RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017391
(372 letters)
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 249 bits (637), Expect = 1e-80
Identities = 161/297 (54%), Positives = 212/297 (71%), Gaps = 8/297 (2%)
Query: 75 FGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDH 134
FG FGG++VPETLI L LE + D +F +L+ L+ + GR TPLY+A+RLT+
Sbjct: 3 FGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEK 62
Query: 135 YRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAA 194
G +IYLKREDL H GAHK NNAIGQA++AK MG+ ++A TGAGQHGVATA A
Sbjct: 63 I-----GGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMA 117
Query: 195 CAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC---FKEASSEAIRNWVGNLE 251
A L + ++MG D+E+Q V MKLLGA V V+ K+A +EA+R+WV E
Sbjct: 118 GALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFE 177
Query: 252 KSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFH 311
++YL G+VVGPHP P +VR+FQS+IG+E + Q +E G PDV++ACVG GSNA+G+F+
Sbjct: 178 YTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFY 237
Query: 312 EFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHS 368
F+ND+ V+L+GVEA G GL+SGKH+A+L G+VGV+HG +SY LQDEEGQI THS
Sbjct: 238 PFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHS 294
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 245 bits (626), Expect = 6e-79
Identities = 141/306 (46%), Positives = 198/306 (64%), Gaps = 9/306 (2%)
Query: 70 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAE 129
L FG FGG +VP+ L+ L+ LE F +D +FQ + + L++Y GR T L +
Sbjct: 3 LLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQ 62
Query: 130 RLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGV 189
+T +YLKREDL H GAHK N +GQA++AKRMG+ I+A TGAGQHGV
Sbjct: 63 NITAGT------RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGV 116
Query: 190 ATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVD---GCFKEASSEAIRNW 246
A+A A A L L C ++MG D+E+QS V M+L+GA+V V K+A +EA+R+W
Sbjct: 117 ASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDW 176
Query: 247 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNA 306
G+ E ++Y+ GT GPHP P +VREFQ +IG+ET+ Q ++K G PD ++ACVG GSNA
Sbjct: 177 SGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNA 236
Query: 307 LGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGT 366
+G+F +FIND V LIGVE G G+++G+H A L G VG+Y G + ++Q +GQI +
Sbjct: 237 IGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEES 296
Query: 367 HSVGVG 372
+S+ G
Sbjct: 297 YSISAG 302
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 105 bits (263), Expect = 2e-26
Identities = 44/246 (17%), Positives = 74/246 (30%), Gaps = 21/246 (8%)
Query: 118 YVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMI---AKRMG 174
TP+ RL+ H G +Y KRED N A N + A G
Sbjct: 11 LTFGPTPIQPLARLSKHL----GGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQG 66
Query: 175 RKSIVAATGA-GQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233
++V+ G AA A L + C + + + + +++ D
Sbjct: 67 CDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADV 126
Query: 234 CFKEASS--------EAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQA 285
E V Y HP + + +
Sbjct: 127 RLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEE----VRAQ 182
Query: 286 MEKWGGKPDVLLACVGSGSNALGLFHEFIND-EDVRLIGVEAAGFGLDSGKHAATLAKGE 344
+ G K D ++ C +GS G+ F D R+IGV+A+ + + +A+
Sbjct: 183 EAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITRIARQT 242
Query: 345 VGVYHG 350
Sbjct: 243 AEKVGL 248
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 102 bits (254), Expect = 2e-25
Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 32/236 (13%)
Query: 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMG 174
+ +G TP+ + + I+LK E N G+ K A+ + A++ G
Sbjct: 4 MERLIGS-TPIVRLDSI----------DSRIFLKLEKNNPGGSVKDRPALFMILDAEKRG 52
Query: 175 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234
+ A + M + + ++K+LGA++ G
Sbjct: 53 LLKNGIVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVE--RRKVLKMLGAELVLTPGE 110
Query: 235 FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPD 294
+ LE S ++ P V Q G E +++ + D
Sbjct: 111 LGMKGAVEKA-----LEISRETGAHMLNQFENPYNVYSHQFTTGPEI----LKQMDYQID 161
Query: 295 VLLACVGSGSNALGLFHEF--INDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVY 348
+A VG+G G+ V+++ VE A + L+ G+ G +
Sbjct: 162 AFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAK--------SPVLSGGQPGKH 209
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 96.1 bits (238), Expect = 5e-23
Identities = 48/237 (20%), Positives = 75/237 (31%), Gaps = 27/237 (11%)
Query: 119 VGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSI 178
+ TPL E+L+ I +KRED V + K+ A +
Sbjct: 24 AAQVTPLQKMEKLSSRL------DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHG 77
Query: 179 VAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEA 238
V AG H A + A+L + + M TA + KV ++ G +V F E
Sbjct: 78 VITASAGNHAQGVAFSSARLGVKALIVMPTATADI---KVDAVRGFGGEVLLHGANFDE- 133
Query: 239 SSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLA 298
K+ + + I G+ T + + D +
Sbjct: 134 ------------AKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFV 181
Query: 299 CVGSGSNALGLFHEFIN-DEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSY 354
VG G A G+ +++I VEA DS A L G +
Sbjct: 182 PVGGGGLAAGVAVLIKQLMPQIKVIAVEAE----DSACLKAALDAGHPVDLPRVGLF 234
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 90.9 bits (224), Expect = 4e-21
Identities = 41/226 (18%), Positives = 72/226 (31%), Gaps = 17/226 (7%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMI---AKRMGRKSIV 179
+P+ RL+ H G +Y KRED N A N I +V
Sbjct: 16 SPISNLNRLSQHL----GSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLV 71
Query: 180 AATG-AGQHGVATAAACAKLALDCTVFM--------GTADMEKQSSKVLLMKLLGAQVKA 230
+ G AA AKL C + D+ + + L +++GA V+
Sbjct: 72 SIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRV 131
Query: 231 VDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWG 290
++ F ++ N + LE + + + + + + G
Sbjct: 132 IEDGFDIGMRKSFANALQELEDAGH-KPYPIPAGCSEHKYGGLGFVGFADEVINQEVELG 190
Query: 291 GKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKH 336
K D ++ C +GS G+ + A F + K
Sbjct: 191 IKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKE 236
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 90.7 bits (224), Expect = 5e-21
Identities = 44/217 (20%), Positives = 78/217 (35%), Gaps = 19/217 (8%)
Query: 117 DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKIN---NAIGQAMIAKRM 173
+G TP+ ++ + G E+ K E N G+ K I A +
Sbjct: 40 KKIGD-TPMVRINKIGKKF----GLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTL 94
Query: 174 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233
+ +G G+ A A A C + M + S KV +++ LGA++
Sbjct: 95 KPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVM---PEKMSSEKVDVLRALGAEIVRTPT 151
Query: 234 CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKET-RKQAMEKWGGK 292
+ S E+ L+ H + +T + +++ GK
Sbjct: 152 NARFDSPESHVGVAWRLKNEIP------NSHILDQYRNASNPLAHYDTTADEILQQCDGK 205
Query: 293 PDVLLACVGSGSNALGLFHEF-INDEDVRLIGVEAAG 328
D+L+A VG+G G+ + R+IGV+ G
Sbjct: 206 LDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEG 242
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 81.1 bits (199), Expect = 6e-18
Identities = 34/211 (16%), Positives = 62/211 (29%), Gaps = 15/211 (7%)
Query: 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMG 174
+ +G+ TP+ ++ + E+++K E LN G+ K A A+ G
Sbjct: 3 VEGAIGK-TPVVRLAKVVEPD------MAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERG 55
Query: 175 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234
+ + + + M Q S+ L + V
Sbjct: 56 ILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTD 115
Query: 235 FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPD 294
+ A + E+ + P VR G E E G+ D
Sbjct: 116 PERRMLAAREEALRLKEELGA---FMPDQFKNPANVRAHYETTGPEL----YEALEGRID 168
Query: 295 VLLACVGSGSNALGLFHEFIN-DEDVRLIGV 324
+ G+G G+ V++I V
Sbjct: 169 AFVYGSGTGGTITGVGRYLKERIPHVKVIAV 199
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 80.7 bits (198), Expect = 9e-18
Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 23/199 (11%)
Query: 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMG 174
++ + + TP+ + + + E++ K E+ +GA K A+
Sbjct: 15 IKKFANK-TPVLTSSTVNKEF------VAEVFFKCENFQKMGAFKFRGALNALSQLNEAQ 67
Query: 175 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGC 234
RK+ V +G H A A + L + + M E +KV K G QV D
Sbjct: 68 RKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPE---AKVAATKGYGGQVIMYDRY 124
Query: 235 FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPD 294
+ A + + L T++ P+ P + + G+ T + + + G D
Sbjct: 125 KDDREKMAKE-----ISEREGL--TIIPPYDHPHV------LAGQGTAAKELFEEVGPLD 171
Query: 295 VLLACVGSGSNALGLFHEF 313
L C+G G G
Sbjct: 172 ALFVCLGGGGLLSGSALAA 190
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 72.4 bits (176), Expect = 7e-15
Identities = 38/214 (17%), Positives = 68/214 (31%), Gaps = 21/214 (9%)
Query: 106 KFQEELSTALR-DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNH--VGAHKI-- 160
K L+ R + + ETP+ + ++ G ++Y+KR+DL +G +KI
Sbjct: 4 KIFALLAKFPRVELIPWETPIQYLPNISREI------GADVYIKRDDLTGLGIGGNKIRK 57
Query: 161 -NNAIGQAMIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVL 219
+G A+ + I H T A KL LD + + + K + +
Sbjct: 58 LEYLLGDAL--SKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLD 115
Query: 220 LMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGK 279
+ + +V F+ E G P +
Sbjct: 116 KIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRA----- 170
Query: 280 ETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEF 313
+ + K D ++ GSG GL
Sbjct: 171 --VGEIATQSEVKFDSIVVAAGSGGTLAGLSLGL 202
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 68.4 bits (166), Expect = 1e-13
Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 23/221 (10%)
Query: 113 TALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKI---NNAIGQAMI 169
+ L +G TPL +R+ G E++LK E N G+ K + I +A
Sbjct: 1 STLEQTIGN-TPLVKLQRMGPDN------GSEVWLKLEGNNPAGSVKDRAALSMIVEAEK 53
Query: 170 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVK 229
+ ++ +G G+A A A + M +++ + M+ GA++
Sbjct: 54 RGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA---MRAYGAELI 110
Query: 230 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKW 289
V + + + N + + P + G E ++
Sbjct: 111 LVTKEQGMEGARDLALEMANRGEGKL-----LDQFNNPDNPYAHYTTTGPEI----WQQT 161
Query: 290 GGKPDVLLACVGSGSNALGL-FHEFINDEDVRLIGVEAAGF 329
GG+ ++ +G+ G+ + V ++G++
Sbjct: 162 GGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEG 202
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 67.9 bits (164), Expect = 2e-13
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 121 RETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVA 180
+TP+ + L+ G +YLK + G+ KI + G V
Sbjct: 6 VKTPIRDSMALSKMA------GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVC 59
Query: 181 ATGAGQHGVATAAACAKLALDCTVFM 206
++ AG G+A A A +L + T+ +
Sbjct: 60 SS-AGNAGMAAAYAARQLGVPATIVV 84
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 67.9 bits (165), Expect = 3e-13
Identities = 38/221 (17%), Positives = 66/221 (29%), Gaps = 21/221 (9%)
Query: 120 GRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGA-HKINNAIGQAMIA---KRMGR 175
G+ TPL R R + G ++LK E N K +I+ +R+ +
Sbjct: 93 GKPTPLV---RS----RLQLPNGVRVWLKLEWYNPFSLSVKDR--PAVEIISRLSRRVEK 143
Query: 176 KSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCF 235
S+VA + GVA +A V++ A E L ++
Sbjct: 144 GSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEE--------FGKLLPRLLGAQVIV 195
Query: 236 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDV 295
+ + ++ S V +E Q+ V
Sbjct: 196 DPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGV 255
Query: 296 LLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKH 336
+ SG + F+ D +R + V+ A G
Sbjct: 256 AGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIR 296
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 66.9 bits (162), Expect = 4e-13
Identities = 47/232 (20%), Positives = 72/232 (31%), Gaps = 24/232 (10%)
Query: 117 DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKIN---NAIGQAMIAKRM 173
+G TPL R+ I K E N + K N I A +
Sbjct: 9 LTIGH-TPLVRLNRIG---------NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVL 58
Query: 174 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233
+ G G+A A A T+ M + L+K LGA + +G
Sbjct: 59 KPGVELVEPTNGNTGIALAYVAAARGYKLTLTM---PETMSIERRKLLKALGANLVLTEG 115
Query: 234 CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKP 293
+ + + YL ++ P + G E E G+
Sbjct: 116 AKGMKGAIQKAEEIVASDPQKYL---LLQQFSNPANPEIHEKTTGPEI----WEDTDGQV 168
Query: 294 DVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEV 345
DV ++ VG+G L +I + + A DS A LA E+
Sbjct: 169 DVFISGVGTGGT-LTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEI 219
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 67.0 bits (162), Expect = 1e-12
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKS----I 178
+ L++AER + ++++K ++H G+ K R+ +
Sbjct: 122 SNLFWAERFG----KQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVG 177
Query: 179 VAATGAGQHGVATAAACAKLALDCTVFM 206
V G A +A CA + VF+
Sbjct: 178 VGCASTGDTSAALSAYCASAGIPSIVFL 205
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 64.0 bits (154), Expect = 5e-12
Identities = 32/225 (14%), Positives = 59/225 (26%), Gaps = 20/225 (8%)
Query: 123 TPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAAT 182
TPL + + + +G +Y K E LN G+ K A G +++ A+
Sbjct: 29 TPLIPLKGPEEA----RKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAVACAS 84
Query: 183 GAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEA 242
A A A L V + ++ L+ G
Sbjct: 85 TGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVH-----------GARIVQVEGN 133
Query: 243 IRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGS 302
+ + +K + P E Q + E + + VG+
Sbjct: 134 FDDALRLTQKLTEAFPVALVNSVNP-HRLEGQKTLAFEVVDELGDAP----HYHALPVGN 188
Query: 303 GSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGV 347
N + + + G + A + V
Sbjct: 189 AGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVER 233
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 63.5 bits (153), Expect = 7e-12
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 115 LRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMG 174
+ Y R TPL + L G + LK E L G+ K A+ +A+ +
Sbjct: 13 IAPYTHR-TPLLTSRLLDGLL------GKRLLLKAEHLQKTGSFKARGALSKAL---ALE 62
Query: 175 RKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADME 212
+ A +G H A A L + V M
Sbjct: 63 NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASP 100
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 63.4 bits (153), Expect = 7e-12
Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 22/200 (11%)
Query: 117 DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKIN---NAIGQAMIAKRM 173
+G TPL + G + +K E N + K N + QA +
Sbjct: 8 YSIGN-TPLVRLKHF--------GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 58
Query: 174 GRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG 233
+ + +G G+A A A A + + + K LL L V
Sbjct: 59 TKGKEIVDATSGNTGIALAYVAA--ARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 116
Query: 234 CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKP 293
+ + S ++ P + + G E + GK
Sbjct: 117 KGMKGAIAKAEEI----VASDPSRYVMLKQFENPANPQIHRETTGPE----IWKDTDGKV 168
Query: 294 DVLLACVGSGSNALGLFHEF 313
DV++A VG+G + G+
Sbjct: 169 DVVVAGVGTGGSITGISRAI 188
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 62.2 bits (150), Expect = 2e-11
Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 16/200 (8%)
Query: 117 DYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRK 176
+ +G TPL + + +G + K E + + K A++ G
Sbjct: 9 ELIGN-TPLVYLNNVA------EGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLI 61
Query: 177 SIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQS-SKVLLMKLLGAQVKAVDGCF 235
+ T A A + S + +++ G ++ D
Sbjct: 62 KPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAK 121
Query: 236 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDV 295
+ A + + Y ++ P + G E K GK D
Sbjct: 122 GMKGAIAKAEEILAKTPNGY----MLQQFENPANPKIHYETTGPEIWKGTG----GKIDG 173
Query: 296 LLACVGSGSNALGLFHEFIN 315
++ +G+G G
Sbjct: 174 FVSGIGTGGTITGAGKYLKE 193
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 298
Score = 29.4 bits (65), Expect = 0.60
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 179 VAATGAGQHGVATAAACAKLALDCTVF 205
V GAG G+ +L V
Sbjct: 10 VLVVGAGFSGLYALYRLRELGRSVHVI 36
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Length = 509
Score = 28.6 bits (63), Expect = 1.3
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 287 EKWGGKPDVLLACVGSGSNALGL 309
E W + ++LA G+ A+GL
Sbjct: 2 EHWATRLGLILAMAGN---AVGL 21
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus
sp. [TaxId: 1409]}
Length = 276
Score = 27.4 bits (59), Expect = 3.0
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 173 MGRKSIVAATGAGQHGVATAAACAKLALDCTVF 205
M R G G G A A AK + +F
Sbjct: 1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALF 33
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 265
Score = 26.6 bits (57), Expect = 5.3
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 179 VAATGAGQHGVATAAACAKLALDCTVF 205
+A G G+ A +D V+
Sbjct: 7 IAVVGGSISGLTAALMLRDAGVDVDVY 33
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 26.0 bits (55), Expect = 8.0
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 174 GRKSIVAATGAGQHGVATAAACAKLALDCTVF 205
++ VA GAG G+A A L+ TVF
Sbjct: 1 AKR--VAVIGAGVSGLAAAYKLKIHGLNVTVF 30
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 25.8 bits (55), Expect = 8.4
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 179 VAATGAGQHGVATAAACAKLALDCTVF 205
V GAG G+A AK + +
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 25.8 bits (55), Expect = 9.0
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 172 RMGRKSIVAATGAGQHGVATAAACAKLALD 201
+ ++V A G G + A+
Sbjct: 228 KEKEVTLVHAYGFSSAGYQQSWGAAEDVAQ 257
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 25.9 bits (55), Expect = 9.2
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 179 VAATGAGQHGVATAAACAKLALDCTVF 205
VA G G G+A A D +
Sbjct: 3 VAVVGGGISGLAVAHHLRSRGTDAVLL 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,354,192
Number of extensions: 63004
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 27
Length of query: 372
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,213,086
Effective search space: 345729510
Effective search space used: 345729510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.5 bits)