RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017391
(372 letters)
>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain.
Length = 410
Score = 595 bits (1537), Expect = 0.0
Identities = 213/304 (70%), Positives = 255/304 (83%), Gaps = 3/304 (0%)
Query: 72 PGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERL 131
G+FG+FGGK+VPETL+T LS LEA FN + D +FQEEL+ L+DYVGRETPLYFAERL
Sbjct: 16 FGRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYVGRETPLYFAERL 75
Query: 132 TDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVAT 191
T+HY+ GEGPEIYLKREDLNH GAHKINNA+ QA++AKR+G+K I+A TGAGQHGVAT
Sbjct: 76 TEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVAT 135
Query: 192 AAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNWVG 248
A CA+ L+C V+MG DME+Q+ V M+LLGA+V+ V K+A+SEAIR+WV
Sbjct: 136 ATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVT 195
Query: 249 NLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALG 308
N+E ++Y+ G+V GPHP P+MVR+F S+IGKETR+QAMEKWGGKPDVL+ACVG GSNA+G
Sbjct: 196 NVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMG 255
Query: 309 LFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHS 368
LFHEFI+DEDVRLIGVEAAGFGLDSGKHAATL KGEVGV HGAMSYLLQDE+GQI+ HS
Sbjct: 256 LFHEFIDDEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHS 315
Query: 369 VGVG 372
+ G
Sbjct: 316 ISAG 319
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.
Length = 397
Score = 518 bits (1336), Expect = 0.0
Identities = 184/310 (59%), Positives = 228/310 (73%), Gaps = 15/310 (4%)
Query: 73 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLT 132
G FG FGG+FVPETL+ L LE + D +FQ EL L++YVGR TPLYFAERL+
Sbjct: 9 GYFGEFGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFAERLS 68
Query: 133 DHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATA 192
+H G +IYLKREDLNH GAHKINN +GQA++AKRMG+K I+A TGAGQHGVATA
Sbjct: 69 EHLG-----GAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATA 123
Query: 193 AACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD---GCFKEASSEAIRNWVGN 249
A A L L+C ++MG D+E+Q+ V MKLLGA+V V K+A +EA+R+WV N
Sbjct: 124 TAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTN 183
Query: 250 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGL 309
+E ++YL G+V GPHP P MVR+FQS+IG+E + Q +EK G PD ++ACVG GSNA+G+
Sbjct: 184 VEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGI 243
Query: 310 FHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSV 369
FH FI+DE VRLIGVEAAG GL++GKHAATL KG GV HGA +YLLQDE+GQIL THS+
Sbjct: 244 FHPFIDDESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSI 303
Query: 370 -------GVG 372
GVG
Sbjct: 304 SAGLDYPGVG 313
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport
and metabolism].
Length = 396
Score = 493 bits (1272), Expect = e-175
Identities = 175/304 (57%), Positives = 222/304 (73%), Gaps = 9/304 (2%)
Query: 72 PGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERL 131
G FG FGG++VPETL+ L LE + D +FQ EL L+DY GR TPLYFAERL
Sbjct: 6 KGYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERL 65
Query: 132 TDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVAT 191
T+H G +IYLKREDLNH GAHKINNA+GQA++AKRMG+ I+A TGAGQHGVAT
Sbjct: 66 TEHL------GAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVAT 119
Query: 192 AAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD---GCFKEASSEAIRNWVG 248
A A A L+C ++MG D+E+Q+ V M+LLGA+V V G K+A +EA+R+WV
Sbjct: 120 ATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVT 179
Query: 249 NLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALG 308
N+E ++YL G+ GPHP P +VR+FQS+IG+E + Q +EK G PD ++ACVG GSNA+G
Sbjct: 180 NVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIG 239
Query: 309 LFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHS 368
+FH FI+DE VRLIGVEAAG G+++GKHAATL G GV HG +YLLQDE+GQIL +HS
Sbjct: 240 IFHPFIDDESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHS 299
Query: 369 VGVG 372
+ G
Sbjct: 300 ISAG 303
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 431 bits (1111), Expect = e-151
Identities = 160/303 (52%), Positives = 208/303 (68%), Gaps = 8/303 (2%)
Query: 73 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLT 132
G FG +GG+FVP L L LEA + + +D F EL L+ YVGR TPLY A+RL+
Sbjct: 13 GFFGEYGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHAKRLS 72
Query: 133 DHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATA 192
+ G +IYLKREDLNH GAHKINN +GQA++AKRMG+K ++A TGAGQHGVATA
Sbjct: 73 EEL-----GGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATA 127
Query: 193 AACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD---GCFKEASSEAIRNWVGN 249
A A L+C ++MG D+E+Q V MKLLGA+V V KEA A +++ +
Sbjct: 128 TAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKD 187
Query: 250 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGL 309
+ ++Y G+VVGPHP P+MVR+FQS+IG+E R+Q +E G PD ++ACVG GSNA+GL
Sbjct: 188 PDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGL 247
Query: 310 FHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSV 369
F F++DE VRL+GVE AG GLD G+HAATL G+ GV HG SY+LQDE+G+ HS+
Sbjct: 248 FSAFLDDESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSI 307
Query: 370 GVG 372
G
Sbjct: 308 AAG 310
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit. Tryptophan
synthase catalyzes the last step in the biosynthesis of
tryptophan. the beta chain contains the functional
domain for or the synthesis of tryptophan from indole
and serine. The enzyme requires pyridoxal-phosphate as a
cofactor. The pyridoxal-P attachment site is contained
within the conserved region
[LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P
attachment site] which is present between residues
90-100 of the model [Amino acid biosynthesis, Aromatic
amino acid family].
Length = 385
Score = 425 bits (1095), Expect = e-149
Identities = 173/303 (57%), Positives = 219/303 (72%), Gaps = 8/303 (2%)
Query: 73 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLT 132
G FG FGG++VPETL+ L LEA F D F EL+ LR+Y GR TPL FA LT
Sbjct: 1 GYFGDFGGQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNYAGRPTPLTFAPNLT 60
Query: 133 DHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATA 192
+ G +IYLKREDLNH GAHKINNA+GQA++AKRMG+K I+A TGAGQHGVATA
Sbjct: 61 EAL-----GGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATA 115
Query: 193 AACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD---GCFKEASSEAIRNWVGN 249
A A L LDC V+MG D+E+Q V M+LLGA+V V G K+A +EA+R+WV +
Sbjct: 116 TAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTS 175
Query: 250 LEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGL 309
++ ++Y+ G+ VGPHP P MVR+FQS+IG+E ++Q +E+ G PD ++ACVG GSNA+G+
Sbjct: 176 VDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGI 235
Query: 310 FHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSV 369
F+ FI+D V+LIGVEA G G+D+ KHAATLAKG GV HG +YLLQDE+GQIL HSV
Sbjct: 236 FYAFIDDPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSV 295
Query: 370 GVG 372
G
Sbjct: 296 SAG 298
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase
is a bifunctional enzyme that catalyses the last two
steps in the biosynthesis of L-tryptophan via its alpha
and beta reactions. In the alpha reaction, indole
3-glycerol phosphate is cleaved reversibly to
glyceraldehyde 3-phosphate and indole at the active site
of the alpha subunit. In the beta reaction, indole
undergoes a PLP-dependent reaction with L-serine to form
L-tryptophan at the active site of the beta subunit.
Members of this CD, Trp-synth_B, are found in all three
major phylogenetic divisions.
Length = 365
Score = 423 bits (1091), Expect = e-148
Identities = 166/286 (58%), Positives = 207/286 (72%), Gaps = 8/286 (2%)
Query: 90 CLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKR 149
L LE EF+ D F EEL +DYVGR TPLY A+RL+++ G +IYLKR
Sbjct: 2 ALEELEQEFSKERYDPDFPEELRELYKDYVGRPTPLYRAKRLSEYLG-----GAKIYLKR 56
Query: 150 EDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTA 209
EDLNH GAHKINNA+GQA++AKRMG+K ++A TGAGQHGVATA ACA L+C ++MG
Sbjct: 57 EDLNHTGAHKINNALGQALLAKRMGKKRVIAETGAGQHGVATATACALFGLECEIYMGAV 116
Query: 210 DMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPC 266
D+E+Q V M+LLGA+V V G K+A SEAIR+WV N+E ++YL G+VVGPHP
Sbjct: 117 DVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPY 176
Query: 267 PIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEA 326
P MVR+FQS+IG+E +KQ +EK G PDV++ACVG GSNA GLF+ FIND+DV+LIGVEA
Sbjct: 177 PNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFINDKDVKLIGVEA 236
Query: 327 AGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVG 372
G GL++G HAA L G GV HG Y LQDE+GQI+ HS+ G
Sbjct: 237 GGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAG 282
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 402 bits (1035), Expect = e-137
Identities = 161/311 (51%), Positives = 219/311 (70%), Gaps = 9/311 (2%)
Query: 65 REYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETP 124
++Y G++G FGG +VPETL+ L L+ + +++ +FQ+ L++Y GR TP
Sbjct: 214 KKYLSDPAGRYGTFGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNYAGRPTP 273
Query: 125 LYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGA 184
L A+RL+D Y G IYLKREDLNH G+HKINNA+GQA++AKRMG+ I+A TGA
Sbjct: 274 LTEAKRLSDIY------GARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGA 327
Query: 185 GQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSE 241
GQHGVATA ACA L CT+FMG D+++Q+ V MKLLGA V V K+A +E
Sbjct: 328 GQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNE 387
Query: 242 AIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVG 301
AIR+WV ++ ++YL G+ VGPHP P MV FQS+IG+E ++Q E+ G PD ++ACVG
Sbjct: 388 AIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVG 447
Query: 302 SGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEG 361
GSNA+G+F+ F++D V+LIGVEA G G+++G+HAAT+ KG GV HG+M+YL+QDE G
Sbjct: 448 GGSNAIGIFYHFLDDPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENG 507
Query: 362 QILGTHSVGVG 372
QIL HS+ G
Sbjct: 508 QILEPHSISAG 518
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate
synthase/tryptophan synthase subunit beta; Provisional.
Length = 695
Score = 316 bits (812), Expect = e-102
Identities = 153/305 (50%), Positives = 208/305 (68%), Gaps = 8/305 (2%)
Query: 75 FGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDH 134
+G+FGG++VPE LIT L LE + D +F +EL+T + YVGR +PL A R +
Sbjct: 279 WGQFGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAER 338
Query: 135 YRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAA 194
+ + G ++LKREDLNH GAHKINNA+GQA++ KRMG+ ++A TGAGQHGVATA
Sbjct: 339 VKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATV 398
Query: 195 CAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRNWVGNLE 251
CA L L C ++MG D +Q+ V M++LGA+V V D K+A +EA+R+WV N++
Sbjct: 399 CAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVK 458
Query: 252 KSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGG--KPDVLLACVGSGSNALGL 309
++YL GTV GPHP P MVR+FQ IIG+E KQ ++ W G PD + ACVG GSNA+G+
Sbjct: 459 DTHYLLGTVAGPHPFPAMVRDFQKIIGEEA-KQQLQDWYGIDHPDAICACVGGGSNAIGV 517
Query: 310 FHEFINDEDVRLIGVEAAGFGLDSGKHAATLA--KGEVGVYHGAMSYLLQDEEGQILGTH 367
+ F++DE V L G EA G G +SGKHA A GE+G++ GA SYLL+++EGQ L T+
Sbjct: 518 MNAFLDDERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTY 577
Query: 368 SVGVG 372
S+ G
Sbjct: 578 SISAG 582
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 165 bits (421), Expect = 2e-49
Identities = 74/250 (29%), Positives = 105/250 (42%), Gaps = 37/250 (14%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKS---IV 179
TPL +RL+ K G IYLK E LN G+ K A+ ++A+ G+ I+
Sbjct: 1 TPLVRLKRLS------KLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVII 54
Query: 180 AATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEAS 239
+TG G G+A AAA A+L L CT+ M + KV M+ LGA+V V G F +A
Sbjct: 55 ESTG-GNTGIALAAAAARLGLKCTIVMP-EGASPE--KVAQMRALGAEVVLVPGDFDDAI 110
Query: 240 SEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLAC 299
+ A +YY+ Q IG E +Q G KPD ++
Sbjct: 111 ALAKELAE-EDPGAYYVNQFD------NPANIAGQGTIGLEILEQL---GGQKPDAVVVP 160
Query: 300 VGSGSNALGLFHEFIND-EDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQD 358
VG G N G+ +V++IGVE + + L LL
Sbjct: 161 VGGGGNIAGIARALKELLPNVKVIGVEP---EVVTVSDEEAL----------EAIRLLAR 207
Query: 359 EEGQILGTHS 368
EEG ++ S
Sbjct: 208 EEGILVEPSS 217
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed.
Length = 427
Score = 146 bits (370), Expect = 6e-40
Identities = 104/306 (33%), Positives = 139/306 (45%), Gaps = 64/306 (20%)
Query: 70 LNPGKFGRFGGKFV-PETL--ITCLSLLEAEFN---FVLQDTKFQEELSTALRDYVGRET 123
L+PG G+ V PE L I + L+E E + ++ EE+ R + R T
Sbjct: 30 LDPG-----TGEPVTPEDLAPIFPMELIEQEVSTERYI----DIPEEVREIYR--LWRPT 78
Query: 124 PLYFAERLTDHYRNEK--GEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAA 181
PL A RL EK G +IY K E ++ G+HK N A+ QA K+ G K +
Sbjct: 79 PLIRARRL------EKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGIKRLTTE 132
Query: 182 TGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEAS-- 239
TGAGQ G A A ACA L+CTVFM E++ + LM+ GA+V EA
Sbjct: 133 TGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRK 192
Query: 240 ----------------SEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRK 283
SEA+ + + Y G+V+ H V Q++IG E +K
Sbjct: 193 ILAEDPDHPGSLGIAISEAVEDAAKR-PDTKYALGSVL-NH-----VLLHQTVIGLEAKK 245
Query: 284 QAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE-----DVRLIGVEAAGFGLDSGKHAA 338
Q +E G PDV++ CVG GSN GL F+ D+ D R I VE A
Sbjct: 246 Q-LELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAA--------CP 296
Query: 339 TLAKGE 344
TL KGE
Sbjct: 297 TLTKGE 302
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase
beta-subunit (paralog of TrpB) [General function
prediction only].
Length = 432
Score = 140 bits (355), Expect = 7e-38
Identities = 88/251 (35%), Positives = 116/251 (46%), Gaps = 47/251 (18%)
Query: 119 VGRETPLYFAERLTDHYRNEK--GEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRK 176
+GR TPL A+ L E+ G IY K E + G+HKIN A+ QA AK+ G K
Sbjct: 75 IGRPTPLIRAKNL------EEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAK 128
Query: 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK 236
+ TGAGQ G A + A A L TVFM ++ + LM+L GA+V
Sbjct: 129 RLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELT 188
Query: 237 E------------------ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIG 278
E A SEAI + N E + Y G+V+ V Q++IG
Sbjct: 189 EFGRKILKEDPDHPGSLGIAISEAIEYALKN-ENTKYSLGSVLN------HVLLHQTVIG 241
Query: 279 KETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE-----DVRLIGVEAAGFGLDS 333
E +KQ +E+ G PDV++ CVG GSN GL + FI D+ + R I VE
Sbjct: 242 LEAKKQ-LEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEP------- 293
Query: 334 GKHAATLAKGE 344
K L KGE
Sbjct: 294 -KACPKLTKGE 303
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like
enzyme. This model represents a family of
pyridoxal-phosphate dependent enzyme (pfam00291) closely
related to the beta subunit of tryptophan synthase
(TIGR00263). However, the only case in which a member of
this family replaces a member of TIGR00263 is in
Sulfolobus species which contain two sequences which hit
this model, one of which is proximal to the alpha
subunit. In every other case so far, either the species
appears not to make tryptophan (there is no trp synthase
alpha subunit), or a trp synthase beta subunit matching
TIGR00263 is also found [Unknown function, Enzymes of
unknown specificity].
Length = 419
Score = 132 bits (335), Expect = 3e-35
Identities = 90/251 (35%), Positives = 118/251 (47%), Gaps = 47/251 (18%)
Query: 119 VGRETPLYFAERLTDHYRNEK--GEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRK 176
+GR TPL A+ L E+ G IY K E ++ G+HKIN AI QA AK G K
Sbjct: 65 IGRPTPLIRAKGL------EELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAK 118
Query: 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK 236
+V TGAGQ G A + A A L+C VFM ++ + LM+L GA+V F
Sbjct: 119 RLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFT 178
Query: 237 E------------------ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIG 278
E A SEAI + + E + Y G+V+ V Q++IG
Sbjct: 179 EFGREVLKEDPDHPGSLGIAISEAIEYALSD-EDTKYSLGSVLN------HVLLHQTVIG 231
Query: 279 KETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE-----DVRLIGVEAAGFGLDS 333
E +KQ ME+ G PDV++ CVG GSN GL F+ D+ D R I E
Sbjct: 232 LEAKKQ-MEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEP------- 283
Query: 334 GKHAATLAKGE 344
K TL +GE
Sbjct: 284 -KACPTLTRGE 293
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 108 bits (272), Expect = 3e-27
Identities = 59/215 (27%), Positives = 84/215 (39%), Gaps = 20/215 (9%)
Query: 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMG 174
+ +G TPL G +YLK E LN G+ K A + A G
Sbjct: 1 ISLGIGP-TPLVRLPSP--------LLGARVYLKLESLNPTGSFKDRGAAYLLLRALERG 51
Query: 175 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234
+V A+ +G G A AAA A+L L T+ + K+LLM+ LGA+V V
Sbjct: 52 AT-VVEAS-SGNTGRALAAAAARLGLKVTIVVP-EGASPG--KLLLMRALGAEVILVVS- 105
Query: 235 FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPD 294
+ +A+ E G + V IG E +Q + G PD
Sbjct: 106 -EGDYDDALELAEEAAELLAAYDGPIPLGQYNNPNVIAGYKTIGLEILEQLGQ---GDPD 161
Query: 295 VLLACVGSGSNALGLFHEFIN-DEDVRLIGVEAAG 328
++ VG G A G+ +R+IGVE G
Sbjct: 162 AVVVPVGGGGLAAGIARGLKELGPGIRVIGVEPEG 196
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions.
Length = 304
Score = 81.4 bits (202), Expect = 2e-17
Identities = 62/239 (25%), Positives = 97/239 (40%), Gaps = 42/239 (17%)
Query: 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKIN---NAIGQAMIAK 171
++ V R TPL + L++ G E+YLK E+L G+ KI N + +
Sbjct: 11 IKPVV-RRTPLLTSPTLSELL------GAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEE 63
Query: 172 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFM--GTADMEKQSSKVLLMKLLGAQVK 229
R K +VAA+ AG H A A L + T+ M ++KV + GA+V
Sbjct: 64 R--AKGVVAAS-AGNHAQGVAYAAKLLGIPATIVMPETAP-----AAKVDATRAYGAEVV 115
Query: 230 AVDGCFKEASSEAIRNWVGNLEKSYYLTG-TVVGPHPCPIMVREFQSIIGKETRKQAMEK 288
F EA ++A L + G T + P P ++ Q IG E +Q
Sbjct: 116 LYGEDFDEAEAKARE-----LAEE---EGLTFIHPFDDPDVI-AGQGTIGLEILEQV--- 163
Query: 289 WGGKPDVLLACVGSGSNALG--LFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEV 345
D + VG G G + ++ + ++IGVE G + + LA G+
Sbjct: 164 --PDLDAVFVPVGGGGLIAGIATAVKALSP-NTKVIGVEPEGA--PAMAQS--LAAGKP 215
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 77.6 bits (192), Expect = 7e-16
Identities = 65/244 (26%), Positives = 93/244 (38%), Gaps = 47/244 (19%)
Query: 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKIN---NAIGQAMIAK 171
L+ V TPL + L++ G EIYLKRE+L VG+ KI N + +
Sbjct: 19 LKGVV-NPTPLQRSPSLSERL------GAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEE 71
Query: 172 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFM--GTADMEKQSSKVLLMKLLGAQVK 229
++AA+ AG H A A +L + T+ M T + KV + GA+V
Sbjct: 72 ERAAG-VIAAS-AGNHAQGVAYAAKRLGIKATIVMPETTPKI-----KVDATRGYGAEVI 124
Query: 230 AVDGCFKEASSEAIRNWVGNLEKSYYLTG-TVVGP--HPCPIMVREFQSIIGKETRKQAM 286
F +A + A L + G T V P P V Q I E +
Sbjct: 125 LHGDNFDDAYAAAEE-----LAEE---EGLTFVPPFDDP---DVIAGQGTIALE----IL 169
Query: 287 EKWGGKPDVLLACVGSG---SNALGLFHEFINDEDVRLIGVEAAGF-----GLDSGKHAA 338
E+ PD + VG G S ++++IGVE G L +GK
Sbjct: 170 EQLPDLPDAVFVPVGGGGLISGIATALKAL--SPEIKVIGVEPEGAPSMYASLKAGKIVV 227
Query: 339 TLAK 342
L
Sbjct: 228 VLPD 231
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants.
Length = 324
Score = 73.0 bits (180), Expect = 2e-14
Identities = 62/224 (27%), Positives = 88/224 (39%), Gaps = 48/224 (21%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAM---IAKRMGRKSIV 179
TPL A RL E+ G +Y+K E LN G+ K G + AK +G K++
Sbjct: 23 TPLVRAPRLG-----ERLGGKNLYVKDEGLNPTGSFK---DRGMTVAVSKAKELGVKAVA 74
Query: 180 AATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG----CF 235
A+ G + AA A+ + C VF+ A K+ GA V AV+G
Sbjct: 75 CAS-TGNTSASLAAYAARAGIKCVVFLP-AGKALG--KLAQALAYGATVLAVEGNFDDAL 130
Query: 236 KEASSEAIRNW--VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK- 292
+ A NW + N Y L G Q I E E+ G +
Sbjct: 131 RLVRELAEENWIYLSNSLNPYRLEG---------------QKTIAFEI----AEQLGWEV 171
Query: 293 PDVLLACVGSGSNALGL---FHEFIN----DEDVRLIGVEAAGF 329
PD ++ VG+G N + F E D R++GV+A G
Sbjct: 172 PDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGA 215
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino
acid transport and metabolism].
Length = 323
Score = 65.8 bits (161), Expect = 5e-12
Identities = 60/247 (24%), Positives = 92/247 (37%), Gaps = 46/247 (18%)
Query: 117 DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVG-----AHKINNAIGQAMIAK 171
+ + TP+ RL+ H G EIY+KR+DL + K+ +G+ A
Sbjct: 10 ELIFGPTPIQKLPRLSAHL------GVEIYIKRDDLTGLAFGGNKIRKLEFLLGE---AL 60
Query: 172 RMGRKSIVAATGAGQ--HGVATAAACAKLALDCTVFM-GTADMEKQSSKVLLMKLLGAQV 228
R G ++V G Q H TAA AKL L C + + + +LL KL+GA+V
Sbjct: 61 RKGADTLVTY-GGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEV 119
Query: 229 KAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPI------------MVREFQSI 276
+AVD + + + K G P I VR I
Sbjct: 120 RAVDAGTDIGINASAEELAEEVRKQ--------GGKPYVIPEGGSSPLGALGYVRLALEI 171
Query: 277 IGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEF-INDEDVRLIGVEAAGFGLDSGK 335
+ + K D ++ GSG GL DV +IG++ + +
Sbjct: 172 AEQAEQLL-------KFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKE 224
Query: 336 HAATLAK 342
LA+
Sbjct: 225 QVLNLAQ 231
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD):
Pyridoxal phosphate (PLP)-dependent enzyme which
catalyzes the conversion of
1-aminocyclopropane-L-carboxylate (ACC), a precursor of
the plant hormone ethylene, to alpha-ketobutyrate and
ammonia.
Length = 307
Score = 65.5 bits (160), Expect = 6e-12
Identities = 60/239 (25%), Positives = 91/239 (38%), Gaps = 39/239 (16%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLN---HVGAHKINNAIGQAMIAKRMGRKSIV 179
TP+ + RL++H G EIY KR+D N G +KI A G ++V
Sbjct: 1 TPIQYLPRLSEHL----GGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADTLV 56
Query: 180 AATGAGQ--HGVATAAACAKLALDCTVFM-----GTADMEKQSSKVLLMKLLGAQVKAVD 232
G Q H AA AKL L C + + + + +LL +++GA V+ V
Sbjct: 57 TV-GGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVS 115
Query: 233 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIG--------KETRKQ 284
F ++ +E G P I + +G E +Q
Sbjct: 116 AGFDIGIRKSFEEAAEEVEAK--------GGKPYVIPAGGSEHPLGGLGYVGFVLEIAQQ 167
Query: 285 AMEKWGGKPDVLLACVGSGSNALGLFHEFIND-EDVRLIGVEAAGFGLDSGKHAATLAK 342
E+ G K D ++ C +GS GL R+IG++A S K T A+
Sbjct: 168 E-EELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDA------SAKPEKTKAQ 219
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated.
Length = 420
Score = 65.2 bits (160), Expect = 1e-11
Identities = 62/230 (26%), Positives = 90/230 (39%), Gaps = 46/230 (20%)
Query: 114 ALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKIN---NAIGQAMIA 170
L+D V ETPL + L++ Y G +YLKREDL V ++K+ NAI Q ++
Sbjct: 18 RLKDVV-PETPLQRNDYLSEKY------GANVYLKREDLQPVRSYKLRGAYNAISQ--LS 68
Query: 171 KRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ--- 227
+V A+ AG H A AC L + +FM +Q K+ ++ G +
Sbjct: 69 DEELAAGVVCAS-AGNHAQGVAYACRHLGIPGVIFM-PVTTPQQ--KIDQVRFFGGEFVE 124
Query: 228 VKAV----DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGP--HPCPIMVREFQSIIGKET 281
+ V D A A T + P P V Q + E
Sbjct: 125 IVLVGDTFDDSAAAAQEYAEET-----------GATFIPPFDDP---DVIAGQGTVAVEI 170
Query: 282 RKQAMEKWGGKPDVLLACVGSGSNALGL---FHEFINDEDVRLIGVEAAG 328
+Q + G PD + VG G G+ E ++IGVE AG
Sbjct: 171 LEQLEK--EGSPDYVFVPVGGGGLISGVTTYLKER--SPKTKIIGVEPAG 216
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.
Length = 331
Score = 63.7 bits (156), Expect = 3e-11
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 116 RDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVG-----AHKINNAIGQAMIA 170
+ G TPL RL+ GP+IY+KR+DL + K+ + A+
Sbjct: 9 LELAGLPTPLEPLPRLSAAL------GPDIYIKRDDLTGLALGGNKTRKLEFLLADAL-- 60
Query: 171 KRMGRKSIVAATGAGQ--HGVATAAACAKLALDCTVFM-----GTADMEKQSSKVLLMKL 223
G +++ A GA Q H TAAA AKL L C + + A+ + VLL L
Sbjct: 61 -AQGADTLITA-GAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDL 118
Query: 224 LGAQVKAVDG 233
GA++ V
Sbjct: 119 FGAEIHVVPA 128
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase. This model represents
threonine dehydratase, the first step in the pathway
converting threonine into isoleucine. At least two other
clades of biosynthetic threonine dehydratases have been
charcterized (TIGR01124 and TIGR01127). Those sequences
described by this model are exclusively found in species
containg the rest of the isoleucine pathway and which
are generally lacking in members of the those other two
clades of threonine dehydratases. Members of this clade
are also often gene clustered with other elements of the
isoleucine pathway [Amino acid biosynthesis, Pyruvate
family].
Length = 409
Score = 64.0 bits (156), Expect = 3e-11
Identities = 67/233 (28%), Positives = 93/233 (39%), Gaps = 33/233 (14%)
Query: 119 VGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSI 178
V TPL ERL++ Y G IYLKREDL V ++KI A
Sbjct: 13 VVPHTPLQLNERLSEKY------GANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKG 66
Query: 179 VAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ---VKAVDGCF 235
V AG H A AC L + TVFM +++ +V K+ G + + V F
Sbjct: 67 VVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRV---KIFGGEFIEIILVGDTF 123
Query: 236 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDV 295
+ ++ A ++E GT + P P ++ E Q + E Q E KPD
Sbjct: 124 DQCAAAARE----HVEDH---GGTFIPPFDDPRII-EGQGTVAAEILDQLPE----KPDY 171
Query: 296 LLACVGSGSNALGL---FHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEV 345
++ VG G GL + IGVE G + A+L GEV
Sbjct: 172 VVVPVGGGGLISGLTTYLAGTSPKTKI--IGVEPEG----APSMKASLEAGEV 218
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional.
Length = 317
Score = 61.2 bits (149), Expect = 2e-10
Identities = 52/190 (27%), Positives = 73/190 (38%), Gaps = 23/190 (12%)
Query: 114 ALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRM 173
LR V R TPL + L+ H G E+YLK E L H G+ K A + +
Sbjct: 13 RLRPQV-RVTPLEHSPLLSQH------TGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEA 65
Query: 174 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233
R+ V +G HG A A + TV+ + + K+ ++ LGA+V+ G
Sbjct: 66 QRQQGVITASSGNHGQGVALAAKLAGIPVTVYAPE---QASAIKLDAIRALGAEVRLYGG 122
Query: 234 CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKP 293
A A R K Y + P+ P V Q IG E +Q
Sbjct: 123 DALNAELAA-RRAAEQQGKVY------ISPYNDP-QVIAGQGTIGMELVEQQ-----PDL 169
Query: 294 DVLLACVGSG 303
D + VG G
Sbjct: 170 DAVFVAVGGG 179
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine. Deficiency of CBS
leads to homocystinuria, an inherited disease of sulfur
metabolism characterized by increased levels of the
toxic metabolite homocysteine. Cysteine synthase on the
other hand catalyzes the last step of cysteine
biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in hyperthermophilic
archaea which produces L-cysteine from sulfide and the
more thermostable O-phospho-L-serine.
Length = 291
Score = 60.6 bits (148), Expect = 2e-10
Identities = 60/230 (26%), Positives = 87/230 (37%), Gaps = 41/230 (17%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMI--AKRMGRKS--- 177
TPL RL+ G G EIY K E N G+ K I MI A++ G
Sbjct: 3 TPLVRLNRLS------PGTGAEIYAKLEFFNPGGSVKDR--IALYMIEDAEKRGLLKPGT 54
Query: 178 -IVAATGAGQHGVATAAACAKLALDCTVFM-GTADMEKQSSKVLLMKLLGAQVKAVDGCF 235
I+ T +G G+ A A + M T EK+ L++ LGA+V
Sbjct: 55 TIIEPT-SGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRK----LLRALGAEVILTPEAE 109
Query: 236 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKE-----TRKQAMEKWG 290
+ AI L P + +F++ E T + E+
Sbjct: 110 ADGMKGAIAK-ARELAAE----------TPNAFWLNQFENPANPEAHYETTAPEIWEQLD 158
Query: 291 GKPDVLLACVGSGSNALGL---FHEFINDEDVRLIGVEAAGFGLDSGKHA 337
GK D +A VG+G G+ E + +VR++GV+ G L SG
Sbjct: 159 GKVDAFVAGVGTGGTITGVARYLKE--KNPNVRIVGVDPVGSVLFSGGPP 206
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 56.8 bits (138), Expect = 4e-09
Identities = 65/244 (26%), Positives = 92/244 (37%), Gaps = 64/244 (26%)
Query: 117 DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMI--AKRMG 174
D +G TPL RL+ G G EIY K E N G+ K + I MI A++ G
Sbjct: 7 DLIGN-TPLVRLNRLSP------GTGVEIYAKLESFNPGGSVK--DRIALYMIEDAEKRG 57
Query: 175 R----KSIVAATGAGQHGVATAAACAKLALDCTVFM-GTADMEKQSSKVLLMKLLGAQVK 229
+IV AT +G G+A A A + M T E++ L++ LGA+V
Sbjct: 58 LLKPGGTIVEAT-SGNTGIALAMVAAAKGYRLIIVMPETMSQERRK----LLRALGAEVI 112
Query: 230 AVD---GCFKEASSEA------IRNWV---------GNLEKSYYLTGTVVGPHPCPIMVR 271
G K A A I + N E Y TG P + +
Sbjct: 113 LTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTG--------PEIWQ 164
Query: 272 EFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEF-INDEDVRLIGVEAAGFG 330
+ GK D +A VG+G G+ + +VR++ V+ G
Sbjct: 165 QT----------------DGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSV 208
Query: 331 LDSG 334
L SG
Sbjct: 209 LLSG 212
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 53.5 bits (129), Expect = 7e-08
Identities = 58/216 (26%), Positives = 87/216 (40%), Gaps = 28/216 (12%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMI--AKRMGRKSIVA 180
TPLY A L +Y+K N G+ K + ++ AK +G K+I+
Sbjct: 77 TPLYKAPALA---APLGVLNDNLYVKELGHNPTGSFK--DRGMTVLVSLAKELGAKTILC 131
Query: 181 ATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASS 240
A+ +G G + AA A+ L V + K+ M LGA V AVDG F +A
Sbjct: 132 AS-SGNTGASAAAYAARAGLKVFVLYPKGKVSPG--KLAQMLTLGAHVIAVDGNFDDAQE 188
Query: 241 EAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACV 300
N E ++ +P + E Q E +Q K PD ++ V
Sbjct: 189 LVKE--AANREGLLSAVNSI---NPYRL---EGQKTYAFEIAEQLGWKA---PDHVVVPV 237
Query: 301 GSGSNALGL---FHEFINDEDV----RLIGVEAAGF 329
G+G N L + F E + + + GV+A GF
Sbjct: 238 GNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGF 273
>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long
form. This model describes a form of threonine
ammonia-lyase, a pyridoxal-phosphate dependent enzyme,
with two copies of the threonine dehydratase C-terminal
domain (pfam00585). Members with known function
participate in isoleucine biosynthesis and are inhibited
by isoleucine. Alternate name: threonine deaminase,
threonine dehydratase. Forms scoring between the trusted
and noise cutoff tend to branch with this subgroup of
threonine ammonia-lyase phylogenetically but have only a
single copy of the C-terminal domain [Amino acid
biosynthesis, Pyruvate family].
Length = 499
Score = 50.5 bits (121), Expect = 7e-07
Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 34/231 (14%)
Query: 119 VGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQ-AMIAKRMGRKS 177
+ETPL A +L++ N I +KREDL V + K+ A + A ++ +
Sbjct: 14 AAQETPLQKAAKLSERLGNR------ILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARG 67
Query: 178 IVAATGAGQHGVATAAACAKLALDCTVFM--GTADMEKQSSKVLLMKLLGAQVKAVDGCF 235
++AA+ AG H A + A+L L + M T D+ KV ++ G +V F
Sbjct: 68 VIAAS-AGNHAQGVAFSAARLGLKALIVMPETTPDI-----KVDAVRGFGGEVVLHGANF 121
Query: 236 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDV 295
+A ++AI L + L T + P P +V Q + E +Q D
Sbjct: 122 DDAKAKAIE-----LSQEKGL--TFIHPFDDP-LVIAGQGTLALEILRQV----ANPLDA 169
Query: 296 LLACVGSGSNALGLFHEFIND--EDVRLIGVEAAGFGLDSGKHAATLAKGE 344
+ VG G A G+ I ++++IGVE DS L GE
Sbjct: 170 VFVPVGGGGLAAGV-AALIKQLMPEIKVIGVEPT----DSDCMKQALDAGE 215
>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed.
Length = 504
Score = 50.5 bits (122), Expect = 8e-07
Identities = 67/240 (27%), Positives = 98/240 (40%), Gaps = 52/240 (21%)
Query: 119 VGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIA------KR 172
V +ETPL A +L+ N+ + LKREDL V + K+ A +A
Sbjct: 17 VAQETPLEKAPKLSARLGNQ------VLLKREDLQPVFSFKLRGAY--NKMAQLTEEQLA 68
Query: 173 MGRKSIVAATGAGQH--GVATAAACAKLALDCTVFM--GTADMEKQSSKVLLMKLLGAQV 228
G ++ A+ AG H GVA +A A+L + + M T D+ KV ++ G +V
Sbjct: 69 RG---VITAS-AGNHAQGVALSA--ARLGIKAVIVMPVTTPDI-----KVDAVRAFGGEV 117
Query: 229 KAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGP--HPCPIMVREFQSIIGKETRKQAM 286
F EA + AI L + L T + P P V Q I E +Q
Sbjct: 118 VLHGDSFDEAYAHAIE-----LAEEEGL--TFIHPFDDP---DVIAGQGTIAMEILQQ-- 165
Query: 287 EKWGGKPDVLLACVGSGSNALGL--FHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 344
D + VG G G+ + + + E +++IGVE DS A L GE
Sbjct: 166 --HPHPLDAVFVPVGGGGLIAGVAAYIKQLRPE-IKVIGVEPE----DSACLKAALEAGE 218
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes,
D-cysteine desulfhydrase family. This model represents
a family of pyridoxal phosphate-dependent enzymes
closely related to (and often designated as putative
examples of) 1-aminocyclopropane-1-carboxylate
deaminase. It appears that members of this family
include both D-cysteine desulfhydrase (EC 4.4.1.15) and
1-aminocyclopropane-1-carboxylate deaminase (EC
3.5.99.7).
Length = 318
Score = 49.8 bits (119), Expect = 8e-07
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 117 DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHV--GAHKINNAIGQAMIAKRMG 174
+ +G TP+ + RL+D+ G EIY+KR+DL + G +KI A R G
Sbjct: 2 ELIGAPTPIQYLPRLSDYL------GREIYIKRDDLTGLAMGGNKIRKLEFLLADALRKG 55
Query: 175 RKSIVAATGAGQ--HGVATAAACAKLALDCTVFM-----GTADMEKQSSKVLLMKLLGAQ 227
+++ A GA Q H ATAA AKL L C + + TA+ + +LL L GA+
Sbjct: 56 ADTVITA-GAIQSNHARATAAVAAKLGLHCVLLLRNPIGTTAENYLLNGNLLLDDLFGAE 114
Query: 228 VKAVDGCFKEASSE 241
+ E ++
Sbjct: 115 TRIES---CEEYTD 125
>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate
(PLP)-dependent enzyme which catalyzes the conversion of
L- , D-serine, or L-threonine to pyruvate/ketobutyrate
and ammonia.
Length = 316
Score = 49.6 bits (119), Expect = 9e-07
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 41/215 (19%)
Query: 131 LTDHYRNEKGEGPEIYLKREDLNHVGAHK---INNAIGQAMIAKRMGRKSIVAATGAGQH 187
L + K G ++LK E+L G+ K I + ++ +V ++G G
Sbjct: 4 LIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSG-GNA 62
Query: 188 GVATAAACAKLALDCTVFMGTADMEKQSSKVLL---MKLLGAQVKAVDGCFKEASSEAIR 244
G+A A A KL + CT+ + +S+K + ++ GA V + EA +
Sbjct: 63 GLAAAYAARKLGVPCTIVV------PESTKPRVVEKLRDEGATVVVHGKVWWEADN---- 112
Query: 245 NWVGNLEKSYYLTGTVVGPHPCPIMVREFQ---------SIIGKETRKQAMEKWGGKPDV 295
YL + P P+ V F S++ E +Q + K D
Sbjct: 113 ----------YLREELAENDPGPVYVHPFDDPLIWEGHSSMV-DEIAQQLQSQ--EKVDA 159
Query: 296 LLACVGSGSNALGLFH--EFINDEDVRLIGVEAAG 328
++ VG G G+ E D+ ++ VE G
Sbjct: 160 IVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEG 194
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional.
Length = 310
Score = 49.2 bits (118), Expect = 1e-06
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 127 FAERLTDHYR-------NEKGEGP-EIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSI 178
A+R+ H R + G GP ++LK E L H G+ K A ++A + +
Sbjct: 13 AAQRIAPHIRRTPVLEADGAGFGPAPVWLKLEHLQHTGSFKARGAF-NRLLAAPVPAAGV 71
Query: 179 VAATGAGQHGVATAAACAKLALDCTVFM-GTADMEKQSSKVLLMKLLGAQVKAVDGCFKE 237
VAA+G G G+A A A A L + TVF+ TA +KV ++ LGA+V V + +
Sbjct: 72 VAASG-GNAGLAVAYAAAALGVPATVFVPETA----PPAKVARLRALGAEVVVVGAEYAD 126
Query: 238 ASSEAIR 244
A A
Sbjct: 127 ALEAAQA 133
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form. A
form of threonine dehydratase with two copies of the
C-terminal domain pfam00585 is described by TIGR01124.
This model describes a phylogenetically distinct form
with a single copy of pfam00585. This form branches with
the catabolic threonine dehydratase of E. coli; many
members are designated as catabolic for this reason.
However, the catabolic form lacks any pfam00585 domain.
Many members of this model are found in species with
other Ile biosynthetic enzymes [Amino acid biosynthesis,
Pyruvate family].
Length = 380
Score = 49.0 bits (117), Expect = 2e-06
Identities = 66/251 (26%), Positives = 97/251 (38%), Gaps = 49/251 (19%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAAT 182
TPL ++ L+D G E+YLK E+L G+ KI A+ + R+ V A
Sbjct: 1 TPLIYSTTLSDIT------GSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAA 54
Query: 183 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV----KAVDGCFKEA 238
AG H A A K + + M + SKV K GA+V D + A
Sbjct: 55 SAGNHAQGVAYAAKKFGIKAVIVMPES---APPSKVKATKSYGAEVILHGDDYDEAYAFA 111
Query: 239 SS---EAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDV 295
+S E R +V + + + G Q IG E ME D
Sbjct: 112 TSLAEEEGRVFVHPFDDEFVMAG---------------QGTIGLE----IMED-IPDVDT 151
Query: 296 LLACVGSGS--NALGLFHEFINDEDVRLIGVEAAGF-----GLDSGK-----HAATLAKG 343
++ VG G + + + IN +V++IGVEA G L GK T+A G
Sbjct: 152 VIVPVGGGGLISGVASAAKQINP-NVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADG 210
Query: 344 EVGVYHGAMSY 354
G +++
Sbjct: 211 IAVKKPGDLTF 221
>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed.
Length = 521
Score = 49.0 bits (117), Expect = 2e-06
Identities = 66/230 (28%), Positives = 100/230 (43%), Gaps = 32/230 (13%)
Query: 119 VGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQA--MIAKRMGRK 176
V RETPL A L+ N+ + LKREDL V + KI A + + A+++ R
Sbjct: 34 VARETPLQRAPNLSARLGNQ------VLLKREDLQPVFSFKIRGAYNKMARLPAEQLARG 87
Query: 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFK 236
I A+ G GVA AA A+L + + M KV ++ G +V F
Sbjct: 88 VITASAGNHAQGVALAA--ARLGVKAVIVMPRT---TPQLKVDGVRAHGGEVVLHGESFP 142
Query: 237 EASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVL 296
+A + A++ L + L T V P P ++ Q + E +Q G D +
Sbjct: 143 DALAHALK-----LAEEEGL--TFVPPFDDPDVIAG-QGTVAMEILRQHP----GPLDAI 190
Query: 297 LACVGSGSNALGL--FHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 344
VG G G+ + +++ E +++IGVE DS A LA GE
Sbjct: 191 FVPVGGGGLIAGIAAYVKYVRPE-IKVIGVEPD----DSNCLQAALAAGE 235
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional.
Length = 404
Score = 47.4 bits (114), Expect = 6e-06
Identities = 72/259 (27%), Positives = 102/259 (39%), Gaps = 70/259 (27%)
Query: 109 EELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKIN---NAIG 165
EE L+ V R TPL ++ L++ E +YLK E+L G+ KI N I
Sbjct: 10 EEARERLKGVV-RRTPLEYSRTLSELTGAE------VYLKCENLQRTGSFKIRGAYNKIA 62
Query: 166 QAMIAKRMGRKSIVAATGAGQH--GVATAAACAKLALDCTVFM--GTADMEKQSSKVLLM 221
+R + +VAA+ AG H GVA AA+ L + T+ M SKV
Sbjct: 63 SLSEEER--ARGVVAAS-AGNHAQGVAYAAS--LLGIKATIVMPETAP-----LSKVKAT 112
Query: 222 KLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTV-VGP--HPCPIMVREFQSIIG 278
+ GA+V + EA ++A L + TG V P P V Q IG
Sbjct: 113 RSYGAEVVLHGDVYDEALAKAQE-----LAEE---TGATFVHPFDDP---DVIAGQGTIG 161
Query: 279 KETRKQAMEKWGGKPDV--LLACVGSG------SNALGLFHEFINDEDVRLIGVEAAGFG 330
E + PDV ++ +G G + A+ +VR+IGV+A G
Sbjct: 162 LEILED-------LPDVDTVVVPIGGGGLISGVATAVKALR-----PEVRVIGVQAEG-- 207
Query: 331 LDSGKHAAT----LAKGEV 345
A LA G
Sbjct: 208 ------APAMPESLAAGRP 220
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 47.2 bits (112), Expect = 9e-06
Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 41/242 (16%)
Query: 111 LSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIA 170
LS + D V E+PL A++L++ G ++ LKREDL V + K+ A M+A
Sbjct: 99 LSAKVYD-VAIESPLQLAKKLSERL------GVKVLLKREDLQPVFSFKLRGAYN--MMA 149
Query: 171 K--RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFM--GTADMEKQSSKVLLMKLLGA 226
K + V + AG H A + +L D + M T +++ QS ++ LGA
Sbjct: 150 KLPKEQLDKGVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQS-----VERLGA 204
Query: 227 QVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGP--HPCPIMVREFQSIIGKETRKQ 284
V V + EA + A +++ T + P HP I Q +G E +Q
Sbjct: 205 TVVLVGDSYDEAQAYA-------KQRALEEGRTFIPPFDHPDVIA---GQGTVGMEIVRQ 254
Query: 285 AMEKWGGKPDVLLACVGSGSNALGL--FHEFINDEDVRLIGVEAAGFGLDSGKHAATLAK 342
G + VG G G+ + + + E V++IGVE + D+ A +L
Sbjct: 255 HQ----GPLHAIFVPVGGGGLIAGIAAYVKRVRPE-VKIIGVEPS----DANAMALSLHH 305
Query: 343 GE 344
GE
Sbjct: 306 GE 307
>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional.
Length = 322
Score = 46.1 bits (110), Expect = 1e-05
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKI---NNAIGQAMIAKRMGRKS 177
R TPL + L+ G ++LK E L G+ K+ NA+ + A+ R
Sbjct: 18 RRTPLVASASLSARA------GVPVWLKLETLQPTGSFKLRGATNALLS-LSAQERARGV 70
Query: 178 IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKE 237
+ A+TG HG A A A L + T+ M +KV ++ LGA+V+ V +
Sbjct: 71 VTASTG--NHGRALAYAARALGIRATICMSRLVPA---NKVDAIRALGAEVRIVGRSQDD 125
Query: 238 ASSEAIR 244
A +E R
Sbjct: 126 AQAEVER 132
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional.
Length = 403
Score = 46.2 bits (110), Expect = 1e-05
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQ-AMIAKRMGRKSIVAA 181
TP +A L+ K G E+YLK+E+L GA+KI A + A +++ + ++AA
Sbjct: 21 TPFAYAPFLS------KISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGVIAA 74
Query: 182 TGAGQH--GVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228
+ AG H GVA +A K + + M A KV K LGA+V
Sbjct: 75 S-AGNHAQGVAISA--KKFGIKAVIVMPEA---TPLLKVSGTKALGAEV 117
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 45.5 bits (108), Expect = 2e-05
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 25/193 (12%)
Query: 145 IYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTV 204
IYLK E N G K A A R+G I T G +G + A L +
Sbjct: 33 IYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGITVGT-CGNYGASIAYFARLYGLKAVI 91
Query: 205 FMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLT--GTVVG 262
F+ + +S+V M+ GA++ VDG ++EA + + E Y G+V
Sbjct: 92 FIPRS---YSNSRVKEMEKYGAEIIYVDGKYEEAVERSRKF---AKENGIYDANPGSVN- 144
Query: 263 PHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDV--- 319
++ E S I E + G PD + VG+G+ G++H F D
Sbjct: 145 ----SVVDIEAYSAIAYEIYEAL----GDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKT 196
Query: 320 ----RLIGVEAAG 328
R+IGV +G
Sbjct: 197 SRMPRMIGVSTSG 209
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 42.0 bits (99), Expect = 3e-04
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 23/117 (19%)
Query: 119 VGRETPL----YFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKI---NNAIGQAMIAK 171
R+TPL Y +ER KGE I+LK E++ G+ KI N + A+
Sbjct: 24 RIRKTPLPRSNYLSERC-------KGE---IFLKLENMQRTGSFKIRGAFNKLSSLTDAE 73
Query: 172 RMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQV 228
+ RK +VA + AG H A +CA L +D V M SKV GA+V
Sbjct: 74 K--RKGVVACS-AGNHAQGVALSCALLGIDGKVVM---PKGAPKSKVAATCGYGAEV 124
>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional.
Length = 338
Score = 39.8 bits (93), Expect = 0.002
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 142 GPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGR--KSIVAATGAGQHGVATAAACAKLA 199
G EI+ K E L GA K+ + + K G+ IVA + G HG A A A
Sbjct: 37 GHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYS-TGNHGQAVAYASKLFG 95
Query: 200 LDCTVFM 206
+ +++
Sbjct: 96 IKTRIYL 102
>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated.
Length = 442
Score = 39.8 bits (93), Expect = 0.002
Identities = 61/279 (21%), Positives = 99/279 (35%), Gaps = 60/279 (21%)
Query: 74 KFGRFGGKFVPETLITCLSLLEAEFNFVLQDT-----------KFQEELSTALRDYVGRE 122
K GR ++P I C LLE +++ D +++E L + E
Sbjct: 6 KCGREYNSYIPPFCI-CGELLEIIYDYSSVDVRKWKNRDPGVWRYKELLPQVKKIISLGE 64
Query: 123 --TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVA 180
TPL A R + G +Y+K E N G+ + A +
Sbjct: 65 GGTPLIRA-------RISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAANGFIV 117
Query: 181 ATGAGQHGVATAAACAKLALDCTVFMGT-ADMEKQSSKVLLMKLLGAQV----KAVDGCF 235
A+ G + AA A+ + V + D K ++ M GA++ ++VD
Sbjct: 118 ASD-GNAAASVAAYSARAGKEAFVVVPRKVDKGK----LIQMIAFGAKIIRYGESVDEAI 172
Query: 236 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ-AMEKWGG-KP 293
+ A A L Y +T +IIG E +K A E W P
Sbjct: 173 EYAEELA------RLNGLYNVTPE--------------YNIIGLEGQKTIAFELWEEINP 212
Query: 294 DVLLACVGSGSNALGLFHEF-------INDEDVRLIGVE 325
++ GSGS ++ F + +E +LI V+
Sbjct: 213 THVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQ 251
>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB. Members
of this protein family are EutB, a predicted
arylmalonate decarboxylase found in a conserved ectoine
utilization operon of species that include Sinorhizobium
meliloti 1021 (where it is known to be induced by
ectoine), Mesorhizobium loti, Silicibacter pomeroyi,
Agrobacterium tumefaciens, and Pseudomonas putida.
Members of this family resemble threonine dehydratases.
Length = 317
Score = 39.1 bits (91), Expect = 0.003
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
Query: 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVA 180
ETPL + L++ G ++LK E G+ K+ A + R + V
Sbjct: 18 EETPLVESPSLSELC------GVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRAAGVV 71
Query: 181 ATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASS 240
A G HG A A A A+ + T+ M +KV ++ LGA+V+ V +A
Sbjct: 72 AASTGNHGRALAYAAAEEGVRATICMSEL---VPQNKVDEIRRLGAEVRIVGRSQDDAQE 128
Query: 241 EAIR 244
E R
Sbjct: 129 EVER 132
>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional.
Length = 349
Score = 37.7 bits (87), Expect = 0.007
Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 32/214 (14%)
Query: 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMG 174
LR Y+ TPL++AER ++LK E+L G++K+ A+ + G
Sbjct: 33 LRRYL-SPTPLHYAERFG------------VWLKLENLQRTGSYKVRGALNALLAGLERG 79
Query: 175 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234
+ V AG H A + +L + M +K+ + GA V+
Sbjct: 80 DERPVICASAGNHAQGVAWSAYRLGVQAITVMPHG---APQTKIAGVAHWGATVRQHGNS 136
Query: 235 FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPD 294
+ EA + A N Y P V Q +G E A PD
Sbjct: 137 YDEAYAFARELADQN---GYRFLSAFDDPD-----VIAGQGTVGIELAAHA-------PD 181
Query: 295 VLLACVGSGSNALGLFHEFINDEDVRLIGVEAAG 328
V++ +G G A G+ + + VR++G + G
Sbjct: 182 VVIVPIGGGGLASGVALA-LKSQGVRVVGAQVEG 214
>gnl|CDD|236065 PRK07591, PRK07591, threonine synthase; Validated.
Length = 421
Score = 37.6 bits (88), Expect = 0.008
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 180 AATG--AGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233
A+TG A + AA A+ LD VF+ AD+E K++ + G + AVDG
Sbjct: 143 ASTGNLAN----SVAAHAARAGLDSCVFI-PADLEAG--KIVGTLVYGPTLVAVDG 191
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated.
Length = 394
Score = 36.9 bits (86), Expect = 0.014
Identities = 63/226 (27%), Positives = 94/226 (41%), Gaps = 52/226 (23%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAM---IAKRMGRKSIV 179
TPL RL + +++K E LN G+ K A G A+ AK +G K +
Sbjct: 80 TPLLPLPRLG-----KALGIGRLWVKDEGLNPTGSFK---ARGLAVGVSRAKELGVKHLA 131
Query: 180 AATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEAS 239
T G G A AA A+ + T+FM + L L GA++ VDG +A
Sbjct: 132 MPT-NGNAGAAWAAYAARAGIRATIFM---PADAPEITRLECALAGAELYLVDGLISDAG 187
Query: 240 ---SEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAM-----EKWGG 291
+EA+ E ++ T ++E I GK+T M E+ G
Sbjct: 188 KIVAEAVA------EYGWFDVST----------LKEPYRIEGKKT----MGLELAEQLGW 227
Query: 292 K-PDVLLACVGSGSNALGL---FHE-----FINDEDVRLIGVEAAG 328
+ PDV+L G G +G+ F E +I + RL+ V+A G
Sbjct: 228 RLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEG 273
>gnl|CDD|172537 PRK14045, PRK14045, 1-aminocyclopropane-1-carboxylate deaminase;
Provisional.
Length = 329
Score = 35.3 bits (81), Expect = 0.046
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 32/222 (14%)
Query: 122 ETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVG-----AHKINNAIGQAMIAKRMGRK 176
ETP+ + ++ + G ++Y+KR+DL +G K+ +G A+
Sbjct: 21 ETPIQYLPNIS------RELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRG----A 70
Query: 177 SIVAATGA--GQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234
+V GA H T A KL LD + + E+ LL K++G + + +
Sbjct: 71 DVVITVGAVHSNHAFVTGLAAKKLGLDAVLVL--RGKEELKGNYLLDKIMGIETRVYEAK 128
Query: 235 ----FKEASSEAIRNWVGNLEKSYYLTGTVVGP-HPCPIMVREFQSIIGKETRKQAMEKW 289
+ + E G K Y ++ P P+ + +G E Q +K
Sbjct: 129 DSFELMKYAEEVAEELKGEGRKPY-----IIPPGGASPVGTLGYVRAVG-EIATQV-KKL 181
Query: 290 GGKPDVLLACVGSGSNALGL-FHEFINDEDVRLIGVEAAGFG 330
G + D ++ VGSG GL I + + R++G+ FG
Sbjct: 182 GVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFG 223
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional.
Length = 330
Score = 34.5 bits (80), Expect = 0.072
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 142 GPEIYLKREDLNHVGAHKINNAIGQAMI--AKRMGR----KSIVAATGAGQHGVATAAAC 195
G EI K E LN G+ K + +I A++ G +IV T AG G+ A
Sbjct: 27 GCEILGKAEFLNPGGSVK--DRAALNIIWDAEKRGLLKPGGTIVEGT-AGNTGIGLALVA 83
Query: 196 AKLALDCTVFMGTADMEKQSS-KVLLMKLLGAQVKAVDGC 234
A + M E QS K L++ LGA++ V
Sbjct: 84 AARGYKTVIVMP----ETQSQEKKDLLRALGAELVLVPAA 119
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 34.2 bits (78), Expect = 0.083
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 27/169 (15%)
Query: 174 GRKSIVAATGAGQHGVATAAACAKLALDCTVFM-GTADMEKQSSKVLLMKLLGAQVKAVD 232
G+ +++ AT G G+ A A + M T +E++ ++++ LGA+V D
Sbjct: 68 GKSTLIEATA-GNTGIGLACIGAARGYKVILVMPSTMSLERR----IILRALGAEVHLTD 122
Query: 233 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKET--RKQAMEKW- 289
S ++ G LEK ++ P + ++F++ E R E W
Sbjct: 123 ------QSIGLK---GMLEK----AEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWR 169
Query: 290 --GGKPDVLLACVGSGSNALGLFHEFINDE--DVRLIGVEAAGFGLDSG 334
GK D+L+A VG+G A G+ +F+ ++ D+++ VE + SG
Sbjct: 170 DSAGKVDILVAGVGTGGTATGV-GKFLKEKNKDIKVCVVEPVESAVLSG 217
>gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated.
Length = 347
Score = 33.6 bits (77), Expect = 0.15
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 34/127 (26%)
Query: 217 KVLLMKLLGAQVKAVDGCFKEASSEAIR-------NWVGNLEKSYYLTGTVVGPHPCPIM 269
K+ L+ LGA++ V+G E EA++ +V + Y+L GT
Sbjct: 142 KISLLSRLGAELHFVEGDRMEVHEEAVKFSKRNNIPYVSHWLNPYFLEGT---------- 191
Query: 270 VREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLF------HEFINDEDV-RLI 322
I E +Q G PD VGSG+ LG++ HE + +L+
Sbjct: 192 -----KTIAYEIYEQI-----GVPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLV 241
Query: 323 GVEAAGF 329
V+A G+
Sbjct: 242 AVQAEGY 248
>gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional.
Length = 399
Score = 33.3 bits (77), Expect = 0.19
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 146 YLKRE---DLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDC 202
L + D++ + ++ + +++G + AT G HG A A +L
Sbjct: 88 LLAEKLGLDISELSFEELT----SGEVREKLGDITFATAT-DGNHGRGVAWAAQQLGQKA 142
Query: 203 TVFMGTADMEKQSSKVLL--MKLLGAQVKAVDG----CFKEASSEA-IRNWV 247
++ M K SS+ + ++ LGA+ DG + A+ EA WV
Sbjct: 143 VIY-----MPKGSSEERVDAIRALGAECIITDGNYDDSVRLAAQEAQENGWV 189
>gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase.
This pyridoxal phosphate-dependent enzyme degrades
1-aminocyclopropane-1-carboxylate, which in plants is a
precursor of the ripening hormone ethylene, to ammonia
and alpha-ketoglutarate. This model includes all members
of this family for which function has been demonstrated
experimentally, but excludes a closely related family
often annotated as putative members of this family
[Central intermediary metabolism, Other].
Length = 337
Score = 32.9 bits (75), Expect = 0.26
Identities = 51/220 (23%), Positives = 84/220 (38%), Gaps = 25/220 (11%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNH---VGAHKINNAIGQAMIAKRMGRKSIV 179
+P++ RL+ H G +Y KRED N G +K A+ G ++V
Sbjct: 15 SPIHPLPRLSQHL----GGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTTLV 70
Query: 180 AATG-AGQHGVATAAACAKLALDCTVFMG-----TADMEKQSSKVLLMKLLGAQVKAVDG 233
+ G AA A L + C + + + + + L +++GA V+
Sbjct: 71 SIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPD 130
Query: 234 CF----KEASSEAIRNWVGNLEKSYYL-TGTVVGPHPCPIMVREFQSIIGKETRKQAMEK 288
F + + A+ G K Y + G P V E R+Q E
Sbjct: 131 GFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLGGLGFVG-----FAFEVREQEGE- 184
Query: 289 WGGKPDVLLACVGSGSNALGLFHEFINDEDV-RLIGVEAA 327
G K D ++ C +GS G+ F D R+IG++A+
Sbjct: 185 LGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDAS 224
>gnl|CDD|236013 PRK07409, PRK07409, threonine synthase; Validated.
Length = 353
Score = 32.5 bits (75), Expect = 0.32
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 29/126 (23%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHK---INNAIGQAMIAKRMGRKSIV 179
TPL A L + G E+Y+K E LN G+ K + A+ + AK G K+++
Sbjct: 32 TPLIPAPNL------SELLGVEVYVKYEGLNPTGSFKDRGMTMAVTK---AKEEGAKAVI 82
Query: 180 -AATGAGQHGVATAAACAKLA-LDCTVFMGTADMEKQSSKVLLMKL-----LGAQVKAVD 232
A+TG + A+AAA A A L V + K+ L KL GA++ +D
Sbjct: 83 CASTG---NTSASAAAYAARAGLKAFVLI-------PEGKIALGKLAQAVMYGAEIIQID 132
Query: 233 GCFKEA 238
G F +A
Sbjct: 133 GNFDDA 138
>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated.
Length = 351
Score = 31.9 bits (72), Expect = 0.49
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 36/213 (16%)
Query: 142 GPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALD 201
G +Y K E LN G+ K + AK G ++++ A+ G A AA + L
Sbjct: 42 GVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAEAVICAS-TGNTSAAAAAYATRAGLK 100
Query: 202 CTVFM--GTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGT 259
+ + G + K + V+ GA + ++ G F EA +++R + E +
Sbjct: 101 AYIVIPEGKVALGKLAQAVMY----GADIISIQGNFDEAL-KSVRE-LAETEAVTLVNS- 153
Query: 260 VVGPHPCPIMVREFQSIIGKETRK-QAMEKWGGKPDVLLACVGSGSN------ALGLFHE 312
V P+ + G++T + E+ G PDVL VG+ N ++E
Sbjct: 154 -VNPY----------RLEGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNE 202
Query: 313 FINDEDVRLIGVEAAGFGLDSGKHAATLAKGEV 345
R+ G EA G AA + +G+
Sbjct: 203 AKASGLPRMHGFEAEG--------AAAIVQGKP 227
>gnl|CDD|183494 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase;
Provisional.
Length = 337
Score = 31.2 bits (71), Expect = 0.84
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 47/150 (31%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNH---VGAHK-------INNAIGQAMIAKR 172
TP++ +RL+ H G E+Y KRED N G +K + +A+ Q
Sbjct: 16 TPIHPLKRLSAHL----GGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQ------ 65
Query: 173 MGRKSIVAATGA-GQHGVATAAACAKLALDCTVFMGTADMEKQSSKV------------- 218
G ++V+ G H AA A L + C + Q + V
Sbjct: 66 -GADTLVSIGGVQSNHTRQVAAVAAHLGMKCVLV--------QENWVNYEDAVYDRVGNI 116
Query: 219 LLMKLLGAQVKAVDGCF----KEASSEAIR 244
LL +++GA V+ V F +++ +A+
Sbjct: 117 LLSRIMGADVRLVPDGFDIGIRKSWEDALE 146
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 30.3 bits (68), Expect = 1.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 165 GQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALD 201
G +I + ++ ATG G HG A A +L D
Sbjct: 326 GLPVIGRAAPLPNLYVATGHGGHGFTLAPALGRLLAD 362
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 30.1 bits (68), Expect = 2.1
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 137 NEKGEGPEI-YLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAAC 195
+GE I +LKR +++V K + + K +K VA G+G G++ A
Sbjct: 247 GHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKK--NKK--VAIVGSGPAGLSAAYFL 302
Query: 196 AKLALDCTVF 205
A + + TV+
Sbjct: 303 ATMGYEVTVY 312
>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau;
Validated.
Length = 451
Score = 29.4 bits (66), Expect = 3.4
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 76 GRFGGKFVPETLITCLSLLEAEFNFVL----QDTKFQEELSTALRDYVGRETPLYFAERL 131
G F P+++ L LL + + L + + L P +F L
Sbjct: 228 GLFPKSLDPDSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDL 287
Query: 132 TDHYRN 137
T +RN
Sbjct: 288 TLFFRN 293
>gnl|CDD|107350 cd06355, PBP1_FmdD_like, Periplasmic component (FmdD) of an active
transport system for short-chain amides and urea
(FmdDEF). This group includes the periplasmic component
(FmdD) of an active transport system for short-chain
amides and urea (FmdDEF), found in Methylophilus
methylotrophus, and its homologs from other bacteria.
FmdD, a type I periplasmic binding protein, is induced
by short-chain amides and urea and repressed by excess
ammonia, while FmdE and FmdF are hydrophobic
transmembrane proteins. FmdDEF is predicted to be an
ATP-dependent transporter and closely resembles the
periplasmic binding protein and the two transmembrane
proteins present in various hydrophobic amino
acid-binding transport systems.
Length = 348
Score = 29.2 bits (66), Expect = 3.9
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 256 LTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEF-- 313
L G VVG P+ +FQSII K K A KPDV+++ V SN + F +
Sbjct: 160 LGGEVVGEEYLPLGHTDFQSIINK--IKAA------KPDVVVSTVNGDSN-VAFFKQLKA 210
Query: 314 --INDEDVRLIGV-----EAAGFG 330
I V ++ E G G
Sbjct: 211 AGITASKVPVLSFSVAEEELRGIG 234
>gnl|CDD|235994 PRK07334, PRK07334, threonine dehydratase; Provisional.
Length = 403
Score = 28.3 bits (64), Expect = 7.9
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 142 GPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQH--GVATAAACAKLA 199
G E++LK E+L + K A+ + ++ R V A AG H GVA A +L
Sbjct: 37 GAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGVIAMSAGNHAQGVAYHA--QRLG 94
Query: 200 LDCTVFM 206
+ T+ M
Sbjct: 95 IPATIVM 101
>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit;
Provisional.
Length = 410
Score = 28.1 bits (63), Expect = 8.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 179 VAATGAGQHGVATAAACAKLALDCTVF 205
+A GAG GV TA A A+ TVF
Sbjct: 4 IAVIGAGITGVTTAYALAQRGYQVTVF 30
>gnl|CDD|213328 cd04519, RasGAP, Ras GTPase Activating Domain. RasGAP functions as
an enhancer of the hydrolysis of GTP that is bound to
Ras-GTPases. Proteins having a RasGAP domain include
p120GAP, IQGAP, Rab5-activating protein 6, and
Neurofibromin, among others. Although the Rho (Ras
homolog) GTPases are most closely related to members of
the Ras family, RhoGAP and RasGAP exhibit no similarity
at their amino acid sequence level. RasGTPases function
as molecular switches in a large number of signaling
pathways. They are in the on state when bound to GTP,
and in the off state when bound to GDP. The RasGAP
domain speeds up the hydrolysis of GTP in Ras-like
proteins acting as a negative regulator.
Length = 256
Score = 27.8 bits (62), Expect = 9.2
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 266 CPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN 315
P +R I+ R+ E++ +PD V LF FI
Sbjct: 146 LPPELRYVFKIL----REFLAERFPEEPDEAYQAVSG-----FLFLRFIC 186
>gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein)
reductase. This model represents 3-oxoacyl-[ACP]
reductase, also called 3-ketoacyl-acyl carrier protein
reductase, an enzyme of fatty acid biosynthesis [Fatty
acid and phospholipid metabolism, Biosynthesis].
Length = 239
Score = 27.6 bits (62), Expect = 9.2
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 151 DLNHVGAHKINNAIGQAMIAKRMGR----KSIVAATG-AGQHGVATAAA 194
D N G + A+ + MI +R GR S+V G AGQ A + A
Sbjct: 105 DTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNAGQANYAASKA 153
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 28.1 bits (63), Expect = 9.4
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 161 NNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVF 205
N I + ++ G+K VA G+G G+ A AK+ D T+F
Sbjct: 127 ENGIDLSETEEKKGKK--VAVIGSGPAGLTCAGDLAKMGYDVTIF 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,777,751
Number of extensions: 1826187
Number of successful extensions: 1781
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1694
Number of HSP's successfully gapped: 71
Length of query: 372
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 274
Effective length of database: 6,590,910
Effective search space: 1805909340
Effective search space used: 1805909340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)