BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017392
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OLH|A Chain A, Human 3-Mercaptopyruvate Sulfurtransferase
Length = 302
Score = 231 bits (589), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 162/292 (55%), Gaps = 26/292 (8%)
Query: 75 EPVVSVDWLHANLREPD----LKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVAD 130
+ +VS W+ LR P L++LDASWY+P R+ +E++ HIPGA FFD+D +D
Sbjct: 21 QSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSD 80
Query: 131 RTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG--KGIFSAARVWWMFRVFGHDRVWV 188
RT+ HMLP E FA LG+ +V+YD +G++SA RVWWMFR FGH V +
Sbjct: 81 RTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSL 140
Query: 189 LDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLE 248
LDGGL W + S S Q P F+ + P I T E
Sbjct: 141 LDGGLRHWLRQNLPLSSGKS--------------------QPAPAEFRAQLDPAFIKTYE 180
Query: 249 QVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPAD 308
+K N+E +Q+VD+R+ RF G PEPR GI GH+PG+ IPF L +
Sbjct: 181 DIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPE 240
Query: 309 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 360
E++ F+++ + L KP+V CG+GVTAC +ALG GK DV +YDGSW EW
Sbjct: 241 EIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEW 292
>pdb|1URH|A Chain A, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
pdb|1URH|B Chain B, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
Length = 280
Score = 215 bits (547), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 165/293 (56%), Gaps = 22/293 (7%)
Query: 78 VSVDWLHANLREPDLKVLDASWYMP-DEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLP 136
V DWL ++ +P+++++DA P E RN QEY HIPGA+FFD++ ++D T+ LP
Sbjct: 6 VGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLP 65
Query: 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196
HMLP E FA A+ LG+ L+VYD +FSA R WWM R FG ++V +L GGL W
Sbjct: 66 HMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGW 125
Query: 197 RASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNIEE 256
+ D +L A E E F F P + + V E
Sbjct: 126 QR-----------DDLLLEEGAVELPEG---------EFNAAFNPEAVVKVTDVLLASHE 165
Query: 257 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 316
T Q++DAR ARF+ + EPR G+R GH+PG+ +P+ +++ + L DEL F
Sbjct: 166 NTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGE-LKTTDELDAIFFG 224
Query: 317 EGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVE 369
G+S +KP++ + G+GVTA ++ L L L +V +YDG+W+EWGA+ D PVE
Sbjct: 225 RGVSYDKPIIVSXGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVE 277
>pdb|1ORB|A Chain A, Active Site Structural Features For Chemically Modified
Forms Of Rhodanese
Length = 296
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 156/291 (53%), Gaps = 28/291 (9%)
Query: 77 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 132
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 133 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 190
+ MLPSE FA V +LG+ N +VVYDG G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 191 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQV 250
GG W G+ V S S + P F+ L+ T EQV
Sbjct: 128 GGFRNWLKEGHPVTSEPS--------------------RPEPAIFKATLNRSLLKTYEQV 167
Query: 251 KRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPADE 309
N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L +E
Sbjct: 168 LENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEE 227
Query: 310 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 360
L+ FE + + L KP++ C GVTAC +AL GK DVA+YDGSW EW
Sbjct: 228 LRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278
>pdb|1RHS|A Chain A, Sulfur-Substituted Rhodanese
Length = 296
Score = 204 bits (519), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 155/291 (53%), Gaps = 28/291 (9%)
Query: 77 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 132
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 133 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 190
+ MLPSE FA V +LG+ N +VVYDG G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 191 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQV 250
GG W G+ V S S + P F+ L+ T EQV
Sbjct: 128 GGFRNWLKEGHPVTSEPS--------------------RPEPAIFKATLNRSLLKTYEQV 167
Query: 251 KRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPADE 309
N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L +E
Sbjct: 168 LENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEE 227
Query: 310 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 360
L+ FE + + L KP++ GVTAC +AL GK DVA+YDGSW EW
Sbjct: 228 LRAMFEAKKVDLTKPLIATXRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278
>pdb|1DP2|A Chain A, Crystal Structure Of The Complex Between Rhodanese And
Lipoate
Length = 293
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 155/291 (53%), Gaps = 28/291 (9%)
Query: 77 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 132
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 133 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 190
+ MLPSE FA V +LG+ N +VVYDG G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 191 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQV 250
GG W G+ V S S + P F+ L+ T EQV
Sbjct: 128 GGFRNWLKEGHPVTSEPS--------------------RPEPAIFKATLNRSLLKTYEQV 167
Query: 251 KRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPADE 309
N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L +E
Sbjct: 168 LENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEE 227
Query: 310 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 360
L+ FE + + L KP++ GVTAC +AL GK DVA+YDGSW EW
Sbjct: 228 LRAMFEAKKVDLTKPLIATXRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278
>pdb|1BOH|A Chain A, Sulfur-Substituted Rhodanese (Orthorhombic Form)
pdb|1BOI|A Chain A, N-Terminally Truncated Rhodanese
pdb|2ORA|A Chain A, Rhodanese (Thiosulfate: Cyanide Sulfurtransferase)
Length = 296
Score = 204 bits (518), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 155/291 (53%), Gaps = 28/291 (9%)
Query: 77 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 132
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 133 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 190
+ MLPSE FA V +LG+ N +VVYDG G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 191 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQV 250
GG W G+ V S S + P F+ L+ T EQV
Sbjct: 128 GGFRNWLKEGHPVTSEPS--------------------RPEPAIFKATLNRSLLKTYEQV 167
Query: 251 KRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPADE 309
N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L +E
Sbjct: 168 LENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEE 227
Query: 310 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 360
L+ FE + + L KP++ GVTAC +AL GK DVA+YDGSW EW
Sbjct: 228 LRAMFEAKKVDLTKPLIATXRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278
>pdb|1RHD|A Chain A, Structure Of Bovine Liver Rhodanese. I. Structure
Determination At 2.5 Angstroms Resolution And A
Comparison Of The Conformation And Sequence Of Its Two
Domains
Length = 293
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 156/291 (53%), Gaps = 28/291 (9%)
Query: 77 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 132
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 133 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 190
+ MLPSE FA V +LG+ N +VVY+G G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYNGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 191 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQV 250
GG W G+ V S S + P F+ L+ T EQV
Sbjct: 128 GGFRNWLKEGHPVTSEPS--------------------RPEPAIFKATLNRSLLKTYEQV 167
Query: 251 KRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPADE 309
N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L + +E
Sbjct: 168 LENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMDFLTENGFEKSPEE 227
Query: 310 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 360
L+ FE + + L KP++ GVTAC +AL GK DVA+YDGSW EW
Sbjct: 228 LRAMFEAKKVDLTKPLIATXRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278
>pdb|3UTN|X Chain X, Crystal Structure Of Tum1 Protein From Saccharomyces
Cerevisiae
Length = 327
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 145/275 (52%), Gaps = 20/275 (7%)
Query: 95 LDASWYMPD-EQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153
+DA+WY+P + N IP ++FFD+D ++D+ + PHM P+++ F A+S LG
Sbjct: 50 VDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAMSNLG 109
Query: 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAIL 213
++ D LVVYD G FS+ R W V GH +V++L+ ++R Y ++SS
Sbjct: 110 VQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLN-NFNQYREFKYPLDSS------- 161
Query: 214 KASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGD 273
K +A S + Y+ +FQ K + VK + DARS RF+G
Sbjct: 162 KVAAFSPYPKSHYESS---ESFQDKEIVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGT 218
Query: 274 APEPRKGIRSGHVPGSKCIPFPQMLDASQTLLP-ADE-----LKKRFEQEGISLE--KPV 325
PEPR I SGH+PG++ +P+ +LD P A E L+K + +L+ KP
Sbjct: 219 EPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKALKDFHCTLDPSKPT 278
Query: 326 VTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 360
+ +CGTGV+ I+ L G +V +YDGSWTEW
Sbjct: 279 ICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEW 313
>pdb|1UAR|A Chain A, Crystal Structure Of Rhodanese From Thermus Thermophilus
Hb8
Length = 285
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 134/300 (44%), Gaps = 32/300 (10%)
Query: 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTN 134
E +VS DW+ +L +P ++VL+ DE Y HIPGA +D D
Sbjct: 7 EVLVSTDWVQEHLEDPKVRVLEV-----DED---ILLYDTGHIPGAQ--KIDWQRDFWDP 56
Query: 135 LPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194
+ SEE FA LG+ N +V+Y K + AA +W F+ GH V + +GG
Sbjct: 57 VVRDFISEEEFAKLXERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLXNGGRQ 116
Query: 195 RWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNI 254
+W G + + S E Y+ + ++ H+I +
Sbjct: 117 KWVEEGRPLTTEV-------PSYPPGRYEVPYRDE-SIRAYRDDVLEHII--------KV 160
Query: 255 EEGTYQLVDARSKARFDGDAPE----PRKG-IRSGHVPGSKCIPFPQMLDASQTLLPADE 309
+EG LVD RS + G+ P++G +R+GH+PG+K IP+ + ++ T A+E
Sbjct: 161 KEGKGALVDVRSPQEYRGELTHXPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEE 220
Query: 310 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGAQPDTPV 368
L+ +E GI+ +K +V + L LG V YDGSWTEWG P+
Sbjct: 221 LRALYEPLGITKDKDIVVYXRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPI 280
>pdb|3AAX|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
pdb|3AAX|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
Length = 277
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 130/302 (43%), Gaps = 37/302 (12%)
Query: 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLP 136
+VS DW +NL P + ++ DE + Y HI GA+ +D D +
Sbjct: 7 LVSADWAESNLHAPKVVFVEV-----DEDTSA---YDRDHIAGAI--KLDWRTDLQDPVK 56
Query: 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196
+ F+ +S G+ N+D +++Y G + AA +W F+++GH++V +LDGG +W
Sbjct: 57 RDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKW 116
Query: 197 RASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNIEE 256
G + S + +A+ P F+ ++ + N++
Sbjct: 117 ELDGRPLSSDPVSRPVTSYTASP------------PDNTIRAFRDEVLAAI-----NVK- 158
Query: 257 GTYQLVDARSKARFDGDAPEP-----RKGIRSGHVPGSKCIPFPQMLDASQTLLPADELK 311
L+D RS F G P + R GH+PG+ +P+ + + T +EL
Sbjct: 159 ---NLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELA 215
Query: 312 KRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGAQPDTPVET 370
K + G+ K + C G + L LG +V YDGSWTE+G+ P+E
Sbjct: 216 KLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIEL 275
Query: 371 SS 372
S
Sbjct: 276 GS 277
>pdb|3HWI|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
pdb|3HWI|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
Length = 298
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 130/302 (43%), Gaps = 37/302 (12%)
Query: 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLP 136
+VS DW +NL P + ++ DE + Y HI GA+ +D D +
Sbjct: 28 LVSADWAESNLHAPKVVFVEV-----DEDTSA---YDRDHIAGAI--KLDWRTDLQDPVK 77
Query: 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196
+ F+ +S G+ N+D +++Y G + AA +W F+++GH++V +LDGG +W
Sbjct: 78 RDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKW 137
Query: 197 RASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNIEE 256
G + S + +A+ P F+ ++ + N++
Sbjct: 138 ELDGRPLSSDPVSRPVTSYTASP------------PDNTIRAFRDEVLAAI-----NVK- 179
Query: 257 GTYQLVDARSKARFDGDAPEP-----RKGIRSGHVPGSKCIPFPQMLDASQTLLPADELK 311
L+D RS F G P + R GH+PG+ +P+ + + T +EL
Sbjct: 180 ---NLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELA 236
Query: 312 KRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGAQPDTPVET 370
K + G+ K + C G + L LG +V YDGSWTE+G+ P+E
Sbjct: 237 KLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIEL 296
Query: 371 SS 372
S
Sbjct: 297 GS 298
>pdb|1H4K|X Chain X, Sulfurtransferase From Azotobacter Vinelandii In Complex
With Hypophosphite
pdb|1H4M|X Chain X, Sulfurtransferase From Azotobacter Vinelandii In Complex
With Phosphate
Length = 271
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 114/291 (39%), Gaps = 40/291 (13%)
Query: 83 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSE 142
L A L P+L ++D + Y HIPGA F D P + P
Sbjct: 16 LQARLSAPELILVDLT---------SAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPR 66
Query: 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW----RA 198
E + LG + VVYD +G A R W+ V G R L+GGL W R
Sbjct: 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRP 126
Query: 199 SGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNIEEGT 258
++ + A G L A G++G IW
Sbjct: 127 LSRELPAPAGGPVALSLHDEPTASRDYLLGRLGAADLA-------IW------------- 166
Query: 259 YQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEG 318
DARS + G+ KG GH+PG+ + +D S+ L ++ R E+ G
Sbjct: 167 ----DARSPQEYRGEKVLAAKG---GHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELG 219
Query: 319 ISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVE 369
I+ +K +VT C T + + L LG V Y GSW EWG PDTPVE
Sbjct: 220 ITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE 270
>pdb|3AAY|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
pdb|3AAY|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
Length = 277
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 129/302 (42%), Gaps = 37/302 (12%)
Query: 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLP 136
+VS DW +NL P + ++ DE + Y HI GA+ +D D +
Sbjct: 7 LVSADWAESNLHAPKVVFVEV-----DEDTSA---YDRDHIAGAI--KLDWRTDLQDPVK 56
Query: 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196
+ F+ +S G+ N+D +++Y G + AA +W F+++GH++V +LDGG +W
Sbjct: 57 RDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKW 116
Query: 197 RASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNIEE 256
G + S + +A+ P F+ ++ + N++
Sbjct: 117 ELDGRPLSSDPVSRPVTSYTASP------------PDNTIRAFRDEVLAAI-----NVK- 158
Query: 257 GTYQLVDARSKARFDGDAPEP-----RKGIRSGHVPGSKCIPFPQMLDASQTLLPADELK 311
L+D RS F G P + R GH+PG+ +P+ + + T +EL
Sbjct: 159 ---NLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELA 215
Query: 312 KRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGAQPDTPVET 370
K + G+ K + G + L LG +V YDGSWTE+G+ P+E
Sbjct: 216 KLYADAGLDNSKETIAYXRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIEL 275
Query: 371 SS 372
S
Sbjct: 276 GS 277
>pdb|1E0C|A Chain A, Sulfurtransferase From Azotobacter Vinelandii
Length = 271
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 113/291 (38%), Gaps = 40/291 (13%)
Query: 83 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSE 142
L A L P+L ++D + Y HIPGA F D P + P
Sbjct: 16 LQARLSAPELILVDLT---------SAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPR 66
Query: 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW----RA 198
E + LG + VVYD +G A R W+ V G R L+GGL W R
Sbjct: 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRP 126
Query: 199 SGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNIEEGT 258
++ + A G L A G++G IW
Sbjct: 127 LSRELPAPAGGPVALSLHDEPTASRDYLLGRLGAADLA-------IW------------- 166
Query: 259 YQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEG 318
DARS + G+ KG GH+PG+ + +D S+ L ++ R E+ G
Sbjct: 167 ----DARSPQEYRGEKVLAAKG---GHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELG 219
Query: 319 ISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVE 369
I+ +K +VT T + + L LG V Y GSW EWG PDTPVE
Sbjct: 220 ITPDKEIVTHXQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE 270
>pdb|3HZU|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Ssea (Rhodanese) From Mycobacterium
Tuberculosis
Length = 318
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 127/301 (42%), Gaps = 40/301 (13%)
Query: 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTN 134
E +V+ DWL A++ P L ++++ DE Y V HIPGA+ +D D
Sbjct: 39 ERLVTADWLSAHMGAPGLAIVES-----DED---VLLYDVGHIPGAV--KIDWHTDLNDP 88
Query: 135 LPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194
+ E FA + G+ D +V+Y K + AA W+F +FGH V +L+GG
Sbjct: 89 RVRDYINGEQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRD 148
Query: 195 RWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNI 254
W A + L + V Q P F+ ++ L
Sbjct: 149 LWLAE--------RRETTLDVPTKTCTGYPVVQRNDAPI---RAFRDDVLAIL------- 190
Query: 255 EEGTYQLVDARSKARFDG------DAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPAD 308
G L+D RS + G D PE +R+GH+P + IP+ + D S +
Sbjct: 191 --GAQPLIDVRSPEEYTGKRTHMPDYPE-EGALRAGHIPTAVHIPWGKAADESGRFRSRE 247
Query: 309 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGAQPDTP 367
EL++ ++ I+ + V C G + L LGK DV YDGSWTEWG P
Sbjct: 248 ELERLYDF--INPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWGNAVRVP 305
Query: 368 V 368
+
Sbjct: 306 I 306
>pdb|3IPP|A Chain A, Crystal Structure Of Sulfur-Free Ynje
pdb|3IPP|B Chain B, Crystal Structure Of Sulfur-Free Ynje
Length = 416
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 136/313 (43%), Gaps = 46/313 (14%)
Query: 75 EPVVSVDWLHANLREP---------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDV 125
E +V WLH +L++ D KV++A+W P + Y ++HIPGA + D
Sbjct: 124 EQLVYPQWLH-DLQQGKEVTAKPAGDWKVIEAAWGAP-------KLYLISHIPGADYIDT 175
Query: 126 DGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR 185
+ V + L + + S+E A ++ G+ + +++Y G+ +++AARV + G
Sbjct: 176 NEV--ESEPLWNKV-SDEQLKAMLAKHGIRHDTTVILY-GRDVYAAARVAQIMLYAGVKD 231
Query: 186 VWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIW 245
V +LDGG W +G VE K A + K+ QP L+
Sbjct: 232 VRLLDGGWQTWSDAGLPVERGTPP----KVKAEPDFGVKI------------PAQPQLML 275
Query: 246 TLEQVKRNIEEGTYQLVDARSKARFDGDAP-----EPR---KGIRSGHVPGSKCIPFPQM 297
+EQ + + LV RS F G +P+ G R GH GS
Sbjct: 276 DMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHMEDF 334
Query: 298 LDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 357
+ T+ AD++ ++ I E+ V CGTG A + +G +V+VYDG W
Sbjct: 335 HNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGW 394
Query: 358 TEWGAQPDTPVET 370
EW + P PV T
Sbjct: 395 YEWSSDPKNPVAT 407
>pdb|3P3A|A Chain A, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
pdb|3P3A|B Chain B, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
Length = 320
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 126/306 (41%), Gaps = 50/306 (16%)
Query: 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTN 134
E +V+ DWL +NL P L ++++ DE Y HIPGA+ +D D
Sbjct: 40 ERLVTADWLASNLGRPGLVIVES-----DED---VLLYDTGHIPGAV--KIDWHTDLNDP 89
Query: 135 LPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194
+ E FAA + G+ D +V+Y K + AA W+F +FGH V +LDGG
Sbjct: 90 AVRDYINGEQFAALMDRKGVTRDDTVVIYGDKSNWWAAYAMWVFHLFGHPDVRLLDGGRD 149
Query: 195 RWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNI 254
W ++G D L+ + V + P F+ ++ L
Sbjct: 150 LWVSTGRDT--------TLEVPTRQTSGYPVVERNDAPIR---AFKDDVLRVL------- 191
Query: 255 EEGTYQLVDARSKARFDG------DAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPAD 308
G L+D RS + G D PE +R GH+P + +P+ S+
Sbjct: 192 --GKEPLIDVRSPQEYTGERTHMPDYPE-EGALRGGHIPTAVSVPW------SKAAYDDG 242
Query: 309 ELKKRFEQEGI-----SLEKPVVTACGTGVTACILALGLNRL-GKHDVAVYDGSWTEWGA 362
+ R E E I +KP+V C G + L L G +V YDGSWTEWG
Sbjct: 243 RFRARAELEEIYGFVKPDDKPIVY-CRIGERSSHTWFVLTYLLGHPNVRNYDGSWTEWGN 301
Query: 363 QPDTPV 368
P+
Sbjct: 302 AVRVPI 307
>pdb|3IPO|A Chain A, Crystal Structure Of Ynje
pdb|3IPO|B Chain B, Crystal Structure Of Ynje
Length = 416
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 135/313 (43%), Gaps = 46/313 (14%)
Query: 75 EPVVSVDWLHANLREP---------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDV 125
E +V WLH +L++ D KV++A+W P + Y ++HIPGA + D
Sbjct: 124 EQLVYPQWLH-DLQQGKEVTAKPAGDWKVIEAAWGAP-------KLYLISHIPGADYIDT 175
Query: 126 DGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR 185
+ V + L + + S+E A ++ G+ + +++Y G+ +++AARV + G
Sbjct: 176 NEV--ESEPLWNKV-SDEQLKAMLAKHGIRHDTTVILY-GRDVYAAARVAQIMLYAGVKD 231
Query: 186 VWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIW 245
V +LDGG W +G VE K A + K+ QP L+
Sbjct: 232 VRLLDGGWQTWSDAGLPVERGTPP----KVKAEPDFGVKI------------PAQPQLML 275
Query: 246 TLEQVKRNIEEGTYQLVDARSKARFDGDAP-----EPR---KGIRSGHVPGSKCIPFPQM 297
+EQ + + LV RS F G +P+ G R GH GS
Sbjct: 276 DMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHMEDF 334
Query: 298 LDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 357
+ T+ AD++ ++ I E+ V GTG A + +G +V+VYDG W
Sbjct: 335 HNPDGTMRSADDITAMWKAWNIKPEQQVSFYXGTGWRASETFMYARAMGWKNVSVYDGGW 394
Query: 358 TEWGAQPDTPVET 370
EW + P PV T
Sbjct: 395 YEWSSDPKNPVAT 407
>pdb|2WLX|A Chain A, Putative Thiosulfate Sulfurtransferase Ynje
Length = 423
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 135/313 (43%), Gaps = 46/313 (14%)
Query: 75 EPVVSVDWLHANLREP---------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDV 125
E +V WLH +L++ D KV++A+W P + Y ++HIPGA + D
Sbjct: 123 EQLVYPQWLH-DLQQGKEVTAKPAGDWKVIEAAWGAP-------KLYLISHIPGADYIDT 174
Query: 126 DGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR 185
+ V + L + + S+E A ++ G+ + +++Y G+ +++AARV + G
Sbjct: 175 NEV--ESEPLWNKV-SDEQLKAMLAKHGIRHDTTVILY-GRDVYAAARVAQIMLYAGVKD 230
Query: 186 VWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIW 245
V +LDGG W +G VE K A + K+ QP L+
Sbjct: 231 VRLLDGGWQTWSDAGLPVERGTPP----KVKAEPDFGVKI------------PAQPQLML 274
Query: 246 TLEQVKRNIEEGTYQLVDARSKARFDGDAP-----EPR---KGIRSGHVPGSKCIPFPQM 297
+EQ + + LV RS F G +P+ G R GH GS
Sbjct: 275 DMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHMEDF 333
Query: 298 LDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 357
+ T+ AD++ ++ I E+ V GTG A + +G +V+VYDG W
Sbjct: 334 HNPDGTMRSADDITAMWKAWNIKPEQQVSFYXGTGWRASETFMYARAMGWKNVSVYDGGW 393
Query: 358 TEWGAQPDTPVET 370
EW + P PV T
Sbjct: 394 YEWSSDPKNPVAT 406
>pdb|2WLR|A Chain A, Putative Thiosulfate Sulfurtransferase Ynje
Length = 423
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 130/313 (41%), Gaps = 46/313 (14%)
Query: 75 EPVVSVDWLHANLREP---------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDV 125
E +V WLH +L++ D KV++A+W P + Y ++HIPGA + D
Sbjct: 123 EQLVYPQWLH-DLQQGKEVTAKPAGDWKVIEAAWGAP-------KLYLISHIPGADYIDT 174
Query: 126 DGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR 185
+ V + L + + S+E A ++ G+ + +++Y G+ +++AARV + G
Sbjct: 175 NEV--ESEPLWNKV-SDEQLKAXLAKHGIRHDTTVILY-GRDVYAAARVAQIXLYAGVKD 230
Query: 186 VWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIW 245
V +LDGG W +G VE K A + K+ QP L
Sbjct: 231 VRLLDGGWQTWSDAGLPVERGTPP----KVKAEPDFGVKI------------PAQPQLXL 274
Query: 246 TLEQVKRNIEEGTYQLVDARSKARFDGDAP-----EPR---KGIRSGHVPGSKCIPFPQM 297
EQ + + LV RS F G +P+ G R GH GS
Sbjct: 275 DXEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHXEDF 333
Query: 298 LDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 357
+ T AD++ ++ I E+ V GTG A G +V+VYDG W
Sbjct: 334 HNPDGTXRSADDITAXWKAWNIKPEQQVSFYXGTGWRASETFXYARAXGWKNVSVYDGGW 393
Query: 358 TEWGAQPDTPVET 370
EW + P PV T
Sbjct: 394 YEWSSDPKNPVAT 406
>pdb|1OKG|A Chain A, 3-Mercaptopyruvate Sulfurtransferase From Leishmania Major
Length = 373
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 117/295 (39%), Gaps = 40/295 (13%)
Query: 91 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADR---TTNLPHMLPSEEAFAA 147
+ +++D + + + Q Y H+ A+ DVD + T+ H LP F
Sbjct: 27 EYRIVDCRYSLKIKDHGSIQ-YAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFID 85
Query: 148 AVSALGLENKDGLVVYDGK-GIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESS 206
A G + ++ YD + G R+WW G D +V++GG +A+G + ES
Sbjct: 86 WCXANGXAGELPVLCYDDECGAXGGCRLWWXLNSLGAD-AYVINGGFQACKAAGLEXESG 144
Query: 207 ASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQ--LVDA 264
A+ F+T FQ H + ++E Q + DA
Sbjct: 145 EPSSLPRPATH---------------WPFKTAFQHHYL---------VDEIPPQAIITDA 180
Query: 265 RSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQML---DASQTLLPADELKKRF----EQE 317
RS RF GH+ G++ +P+ L + L +E++ +
Sbjct: 181 RSADRFASTVRPYAADKXPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIXTVVQGA 240
Query: 318 GISLE-KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371
G + + V + G+GVTACI ++ LG +Y GSW+E+ P+ S
Sbjct: 241 GDAADLSSFVFSXGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIXRS 295
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 201 YDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQ--VKRNIEEGT 258
++V S ASG +K EA+++ Y G +G H+ T E+ +++ IE G
Sbjct: 139 FNVGSFASGKETMKLGELLEALKQTYCGPIGAEYM------HITSTEEKRWIQQRIESGR 192
Query: 259 YQLVDARSKARFDGD--APEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 316
++ K RF + A E + PG+K L+ L+P LK+
Sbjct: 193 ATF-NSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS----LEGGDALIPM--LKEMIRH 245
Query: 317 EGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 354
G S + VV +L +N LGK ++D
Sbjct: 246 AGNSGTREVVLGMAHRGRLNVL---VNVLGKKPQDLFD 280
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 201 YDVESSASGDAILKASAASEAIEKVYQGQVGPTTFQTKFQPHLIWTLEQ--VKRNIEEGT 258
++V S ASG +K EA+++ Y G +G H+ T E+ +++ IE G
Sbjct: 139 FNVGSFASGKETMKLGELLEALKQTYCGPIGAEYM------HITSTEEKRWIQQRIESGR 192
Query: 259 YQLVDARSKARFDGD--APEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 316
++ K RF + A E + PG+K L+ L+P LK+
Sbjct: 193 ATF-NSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS----LEGGDALIPM--LKEMIRH 245
Query: 317 EGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 354
G S + VV +L +N LGK ++D
Sbjct: 246 AGNSGTREVVLGMAHRGRLNVL---VNVLGKKPQDLFD 280
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 19/89 (21%)
Query: 112 YQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSA 171
Y HI GA+ ++ + DR ++ LE + VY G G
Sbjct: 32 YNDGHIMGAMAMPIEDLVDRASS------------------SLEKSRDIYVY-GAGDEQT 72
Query: 172 ARVWWMFRVFGHDRVWVLDGGLPRWRASG 200
++ + R G + V L GGL W+A G
Sbjct: 73 SQAVNLLRSAGFEHVSELKGGLAAWKAIG 101
>pdb|1J0E|A Chain A, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|B Chain B, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|C Chain C, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|D Chain D, Acc Deaminase Mutant Reacton Intermediate
Length = 341
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 307 ADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSWTEWGAQPD 365
ADE+ + + GI +K +V C TG T + G+ + G+ DV D S+T +
Sbjct: 179 ADEVINQEVELGIKFDK-IVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ 237
Query: 366 T 366
T
Sbjct: 238 T 238
>pdb|1J0C|A Chain A, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|B Chain B, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|C Chain C, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|D Chain D, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0D|A Chain A, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|B Chain B, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|C Chain C, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|D Chain D, Acc Deaminase Mutant Complexed With Acc
Length = 341
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 307 ADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSWTEWGAQPD 365
ADE+ + + GI +K +V C TG T + G+ + G+ DV D S+T +
Sbjct: 179 ADEVINQEVELGIKFDK-IVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ 237
Query: 366 T 366
T
Sbjct: 238 T 238
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|B Chain B, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|C Chain C, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|D Chain D, 1-Aminocyclopropane-1-Carboxylate Deaminase
Length = 341
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 307 ADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSWTEWGAQPD 365
ADE+ + + GI +K +V C TG T + G+ + G+ DV D S+T +
Sbjct: 179 ADEVINQEVELGIKFDK-IVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ 237
Query: 366 T 366
T
Sbjct: 238 T 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,181,441
Number of Sequences: 62578
Number of extensions: 463260
Number of successful extensions: 1406
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1316
Number of HSP's gapped (non-prelim): 42
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)