+- +.+.++.+ ..+-...+.++
T Consensus 177 ~~y~~-~~f~~vv~----a~~vPVviaGG 200 (264)
T PRK08227 177 TYYVE-EGFERITA----GCPVPIVIAGG 200 (264)
T ss_pred cCCCH-HHHHHHHH----cCCCcEEEeCC
Confidence 87642 44444432 23344555444
No 426
>PRK08267 short chain dehydrogenase; Provisional
Probab=25.40 E-value=3.3e+02 Score=24.81 Aligned_cols=31 Identities=26% Similarity=0.100 Sum_probs=24.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++++.+++|.-|.++|......|.+++++..
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r 33 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDI 33 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 4555566788999999999999998888754
No 427
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=25.40 E-value=94 Score=31.79 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=23.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
+.+|+ ++|-.|.+.|+.++..|.+++|+=
T Consensus 6 DVvVV--G~G~aGl~AA~~aa~~G~~V~vlE 34 (466)
T PRK08274 6 DVLVI--GGGNAALCAALAAREAGASVLLLE 34 (466)
T ss_pred CEEEE--CCCHHHHHHHHHHHHCCCeEEEEe
Confidence 44444 689999999999999999988874
No 428
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=25.35 E-value=2.6e+02 Score=26.71 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=33.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
+.+++.+.+|..|.+++..|+.+|.+++++... . +...++.+|++.+.
T Consensus 179 ~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~------~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 179 ETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA------A-KEEAVRALGADTVI 226 (350)
T ss_pred CEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc------h-hhHHHHhcCCeEEE
Confidence 355554445999999999999999996655421 2 44566778987543
No 429
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=25.35 E-value=2.4e+02 Score=28.08 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=36.6
Q ss_pred eEEEecCcc--hHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHH----HHHcCCEEEEEc
Q 017391 177 SIVAATGAG--QHGVATAAACAKLALDCTVFMGTADMEKQSSKVLL----MKLLGAQVKAVD 232 (372)
Q Consensus 177 ~~V~~aSsG--N~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~----l~~lGA~Vi~v~ 232 (372)
++... +.+ |.+.+++.+++++|++++++.|++-.. .+.-+.. .+..|.+|...+
T Consensus 157 ~va~v-Gd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 157 KLAYV-GDGRNNMANSLMVGGAKLGMDVRICAPKELWP-EEELVALAREIAKETGAKITITE 216 (331)
T ss_pred EEEEE-CCCcccHHHHHHHHHHHcCCEEEEECCccccc-CHHHHHHHHHHHHHcCCeEEEEc
Confidence 44443 454 799999999999999999999987532 2222222 244788876554
No 430
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=25.23 E-value=1.7e+02 Score=29.14 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=34.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
+.+++.+.+|..|.+++..|+.+|.+++++.+. ..+...++.+|+..+.
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~------~~~~~~~~~~g~~~~v 239 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAGGGNPVAVVSS------PEKAEYCRELGAEAVI 239 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCC------HHHHHHHHHcCCCEEe
Confidence 355554445999999999999999997655322 3455677789986543
No 431
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=25.16 E-value=3.3e+02 Score=28.39 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=31.1
Q ss_pred eEEEecCcchHH---HHHHHHHHHcCCcEEEEEcCCCcc-ccHHHHHHHHHcCCEE
Q 017391 177 SIVAATGAGQHG---VATAAACAKLALDCTVFMGTADME-KQSSKVLLMKLLGAQV 228 (372)
Q Consensus 177 ~~V~~aSsGN~G---~AvA~aa~~~Gi~~~Iv~P~~~~~-~~~~k~~~l~~lGA~V 228 (372)
++++.++.||.| .++|...+..|++|.|+++....+ ..+....+++.+|..+
T Consensus 61 ~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 61 RVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 455556788743 344555666899999999754321 1123445666677554
No 432
>PLN02827 Alcohol dehydrogenase-like
Probab=25.13 E-value=4.9e+02 Score=25.73 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=32.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
.+++. ++|--|.+++..|+.+|.+.++.+.. ..+|...++.+|++-+
T Consensus 196 ~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~-----~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 196 SVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI-----NPEKAEKAKTFGVTDF 242 (378)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC-----CHHHHHHHHHcCCcEE
Confidence 44443 57889999888999999875555432 2356677888999643
No 433
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=25.10 E-value=3e+02 Score=26.51 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=32.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
++++. ++|..|.+++..|+.+|++.+++... ..++...++.+|++.+.
T Consensus 175 ~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~~-----~~~~~~~~~~~ga~~~i 222 (351)
T cd08233 175 TALVL-GAGPIGLLTILALKAAGASKIIVSEP-----SEARRELAEELGATIVL 222 (351)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC-----CHHHHHHHHHhCCCEEE
Confidence 44444 46889999999999999954444422 24566677788987544
No 434
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=25.01 E-value=3.1e+02 Score=26.18 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=31.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
+.+++. ++|..|.+++..|+.+|+..++++.. ...+...++.+|+.+
T Consensus 169 ~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~~~-----~~~~~~~~~~~g~~~ 215 (344)
T cd08284 169 DTVAVI-GCGPVGLCAVLSAQVLGAARVFAVDP-----VPERLERAAALGAEP 215 (344)
T ss_pred CEEEEE-CCcHHHHHHHHHHHHcCCceEEEEcC-----CHHHHHHHHHhCCeE
Confidence 344544 57899999999999999843444422 235566777899864
No 435
>PRK07856 short chain dehydrogenase; Provisional
Probab=24.99 E-value=3.9e+02 Score=24.29 Aligned_cols=31 Identities=16% Similarity=0.122 Sum_probs=24.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++|--|.++|...+..|.+++++..
T Consensus 8 ~~lItGas~gIG~~la~~l~~~g~~v~~~~r 38 (252)
T PRK07856 8 VVLVTGGTRGIGAGIARAFLAAGATVVVCGR 38 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 4555566788999999999899998877754
No 436
>PRK06484 short chain dehydrogenase; Validated
Probab=24.94 E-value=4e+02 Score=27.38 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=37.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEE--cCchhHHHHHHHHHHH
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV--DGCFKEASSEAIRNWV 247 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v--~~~~~da~~~a~~~~~ 247 (372)
.+++.++++.-|.++|......|.+++++-... ..-....+.+|.++..+ +-+-.+....+.+...
T Consensus 7 ~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (520)
T PRK06484 7 VVLVTGAAGGIGRAACQRFARAGDQVVVADRNV-----ERARERADSLGPDHHALAMDVSDEAQIREGFEQLH 74 (520)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHH
Confidence 445545567799999999999999887764321 11112344567776444 3322333434444433
No 437
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=24.85 E-value=2e+02 Score=28.54 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHH----HHHcCCEEEEEc
Q 017391 185 GQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLL----MKLLGAQVKAVD 232 (372)
Q Consensus 185 GN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~----l~~lGA~Vi~v~ 232 (372)
.|.+.+++.+++++|++++++.|++-.. ...-+.. .+..|++|....
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKELNP-DDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCccccC-CHHHHHHHHHHHHHcCCeEEEEc
Confidence 4789999999999999999999986422 1222222 345788886554
No 438
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=24.78 E-value=6.6e+02 Score=27.49 Aligned_cols=122 Identities=17% Similarity=0.146 Sum_probs=64.5
Q ss_pred EEEecCcchHHHHHHH----HHHHcCC-cEEEEEcCCCccc--------cHHHHHHHHHcCCEEE-EEcCchhHHHHHHH
Q 017391 178 IVAATGAGQHGVATAA----ACAKLAL-DCTVFMGTADMEK--------QSSKVLLMKLLGAQVK-AVDGCFKEASSEAI 243 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~----aa~~~Gi-~~~Iv~P~~~~~~--------~~~k~~~l~~lGA~Vi-~v~~~~~da~~~a~ 243 (372)
+.+..+-|..--.+++ .|..+++ +.++++..+.++. ......+.+++|=+|+ .++|.--+.+..|+
T Consensus 151 tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai 230 (663)
T COG0021 151 TYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAI 230 (663)
T ss_pred EEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCcccccchhHHHHHHhcCCeEEEecCCCCHHHHHHHH
Confidence 3333567765443333 3444666 6788887644331 2334458899999998 66665344466666
Q ss_pred HHHHhccCCcEEEec----cccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcC
Q 017391 244 RNWVGNLEKSYYLTG----TVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACV 300 (372)
Q Consensus 244 ~~~~~~~~~~~y~~~----s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpv 300 (372)
+.......+..++.- +..+++--..- ..+-..++.|-+++.++.+|-.++.|.||-
T Consensus 231 ~~Ak~~~dkPtlI~~kTiIG~Gsp~kegt~-~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ 290 (663)
T COG0021 231 EEAKASTDKPTLIIVKTIIGKGSPNKEGTH-KVHGAPLGEEEVAAAKKALGWEPEPFEVPE 290 (663)
T ss_pred HHHHhcCCCCeEEEEEeeeecCCCCcCCCc-cccCCCCCHHHHHHHHHHhCCCCCceecCH
Confidence 555443334444430 11112200000 012234556666777777775556688874
No 439
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=24.74 E-value=5.2e+02 Score=23.27 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=22.4
Q ss_pred HHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 195 CAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 195 a~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
+...|++.+|+.|..... ....++.++..|--|+.++..
T Consensus 51 ~i~~~~d~Iiv~~~~~~~-~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 51 AISQGVDGIIVSPVDPDS-LAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHTTESEEEEESSSTTT-THHHHHHHHHTTSEEEEESST
T ss_pred HHHhcCCEEEecCCCHHH-HHHHHHHHhhcCceEEEEecc
Confidence 444667777766654321 334555666667767666553
No 440
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=24.68 E-value=1e+02 Score=29.97 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcCCCCcEEEEEecCCCCCCCccccccccCCCceeecCcceeeeeC
Q 017391 279 KETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQD 358 (372)
Q Consensus 279 ~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~~~~vrvigVe~~gs~~~~~~~a~~l~~G~~gv~~g~~~~~l~d 358 (372)
.++.+.+.+..|. +.++++|+|+.+|..++....+ +.-.|+.-++. |.-.-..|....+.|.+-..+-+
T Consensus 32 ~~l~~~i~~l~g~-e~a~f~~sGT~An~~al~~~~~--~~~~vi~~~~a--------Hi~~~E~ga~~~~~G~~~~~l~~ 100 (290)
T PF01212_consen 32 ARLEERIAELFGK-EAALFVPSGTMANQLALRAHLR--PGESVICADTA--------HIHFDETGAIEELSGAKLIPLPS 100 (290)
T ss_dssp HHHHHHHHHHHTS-SEEEEESSHHHHHHHHHHHHHH--TTEEEEEETTE--------HHHHSSTTHHHHHTTCEEEEEBE
T ss_pred HHHHHHHHHHcCC-CEEEEeCCCChHHHHHHHHHHh--cCCceeccccc--------eeeeeccchhhHhcCcEEEECCC
Confidence 4555555555665 5889999999999999976653 44455554442 22222233333445555555555
Q ss_pred CC-Ccc
Q 017391 359 EE-GQI 363 (372)
Q Consensus 359 ~~-~~~ 363 (372)
++ |.+
T Consensus 101 ~~~G~l 106 (290)
T PF01212_consen 101 DDDGKL 106 (290)
T ss_dssp CTGTBB
T ss_pred cccCCC
Confidence 55 554
No 441
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=24.64 E-value=1.9e+02 Score=28.21 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcccc-HHHHHHHHHcCCEEEEEc
Q 017391 190 ATAAACAKLALDCTVFMGTADMEKQ-SSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 190 AvA~aa~~~Gi~~~Iv~P~~~~~~~-~~k~~~l~~lGA~Vi~v~ 232 (372)
++-..++..|.+..|++.++.+..+ ..-...+...|-++..+.
T Consensus 130 ~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~ 173 (301)
T TIGR00511 130 SVIKTAFEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIV 173 (301)
T ss_pred HHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEe
Confidence 3334455677777777777665321 122445666677775554
No 442
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=24.62 E-value=1.2e+02 Score=32.86 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=24.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+.+|+ ++|-+|.++|+.+++.|++|+++=.
T Consensus 73 DVvVI--GGGi~Ga~~A~~lA~rGl~V~LvE~ 102 (627)
T PLN02464 73 DVLVV--GGGATGAGVALDAATRGLRVGLVER 102 (627)
T ss_pred CEEEE--CCCHHHHHHHHHHHhCCCEEEEEec
Confidence 45554 6899999999999999999877743
No 443
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=24.61 E-value=6.4e+02 Score=24.31 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=27.1
Q ss_pred CCeEEEecCcchHHHHHHHHHHHc--------CCcEEEEEcCCC
Q 017391 175 RKSIVAATGAGQHGVATAAACAKL--------ALDCTVFMGTAD 210 (372)
Q Consensus 175 ~~~~V~~aSsGN~G~AvA~aa~~~--------Gi~~~Iv~P~~~ 210 (372)
.+.+|+..++|-+..+++.+++.+ ..+++.+-|.+.
T Consensus 172 ~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~ 215 (324)
T cd01563 172 PDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGA 215 (324)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCC
Confidence 478888777888888888776653 578888888764
No 444
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=24.52 E-value=2.2e+02 Score=32.72 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=34.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCc-EEEEEcCCCcc--ccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALD-CTVFMGTADME--KQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~-~~Iv~P~~~~~--~~~~k~~~l~~lGA~Vi 229 (372)
++|+. ++||+|.-+|..+.++|.+ ++++++..... .....++.++..|.+++
T Consensus 573 ~VvVI-GgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~ 627 (1006)
T PRK12775 573 SVVVI-GAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFF 627 (1006)
T ss_pred EEEEE-CCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEE
Confidence 44443 6899999999999999986 66777643221 12233456667787764
No 445
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=24.38 E-value=2.8e+02 Score=27.17 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=38.3
Q ss_pred cCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHc
Q 017391 173 MGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLL 224 (372)
Q Consensus 173 ~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~l 224 (372)
.++ .+++. ++||++.--|......+-+++++...+..+.....+++++..
T Consensus 142 ~~k-~v~Vi-GgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~ 191 (305)
T COG0492 142 KGK-DVVVI-GGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKN 191 (305)
T ss_pred cCC-eEEEE-cCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhc
Confidence 355 44443 689999999999999999999999887665555666677765
No 446
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=24.35 E-value=2.7e+02 Score=30.16 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=35.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCC-cEEEEEcCCCc--cccHHHHHHHHHcCCEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLAL-DCTVFMGTADM--EKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi-~~~Iv~P~~~~--~~~~~k~~~l~~lGA~Vi~ 230 (372)
.+|+. ++||+|.-+|..+.++|- ++++++..... +.....+..++..|.+++.
T Consensus 470 ~VvVI-GgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~ 525 (654)
T PRK12769 470 NVVVL-GGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEF 525 (654)
T ss_pred eEEEE-CCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEe
Confidence 44444 689999999998999997 58887754321 1223345566777877643
No 447
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=24.32 E-value=1.8e+02 Score=28.25 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=33.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
++++. ++|-.|.+++..++.+|.+++++.. ..+++..++.+|++.+.
T Consensus 169 ~VlV~-G~G~vG~~a~~~a~~~G~~vi~~~~------~~~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 169 LVIVI-GAGGVGGYMVQTAKAMGAAVVAIDI------DPEKLEMMKGFGADLTL 215 (349)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCeEEEEcC------CHHHHHHHHHhCCceEe
Confidence 44443 4599999999999999997544321 24567788889987543
No 448
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=24.15 E-value=3.2e+02 Score=23.92 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=28.9
Q ss_pred HHcCCCeEEEecCcchHHH-HHHHHHHHcCCcEEEEEcC
Q 017391 171 KRMGRKSIVAATGAGQHGV-ATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 171 ~~~g~~~~V~~aSsGN~G~-AvA~aa~~~Gi~~~Iv~P~ 208 (372)
++.|.+++|+++-..|.+. ++|..|..+|++++++--.
T Consensus 110 ~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da 148 (179)
T cd01015 110 TARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVREC 148 (179)
T ss_pred HHcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeecc
Confidence 4678889888777788887 4555577899999887643
No 449
>PRK12829 short chain dehydrogenase; Provisional
Probab=24.15 E-value=5.2e+02 Score=23.35 Aligned_cols=32 Identities=25% Similarity=0.171 Sum_probs=25.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+++++.+++|.-|.++|......|.+++++..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 35555566799999999998889999777653
No 450
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=24.14 E-value=3.1e+02 Score=26.27 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=32.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCc-EEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALD-CTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~-~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
++++. ++|--|.+++..++.+|.+ ++++- . .+++...++.+|++.+.
T Consensus 166 ~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~-~-----~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 166 TVLVV-GAGPVGLGALMLARALGAEDVIGVD-P-----SPERLELAKALGADFVI 213 (339)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC-C-----CHHHHHHHHHhCCCEEE
Confidence 44443 5688999999999999999 54432 1 24566677889986543
No 451
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=24.13 E-value=2e+02 Score=28.71 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=26.3
Q ss_pred CCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 174 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 174 g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
|++..|+ +-|+.|.++|...+..|++++++.+.
T Consensus 16 gKtVGII--G~GsIG~amA~nL~d~G~~ViV~~r~ 48 (335)
T PRK13403 16 GKTVAVI--GYGSQGHAQAQNLRDSGVEVVVGVRP 48 (335)
T ss_pred cCEEEEE--eEcHHHHHHHHHHHHCcCEEEEEECc
Confidence 4443343 57999999999999999999998654
No 452
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=24.04 E-value=4.7e+02 Score=24.03 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=24.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+.+|.-|.++|......|.++++...
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~~V~~~~~ 33 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGYRVVLHYH 33 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCCeEEEEcC
Confidence 3455566688999999999999999887653
No 453
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=24.03 E-value=2.5e+02 Score=27.99 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHH----HHHHcCCEEEEEcC
Q 017391 186 QHGVATAAACAKLALDCTVFMGTADMEKQSSKVL----LMKLLGAQVKAVDG 233 (372)
Q Consensus 186 N~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~----~l~~lGA~Vi~v~~ 233 (372)
|.+.+++.+++++|++++++.|++-.. ...-+. ..+..|++|...+.
T Consensus 168 ~v~~S~~~~~~~~G~~v~~~~P~~~~~-~~~~~~~~~~~~~~~g~~~~~~~d 218 (334)
T PRK12562 168 NMGNSMLEAAALTGLDLRLVAPQACWP-EASLVAECSALAQKHGGKITLTED 218 (334)
T ss_pred CHHHHHHHHHHHcCCEEEEECCcccCC-cHHHHHHHHHHHHHcCCeEEEEcC
Confidence 789999999999999999999987422 122222 23456888765443
No 454
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=24.00 E-value=3.1e+02 Score=28.15 Aligned_cols=52 Identities=29% Similarity=0.391 Sum_probs=35.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccc------cHHHHHHHHHcCCEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEK------QSSKVLLMKLLGAQV 228 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~------~~~k~~~l~~lGA~V 228 (372)
+++++. ++|..|..+|...+++|.+++++.+....-. ...-.+.++..|.+|
T Consensus 181 ~~vvII-GgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i 238 (472)
T PRK05976 181 KSLVIV-GGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRV 238 (472)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEE
Confidence 455554 6899999999999999999999975432210 111224567778766
No 455
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.92 E-value=1e+02 Score=32.09 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=24.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+.+|+ ++|-+|.++|+-+++.|+++.++=.
T Consensus 8 DVvII--GGGi~G~~~A~~la~rG~~V~LlEk 37 (502)
T PRK13369 8 DLFVI--GGGINGAGIARDAAGRGLKVLLCEK 37 (502)
T ss_pred CEEEE--CCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 44444 6899999999999999999888753
No 456
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=23.88 E-value=4.1e+02 Score=25.25 Aligned_cols=66 Identities=15% Similarity=0.071 Sum_probs=38.7
Q ss_pred HHHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHH-HHcCCEEEEEcCc
Q 017391 168 MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLM-KLLGAQVKAVDGC 234 (372)
Q Consensus 168 ~~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l-~~lGA~Vi~v~~~ 234 (372)
..+.+.|+..+++.+=-||.=.+..+. +..|.++.++++....+.....+... ...|.+++..++.
T Consensus 114 ~~a~~~g~gvIl~t~H~GnwE~~~~~l-~~~~~~~~~i~~~~~n~~~~~~~~~~R~~~g~~~i~~~~~ 180 (295)
T PF03279_consen 114 EAALAEGRGVILLTGHFGNWELAGRAL-ARRGPPVAVIYRPQKNPYIDRLLNKLRERFGIELIPKGEG 180 (295)
T ss_pred HHHHhcCCCCEEeCcCcChHHHHHHHH-HhhCCceEEEecCCccHhHHHHHHHHHHhcCCeEecchhh
Confidence 345567777776644449988655444 44566888888765322223333334 3567777765543
No 457
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=23.87 E-value=2.1e+02 Score=26.61 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=33.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
+.+++...+|..|.+++..|+..|.+++.+... .++...++.+|++-+
T Consensus 144 ~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~~ 191 (320)
T cd08243 144 DTLLIRGGTSSVGLAALKLAKALGATVTATTRS------PERAALLKELGADEV 191 (320)
T ss_pred CEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHhcCCcEE
Confidence 355554446999999999999999996655433 234556677887543
No 458
>PRK09072 short chain dehydrogenase; Provisional
Probab=23.81 E-value=2.4e+02 Score=25.88 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=24.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
.+++.+++|-.|.++|......|.+++++..
T Consensus 7 ~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r 37 (263)
T PRK09072 7 RVLLTGASGGIGQALAEALAAAGARLLLVGR 37 (263)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 4555566788999999999999999877754
No 459
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=23.79 E-value=2.9e+02 Score=26.39 Aligned_cols=46 Identities=22% Similarity=0.401 Sum_probs=32.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 227 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~ 227 (372)
+.+++. ++|..|.+++..|+..|++.++.+... ..+...++.+|++
T Consensus 170 ~~vlI~-g~g~vg~~~~~lak~~G~~~v~~~~~~-----~~~~~~~~~~ga~ 215 (345)
T cd08287 170 STVVVV-GDGAVGLCAVLAAKRLGAERIIAMSRH-----EDRQALAREFGAT 215 (345)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHcCCc
Confidence 355554 589999999999999999866665432 2455677788874
No 460
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=23.77 E-value=2.2e+02 Score=25.62 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=28.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
.+++.+.++ .|.+++..++..|.+++++.+. ..+...++.+|+..
T Consensus 137 ~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~ 181 (271)
T cd05188 137 TVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS------DEKLELAKELGADH 181 (271)
T ss_pred EEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC------HHHHHHHHHhCCce
Confidence 444444345 9999999999999877666433 23444566666543
No 461
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.66 E-value=2e+02 Score=27.78 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=30.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
++++ -+.|..|.++|..++.+|.+++++-+. ..+..+...+|.+.
T Consensus 153 ~v~I-iG~G~iG~avA~~L~~~G~~V~v~~R~------~~~~~~~~~~g~~~ 197 (287)
T TIGR02853 153 NVMV-LGFGRTGMTIARTFSALGARVFVGARS------SADLARITEMGLIP 197 (287)
T ss_pred EEEE-EcChHHHHHHHHHHHHCCCEEEEEeCC------HHHHHHHHHCCCee
Confidence 3443 368999999999999999987766432 22333445566553
No 462
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=23.60 E-value=2.4e+02 Score=28.03 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=31.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
+.+++ .++|--|.+++..|+.+|.+++++.+.. ..+...++.+|++.+
T Consensus 180 ~~VlV-~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~-----~~~~~~a~~lGa~~~ 227 (375)
T PLN02178 180 KRLGV-NGLGGLGHIAVKIGKAFGLRVTVISRSS-----EKEREAIDRLGADSF 227 (375)
T ss_pred CEEEE-EcccHHHHHHHHHHHHcCCeEEEEeCCh-----HHhHHHHHhCCCcEE
Confidence 34554 4579999999999999999866554321 123445677888643
No 463
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=23.51 E-value=1.2e+02 Score=28.76 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=24.8
Q ss_pred CCeEEEecCcchHHHHHHHHHHHcCCcEEEEE
Q 017391 175 RKSIVAATGAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 175 ~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
.+.+|+ ++|-.|.+.|+.+++.|++++|+=
T Consensus 22 ~DVvIV--GgGpAGL~aA~~la~~G~~V~vlE 51 (254)
T TIGR00292 22 SDVIIV--GAGPSGLTAAYYLAKNGLKVCVLE 51 (254)
T ss_pred CCEEEE--CCCHHHHHHHHHHHHCCCcEEEEe
Confidence 355554 689999999999999999998883
No 464
>PRK05868 hypothetical protein; Validated
Probab=23.39 E-value=1e+02 Score=30.62 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.8
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEE
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
+++ .++|-.|.++|.+.++.|++++|+=
T Consensus 4 V~I-vGgG~aGl~~A~~L~~~G~~v~viE 31 (372)
T PRK05868 4 VVV-SGASVAGTAAAYWLGRHGYSVTMVE 31 (372)
T ss_pred EEE-ECCCHHHHHHHHHHHhCCCCEEEEc
Confidence 444 3789999999999999999999884
No 465
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=23.34 E-value=2.9e+02 Score=23.38 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC-chhHHHH
Q 017391 188 GVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG-CFKEASS 240 (372)
Q Consensus 188 G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~-~~~da~~ 240 (372)
|..+|......|++++|.---+ +.-...++..|-+|+..++ +.+|++.
T Consensus 54 G~~~a~~l~~~gvdvvi~~~iG-----~~a~~~l~~~GIkv~~~~~~~V~e~i~ 102 (121)
T COG1433 54 GIRIAELLVDEGVDVVIASNIG-----PNAYNALKAAGIKVYVAPGGTVEEAIK 102 (121)
T ss_pred hHHHHHHHHHcCCCEEEECccC-----HHHHHHHHHcCcEEEecCCCCHHHHHH
Confidence 3344444555555555542211 1234467777777766655 4555443
No 466
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=23.27 E-value=2.1e+02 Score=27.50 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=33.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCC-cEEEEEcCCCccccHHHHHHHHH-cCCEEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLAL-DCTVFMGTADMEKQSSKVLLMKL-LGAQVKAV 231 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi-~~~Iv~P~~~~~~~~~k~~~l~~-lGA~Vi~v 231 (372)
+++++.+.+|-.|.++...|+.+|. ++++... ..++...++. +|++-+..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~------s~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG------SDEKCQLLKSELGFDAAIN 207 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC------CHHHHHHHHHhcCCcEEEE
Confidence 4555544458899998888999998 5655532 2345566665 89865443
No 467
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.20 E-value=7.3e+02 Score=24.46 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=38.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE--EEEcC-chhHHHHHH
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV--KAVDG-CFKEASSEA 242 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V--i~v~~-~~~da~~~a 242 (372)
.++++++++--|+++|.-+++.|-+.++.==.. ..-.+.+++++..| ++ ..++- +.+|..+.+
T Consensus 40 ~vLITGgg~GlGr~ialefa~rg~~~vl~Din~--~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a 105 (300)
T KOG1201|consen 40 IVLITGGGSGLGRLIALEFAKRGAKLVLWDINK--QGNEETVKEIRKIG-EAKAYTCDISDREEIYRLA 105 (300)
T ss_pred EEEEeCCCchHHHHHHHHHHHhCCeEEEEeccc--cchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHH
Confidence 344434444699999999999998655442221 11345666777777 55 55554 455655444
No 468
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=23.11 E-value=5e+02 Score=22.57 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=39.3
Q ss_pred CeEEEecCcchHHHHHHHHHHH-cCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc---hhHHHHHHHHHHHhc
Q 017391 176 KSIVAATGAGQHGVATAAACAK-LALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC---FKEASSEAIRNWVGN 249 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~-~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~---~~da~~~a~~~~~~~ 249 (372)
+..|+.++ +|..++.+|.+ .|++|.++.-.. ..+ ..-+-..|||+..+.. .+.+.+. .+.|.+.
T Consensus 58 ~~GIliCG---tGiG~siaANK~~GIraa~~~d~~-----~A~-~ar~hNnaNvl~lG~r~~g~~~a~~i-v~~fl~t 125 (143)
T TIGR01120 58 DGGILICG---TGIGMSIAANKFAGIRAALCSEPY-----MAQ-MSRLHNDANVLCLGERVVGLELAKSI-VDAWLGT 125 (143)
T ss_pred ceEEEEcC---CcHHHHHHHhcCCCeEEEEECCHH-----HHH-HHHHhcCCcEEEECcceeCHHHHHHH-HHHHHcC
Confidence 45555455 46778888888 999999985322 122 1233568999888873 3444433 3556543
No 469
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=23.09 E-value=2.9e+02 Score=28.52 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=35.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCc--------c-------ccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADM--------E-------KQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~--------~-------~~~~k~~~l~~lGA~Vi 229 (372)
.+++. ++|-.|.+.|..+++.|.+++|+-..... + -......+++.+|.+++
T Consensus 143 ~V~II-G~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~ 209 (467)
T TIGR01318 143 RVAVI-GAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFH 209 (467)
T ss_pred eEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEE
Confidence 44443 68999999999999999998887432110 0 00124567888998874
No 470
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=23.06 E-value=3.9e+02 Score=23.28 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=39.3
Q ss_pred CeEEEecCcchHHHHHHHHHHH-cCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcC---chhHHHHHHHHHHHhc
Q 017391 176 KSIVAATGAGQHGVATAAACAK-LALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRNWVGN 249 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~-~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~---~~~da~~~a~~~~~~~ 249 (372)
++.|+.+++ |..++.+|.+ .|++|-++.... ..+. .-+-..|||+..++ +.+.+.+.+ +.|...
T Consensus 56 ~~GIliCGt---GiG~siaANKv~GIRaA~~~d~~-----~A~~-ar~hNnaNVl~lG~r~ig~~~a~~iv-~~fL~t 123 (141)
T PRK12613 56 RLGIMVDAY---GAGPFMVATKLKGMVAAEVSDER-----SAYM-TRGHNNARMITMGAEIVGPELAKNIA-KGFVTG 123 (141)
T ss_pred ceEEEEcCC---CHhHhhhhhcCCCeEEEEECCHH-----HHHH-HHHHcCCcEEEECccccCHHHHHHHH-HHHHcC
Confidence 344444553 5777888888 999999885332 1221 22356899999887 344554433 556543
No 471
>PRK07538 hypothetical protein; Provisional
Probab=23.00 E-value=1e+02 Score=30.93 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=22.1
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEE
Q 017391 183 GAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
++|=.|.++|.+.++.|++++||=
T Consensus 7 GaG~aGl~~A~~L~~~G~~v~v~E 30 (413)
T PRK07538 7 GGGIGGLTLALTLHQRGIEVVVFE 30 (413)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEE
Confidence 689999999999999999998884
No 472
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=22.92 E-value=4.8e+02 Score=22.27 Aligned_cols=110 Identities=11% Similarity=0.054 Sum_probs=60.4
Q ss_pred EecCcchHHHHHHHHHHHcC--CcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCchhHHHHHHHHHHHhccCCcEEEe
Q 017391 180 AATGAGQHGVATAAACAKLA--LDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLT 257 (372)
Q Consensus 180 ~~aSsGN~G~AvA~aa~~~G--i~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~~~da~~~a~~~~~~~~~~~~y~~ 257 (372)
+-+|+|.=|..+--.+++.. ++++-+.-... ...-.+|.+.+..+.+.+... ++....++.+.....+..+.
T Consensus 3 ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n---~~~L~~q~~~f~p~~v~i~~~--~~~~~l~~~~~~~~~~~~v~- 76 (129)
T PF02670_consen 3 ILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSN---IEKLAEQAREFKPKYVVIADE--EAYEELKKALPSKGPGIEVL- 76 (129)
T ss_dssp EESTTSHHHHHHHHHHHHCTTTEEEEEEEESST---HHHHHHHHHHHT-SEEEESSH--HHHHHHHHHHHHTTSSSEEE-
T ss_pred EEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCC---HHHHHHHHHHhCCCEEEEcCH--HHHHHHHHHhhhcCCCCEEE-
Confidence 34678999999999999976 77777765544 344566888898888777652 22222322222111122211
Q ss_pred ccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEcCCchhHHHhhhhhhcCC
Q 017391 258 GTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIND 316 (372)
Q Consensus 258 ~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~pd~vvvpvG~GG~laGi~~~~~~~ 316 (372)
.|.|.+.++.+. ..+|+++.++-+..-+--...+++.+
T Consensus 77 -------------------~G~~~l~~~~~~--~~~D~vv~Ai~G~aGL~pt~~Ai~~g 114 (129)
T PF02670_consen 77 -------------------SGPEGLEELAEE--PEVDIVVNAIVGFAGLKPTLAAIKAG 114 (129)
T ss_dssp -------------------ESHHHHHHHHTH--TT-SEEEE--SSGGGHHHHHHHHHTT
T ss_pred -------------------eChHHHHHHhcC--CCCCEEEEeCcccchHHHHHHHHHCC
Confidence 124444444432 34799988865554444555555533
No 473
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=22.91 E-value=3.8e+02 Score=26.92 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=36.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCc-cc------cHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADM-EK------QSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~-~~------~~~k~~~l~~lGA~Vi 229 (372)
+.+++. ++|..|..+|...++.|.+++++.+.... .. ...-...++..|.+++
T Consensus 138 ~~vvVi-GgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 197 (427)
T TIGR03385 138 ENVVII-GGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLR 197 (427)
T ss_pred CeEEEE-CCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEE
Confidence 355554 68999999999999999999999875432 10 1112345667777664
No 474
>PRK07023 short chain dehydrogenase; Provisional
Probab=22.89 E-value=2.4e+02 Score=25.53 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=33.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
.+++.+++|.-|.++|......|.+++++..... . . .....|.++..+..+
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~----~-~--~~~~~~~~~~~~~~D 53 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRH----P-S--LAAAAGERLAEVELD 53 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcc----h-h--hhhccCCeEEEEEec
Confidence 3455566799999999999889999887754322 1 1 233457777555443
No 475
>PRK08013 oxidoreductase; Provisional
Probab=22.84 E-value=98 Score=30.92 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=24.3
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++++ ++|-.|.++|.+.++.|++++|+=.
T Consensus 6 V~Iv-GaGpaGl~~A~~La~~G~~v~viE~ 34 (400)
T PRK08013 6 VVIA-GGGMVGLAVACGLQGSGLRVAVLEQ 34 (400)
T ss_pred EEEE-CcCHHHHHHHHHHhhCCCEEEEEeC
Confidence 3443 6899999999999999999998854
No 476
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.83 E-value=1.2e+02 Score=25.61 Aligned_cols=31 Identities=6% Similarity=0.182 Sum_probs=20.8
Q ss_pred CeEEEecCcchHHHHH--HHHHHHcCCcEEEEE
Q 017391 176 KSIVAATGAGQHGVAT--AAACAKLALDCTVFM 206 (372)
Q Consensus 176 ~~~V~~aSsGN~G~Av--A~aa~~~Gi~~~Iv~ 206 (372)
+.+|+.++|||+..-+ +..|+..|++++.+.
T Consensus 105 Dvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 105 DVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp -EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 6777778889866555 444888999998774
No 477
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=22.82 E-value=99 Score=30.86 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=23.7
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEE
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
++++ ++|-.|.++|.+.++.|++++|+=
T Consensus 7 V~Iv-GaG~~Gl~~A~~L~~~G~~v~viE 34 (405)
T PRK08850 7 VAII-GGGMVGLALAAALKESDLRIAVIE 34 (405)
T ss_pred EEEE-CccHHHHHHHHHHHhCCCEEEEEc
Confidence 4443 689999999999999999998884
No 478
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=22.81 E-value=1.2e+02 Score=30.33 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.7
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++|-.|.++|.+.++.|++++|+=.
T Consensus 9 GaG~aGl~~A~~L~~~G~~v~viE~ 33 (390)
T TIGR02360 9 GAGPSGLLLGQLLHKAGIDNVILER 33 (390)
T ss_pred CccHHHHHHHHHHHHCCCCEEEEEC
Confidence 6899999999999999999998853
No 479
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=22.80 E-value=2.7e+02 Score=27.19 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=37.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHH----HHHHcCCEEEEEcC
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVL----LMKLLGAQVKAVDG 233 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~----~l~~lGA~Vi~v~~ 233 (372)
++...+-.-|.+.+++.+++++|++++++.|++-.. ....+. ..+..|+++..++.
T Consensus 149 kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~-~~~~~~~a~~~~~~~g~~~~~~~d 208 (302)
T PRK14805 149 KLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFP-DGQIVAEAQELAAKSGGKLVLTSD 208 (302)
T ss_pred EEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcC-CHHHHHHHHHHHHHcCCEEEEEcC
Confidence 344433224688999999999999999999987432 222221 23557888876654
No 480
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=22.77 E-value=4.2e+02 Score=28.52 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=26.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
+.+++.+++|..|.+++..+...|.+++++...
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn 113 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRS 113 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 355555667999999999999999999888754
No 481
>PRK10015 oxidoreductase; Provisional
Probab=22.74 E-value=1.1e+02 Score=31.13 Aligned_cols=29 Identities=38% Similarity=0.499 Sum_probs=24.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFM 206 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~ 206 (372)
+.+|+ ++|-.|.++|+.+++.|+++.|+=
T Consensus 7 DViIV--GgGpAG~~aA~~LA~~G~~VlliE 35 (429)
T PRK10015 7 DAIVV--GAGVAGSVAALVMARAGLDVLVIE 35 (429)
T ss_pred CEEEE--CcCHHHHHHHHHHHhCCCeEEEEe
Confidence 44454 689999999999999999987773
No 482
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=22.61 E-value=3.4e+02 Score=25.73 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=32.4
Q ss_pred eEEEecCcchHHHHHHHHHHHc-CCcEEEEEcCCCccccHHHHHHHHHcCCEEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKL-ALDCTVFMGTADMEKQSSKVLLMKLLGAQVKA 230 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~-Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~ 230 (372)
.+++.+.+|..|.+++..|+.+ |++++..... .++...++.+|++-+.
T Consensus 151 ~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~------~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 151 ALLIIGGAGGVGSILIQLARQLTGLTVIATASR------PESQEWVLELGAHHVI 199 (336)
T ss_pred EEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc------HHHHHHHHHcCCCEEE
Confidence 4444444688999988888887 9987666432 2455667788985433
No 483
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=22.59 E-value=1.2e+02 Score=31.79 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=23.2
Q ss_pred CcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 183 GAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
++|-.|.+.|..+++.|++++++-+
T Consensus 218 GgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 218 GGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEec
Confidence 6899999999999999999999964
No 484
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=22.48 E-value=1e+02 Score=30.67 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=34.0
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEcC-CCc-------cccHHHHHHHHHcCC
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMGT-ADM-------EKQSSKVLLMKLLGA 226 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~-~~~-------~~~~~k~~~l~~lGA 226 (372)
+++ .++|-.|.++|.+-++.|++++|+=.. ... .-.+.-++.|+.+|.
T Consensus 5 V~I-vGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 5 VAI-VGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred EEE-ECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 444 379999999999999999999998554 010 013445667777775
No 485
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=22.47 E-value=2.4e+02 Score=27.38 Aligned_cols=40 Identities=8% Similarity=0.154 Sum_probs=22.5
Q ss_pred HHHHHcCCcEEEEEcCCCcccc-HHHHHHHHHcCCEEEEEc
Q 017391 193 AACAKLALDCTVFMGTADMEKQ-SSKVLLMKLLGAQVKAVD 232 (372)
Q Consensus 193 ~aa~~~Gi~~~Iv~P~~~~~~~-~~k~~~l~~lGA~Vi~v~ 232 (372)
..++..|.+..|++-+..+..+ ..-...|...|-.|..+.
T Consensus 127 ~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~ 167 (275)
T PRK08335 127 KTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVIT 167 (275)
T ss_pred HHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEe
Confidence 3456677777777766665321 112345566677775444
No 486
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.42 E-value=1.2e+02 Score=31.49 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=25.0
Q ss_pred EEEecCcchHHHHHHHHHHH---cCCcEEEEEcCCC
Q 017391 178 IVAATGAGQHGVATAAACAK---LALDCTVFMGTAD 210 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~---~Gi~~~Iv~P~~~ 210 (372)
+++-++.||+|.+-..++++ .|+..+|++|+..
T Consensus 269 V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~~pk~s 304 (453)
T KOG2585|consen 269 VAILCGPGNNGGDGLVCGRHLAQHGYTPVIYYPKRS 304 (453)
T ss_pred EEEEeCCCCccchhHHHHHHHHHcCceeEEEeecCc
Confidence 55556789877776665554 8999999999865
No 487
>PRK08163 salicylate hydroxylase; Provisional
Probab=22.40 E-value=1.1e+02 Score=30.29 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.5
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEc
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMG 207 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P 207 (372)
+++. ++|=.|.++|.+.++.|++++|+=.
T Consensus 7 V~Iv-GaGiaGl~~A~~L~~~g~~v~v~Er 35 (396)
T PRK08163 7 VLIV-GGGIGGLAAALALARQGIKVKLLEQ 35 (396)
T ss_pred EEEE-CCcHHHHHHHHHHHhCCCcEEEEee
Confidence 4443 6899999999999999999999853
No 488
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=22.38 E-value=3.3e+02 Score=27.67 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=45.8
Q ss_pred HHHHcCCCeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc
Q 017391 169 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234 (372)
Q Consensus 169 ~a~~~g~~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~ 234 (372)
+++..|.+..|++ +||-.+..+|.-+-..|=.-.|++|.-+ -..........||+.+.||-+
T Consensus 43 ~ae~~G~k~ava~-~sgT~AL~laL~al~ig~GDeVI~ps~T---fvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 43 FAEYLGVKYAVAV-SSGTAALHLALLALAIGPGDEVIVPSFT---FVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred HHHHhCCCeEEEe-cChHHHHHHHHHhcCCCCCCEEEecCCc---hHHHHHHHHHcCCeEEEEecC
Confidence 4566788887775 6898888888875555555678888765 345666788899999998763
No 489
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=22.36 E-value=2.3e+02 Score=28.63 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=34.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCcc-c-cH----HHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADME-K-QS----SKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~-~-~~----~k~~~l~~lGA~Vi 229 (372)
++++. ++|..|..+|...+++|.+++++.+....- . .+ .-.+.++..|.+++
T Consensus 159 ~vvII-GgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~ 216 (438)
T PRK07251 159 RLGII-GGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFL 216 (438)
T ss_pred eEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 45554 689999999999999999999997654221 0 11 11234667787663
No 490
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=22.35 E-value=2.3e+02 Score=24.66 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=38.9
Q ss_pred CeEEEecCcchHHHHHHHHHHH-cCCcEEEEEcCCCccccHHHHHHHHHcCCEEEEEcCc---hhHHHHHHHHHHHhc
Q 017391 176 KSIVAATGAGQHGVATAAACAK-LALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC---FKEASSEAIRNWVGN 249 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~-~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi~v~~~---~~da~~~a~~~~~~~ 249 (372)
++.|+.++ +|..++.+|.+ .|++|-++.... ..+. .-+-..|||+..++. .+.+.+. .+.|...
T Consensus 57 ~~GIliCG---tGiG~siaANK~~GIRAA~~~d~~-----~A~~-ar~hNnaNVL~lG~r~~g~~~a~~i-v~~fL~t 124 (141)
T TIGR01118 57 NLGIVIDA---YGAGSFMVATKIKGMIAAEVSDER-----SAYM-TRGHNNARMITVGAEIVGDELAKNI-VKAFVEG 124 (141)
T ss_pred ceEEEEcC---CCHhHhhhhhcCCCeEEEEECCHH-----HHHH-HHHHcCCcEEEECccccCHHHHHHH-HHHHHcC
Confidence 44444454 35778888888 999999885322 2232 223468999988873 3444433 3556543
No 491
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=22.30 E-value=3.3e+02 Score=26.20 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=32.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~V 228 (372)
+++++. ++|..|.+++..|+.+|.+.++.+.. .+.+....+.+|+..
T Consensus 168 ~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~-----~~~~~~~~~~~g~~~ 214 (351)
T cd08285 168 DTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS-----RPNRVELAKEYGATD 214 (351)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHHHHcCCce
Confidence 345554 57899999999999999975555433 235666778889754
No 492
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=22.23 E-value=7.7e+02 Score=24.36 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=42.8
Q ss_pred CCCcCcchhhHHHHHHHHHHHHc----CCCeE-EEecCcchHHHHHHHHHH---HcCCcEEEEEcCCCccccHHHHHHHH
Q 017391 151 DLNHVGAHKINNAIGQAMIAKRM----GRKSI-VAATGAGQHGVATAAACA---KLALDCTVFMGTADMEKQSSKVLLMK 222 (372)
Q Consensus 151 ~~~pTGSfKdRga~~~~~~a~~~----g~~~~-V~~aSsGN~G~AvA~aa~---~~Gi~~~Iv~P~~~~~~~~~k~~~l~ 222 (372)
+..+.|....|.+....+.. .. ..+.+ |+.++++++|..++..+- ..|= .|++|.-.- ..-...++
T Consensus 65 Y~~~~G~~~lR~aia~~~~~-~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd--~Vlv~~P~y---~~~~~~~~ 138 (396)
T PRK09257 65 YLPIEGLAAYRQAVQELLFG-ADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDA--KVWVSDPTW---PNHRAIFE 138 (396)
T ss_pred cCCCCCCHHHHHHHHHHhcC-CCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCC--eEEECCCCc---ccHHHHHH
Confidence 33346777788776654321 11 12344 344556788887775322 3453 455555332 23345778
Q ss_pred HcCCEEEEEc
Q 017391 223 LLGAQVKAVD 232 (372)
Q Consensus 223 ~lGA~Vi~v~ 232 (372)
.+|++++.++
T Consensus 139 ~~g~~~v~v~ 148 (396)
T PRK09257 139 AAGLEVKTYP 148 (396)
T ss_pred HcCCcEEEEe
Confidence 8999998775
No 493
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.12 E-value=2.5e+02 Score=28.42 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=33.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~Vi 229 (372)
.+++. ++|-.|.++|...+..|.+++++-+.... ..+....++..+|.+++
T Consensus 7 ~v~ii-G~g~~G~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~~~l~~~~~~~~ 57 (450)
T PRK14106 7 KVLVV-GAGVSGLALAKFLKKLGAKVILTDEKEED-QLKEALEELGELGIELV 57 (450)
T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCCchH-HHHHHHHHHHhcCCEEE
Confidence 34443 56669999999999999999988664321 12233345666676653
No 494
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=22.10 E-value=2.6e+02 Score=28.16 Aligned_cols=114 Identities=22% Similarity=0.264 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCEEEEEcC--chhHHHHHHHHHHHhccCCcEEEeccccCCCChhHHHHhhHHHHHHHHHHHHHHHhCCC
Q 017391 215 SSKVLLMKLLGAQVKAVDG--CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK 292 (372)
Q Consensus 215 ~~k~~~l~~lGA~Vi~v~~--~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~lv~~gq~t~g~Ei~~Ql~~~~g~~ 292 (372)
.++...+...|++++.++. ...+-+....+.+.+..++...+.+.. .=.|..+.|.+ .|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV----------------~T~e~a~~L~~-aG-- 170 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNV----------------VTYEGAKDLID-AG-- 170 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-----------------SHHHHHHHHH-TT--
T ss_pred HHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEeccc----------------CCHHHHHHHHH-cC--
Confidence 4566666667888877764 122222222333434333222322211 11344445543 33
Q ss_pred CCEEEEcCCchh-------------HHHhhhhhhc--CCCCcEEEEEecCCCCCCCccccccccCCCceeecC
Q 017391 293 PDVLLACVGSGS-------------NALGLFHEFI--NDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHG 350 (372)
Q Consensus 293 pd~vvvpvG~GG-------------~laGi~~~~~--~~~~vrvigVe~~gs~~~~~~~a~~l~~G~~gv~~g 350 (372)
.|.|-|.+|.|+ .+++++...+ ..-.+.||+ .|---.++.-+..|+.|...|+-|
T Consensus 171 ad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIA---DGGi~~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 171 ADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIA---DGGIRTSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp -SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEE---ESS-SSHHHHHHHHHTT-SEEEES
T ss_pred CCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceee---cCCcCcccceeeeeeecccceeec
Confidence 688999988877 3333432222 244677776 332222334445555555444444
No 495
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.09 E-value=2.4e+02 Score=29.01 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=34.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCc------cccHHHHHHHHHcCCEEE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADM------EKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~------~~~~~k~~~l~~lGA~Vi 229 (372)
+++++. ++|..|.-+|...+++|.+++++.....+ .....-.+.|+..|-+|+
T Consensus 175 ~~vvII-GgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~ 233 (466)
T PRK06115 175 KHLVVI-GAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFK 233 (466)
T ss_pred CeEEEE-CCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Confidence 345554 68999999999999999999998643221 001222345666776653
No 496
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=22.05 E-value=3.6e+02 Score=20.54 Aligned_cols=43 Identities=26% Similarity=0.287 Sum_probs=30.6
Q ss_pred CcchHHHHHHHHHHHcC---CcEEEEEcCCCccccHHHHHHH-HHcCCEEEE
Q 017391 183 GAGQHGVATAAACAKLA---LDCTVFMGTADMEKQSSKVLLM-KLLGAQVKA 230 (372)
Q Consensus 183 SsGN~G~AvA~aa~~~G---i~~~Iv~P~~~~~~~~~k~~~l-~~lGA~Vi~ 230 (372)
++||.|.+++......| .++.++... .+++...+ +.+|.++..
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r-----~~~~~~~~~~~~~~~~~~ 52 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSR-----SPEKAAELAKEYGVQATA 52 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEES-----SHHHHHHHHHHCTTEEES
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccC-----cHHHHHHHHHhhcccccc
Confidence 68999999999999999 777766433 23444444 667766643
No 497
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=21.98 E-value=1e+02 Score=30.45 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=24.7
Q ss_pred EEEecCcchHHHHHHHHHHHcCCcEEEEEcC
Q 017391 178 IVAATGAGQHGVATAAACAKLALDCTVFMGT 208 (372)
Q Consensus 178 ~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~ 208 (372)
+|++ ++|-.|.++|++.++.|++++|+=..
T Consensus 10 ViIV-GaG~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 10 IAVI-GGGPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred EEEE-CcCHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4443 68999999999999999999888543
No 498
>PRK13984 putative oxidoreductase; Provisional
Probab=21.96 E-value=2.8e+02 Score=29.59 Aligned_cols=52 Identities=17% Similarity=0.380 Sum_probs=35.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCc-------------c--ccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADM-------------E--KQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~-------------~--~~~~k~~~l~~lGA~Vi 229 (372)
.+++. ++|-.|.++|...++.|++++|+=..... . .....+.+++.+|.+++
T Consensus 285 ~v~II-GaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~ 351 (604)
T PRK13984 285 KVAIV-GSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIH 351 (604)
T ss_pred eEEEE-CCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEE
Confidence 44544 58999999999999999999988432211 0 01234567888998873
No 499
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=21.87 E-value=3.8e+02 Score=25.38 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=31.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCcEEEEEcCCCccccHHHHHHHHHcCCE
Q 017391 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 227 (372)
Q Consensus 176 ~~~V~~aSsGN~G~AvA~aa~~~Gi~~~Iv~P~~~~~~~~~k~~~l~~lGA~ 227 (372)
..+++. ++|..|.+++..|+.+|++++++ .... ...+...++.+|+.
T Consensus 166 ~~vlI~-g~g~~g~~~~~la~~~G~~v~~~-~~~~---~~~~~~~~~~~g~~ 212 (306)
T cd08258 166 DTVVVF-GPGPIGLLAAQVAKLQGATVVVV-GTEK---DEVRLDVAKELGAD 212 (306)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCEEEEE-CCCC---CHHHHHHHHHhCCc
Confidence 355554 47899999999999999995443 2111 24566677788874
No 500
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=21.85 E-value=3.3e+02 Score=28.10 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=34.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCC-cEEEEEcCCC--ccccHHHHHHHHHcCCEEE
Q 017391 177 SIVAATGAGQHGVATAAACAKLAL-DCTVFMGTAD--MEKQSSKVLLMKLLGAQVK 229 (372)
Q Consensus 177 ~~V~~aSsGN~G~AvA~aa~~~Gi-~~~Iv~P~~~--~~~~~~k~~~l~~lGA~Vi 229 (372)
.+++. ++||.|.-+|..+..+|. ++++++.... .+.....+..++..|.+++
T Consensus 284 ~VvVI-GgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~ 338 (467)
T TIGR01318 284 RVVVL-GGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFL 338 (467)
T ss_pred EEEEE-CCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEE
Confidence 44443 689999999999999996 6999986532 1112334445666676653
Done!