Query 017392
Match_columns 372
No_of_seqs 417 out of 2430
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02723 3-mercaptopyruvate su 100.0 1.1E-61 2.4E-66 464.8 29.7 313 59-371 5-318 (320)
2 COG2897 SseA Rhodanese-related 100.0 2.6E-60 5.6E-65 440.6 26.7 277 73-372 8-284 (285)
3 PRK11493 sseA 3-mercaptopyruva 100.0 7.2E-54 1.6E-58 404.5 29.3 276 75-371 4-280 (281)
4 PRK09629 bifunctional thiosulf 100.0 1.9E-52 4.1E-57 428.9 30.2 266 74-371 7-272 (610)
5 KOG1529 Mercaptopyruvate sulfu 100.0 5.6E-50 1.2E-54 363.0 23.0 278 74-370 3-284 (286)
6 cd01445 TST_Repeats Thiosulfat 99.9 9.8E-25 2.1E-29 184.3 12.8 119 78-197 1-137 (138)
7 cd01449 TST_Repeat_2 Thiosulfa 99.9 3.7E-23 8E-28 169.9 12.2 118 245-362 1-118 (118)
8 cd01445 TST_Repeats Thiosulfat 99.9 7E-23 1.5E-27 173.0 12.7 117 245-361 1-137 (138)
9 cd01448 TST_Repeat_1 Thiosulfa 99.9 5.9E-22 1.3E-26 163.8 13.6 122 77-200 1-122 (122)
10 KOG1530 Rhodanese-related sulf 99.9 4.4E-22 9.6E-27 160.3 8.5 115 241-369 21-135 (136)
11 PRK00142 putative rhodanese-re 99.9 1.4E-22 3E-27 193.1 6.5 193 76-363 14-212 (314)
12 cd01519 RHOD_HSP67B2 Member of 99.9 7.4E-22 1.6E-26 158.9 8.9 104 246-362 2-106 (106)
13 cd01448 TST_Repeat_1 Thiosulfa 99.9 1.6E-21 3.5E-26 161.1 10.9 116 244-363 1-121 (122)
14 PLN02160 thiosulfate sulfurtra 99.9 3.5E-21 7.6E-26 162.2 11.0 113 243-371 15-129 (136)
15 PRK11493 sseA 3-mercaptopyruva 99.8 3.6E-21 7.9E-26 181.8 10.7 127 243-371 5-136 (281)
16 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 1.2E-20 2.6E-25 163.5 13.0 125 238-368 31-162 (162)
17 cd01518 RHOD_YceA Member of th 99.8 5.4E-21 1.2E-25 152.8 9.1 99 244-362 3-101 (101)
18 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 2.1E-20 4.6E-25 162.0 12.7 116 74-203 34-162 (162)
19 cd01519 RHOD_HSP67B2 Member of 99.8 1E-20 2.2E-25 152.3 9.8 104 79-198 2-106 (106)
20 cd01449 TST_Repeat_2 Thiosulfa 99.8 1.7E-20 3.7E-25 154.0 10.0 106 78-197 1-117 (118)
21 cd01533 4RHOD_Repeat_2 Member 99.8 1.9E-20 4.1E-25 151.8 9.8 96 244-363 11-108 (109)
22 cd01520 RHOD_YbbB Member of th 99.8 2.4E-20 5.3E-25 155.6 9.0 105 245-362 1-126 (128)
23 PLN02723 3-mercaptopyruvate su 99.8 4E-20 8.6E-25 177.6 11.4 120 240-371 19-152 (320)
24 cd01527 RHOD_YgaP Member of th 99.8 2.9E-20 6.2E-25 147.9 8.5 97 244-368 3-99 (99)
25 cd01533 4RHOD_Repeat_2 Member 99.8 4.9E-20 1.1E-24 149.4 10.0 99 75-200 9-109 (109)
26 PRK09629 bifunctional thiosulf 99.8 5.4E-20 1.2E-24 189.5 11.2 117 243-371 9-130 (610)
27 cd01518 RHOD_YceA Member of th 99.8 7.4E-20 1.6E-24 146.2 9.4 100 76-198 2-101 (101)
28 cd01520 RHOD_YbbB Member of th 99.8 1.1E-19 2.4E-24 151.7 10.5 110 78-198 1-126 (128)
29 PRK00162 glpE thiosulfate sulf 99.8 1E-19 2.2E-24 147.3 9.8 101 244-371 6-106 (108)
30 cd01526 RHOD_ThiF Member of th 99.8 8.8E-20 1.9E-24 150.9 7.8 106 243-364 8-115 (122)
31 TIGR03167 tRNA_sel_U_synt tRNA 99.8 7.9E-19 1.7E-23 166.8 14.9 191 91-336 2-210 (311)
32 smart00450 RHOD Rhodanese Homo 99.8 2.2E-19 4.8E-24 141.5 9.1 98 257-367 3-100 (100)
33 cd01525 RHOD_Kc Member of the 99.8 3.9E-19 8.5E-24 142.8 10.1 102 78-197 1-104 (105)
34 cd01525 RHOD_Kc Member of the 99.8 2.9E-19 6.4E-24 143.5 8.5 99 245-361 1-104 (105)
35 COG2897 SseA Rhodanese-related 99.8 5.9E-19 1.3E-23 164.4 11.3 121 239-371 7-139 (285)
36 cd01534 4RHOD_Repeat_3 Member 99.8 4.1E-19 8.8E-24 140.3 8.7 93 245-362 1-95 (95)
37 PRK11784 tRNA 2-selenouridine 99.8 2.3E-18 5E-23 165.8 15.6 168 79-288 4-187 (345)
38 cd01447 Polysulfide_ST Polysul 99.8 1.2E-19 2.5E-24 145.2 5.5 102 245-363 1-102 (103)
39 cd01527 RHOD_YgaP Member of th 99.8 8.8E-19 1.9E-23 139.3 10.2 97 77-203 3-99 (99)
40 PRK08762 molybdopterin biosynt 99.8 2.6E-18 5.7E-23 168.6 15.3 104 76-207 3-106 (376)
41 PF00581 Rhodanese: Rhodanese- 99.8 2.4E-19 5.1E-24 145.2 6.5 105 246-362 1-112 (113)
42 cd01528 RHOD_2 Member of the R 99.8 8.5E-19 1.8E-23 140.0 9.2 96 245-363 2-99 (101)
43 cd01523 RHOD_Lact_B Member of 99.8 8.5E-19 1.9E-23 139.7 8.8 98 245-361 1-99 (100)
44 PRK00162 glpE thiosulfate sulf 99.8 1.6E-18 3.4E-23 140.2 10.2 103 75-206 4-106 (108)
45 cd01521 RHOD_PspE2 Member of t 99.8 7.1E-19 1.5E-23 142.8 8.0 98 244-368 9-110 (110)
46 cd01522 RHOD_1 Member of the R 99.8 8E-19 1.7E-23 144.1 8.3 105 245-365 1-107 (117)
47 cd01444 GlpE_ST GlpE sulfurtra 99.8 5.3E-19 1.1E-23 139.6 6.9 92 245-362 2-96 (96)
48 cd01534 4RHOD_Repeat_3 Member 99.8 1.3E-18 2.7E-23 137.5 8.7 93 78-198 1-95 (95)
49 cd01521 RHOD_PspE2 Member of t 99.8 2.1E-18 4.5E-23 140.1 10.2 101 75-203 7-110 (110)
50 cd01447 Polysulfide_ST Polysul 99.8 1.9E-18 4.2E-23 138.1 9.1 102 78-200 1-103 (103)
51 cd01524 RHOD_Pyr_redox Member 99.8 2.3E-18 4.9E-23 134.7 9.2 88 246-361 2-89 (90)
52 smart00450 RHOD Rhodanese Homo 99.8 5E-18 1.1E-22 133.7 10.4 99 89-202 2-100 (100)
53 cd01529 4RHOD_Repeats Member o 99.8 2.6E-18 5.5E-23 136.0 8.6 87 256-362 10-96 (96)
54 cd01530 Cdc25 Cdc25 phosphatas 99.7 2.3E-18 5E-23 142.2 7.8 97 245-361 4-120 (121)
55 cd01528 RHOD_2 Member of the R 99.7 4.6E-18 9.9E-23 135.8 9.2 94 78-198 2-98 (101)
56 PLN02160 thiosulfate sulfurtra 99.7 1.4E-17 3E-22 140.3 12.6 115 75-207 14-130 (136)
57 KOG1530 Rhodanese-related sulf 99.7 9.2E-18 2E-22 135.4 10.6 115 74-204 21-135 (136)
58 PF00581 Rhodanese: Rhodanese- 99.7 6.4E-18 1.4E-22 136.8 9.2 105 79-198 1-112 (113)
59 cd01526 RHOD_ThiF Member of th 99.7 7.6E-18 1.6E-22 139.3 9.6 109 74-202 6-117 (122)
60 cd01530 Cdc25 Cdc25 phosphatas 99.7 8.4E-18 1.8E-22 138.9 9.2 99 77-197 3-120 (121)
61 cd01523 RHOD_Lact_B Member of 99.7 1.8E-17 4E-22 132.0 9.9 98 78-197 1-99 (100)
62 cd01535 4RHOD_Repeat_4 Member 99.7 1.2E-17 2.6E-22 142.2 8.8 87 258-371 11-97 (145)
63 cd01524 RHOD_Pyr_redox Member 99.7 2.3E-17 5E-22 128.9 8.6 89 78-197 1-89 (90)
64 cd01529 4RHOD_Repeats Member o 99.7 2.8E-17 6.2E-22 129.9 9.0 94 80-198 3-96 (96)
65 cd01444 GlpE_ST GlpE sulfurtra 99.7 2.7E-17 5.8E-22 129.8 8.6 91 78-197 2-95 (96)
66 cd01531 Acr2p Eukaryotic arsen 99.7 4.6E-17 9.9E-22 132.8 9.2 99 244-363 3-112 (113)
67 cd01522 RHOD_1 Member of the R 99.7 4.1E-17 8.9E-22 134.0 8.8 103 78-199 1-105 (117)
68 cd01531 Acr2p Eukaryotic arsen 99.7 5.1E-17 1.1E-21 132.5 8.9 101 76-199 2-112 (113)
69 cd01532 4RHOD_Repeat_1 Member 99.7 1.8E-17 4E-22 130.1 5.9 86 253-362 5-92 (92)
70 cd00158 RHOD Rhodanese Homolog 99.7 1.7E-17 3.7E-22 128.4 5.7 86 252-361 4-89 (89)
71 PRK08762 molybdopterin biosynt 99.7 4.7E-17 1E-21 159.8 10.0 102 244-371 4-105 (376)
72 cd01535 4RHOD_Repeat_4 Member 99.7 6.8E-17 1.5E-21 137.5 9.5 96 83-207 2-98 (145)
73 TIGR02981 phageshock_pspE phag 99.7 5.4E-17 1.2E-21 129.4 7.6 81 257-362 17-97 (101)
74 cd01532 4RHOD_Repeat_1 Member 99.7 1E-16 2.2E-21 125.9 8.5 87 86-198 5-92 (92)
75 COG0607 PspE Rhodanese-related 99.7 9.7E-17 2.1E-21 129.6 8.6 96 251-371 13-109 (110)
76 PRK01415 hypothetical protein; 99.7 1.4E-16 3E-21 145.9 9.3 103 241-363 110-212 (247)
77 PRK10287 thiosulfate:cyanide s 99.7 1.1E-16 2.3E-21 128.3 7.4 81 257-362 19-99 (104)
78 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 2.6E-16 5.6E-21 128.4 8.9 98 77-197 3-112 (113)
79 cd00158 RHOD Rhodanese Homolog 99.7 2.7E-16 5.8E-21 121.6 7.4 88 83-197 2-89 (89)
80 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 4.8E-16 1E-20 126.8 8.9 98 244-362 3-113 (113)
81 cd01446 DSP_MapKP N-terminal r 99.6 2.8E-16 6E-21 131.8 7.4 109 77-198 1-126 (132)
82 PRK00142 putative rhodanese-re 99.6 1.5E-15 3.2E-20 145.0 11.1 103 73-199 109-212 (314)
83 PRK01415 hypothetical protein; 99.6 1.3E-15 2.8E-20 139.5 9.9 104 73-200 109-213 (247)
84 PRK05320 rhodanese superfamily 99.6 1.5E-15 3.2E-20 141.0 8.8 101 243-363 110-216 (257)
85 TIGR02981 phageshock_pspE phag 99.6 2.7E-15 5.9E-20 119.6 7.7 81 90-198 17-97 (101)
86 PRK07878 molybdopterin biosynt 99.6 2E-15 4.3E-20 148.9 8.4 100 240-363 284-384 (392)
87 PRK10287 thiosulfate:cyanide s 99.6 4.2E-15 9E-20 119.1 7.9 81 90-198 19-99 (104)
88 PRK05320 rhodanese superfamily 99.6 1.1E-14 2.4E-19 135.1 10.3 101 74-198 108-215 (257)
89 cd01446 DSP_MapKP N-terminal r 99.6 6E-15 1.3E-19 123.6 7.4 105 245-363 2-127 (132)
90 PRK07411 hypothetical protein; 99.6 7.8E-15 1.7E-19 144.4 8.4 99 243-363 282-382 (390)
91 COG0607 PspE Rhodanese-related 99.6 2.8E-14 6E-19 115.1 10.0 97 82-205 11-108 (110)
92 PRK07878 molybdopterin biosynt 99.5 2.1E-14 4.6E-19 141.6 10.7 101 74-201 285-386 (392)
93 PRK05597 molybdopterin biosynt 99.5 1.6E-14 3.4E-19 140.6 7.7 95 242-362 260-354 (355)
94 PRK11784 tRNA 2-selenouridine 99.5 4.8E-14 1E-18 136.0 9.3 103 247-363 5-129 (345)
95 TIGR03167 tRNA_sel_U_synt tRNA 99.5 5.8E-14 1.3E-18 133.6 6.7 98 258-368 2-119 (311)
96 PRK05597 molybdopterin biosynt 99.5 1.3E-13 2.9E-18 134.2 8.6 95 75-198 260-354 (355)
97 PRK05600 thiamine biosynthesis 99.4 1.9E-13 4.1E-18 133.5 7.0 94 244-358 272-369 (370)
98 KOG1529 Mercaptopyruvate sulfu 99.4 8.2E-13 1.8E-17 120.9 10.2 126 243-371 5-137 (286)
99 PRK07411 hypothetical protein; 99.4 4.4E-13 9.6E-18 132.0 8.9 104 74-202 280-385 (390)
100 PRK05600 thiamine biosynthesis 99.3 8.5E-12 1.8E-16 121.9 8.0 94 77-194 272-369 (370)
101 COG1054 Predicted sulfurtransf 99.2 5.3E-11 1.2E-15 109.6 7.5 104 241-364 111-214 (308)
102 COG1054 Predicted sulfurtransf 99.1 1.1E-10 2.4E-15 107.6 7.1 117 59-198 96-212 (308)
103 PRK01269 tRNA s(4)U8 sulfurtra 99.1 4.7E-11 1E-15 120.9 4.8 73 257-355 406-482 (482)
104 KOG2017 Molybdopterin synthase 98.9 1.3E-09 2.9E-14 101.9 6.0 105 240-364 314-420 (427)
105 KOG3772 M-phase inducer phosph 98.9 3.2E-09 7E-14 99.5 6.8 101 74-199 154-276 (325)
106 KOG3772 M-phase inducer phosph 98.9 3.1E-09 6.7E-14 99.6 6.2 99 243-363 156-276 (325)
107 PRK01269 tRNA s(4)U8 sulfurtra 98.8 1.4E-08 3.1E-13 102.9 7.4 72 90-190 406-481 (482)
108 KOG2017 Molybdopterin synthase 98.5 1.3E-07 2.8E-12 88.8 5.0 102 75-199 316-419 (427)
109 COG5105 MIH1 Mitotic inducer, 98.1 8.7E-06 1.9E-10 75.7 6.9 99 75-198 241-357 (427)
110 COG5105 MIH1 Mitotic inducer, 97.9 3.8E-05 8.3E-10 71.5 7.2 97 243-362 242-357 (427)
111 KOG1717 Dual specificity phosp 96.5 0.0019 4.1E-08 59.1 3.2 106 77-199 5-124 (343)
112 PF04273 DUF442: Putative phos 96.4 0.021 4.6E-07 46.1 8.1 86 245-343 15-107 (110)
113 COG2603 Predicted ATPase [Gene 96.2 0.011 2.4E-07 55.0 6.3 134 91-294 15-168 (334)
114 TIGR01244 conserved hypothetic 96.2 0.054 1.2E-06 45.3 9.7 94 245-348 15-113 (135)
115 COG2603 Predicted ATPase [Gene 94.1 0.067 1.5E-06 49.9 4.3 92 257-360 14-126 (334)
116 KOG3636 Uncharacterized conser 92.5 0.42 9.2E-06 47.1 7.3 100 78-197 309-427 (669)
117 KOG1093 Predicted protein kina 91.8 0.037 7.9E-07 56.0 -0.9 94 75-195 621-717 (725)
118 COG3453 Uncharacterized protei 90.7 1.4 3E-05 35.9 7.2 91 245-343 16-108 (130)
119 KOG0814 Glyoxylase [General fu 88.6 0.18 3.8E-06 43.7 0.7 55 7-64 166-233 (237)
120 smart00195 DSPc Dual specifici 85.5 2.6 5.6E-05 34.8 6.2 30 319-348 75-107 (138)
121 KOG1093 Predicted protein kina 85.1 0.17 3.8E-06 51.3 -1.4 94 244-360 623-718 (725)
122 PF04273 DUF442: Putative phos 84.9 3.4 7.4E-05 33.2 6.4 83 77-180 14-107 (110)
123 KOG1717 Dual specificity phosp 82.3 0.78 1.7E-05 42.4 1.8 100 245-363 6-124 (343)
124 TIGR01244 conserved hypothetic 82.0 8.4 0.00018 32.0 7.8 53 143-204 76-129 (135)
125 PF13350 Y_phosphatase3: Tyros 81.7 3.3 7.1E-05 35.6 5.4 42 307-349 110-153 (164)
126 cd00127 DSPc Dual specificity 80.1 6.3 0.00014 32.3 6.5 80 257-347 27-109 (139)
127 PLN02727 NAD kinase 79.7 6.8 0.00015 42.7 7.9 86 244-335 268-354 (986)
128 COG2453 CDC14 Predicted protei 76.2 8.4 0.00018 33.7 6.4 30 319-348 102-134 (180)
129 PF09992 DUF2233: Predicted pe 69.7 3.9 8.4E-05 35.2 2.6 44 152-195 95-142 (170)
130 PF05706 CDKN3: Cyclin-depende 69.1 4.2 9.2E-05 35.2 2.6 27 320-346 131-159 (168)
131 KOG3636 Uncharacterized conser 66.2 7.7 0.00017 38.6 4.1 85 258-361 326-427 (669)
132 PF09992 DUF2233: Predicted pe 64.5 4.2 9.2E-05 35.0 1.8 42 318-359 96-142 (170)
133 PTZ00393 protein tyrosine phos 63.1 16 0.00036 33.5 5.4 29 320-348 168-198 (241)
134 PTZ00242 protein tyrosine phos 62.1 19 0.00041 31.1 5.4 19 319-337 95-114 (166)
135 PF00782 DSPc: Dual specificit 54.7 15 0.00032 29.9 3.4 40 308-348 60-102 (133)
136 PLN02727 NAD kinase 53.4 43 0.00094 36.8 7.3 87 75-171 266-355 (986)
137 COG2453 CDC14 Predicted protei 52.2 29 0.00064 30.2 5.1 47 138-184 84-134 (180)
138 KOG0333 U5 snRNP-like RNA heli 51.9 25 0.00055 36.0 5.0 45 310-358 508-552 (673)
139 KOG0333 U5 snRNP-like RNA heli 51.8 25 0.00055 36.0 5.0 55 137-193 497-551 (673)
140 smart00195 DSPc Dual specifici 48.6 51 0.0011 26.9 5.8 31 154-184 75-107 (138)
141 PTZ00393 protein tyrosine phos 43.9 63 0.0014 29.8 5.9 47 137-183 148-197 (241)
142 TIGR01796 CM_mono_aroH monofun 43.6 23 0.0005 28.7 2.7 46 309-354 25-73 (117)
143 PF03162 Y_phosphatase2: Tyros 43.4 24 0.00053 30.4 3.1 41 308-348 77-119 (164)
144 COG0062 Uncharacterized conser 43.2 60 0.0013 29.1 5.6 32 322-354 49-83 (203)
145 TIGR00853 pts-lac PTS system, 42.2 32 0.00069 26.8 3.3 38 322-360 3-44 (95)
146 PRK10310 PTS system galactitol 41.8 53 0.0011 25.4 4.5 37 324-361 4-45 (94)
147 COG2518 Pcm Protein-L-isoaspar 41.5 59 0.0013 29.3 5.3 56 308-363 59-136 (209)
148 PF01451 LMWPc: Low molecular 41.4 20 0.00044 29.5 2.2 37 325-361 1-42 (138)
149 PRK09590 celB cellobiose phosp 39.0 31 0.00068 27.4 2.8 37 323-360 2-42 (104)
150 PF05706 CDKN3: Cyclin-depende 38.8 38 0.00081 29.4 3.4 43 140-182 114-159 (168)
151 PTZ00242 protein tyrosine phos 38.6 99 0.0021 26.6 6.1 19 155-173 96-114 (166)
152 PRK12361 hypothetical protein; 37.7 1.2E+02 0.0027 31.4 7.8 42 290-336 146-190 (547)
153 PF03853 YjeF_N: YjeF-related 35.8 88 0.0019 26.9 5.4 33 319-352 22-57 (169)
154 PRK12550 shikimate 5-dehydroge 35.4 88 0.0019 29.3 5.7 46 310-356 110-155 (272)
155 KOG0330 ATP-dependent RNA heli 34.5 47 0.001 32.9 3.7 48 308-359 289-336 (476)
156 cd05564 PTS_IIB_chitobiose_lic 34.0 42 0.0009 26.0 2.8 36 324-360 1-40 (96)
157 cd00079 HELICc Helicase superf 34.0 1.2E+02 0.0026 23.7 5.7 48 308-357 15-62 (131)
158 TIGR02689 ars_reduc_gluta arse 33.8 71 0.0015 25.9 4.3 35 324-358 2-37 (126)
159 PRK12550 shikimate 5-dehydroge 33.1 90 0.0019 29.3 5.4 46 144-191 109-154 (272)
160 cd00127 DSPc Dual specificity 32.9 82 0.0018 25.4 4.6 28 156-183 80-109 (139)
161 COG0169 AroE Shikimate 5-dehyd 32.8 1.1E+02 0.0024 28.9 6.0 50 308-357 109-160 (283)
162 COG3453 Uncharacterized protei 32.7 81 0.0018 25.8 4.2 82 76-175 14-104 (130)
163 PLN03050 pyridoxine (pyridoxam 32.4 60 0.0013 30.0 4.0 30 323-353 61-93 (246)
164 PLN02645 phosphoglycolate phos 32.2 61 0.0013 30.9 4.2 112 75-203 13-134 (311)
165 smart00226 LMWPc Low molecular 32.1 47 0.001 27.3 3.0 37 325-361 1-38 (140)
166 cd05191 NAD_bind_amino_acid_DH 31.4 1.7E+02 0.0036 21.8 5.8 33 322-354 22-54 (86)
167 COG0162 TyrS Tyrosyl-tRNA synt 30.7 59 0.0013 32.4 3.8 54 304-364 18-81 (401)
168 cd05565 PTS_IIB_lactose PTS_II 30.6 46 0.00099 26.2 2.5 37 324-361 2-42 (99)
169 PF02302 PTS_IIB: PTS system, 30.1 54 0.0012 24.5 2.8 32 324-356 1-37 (90)
170 PF01451 LMWPc: Low molecular 30.0 39 0.00085 27.7 2.2 37 160-196 1-41 (138)
171 PRK12549 shikimate 5-dehydroge 29.8 1.3E+02 0.0028 28.3 5.9 34 322-356 127-160 (284)
172 TIGR03121 one_C_dehyd_A formyl 29.7 81 0.0018 32.8 4.8 27 171-198 165-193 (556)
173 KOG3109 Haloacid dehalogenase- 29.0 1.4E+02 0.003 27.3 5.5 46 139-189 160-205 (244)
174 PLN02918 pyridoxine (pyridoxam 28.6 1.1E+02 0.0025 31.7 5.6 31 322-353 135-168 (544)
175 TIGR02804 ExbD_2 TonB system t 27.9 1.9E+02 0.0041 23.2 5.9 47 305-353 69-118 (121)
176 COG3414 SgaB Phosphotransferas 27.9 77 0.0017 24.6 3.3 26 323-348 2-32 (93)
177 PRK00258 aroE shikimate 5-dehy 27.7 1.5E+02 0.0032 27.7 5.9 36 322-358 123-158 (278)
178 smart00226 LMWPc Low molecular 27.6 76 0.0017 26.0 3.5 43 160-204 1-43 (140)
179 PF00782 DSPc: Dual specificit 27.5 88 0.0019 25.1 3.9 41 143-184 60-102 (133)
180 PRK12749 quinate/shikimate deh 27.3 1.5E+02 0.0032 28.0 5.8 45 311-356 112-157 (288)
181 PRK10126 tyrosine phosphatase; 26.9 90 0.002 26.1 3.9 38 323-361 3-41 (147)
182 PF07736 CM_1: Chorismate muta 26.6 42 0.0009 27.3 1.6 47 308-354 24-73 (118)
183 PRK11391 etp phosphotyrosine-p 26.6 96 0.0021 25.9 4.0 38 323-361 3-41 (144)
184 PF03610 EIIA-man: PTS system 26.2 2.6E+02 0.0056 22.1 6.3 46 308-355 45-90 (116)
185 PRK04537 ATP-dependent RNA hel 26.1 1.3E+02 0.0027 31.6 5.5 38 320-358 255-292 (572)
186 COG2518 Pcm Protein-L-isoaspar 26.0 1.8E+02 0.0038 26.3 5.7 57 142-198 58-135 (209)
187 COG0513 SrmB Superfamily II DN 25.9 1.2E+02 0.0025 31.3 5.2 34 324-358 275-308 (513)
188 PRK11057 ATP-dependent DNA hel 25.6 1.3E+02 0.0028 31.8 5.5 47 308-358 225-271 (607)
189 PRK05852 acyl-CoA synthetase; 25.3 1.3E+02 0.0029 30.4 5.6 60 292-358 44-103 (534)
190 cd05567 PTS_IIB_mannitol PTS_I 25.3 77 0.0017 23.9 2.9 37 323-360 1-42 (87)
191 TIGR00614 recQ_fam ATP-depende 25.0 1.3E+02 0.0028 30.4 5.4 48 308-358 214-261 (470)
192 COG0373 HemA Glutamyl-tRNA red 24.8 5.3E+02 0.011 25.9 9.3 117 156-298 177-298 (414)
193 PRK10499 PTS system N,N'-diace 24.7 84 0.0018 24.9 3.1 26 323-348 4-33 (106)
194 PF03162 Y_phosphatase2: Tyros 24.6 81 0.0018 27.1 3.2 46 138-183 72-118 (164)
195 PF13350 Y_phosphatase3: Tyros 24.4 1.3E+02 0.0028 25.5 4.5 43 142-185 110-153 (164)
196 PF14566 PTPlike_phytase: Inos 24.4 1.3E+02 0.0028 25.3 4.4 33 301-333 102-135 (149)
197 TIGR01389 recQ ATP-dependent D 24.4 1.4E+02 0.003 31.3 5.5 47 308-358 213-259 (591)
198 PF00501 AMP-binding: AMP-bind 24.1 1.6E+02 0.0034 28.5 5.7 52 291-348 21-72 (417)
199 PTZ00145 phosphoribosylpyropho 23.9 7.7E+02 0.017 25.0 10.4 64 283-352 330-393 (439)
200 PF13344 Hydrolase_6: Haloacid 23.6 2.8E+02 0.006 21.5 5.9 43 138-184 15-57 (101)
201 PTZ00110 helicase; Provisional 23.3 1.6E+02 0.0035 30.5 5.7 49 308-358 364-412 (545)
202 TIGR01587 cas3_core CRISPR-ass 22.7 1.4E+02 0.0031 28.6 5.0 48 308-357 210-258 (358)
203 PRK12548 shikimate 5-dehydroge 22.7 2E+02 0.0044 27.0 5.8 45 311-356 114-159 (289)
204 COG2213 MtlA Phosphotransferas 22.5 1.8E+02 0.0039 28.9 5.3 34 158-191 379-416 (472)
205 COG0169 AroE Shikimate 5-dehyd 22.5 1.7E+02 0.0038 27.6 5.3 50 143-194 109-161 (283)
206 TIGR02190 GlrX-dom Glutaredoxi 22.5 1.5E+02 0.0033 21.6 4.0 30 155-184 5-34 (79)
207 PRK12361 hypothetical protein; 22.4 2.3E+02 0.0049 29.4 6.6 41 140-180 156-200 (547)
208 PRK13530 arsenate reductase; P 22.3 1.4E+02 0.0031 24.5 4.2 36 323-358 4-40 (133)
209 PRK11776 ATP-dependent RNA hel 21.9 1.6E+02 0.0034 29.7 5.2 47 308-358 231-277 (460)
210 PRK04837 ATP-dependent RNA hel 21.6 1.8E+02 0.0039 28.8 5.5 36 321-357 254-289 (423)
211 cd02185 AroH Chorismate mutase 21.6 95 0.0021 25.2 2.8 46 309-354 25-73 (117)
212 COG0462 PrsA Phosphoribosylpyr 21.5 7.3E+02 0.016 23.9 11.1 169 163-354 102-274 (314)
213 cd00115 LMWPc Substituted upda 21.3 1E+02 0.0023 25.3 3.2 37 324-360 2-40 (141)
214 COG0009 SUA5 Putative translat 21.2 1.4E+02 0.0031 26.9 4.2 32 305-336 44-75 (211)
215 COG1021 EntE Peptide arylation 21.0 2.1E+02 0.0046 28.7 5.5 46 308-353 64-109 (542)
216 COG4822 CbiK Cobalamin biosynt 20.9 1.4E+02 0.0031 27.1 4.0 35 319-353 134-173 (265)
217 TIGR00640 acid_CoA_mut_C methy 20.8 4E+02 0.0086 21.9 6.5 58 141-202 41-107 (132)
218 PRK08117 4-aminobutyrate amino 20.6 1.8E+02 0.0038 29.1 5.2 53 308-361 89-143 (433)
219 PF13242 Hydrolase_like: HAD-h 20.6 1.5E+02 0.0032 21.4 3.5 48 139-192 4-52 (75)
220 PF00733 Asn_synthase: Asparag 20.5 1.3E+02 0.0029 26.8 4.1 36 319-354 14-49 (255)
221 PRK07514 malonyl-CoA synthase; 20.5 2E+02 0.0043 28.7 5.7 41 308-348 39-79 (504)
222 PLN03049 pyridoxine (pyridoxam 20.5 2E+02 0.0044 29.2 5.6 31 322-353 59-92 (462)
223 PF07879 PHB_acc_N: PHB/PHA ac 20.4 1.1E+02 0.0024 22.0 2.6 28 243-270 18-46 (64)
224 PRK02458 ribose-phosphate pyro 20.4 5.2E+02 0.011 24.9 8.2 92 70-190 105-199 (323)
225 cd01078 NAD_bind_H4MPT_DH NADP 20.0 2.8E+02 0.006 24.1 5.8 46 309-355 14-60 (194)
No 1
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=100.00 E-value=1.1e-61 Score=464.83 Aligned_cols=313 Identities=86% Similarity=1.412 Sum_probs=279.5
Q ss_pred ccccccccccCCCCCCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCC
Q 017392 59 AAGRRADYSTLSVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHM 138 (372)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~ 138 (372)
.+.+.+.+++.+.+....+|+++||++++++++++|||+||+++.+.|++.++|..||||||+|+|+..+.+.....+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~ 84 (320)
T PLN02723 5 GSETKANYSTQSISTNEPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHM 84 (320)
T ss_pred chhhcccCcccccccCCceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCC
Confidence 56777888888888888999999999999988899999999888777776678999999999999998887766677899
Q ss_pred CCCHHHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhh
Q 017392 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAA 218 (372)
Q Consensus 139 ~p~~~~~~~~l~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~ 218 (372)
+|+.++|+++|+.+|++++++|||||+.+.+.++|++|+|+.+||++|++|+||+.+|+++|+|+++..+.+++++...+
T Consensus 85 lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~ 164 (320)
T PLN02723 85 LPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAA 164 (320)
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCcccccccccc
Confidence 99999999999999999999999999988888899999999999999999999999999999999987654444444445
Q ss_pred HHHHHHhhcCC-CCCcceeeccCCccccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccc
Q 017392 219 SEAIEKVYQGQ-VGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQM 297 (372)
Q Consensus 219 ~~~~~~~~~~~-~~~~~~~~~~~~~~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l 297 (372)
.+.+++.|.++ +.+..|...+++.++++.+++.+++.+++++|||+|+++||.|....+....+.||||||+|+|+.++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~ 244 (320)
T PLN02723 165 SEAIEKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQM 244 (320)
T ss_pred ccccccccccCCCCCCcccccCCccceecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHh
Confidence 55666666543 56678888889999999999999998778899999999999998777666678999999999999998
Q ss_pred cccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 298 LDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
.+.+++|++.++|++++.+.|++++++||+||++|.+|+.++++|+.+||+||++|+|||.+|...+++|++++
T Consensus 245 ~~~~~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 245 LDSSQTLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS 318 (320)
T ss_pred cCCCCCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence 88888999999999999999999999999999999999999999999999999999999999999989999986
No 2
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-60 Score=440.59 Aligned_cols=277 Identities=42% Similarity=0.811 Sum_probs=256.9
Q ss_pred CCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 017392 73 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (372)
Q Consensus 73 ~~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~ 152 (372)
+...+|+++||.++|++++++++|+|+..++..+ .++|..||||||++++++........+++|+|++++|+++|+++
T Consensus 8 ~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~--~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~ 85 (285)
T COG2897 8 SSEFLVSPDWLAENLDDPAVVIVDARIILPDPDD--AEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGEL 85 (285)
T ss_pred CcceEEcHHHHHhhccccccccCceEEEeCCcch--HHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHc
Confidence 4578999999999999888899999988877654 58999999999999999987777666899999999999999999
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCCCCC
Q 017392 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGP 232 (372)
Q Consensus 153 gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (372)
||+++++||+|++.+++.|+|+||+|+++||++|++||||+++|+++|+|+++.++ ..++
T Consensus 86 GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~--------------------~~~~ 145 (285)
T COG2897 86 GIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPP--------------------EPPP 145 (285)
T ss_pred CCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCC--------------------CCCC
Confidence 99999999999998999999999999999999999999999999999999998654 2467
Q ss_pred cceeeccCCccccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHH
Q 017392 233 TTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKK 312 (372)
Q Consensus 233 ~~~~~~~~~~~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~ 312 (372)
..|..+++...+++.++++..++.+..+|||+|+++||.|+..+|+... .||||||+|+||.++.+....+++.++++.
T Consensus 146 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~-~GHIPGAiNipw~~~~~~~~~~~~~~~~~~ 224 (285)
T COG2897 146 TTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGK-AGHIPGAINIPWTDLVDDGGLFKSPEEIAR 224 (285)
T ss_pred ccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCC-CCCCCCCcCcCHHHHhcCCCccCcHHHHHH
Confidence 7888899999999999999999988899999999999999999887665 899999999999999997788999999999
Q ss_pred HHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccCC
Q 017392 313 RFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETSS 372 (372)
Q Consensus 313 ~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~~ 372 (372)
+++..||+++++||+||++|.+|+..+++|+.+|++++++|||||.||.+.++.||++|+
T Consensus 225 l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 225 LYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred HHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999999999874
No 3
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=100.00 E-value=7.2e-54 Score=404.53 Aligned_cols=276 Identities=40% Similarity=0.818 Sum_probs=241.8
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCC-CCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017392 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQ-RNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (372)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~-r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~g 153 (372)
..+|+++||++++++++++|||+|+...... ++...+|..||||||+|+|+..+.......++++|++++|+++++.+|
T Consensus 4 ~~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (281)
T PRK11493 4 TWFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELG 83 (281)
T ss_pred CcccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 4689999999999988999999985433221 122478999999999999998876655566789999999999999999
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCCCCCc
Q 017392 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPT 233 (372)
Q Consensus 154 i~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (372)
++++++||+||..+.+.+++++|+|+.+||++|++|+||+.+|+++|+|+++... .+.+.
T Consensus 84 i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~--------------------~~~~~ 143 (281)
T PRK11493 84 VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV--------------------ELPEG 143 (281)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC--------------------CCCCC
Confidence 9999999999997776789999999999999999999999999999999988754 13456
Q ss_pred ceeeccCCccccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHH
Q 017392 234 TFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKR 313 (372)
Q Consensus 234 ~~~~~~~~~~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~ 313 (372)
+|....++..+++.+++...+++++++|||+|+++||.|....+....+.||||||+|+|+.++.+ .+.++++++++++
T Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~-~~~~~~~~~l~~~ 222 (281)
T PRK11493 144 EFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVR-EGELKTTDELDAI 222 (281)
T ss_pred cccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcC-CCCcCCHHHHHHH
Confidence 777777788889999999888777789999999999999776665556789999999999999875 4678999999999
Q ss_pred HHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 314 FEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 314 ~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
|.+.|++++++||+||++|.||+.++++|+.+||+||++|+|||.+|....++|++++
T Consensus 223 ~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 223 FFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred HHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 9999999999999999999999999999999999999999999999998658999987
No 4
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=1.9e-52 Score=428.86 Aligned_cols=266 Identities=27% Similarity=0.463 Sum_probs=237.8
Q ss_pred CCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017392 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (372)
Q Consensus 74 ~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~g 153 (372)
..++||++||++++++++++|||+| ..++|..||||||+|+|++.+........+++|+.++|++.++++|
T Consensus 7 ~~~lIs~~eL~~~l~~~~vvIIDvR---------~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lG 77 (610)
T PRK09629 7 LSLVIEPNDLLERLDAPELILVDLT---------SSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELG 77 (610)
T ss_pred CCceecHHHHHHHhcCCCEEEEECC---------ChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcC
Confidence 4578999999999998899999996 3479999999999999987654444456689999999999999999
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCCCCCc
Q 017392 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPT 233 (372)
Q Consensus 154 i~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (372)
++++++||+||+.+...++|+||+|+++||++|++||||+.+|+.+|+|+++..+. ..+.
T Consensus 78 I~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~--------------------~~~~ 137 (610)
T PRK09629 78 HNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPP--------------------VAGG 137 (610)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCC--------------------CCCc
Confidence 99999999999988777999999999999999999999999999999999876531 2345
Q ss_pred ceeeccCCccccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHH
Q 017392 234 TFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKR 313 (372)
Q Consensus 234 ~~~~~~~~~~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~ 313 (372)
.|....++..+++.+++.+++++++++|||+|+++||.|.... ..+.||||||+|+||..+.+..+.++++++++++
T Consensus 138 ~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~---~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~ 214 (610)
T PRK09629 138 PVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVV---AAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEI 214 (610)
T ss_pred ceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccc---cccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHH
Confidence 6767777788999999999998888899999999999987542 2378999999999999888777889999999999
Q ss_pred HHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 314 FEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 314 ~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
+.+.|++++++||+||++|.+|+.++++|+.+||+||++|||||.+|....++|+++.
T Consensus 215 ~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 215 LRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred HHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 9999999999999999999999999999999999999999999999999888999865
No 5
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=100.00 E-value=5.6e-50 Score=363.04 Aligned_cols=278 Identities=45% Similarity=0.855 Sum_probs=254.2
Q ss_pred CCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017392 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (372)
Q Consensus 74 ~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~g 153 (372)
...+|+++|+.+++.+.+++|||+.|+++...|++..+|..-|||||++|+++.+.+..++.++|+|..+.|++.++.+|
T Consensus 3 ~~~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 3 VDSIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cccccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 35689999999999998999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEcC--CCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCCCC
Q 017392 154 LENKDGLVVYDG--KGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVG 231 (372)
Q Consensus 154 i~~~~~vVvy~~--~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (372)
+++++.||||+. .|.+.|+|+||+|+.+||++|++|+||+++|+++|+|+++..... . ..
T Consensus 83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~~--------------p----~~ 144 (286)
T KOG1529|consen 83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVET--------------P----YS 144 (286)
T ss_pred CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccccC--------------C----CC
Confidence 999999999998 888899999999999999999999999999999999999886410 0 13
Q ss_pred CcceeeccCCccccCHHHHHHH-hhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHH
Q 017392 232 PTTFQTKFQPHLIWTLEQVKRN-IEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADEL 310 (372)
Q Consensus 232 ~~~~~~~~~~~~~is~~~l~~~-~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l 310 (372)
+..+...+++..+++.+++..+ .+.+++++||+|+.++|+|+.++++.++..||||||+|+|+.++.+.++..++++++
T Consensus 145 ~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl 224 (286)
T KOG1529|consen 145 PIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDL 224 (286)
T ss_pred CccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHH
Confidence 4455567888889999998766 677789999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHh-cCCCCCCcc
Q 017392 311 KKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWG-AQPDTPVET 370 (372)
Q Consensus 311 ~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~-~~~g~pv~~ 370 (372)
+.++.+.++..++|||+.|++|+.++..+.+|.+.| .+|++|||||.||. ..+.+++++
T Consensus 225 ~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~~~Pe~~~~~ 284 (286)
T KOG1529|consen 225 KHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWALRAPELLIEN 284 (286)
T ss_pred HHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhhcCchhhhhc
Confidence 999999999999999999999999999999999999 78999999999999 444455544
No 6
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.92 E-value=9.8e-25 Score=184.27 Aligned_cols=119 Identities=37% Similarity=0.544 Sum_probs=104.4
Q ss_pred ccHHHHHHhcC----CCCeEEEEeecCCCCCCCCchhhhhh------------CCCCCceecCcccccccCCCCCCCCCC
Q 017392 78 VSVDWLHANLR----EPDLKVLDASWYMPDEQRNPFQEYQV------------AHIPGALFFDVDGVADRTTNLPHMLPS 141 (372)
Q Consensus 78 is~~~l~~~l~----~~~~~iiDvR~~~~~~~r~~~~~y~~------------gHIPgAi~ip~~~l~~~~~~~~~~~p~ 141 (372)
||++||.++++ +++++|||+|+.+++. |+..++|.. ||||||+|+|+..+........+++|+
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~-~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~ 79 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGT-REARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPS 79 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccC-cchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCC
Confidence 68999999998 5689999999776654 555578988 999999999988766555556688999
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCC--CCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017392 142 EEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (372)
Q Consensus 142 ~~~~~~~l~~~gi~~~~~vVvy~~~--g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (372)
.++|+++++.+||+++++||+||+. ++..|+|+||+|+.+||++|++||||+.+|+
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 9999999999999999999999975 4667999999999999999999999999996
No 7
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.90 E-value=3.7e-23 Score=169.89 Aligned_cols=118 Identities=51% Similarity=0.959 Sum_probs=103.3
Q ss_pred cCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCc
Q 017392 245 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 324 (372)
Q Consensus 245 is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~ 324 (372)
++++++.+++++++++|||+|+..||.+....+...+..||||||+|+|+.++....+.+++++++++.+...+++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 36788888887667899999999999765444433445699999999999988776677889999999999999999999
Q ss_pred EEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhc
Q 017392 325 VVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 325 VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~ 362 (372)
||+||++|.+|..+++.|+.+||++|++|+||+.+|..
T Consensus 81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 99999999999999999999999999999999999974
No 8
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.89 E-value=7e-23 Score=172.97 Aligned_cols=117 Identities=37% Similarity=0.647 Sum_probs=98.6
Q ss_pred cCHHHHHHHhh----CCCcEEEeccCC--------cccCCCCCCCCC-CCCCccCCCccccccccccccCC----CCCCH
Q 017392 245 WTLEQVKRNIE----EGTYQLVDARSK--------ARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQ----TLLPA 307 (372)
Q Consensus 245 is~~~l~~~~~----~~~~~iIDvR~~--------~e~~G~~~~~~~-~~~~GhIpgAv~ip~~~l~~~~~----~~~~~ 307 (372)
+|++||.++++ +++++|||+|.. ++|.|..+++.. +.+.||||||+|+|+.++.+..+ .+++.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 46789999987 467999999987 889775544321 22459999999999988765433 35677
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCC---chhHHHHHHHHHHcCCCCceEecccHHHHh
Q 017392 308 DELKKRFEQEGISLEKPVVTACGT---GVTACILALGLNRLGKHDVAVYDGSWTEWG 361 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~---G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~ 361 (372)
++|++++.+.||+++++||+||++ |..|++++++|+.+|++||++|||||.+|.
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 899999999999999999999986 889999999999999999999999999996
No 9
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.88 E-value=5.9e-22 Score=163.80 Aligned_cols=122 Identities=54% Similarity=1.039 Sum_probs=102.5
Q ss_pred cccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 017392 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (372)
Q Consensus 77 ~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~ 156 (372)
+|++++|.+++.+++.+|||+|....+ .....+|..||||||+|+|+..+.........++++.++|.+.+..+++++
T Consensus 1 ~i~~~~l~~~l~~~~~~ivDvR~~~~~--~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd01448 1 LVSPDWLAEHLDDPDVRILDARWYLPD--RDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISN 78 (122)
T ss_pred CcCHHHHHHHhCCCCeEEEEeecCCCC--CchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 478999999998878999999832111 112268999999999999998875433345678899999999999999999
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCC
Q 017392 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (372)
Q Consensus 157 ~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g 200 (372)
+++||+||+.++.++++++++|+.+||++|++|+||+.+|..+|
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 99999999986567999999999999999999999999998765
No 10
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.4e-22 Score=160.27 Aligned_cols=115 Identities=26% Similarity=0.410 Sum_probs=98.7
Q ss_pred CccccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCC
Q 017392 241 PHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 320 (372)
Q Consensus 241 ~~~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~ 320 (372)
....++.++++++++.++.++||||+++|| ..||||.++|||+...... +. .+..+|.+.+.....+
T Consensus 21 ~~~sv~~~qvk~L~~~~~~~llDVRepeEf-----------k~gh~~~siNiPy~~~~~~-~~-l~~~eF~kqvg~~kp~ 87 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQHPDVVLLDVREPEEF-----------KQGHIPASINIPYMSRPGA-GA-LKNPEFLKQVGSSKPP 87 (136)
T ss_pred CcEEEEHHHHHHHhcCCCEEEEeecCHHHh-----------hccCCcceEeccccccccc-cc-cCCHHHHHHhcccCCC
Confidence 345678999999999888999999999999 8999999999999654332 22 3457777788777677
Q ss_pred CCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCc
Q 017392 321 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVE 369 (372)
Q Consensus 321 ~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~ 369 (372)
.|++|||+|.+|.||..|...|..+||+||.+|.|||.+|.++ +.|..
T Consensus 88 ~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k-~~~~~ 135 (136)
T KOG1530|consen 88 HDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDK-GGPKK 135 (136)
T ss_pred CCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHc-cCCCC
Confidence 7889999999999999999999999999999999999999999 67654
No 11
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.86 E-value=1.4e-22 Score=193.10 Aligned_cols=193 Identities=13% Similarity=0.108 Sum_probs=137.4
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 017392 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (372)
Q Consensus 76 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~ 155 (372)
++-+++++.+.+.+ ...++|+| ....|..+||||++++|...+. .|..+|....
T Consensus 14 ~i~~~~~~~~~l~~-~~~~~d~r---------g~i~~a~egIngtis~~~~~~~--------------~~~~~l~~~~-- 67 (314)
T PRK00142 14 PIEDPEAFRDEHLA-LCKSLGLK---------GRILVAEEGINGTVSGTIEQTE--------------AYMAWLKADP-- 67 (314)
T ss_pred cCCCHHHHHHHHHH-HHHHcCCe---------eEEEEcCCCceEEEEecHHHHH--------------HHHHHHhhCc--
Confidence 45677888887765 46789997 4578999999999999985432 3444444321
Q ss_pred CCCeE-EEEcCCCCc----hHHHHHHHHHHcCCC-ceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCC
Q 017392 156 NKDGL-VVYDGKGIF----SAARVWWMFRVFGHD-RVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQ 229 (372)
Q Consensus 156 ~~~~v-Vvy~~~g~~----~a~ra~~~L~~~G~~-~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (372)
...++ ++.+..... ...++...|..+|++ ++.- +. .
T Consensus 68 ~~~~i~l~~~~~~~~~f~~l~~~~~~eLv~~G~d~~v~~-------~~------~------------------------- 109 (314)
T PRK00142 68 RFADIRFKISEDDGHAFPRLSVKVRKEIVALGLDDDIDP-------LE------N------------------------- 109 (314)
T ss_pred CCCCceEEeccccCCCcccceeeeeeeeeecCCCCCCCc-------cc------c-------------------------
Confidence 12333 333331111 124555566667764 3321 11 0
Q ss_pred CCCcceeeccCCccccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHH
Q 017392 230 VGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADE 309 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~ 309 (372)
....++++++.+++.+++++|||||++.|| ..||||||+|+|+.++.+. ++.
T Consensus 110 -----------~~~~is~~el~~~l~~~~~vlIDVR~~~E~-----------~~GhI~GAi~ip~~~~~~~------~~~ 161 (314)
T PRK00142 110 -----------VGTYLKPKEVNELLDDPDVVFIDMRNDYEY-----------EIGHFENAIEPDIETFREF------PPW 161 (314)
T ss_pred -----------CCcccCHHHHHHHhcCCCeEEEECCCHHHH-----------hcCcCCCCEeCCHHHhhhh------HHH
Confidence 112367889999888888999999999999 7899999999999876431 122
Q ss_pred HHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcC
Q 017392 310 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 310 l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~ 363 (372)
+++ ..++.++++||+||.+|.||..++..|+.+||++|++|+||+.+|...
T Consensus 162 l~~---~~~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 162 VEE---NLDPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHH---hcCCCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 222 235678999999999999999999999999999999999999999876
No 12
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.86 E-value=7.4e-22 Score=158.93 Aligned_cols=104 Identities=30% Similarity=0.534 Sum_probs=92.3
Q ss_pred CHHHHHHHhh-CCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCc
Q 017392 246 TLEQVKRNIE-EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 324 (372)
Q Consensus 246 s~~~l~~~~~-~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~ 324 (372)
|++++.++++ +++.+|||+|++.|| ..||||||+|+|+.++.+. ...+++++++.+...+++++++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~-----------~~ghIpgA~~ip~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 68 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEEL-----------KTGKIPGAINIPLSSLPDA--LALSEEEFEKKYGFPKPSKDKE 68 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHH-----------hcCcCCCcEEechHHhhhh--hCCCHHHHHHHhcccCCCCCCe
Confidence 4678888887 667999999999999 7899999999999886542 3456788999998888899999
Q ss_pred EEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhc
Q 017392 325 VVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 325 VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~ 362 (372)
||+||++|.+|..+++.|+.+||+||++|+||+.+|.+
T Consensus 69 ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 69 LIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred EEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 99999999999999999999999999999999999963
No 13
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.86 E-value=1.6e-21 Score=161.14 Aligned_cols=116 Identities=24% Similarity=0.357 Sum_probs=97.5
Q ss_pred ccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccc----cCCCCCCHHHHHHHHHHcCC
Q 017392 244 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLD----ASQTLLPADELKKRFEQEGI 319 (372)
Q Consensus 244 ~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~----~~~~~~~~~~l~~~~~~~gi 319 (372)
+++++++.+.+.+++.+|||+|++.+|.+ ....+..||||||+|+|+.++.. ..+.+.+.+++++.+.+.++
T Consensus 1 ~i~~~~l~~~l~~~~~~ivDvR~~~~~~~----~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (122)
T cd01448 1 LVSPDWLAEHLDDPDVRILDARWYLPDRD----GRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGI 76 (122)
T ss_pred CcCHHHHHHHhCCCCeEEEEeecCCCCCc----hhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCC
Confidence 36789999998877789999999933311 00111689999999999988764 24678899999999999999
Q ss_pred CCCCcEEEEcCC-chhHHHHHHHHHHcCCCCceEecccHHHHhcC
Q 017392 320 SLEKPVVTACGT-GVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 320 ~~~~~VivyC~~-G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~ 363 (372)
+++++||+||++ |.+|..+++.|+.+||++|++|+|||.+|...
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~ 121 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAE 121 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhC
Confidence 999999999999 59999999999999999999999999999875
No 14
>PLN02160 thiosulfate sulfurtransferase
Probab=99.85 E-value=3.5e-21 Score=162.19 Aligned_cols=113 Identities=18% Similarity=0.302 Sum_probs=94.5
Q ss_pred cccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCc--cccccccccccCCCCCCHHHHHHHHHHcCCC
Q 017392 243 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGS--KCIPFPQMLDASQTLLPADELKKRFEQEGIS 320 (372)
Q Consensus 243 ~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgA--v~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~ 320 (372)
..++++++.+.+++ +.+|||||++.|| ..|||||| +|+|+..+. ....+++.+.+..+.. .++
T Consensus 15 ~~i~~~e~~~~~~~-~~~lIDVR~~~E~-----------~~ghIpgA~~iniP~~~~~-~~~~l~~~~~~~~~~~--~~~ 79 (136)
T PLN02160 15 VSVDVSQAKTLLQS-GHQYLDVRTQDEF-----------RRGHCEAAKIVNIPYMLNT-PQGRVKNQEFLEQVSS--LLN 79 (136)
T ss_pred eEeCHHHHHHHHhC-CCEEEECCCHHHH-----------hcCCCCCcceecccchhcC-cccccCCHHHHHHHHh--ccC
Confidence 35788999988875 4689999999999 68999999 899986653 3345666555554433 357
Q ss_pred CCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 321 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 321 ~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
++++||+||++|.||..++..|...||++|++|+|||.+|... |+|+++.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~-g~p~~~~ 129 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDH-SFPINQE 129 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhC-CCCcccc
Confidence 8899999999999999999999999999999999999999999 9999864
No 15
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.85 E-value=3.6e-21 Score=181.75 Aligned_cols=127 Identities=18% Similarity=0.287 Sum_probs=105.7
Q ss_pred cccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccC----CCCCCHHHHHHHHHHcC
Q 017392 243 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS----QTLLPADELKKRFEQEG 318 (372)
Q Consensus 243 ~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~----~~~~~~~~l~~~~~~~g 318 (372)
.+++++++.+++++++++|||+|+..++.|... ....++.||||||+|+|+..+.+.. ..+++++++++++.++|
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~-~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRD-VAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELG 83 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccc-hHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 578999999999988899999998655544211 1122378999999999998765533 24567899999999999
Q ss_pred CCCCCcEEEEcCCchh-HHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 319 ISLEKPVVTACGTGVT-ACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 319 i~~~~~VivyC~~G~r-a~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
++++++||+||.+|.+ ++.+++.|+.+||+||++|+|||.+|.++ |+|++++
T Consensus 84 i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~-g~p~~~~ 136 (281)
T PRK11493 84 VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRD-DLLLEEG 136 (281)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHc-CCCccCC
Confidence 9999999999998764 67888999999999999999999999998 9999875
No 16
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.85 E-value=1.2e-20 Score=163.50 Aligned_cols=125 Identities=16% Similarity=0.227 Sum_probs=93.1
Q ss_pred ccCCccccCHHHHHHHhhCCCcEEEeccCCc----cc-CCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHH
Q 017392 238 KFQPHLIWTLEQVKRNIEEGTYQLVDARSKA----RF-DGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKK 312 (372)
Q Consensus 238 ~~~~~~~is~~~l~~~~~~~~~~iIDvR~~~----e~-~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~ 312 (372)
.......|+++|+.+++++++.+|||||+++ || .|.... ....||||||+|+|+..+..-.. ...+.+.+
T Consensus 31 ~~~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~---~~~~~HIPGAv~ip~~~~~~l~~--~~~~~~~~ 105 (162)
T TIGR03865 31 TLKGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWR---DEPRLNIPGSLWLPNTGYGNLAP--AWQAYFRR 105 (162)
T ss_pred ccCCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceec---cccCCCCCCcEEecccCCCCCCC--chhHHHHH
Confidence 3445568999999999988889999999876 34 111000 00236999999999743211111 11234667
Q ss_pred HHHHcCC-CCCCcEEEEcCCch-hHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCC
Q 017392 313 RFEQEGI-SLEKPVVTACGTGV-TACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 368 (372)
Q Consensus 313 ~~~~~gi-~~~~~VivyC~~G~-ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv 368 (372)
.+.+.+. +++++||+||++|. +|..+++.|+.+||+||++|+|||.+|..+ |+|+
T Consensus 106 ~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~a-G~Pv 162 (162)
T TIGR03865 106 GLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAA-GLPL 162 (162)
T ss_pred HHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHc-CCCC
Confidence 7766544 79999999999996 788999999999999999999999999999 8986
No 17
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.84 E-value=5.4e-21 Score=152.78 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=82.9
Q ss_pred ccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCC
Q 017392 244 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 323 (372)
Q Consensus 244 ~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~ 323 (372)
.++++++.+++++++.+|||||++.|| ..||||||+|+|+.++... .+.+.+.+. +++++
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~-----------~~ghi~gA~~ip~~~~~~~------~~~~~~~~~---~~~~~ 62 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEY-----------DIGHFKGAVNPDVDTFREF------PFWLDENLD---LLKGK 62 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhh-----------hcCEeccccCCCcccHhHh------HHHHHhhhh---hcCCC
Confidence 478899999888778999999999999 7899999999999775321 122222222 47889
Q ss_pred cEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhc
Q 017392 324 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 324 ~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~ 362 (372)
+||+||++|.||..++..|+.+||++|++|+||+.+|..
T Consensus 63 ~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 63 KVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred EEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 999999999999999999999999999999999999963
No 18
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.84 E-value=2.1e-20 Score=162.00 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=91.9
Q ss_pred CCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCch---hhhhh---------CCCCCceecCcccccccCCCCCCCCCC
Q 017392 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPF---QEYQV---------AHIPGALFFDVDGVADRTTNLPHMLPS 141 (372)
Q Consensus 74 ~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~---~~y~~---------gHIPgAi~ip~~~l~~~~~~~~~~~p~ 141 (372)
....|+++|+++++++++++|||||. +. .+|.. +|||||+|+|+..+... .-+.
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR~--------~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l------~~~~ 99 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVYP--------RPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNL------APAW 99 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCC--------CccccccccccceeccccCCCCCCcEEecccCCCCC------CCch
Confidence 35789999999999888899999972 21 13433 59999999996533221 0133
Q ss_pred HHHHHHHHHHcCC-CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCc
Q 017392 142 EEAFAAAVSALGL-ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (372)
Q Consensus 142 ~~~~~~~l~~~gi-~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv 203 (372)
.+.|.+.+..+++ +++++||+||..|+.++.+++++|+.+||++|++|+||+.+|+++|+|+
T Consensus 100 ~~~~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 100 QAYFRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 4457777877664 7999999999988767999999999999999999999999999999985
No 19
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.84 E-value=1e-20 Score=152.28 Aligned_cols=104 Identities=21% Similarity=0.308 Sum_probs=90.7
Q ss_pred cHHHHHHhcC-CCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 017392 79 SVDWLHANLR-EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 157 (372)
Q Consensus 79 s~~~l~~~l~-~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~~ 157 (372)
|++++.++++ +++++|||+| +..+|..||||||+|+|+..+.+ ...++++.|.+.++..+++++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR---------~~~e~~~ghIpgA~~ip~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 66 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVR---------EPEELKTGKIPGAINIPLSSLPD------ALALSEEEFEKKYGFPKPSKD 66 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECC---------CHHHHhcCcCCCcEEechHHhhh------hhCCCHHHHHHHhcccCCCCC
Confidence 6789999988 6679999996 44889999999999999988643 234667889999999999999
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017392 158 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 158 ~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
++||+||..|. ++.+++++|+.+||++|++|+||+.+|.+
T Consensus 67 ~~ivv~c~~g~-~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 67 KELIFYCKAGV-RSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CeEEEECCCcH-HHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 99999999766 48999999999999999999999999963
No 20
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.83 E-value=1.7e-20 Score=154.02 Aligned_cols=106 Identities=27% Similarity=0.482 Sum_probs=92.4
Q ss_pred ccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhh-----------CCCCCceecCcccccccCCCCCCCCCCHHHHH
Q 017392 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV-----------AHIPGALFFDVDGVADRTTNLPHMLPSEEAFA 146 (372)
Q Consensus 78 is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~-----------gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~ 146 (372)
|++++|.+++++++++|||+| +..+|.. ||||||+|+|+..+.... ..++++++|.
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR---------~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~----~~~~~~~~~~ 67 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDAR---------SPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED----GTFKSPEELR 67 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCC---------CHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC----CCcCCHHHHH
Confidence 578999999987679999997 3466665 999999999998765422 5678899999
Q ss_pred HHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017392 147 AAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (372)
Q Consensus 147 ~~l~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (372)
+.+..++++++++||+||..| .++.++++.|+.+||++|++|+||+.+|.
T Consensus 68 ~~~~~~~~~~~~~iv~yc~~g-~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 68 ALFAALGITPDKPVIVYCGSG-VTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred HHHHHcCCCCCCCEEEECCcH-HHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 999999999999999999975 46999999999999999999999999996
No 21
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.83 E-value=1.9e-20 Score=151.80 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=83.2
Q ss_pred ccCHHHHHHHhhCC-CcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCC
Q 017392 244 IWTLEQVKRNIEEG-TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 322 (372)
Q Consensus 244 ~is~~~l~~~~~~~-~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~ 322 (372)
.++++++.+.++++ +.+|||+|++.|| ..||||||+|+|+.++. ..+...+.+++
T Consensus 11 ~i~~~~l~~~~~~~~~~~liDvR~~~e~-----------~~ghIpgainip~~~l~-------------~~~~~l~~~~~ 66 (109)
T cd01533 11 SVSADELAALQARGAPLVVLDGRRFDEY-----------RKMTIPGSVSCPGAELV-------------LRVGELAPDPR 66 (109)
T ss_pred cCCHHHHHHHHhcCCCcEEEeCCCHHHH-----------hcCcCCCceeCCHHHHH-------------HHHHhcCCCCC
Confidence 57899999988755 5789999999999 78999999999996543 23444456778
Q ss_pred CcEEEEcCCchhHHHHHHHHHHcCCCC-ceEecccHHHHhcC
Q 017392 323 KPVVTACGTGVTACILALGLNRLGKHD-VAVYDGSWTEWGAQ 363 (372)
Q Consensus 323 ~~VivyC~~G~ra~~~~~~L~~~G~~~-v~~~~GG~~~W~~~ 363 (372)
++||+||++|.||..++..|+.+||+| |++++||+.+|...
T Consensus 67 ~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~ 108 (109)
T cd01533 67 TPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLA 108 (109)
T ss_pred CeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhc
Confidence 999999999999999999999999988 99999999999876
No 22
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.82 E-value=2.4e-20 Score=155.63 Aligned_cols=105 Identities=24% Similarity=0.393 Sum_probs=82.9
Q ss_pred cCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccC---------CC--------CCCH
Q 017392 245 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS---------QT--------LLPA 307 (372)
Q Consensus 245 is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~---------~~--------~~~~ 307 (372)
||++|+.++++ ++.+|||||++.|| ..||||||+|||+..+.... +. ....
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~-----------~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEF-----------FEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVS 68 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHh-----------ccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHh
Confidence 46789998887 56899999999999 78999999999996543211 00 0011
Q ss_pred HHHHHHHHH---cCCCCCCcEEEEcC-CchhHHHHHHHHHHcCCCCceEecccHHHHhc
Q 017392 308 DELKKRFEQ---EGISLEKPVVTACG-TGVTACILALGLNRLGKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 308 ~~l~~~~~~---~gi~~~~~VivyC~-~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~ 362 (372)
.++++.+++ .+++++++||+||+ +|.||+.+++.|+.+|| +|++++||+.+|..
T Consensus 69 ~~~~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 69 GKLKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hhHHHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 234444433 48999999999997 68999999999999999 69999999999975
No 23
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.82 E-value=4e-20 Score=177.56 Aligned_cols=120 Identities=22% Similarity=0.353 Sum_probs=103.9
Q ss_pred CCccccCHHHHHHHhhCCCcEEEeccC---------CcccCCCCCCCCCCCCCccCCCccccccccccccC----CCCCC
Q 017392 240 QPHLIWTLEQVKRNIEEGTYQLVDARS---------KARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS----QTLLP 306 (372)
Q Consensus 240 ~~~~~is~~~l~~~~~~~~~~iIDvR~---------~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~----~~~~~ 306 (372)
++..+|++++|.+++++++.+|||+|. ..+| ..||||||+|+|+.++.+.. ..+++
T Consensus 19 ~~~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y-----------~~gHIPgAi~i~~~~~~~~~~~~~~~lp~ 87 (320)
T PLN02723 19 TNEPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEY-----------QVAHIPGALFFDLDGISDRTTDLPHMLPS 87 (320)
T ss_pred cCCceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHH-----------HhccCCCCeecCHHHhcCCCCCcCCCCCC
Confidence 355789999999999888899999972 2456 78999999999998776532 35678
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEcCCch-hHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 307 ADELKKRFEQEGISLEKPVVTACGTGV-TACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 307 ~~~l~~~~~~~gi~~~~~VivyC~~G~-ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
.++|++.+.++|++++++|||||..|. .+.++++.|+.+||++|++|+||+.+|..+ |+|++++
T Consensus 88 ~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~-G~pv~~~ 152 (320)
T PLN02723 88 EEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRAS-GYDVESS 152 (320)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHc-CCCcccC
Confidence 899999999999999999999998875 466888999999999999999999999999 9999864
No 24
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.82 E-value=2.9e-20 Score=147.93 Aligned_cols=97 Identities=20% Similarity=0.369 Sum_probs=85.0
Q ss_pred ccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCC
Q 017392 244 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 323 (372)
Q Consensus 244 ~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~ 323 (372)
.++++++.+.++++ .+|||+|+++|| ..||||||+|+|+.++.... ..+++++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR~~~e~-----------~~~hi~ga~~ip~~~~~~~~---------------~~~~~~~ 55 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIREPDEY-----------LRERIPGARLVPLSQLESEG---------------LPLVGAN 55 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECCCHHHH-----------HhCcCCCCEECChhHhcccc---------------cCCCCCC
Confidence 36789999888765 899999999999 78999999999998764321 1367889
Q ss_pred cEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCC
Q 017392 324 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 368 (372)
Q Consensus 324 ~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv 368 (372)
+||+||++|.+|+.++..|+++||.+|++|+||+.+|... ++|+
T Consensus 56 ~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~-~~~~ 99 (99)
T cd01527 56 AIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAA-GLPV 99 (99)
T ss_pred cEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHC-cCCC
Confidence 9999999999999999999999999999999999999998 8875
No 25
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.82 E-value=4.9e-20 Score=149.37 Aligned_cols=99 Identities=26% Similarity=0.267 Sum_probs=84.7
Q ss_pred CCcccHHHHHHhcCCC-CeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017392 75 EPVVSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (372)
Q Consensus 75 ~~~is~~~l~~~l~~~-~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~g 153 (372)
.+.|++++|.++++++ +.+|||+| +..+|..||||||+|+|+..+ ...+..++
T Consensus 9 ~~~i~~~~l~~~~~~~~~~~liDvR---------~~~e~~~ghIpgainip~~~l-----------------~~~~~~l~ 62 (109)
T cd01533 9 TPSVSADELAALQARGAPLVVLDGR---------RFDEYRKMTIPGSVSCPGAEL-----------------VLRVGELA 62 (109)
T ss_pred CCcCCHHHHHHHHhcCCCcEEEeCC---------CHHHHhcCcCCCceeCCHHHH-----------------HHHHHhcC
Confidence 3579999999998765 58899996 458999999999999998654 34667777
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCCc-eEEecCCHHHHHhCC
Q 017392 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDR-VWVLDGGLPRWRASG 200 (372)
Q Consensus 154 i~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~-v~~L~GG~~~W~~~g 200 (372)
.+++++||+||..|.+ +.++++.|+.+||++ |+.|+||+.+|+.+|
T Consensus 63 ~~~~~~ivv~C~~G~r-s~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 63 PDPRTPIVVNCAGRTR-SIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCCCCeEEEECCCCch-HHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 7788999999997764 888999999999988 999999999999875
No 26
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.81 E-value=5.4e-20 Score=189.47 Aligned_cols=117 Identities=22% Similarity=0.304 Sum_probs=105.3
Q ss_pred cccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCcccccccccccc----CCCCCCHHHHHHHHHHcC
Q 017392 243 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA----SQTLLPADELKKRFEQEG 318 (372)
Q Consensus 243 ~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~----~~~~~~~~~l~~~~~~~g 318 (372)
.+|+++|+.+++++++++|||+|++++| ..||||||+|+|+..+... .+.+++.+++++.+.++|
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY-----------~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lG 77 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARY-----------EAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELG 77 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHH-----------HhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcC
Confidence 5799999999999888999999999999 7899999999998764322 356778899999999999
Q ss_pred CCCCCcEEEEcCCc-hhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 319 ISLEKPVVTACGTG-VTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 319 i~~~~~VivyC~~G-~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
++++++||+||++| .+|++++|.|+.+|+++|++|||||.+|..+ |+|++++
T Consensus 78 I~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~a-g~p~~~~ 130 (610)
T PRK09629 78 HNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQ-ALPLSTD 130 (610)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHc-CCccccC
Confidence 99999999999977 5888999999999999999999999999999 8998765
No 27
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.81 E-value=7.4e-20 Score=146.20 Aligned_cols=100 Identities=24% Similarity=0.339 Sum_probs=79.9
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 017392 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (372)
Q Consensus 76 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~ 155 (372)
..|+++++.+++++++++||||| + ..||+.||||||+|+|+..+... .+.+... ...+
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR--------~-~~e~~~ghi~gA~~ip~~~~~~~----------~~~~~~~---~~~~ 59 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVR--------N-DYEYDIGHFKGAVNPDVDTFREF----------PFWLDEN---LDLL 59 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcC--------C-hhhhhcCEeccccCCCcccHhHh----------HHHHHhh---hhhc
Confidence 56899999999988789999996 4 48999999999999999876431 0112111 1236
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017392 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 156 ~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
++++||+||..|.+ +..+++.|+.+||++|++|+||+.+|.+
T Consensus 60 ~~~~ivvyC~~G~r-s~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 60 KGKKVLMYCTGGIR-CEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred CCCEEEEECCCchh-HHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 88999999997765 7777888999999999999999999963
No 28
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.81 E-value=1.1e-19 Score=151.66 Aligned_cols=110 Identities=23% Similarity=0.359 Sum_probs=82.1
Q ss_pred ccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCC--------------CCCCCCCC--
Q 017392 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT--------------NLPHMLPS-- 141 (372)
Q Consensus 78 is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~--------------~~~~~~p~-- 141 (372)
||++||++++. ++++||||| + ..+|..||||||+|+|+..+..... ..+.++++
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR--------~-~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVR--------S-PKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGK 70 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECC--------C-HHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhh
Confidence 68999999997 578999996 4 4899999999999999965422100 00111221
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017392 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 142 ~~~~~~~l~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
.+++.+.+...+++++++||+||..++.+|.+++|+|+.+|| +|++|+||+.+|++
T Consensus 71 ~~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 71 LKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 122333333358999999999998555569999999999999 69999999999974
No 29
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.81 E-value=1e-19 Score=147.28 Aligned_cols=101 Identities=26% Similarity=0.357 Sum_probs=88.5
Q ss_pred ccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCC
Q 017392 244 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 323 (372)
Q Consensus 244 ~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~ 323 (372)
.++++++.+.+++++.+|||+|++.|| ..||||||+|+|+..+ .+.+.. +++++
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~~~e~-----------~~ghi~gA~~ip~~~l-------------~~~~~~--~~~~~ 59 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRDPQSF-----------AMGHAPGAFHLTNDSL-------------GAFMRQ--ADFDT 59 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCCHHHH-----------hcCCCCCCeECCHHHH-------------HHHHHh--cCCCC
Confidence 478899999887777899999999999 7899999999998543 333443 56889
Q ss_pred cEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 324 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 324 ~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
+|++||.+|.+|..++..|+..||+||++++|||.+|... ++|++.+
T Consensus 60 ~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~-~~~~~~~ 106 (108)
T PRK00162 60 PVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRT-FPAEVAS 106 (108)
T ss_pred CEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhc-CCCccCC
Confidence 9999999999999999999999999999999999999999 8999864
No 30
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.80 E-value=8.8e-20 Score=150.94 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=87.6
Q ss_pred cccCHHHHHHHhhC-CCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCC
Q 017392 243 LIWTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 321 (372)
Q Consensus 243 ~~is~~~l~~~~~~-~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~ 321 (372)
..++++++.+.+++ .+.+|||+|+++|| ..||||||+|+|+..+.+....++.. .+...++++
T Consensus 8 ~~is~~el~~~~~~~~~~~ivDvR~~~e~-----------~~~hIpgai~ip~~~~~~~~~~~~~~-----~~~~~~~~~ 71 (122)
T cd01526 8 ERVSVKDYKNILQAGKKHVLLDVRPKVHF-----------EICRLPEAINIPLSELLSKAAELKSL-----QELPLDNDK 71 (122)
T ss_pred cccCHHHHHHHHhCCCCeEEEEcCCHHHh-----------hcccCCCCeEccHHHHhhhhhhhhhh-----hhcccccCC
Confidence 35789999988876 56889999999999 78999999999998875432221111 233446789
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHcCC-CCceEecccHHHHhcCC
Q 017392 322 EKPVVTACGTGVTACILALGLNRLGK-HDVAVYDGSWTEWGAQP 364 (372)
Q Consensus 322 ~~~VivyC~~G~ra~~~~~~L~~~G~-~~v~~~~GG~~~W~~~~ 364 (372)
+++||+||++|.||..++..|+.+|| ++|+.|+||+.+|..+.
T Consensus 72 ~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~ 115 (122)
T cd01526 72 DSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKV 115 (122)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHh
Confidence 99999999999999999999999999 79999999999999873
No 31
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.80 E-value=7.9e-19 Score=166.77 Aligned_cols=191 Identities=17% Similarity=0.242 Sum_probs=124.6
Q ss_pred CeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCC--------------CCCCCCCC---HHHHHHHHHHcC
Q 017392 91 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT--------------NLPHMLPS---EEAFAAAVSALG 153 (372)
Q Consensus 91 ~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~--------------~~~~~~p~---~~~~~~~l~~~g 153 (372)
+..||||| +| .||..||||||+|+|+....+... ..+..+.. ++.+.+++...
T Consensus 2 ~~~liDVR--------sp-~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~- 71 (311)
T TIGR03167 2 FDPLIDVR--------SP-AEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFA- 71 (311)
T ss_pred CCEEEECC--------CH-HHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhc-
Confidence 46899995 55 899999999999999964321100 00000000 11223333322
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCCCCCc
Q 017392 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPT 233 (372)
Q Consensus 154 i~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (372)
+++..||+||..++.+|.+++|.|+.+|| +|++|+||+.+|+..+.+.....+ .+.
T Consensus 72 -~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~----------------------~~~ 127 (311)
T TIGR03167 72 -DGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEELP----------------------QPF 127 (311)
T ss_pred -CCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhccC----------------------CCC
Confidence 33445999997666679999999999999 699999999999998876554321 111
Q ss_pred ceeeccCCccccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCC-CccccccccccccCCCCCCHHHHHH
Q 017392 234 TFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVP-GSKCIPFPQMLDASQTLLPADELKK 312 (372)
Q Consensus 234 ~~~~~~~~~~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIp-gAv~ip~~~l~~~~~~~~~~~~l~~ 312 (372)
.+.. +.....+...++.+.+.+.+.+|||+|+..+|.|. ..|||| |.. |-...+ ...|..
T Consensus 128 ~~~v-l~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs--------~fG~~~~~~q--psq~~f--------e~~L~~ 188 (311)
T TIGR03167 128 PLIV-LGGMTGSGKTELLHALANAGAQVLDLEGLANHRGS--------SFGALGLGPQ--PSQKRF--------ENALAE 188 (311)
T ss_pred ceec-cCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCc--------ccCCCCCCCC--CchHHH--------HHHHHH
Confidence 2222 33445688899999998888999999999999654 358888 421 211111 123333
Q ss_pred HHHHcCCCCCCcEEEEcCCchhHH
Q 017392 313 RFEQEGISLEKPVVTACGTGVTAC 336 (372)
Q Consensus 313 ~~~~~gi~~~~~VivyC~~G~ra~ 336 (372)
.+. .++++++|++-|.+...+.
T Consensus 189 ~l~--~~~~~~~i~~e~es~~ig~ 210 (311)
T TIGR03167 189 ALR--RLDPGRPIFVEDESRRIGR 210 (311)
T ss_pred HHH--hCCCCceEEEEeCchhhcc
Confidence 343 3577789999998765433
No 32
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.80 E-value=2.2e-19 Score=141.47 Aligned_cols=98 Identities=33% Similarity=0.596 Sum_probs=84.9
Q ss_pred CCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchhHH
Q 017392 257 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTAC 336 (372)
Q Consensus 257 ~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~G~ra~ 336 (372)
++++|||+|++.|| ..||||||+|+|+..+......+. ..++++.+...+++++++||+||.+|.+|.
T Consensus 3 ~~~~ivDvR~~~e~-----------~~~hi~ga~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~ 70 (100)
T smart00450 3 EKVVLLDVRSPEEY-----------EGGHIPGAVNIPLSELLDRRGELD-ILEFEELLKRLGLDKDKPVVVYCRSGNRSA 70 (100)
T ss_pred CCEEEEECCCHHHh-----------ccCCCCCceeCCHHHhccCCCCcC-HHHHHHHHHHcCCCCCCeEEEEeCCCcHHH
Confidence 46899999999999 789999999999988765543332 236777777788999999999999999999
Q ss_pred HHHHHHHHcCCCCceEecccHHHHhcCCCCC
Q 017392 337 ILALGLNRLGKHDVAVYDGSWTEWGAQPDTP 367 (372)
Q Consensus 337 ~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~p 367 (372)
.+++.|+.+|+++|++|+||+.+|... +.|
T Consensus 71 ~~~~~l~~~G~~~v~~l~GG~~~w~~~-~~~ 100 (100)
T smart00450 71 KAAWLLRELGFKNVYLLDGGYKEWSAA-GPP 100 (100)
T ss_pred HHHHHHHHcCCCceEEecCCHHHHHhc-CCC
Confidence 999999999999999999999999988 554
No 33
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.79 E-value=3.9e-19 Score=142.82 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=79.8
Q ss_pred ccHHHHHHhcCCC--CeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 017392 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (372)
Q Consensus 78 is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~ 155 (372)
||++||+++++++ +++|||+| + ..+|..||||||+|+|+..+...... ...+|..+.|.. .
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR--------~-~~e~~~ghIpgA~~ip~~~~~~~~~~-~~~~~~~~~~~~-------~ 63 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIR--------S-SPDFRRGHIEGSINIPFSSVFLKEGE-LEQLPTVPRLEN-------Y 63 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECC--------C-HHHHhCCccCCCEeCCHHHhcccccc-cccccchHHHHh-------h
Confidence 6899999999763 68999996 4 47899999999999999876432111 133444444442 2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017392 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (372)
Q Consensus 156 ~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (372)
.+++||+||..|.+ +.++++.|+.+||++|++|+||+.+|+
T Consensus 64 ~~~~vv~~c~~g~~-s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 64 KGKIIVIVSHSHKH-AALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred cCCeEEEEeCCCcc-HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 47899999997764 888999999999999999999999996
No 34
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.79 E-value=2.9e-19 Score=143.54 Aligned_cols=99 Identities=27% Similarity=0.358 Sum_probs=79.7
Q ss_pred cCHHHHHHHhhCC--CcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCC---CCCCHHHHHHHHHHcCC
Q 017392 245 WTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQ---TLLPADELKKRFEQEGI 319 (372)
Q Consensus 245 is~~~l~~~~~~~--~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~---~~~~~~~l~~~~~~~gi 319 (372)
||++|+.+++.++ +++|||+|++.|| ..||||||+|+|+..+..... .+...+++ ..
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~-----------~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~----~~--- 62 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDF-----------RRGHIEGSINIPFSSVFLKEGELEQLPTVPRL----EN--- 62 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHH-----------hCCccCCCEeCCHHHhcccccccccccchHHH----Hh---
Confidence 4688999988753 6899999999999 789999999999987653322 12222222 21
Q ss_pred CCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHh
Q 017392 320 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWG 361 (372)
Q Consensus 320 ~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~ 361 (372)
..+++||+||.+|.+|..+++.|+.+||++|++|+||+.+|+
T Consensus 63 ~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 63 YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 247899999999999999999999999999999999999995
No 35
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=5.9e-19 Score=164.37 Aligned_cols=121 Identities=21% Similarity=0.372 Sum_probs=104.2
Q ss_pred cCCccccCHHHHHHHhhCC-----CcEEEeccCC--cccCCCCCCCCCCCCCccCCCccccccccccccC----CCCCCH
Q 017392 239 FQPHLIWTLEQVKRNIEEG-----TYQLVDARSK--ARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS----QTLLPA 307 (372)
Q Consensus 239 ~~~~~~is~~~l~~~~~~~-----~~~iIDvR~~--~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~----~~~~~~ 307 (372)
....++|+++++.++++++ +..+++++.. .+| ..||||||+++++....+.. +.++++
T Consensus 7 ~~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y-----------~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~ 75 (285)
T COG2897 7 MSSEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEY-----------LEGHIPGAVFFDWEADLSDPVPLPHMLPSP 75 (285)
T ss_pred cCcceEEcHHHHHhhccccccccCceEEEeCCcchHHHH-----------HhccCCCCEecCHHHhhcCCCCCCCCCCCH
Confidence 3456789999999999866 4555555555 566 79999999999999876543 578999
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCC-chhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 308 DELKKRFEQEGISLEKPVVTACGT-GVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~-G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
++|.+++.++||+.|.+||+|... +..|++++|+|+.+|++||++|||||.+|.++ |+|++++
T Consensus 76 e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~-g~p~~~~ 139 (285)
T COG2897 76 EQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAA-GLPLETE 139 (285)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHc-CCCccCC
Confidence 999999999999999999999965 46788999999999999999999999999999 9999865
No 36
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.79 E-value=4.1e-19 Score=140.32 Aligned_cols=93 Identities=26% Similarity=0.301 Sum_probs=76.2
Q ss_pred cCHHHHHHHhhCC--CcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCC
Q 017392 245 WTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 322 (372)
Q Consensus 245 is~~~l~~~~~~~--~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~ 322 (372)
|+++++.+.+.++ +++|||+|++.|| ..||||||+|+|+.++..... .....++
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~-----------~~ghipga~~ip~~~l~~~~~-------------~~~~~~~ 56 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEY-----------EAGHLPGFRHTPGGQLVQETD-------------HFAPVRG 56 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHH-----------HhCCCCCcEeCCHHHHHHHHH-------------HhcccCC
Confidence 4678888888654 5789999999999 789999999999876543211 1111247
Q ss_pred CcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhc
Q 017392 323 KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 323 ~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~ 362 (372)
++||+||.+|.||..++..|+.+||+ |++|+||+.+|..
T Consensus 57 ~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 57 ARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred CeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 89999999999999999999999998 9999999999974
No 37
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.79 E-value=2.3e-18 Score=165.83 Aligned_cols=168 Identities=20% Similarity=0.213 Sum_probs=114.3
Q ss_pred cHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccC--------------CCCCCCCCCHHH
Q 017392 79 SVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT--------------TNLPHMLPSEEA 144 (372)
Q Consensus 79 s~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~--------------~~~~~~~p~~~~ 144 (372)
...++.+.+. .+++||||| +| .||..||||||+|+|+....+.. ...++.+++.+.
T Consensus 4 ~~~~~~~~~~-~~~~lIDVR--------sp-~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l 73 (345)
T PRK11784 4 DAQDFRALFL-NDTPLIDVR--------SP-IEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNI 73 (345)
T ss_pred cHHHHHHHHh-CCCEEEECC--------CH-HHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhH
Confidence 3556666654 378999996 45 89999999999999996432110 013344555332
Q ss_pred HHHHHHHcCC--CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHH
Q 017392 145 FAAAVSALGL--ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAI 222 (372)
Q Consensus 145 ~~~~l~~~gi--~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~ 222 (372)
.......++. +++++||+||..|+.+|.+++|.|+.+|| +|++|+||+.+|++.+.+.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~~~-------------- 138 (345)
T PRK11784 74 AAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEEAP-------------- 138 (345)
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhhhc--------------
Confidence 2222222222 47889999997666679999999999999 699999999999988765443211
Q ss_pred HHhhcCCCCCcceeeccCCccccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCC
Q 017392 223 EKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPG 288 (372)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpg 288 (372)
.+..+. .+.........++...+.+.+.++||.|+..+|.|. ..|+|++
T Consensus 139 --------~~~~~i-vl~G~TGsGKT~iL~~L~~~~~~vlDlE~~aehrGS--------~fG~~~~ 187 (345)
T PRK11784 139 --------AQFPLV-VLGGNTGSGKTELLQALANAGAQVLDLEGLANHRGS--------SFGRLGG 187 (345)
T ss_pred --------ccCceE-ecCCCCcccHHHHHHHHHhcCCeEEECCchhhhccc--------cccCCCC
Confidence 111221 123334466788888888778899999999999765 4666665
No 38
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.78 E-value=1.2e-19 Score=145.17 Aligned_cols=102 Identities=21% Similarity=0.394 Sum_probs=81.4
Q ss_pred cCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCc
Q 017392 245 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 324 (372)
Q Consensus 245 is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~ 324 (372)
++++++.+++.+++.+|||+|++.+|. ..||||||+|+|+..+...... + ..+...+++++++
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~----------~~ghIpga~~ip~~~~~~~~~~----~---~~~~~~~~~~~~~ 63 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELE----------RTGMIPGAFHAPRGMLEFWADP----D---SPYHKPAFAEDKP 63 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHH----------hcCCCCCcEEcccchhhhhcCc----c---ccccccCCCCCCe
Confidence 467888888877778999999998872 4799999999998665321100 0 0111225789999
Q ss_pred EEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcC
Q 017392 325 VVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 325 VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~ 363 (372)
||+||++|.+|..+++.|+.+||++|++|+||+.+|...
T Consensus 64 ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~ 102 (103)
T cd01447 64 FVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEA 102 (103)
T ss_pred EEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhc
Confidence 999999999999999999999999999999999999765
No 39
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.78 E-value=8.8e-19 Score=139.34 Aligned_cols=97 Identities=22% Similarity=0.337 Sum_probs=82.1
Q ss_pred cccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 017392 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (372)
Q Consensus 77 ~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~ 156 (372)
.|++++|.++++++ .+|||+| +.++|..||||||+|+|+..+... ...+++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR---------~~~e~~~~hi~ga~~ip~~~~~~~-------------------~~~~~~ 53 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIR---------EPDEYLRERIPGARLVPLSQLESE-------------------GLPLVG 53 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECC---------CHHHHHhCcCCCCEECChhHhccc-------------------ccCCCC
Confidence 58999999998875 8999996 458899999999999998876431 113567
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCc
Q 017392 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (372)
Q Consensus 157 ~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv 203 (372)
+++||+||..|.+ ++.++..|+.+||++|++|+||+.+|+..|+|+
T Consensus 54 ~~~iv~~c~~g~~-s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 54 ANAIIFHCRSGMR-TQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 8899999997764 888999999999999999999999999998874
No 40
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.78 E-value=2.6e-18 Score=168.62 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=88.4
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 017392 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (372)
Q Consensus 76 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~ 155 (372)
..|+++++.+++++ +.+|||+| +.++|..||||||+|+|+..+ .+.+..+.++
T Consensus 3 ~~is~~el~~~l~~-~~~ivDvR---------~~~e~~~ghIpgAi~ip~~~l-----------------~~~~~~~~~~ 55 (376)
T PRK08762 3 REISPAEARARAAQ-GAVLIDVR---------EAHERASGQAEGALRIPRGFL-----------------ELRIETHLPD 55 (376)
T ss_pred ceeCHHHHHHHHhC-CCEEEECC---------CHHHHhCCcCCCCEECCHHHH-----------------HHHHhhhcCC
Confidence 35899999999976 58999996 458999999999999998654 3345555667
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCC
Q 017392 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 207 (372)
Q Consensus 156 ~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~ 207 (372)
++++||+||..|. ++.++++.|+.+||++|++|+||+.+|++.|+|++...
T Consensus 56 ~~~~IvvyC~~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 106 (376)
T PRK08762 56 RDREIVLICASGT-RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPR 106 (376)
T ss_pred CCCeEEEEcCCCc-HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCcccccc
Confidence 8999999999765 48899999999999999999999999999999987654
No 41
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.78 E-value=2.4e-19 Score=145.23 Aligned_cols=105 Identities=31% Similarity=0.603 Sum_probs=85.4
Q ss_pred CHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHc--CCCCCC
Q 017392 246 TLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE--GISLEK 323 (372)
Q Consensus 246 s~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~--gi~~~~ 323 (372)
|++|+++++++++++|||+|++.+| ..||||||+|+|+..+ .........+.+...+... ++++++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~-----------~~~hI~ga~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEY-----------ERGHIPGAVNIPFPSL-DPDEPSLSEDKLDEFLKELGKKIDKDK 68 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHH-----------HHSBETTEEEEEGGGG-SSSSSBCHHHHHHHHHHHHTHGSTTTS
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHH-----------HcCCCCCCcccccccc-ccccccccccccccccccccccccccc
Confidence 5789999997788999999999999 7899999999999877 3333344555555544443 468889
Q ss_pred cEEEEcCCchhHHHHHHH-----HHHcCCCCceEecccHHHHhc
Q 017392 324 PVVTACGTGVTACILALG-----LNRLGKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 324 ~VivyC~~G~ra~~~~~~-----L~~~G~~~v~~~~GG~~~W~~ 362 (372)
+||+||.+|.++..++.. |+.+|+++|++|+|||.+|.+
T Consensus 69 ~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 69 DIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred cceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 999999999888776665 888999999999999999975
No 42
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.78 E-value=8.5e-19 Score=140.05 Aligned_cols=96 Identities=19% Similarity=0.345 Sum_probs=79.6
Q ss_pred cCHHHHHHHhhCC--CcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCC
Q 017392 245 WTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 322 (372)
Q Consensus 245 is~~~l~~~~~~~--~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~ 322 (372)
++++++.++++.+ +.+|||+|+++|| ..+|||||+|+|+.++.+. ...+.. .+++
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~-----------~~~hI~ga~~ip~~~~~~~----------~~~~~~--~~~~ 58 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEEL-----------EIAFLPGFLHLPMSEIPER----------SKELDS--DNPD 58 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHH-----------hcCcCCCCEecCHHHHHHH----------HHHhcc--cCCC
Confidence 5678888888764 5789999999999 6899999999998765421 111221 2568
Q ss_pred CcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcC
Q 017392 323 KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 323 ~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~ 363 (372)
++||+||++|.+|..+++.|..+||++|++|+||+.+|...
T Consensus 59 ~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 59 KDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred CeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 99999999999999999999999999999999999999865
No 43
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.77 E-value=8.5e-19 Score=139.73 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=79.6
Q ss_pred cCHHHHHHHhhC-CCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCC
Q 017392 245 WTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 323 (372)
Q Consensus 245 is~~~l~~~~~~-~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~ 323 (372)
++++++.+.+++ ++.+|||||++.|| ..||||||+|+|+.++.... + +...+.+. .+++++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~-----------~~ghi~ga~~ip~~~~~~~~--~---~~~~~~~~--~~~~~~ 62 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDY-----------ERWKIDGENNTPYFDPYFDF--L---EIEEDILD--QLPDDQ 62 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHH-----------hhcccCCCcccccccchHHH--H---HhhHHHHh--hCCCCC
Confidence 467888888876 45899999999999 78999999999997764321 0 01122233 367889
Q ss_pred cEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHh
Q 017392 324 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWG 361 (372)
Q Consensus 324 ~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~ 361 (372)
+||+||.+|.||..++..|+.+||+ ++.|.||+.+|.
T Consensus 63 ~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 63 EVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred eEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 9999999999999999999999998 999999999996
No 44
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.77 E-value=1.6e-18 Score=140.23 Aligned_cols=103 Identities=22% Similarity=0.314 Sum_probs=86.8
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 017392 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (372)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi 154 (372)
.+.+++++|.+++++++.+|||+| + ..+|..||||||+|+|+.. |.+++..+
T Consensus 4 ~~~is~~el~~~l~~~~~~ivDvR--------~-~~e~~~ghi~gA~~ip~~~-----------------l~~~~~~~-- 55 (108)
T PRK00162 4 FECINVEQAHQKLQEGGAVLVDIR--------D-PQSFAMGHAPGAFHLTNDS-----------------LGAFMRQA-- 55 (108)
T ss_pred ccccCHHHHHHHHHcCCCEEEEcC--------C-HHHHhcCCCCCCeECCHHH-----------------HHHHHHhc--
Confidence 456999999999977678999996 4 4899999999999999754 44455554
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccC
Q 017392 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESS 206 (372)
Q Consensus 155 ~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~ 206 (372)
+++.++|+||..|.+ +..++..|+..||++|++|+||+.+|++.+.|++..
T Consensus 56 ~~~~~ivv~c~~g~~-s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 56 DFDTPVMVMCYHGNS-SQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred CCCCCEEEEeCCCCC-HHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 567899999987764 788888999999999999999999999999998754
No 45
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.77 E-value=7.1e-19 Score=142.80 Aligned_cols=98 Identities=26% Similarity=0.325 Sum_probs=83.2
Q ss_pred ccCHHHHHHHhhC--CCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCC
Q 017392 244 IWTLEQVKRNIEE--GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 321 (372)
Q Consensus 244 ~is~~~l~~~~~~--~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~ 321 (372)
.++++++.+++.+ ++.+|||+|++.+| ..||||||+|+|+..+... .+ .++++
T Consensus 9 ~~s~~el~~~l~~~~~~~~iiDvR~~~e~-----------~~ghIpgA~~ip~~~l~~~------------~~--~~i~~ 63 (110)
T cd01521 9 ETDCWDVAIALKNGKPDFVLVDVRSAEAY-----------ARGHVPGAINLPHREICEN------------AT--AKLDK 63 (110)
T ss_pred ecCHHHHHHHHHcCCCCEEEEECCCHHHH-----------hcCCCCCCEeCCHHHhhhH------------hh--hcCCC
Confidence 4788999998875 35899999999999 7899999999998775321 11 25789
Q ss_pred CCcEEEEcCCc--hhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCC
Q 017392 322 EKPVVTACGTG--VTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 368 (372)
Q Consensus 322 ~~~VivyC~~G--~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv 368 (372)
+++||+||++| .+|..+++.|+.+||+ |++|+||+.+|... |+|+
T Consensus 64 ~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~-g~~~ 110 (110)
T cd01521 64 EKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKRE-GYAT 110 (110)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHC-CCCC
Confidence 99999999987 4899999999999995 99999999999998 8875
No 46
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.77 E-value=8e-19 Score=144.15 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=85.4
Q ss_pred cCHHHHHHHhhC-CCcEEEeccCCcccCCCCCCCCCCCC-CccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCC
Q 017392 245 WTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIR-SGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 322 (372)
Q Consensus 245 is~~~l~~~~~~-~~~~iIDvR~~~e~~G~~~~~~~~~~-~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~ 322 (372)
+|++++.+++++ ++.+|||+|++.|| . .||||||+|+|+.++..... . ..+...+... ++++
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~-----------~~~ghIpgA~~ip~~~~~~~~~---~-~~~~~~l~~~-~~~~ 64 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEW-----------KFVGGVPDAVHVAWQVYPDMEI---N-PNFLAELEEK-VGKD 64 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHH-----------hcccCCCCceecchhhcccccc---C-HHHHHHHHhh-CCCC
Confidence 467888888876 57899999999999 7 89999999999988764211 1 2333333332 3788
Q ss_pred CcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcCCC
Q 017392 323 KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPD 365 (372)
Q Consensus 323 ~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g 365 (372)
++||+||++|.+|..++..|+.+||++|+.|.||+.+|....|
T Consensus 65 ~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~~~ 107 (117)
T cd01522 65 RPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAG 107 (117)
T ss_pred CeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCCCCC
Confidence 9999999999999999999999999999999999999977644
No 47
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.77 E-value=5.3e-19 Score=139.58 Aligned_cols=92 Identities=22% Similarity=0.422 Sum_probs=79.3
Q ss_pred cCHHHHHHHhhC-CCcEEEeccCCcccCCCCCCCCCCCCC--ccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCC
Q 017392 245 WTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRS--GHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 321 (372)
Q Consensus 245 is~~~l~~~~~~-~~~~iIDvR~~~e~~G~~~~~~~~~~~--GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~ 321 (372)
++++++.+.+++ .+.+|||+|++.+| .. ||||||+|+|+.++. +.+. .+++
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~-----------~~~~~hi~ga~~ip~~~~~-------------~~~~--~~~~ 55 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASY-----------AALPDHIPGAIHLDEDSLD-------------DWLG--DLDR 55 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHH-----------hcccCCCCCCeeCCHHHHH-------------HHHh--hcCC
Confidence 567888888776 46899999999999 56 999999999997543 2233 3678
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhc
Q 017392 322 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 322 ~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~ 362 (372)
+++||+||.+|.+|..++..|+.+||++|++|+||+.+|..
T Consensus 56 ~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~~ 96 (96)
T cd01444 56 DRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWRR 96 (96)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhcC
Confidence 99999999999999999999999999999999999999963
No 48
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.77 E-value=1.3e-18 Score=137.51 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=74.0
Q ss_pred ccHHHHHHhcCCC--CeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 017392 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (372)
Q Consensus 78 is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~ 155 (372)
||+++|.+++.++ +++||||| + ..+|..||||||+|+|+..+.. .+..+...
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR--------~-~~e~~~ghipga~~ip~~~l~~-----------------~~~~~~~~ 54 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVR--------T-PEEYEAGHLPGFRHTPGGQLVQ-----------------ETDHFAPV 54 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECC--------C-HHHHHhCCCCCcEeCCHHHHHH-----------------HHHHhccc
Confidence 6889999998764 58899996 4 5899999999999999876432 11222223
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017392 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 156 ~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
++++||+||..|.+ +..+++.|+.+||+ |++|+||+.+|.+
T Consensus 55 ~~~~iv~~c~~G~r-s~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 55 RGARIVLADDDGVR-ADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred CCCeEEEECCCCCh-HHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 56889999998775 67778889999998 9999999999973
No 49
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.77 E-value=2.1e-18 Score=140.08 Aligned_cols=101 Identities=23% Similarity=0.357 Sum_probs=83.4
Q ss_pred CCcccHHHHHHhcCC--CCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 017392 75 EPVVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (372)
Q Consensus 75 ~~~is~~~l~~~l~~--~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~ 152 (372)
...|++++|.+++.+ ++++|||+| + ..+|..||||||+|+|...+.. .. ..
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR--------~-~~e~~~ghIpgA~~ip~~~l~~----------------~~--~~ 59 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVR--------S-AEAYARGHVPGAINLPHREICE----------------NA--TA 59 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECC--------C-HHHHhcCCCCCCEeCCHHHhhh----------------Hh--hh
Confidence 356899999999975 358999996 4 4899999999999999876532 01 12
Q ss_pred CCCCCCeEEEEcCCCC-chHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCc
Q 017392 153 GLENKDGLVVYDGKGI-FSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (372)
Q Consensus 153 gi~~~~~vVvy~~~g~-~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv 203 (372)
+++++++||+||..+. ..+.++++.|+.+||+ +++|+||+.+|+.+|+|+
T Consensus 60 ~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 60 KLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred cCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 5678999999998764 4689999999999995 999999999999999875
No 50
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.76 E-value=1.9e-18 Score=138.06 Aligned_cols=102 Identities=21% Similarity=0.339 Sum_probs=79.0
Q ss_pred ccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhh-hhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 017392 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY-QVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (372)
Q Consensus 78 is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y-~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~ 156 (372)
|+++++.+++++++.+|||+| ++ .+| ..||||||+|+|+..+....... ..+...++++
T Consensus 1 is~~el~~~~~~~~~~iiDvR--------~~-~~~~~~ghIpga~~ip~~~~~~~~~~~-----------~~~~~~~~~~ 60 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVR--------DP-RELERTGMIPGAFHAPRGMLEFWADPD-----------SPYHKPAFAE 60 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECC--------CH-HHHHhcCCCCCcEEcccchhhhhcCcc-----------ccccccCCCC
Confidence 688999999987789999996 34 566 67999999999986653210000 0112235788
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCC
Q 017392 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (372)
Q Consensus 157 ~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g 200 (372)
+++||+||..|. ++.+++++|+.+||++|++|+||+.+|..+|
T Consensus 61 ~~~ivv~c~~g~-~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 61 DKPFVFYCASGW-RSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCeEEEEcCCCC-cHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 999999998765 4889999999999999999999999998664
No 51
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.76 E-value=2.3e-18 Score=134.66 Aligned_cols=88 Identities=23% Similarity=0.462 Sum_probs=75.8
Q ss_pred CHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCcE
Q 017392 246 TLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPV 325 (372)
Q Consensus 246 s~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~V 325 (372)
+++++.+++ .++.++||+|++++| ..||||||+|+|+.++. ..+. .++++++|
T Consensus 2 ~~~e~~~~~-~~~~~iiD~R~~~~~-----------~~~hipgA~~ip~~~~~-------------~~~~--~~~~~~~v 54 (90)
T cd01524 2 QWHELDNYR-ADGVTLIDVRTPQEF-----------EKGHIKGAINIPLDELR-------------DRLN--ELPKDKEI 54 (90)
T ss_pred CHHHHHHHh-cCCCEEEECCCHHHH-----------hcCCCCCCEeCCHHHHH-------------HHHH--hcCCCCcE
Confidence 567888887 456889999999999 78999999999986542 2233 36788999
Q ss_pred EEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHh
Q 017392 326 VTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWG 361 (372)
Q Consensus 326 ivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~ 361 (372)
|+||.+|.++..++..|+.+|+ +|++|+||+.+|.
T Consensus 55 vl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 55 IVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred EEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 9999999999999999999999 8999999999996
No 52
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.76 E-value=5e-18 Score=133.70 Aligned_cols=99 Identities=32% Similarity=0.613 Sum_probs=81.4
Q ss_pred CCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCC
Q 017392 89 EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGI 168 (372)
Q Consensus 89 ~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~~~~vVvy~~~g~ 168 (372)
+++++|||+| +..+|..||||||+|+|+..+....... . ...+.+.+...++.++++||+||..+.
T Consensus 2 ~~~~~ivDvR---------~~~e~~~~hi~ga~~i~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~iv~~c~~g~ 67 (100)
T smart00450 2 DEKVVLLDVR---------SPEEYEGGHIPGAVNIPLSELLDRRGEL----D-ILEFEELLKRLGLDKDKPVVVYCRSGN 67 (100)
T ss_pred CCCEEEEECC---------CHHHhccCCCCCceeCCHHHhccCCCCc----C-HHHHHHHHHHcCCCCCCeEEEEeCCCc
Confidence 3578999997 4589999999999999998765432211 1 126777888889999999999997554
Q ss_pred chHHHHHHHHHHcCCCceEEecCCHHHHHhCCCC
Q 017392 169 FSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202 (372)
Q Consensus 169 ~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~p 202 (372)
++.++++.|+.+|+++|++|+||+.+|..++.|
T Consensus 68 -~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 68 -RSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred -HHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 589999999999999999999999999988754
No 53
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.76 E-value=2.6e-18 Score=135.97 Aligned_cols=87 Identities=30% Similarity=0.479 Sum_probs=73.1
Q ss_pred CCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchhH
Q 017392 256 EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTA 335 (372)
Q Consensus 256 ~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~G~ra 335 (372)
+++.+|||+|++.+| ..||||||+|+|+.++.. ..++++. +. .++++++||+||.+|.+|
T Consensus 10 ~~~~~iiDvR~~~~~-----------~~~hIpgA~~ip~~~~~~------~~~~~~~-~~--~~~~~~~ivv~c~~g~~s 69 (96)
T cd01529 10 EPGTALLDVRAEDEY-----------AAGHLPGKRSIPGAALVL------RSQELQA-LE--APGRATRYVLTCDGSLLA 69 (96)
T ss_pred CCCeEEEeCCCHHHH-----------cCCCCCCcEeCCHHHhcC------CHHHHHH-hh--cCCCCCCEEEEeCChHHH
Confidence 456899999999999 789999999999876532 2344443 43 257889999999999999
Q ss_pred HHHHHHHHHcCCCCceEecccHHHHhc
Q 017392 336 CILALGLNRLGKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 336 ~~~~~~L~~~G~~~v~~~~GG~~~W~~ 362 (372)
..+++.|+.+||+||++|+||+.+|.+
T Consensus 70 ~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 70 RFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred HHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 999999999999999999999999964
No 54
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.75 E-value=2.3e-18 Score=142.19 Aligned_cols=97 Identities=13% Similarity=0.264 Sum_probs=78.3
Q ss_pred cCHHHHHHHhhC------CCcEEEeccCCcccCCCCCCCCCCCCCccCCCcccccccc-ccccCCCCCCHHHHHHHHHHc
Q 017392 245 WTLEQVKRNIEE------GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQ-MLDASQTLLPADELKKRFEQE 317 (372)
Q Consensus 245 is~~~l~~~~~~------~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~-l~~~~~~~~~~~~l~~~~~~~ 317 (372)
|+++++.+.+.+ ++++|||||++.|| ..||||||+|+|+.+ +... +.+...+.
T Consensus 4 Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~-----------~~ghI~gA~~ip~~~~l~~~---------~~~~~~~~ 63 (121)
T cd01530 4 ISPETLARLLQGKYDNFFDKYIIIDCRFPYEY-----------NGGHIKGAVNLSTKDELEEF---------FLDKPGVA 63 (121)
T ss_pred cCHHHHHHHHhcccccCCCCEEEEECCCHHHH-----------hCCcCCCCEeCCcHHHHHHH---------HHHhhccc
Confidence 688999888865 36899999999999 789999999999862 3211 11111123
Q ss_pred CCCCCCcEEEEcC-CchhHHHHHHHHHHc------------CCCCceEecccHHHHh
Q 017392 318 GISLEKPVVTACG-TGVTACILALGLNRL------------GKHDVAVYDGSWTEWG 361 (372)
Q Consensus 318 gi~~~~~VivyC~-~G~ra~~~~~~L~~~------------G~~~v~~~~GG~~~W~ 361 (372)
+++++++||+||+ +|.||..+++.|+.+ ||.+|++|+||+.+|-
T Consensus 64 ~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 64 SKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred ccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 5789999999997 999999999999884 9999999999999984
No 55
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.75 E-value=4.6e-18 Score=135.79 Aligned_cols=94 Identities=22% Similarity=0.363 Sum_probs=77.5
Q ss_pred ccHHHHHHhcCCC--CeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC-
Q 017392 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL- 154 (372)
Q Consensus 78 is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi- 154 (372)
|++++|.+++..+ +++|||+| +.++|..+|||||+|+|+..+.+ ++..+..
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR---------~~~e~~~~hI~ga~~ip~~~~~~-----------------~~~~~~~~ 55 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVR---------EPEELEIAFLPGFLHLPMSEIPE-----------------RSKELDSD 55 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECC---------CHHHHhcCcCCCCEecCHHHHHH-----------------HHHHhccc
Confidence 7899999999864 68999996 45899999999999999876532 2333322
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017392 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 155 ~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
+++++||+||..|. +|+++++.|...||++|++|+||+.+|..
T Consensus 56 ~~~~~vv~~c~~g~-rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 56 NPDKDIVVLCHHGG-RSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred CCCCeEEEEeCCCc-hHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 56889999999775 48888889999999999999999999975
No 56
>PLN02160 thiosulfate sulfurtransferase
Probab=99.75 E-value=1.4e-17 Score=140.30 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=89.1
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCc--eecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 017392 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGA--LFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (372)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgA--i~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~ 152 (372)
-..|+++++.+++++ +.+||||| +..+|..|||||| +|+|+..+... ..+.+.+ |...+..
T Consensus 14 ~~~i~~~e~~~~~~~-~~~lIDVR---------~~~E~~~ghIpgA~~iniP~~~~~~~-----~~l~~~~-~~~~~~~- 76 (136)
T PLN02160 14 VVSVDVSQAKTLLQS-GHQYLDVR---------TQDEFRRGHCEAAKIVNIPYMLNTPQ-----GRVKNQE-FLEQVSS- 76 (136)
T ss_pred eeEeCHHHHHHHHhC-CCEEEECC---------CHHHHhcCCCCCcceecccchhcCcc-----cccCCHH-HHHHHHh-
Confidence 456999999999876 46899996 4589999999999 89997544211 1222333 2222333
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCC
Q 017392 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 207 (372)
Q Consensus 153 gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~ 207 (372)
.++++++||+||..|.+ |..++..|...||++|++|.||+.+|.++|+|+.+..
T Consensus 77 ~~~~~~~IivyC~sG~R-S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 77 LLNPADDILVGCQSGAR-SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred ccCCCCcEEEECCCcHH-HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 24678899999997764 8899999999999999999999999999999998764
No 57
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.75 E-value=9.2e-18 Score=135.40 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=98.4
Q ss_pred CCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017392 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (372)
Q Consensus 74 ~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~g 153 (372)
....++.++++.+++.++.++|||| +| +||..||||.+||||+..... ..+++ ..+|.+-++..-
T Consensus 21 ~~~sv~~~qvk~L~~~~~~~llDVR--------ep-eEfk~gh~~~siNiPy~~~~~-----~~~l~-~~eF~kqvg~~k 85 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQHPDVVLLDVR--------EP-EEFKQGHIPASINIPYMSRPG-----AGALK-NPEFLKQVGSSK 85 (136)
T ss_pred CcEEEEHHHHHHHhcCCCEEEEeec--------CH-HHhhccCCcceEecccccccc-----ccccC-CHHHHHHhcccC
Confidence 4567999999999999889999995 66 899999999999999965433 23444 346888888888
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcc
Q 017392 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVE 204 (372)
Q Consensus 154 i~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~ 204 (372)
...++.|||||..|.+ +..|...|..+||+||.++.|||.+|.+.++|..
T Consensus 86 p~~d~eiIf~C~SG~R-s~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 86 PPHDKEIIFGCASGVR-SLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred CCCCCcEEEEeccCcc-hhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 8888899999998876 8899999999999999999999999999988753
No 58
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.74 E-value=6.4e-18 Score=136.77 Aligned_cols=105 Identities=26% Similarity=0.518 Sum_probs=80.2
Q ss_pred cHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC--CCC
Q 017392 79 SVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG--LEN 156 (372)
Q Consensus 79 s~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~g--i~~ 156 (372)
||+||++++++++++|||+| +..+|..||||||+|+|+..+. ........+.+...+...+ +++
T Consensus 1 s~~el~~~l~~~~~~liD~R---------~~~~~~~~hI~ga~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 66 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVR---------SPEEYERGHIPGAVNIPFPSLD-----PDEPSLSEDKLDEFLKELGKKIDK 66 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEES---------SHHHHHHSBETTEEEEEGGGGS-----SSSSBCHHHHHHHHHHHHTHGSTT
T ss_pred CHHHHHhhhhCCCeEEEEeC---------CHHHHHcCCCCCCccccccccc-----cccccccccccccccccccccccc
Confidence 68999999977789999997 5689999999999999997651 1223344455555555544 478
Q ss_pred CCeEEEEcCCCCchHHHH-----HHHHHHcCCCceEEecCCHHHHHh
Q 017392 157 KDGLVVYDGKGIFSAARV-----WWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 157 ~~~vVvy~~~g~~~a~ra-----~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
++.||+||..+.. +..+ +|+|..+||++|++|+||+.+|.+
T Consensus 67 ~~~iv~yc~~~~~-~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 67 DKDIVFYCSSGWR-SGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp TSEEEEEESSSCH-HHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred cccceeeeecccc-cchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 8899999965543 3333 445999999999999999999986
No 59
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.74 E-value=7.6e-18 Score=139.34 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=86.7
Q ss_pred CCCcccHHHHHHhcCC-CCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHH-HHHH
Q 017392 74 KEPVVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAA-AVSA 151 (372)
Q Consensus 74 ~~~~is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~-~l~~ 151 (372)
....|+++++.+++++ ++++|||+| +..+|..||||||+|+|+..+.+... .+.. ++..
T Consensus 6 ~~~~is~~el~~~~~~~~~~~ivDvR---------~~~e~~~~hIpgai~ip~~~~~~~~~----------~~~~~~~~~ 66 (122)
T cd01526 6 PEERVSVKDYKNILQAGKKHVLLDVR---------PKVHFEICRLPEAINIPLSELLSKAA----------ELKSLQELP 66 (122)
T ss_pred cccccCHHHHHHHHhCCCCeEEEEcC---------CHHHhhcccCCCCeEccHHHHhhhhh----------hhhhhhhcc
Confidence 4457999999999876 578999996 45899999999999999987644211 1111 2344
Q ss_pred cCCCCCCeEEEEcCCCCchHHHHHHHHHHcCC-CceEEecCCHHHHHhCCCC
Q 017392 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGH-DRVWVLDGGLPRWRASGYD 202 (372)
Q Consensus 152 ~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~-~~v~~L~GG~~~W~~~g~p 202 (372)
.+++++++||+||..|. ++..++..|+.+|| ++|++|+||+.+|..+..+
T Consensus 67 ~~~~~~~~ivv~C~~G~-rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 67 LDNDKDSPIYVVCRRGN-DSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred cccCCCCcEEEECCCCC-cHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 56788999999999776 48889999999999 6999999999999876543
No 60
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.74 E-value=8.4e-18 Score=138.86 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=77.7
Q ss_pred cccHHHHHHhcCC------CCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcc-cccccCCCCCCCCCCHHHHHHHH
Q 017392 77 VVSVDWLHANLRE------PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVD-GVADRTTNLPHMLPSEEAFAAAV 149 (372)
Q Consensus 77 ~is~~~l~~~l~~------~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~-~l~~~~~~~~~~~p~~~~~~~~l 149 (372)
.||++++.+++.+ ++++||||| + ..+|..||||||+|+|+. .+.. .+....
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR--------~-~~e~~~ghI~gA~~ip~~~~l~~-------------~~~~~~ 60 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCR--------F-PYEYNGGHIKGAVNLSTKDELEE-------------FFLDKP 60 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECC--------C-HHHHhCCcCCCCEeCCcHHHHHH-------------HHHHhh
Confidence 4899999999875 368999996 4 479999999999999986 3322 111111
Q ss_pred HHcCCCCCCeEEEEcCCCCchHHHHHHHHHHc------------CCCceEEecCCHHHHH
Q 017392 150 SALGLENKDGLVVYDGKGIFSAARVWWMFRVF------------GHDRVWVLDGGLPRWR 197 (372)
Q Consensus 150 ~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~------------G~~~v~~L~GG~~~W~ 197 (372)
..++++++++||+||..++.+++++++.|+.+ ||.+|++|+||+.+|.
T Consensus 61 ~~~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 61 GVASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred cccccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 23467899999999973344589999999985 9999999999999984
No 61
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.73 E-value=1.8e-17 Score=132.00 Aligned_cols=98 Identities=23% Similarity=0.170 Sum_probs=76.7
Q ss_pred ccHHHHHHhcCC-CCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 017392 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (372)
Q Consensus 78 is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~ 156 (372)
|++++|.+++++ ++++||||| + .++|+.||||||+|+|+..+... .+ +...+.+.. +++
T Consensus 1 is~~el~~~l~~~~~~~liDvR--------~-~~e~~~ghi~ga~~ip~~~~~~~------~~---~~~~~~~~~--~~~ 60 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVR--------N-ESDYERWKIDGENNTPYFDPYFD------FL---EIEEDILDQ--LPD 60 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeC--------C-HHHHhhcccCCCcccccccchHH------HH---HhhHHHHhh--CCC
Confidence 678999998876 468999996 4 48999999999999999875431 00 001223333 357
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017392 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (372)
Q Consensus 157 ~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (372)
+++||+||..|.+ +..++..|+..||+ ++.|.||+.+|.
T Consensus 61 ~~~ivv~C~~G~r-s~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 61 DQEVTVICAKEGS-SQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCeEEEEcCCCCc-HHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 8899999998764 88899999999998 999999999996
No 62
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.73 E-value=1.2e-17 Score=142.15 Aligned_cols=87 Identities=26% Similarity=0.433 Sum_probs=76.9
Q ss_pred CcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchhHHH
Q 017392 258 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACI 337 (372)
Q Consensus 258 ~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~G~ra~~ 337 (372)
+++|||+|++.+| +.||||||+|+|. ++|.+.+.+ ++++++||+||.+|.+|..
T Consensus 11 ~~~ivDvR~~~e~-----------~~gHIpgAi~~~~-------------~~l~~~l~~--l~~~~~vVv~c~~g~~a~~ 64 (145)
T cd01535 11 QTAVVDVTASANY-----------VKRHIPGAWWVLR-------------AQLAQALEK--LPAAERYVLTCGSSLLARF 64 (145)
T ss_pred CeEEEECCCHHHH-----------HcCCCCCceeCCH-------------HHHHHHHHh--cCCCCCEEEEeCCChHHHH
Confidence 4899999999999 7999999999976 345555664 4567899999999999999
Q ss_pred HHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 338 LALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 338 ~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
+++.|+..|+++|++|+||+.+|... |+|++++
T Consensus 65 aa~~L~~~G~~~v~~L~GG~~aW~~~-g~pl~~~ 97 (145)
T cd01535 65 AAADLAALTVKPVFVLEGGTAAWIAA-GLPVESG 97 (145)
T ss_pred HHHHHHHcCCcCeEEecCcHHHHHHC-CCCcccC
Confidence 99999999999999999999999999 9999865
No 63
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.72 E-value=2.3e-17 Score=128.91 Aligned_cols=89 Identities=22% Similarity=0.345 Sum_probs=73.9
Q ss_pred ccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 017392 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 157 (372)
Q Consensus 78 is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~~ 157 (372)
++++|+.++++ ++.+|||+| +.++|..||||||+|+|+..+ ...+.. ++++
T Consensus 1 ~~~~e~~~~~~-~~~~iiD~R---------~~~~~~~~hipgA~~ip~~~~-----------------~~~~~~--~~~~ 51 (90)
T cd01524 1 VQWHELDNYRA-DGVTLIDVR---------TPQEFEKGHIKGAINIPLDEL-----------------RDRLNE--LPKD 51 (90)
T ss_pred CCHHHHHHHhc-CCCEEEECC---------CHHHHhcCCCCCCEeCCHHHH-----------------HHHHHh--cCCC
Confidence 47889999884 478899996 458999999999999997654 334443 4678
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017392 158 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (372)
Q Consensus 158 ~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (372)
++||+||..|. ++..++..|+.+|+ +|++|+||+.+|+
T Consensus 52 ~~vvl~c~~g~-~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 52 KEIIVYCAVGL-RGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CcEEEEcCCCh-hHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 89999999764 48888999999999 8999999999996
No 64
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.71 E-value=2.8e-17 Score=129.95 Aligned_cols=94 Identities=26% Similarity=0.385 Sum_probs=72.2
Q ss_pred HHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCe
Q 017392 80 VDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDG 159 (372)
Q Consensus 80 ~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~~~~ 159 (372)
++||.+. +++++|||+| + ..+|..||||||+|+|+..+.. ..+.++. +.. ++++++
T Consensus 3 ~~~l~~~--~~~~~iiDvR--------~-~~~~~~~hIpgA~~ip~~~~~~----------~~~~~~~-~~~--~~~~~~ 58 (96)
T cd01529 3 ADWLGEH--EPGTALLDVR--------A-EDEYAAGHLPGKRSIPGAALVL----------RSQELQA-LEA--PGRATR 58 (96)
T ss_pred hHHHhcC--CCCeEEEeCC--------C-HHHHcCCCCCCcEeCCHHHhcC----------CHHHHHH-hhc--CCCCCC
Confidence 4566653 4579999996 4 4799999999999999876432 2334433 332 467889
Q ss_pred EEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017392 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 160 vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
||+||..|.+ +.++++.|+.+||++|++|+||+.+|++
T Consensus 59 ivv~c~~g~~-s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 59 YVLTCDGSLL-ARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred EEEEeCChHH-HHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999997654 7777888999999999999999999963
No 65
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.71 E-value=2.7e-17 Score=129.79 Aligned_cols=91 Identities=33% Similarity=0.467 Sum_probs=77.0
Q ss_pred ccHHHHHHhcCC-CCeEEEEeecCCCCCCCCchhhhhh--CCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 017392 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQV--AHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (372)
Q Consensus 78 is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~~y~~--gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi 154 (372)
|+++++.+++++ .+++|||+| +..+|.. ||||||+|+|+..+. +++.. +
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR---------~~~e~~~~~~hi~ga~~ip~~~~~-----------------~~~~~--~ 53 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVR---------DPASYAALPDHIPGAIHLDEDSLD-----------------DWLGD--L 53 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECC---------CHHHHhcccCCCCCCeeCCHHHHH-----------------HHHhh--c
Confidence 788999998876 569999996 4479999 999999999987643 23333 4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017392 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (372)
Q Consensus 155 ~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (372)
+++++||+||..|. ++.++++.|+.+||++|++|+||+.+|+
T Consensus 54 ~~~~~ivv~c~~g~-~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 54 DRDRPVVVYCYHGN-SSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred CCCCCEEEEeCCCC-hHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 68899999999654 5899999999999999999999999996
No 66
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.70 E-value=4.6e-17 Score=132.78 Aligned_cols=99 Identities=25% Similarity=0.371 Sum_probs=78.1
Q ss_pred ccCHHHHHHHhhC--CCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCC
Q 017392 244 IWTLEQVKRNIEE--GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 321 (372)
Q Consensus 244 ~is~~~l~~~~~~--~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~ 321 (372)
.|+++++.+++.. ++.+|||+|++ || ..||||||+|+|+..+.. ++.++....++++
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~-----------~~~hi~gA~~ip~~~l~~---------~~~~~~~~~~~~~ 61 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DY-----------AGGHIKGSWHYPSTRFKA---------QLNQLVQLLSGSK 61 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-cc-----------CCCcCCCCEecCHHHHhh---------CHHHHHHHHhcCC
Confidence 4788999998866 45789999999 99 789999999999987643 2233333345678
Q ss_pred CCcEEEEcC-CchhHHHHHHHHHH--------cCCCCceEecccHHHHhcC
Q 017392 322 EKPVVTACG-TGVTACILALGLNR--------LGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 322 ~~~VivyC~-~G~ra~~~~~~L~~--------~G~~~v~~~~GG~~~W~~~ 363 (372)
+++||+||. +|.|+..++..|.+ .|+.||++|+||+.+|.+.
T Consensus 62 ~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 62 KDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred CCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 899999998 77888877666543 4999999999999999864
No 67
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.70 E-value=4.1e-17 Score=133.97 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=83.2
Q ss_pred ccHHHHHHhcCC-CCeEEEEeecCCCCCCCCchhhhh-hCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 017392 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQ-VAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (372)
Q Consensus 78 is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~~y~-~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~ 155 (372)
||++++++++++ ++.+|||+| +..+|+ .||||||+|+|+..+.. ..++ +.|...+..+. +
T Consensus 1 is~~el~~~l~~~~~~~vIDvR---------~~~e~~~~ghIpgA~~ip~~~~~~-------~~~~-~~~~~~l~~~~-~ 62 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVR---------TEAEWKFVGGVPDAVHVAWQVYPD-------MEIN-PNFLAELEEKV-G 62 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECC---------CHHHHhcccCCCCceecchhhccc-------cccC-HHHHHHHHhhC-C
Confidence 688999999987 579999996 458999 99999999999987643 1122 23544555544 6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhC
Q 017392 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (372)
Q Consensus 156 ~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~ 199 (372)
++++||+||..|. ++.++++.|+.+||++|+.|.||+.+|+..
T Consensus 63 ~~~~ivv~C~~G~-rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 63 KDRPVLLLCRSGN-RSIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred CCCeEEEEcCCCc-cHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 7899999998765 588999999999999999999999999764
No 68
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.70 E-value=5.1e-17 Score=132.51 Aligned_cols=101 Identities=23% Similarity=0.320 Sum_probs=77.1
Q ss_pred CcccHHHHHHhcCC--CCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017392 76 PVVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (372)
Q Consensus 76 ~~is~~~l~~~l~~--~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~g 153 (372)
..|++++|++++.+ ++++|||+| +. +|..||||||+|+|+..+.. .+.......+
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR---------~~-e~~~~hi~gA~~ip~~~l~~-------------~~~~~~~~~~ 58 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVR---------DE-DYAGGHIKGSWHYPSTRFKA-------------QLNQLVQLLS 58 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcC---------Cc-ccCCCcCCCCEecCHHHHhh-------------CHHHHHHHHh
Confidence 46899999999876 468899996 45 89999999999999987643 2344444556
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHH--------cCCCceEEecCCHHHHHhC
Q 017392 154 LENKDGLVVYDGKGIFSAARVWWMFRV--------FGHDRVWVLDGGLPRWRAS 199 (372)
Q Consensus 154 i~~~~~vVvy~~~g~~~a~ra~~~L~~--------~G~~~v~~L~GG~~~W~~~ 199 (372)
.+++++||+||..++.++..++..|.. .|+.+|++|+||+.+|++.
T Consensus 59 ~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 59 GSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred cCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 677889999998443345555544432 4999999999999999863
No 69
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.70 E-value=1.8e-17 Score=130.11 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=69.5
Q ss_pred HhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCc
Q 017392 253 NIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTG 332 (372)
Q Consensus 253 ~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~G 332 (372)
++++++++|||+|++.|| ..||||||+|+|+..+.... ... -.+++++||+||.+|
T Consensus 5 ~~~~~~~~liDvR~~~e~-----------~~~hi~ga~~ip~~~~~~~~------------~~~-~~~~~~~ivl~c~~G 60 (92)
T cd01532 5 LLAREEIALIDVREEDPF-----------AQSHPLWAANLPLSRLELDA------------WVR-IPRRDTPIVVYGEGG 60 (92)
T ss_pred hhcCCCeEEEECCCHHHH-----------hhCCcccCeeCCHHHHHhhh------------Hhh-CCCCCCeEEEEeCCC
Confidence 345567899999999999 78999999999987653210 111 123588999999999
Q ss_pred hh--HHHHHHHHHHcCCCCceEecccHHHHhc
Q 017392 333 VT--ACILALGLNRLGKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 333 ~r--a~~~~~~L~~~G~~~v~~~~GG~~~W~~ 362 (372)
.+ |..+++.|+.+||++|++++||+.+|.+
T Consensus 61 ~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 61 GEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 87 5788899999999999999999999974
No 70
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.70 E-value=1.7e-17 Score=128.35 Aligned_cols=86 Identities=23% Similarity=0.484 Sum_probs=74.1
Q ss_pred HHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCC
Q 017392 252 RNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGT 331 (372)
Q Consensus 252 ~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~ 331 (372)
+.+..++..|||+|++.+| ..||||||+|+|+..+.... ...+++++++||+||..
T Consensus 4 ~~~~~~~~~iiD~R~~~~~-----------~~~~i~ga~~~~~~~~~~~~-------------~~~~~~~~~~vv~~c~~ 59 (89)
T cd00158 4 ELLDDEDAVLLDVREPEEY-----------AAGHIPGAINIPLSELEERA-------------ALLELDKDKPIVVYCRS 59 (89)
T ss_pred HHhcCCCeEEEECCCHHHH-----------hccccCCCEecchHHHhhHH-------------HhhccCCCCeEEEEeCC
Confidence 3444567999999999999 78999999999997754421 22367899999999999
Q ss_pred chhHHHHHHHHHHcCCCCceEecccHHHHh
Q 017392 332 GVTACILALGLNRLGKHDVAVYDGSWTEWG 361 (372)
Q Consensus 332 G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~ 361 (372)
|.+|..++..|+.+||.++++|+||+.+|.
T Consensus 60 ~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 60 GNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred CchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 999999999999999999999999999995
No 71
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.70 E-value=4.7e-17 Score=159.76 Aligned_cols=102 Identities=23% Similarity=0.340 Sum_probs=88.0
Q ss_pred ccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCC
Q 017392 244 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 323 (372)
Q Consensus 244 ~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~ 323 (372)
.++++++.+.+++ +.+|||+|+++|| ..||||||+|+|+..+. +.+....+++++
T Consensus 4 ~is~~el~~~l~~-~~~ivDvR~~~e~-----------~~ghIpgAi~ip~~~l~-------------~~~~~~~~~~~~ 58 (376)
T PRK08762 4 EISPAEARARAAQ-GAVLIDVREAHER-----------ASGQAEGALRIPRGFLE-------------LRIETHLPDRDR 58 (376)
T ss_pred eeCHHHHHHHHhC-CCEEEECCCHHHH-----------hCCcCCCCEECCHHHHH-------------HHHhhhcCCCCC
Confidence 3688999988865 4899999999999 78999999999986542 233333457899
Q ss_pred cEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 324 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 324 ~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
+||+||++|.+|..++..|+.+||+||++|+|||.+|... ++|+++.
T Consensus 59 ~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~-g~p~~~~ 105 (376)
T PRK08762 59 EIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDA-GLPLERP 105 (376)
T ss_pred eEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhc-CCccccc
Confidence 9999999999999999999999999999999999999998 8999865
No 72
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.70 E-value=6.8e-17 Score=137.53 Aligned_cols=96 Identities=30% Similarity=0.379 Sum_probs=78.6
Q ss_pred HHHhcCC-CCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEE
Q 017392 83 LHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLV 161 (372)
Q Consensus 83 l~~~l~~-~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~~~~vV 161 (372)
|.+++.. .+++|||+| +..+|..||||||+|+|... |.+.+..++ ++.+||
T Consensus 2 l~~~l~~~~~~~ivDvR---------~~~e~~~gHIpgAi~~~~~~-----------------l~~~l~~l~--~~~~vV 53 (145)
T cd01535 2 LAAWLGEGGQTAVVDVT---------ASANYVKRHIPGAWWVLRAQ-----------------LAQALEKLP--AAERYV 53 (145)
T ss_pred hHHHHhCCCCeEEEECC---------CHHHHHcCCCCCceeCCHHH-----------------HHHHHHhcC--CCCCEE
Confidence 3445543 358999996 45889999999999997644 455666664 568999
Q ss_pred EEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCC
Q 017392 162 VYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 207 (372)
Q Consensus 162 vy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~ 207 (372)
+||..+ ..|..+++.|+..|+++|++|+||+.+|+.+|+|+++..
T Consensus 54 v~c~~g-~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~ 98 (145)
T cd01535 54 LTCGSS-LLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGE 98 (145)
T ss_pred EEeCCC-hHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCC
Confidence 999975 458899999999999999999999999999999998764
No 73
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.69 E-value=5.4e-17 Score=129.44 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=69.3
Q ss_pred CCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchhHH
Q 017392 257 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTAC 336 (372)
Q Consensus 257 ~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~G~ra~ 336 (372)
....+||+|+++|| ..||||||+|+|+.++ ...+.....+++++||+||++|.+|.
T Consensus 17 ~~~~lIDvR~~~ef-----------~~ghIpgAinip~~~l-------------~~~l~~~~~~~~~~vvlyC~~G~rS~ 72 (101)
T TIGR02981 17 AAEHWIDVRIPEQY-----------QQEHIQGAINIPLKEI-------------KEHIATAVPDKNDTVKLYCNAGRQSG 72 (101)
T ss_pred cCCEEEECCCHHHH-----------hcCCCCCCEECCHHHH-------------HHHHHHhCCCCCCeEEEEeCCCHHHH
Confidence 35679999999999 7899999999998654 33444445567889999999999999
Q ss_pred HHHHHHHHcCCCCceEecccHHHHhc
Q 017392 337 ILALGLNRLGKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 337 ~~~~~L~~~G~~~v~~~~GG~~~W~~ 362 (372)
.++..|+.+||++|.++ ||+.+|..
T Consensus 73 ~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 73 MAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 99999999999999985 99999975
No 74
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.68 E-value=1e-16 Score=125.88 Aligned_cols=87 Identities=23% Similarity=0.290 Sum_probs=68.4
Q ss_pred hcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEcC
Q 017392 86 NLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG 165 (372)
Q Consensus 86 ~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~~~~vVvy~~ 165 (372)
++.+++++|||+| +.++|..||||||+|+|+..+... ....+ .+++++||+||.
T Consensus 5 ~~~~~~~~liDvR---------~~~e~~~~hi~ga~~ip~~~~~~~----------------~~~~~-~~~~~~ivl~c~ 58 (92)
T cd01532 5 LLAREEIALIDVR---------EEDPFAQSHPLWAANLPLSRLELD----------------AWVRI-PRRDTPIVVYGE 58 (92)
T ss_pred hhcCCCeEEEECC---------CHHHHhhCCcccCeeCCHHHHHhh----------------hHhhC-CCCCCeEEEEeC
Confidence 4556679999996 458999999999999998764310 11111 235789999999
Q ss_pred CCCch-HHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017392 166 KGIFS-AARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 166 ~g~~~-a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
.|.+. +.++++.|+..||++|++|+||+.+|.+
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 87643 6899999999999999999999999974
No 75
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.68 E-value=9.7e-17 Score=129.56 Aligned_cols=96 Identities=25% Similarity=0.470 Sum_probs=81.8
Q ss_pred HHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCC-ccccccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEc
Q 017392 251 KRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPG-SKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTAC 329 (372)
Q Consensus 251 ~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpg-Av~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC 329 (372)
......++.+|||||++.|| ..+|||| ++|+|..++....... .++++++|||||
T Consensus 13 ~~~~~~~~~~liDvR~~~e~-----------~~~~i~~~~~~ip~~~~~~~~~~~-------------~~~~~~~ivv~C 68 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEY-----------ERGHIPGAAINIPLSELKAAENLL-------------ELPDDDPIVVYC 68 (110)
T ss_pred HHhhccCCCEEEeccChhHh-----------hhcCCCcceeeeecccchhhhccc-------------ccCCCCeEEEEe
Confidence 33334567999999999999 7999999 9999999876643211 046899999999
Q ss_pred CCchhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 330 GTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 330 ~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
.+|.||..++..|+.+||.++++++||+.+|... ++|++.+
T Consensus 69 ~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~-~~~~~~~ 109 (110)
T COG0607 69 ASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGA-GLPLVRG 109 (110)
T ss_pred CCCCChHHHHHHHHHcCCccccccCCcHHHHHhc-CCCcccC
Confidence 9999999999999999999888999999999999 8898764
No 76
>PRK01415 hypothetical protein; Validated
Probab=99.67 E-value=1.4e-16 Score=145.93 Aligned_cols=103 Identities=11% Similarity=0.100 Sum_probs=86.6
Q ss_pred CccccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCC
Q 017392 241 PHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 320 (372)
Q Consensus 241 ~~~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~ 320 (372)
....|+++++.+++++++++|||||++.|| ..||||||+|+|...+.+-. +.+.+ ...++
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~-----------~~Ghi~gAinip~~~f~e~~------~~~~~---~~~~~ 169 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEV-----------EVGTFKSAINPNTKTFKQFP------AWVQQ---NQELL 169 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHH-----------hcCCcCCCCCCChHHHhhhH------HHHhh---hhhhc
Confidence 455689999999999889999999999999 78999999999987654310 11111 12367
Q ss_pred CCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcC
Q 017392 321 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 321 ~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~ 363 (372)
++++|++||.+|.||..++..|+..||++|+.|+||+.+|...
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLED 212 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence 8999999999999999999999999999999999999999876
No 77
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.67 E-value=1.1e-16 Score=128.28 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=69.7
Q ss_pred CCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchhHH
Q 017392 257 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTAC 336 (372)
Q Consensus 257 ~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~G~ra~ 336 (372)
.+-+|||+|+++|| ..||||||+|+|+.++ .+.+...+.+++++||+||++|.+|.
T Consensus 19 ~~~~lIDvR~~~ef-----------~~ghIpGAiniP~~~l-------------~~~l~~l~~~~~~~IVlyC~~G~rS~ 74 (104)
T PRK10287 19 AAEHWIDVRVPEQY-----------QQEHVQGAINIPLKEV-------------KERIATAVPDKNDTVKLYCNAGRQSG 74 (104)
T ss_pred CCCEEEECCCHHHH-----------hcCCCCccEECCHHHH-------------HHHHHhcCCCCCCeEEEEeCCChHHH
Confidence 34579999999999 7899999999998653 34455556677889999999999999
Q ss_pred HHHHHHHHcCCCCceEecccHHHHhc
Q 017392 337 ILALGLNRLGKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 337 ~~~~~L~~~G~~~v~~~~GG~~~W~~ 362 (372)
.++..|..+||++|.+ .||+.+|..
T Consensus 75 ~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 75 QAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred HHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 9999999999999987 699999974
No 78
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.66 E-value=2.6e-16 Score=128.36 Aligned_cols=98 Identities=21% Similarity=0.353 Sum_probs=72.4
Q ss_pred cccHHHHHHhcCCC------CeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHH
Q 017392 77 VVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS 150 (372)
Q Consensus 77 ~is~~~l~~~l~~~------~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~ 150 (372)
.|++++|++++.++ +++||||| +. +|..||||||+|+|+..+.. .+.+.+.
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR---------~~-ef~~ghipgAi~ip~~~~~~-------------~~~~~~~ 59 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLR---------RD-DYEGGHIKGSINLPAQSCYQ-------------TLPQVYA 59 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECC---------ch-hcCCCcccCceecchhHHHH-------------HHHHHHH
Confidence 58999999999874 68999996 44 89999999999999887543 2333344
Q ss_pred HcCCCCCCeEEEEcCCCCchHHHHHHHHH----HcCC--CceEEecCCHHHHH
Q 017392 151 ALGLENKDGLVVYDGKGIFSAARVWWMFR----VFGH--DRVWVLDGGLPRWR 197 (372)
Q Consensus 151 ~~gi~~~~~vVvy~~~g~~~a~ra~~~L~----~~G~--~~v~~L~GG~~~W~ 197 (372)
.+...+.++||+||..++.++.+++..|. ..|+ .++++|+||+.+|.
T Consensus 60 ~~~~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 60 LFSLAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HhhhcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 33334567899999975444666553333 3465 78999999999995
No 79
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.65 E-value=2.7e-16 Score=121.63 Aligned_cols=88 Identities=31% Similarity=0.539 Sum_probs=72.8
Q ss_pred HHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEE
Q 017392 83 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVV 162 (372)
Q Consensus 83 l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~~~~vVv 162 (372)
+.+++.+++.+|||+| +..+|..||||||+|+|+..+.. .....+++++++||+
T Consensus 2 ~~~~~~~~~~~iiD~R---------~~~~~~~~~i~ga~~~~~~~~~~-----------------~~~~~~~~~~~~vv~ 55 (89)
T cd00158 2 LKELLDDEDAVLLDVR---------EPEEYAAGHIPGAINIPLSELEE-----------------RAALLELDKDKPIVV 55 (89)
T ss_pred hHHHhcCCCeEEEECC---------CHHHHhccccCCCEecchHHHhh-----------------HHHhhccCCCCeEEE
Confidence 4455656689999996 45789999999999999887532 113457789999999
Q ss_pred EcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017392 163 YDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (372)
Q Consensus 163 y~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (372)
||..+. .+.++++.|+.+|++++++|+||+.+|.
T Consensus 56 ~c~~~~-~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 56 YCRSGN-RSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EeCCCc-hHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 999764 5899999999999999999999999994
No 80
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.65 E-value=4.8e-16 Score=126.79 Aligned_cols=98 Identities=18% Similarity=0.313 Sum_probs=72.9
Q ss_pred ccCHHHHHHHhhCC------CcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHc
Q 017392 244 IWTLEQVKRNIEEG------TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE 317 (372)
Q Consensus 244 ~is~~~l~~~~~~~------~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~ 317 (372)
.++++++++++.++ +.+|||+|++ || ..||||||+|+|+..+... +.+++...
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef-----------~~ghipgAi~ip~~~~~~~---------~~~~~~~~ 61 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DY-----------EGGHIKGSINLPAQSCYQT---------LPQVYALF 61 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hc-----------CCCcccCceecchhHHHHH---------HHHHHHHh
Confidence 36889999998764 5889999999 99 6899999999999775432 22233322
Q ss_pred CCCCCCcEEEEcCC-chhHHHHHHHH----HHcCC--CCceEecccHHHHhc
Q 017392 318 GISLEKPVVTACGT-GVTACILALGL----NRLGK--HDVAVYDGSWTEWGA 362 (372)
Q Consensus 318 gi~~~~~VivyC~~-G~ra~~~~~~L----~~~G~--~~v~~~~GG~~~W~~ 362 (372)
...+.++||+||.+ |.||..++..| +..|+ .++++|+||+.+|..
T Consensus 62 ~~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~~ 113 (113)
T cd01443 62 SLAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWYH 113 (113)
T ss_pred hhcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhcC
Confidence 23456789999987 67877666443 34575 689999999999963
No 81
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.65 E-value=2.8e-16 Score=131.75 Aligned_cols=109 Identities=27% Similarity=0.381 Sum_probs=80.8
Q ss_pred cccHHHHHHhcCC--CCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCC-----CCCCCCCCHHHHHHHH
Q 017392 77 VVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT-----NLPHMLPSEEAFAAAV 149 (372)
Q Consensus 77 ~is~~~l~~~l~~--~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~-----~~~~~~p~~~~~~~~l 149 (372)
+|+++||.++++. ++++|||+| +..+|..||||||+|+|+..+..... ....++++.+.++.+
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR---------~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 70 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCR---------PFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRL- 70 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECC---------CHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHH-
Confidence 4899999999975 479999997 45789999999999999986432111 011245566555543
Q ss_pred HHcCCCCCCeEEEEcCCCC-----chHHHHHHHHHHcCC-----CceEEecCCHHHHHh
Q 017392 150 SALGLENKDGLVVYDGKGI-----FSAARVWWMFRVFGH-----DRVWVLDGGLPRWRA 198 (372)
Q Consensus 150 ~~~gi~~~~~vVvy~~~g~-----~~a~ra~~~L~~~G~-----~~v~~L~GG~~~W~~ 198 (372)
... ++++|||||..+. ..+++++|+++.+++ .+|++|+||+.+|++
T Consensus 71 ~~~---~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 71 RRG---ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred hcC---CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 332 6789999998664 346677777777776 689999999999976
No 82
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.63 E-value=1.5e-15 Score=144.97 Aligned_cols=103 Identities=21% Similarity=0.332 Sum_probs=85.4
Q ss_pred CCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHH-HH
Q 017392 73 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV-SA 151 (372)
Q Consensus 73 ~~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l-~~ 151 (372)
.....|+++++.+++.+++++||||| + ..||..||||||+|+|+..+.+ |..++ ..
T Consensus 109 ~~~~~is~~el~~~l~~~~~vlIDVR--------~-~~E~~~GhI~GAi~ip~~~~~~--------------~~~~l~~~ 165 (314)
T PRK00142 109 NVGTYLKPKEVNELLDDPDVVFIDMR--------N-DYEYEIGHFENAIEPDIETFRE--------------FPPWVEEN 165 (314)
T ss_pred cCCcccCHHHHHHHhcCCCeEEEECC--------C-HHHHhcCcCCCCEeCCHHHhhh--------------hHHHHHHh
Confidence 45678999999999998889999996 4 4899999999999999987643 21222 34
Q ss_pred cCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhC
Q 017392 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (372)
Q Consensus 152 ~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~ 199 (372)
+++.++++||+||..|.+ +..++..|+..||++|+.|+||+.+|.+.
T Consensus 166 ~~~~kdk~IvvyC~~G~R-s~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 166 LDPLKDKKVVMYCTGGIR-CEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred cCCCCcCeEEEECCCCcH-HHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 566789999999997765 67777889999999999999999999863
No 83
>PRK01415 hypothetical protein; Validated
Probab=99.62 E-value=1.3e-15 Score=139.53 Aligned_cols=104 Identities=19% Similarity=0.232 Sum_probs=85.6
Q ss_pred CCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHH-H
Q 017392 73 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS-A 151 (372)
Q Consensus 73 ~~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~-~ 151 (372)
..+..|+++++.+++++++++||||| ++ .||+.||||||+|+|+..+.+ |..++. .
T Consensus 109 ~~g~~i~p~e~~~ll~~~~~vvIDVR--------n~-~E~~~Ghi~gAinip~~~f~e--------------~~~~~~~~ 165 (247)
T PRK01415 109 FKGEYIEPKDWDEFITKQDVIVIDTR--------ND-YEVEVGTFKSAINPNTKTFKQ--------------FPAWVQQN 165 (247)
T ss_pred cCccccCHHHHHHHHhCCCcEEEECC--------CH-HHHhcCCcCCCCCCChHHHhh--------------hHHHHhhh
Confidence 35778999999999998899999995 54 899999999999999887643 222221 2
Q ss_pred cCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCC
Q 017392 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (372)
Q Consensus 152 ~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g 200 (372)
..+.++++|++||..|.+ +..++..|+..||++|+.|.||+.+|.+..
T Consensus 166 ~~~~k~k~Iv~yCtgGiR-s~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 166 QELLKGKKIAMVCTGGIR-CEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hhhcCCCeEEEECCCChH-HHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 335688999999987764 888889999999999999999999998653
No 84
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.61 E-value=1.5e-15 Score=141.01 Aligned_cols=101 Identities=16% Similarity=0.247 Sum_probs=82.7
Q ss_pred cccCHHHHHHHhhC------CCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHH
Q 017392 243 LIWTLEQVKRNIEE------GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 316 (372)
Q Consensus 243 ~~is~~~l~~~~~~------~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~ 316 (372)
..++++++.+.+++ ++.+|||||++.|| ..||||||+|+|+.++.+. ++.+++...
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~-----------~~Ghi~GAiniPl~~f~~~------~~~l~~~~~- 171 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEV-----------DVGTFDGALDYRIDKFTEF------PEALAAHRA- 171 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHH-----------ccCccCCCEeCChhHhhhh------HHHHHhhhh-
Confidence 45889999887765 24789999999999 7899999999999776431 122333322
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcC
Q 017392 317 EGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 317 ~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~ 363 (372)
.+ ++++||+||.+|.||..++..|+..||++|+.+.||+.+|...
T Consensus 172 -~~-kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 172 -DL-AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred -hc-CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 12 7899999999999999999999999999999999999999875
No 85
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.59 E-value=2.7e-15 Score=119.62 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=67.7
Q ss_pred CCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCc
Q 017392 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIF 169 (372)
Q Consensus 90 ~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~~~~vVvy~~~g~~ 169 (372)
....+||+| +.++|..||||||+|+|+.++ .+.+..+..+++++||+||..|.
T Consensus 17 ~~~~lIDvR---------~~~ef~~ghIpgAinip~~~l-----------------~~~l~~~~~~~~~~vvlyC~~G~- 69 (101)
T TIGR02981 17 AAEHWIDVR---------IPEQYQQEHIQGAINIPLKEI-----------------KEHIATAVPDKNDTVKLYCNAGR- 69 (101)
T ss_pred cCCEEEECC---------CHHHHhcCCCCCCEECCHHHH-----------------HHHHHHhCCCCCCeEEEEeCCCH-
Confidence 357899996 458999999999999998654 33566666678889999999776
Q ss_pred hHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017392 170 SAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 170 ~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
+|..++..|+.+||+++.++ ||+.+|.-
T Consensus 70 rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 70 QSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 48899999999999999986 99999963
No 86
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.59 E-value=2e-15 Score=148.86 Aligned_cols=100 Identities=23% Similarity=0.447 Sum_probs=85.8
Q ss_pred CCccccCHHHHHHHhhCC-CcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcC
Q 017392 240 QPHLIWTLEQVKRNIEEG-TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEG 318 (372)
Q Consensus 240 ~~~~~is~~~l~~~~~~~-~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~g 318 (372)
.....++++++.+.++++ +.+|||+|+++|| ..||||||+|+|+.++... +. +. .
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef-----------~~ghIpGAinip~~~l~~~-------~~----~~--~ 339 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEW-----------DIVHIPGAQLIPKSEILSG-------EA----LA--K 339 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHH-----------hcCCCCCCEEcChHHhcch-------hH----Hh--h
Confidence 344578999999988754 5789999999999 7899999999999876531 11 12 3
Q ss_pred CCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcC
Q 017392 319 ISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 319 i~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~ 363 (372)
++++++||+||++|.+|..++..|+++||++|++|+||+.+|...
T Consensus 340 l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~ 384 (392)
T PRK07878 340 LPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQ 384 (392)
T ss_pred CCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHh
Confidence 678999999999999999999999999999999999999999887
No 87
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.58 E-value=4.2e-15 Score=119.11 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=68.6
Q ss_pred CCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCc
Q 017392 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIF 169 (372)
Q Consensus 90 ~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~~~~vVvy~~~g~~ 169 (372)
.+-+|||+| +.++|+.||||||+|+|+.+ +.+.+..++.+++++||+||..|.
T Consensus 19 ~~~~lIDvR---------~~~ef~~ghIpGAiniP~~~-----------------l~~~l~~l~~~~~~~IVlyC~~G~- 71 (104)
T PRK10287 19 AAEHWIDVR---------VPEQYQQEHVQGAINIPLKE-----------------VKERIATAVPDKNDTVKLYCNAGR- 71 (104)
T ss_pred CCCEEEECC---------CHHHHhcCCCCccEECCHHH-----------------HHHHHHhcCCCCCCeEEEEeCCCh-
Confidence 456799996 45899999999999999865 444677788888899999999764
Q ss_pred hHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017392 170 SAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 170 ~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
+|..+++.|..+||++|++ .||+.+|.-
T Consensus 72 rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 72 QSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred HHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 5899999999999999987 699999963
No 88
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.57 E-value=1.1e-14 Score=135.13 Aligned_cols=101 Identities=25% Similarity=0.356 Sum_probs=80.4
Q ss_pred CCCcccHHHHHHhcCC------CCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHH
Q 017392 74 KEPVVSVDWLHANLRE------PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAA 147 (372)
Q Consensus 74 ~~~~is~~~l~~~l~~------~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~ 147 (372)
....|+++++.+++++ ++++||||| + ..||+.||||||+|+|+..+.+ |..
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR--------~-~~E~~~Ghi~GAiniPl~~f~~--------------~~~ 164 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTR--------N-AFEVDVGTFDGALDYRIDKFTE--------------FPE 164 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECC--------C-HHHHccCccCCCEeCChhHhhh--------------hHH
Confidence 4568999999998865 248999996 4 4899999999999999987643 222
Q ss_pred HHHHc-CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017392 148 AVSAL-GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 148 ~l~~~-gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
++... ...++++||+||..|.+ +..++..|+..||++|+.|.||+.+|.+
T Consensus 165 ~l~~~~~~~kdk~IvvyC~~G~R-s~~Aa~~L~~~Gf~~V~~L~GGi~~w~~ 215 (257)
T PRK05320 165 ALAAHRADLAGKTVVSFCTGGIR-CEKAAIHMQEVGIDNVYQLEGGILKYFE 215 (257)
T ss_pred HHHhhhhhcCCCeEEEECCCCHH-HHHHHHHHHHcCCcceEEeccCHHHHHH
Confidence 23221 11268899999997764 8888899999999999999999999986
No 89
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.56 E-value=6e-15 Score=123.64 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=75.9
Q ss_pred cCHHHHHHHhhC--CCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccC---C-----CCCCHHHHHHHH
Q 017392 245 WTLEQVKRNIEE--GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS---Q-----TLLPADELKKRF 314 (372)
Q Consensus 245 is~~~l~~~~~~--~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~---~-----~~~~~~~l~~~~ 314 (372)
|+++++.+.+.. ++.+|||+|+..+| ..||||||+|+|+..+.... + .+.+.++.++.+
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~-----------~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 70 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEY-----------SSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRL 70 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHH-----------hhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHH
Confidence 678999999875 46899999999999 78999999999998754211 0 012223334444
Q ss_pred HHcCCCCCCcEEEEcCCchh---------HHHHHHHHHH--cCCCCceEecccHHHHhcC
Q 017392 315 EQEGISLEKPVVTACGTGVT---------ACILALGLNR--LGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 315 ~~~gi~~~~~VivyC~~G~r---------a~~~~~~L~~--~G~~~v~~~~GG~~~W~~~ 363 (372)
.+. ++++|||||..|.+ +..++..|.. .|+.+|++++||+.+|...
T Consensus 71 ~~~---~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 71 RRG---ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred hcC---CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 432 67899999998764 4444444554 3557899999999999875
No 90
>PRK07411 hypothetical protein; Validated
Probab=99.55 E-value=7.8e-15 Score=144.38 Aligned_cols=99 Identities=18% Similarity=0.396 Sum_probs=82.2
Q ss_pred cccCHHHHHHHhhCC--CcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCC
Q 017392 243 LIWTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 320 (372)
Q Consensus 243 ~~is~~~l~~~~~~~--~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~ 320 (372)
..++++++.++++.+ +.+|||+|+++|| ..||||||+|+|+.++..... .+++ . .+.
T Consensus 282 ~~Is~~el~~~l~~~~~~~vlIDVR~~~E~-----------~~ghIpGAiniP~~~l~~~~~----~~~l----~--~l~ 340 (390)
T PRK07411 282 PEMTVTELKALLDSGADDFVLIDVRNPNEY-----------EIARIPGSVLVPLPDIENGPG----VEKV----K--ELL 340 (390)
T ss_pred CccCHHHHHHHHhCCCCCeEEEECCCHHHh-----------ccCcCCCCEEccHHHhhcccc----hHHH----h--hcC
Confidence 468999999988654 5789999999999 789999999999988754311 1222 2 255
Q ss_pred CCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcC
Q 017392 321 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 321 ~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~ 363 (372)
++++||+||.+|.||..++..|+.+||++ +.|+||+.+|.+.
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~ 382 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSRE 382 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHh
Confidence 78999999999999999999999999985 5799999999887
No 91
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.55 E-value=2.8e-14 Score=115.13 Aligned_cols=97 Identities=29% Similarity=0.504 Sum_probs=78.1
Q ss_pred HHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCC-ceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeE
Q 017392 82 WLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPG-ALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGL 160 (372)
Q Consensus 82 ~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPg-Ai~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~~~~v 160 (372)
........++.+||||| ++ .+|+.+|||| ++|+|+.++.... .....++++++
T Consensus 11 ~~~~~~~~~~~~liDvR--------~~-~e~~~~~i~~~~~~ip~~~~~~~~-----------------~~~~~~~~~~i 64 (110)
T COG0607 11 EAALLLAGEDAVLLDVR--------EP-EEYERGHIPGAAINIPLSELKAAE-----------------NLLELPDDDPI 64 (110)
T ss_pred HHHHhhccCCCEEEecc--------Ch-hHhhhcCCCcceeeeecccchhhh-----------------cccccCCCCeE
Confidence 33334445579999995 55 8999999999 9999999875421 01115688999
Q ss_pred EEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCccc
Q 017392 161 VVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVES 205 (372)
Q Consensus 161 Vvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~ 205 (372)
|+||..|.+ +..++..|+..||++++.+.||+.+|...++++..
T Consensus 65 vv~C~~G~r-S~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 65 VVYCASGVR-SAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred EEEeCCCCC-hHHHHHHHHHcCCccccccCCcHHHHHhcCCCccc
Confidence 999998775 78899999999999888999999999999998764
No 92
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.54 E-value=2.1e-14 Score=141.57 Aligned_cols=101 Identities=21% Similarity=0.346 Sum_probs=83.1
Q ss_pred CCCcccHHHHHHhcCCC-CeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 017392 74 KEPVVSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (372)
Q Consensus 74 ~~~~is~~~l~~~l~~~-~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~ 152 (372)
....|++++++++++++ +++|||+| +.++|..||||||+|+|+..+... + .+.
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR---------~~~ef~~ghIpGAinip~~~l~~~-----------~----~~~-- 338 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVR---------EPVEWDIVHIPGAQLIPKSEILSG-----------E----ALA-- 338 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECC---------CHHHHhcCCCCCCEEcChHHhcch-----------h----HHh--
Confidence 45689999999999754 58999996 458999999999999999875320 1 122
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCC
Q 017392 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGY 201 (372)
Q Consensus 153 gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~ 201 (372)
.++++++||+||..|. +|.++++.|+..||++|++|+||+.+|..+..
T Consensus 339 ~l~~d~~iVvyC~~G~-rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~ 386 (392)
T PRK07878 339 KLPQDRTIVLYCKTGV-RSAEALAALKKAGFSDAVHLQGGVVAWAKQVD 386 (392)
T ss_pred hCCCCCcEEEEcCCCh-HHHHHHHHHHHcCCCcEEEecCcHHHHHHhcC
Confidence 3468899999999766 48999999999999999999999999987654
No 93
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.52 E-value=1.6e-14 Score=140.61 Aligned_cols=95 Identities=21% Similarity=0.382 Sum_probs=80.0
Q ss_pred ccccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCC
Q 017392 242 HLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 321 (372)
Q Consensus 242 ~~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~ 321 (372)
...++.+++.+.. .+.+|||+|+++|| ..||||||+|+|+.++..... ...+++
T Consensus 260 ~~~i~~~~~~~~~--~~~~IIDVR~~~ef-----------~~ghIpgAinip~~~l~~~~~-------------~~~~~~ 313 (355)
T PRK05597 260 GEVLDVPRVSALP--DGVTLIDVREPSEF-----------AAYSIPGAHNVPLSAIREGAN-------------PPSVSA 313 (355)
T ss_pred ccccCHHHHHhcc--CCCEEEECCCHHHH-----------ccCcCCCCEEeCHHHhhhccc-------------cccCCC
Confidence 4467888888543 35789999999999 789999999999987654311 113678
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhc
Q 017392 322 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 322 ~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~ 362 (372)
+++||+||++|.+|..+++.|+.+||++|++|+||+.+|.+
T Consensus 314 ~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 314 GDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 89999999999999999999999999999999999999975
No 94
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.51 E-value=4.8e-14 Score=135.99 Aligned_cols=103 Identities=18% Similarity=0.331 Sum_probs=75.1
Q ss_pred HHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccC---------C---------CCCCHH
Q 017392 247 LEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS---------Q---------TLLPAD 308 (372)
Q Consensus 247 ~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~---------~---------~~~~~~ 308 (372)
.+++.+.+. ++.+|||||++.|| ..||||||+|+|+.+..+.. + .+.+ .
T Consensus 5 ~~~~~~~~~-~~~~lIDVRsp~Ef-----------~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~-~ 71 (345)
T PRK11784 5 AQDFRALFL-NDTPLIDVRSPIEF-----------AEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVA-G 71 (345)
T ss_pred HHHHHHHHh-CCCEEEECCCHHHH-----------hcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcc-h
Confidence 455555543 46899999999999 78999999999996533210 1 1111 2
Q ss_pred HHHHHHHHc--CC-CCCCcEEEEc-CCchhHHHHHHHHHHcCCCCceEecccHHHHhcC
Q 017392 309 ELKKRFEQE--GI-SLEKPVVTAC-GTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 309 ~l~~~~~~~--gi-~~~~~VivyC-~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~ 363 (372)
++.+.+.+. .+ .++++||+|| ++|.||..+++.|+.+|| +|++++||+.+|...
T Consensus 72 ~l~~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~ 129 (345)
T PRK11784 72 NIAAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRF 129 (345)
T ss_pred hHHHHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHh
Confidence 233332221 12 3788999999 578999999999999999 699999999999876
No 95
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.47 E-value=5.8e-14 Score=133.56 Aligned_cols=98 Identities=23% Similarity=0.285 Sum_probs=70.6
Q ss_pred CcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccC--CC-CC--------------CHHHHHHHHHHc--C
Q 017392 258 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS--QT-LL--------------PADELKKRFEQE--G 318 (372)
Q Consensus 258 ~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~--~~-~~--------------~~~~l~~~~~~~--g 318 (372)
...|||||++.|| ..||||||+|+|+.+..+.. ++ ++ -...+...+.+. -
T Consensus 2 ~~~liDVRsp~Ef-----------~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~ 70 (311)
T TIGR03167 2 FDPLIDVRSPAEF-----------AEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAF 70 (311)
T ss_pred CCEEEECCCHHHH-----------hcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhh
Confidence 4579999999999 78999999999995432211 11 11 011233333321 2
Q ss_pred CCCCCcEEEEc-CCchhHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCC
Q 017392 319 ISLEKPVVTAC-GTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 368 (372)
Q Consensus 319 i~~~~~VivyC-~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv 368 (372)
.++++.||+|| ++|.||..+++.|+.+|| +|++++||+.+|... +.+.
T Consensus 71 ~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~-~~~~ 119 (311)
T TIGR03167 71 ADGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRF-VIDQ 119 (311)
T ss_pred cCCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHh-hhhh
Confidence 34455699999 479999999999999999 699999999999887 4443
No 96
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.46 E-value=1.3e-13 Score=134.16 Aligned_cols=95 Identities=22% Similarity=0.361 Sum_probs=76.8
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 017392 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (372)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi 154 (372)
...++++++.+... +.+|||+| + .++|..||||||+|+|+..+... +....+
T Consensus 260 ~~~i~~~~~~~~~~--~~~IIDVR--------~-~~ef~~ghIpgAinip~~~l~~~-----------------~~~~~~ 311 (355)
T PRK05597 260 GEVLDVPRVSALPD--GVTLIDVR--------E-PSEFAAYSIPGAHNVPLSAIREG-----------------ANPPSV 311 (355)
T ss_pred ccccCHHHHHhccC--CCEEEECC--------C-HHHHccCcCCCCEEeCHHHhhhc-----------------cccccC
Confidence 34788999885543 57999996 4 48999999999999999875431 111235
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017392 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 155 ~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
+++++||+||..|. ++.++++.|+.+||++|++|+||+.+|.+
T Consensus 312 ~~~~~IvvyC~~G~-rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 312 SAGDEVVVYCAAGV-RSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred CCCCeEEEEcCCCH-HHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 67889999999765 58999999999999999999999999975
No 97
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.43 E-value=1.9e-13 Score=133.50 Aligned_cols=94 Identities=17% Similarity=0.258 Sum_probs=76.7
Q ss_pred ccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCC---CccccccccccccCCCCCCHHHHHHHHHHcCCC
Q 017392 244 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVP---GSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 320 (372)
Q Consensus 244 ~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIp---gAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~ 320 (372)
.++++++.+.+.+++.+|||||+++|| ..|||| ||+|||+.++.+.. +..+.+. .++
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~-----------~~ghI~~~~gAinIPl~~l~~~~-------~~~~~l~--~~~ 331 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEV-----------LLKDLPEGGASLKLPLSAITDDA-------DILHALS--PID 331 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHh-----------hhccCCCCCccEeCcHHHhhcch-------hhhhhcc--ccC
Confidence 689999999988777899999999999 789998 59999998875421 0111111 244
Q ss_pred CCCcEEEEcCCchhHHHHHHHHHHcCCCC-ceEecccHH
Q 017392 321 LEKPVVTACGTGVTACILALGLNRLGKHD-VAVYDGSWT 358 (372)
Q Consensus 321 ~~~~VivyC~~G~ra~~~~~~L~~~G~~~-v~~~~GG~~ 358 (372)
++ +|||||++|.||..++..|+.+||++ |++|.||+.
T Consensus 332 ~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 332 GD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 44 99999999999999999999999986 999999985
No 98
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.42 E-value=8.2e-13 Score=120.92 Aligned_cols=126 Identities=19% Similarity=0.257 Sum_probs=102.2
Q ss_pred cccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccC----CCCCCHHHHHHHHHHcC
Q 017392 243 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS----QTLLPADELKKRFEQEG 318 (372)
Q Consensus 243 ~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~----~~~~~~~~l~~~~~~~g 318 (372)
.+++.+++.+++.+...+|||+---- .........++..-|||||.++.++...+.. +++..++.+++..+.+|
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~--~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYF--PPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeec--CchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 46889999999988889999986210 0000112223367799999999998876543 46778899999999999
Q ss_pred CCCCCcEEEEcC--Cch-hHHHHHHHHHHcCCCCceEecccHHHHhcCCCCCCccC
Q 017392 319 ISLEKPVVTACG--TGV-TACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 371 (372)
Q Consensus 319 i~~~~~VivyC~--~G~-ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~g~pv~~~ 371 (372)
+++++.+|||.+ .|+ .|++++|+++.+|+.+|.+|+||+..|.+. ++|+.++
T Consensus 83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~-g~~~~s~ 137 (286)
T KOG1529|consen 83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAA-GGPVDSS 137 (286)
T ss_pred CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHc-CCccccc
Confidence 999999999998 775 577999999999999999999999999999 8999865
No 99
>PRK07411 hypothetical protein; Validated
Probab=99.42 E-value=4.4e-13 Score=132.00 Aligned_cols=104 Identities=22% Similarity=0.340 Sum_probs=81.0
Q ss_pred CCCcccHHHHHHhcCCC--CeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHH
Q 017392 74 KEPVVSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (372)
Q Consensus 74 ~~~~is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~ 151 (372)
....|+++++.++++++ +.+|||+| +.++|+.||||||+|+|+.++.... ..+++. .
T Consensus 280 ~~~~Is~~el~~~l~~~~~~~vlIDVR---------~~~E~~~ghIpGAiniP~~~l~~~~--------~~~~l~----~ 338 (390)
T PRK07411 280 EIPEMTVTELKALLDSGADDFVLIDVR---------NPNEYEIARIPGSVLVPLPDIENGP--------GVEKVK----E 338 (390)
T ss_pred ccCccCHHHHHHHHhCCCCCeEEEECC---------CHHHhccCcCCCCEEccHHHhhccc--------chHHHh----h
Confidence 34579999999998754 58999996 4589999999999999998764310 112222 2
Q ss_pred cCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCC
Q 017392 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202 (372)
Q Consensus 152 ~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~p 202 (372)
+.++++||+||..|. +|.++++.|+.+||++ +.|+||+.+|.++..|
T Consensus 339 --l~~d~~IVvyC~~G~-RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p 385 (390)
T PRK07411 339 --LLNGHRLIAHCKMGG-RSAKALGILKEAGIEG-TNVKGGITAWSREVDP 385 (390)
T ss_pred --cCCCCeEEEECCCCH-HHHHHHHHHHHcCCCe-EEecchHHHHHHhcCC
Confidence 346889999999765 5899999999999975 5799999999876543
No 100
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.27 E-value=8.5e-12 Score=121.91 Aligned_cols=94 Identities=23% Similarity=0.355 Sum_probs=73.4
Q ss_pred cccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCC---CceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017392 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIP---GALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (372)
Q Consensus 77 ~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIP---gAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~g 153 (372)
.++++++.+++.+++.+||||| ++ +||+.|||| ||+|+|+..+.+.. . .+..+.
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR--------~~-~E~~~ghI~~~~gAinIPl~~l~~~~-----------~---~~~~l~ 328 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVR--------EP-HEVLLKDLPEGGASLKLPLSAITDDA-----------D---ILHALS 328 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECC--------CH-HHhhhccCCCCCccEeCcHHHhhcch-----------h---hhhhcc
Confidence 5899999999987778999996 44 899999998 69999998875310 0 112222
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCCc-eEEecCCHH
Q 017392 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDR-VWVLDGGLP 194 (372)
Q Consensus 154 i~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~-v~~L~GG~~ 194 (372)
..++++||+||..|.+ |..++..|+..||++ |+.|.||+.
T Consensus 329 ~~~~~~Ivv~C~sG~R-S~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 329 PIDGDNVVVYCASGIR-SADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ccCCCcEEEECCCChh-HHHHHHHHHHcCCCCceEEeccccC
Confidence 2233489999998865 888999999999986 999999975
No 101
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.17 E-value=5.3e-11 Score=109.61 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=88.2
Q ss_pred CccccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCC
Q 017392 241 PHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 320 (372)
Q Consensus 241 ~~~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~ 320 (372)
....++++++.+++.+++.++||+|...|| ..||..||++.+...+.+- ++.+++... .-
T Consensus 111 vG~yl~p~~wn~~l~D~~~vviDtRN~YE~-----------~iG~F~gAv~p~~~tFref------P~~v~~~~~---~~ 170 (308)
T COG1054 111 VGTYLSPKDWNELLSDPDVVVIDTRNDYEV-----------AIGHFEGAVEPDIETFREF------PAWVEENLD---LL 170 (308)
T ss_pred ccCccCHHHHHHHhcCCCeEEEEcCcceeE-----------eeeeecCccCCChhhhhhh------HHHHHHHHH---hc
Confidence 355789999999999999999999999999 7999999999998776542 233444443 34
Q ss_pred CCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHHhcCC
Q 017392 321 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQP 364 (372)
Q Consensus 321 ~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W~~~~ 364 (372)
++++|+.||.+|.|.-.+...|+..||++|+.|+||+-.|..+.
T Consensus 171 ~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~ 214 (308)
T COG1054 171 KDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDV 214 (308)
T ss_pred cCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhhc
Confidence 57799999999999999999999999999999999999998773
No 102
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.12 E-value=1.1e-10 Score=107.58 Aligned_cols=117 Identities=20% Similarity=0.298 Sum_probs=87.5
Q ss_pred ccccccccccCCCCCCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCC
Q 017392 59 AAGRRADYSTLSVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHM 138 (372)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~ 138 (372)
.+........+.....+..|+|++..+++.++++++||+| |. -||+.||..||++.+...+++.
T Consensus 96 IV~lg~~ddv~p~~~vG~yl~p~~wn~~l~D~~~vviDtR--------N~-YE~~iG~F~gAv~p~~~tFref------- 159 (308)
T COG1054 96 IVALGVEDDVDPLENVGTYLSPKDWNELLSDPDVVVIDTR--------ND-YEVAIGHFEGAVEPDIETFREF------- 159 (308)
T ss_pred heecCCCCCcCccccccCccCHHHHHHHhcCCCeEEEEcC--------cc-eeEeeeeecCccCCChhhhhhh-------
Confidence 3444444434444455889999999999999999999995 54 6899999999999998887651
Q ss_pred CCCHHHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017392 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 139 ~p~~~~~~~~l~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (372)
++.+++.+. .-++++|+.||..|.+.....+| |...||++|+.|+||+-.+-+
T Consensus 160 ---P~~v~~~~~---~~~~KkVvmyCTGGIRCEKas~~-m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 160 ---PAWVEENLD---LLKDKKVVMYCTGGIRCEKASAW-MKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred ---HHHHHHHHH---hccCCcEEEEcCCceeehhhHHH-HHHhcchhhhcccchHHHHhh
Confidence 122222222 23677999999988876555555 666699999999999988754
No 103
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.11 E-value=4.7e-11 Score=120.89 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=63.4
Q ss_pred CCcEEEeccCCcccCCCCCCCCCCCCCccCCC----ccccccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCc
Q 017392 257 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPG----SKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTG 332 (372)
Q Consensus 257 ~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpg----Av~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~G 332 (372)
++.++||+|+++|| ..||||| |+|+|+.++.. .+. .++++++||+||++|
T Consensus 406 ~~~~lIDVR~~~E~-----------~~~hI~g~~~~a~niP~~~l~~-------------~~~--~l~~~~~iivyC~~G 459 (482)
T PRK01269 406 PDDVIIDIRSPDEQ-----------EDKPLKLEGVEVKSLPFYKLST-------------QFG--DLDQSKTYLLYCDRG 459 (482)
T ss_pred CCCEEEECCCHHHH-----------hcCCCCCCCceEEECCHHHHHH-------------HHh--hcCCCCeEEEECCCC
Confidence 46889999999999 7899999 99999977643 222 367889999999999
Q ss_pred hhHHHHHHHHHHcCCCCceEecc
Q 017392 333 VTACILALGLNRLGKHDVAVYDG 355 (372)
Q Consensus 333 ~ra~~~~~~L~~~G~~~v~~~~G 355 (372)
.||..++..|+.+||+||++|.+
T Consensus 460 ~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 460 VMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred HHHHHHHHHHHHcCCccEEecCC
Confidence 99999999999999999999853
No 104
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.93 E-value=1.3e-09 Score=101.92 Aligned_cols=105 Identities=17% Similarity=0.255 Sum_probs=84.2
Q ss_pred CCccccCHHHHHHHhhC-CCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcC
Q 017392 240 QPHLIWTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEG 318 (372)
Q Consensus 240 ~~~~~is~~~l~~~~~~-~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~g 318 (372)
.++..|+..+.++.+++ ...++||+|++.|| +.-|+|+|+|||+.++....+ +. +...-
T Consensus 314 ~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~-----------eI~~lP~avNIPL~~l~~~~~-----~~----~~~~~ 373 (427)
T KOG2017|consen 314 EPDERVSVTDYKRILDSGAKHLLLDVRPSHEY-----------EICRLPEAVNIPLKELRSRSG-----KK----LQGDL 373 (427)
T ss_pred ChhhcccHHHHHHHHhcCCCeEEEeccCcceE-----------EEEecccccccchhhhhhhhh-----hh----hcccc
Confidence 45677999999998876 56899999999999 799999999999999876543 11 11111
Q ss_pred CCCCCcEEEEcCCchhHHHHHHHHHHc-CCCCceEecccHHHHhcCC
Q 017392 319 ISLEKPVVTACGTGVTACILALGLNRL-GKHDVAVYDGSWTEWGAQP 364 (372)
Q Consensus 319 i~~~~~VivyC~~G~ra~~~~~~L~~~-G~~~v~~~~GG~~~W~~~~ 364 (372)
-+..++|+|.|+.|+.|..+.+.|++. +..+|+.+-||+.+|....
T Consensus 374 ~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~v 420 (427)
T KOG2017|consen 374 NTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAAKV 420 (427)
T ss_pred cccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHHhc
Confidence 234578999999999999999999974 4457888899999999874
No 105
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=3.2e-09 Score=99.45 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=72.8
Q ss_pred CCCcccHHHHHHhcCCC------CeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHH
Q 017392 74 KEPVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAA 147 (372)
Q Consensus 74 ~~~~is~~~l~~~l~~~------~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~ 147 (372)
.-..||++.|+.++++. ..+||||| -| -||..|||+||+|+...+... .
T Consensus 154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR--------~p-yEY~GGHIkgavnl~~~~~~~----------------~ 208 (325)
T KOG3772|consen 154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCR--------YP-YEYEGGHIKGAVNLYSKELLQ----------------D 208 (325)
T ss_pred cccccCHHHHHHHHHhccccceeeEEEEEeC--------Cc-ccccCcccccceecccHhhhh----------------h
Confidence 34689999999999752 36799997 35 589999999999998765322 1
Q ss_pred HHHHc-CC---CCCCeEEEEcCCCCchHHHHHHHHHH------------cCCCceEEecCCHHHHHhC
Q 017392 148 AVSAL-GL---ENKDGLVVYDGKGIFSAARVWWMFRV------------FGHDRVWVLDGGLPRWRAS 199 (372)
Q Consensus 148 ~l~~~-gi---~~~~~vVvy~~~g~~~a~ra~~~L~~------------~G~~~v~~L~GG~~~W~~~ 199 (372)
.+... +. .+...+|+||.....+..+++..|+. +-|..+++|+||+.+|-..
T Consensus 209 ~f~~~~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 209 FFLLKDGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred hhccccccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 11111 11 13457889998766667888888883 4456899999999999754
No 106
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=3.1e-09 Score=99.61 Aligned_cols=99 Identities=16% Similarity=0.291 Sum_probs=71.9
Q ss_pred cccCHHHHHHHhhC------CCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHH
Q 017392 243 LIWTLEQVKRNIEE------GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 316 (372)
Q Consensus 243 ~~is~~~l~~~~~~------~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~ 316 (372)
..||++.++.++.+ ..++|||+|-+.|| ..|||+||+||+..+....... .+
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY-----------~GGHIkgavnl~~~~~~~~~f~-----------~~ 213 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEY-----------EGGHIKGAVNLYSKELLQDFFL-----------LK 213 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeCCcccc-----------cCcccccceecccHhhhhhhhc-----------cc
Confidence 46899999988864 23779999999999 7899999999998765432110 00
Q ss_pred cCCC---CCCcEEEEcC-CchhHHHHHHHHHH------------cCCCCceEecccHHHHhcC
Q 017392 317 EGIS---LEKPVVTACG-TGVTACILALGLNR------------LGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 317 ~gi~---~~~~VivyC~-~G~ra~~~~~~L~~------------~G~~~v~~~~GG~~~W~~~ 363 (372)
.+.. ....+||||. +-.|...+|..|+. +-|..+++|+||+.+|-..
T Consensus 214 ~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 214 DGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred cccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 0111 2346899994 55677777777762 4667899999999998765
No 107
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.76 E-value=1.4e-08 Score=102.87 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=59.0
Q ss_pred CCeEEEEeecCCCCCCCCchhhhhhCCCCC----ceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEcC
Q 017392 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPG----ALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG 165 (372)
Q Consensus 90 ~~~~iiDvR~~~~~~~r~~~~~y~~gHIPg----Ai~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~gi~~~~~vVvy~~ 165 (372)
++.+|||+| + .++|+.||||| |+|+|+..+.. .+.. +++++++|+||.
T Consensus 406 ~~~~lIDVR--------~-~~E~~~~hI~g~~~~a~niP~~~l~~-----------------~~~~--l~~~~~iivyC~ 457 (482)
T PRK01269 406 PDDVIIDIR--------S-PDEQEDKPLKLEGVEVKSLPFYKLST-----------------QFGD--LDQSKTYLLYCD 457 (482)
T ss_pred CCCEEEECC--------C-HHHHhcCCCCCCCceEEECCHHHHHH-----------------HHhh--cCCCCeEEEECC
Confidence 368999996 4 58999999999 99999887532 2333 367789999999
Q ss_pred CCCchHHHHHHHHHHcCCCceEEec
Q 017392 166 KGIFSAARVWWMFRVFGHDRVWVLD 190 (372)
Q Consensus 166 ~g~~~a~ra~~~L~~~G~~~v~~L~ 190 (372)
.|.+ |..++..|+.+||++|+++.
T Consensus 458 ~G~r-S~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 458 RGVM-SRLQALYLREQGFSNVKVYR 481 (482)
T ss_pred CCHH-HHHHHHHHHHcCCccEEecC
Confidence 8764 88999999999999999775
No 108
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.49 E-value=1.3e-07 Score=88.83 Aligned_cols=102 Identities=23% Similarity=0.272 Sum_probs=77.4
Q ss_pred CCcccHHHHHHhcCC-CCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017392 75 EPVVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (372)
Q Consensus 75 ~~~is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~g 153 (372)
.--||+.++++.+++ ...++|||| |..+|+..|+|+|+|||+.++..... + .+...-
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvR---------p~~~~eI~~lP~avNIPL~~l~~~~~------------~-~~~~~~ 373 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVR---------PSHEYEICRLPEAVNIPLKELRSRSG------------K-KLQGDL 373 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEecc---------CcceEEEEecccccccchhhhhhhhh------------h-hhcccc
Confidence 456999999999987 578999997 55899999999999999999865321 1 111111
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCC-ceEEecCCHHHHHhC
Q 017392 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHD-RVWVLDGGLPRWRAS 199 (372)
Q Consensus 154 i~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~-~v~~L~GG~~~W~~~ 199 (372)
-....+|+|.|..|+. +.++.|+|+...++ +|.-+-||+.+|...
T Consensus 374 ~~~~~~I~ViCrrGNd-SQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 374 NTESKDIFVICRRGND-SQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred cccCCCEEEEeCCCCc-hHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 2344668899998875 89999999976654 566677999999864
No 109
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.07 E-value=8.7e-06 Score=75.70 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=74.9
Q ss_pred CCcccHHHHHHhcCCC------CeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHH
Q 017392 75 EPVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAA 148 (372)
Q Consensus 75 ~~~is~~~l~~~l~~~------~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~ 148 (372)
-+-|+++.|++.++.. +.+|||||. + -||..|||-.||||.-.. ++.-.
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRF--------e-YEY~GGHIinaVNi~s~~----------------~l~~~ 295 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRF--------E-YEYRGGHIINAVNISSTK----------------KLGLL 295 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeecc--------e-eeecCceeeeeeecchHH----------------HHHHH
Confidence 3579999999998742 477999972 3 489999999999997543 33334
Q ss_pred HHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHc------------CCCceEEecCCHHHHHh
Q 017392 149 VSALGLENKDGLVVYDGKGIFSAARVWWMFRVF------------GHDRVWVLDGGLPRWRA 198 (372)
Q Consensus 149 l~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~------------G~~~v~~L~GG~~~W~~ 198 (372)
+.....+....+|+.|.....++.+++..|+.. =|..|++|+||+.+.-.
T Consensus 296 F~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 296 FRHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred HHhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 444455566788899998777899999888753 24579999999988653
No 110
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.86 E-value=3.8e-05 Score=71.49 Aligned_cols=97 Identities=19% Similarity=0.323 Sum_probs=72.5
Q ss_pred cccCHHHHHHHhhCC------CcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHH
Q 017392 243 LIWTLEQVKRNIEEG------TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 316 (372)
Q Consensus 243 ~~is~~~l~~~~~~~------~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~ 316 (372)
..|+.+.++..++.. +.+|||+|-+.|| ..|||-.||||.-.+ +|.-.|..
T Consensus 242 ~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY-----------~GGHIinaVNi~s~~------------~l~~~F~h 298 (427)
T COG5105 242 QRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEY-----------RGGHIINAVNISSTK------------KLGLLFRH 298 (427)
T ss_pred hhcCHHHHHHHHhchhhhhhhceeEEeecceeee-----------cCceeeeeeecchHH------------HHHHHHHh
Confidence 368999998887642 3569999999999 789999999997643 33334443
Q ss_pred cCCCCCCcEEEEcC-CchhHHHHHHHHHHc------------CCCCceEecccHHHHhc
Q 017392 317 EGISLEKPVVTACG-TGVTACILALGLNRL------------GKHDVAVYDGSWTEWGA 362 (372)
Q Consensus 317 ~gi~~~~~VivyC~-~G~ra~~~~~~L~~~------------G~~~v~~~~GG~~~W~~ 362 (372)
.-+..-.-+|++|. +.+|+..+|..|+.+ -|..|++++||+...-.
T Consensus 299 kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 299 KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 33444567899995 678999999888643 45689999999976543
No 111
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.54 E-value=0.0019 Score=59.08 Aligned_cols=106 Identities=20% Similarity=0.285 Sum_probs=68.3
Q ss_pred cccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCccccccc-----CCCCCCCCCCHHHHHHHHHH
Q 017392 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADR-----TTNLPHMLPSEEAFAAAVSA 151 (372)
Q Consensus 77 ~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~-----~~~~~~~~p~~~~~~~~l~~ 151 (372)
-+|++||...+..++++++|+| + +..||.+|+++-+..+..+ .-++...+|........-.+
T Consensus 5 ~~s~~wlnr~l~~~nllllDCR---------s----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~ 71 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCR---------S----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPAR 71 (343)
T ss_pred HHHHHHHHhhcccCceEEEecC---------C----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCcccccccccc
Confidence 4789999999998899999997 3 4689999999987765332 22344445543322211111
Q ss_pred cCCCCCCeEEEEcCCC-----CchHHH----HHHHHHHcCCCceEEecCCHHHHHhC
Q 017392 152 LGLENKDGLVVYDGKG-----IFSAAR----VWWMFRVFGHDRVWVLDGGLPRWRAS 199 (372)
Q Consensus 152 ~gi~~~~~vVvy~~~g-----~~~a~r----a~~~L~~~G~~~v~~L~GG~~~W~~~ 199 (372)
-+..+||.||... ...+++ ....++..|+ .++.|.||+...+++
T Consensus 72 ---c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 72 ---CGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAE 124 (343)
T ss_pred ---CCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhh
Confidence 1346889998741 111222 2234566787 699999999998764
No 112
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.39 E-value=0.021 Score=46.07 Aligned_cols=86 Identities=20% Similarity=0.318 Sum_probs=40.4
Q ss_pred cCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCC---CC-CCccCCCccccccccccccCCCCCCH---HHHHHHHHHc
Q 017392 245 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRK---GI-RSGHVPGSKCIPFPQMLDASQTLLPA---DELKKRFEQE 317 (372)
Q Consensus 245 is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~---~~-~~GhIpgAv~ip~~~l~~~~~~~~~~---~~l~~~~~~~ 317 (372)
++++++.+..+.+=-.||+.|+..|=.+. +.... .. ..| + .-+|+|+.. +. .+. +.+.+.+.+
T Consensus 15 ~~~~d~~~la~~GfktVInlRpd~E~~~q-p~~~~~~~~a~~~G-l-~y~~iPv~~-----~~-~~~~~v~~f~~~l~~- 84 (110)
T PF04273_consen 15 PSPEDLAQLAAQGFKTVINLRPDGEEPGQ-PSSAEEAAAAEALG-L-QYVHIPVDG-----GA-ITEEDVEAFADALES- 84 (110)
T ss_dssp --HHHHHHHHHCT--EEEE-S-TTSTTT--T-HHCHHHHHHHCT---EEEE----T-----TT---HHHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHCCCcEEEECCCCCCCCCC-CCHHHHHHHHHHcC-C-eEEEeecCC-----CC-CCHHHHHHHHHHHHh-
Confidence 57888887776655679999988663211 00000 00 000 0 124555432 11 222 445555553
Q ss_pred CCCCCCcEEEEcCCchhHHHHHHHHH
Q 017392 318 GISLEKPVVTACGTGVTACILALGLN 343 (372)
Q Consensus 318 gi~~~~~VivyC~~G~ra~~~~~~L~ 343 (372)
.++||.+||++|.||..+|.+-+
T Consensus 85 ---~~~Pvl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 85 ---LPKPVLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp ---TTTSEEEE-SCSHHHHHHHHHHH
T ss_pred ---CCCCEEEECCCChhHHHHHHHHh
Confidence 24799999999999987765443
No 113
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.23 E-value=0.011 Score=55.00 Aligned_cols=134 Identities=14% Similarity=0.168 Sum_probs=77.4
Q ss_pred CeEEEEeecCCCCCCCCchhhhhhCCCCCceecCccccccc----CCCCCCCCCCH--------------HHHHHHHHHc
Q 017392 91 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADR----TTNLPHMLPSE--------------EAFAAAVSAL 152 (372)
Q Consensus 91 ~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~----~~~~~~~~p~~--------------~~~~~~l~~~ 152 (372)
+.-+|||| .| -+|..||.|+++|+|.-.=... +.....+.+.. +.++.+...
T Consensus 15 ~~~lid~r--------ap-~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f- 84 (334)
T COG2603 15 DTPLIDVR--------AP-IEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF- 84 (334)
T ss_pred CCceeecc--------ch-HHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH-
Confidence 67899996 45 7999999999999996431110 00001111111 111111111
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHHH-HHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCCCC
Q 017392 153 GLENKDGLVVYDGKGIFSAARVWWMF-RVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVG 231 (372)
Q Consensus 153 gi~~~~~vVvy~~~g~~~a~ra~~~L-~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (372)
..+.++-++|..|+.++-..+..| +..|++ .--+-||..+.+.
T Consensus 85 --~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalrt--------------------------------- 128 (334)
T COG2603 85 --QEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALRT--------------------------------- 128 (334)
T ss_pred --HHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHHH---------------------------------
Confidence 123455566777766666655556 666763 4445577666431
Q ss_pred CcceeeccCCccccCHHHHHHHhhCCCcEEEe-ccCCcccCCCCCCCCCCCCCccCCCcccccc
Q 017392 232 PTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVD-ARSKARFDGDAPEPRKGIRSGHVPGSKCIPF 294 (372)
Q Consensus 232 ~~~~~~~~~~~~~is~~~l~~~~~~~~~~iID-vR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~ 294 (372)
...+...+.+..+.+++++ ++....+ .....|+|+|++-
T Consensus 129 -------------~~~~a~~~~i~~k~~il~g~Tgcgkt~-----------lve~lp~aidlE~ 168 (334)
T COG2603 129 -------------FAIQATIKEIAQKDFILCGCTGCGKTE-----------LVEQLPNAIDLEG 168 (334)
T ss_pred -------------HHHHHHHHHhccCCEEEeCCCCCcHHH-----------HHHhCCCccCcHh
Confidence 1123344455667788899 7777666 5677899998874
No 114
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.15 E-value=0.054 Score=45.33 Aligned_cols=94 Identities=13% Similarity=0.162 Sum_probs=49.8
Q ss_pred cCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCc--cccccccccccCCCC--CCHHHHHHHHHHcCCC
Q 017392 245 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGS--KCIPFPQMLDASQTL--LPADELKKRFEQEGIS 320 (372)
Q Consensus 245 is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgA--v~ip~~~l~~~~~~~--~~~~~l~~~~~~~gi~ 320 (372)
++.+++....+.+=-.|||-|+..|-.+... .........-+|. +++|+.. +.+ ...+.+.+.+. .
T Consensus 15 lt~~d~~~L~~~GiktVIdlR~~~E~~~~p~-~~~~~~~a~~~gl~y~~iPv~~-----~~~~~~~v~~f~~~~~----~ 84 (135)
T TIGR01244 15 LTKADAAQAAQLGFKTVINNRPDREEESQPD-FAQIKAAAEAAGVTYHHQPVTA-----GDITPDDVETFRAAIG----A 84 (135)
T ss_pred CCHHHHHHHHHCCCcEEEECCCCCCCCCCCC-HHHHHHHHHHCCCeEEEeecCC-----CCCCHHHHHHHHHHHH----h
Confidence 4567776654444457999999887533210 0000000001122 3455432 111 12344555555 2
Q ss_pred CCCcEEEEcCCchhHHHHHHHH-HHcCCC
Q 017392 321 LEKPVVTACGTGVTACILALGL-NRLGKH 348 (372)
Q Consensus 321 ~~~~VivyC~~G~ra~~~~~~L-~~~G~~ 348 (372)
.++||++||.+|.|+..+|.++ ...|..
T Consensus 85 ~~~pvL~HC~sG~Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 85 AEGPVLAYCRSGTRSSLLWGFRQAAEGVP 113 (135)
T ss_pred CCCCEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 3589999999999998776543 335653
No 115
>COG2603 Predicted ATPase [General function prediction only]
Probab=94.06 E-value=0.067 Score=49.90 Aligned_cols=92 Identities=22% Similarity=0.293 Sum_probs=55.9
Q ss_pred CCcEEEeccCCcccCCCCCCCCCCCCCccCCCcccccccccccc------CCC-CCCH----------HHHH-HHHHH-c
Q 017392 257 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA------SQT-LLPA----------DELK-KRFEQ-E 317 (372)
Q Consensus 257 ~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~------~~~-~~~~----------~~l~-~~~~~-~ 317 (372)
.+..+||||.+.|| ..||.|+++|+|...-... .++ ..+. .++. .++.. .
T Consensus 14 ~~~~lid~rap~ef-----------~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask 82 (334)
T COG2603 14 ADTPLIDVRAPIEF-----------ENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASK 82 (334)
T ss_pred cCCceeeccchHHH-----------hcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35789999999999 7999999999997432110 000 0000 1111 11110 0
Q ss_pred CCCCCCcEEEEcC-CchhHHHHHHHH-HHcCCCCceEecccHHHH
Q 017392 318 GISLEKPVVTACG-TGVTACILALGL-NRLGKHDVAVYDGSWTEW 360 (372)
Q Consensus 318 gi~~~~~VivyC~-~G~ra~~~~~~L-~~~G~~~v~~~~GG~~~W 360 (372)
..--+.++-++|. +|.|+-..+..| ...|++ +--..||+.+.
T Consensus 83 ~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKal 126 (334)
T COG2603 83 AFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKAL 126 (334)
T ss_pred HHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHH
Confidence 1223457777794 567888888888 667875 44456887654
No 116
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=92.52 E-value=0.42 Score=47.14 Aligned_cols=100 Identities=26% Similarity=0.313 Sum_probs=62.8
Q ss_pred ccHHHHHHhcC--CC--CeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc-
Q 017392 78 VSVDWLHANLR--EP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL- 152 (372)
Q Consensus 78 is~~~l~~~l~--~~--~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~- 152 (372)
|++-+|.++-+ .+ +..|||+| |.+.|..||+-.|.|++..- |+..+++|+..+..+
T Consensus 309 isv~el~~~~~~~~~~VrFFiVDcR---------paeqynaGHlstaFhlDc~l----------mlqeP~~Fa~av~sLl 369 (669)
T KOG3636|consen 309 ISVIELTSHDEISSGSVRFFIVDCR---------PAEQYNAGHLSTAFHLDCVL----------MLQEPEKFAIAVNSLL 369 (669)
T ss_pred hhHHHhhcccccccCceEEEEEecc---------chhhcccccchhhhcccHHH----------HhcCHHHHHHHHHHHH
Confidence 56666654332 22 46799997 77899999999999998664 344577887765544
Q ss_pred -----CCCCC-----CeEEEEcCCCCc----hHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017392 153 -----GLENK-----DGLVVYDGKGIF----SAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (372)
Q Consensus 153 -----gi~~~-----~~vVvy~~~g~~----~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (372)
.+..+ ..+.+.+. |.. -.-++..++-+-+-.-|.++.||+.+..
T Consensus 370 ~aqrqtie~~s~aggeHlcfmGs-Gr~EED~YmnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 370 CAQRQTIERDSNAGGEHLCFMGS-GRDEEDNYMNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHhhhccccCCcceEEEecc-CcchHHHHHHHHHHHHHhcCceEEEEecchHHHHH
Confidence 22222 34444422 211 1334444555556557999999998765
No 117
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=91.80 E-value=0.037 Score=55.99 Aligned_cols=94 Identities=20% Similarity=0.154 Sum_probs=63.7
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc--
Q 017392 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL-- 152 (372)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~~-- 152 (372)
-+-|+++++..+ +.+.++|.| ...+|..+|+++++|+|+.. .+. ++. ++..+
T Consensus 621 ~prmsAedl~~~---~~l~v~d~r---------~~~ef~r~~~s~s~nip~~~-~ea------------~l~-~~~~l~~ 674 (725)
T KOG1093|consen 621 CPRISAEDLIWL---KMLYVLDTR---------QESEFQREHFSDSINIPFNN-HEA------------DLD-WLRFLPG 674 (725)
T ss_pred CccccHHHHHHH---HHHHHHhHH---------HHHHHHHhhccccccCCccc-hHH------------HHH-HhhcchH
Confidence 456888888776 468899996 45899999999999999882 221 111 11111
Q ss_pred -CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHH
Q 017392 153 -GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPR 195 (372)
Q Consensus 153 -gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~ 195 (372)
.-..+..+|++... .-.+++....+..+-+.++.++++|+.+
T Consensus 675 ~~~~~~~~~v~~~~~-~K~~~e~~~~~~~mk~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 675 IVCSEGKKCVVVGKN-DKHAAERLTELYVMKVPRICILHDGFNN 717 (725)
T ss_pred hHHhhCCeEEEeccc-hHHHHHHhhHHHHhcccHHHHHHHHHhh
Confidence 11245666777553 3346666667777778888899999873
No 118
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.68 E-value=1.4 Score=35.86 Aligned_cols=91 Identities=13% Similarity=0.144 Sum_probs=47.3
Q ss_pred cCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCC--CCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCC
Q 017392 245 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPR--KGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 322 (372)
Q Consensus 245 is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~--~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~ 322 (372)
++++++.+....+=..||-.|+..|=.|.-.... ...+.--+. ..+||..-- .-+-.+.+.++..+.+. +
T Consensus 16 i~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~~---~iT~~dV~~f~~Al~ea----e 87 (130)
T COG3453 16 ISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTGG---GITEADVEAFQRALDEA----E 87 (130)
T ss_pred CCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCCC---CCCHHHHHHHHHHHHHh----C
Confidence 4667777665544456899999776433211000 000000111 123333210 00111234555666643 5
Q ss_pred CcEEEEcCCchhHHHHHHHHH
Q 017392 323 KPVVTACGTGVTACILALGLN 343 (372)
Q Consensus 323 ~~VivyC~~G~ra~~~~~~L~ 343 (372)
.||+.||++|.||..+|.+-+
T Consensus 88 gPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 88 GPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred CCEEeeecCCchHHHHHHHHH
Confidence 799999999999998776544
No 119
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=88.56 E-value=0.18 Score=43.70 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=39.6
Q ss_pred hhhhccCcccc-----ccCchhhhhhhhccccccCCCCcc-------ccccccCCccchhh-hhhcccccc
Q 017392 7 TRRLVHSSFSI-----SYKPQVFTSLLNKKLFYSRPKHTH-------TTLKTSSSQSPCVM-SSLAAGRRA 64 (372)
Q Consensus 7 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~ 64 (372)
.+.+-+|..++ ||||+.+||+.+++.+|||+.-.- .|++++ -|++. .++++++..
T Consensus 166 ~kIFTLP~d~~iYpaHdY~G~~~stV~EEk~~NPRLTk~~eeFv~IM~NLnL~---yPk~Id~aVpanm~~ 233 (237)
T KOG0814|consen 166 SKIFTLPEDYLIYPAHDYKGFLVSTVWEEKNLNPRLTKSKEEFVKIMKNLNLP---YPKQIDKAVPANMVC 233 (237)
T ss_pred HHheeCCCceEEeeccccCceEeeehhhhhccCcccccCHHHHHHHHHhcCCC---ChhhhCcccchhhcc
Confidence 34566787776 999999999999999999996543 455555 55565 455555443
No 120
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=85.54 E-value=2.6 Score=34.79 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=21.2
Q ss_pred CCCCCcEEEEcCCch-hHHH--HHHHHHHcCCC
Q 017392 319 ISLEKPVVTACGTGV-TACI--LALGLNRLGKH 348 (372)
Q Consensus 319 i~~~~~VivyC~~G~-ra~~--~~~~L~~~G~~ 348 (372)
+..+++|+|+|..|. ||.. +++++...|++
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 566789999999995 7663 34455666764
No 121
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=85.06 E-value=0.17 Score=51.31 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=57.7
Q ss_pred ccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcC--CCC
Q 017392 244 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEG--ISL 321 (372)
Q Consensus 244 ~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~g--i~~ 321 (372)
.++++++... +...++|.|...|| +.+|+++++|+|+. +.+. +++....-.+ -..
T Consensus 623 rmsAedl~~~---~~l~v~d~r~~~ef-----------~r~~~s~s~nip~~-~~ea--------~l~~~~~l~~~~~~~ 679 (725)
T KOG1093|consen 623 RISAEDLIWL---KMLYVLDTRQESEF-----------QREHFSDSINIPFN-NHEA--------DLDWLRFLPGIVCSE 679 (725)
T ss_pred cccHHHHHHH---HHHHHHhHHHHHHH-----------HHhhccccccCCcc-chHH--------HHHHhhcchHhHHhh
Confidence 3555555544 45779999999999 89999999999998 2221 1111100001 123
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHHH
Q 017392 322 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 360 (372)
Q Consensus 322 ~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~W 360 (372)
++.++++.....-++.....+..+-+....++++|+...
T Consensus 680 ~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 680 GKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred CCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 455566655444455555555555577888999999843
No 122
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=84.95 E-value=3.4 Score=33.22 Aligned_cols=83 Identities=22% Similarity=0.207 Sum_probs=37.0
Q ss_pred cccHHHHHHhcCCCCeEEEEeecCCCCCCCC--chh----hh--hhCCCCCceecCcccccccCCCCCCCCCCH---HHH
Q 017392 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRN--PFQ----EY--QVAHIPGALFFDVDGVADRTTNLPHMLPSE---EAF 145 (372)
Q Consensus 77 ~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~--~~~----~y--~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~---~~~ 145 (372)
.++++++.++-+.+=-.||+.|. +.+.. |.. +- +.| + .-+|+|+..- -++. +.|
T Consensus 14 Q~~~~d~~~la~~GfktVInlRp---d~E~~~qp~~~~~~~~a~~~G-l-~y~~iPv~~~----------~~~~~~v~~f 78 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLRP---DGEEPGQPSSAEEAAAAEALG-L-QYVHIPVDGG----------AITEEDVEAF 78 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S----TTSTTT-T-HHCHHHHHHHCT---EEEE----TT----------T--HHHHHHH
T ss_pred CCCHHHHHHHHHCCCcEEEECCC---CCCCCCCCCHHHHHHHHHHcC-C-eEEEeecCCC----------CCCHHHHHHH
Confidence 48999999877764458999982 11100 000 00 111 1 2356665531 1233 445
Q ss_pred HHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHH
Q 017392 146 AAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRV 180 (372)
Q Consensus 146 ~~~l~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~ 180 (372)
.+.|..+ ..+|++||..|.+ +..+|. |..
T Consensus 79 ~~~l~~~----~~Pvl~hC~sG~R-a~~l~~-l~~ 107 (110)
T PF04273_consen 79 ADALESL----PKPVLAHCRSGTR-ASALWA-LAQ 107 (110)
T ss_dssp HHHHHTT----TTSEEEE-SCSHH-HHHHHH-HHH
T ss_pred HHHHHhC----CCCEEEECCCChh-HHHHHH-HHh
Confidence 5555543 4699999998764 555544 443
No 123
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=82.35 E-value=0.78 Score=42.41 Aligned_cols=100 Identities=22% Similarity=0.350 Sum_probs=59.4
Q ss_pred cCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCcccccccccccc-----CCCC---CCHHHHHHHHHH
Q 017392 245 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA-----SQTL---LPADELKKRFEQ 316 (372)
Q Consensus 245 is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~-----~~~~---~~~~~l~~~~~~ 316 (372)
++.+|+.+.+..++.+++|+|+ ...||.+|+++-+..+... .-.+ .+.....+.+.
T Consensus 6 ~s~~wlnr~l~~~nllllDCRs---------------es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~- 69 (343)
T KOG1717|consen 6 KSVAWLNRQLELGNLLLLDCRS---------------ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFP- 69 (343)
T ss_pred HHHHHHHhhcccCceEEEecCC---------------ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCcccccccc-
Confidence 5678999999888899999998 2578999988766554321 1000 01001001110
Q ss_pred cCCCCCCcEEEEcCC--------chhHHHHHHH---HHHcCCCCceEecccHHHHhcC
Q 017392 317 EGISLEKPVVTACGT--------GVTACILALG---LNRLGKHDVAVYDGSWTEWGAQ 363 (372)
Q Consensus 317 ~gi~~~~~VivyC~~--------G~ra~~~~~~---L~~~G~~~v~~~~GG~~~W~~~ 363 (372)
.--+..++|.|..+ |. ++..... ++..|+. ++.+.|||....++
T Consensus 70 -~~c~~v~vilyD~~~~e~e~~~~~-~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 70 -ARCGTVTVILYDESSAEWEEETGA-ESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred -ccCCcceeeecccccccccccchh-hhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 01123578999865 22 3333333 4556874 88899999876654
No 124
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=82.00 E-value=8.4 Score=31.99 Aligned_cols=53 Identities=26% Similarity=0.429 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHH-HHHcCCCceEEecCCHHHHHhCCCCcc
Q 017392 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWM-FRVFGHDRVWVLDGGLPRWRASGYDVE 204 (372)
Q Consensus 143 ~~~~~~l~~~gi~~~~~vVvy~~~g~~~a~ra~~~-L~~~G~~~v~~L~GG~~~W~~~g~pv~ 204 (372)
+.|.+.+.. .+.+|++||..|. ++..+|.+ +...|.+.-.++. .-++.|+.++
T Consensus 76 ~~f~~~~~~----~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~----~~~~~G~~~~ 129 (135)
T TIGR01244 76 ETFRAAIGA----AEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVR----RAQAAGYDLS 129 (135)
T ss_pred HHHHHHHHh----CCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHH----HHHHcCCCcc
Confidence 445555542 3589999999888 46555443 3445764322332 2255666655
No 125
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=81.72 E-value=3.3 Score=35.55 Aligned_cols=42 Identities=33% Similarity=0.417 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEcCCch-hHHH-HHHHHHHcCCCC
Q 017392 307 ADELKKRFEQEGISLEKPVVTACGTGV-TACI-LALGLNRLGKHD 349 (372)
Q Consensus 307 ~~~l~~~~~~~gi~~~~~VivyC~~G~-ra~~-~~~~L~~~G~~~ 349 (372)
.+.++++|.-.--.+ .+|+++|..|- |... ++.+|..+|...
T Consensus 110 ~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 110 AEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVPD 153 (164)
T ss_dssp HHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred hHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence 566777766442233 69999999985 5554 455667789863
No 126
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=80.13 E-value=6.3 Score=32.25 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=39.6
Q ss_pred CCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCch-hH
Q 017392 257 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGV-TA 335 (372)
Q Consensus 257 ~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~G~-ra 335 (372)
+-..|||.++..++. . .....+. -.++|+.+..... .....+++-+.+... ...+++|+|+|..|. ||
T Consensus 27 gi~~VI~l~~~~~~~----~----~~~~~~~-~~~~~~~D~~~~~-~~~~~~~~~~~i~~~-~~~~~~vlVHC~~G~~Rs 95 (139)
T cd00127 27 GITHVLNVAKEVPNE----N----LFLSDFN-YLYVPILDLPSQD-ISKYFDEAVDFIDDA-REKGGKVLVHCLAGVSRS 95 (139)
T ss_pred CCCEEEEcccCCCCc----c----cCCCCce-EEEEEceeCCCCC-hHHHHHHHHHHHHHH-HhcCCcEEEECCCCCchh
Confidence 335799999887740 0 0122221 3456655433111 000012222333321 334689999999996 76
Q ss_pred HHH--HHHHHHcCC
Q 017392 336 CIL--ALGLNRLGK 347 (372)
Q Consensus 336 ~~~--~~~L~~~G~ 347 (372)
..+ ++.+...|+
T Consensus 96 ~~~~~~~l~~~~~~ 109 (139)
T cd00127 96 ATLVIAYLMKTLGL 109 (139)
T ss_pred HHHHHHHHHHHcCC
Confidence 633 344555554
No 127
>PLN02727 NAD kinase
Probab=79.66 E-value=6.8 Score=42.69 Aligned_cols=86 Identities=26% Similarity=0.211 Sum_probs=44.1
Q ss_pred ccCHHHHHHHhhCCCcEEEeccCCcccCCCCCC-CCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCC
Q 017392 244 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPE-PRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 322 (372)
Q Consensus 244 ~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~-~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~ 322 (372)
-++++++....+.+=-.||+.|+..|-.+.... -....+..-| .-+|+|... ...++.+++++..+...-...
T Consensus 268 Qpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL-~yVhIPVs~-----~~apt~EqVe~fa~~l~~slp 341 (986)
T PLN02727 268 QVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKI-EVVKIPVEV-----RTAPSAEQVEKFASLVSDSSK 341 (986)
T ss_pred CCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCC-eEEEeecCC-----CCCCCHHHHHHHHHHHHhhcC
Confidence 357888877665543479999997762111000 0000001111 134555432 122344555544443211346
Q ss_pred CcEEEEcCCchhH
Q 017392 323 KPVVTACGTGVTA 335 (372)
Q Consensus 323 ~~VivyC~~G~ra 335 (372)
+||++||.+|.+.
T Consensus 342 kPVLvHCKSGarR 354 (986)
T PLN02727 342 KPIYLHSKEGVWR 354 (986)
T ss_pred CCEEEECCCCCch
Confidence 8999999999843
No 128
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=76.18 E-value=8.4 Score=33.72 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=19.9
Q ss_pred CCCCCcEEEEcCCch-hHH--HHHHHHHHcCCC
Q 017392 319 ISLEKPVVTACGTGV-TAC--ILALGLNRLGKH 348 (372)
Q Consensus 319 i~~~~~VivyC~~G~-ra~--~~~~~L~~~G~~ 348 (372)
....++|+|+|..|. ||+ .+++.+...|..
T Consensus 102 ~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 102 LSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 456679999998885 554 344566665544
No 129
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=69.73 E-value=3.9 Score=35.25 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=25.3
Q ss_pred cCCCCCCeEEEEcCCC----CchHHHHHHHHHHcCCCceEEecCCHHH
Q 017392 152 LGLENKDGLVVYDGKG----IFSAARVWWMFRVFGHDRVWVLDGGLPR 195 (372)
Q Consensus 152 ~gi~~~~~vVvy~~~g----~~~a~ra~~~L~~~G~~~v~~L~GG~~~ 195 (372)
+|++++..+++.+-.| +.....++.+|+.+|..++..||||-..
T Consensus 95 iG~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 95 IGVTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp EEE-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred EEEeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 4566666666554322 3446788889999999999999999654
No 130
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=69.12 E-value=4.2 Score=35.18 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=16.3
Q ss_pred CCCCcEEEEcCCch-hHHH-HHHHHHHcC
Q 017392 320 SLEKPVVTACGTGV-TACI-LALGLNRLG 346 (372)
Q Consensus 320 ~~~~~VivyC~~G~-ra~~-~~~~L~~~G 346 (372)
..+++|+++|.+|. |+.. ++.+|-++|
T Consensus 131 ~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 131 ENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 35689999999884 7775 555666666
No 131
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=66.20 E-value=7.7 Score=38.63 Aligned_cols=85 Identities=16% Similarity=0.293 Sum_probs=49.9
Q ss_pred CcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHH----------c-CCCCCCcEE
Q 017392 258 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ----------E-GISLEKPVV 326 (372)
Q Consensus 258 ~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~----------~-gi~~~~~Vi 326 (372)
.+.|||+|+.++| ..||+-.|.|++-.-+.+.. ++++..+.. . .+..+.++.
T Consensus 326 rFFiVDcRpaeqy-----------naGHlstaFhlDc~lmlqeP------~~Fa~av~sLl~aqrqtie~~s~aggeHlc 388 (669)
T KOG3636|consen 326 RFFIVDCRPAEQY-----------NAGHLSTAFHLDCVLMLQEP------EKFAIAVNSLLCAQRQTIERDSNAGGEHLC 388 (669)
T ss_pred EEEEEeccchhhc-----------ccccchhhhcccHHHHhcCH------HHHHHHHHHHHHHHHHhhhccccCCcceEE
Confidence 3679999999999 79999999998876555432 333222211 1 122233443
Q ss_pred EEcCCchh------HHHHHHHHHHcCCCCceEecccHHHHh
Q 017392 327 TACGTGVT------ACILALGLNRLGKHDVAVYDGSWTEWG 361 (372)
Q Consensus 327 vyC~~G~r------a~~~~~~L~~~G~~~v~~~~GG~~~W~ 361 (372)
+ -++|.. -...+..|. .+-.-|.++.||+..-.
T Consensus 389 f-mGsGr~EED~YmnMviA~FlQ-Knk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 389 F-MGSGRDEEDNYMNMVIAMFLQ-KNKLYVSFVQGGYKKLH 427 (669)
T ss_pred E-eccCcchHHHHHHHHHHHHHh-cCceEEEEecchHHHHH
Confidence 3 355432 122333343 34445899999997654
No 132
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=64.46 E-value=4.2 Score=34.99 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=25.1
Q ss_pred CCCCCCcEEEEc-C----CchhHHHHHHHHHHcCCCCceEecccHHH
Q 017392 318 GISLEKPVVTAC-G----TGVTACILALGLNRLGKHDVAVYDGSWTE 359 (372)
Q Consensus 318 gi~~~~~VivyC-~----~G~ra~~~~~~L~~~G~~~v~~~~GG~~~ 359 (372)
|++++..+++.| . .|..-..++.+|+.+|..+...||||-+.
T Consensus 96 G~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 96 GVTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp EE-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred EEeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 455666666655 4 36777788889999999999999999754
No 133
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=63.09 E-value=16 Score=33.53 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=19.9
Q ss_pred CCCCcEEEEcCCch-hHH-HHHHHHHHcCCC
Q 017392 320 SLEKPVVTACGTGV-TAC-ILALGLNRLGKH 348 (372)
Q Consensus 320 ~~~~~VivyC~~G~-ra~-~~~~~L~~~G~~ 348 (372)
..+.+|+|+|..|. |+. .++..|-..|+.
T Consensus 168 ~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 168 KNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 46678999998874 555 445555557764
No 134
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=62.13 E-value=19 Score=31.14 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=14.4
Q ss_pred CCCCCcEEEEcCCch-hHHH
Q 017392 319 ISLEKPVVTACGTGV-TACI 337 (372)
Q Consensus 319 i~~~~~VivyC~~G~-ra~~ 337 (372)
...+.+|+|+|..|. ||..
T Consensus 95 ~~~g~~V~VHC~aGigRSgt 114 (166)
T PTZ00242 95 STPPETIAVHCVAGLGRAPI 114 (166)
T ss_pred ccCCCeEEEECCCCCCHHHH
Confidence 356889999999885 5553
No 135
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=54.69 E-value=15 Score=29.88 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCch-hHHH--HHHHHHHcCCC
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGV-TACI--LALGLNRLGKH 348 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~-ra~~--~~~~L~~~G~~ 348 (372)
+++.+.+... ...+.+|+|+|..|. ||+. +++++...|++
T Consensus 60 ~~~~~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 60 DQAVEFIENA-ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHHHHHHHHH-HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhhhhh-hcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 4444555543 456789999999986 6553 34445556663
No 136
>PLN02727 NAD kinase
Probab=53.37 E-value=43 Score=36.80 Aligned_cols=87 Identities=14% Similarity=0.081 Sum_probs=46.9
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhh---hhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHH
Q 017392 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY---QVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (372)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y---~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~~~l~~ 151 (372)
...++++++.++.+.+=-.||+.|......+....++- +..-| .-+|+|+.. ...|+.+++++....
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL-~yVhIPVs~---------~~apt~EqVe~fa~~ 335 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKI-EVVKIPVEV---------RTAPSAEQVEKFASL 335 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCC-eEEEeecCC---------CCCCCHHHHHHHHHH
Confidence 34689999988766533579999832110000000000 00101 234566532 224566666666555
Q ss_pred cCCCCCCeEEEEcCCCCchH
Q 017392 152 LGLENKDGLVVYDGKGIFSA 171 (372)
Q Consensus 152 ~gi~~~~~vVvy~~~g~~~a 171 (372)
+.-...+||++||..|.+++
T Consensus 336 l~~slpkPVLvHCKSGarRA 355 (986)
T PLN02727 336 VSDSSKKPIYLHSKEGVWRT 355 (986)
T ss_pred HHhhcCCCEEEECCCCCchH
Confidence 52245689999999988554
No 137
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=52.21 E-value=29 Score=30.24 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHc--CCCCCCeEEEEcCCCCchHHH--HHHHHHHcCCC
Q 017392 138 MLPSEEAFAAAVSAL--GLENKDGLVVYDGKGIFSAAR--VWWMFRVFGHD 184 (372)
Q Consensus 138 ~~p~~~~~~~~l~~~--gi~~~~~vVvy~~~g~~~a~r--a~~~L~~~G~~ 184 (372)
..|+.+++.+.+..+ -..++..|+|.|..|..+++. ++|+|.+.|..
T Consensus 84 ~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 84 TVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 344445555544433 234556999999987655553 55777776664
No 138
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=51.89 E-value=25 Score=35.99 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHH
Q 017392 310 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 358 (372)
Q Consensus 310 l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~ 358 (372)
|.+++++. -+.|||++-+.--.+-.++..|..+|| +++.|.||-.
T Consensus 508 L~eil~~~---~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k~ 552 (673)
T KOG0333|consen 508 LIEILESN---FDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGKS 552 (673)
T ss_pred HHHHHHhC---CCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCcc
Confidence 44444433 467899999987778889999999998 5999999863
No 139
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=51.83 E-value=25 Score=36.01 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCH
Q 017392 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (372)
Q Consensus 137 ~~~p~~~~~~~~l~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~ 193 (372)
.|+...+++.+++..+.-..+.++|||-+.-. .+-.++..|..+|| +++.|.||-
T Consensus 497 ~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk-~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 497 EMVSEDEKRKKLIEILESNFDPPIIIFVNTKK-GADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred EEecchHHHHHHHHHHHhCCCCCEEEEEechh-hHHHHHHHHhhccc-eEEEeeCCc
Confidence 45666777877777766556778888866432 26678889999999 799999983
No 140
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=48.62 E-value=51 Score=26.86 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=21.3
Q ss_pred CCCCCeEEEEcCCCCchHH--HHHHHHHHcCCC
Q 017392 154 LENKDGLVVYDGKGIFSAA--RVWWMFRVFGHD 184 (372)
Q Consensus 154 i~~~~~vVvy~~~g~~~a~--ra~~~L~~~G~~ 184 (372)
...+.+|+|+|..|..+++ .+++++...|++
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 4567899999998864444 355566666763
No 141
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=43.93 E-value=63 Score=29.79 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHcC--CCCCCeEEEEcCCCCchHHH-HHHHHHHcCC
Q 017392 137 HMLPSEEAFAAAVSALG--LENKDGLVVYDGKGIFSAAR-VWWMFRVFGH 183 (372)
Q Consensus 137 ~~~p~~~~~~~~l~~~g--i~~~~~vVvy~~~g~~~a~r-a~~~L~~~G~ 183 (372)
+..|+.+.+++++..+. +..+..|+|+|..|..++.. ++..|-..|+
T Consensus 148 g~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~~Gm 197 (241)
T PTZ00393 148 GDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEFGM 197 (241)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34566666555555432 34677899999988666553 3344444565
No 142
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=43.64 E-value=23 Score=28.75 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCCCCc--EEEEcCCchhHHHHHHHHHHc-CCCCceEec
Q 017392 309 ELKKRFEQEGISLEKP--VVTACGTGVTACILALGLNRL-GKHDVAVYD 354 (372)
Q Consensus 309 ~l~~~~~~~gi~~~~~--VivyC~~G~ra~~~~~~L~~~-G~~~v~~~~ 354 (372)
=+.++++.+++++++- |+|.+.....|+.=+.+++++ |+.+|-+++
T Consensus 25 Ll~~ii~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~~Gw~~Vplmc 73 (117)
T TIGR01796 25 LLTELMERNELTPEDLISVIFTVTEDLHADFPAAAARGLPGWTDVPVMC 73 (117)
T ss_pred HHHHHHHHcCCCHHHEEEEEEEecCcccccChHHHHHhccCCCCcceec
Confidence 3556777788887653 567777888899888999998 999998875
No 143
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=43.40 E-value=24 Score=30.41 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCch-hHHHHHHHHHH-cCCC
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGV-TACILALGLNR-LGKH 348 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~-ra~~~~~~L~~-~G~~ 348 (372)
+.+.+.++-.--..+.||+++|.+|. |...+...|+. .|+.
T Consensus 77 ~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~ 119 (164)
T PF03162_consen 77 EQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWS 119 (164)
T ss_dssp HHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCC
Confidence 44544443221124579999998884 77777777776 4664
No 144
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=43.21 E-value=60 Score=29.11 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCcEEEEcCCch---hHHHHHHHHHHcCCCCceEec
Q 017392 322 EKPVVTACGTGV---TACILALGLNRLGKHDVAVYD 354 (372)
Q Consensus 322 ~~~VivyC~~G~---ra~~~~~~L~~~G~~~v~~~~ 354 (372)
..+|++.|++|+ ....++..|+..|+. |.++-
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~~ 83 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVLL 83 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEEE
Confidence 678999998775 466778888889964 66553
No 145
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=42.17 E-value=32 Score=26.75 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=27.3
Q ss_pred CCcEEEEcCCchhHHHHHHHH----HHcCCCCceEecccHHHH
Q 017392 322 EKPVVTACGTGVTACILALGL----NRLGKHDVAVYDGSWTEW 360 (372)
Q Consensus 322 ~~~VivyC~~G~ra~~~~~~L----~~~G~~~v~~~~GG~~~W 360 (372)
.++|++.|++|..++.++.-+ ++.|++ +.+...+..+-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 468999999999888766544 456874 66666666553
No 146
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=41.80 E-value=53 Score=25.38 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=25.5
Q ss_pred cEEEEcCCchhHHHH-HH----HHHHcCCCCceEecccHHHHh
Q 017392 324 PVVTACGTGVTACIL-AL----GLNRLGKHDVAVYDGSWTEWG 361 (372)
Q Consensus 324 ~VivyC~~G~ra~~~-~~----~L~~~G~~~v~~~~GG~~~W~ 361 (372)
+|++.|++|..++.. +. .|.+.|++ +.+...+..+-.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~~ 45 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEIE 45 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHHh
Confidence 699999999965544 33 45667884 667666666554
No 147
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.51 E-value=59 Score=29.29 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCCCCcEEEE-cCCchhHHHHHH--------------------HHHHcCCCCceEe-cccHHHHhcC
Q 017392 308 DELKKRFEQEGISLEKPVVTA-CGTGVTACILAL--------------------GLNRLGKHDVAVY-DGSWTEWGAQ 363 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~Vivy-C~~G~ra~~~~~--------------------~L~~~G~~~v~~~-~GG~~~W~~~ 363 (372)
.-...+++.+.+.+.+.|.-. |++|+.|+..+. -|+.+||.||.+. ..|+.+|...
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 345556666678888777655 788887765543 2778999998754 4567888775
No 148
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=41.43 E-value=20 Score=29.48 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=29.1
Q ss_pred EEEEcCCc-hhHHHHHHHHHHc----CCCCceEecccHHHHh
Q 017392 325 VVTACGTG-VTACILALGLNRL----GKHDVAVYDGSWTEWG 361 (372)
Q Consensus 325 VivyC~~G-~ra~~~~~~L~~~----G~~~v~~~~GG~~~W~ 361 (372)
|+|.|.++ .||.++-.+|+.+ +-.++.++-.|+.+|.
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~~ 42 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAWP 42 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSSTT
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeecccc
Confidence 67889765 5888888888777 5567899999998773
No 149
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=39.02 E-value=31 Score=27.37 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=26.5
Q ss_pred CcEEEEcCCchhHHHHHHHH----HHcCCCCceEecccHHHH
Q 017392 323 KPVVTACGTGVTACILALGL----NRLGKHDVAVYDGSWTEW 360 (372)
Q Consensus 323 ~~VivyC~~G~ra~~~~~~L----~~~G~~~v~~~~GG~~~W 360 (372)
++|++.|++|..++.++..+ +..|++ +.+-..+..+-
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e~ 42 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATEG 42 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 36899999999888777654 456874 66666666554
No 150
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=38.76 E-value=38 Score=29.41 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHc--CCCCCCeEEEEcCCCCchHHH-HHHHHHHcC
Q 017392 140 PSEEAFAAAVSAL--GLENKDGLVVYDGKGIFSAAR-VWWMFRVFG 182 (372)
Q Consensus 140 p~~~~~~~~l~~~--gi~~~~~vVvy~~~g~~~a~r-a~~~L~~~G 182 (372)
|+.+++.+.+.++ -+.++..|+++|..|..++.. ++-+|..+|
T Consensus 114 Pd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 114 PDFAAAWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp --HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 4444443343333 234678999999988777765 444555555
No 151
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=38.57 E-value=99 Score=26.61 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=15.1
Q ss_pred CCCCeEEEEcCCCCchHHH
Q 017392 155 ENKDGLVVYDGKGIFSAAR 173 (372)
Q Consensus 155 ~~~~~vVvy~~~g~~~a~r 173 (372)
.++.+|+|+|..|..+++.
T Consensus 96 ~~g~~V~VHC~aGigRSgt 114 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPI 114 (166)
T ss_pred cCCCeEEEECCCCCCHHHH
Confidence 4678999999988766654
No 152
>PRK12361 hypothetical protein; Provisional
Probab=37.65 E-value=1.2e+02 Score=31.36 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=24.0
Q ss_pred cccccccccccCCCCCCHHHHHHHHHHc--CCCCCCcEEEEcCCch-hHH
Q 017392 290 KCIPFPQMLDASQTLLPADELKKRFEQE--GISLEKPVVTACGTGV-TAC 336 (372)
Q Consensus 290 v~ip~~~l~~~~~~~~~~~~l~~~~~~~--gi~~~~~VivyC~~G~-ra~ 336 (372)
.++|..+... .+.+++++.++.. ....+++|+|+|..|. ||.
T Consensus 146 l~iPi~D~~~-----p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa 190 (547)
T PRK12361 146 LNIPILDHSV-----PTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSV 190 (547)
T ss_pred EEeecCCCCC-----CcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHH
Confidence 4666544322 2345555544321 2345688999999886 554
No 153
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=35.85 E-value=88 Score=26.89 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=23.1
Q ss_pred CCCCCcEEEEcCCchhHH---HHHHHHHHcCCCCceE
Q 017392 319 ISLEKPVVTACGTGVTAC---ILALGLNRLGKHDVAV 352 (372)
Q Consensus 319 i~~~~~VivyC~~G~ra~---~~~~~L~~~G~~~v~~ 352 (372)
..+..+|++.|+.|+... .++..|...|++ |.+
T Consensus 22 ~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 367789999999887544 566677788985 766
No 154
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=35.36 E-value=88 Score=29.33 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=29.8
Q ss_pred HHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEeccc
Q 017392 310 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGS 356 (372)
Q Consensus 310 l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG 356 (372)
+.+.+++.+++.++++++. +.|..|..+++.|..+|..++.+++=.
T Consensus 110 f~~~L~~~~~~~~~~vlil-GaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 110 IAKLLASYQVPPDLVVALR-GSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred HHHHHHhcCCCCCCeEEEE-CCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3344554566655666665 455556666777888999888887653
No 155
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.52 E-value=47 Score=32.87 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHHH
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTE 359 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~~ 359 (372)
..|-.++.+. .+.++||+|++...+...+.+|+.+|+. .--+.|-+..
T Consensus 289 ~yLV~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqmsq 336 (476)
T KOG0330|consen 289 TYLVYLLNEL---AGNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMSQ 336 (476)
T ss_pred hhHHHHHHhh---cCCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhhH
Confidence 3455555532 3478999999999999999999999995 5567776653
No 156
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=34.05 E-value=42 Score=26.05 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=25.5
Q ss_pred cEEEEcCCchhHHHHHHHH----HHcCCCCceEecccHHHH
Q 017392 324 PVVTACGTGVTACILALGL----NRLGKHDVAVYDGSWTEW 360 (372)
Q Consensus 324 ~VivyC~~G~ra~~~~~~L----~~~G~~~v~~~~GG~~~W 360 (372)
+|++.|++|..++.++..+ +..|++ +.+...+..+-
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 4889999999988776654 456774 66666666544
No 157
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=33.99 E-value=1.2e+02 Score=23.68 Aligned_cols=48 Identities=21% Similarity=0.201 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccH
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 357 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~ 357 (372)
+.+.+.+.+. .+.+.++++||.+-..+..++..|...+. ++..+.|+.
T Consensus 15 ~~i~~~i~~~-~~~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 15 EALLELLKEH-LKKGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred HHHHHHHHhc-ccCCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 3444445442 33567899999998878788888887665 588888875
No 158
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=33.78 E-value=71 Score=25.94 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=23.3
Q ss_pred cEEEEcCCc-hhHHHHHHHHHHcCCCCceEecccHH
Q 017392 324 PVVTACGTG-VTACILALGLNRLGKHDVAVYDGSWT 358 (372)
Q Consensus 324 ~VivyC~~G-~ra~~~~~~L~~~G~~~v~~~~GG~~ 358 (372)
+|++.|.+. .||.++-.+|+.++-.++.++-.|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 577888544 57777777777765445666766654
No 159
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=33.10 E-value=90 Score=29.28 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecC
Q 017392 144 AFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 191 (372)
Q Consensus 144 ~~~~~l~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~G 191 (372)
-|...|+..++..++.+++....|. +..++..|...|..+|.+++-
T Consensus 109 Gf~~~L~~~~~~~~~~vlilGaGGa--arAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 109 AIAKLLASYQVPPDLVVALRGSGGM--AKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred HHHHHHHhcCCCCCCeEEEECCcHH--HHHHHHHHHHCCCCEEEEEeC
Confidence 3555666667766667888866442 334566788999999999984
No 160
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=32.92 E-value=82 Score=25.42 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=18.3
Q ss_pred CCCeEEEEcCCCCchHHH--HHHHHHHcCC
Q 017392 156 NKDGLVVYDGKGIFSAAR--VWWMFRVFGH 183 (372)
Q Consensus 156 ~~~~vVvy~~~g~~~a~r--a~~~L~~~G~ 183 (372)
.+.+|+|+|..|..++.. +++++...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 467999999988755543 3455555554
No 161
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=32.80 E-value=1.1e+02 Score=28.89 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCCC--CcEEEEcCCchhHHHHHHHHHHcCCCCceEecccH
Q 017392 308 DELKKRFEQEGISLE--KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 357 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~--~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~ 357 (372)
.-+.+.|.+.+++.+ ..-++.++.|.-|..+++.|..+|.+++.+++=..
T Consensus 109 ~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 109 IGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred HHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 445555665554333 24455567777777788889999998898887643
No 162
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.65 E-value=81 Score=25.85 Aligned_cols=82 Identities=12% Similarity=0.110 Sum_probs=43.6
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhh-------hhCCCCCceecCccc--ccccCCCCCCCCCCHHHHH
Q 017392 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY-------QVAHIPGALFFDVDG--VADRTTNLPHMLPSEEAFA 146 (372)
Q Consensus 76 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y-------~~gHIPgAi~ip~~~--l~~~~~~~~~~~p~~~~~~ 146 (372)
+.++++++.+.-..+=..||.-|.+ .+-.....| +..-+. -.+||... +.. -+.+.|.
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRPD---gEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~~~iT~---------~dV~~f~ 80 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRPD---GEEPGQPGFAAIAAAAEAAGLT-YTHIPVTGGGITE---------ADVEAFQ 80 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCCC---CCCCCCCChHHHHHHHHhcCCc-eEEeecCCCCCCH---------HHHHHHH
Confidence 4578888877665543568888732 100000011 111122 33555443 111 1245677
Q ss_pred HHHHHcCCCCCCeEEEEcCCCCchHHHHH
Q 017392 147 AAVSALGLENKDGLVVYDGKGIFSAARVW 175 (372)
Q Consensus 147 ~~l~~~gi~~~~~vVvy~~~g~~~a~ra~ 175 (372)
+.|.+. +-+|+.||.+|.+ +..+|
T Consensus 81 ~Al~ea----egPVlayCrsGtR-s~~ly 104 (130)
T COG3453 81 RALDEA----EGPVLAYCRSGTR-SLNLY 104 (130)
T ss_pred HHHHHh----CCCEEeeecCCch-HHHHH
Confidence 777765 5799999998865 54443
No 163
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=32.36 E-value=60 Score=30.01 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=23.1
Q ss_pred CcEEEEcCCch---hHHHHHHHHHHcCCCCceEe
Q 017392 323 KPVVTACGTGV---TACILALGLNRLGKHDVAVY 353 (372)
Q Consensus 323 ~~VivyC~~G~---ra~~~~~~L~~~G~~~v~~~ 353 (372)
++|++.|+.|+ ..-.++..|...|+ +|.+|
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence 67999998765 56677778888898 47766
No 164
>PLN02645 phosphoglycolate phosphatase
Probab=32.17 E-value=61 Score=30.88 Aligned_cols=112 Identities=11% Similarity=0.187 Sum_probs=58.2
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhCC-CCCceecCcccccccCCCC----CCCCCCHHHHHHHH
Q 017392 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAH-IPGALFFDVDGVADRTTNL----PHMLPSEEAFAAAV 149 (372)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~y~~gH-IPgAi~ip~~~l~~~~~~~----~~~~p~~~~~~~~l 149 (372)
....+.+.+.+++.+-+.+++|+- . .-+..+| |||+... +..+....... .....+.+++.+.|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~D~D---------G-tl~~~~~~~~ga~e~-l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 13 AQLLTLENADELIDSVETFIFDCD---------G-VIWKGDKLIEGVPET-LDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred cccCCHHHHHHHHHhCCEEEEeCc---------C-CeEeCCccCcCHHHH-HHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 344667788888877689999992 2 3444444 6777432 22222211100 01233456666777
Q ss_pred HHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCC---CceEEecCC-H-HHHHhCCCCc
Q 017392 150 SALGLENKDGLVVYDGKGIFSAARVWWMFRVFGH---DRVWVLDGG-L-PRWRASGYDV 203 (372)
Q Consensus 150 ~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~---~~v~~L~GG-~-~~W~~~g~pv 203 (372)
..+|++-...-|+-. ...+...|+..++ ++|+++... + ..-...|..+
T Consensus 82 ~~lGi~~~~~~I~ts------~~~~~~~l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~ 134 (311)
T PLN02645 82 ESLGLNVTEEEIFSS------SFAAAAYLKSINFPKDKKVYVIGEEGILEELELAGFQY 134 (311)
T ss_pred HHCCCCCChhhEeeh------HHHHHHHHHhhccCCCCEEEEEcCHHHHHHHHHCCCEE
Confidence 888886544433331 1223345665554 347766542 2 2334556654
No 165
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=32.10 E-value=47 Score=27.31 Aligned_cols=37 Identities=8% Similarity=0.162 Sum_probs=24.7
Q ss_pred EEEEcCCc-hhHHHHHHHHHHcCCCCceEecccHHHHh
Q 017392 325 VVTACGTG-VTACILALGLNRLGKHDVAVYDGSWTEWG 361 (372)
Q Consensus 325 VivyC~~G-~ra~~~~~~L~~~G~~~v~~~~GG~~~W~ 361 (372)
|++.|.+. .||.++..+|+.+.-.++.+.-.|...|.
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~~ 38 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAWV 38 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCCC
Confidence 46777554 47777777777654345777777777663
No 166
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=31.41 E-value=1.7e+02 Score=21.78 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=24.3
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHcCCCCceEec
Q 017392 322 EKPVVTACGTGVTACILALGLNRLGKHDVAVYD 354 (372)
Q Consensus 322 ~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~ 354 (372)
...-++.++.|..+...+..|...|...+.+++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~ 54 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCD 54 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 334466677798888888888888766777765
No 167
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.66 E-value=59 Score=32.41 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHcCCCCCCcEEEEcCCchhH----------HHHHHHHHHcCCCCceEecccHHHHhcCC
Q 017392 304 LLPADELKKRFEQEGISLEKPVVTACGTGVTA----------CILALGLNRLGKHDVAVYDGSWTEWGAQP 364 (372)
Q Consensus 304 ~~~~~~l~~~~~~~gi~~~~~VivyC~~G~ra----------~~~~~~L~~~G~~~v~~~~GG~~~W~~~~ 364 (372)
..+.++++++++. .++.+||+--.++ ......|..+|++ +.++-|||.+|..++
T Consensus 18 i~~ee~l~~ll~~------~~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~-~ivLigd~ta~IgDp 81 (401)
T COG0162 18 ITDEEELRKLLEE------GPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHK-PIVLIGDATAMIGDP 81 (401)
T ss_pred cCcHHHHHHHHhc------CCceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCe-EEEEecccceecCCC
Confidence 4456777777763 2889999643332 1122235678985 889999999999885
No 168
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.65 E-value=46 Score=26.19 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=27.1
Q ss_pred cEEEEcCCchhHHHHHHHH----HHcCCCCceEecccHHHHh
Q 017392 324 PVVTACGTGVTACILALGL----NRLGKHDVAVYDGSWTEWG 361 (372)
Q Consensus 324 ~VivyC~~G~ra~~~~~~L----~~~G~~~v~~~~GG~~~W~ 361 (372)
+|++.|++|..|+.++.-+ +..|+ ++.+...+..+-.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi-~~~i~a~~~~e~~ 42 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGV-PLEAAAGAYGSHY 42 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEEeeHHHHH
Confidence 4889999999888887654 45687 4777777766543
No 169
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=30.13 E-value=54 Score=24.53 Aligned_cols=32 Identities=31% Similarity=0.650 Sum_probs=21.7
Q ss_pred cEEEEcCCchhHHHHH-HH----HHHcCCCCceEeccc
Q 017392 324 PVVTACGTGVTACILA-LG----LNRLGKHDVAVYDGS 356 (372)
Q Consensus 324 ~VivyC~~G~ra~~~~-~~----L~~~G~~~v~~~~GG 356 (372)
+|++.|++|..++..+ .. ++..|++ +....++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 4899999998877655 44 5567864 5554444
No 170
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=30.02 E-value=39 Score=27.70 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=29.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHc----CCCceEEecCCHHHH
Q 017392 160 LVVYDGKGIFSAARVWWMFRVF----GHDRVWVLDGGLPRW 196 (372)
Q Consensus 160 vVvy~~~g~~~a~ra~~~L~~~----G~~~v~~L~GG~~~W 196 (372)
|++.|.....+|.++..+|+.+ +-.++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 4566765556688888889888 667899999998877
No 171
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=29.78 E-value=1.3e+02 Score=28.33 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=23.8
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHcCCCCceEeccc
Q 017392 322 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGS 356 (372)
Q Consensus 322 ~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG 356 (372)
.++|++. +.|.-+..+++.|..+|..++.+++-.
T Consensus 127 ~k~vlIl-GaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQL-GAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CCEEEEE-CCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3555555 555566667777888999889888754
No 172
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=29.73 E-value=81 Score=32.83 Aligned_cols=27 Identities=33% Similarity=0.682 Sum_probs=22.0
Q ss_pred HHHHHHHHHH-cCCCceEEec-CCHHHHHh
Q 017392 171 AARVWWMFRV-FGHDRVWVLD-GGLPRWRA 198 (372)
Q Consensus 171 a~ra~~~L~~-~G~~~v~~L~-GG~~~W~~ 198 (372)
++.++|+|+. -|| -|+++| ||..+|.-
T Consensus 165 ~~~vaw~l~~tk~~-giK~vnpgG~~a~~~ 193 (556)
T TIGR03121 165 AAYVAWLLKATKGY-GIKVVNPGGVEAWGW 193 (556)
T ss_pred HHHHHHHHHhccce-EEEEECCCchhhhcc
Confidence 6678899987 567 689888 99999965
No 173
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=29.03 E-value=1.4e+02 Score=27.28 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEe
Q 017392 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVL 189 (372)
Q Consensus 139 ~p~~~~~~~~l~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L 189 (372)
.|+++.|++.++..|++.....+++|++.. =....+..|+..|.++
T Consensus 160 KP~~~afE~a~k~agi~~p~~t~FfDDS~~-----NI~~ak~vGl~tvlv~ 205 (244)
T KOG3109|consen 160 KPSEEAFEKAMKVAGIDSPRNTYFFDDSER-----NIQTAKEVGLKTVLVG 205 (244)
T ss_pred cCCHHHHHHHHHHhCCCCcCceEEEcCchh-----hHHHHHhccceeEEEE
Confidence 488999999999999997777888877532 1224567898766654
No 174
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=28.60 E-value=1.1e+02 Score=31.68 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=23.1
Q ss_pred CCcEEEEcCCchh---HHHHHHHHHHcCCCCceEe
Q 017392 322 EKPVVTACGTGVT---ACILALGLNRLGKHDVAVY 353 (372)
Q Consensus 322 ~~~VivyC~~G~r---a~~~~~~L~~~G~~~v~~~ 353 (372)
.++|+|.|+.|+. .-.++..|...||+ |.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 3679999988764 44667778888985 7665
No 175
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=27.93 E-value=1.9e+02 Score=23.25 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHcCCCCCCcEEEEcCCchhHHH---HHHHHHHcCCCCceEe
Q 017392 305 LPADELKKRFEQEGISLEKPVVTACGTGVTACI---LALGLNRLGKHDVAVY 353 (372)
Q Consensus 305 ~~~~~l~~~~~~~gi~~~~~VivyC~~G~ra~~---~~~~L~~~G~~~v~~~ 353 (372)
.+.+++.+.+++. .++.+|++.+.....-.. +...++.+|+.++.+.
T Consensus 69 v~~~~L~~~l~~~--~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 69 ISLEELEAEIAQL--NKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred cCHHHHHHHHHhh--CCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 3557778778764 567789999987765443 4455788999988664
No 176
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=27.90 E-value=77 Score=24.62 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=20.2
Q ss_pred CcEEEEcCCchhHHHHHH-----HHHHcCCC
Q 017392 323 KPVVTACGTGVTACILAL-----GLNRLGKH 348 (372)
Q Consensus 323 ~~VivyC~~G~ra~~~~~-----~L~~~G~~ 348 (372)
.+|++.|+.|.-++.... +|+.+|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 468999999998775543 58889995
No 177
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=27.70 E-value=1.5e+02 Score=27.71 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=25.5
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHH
Q 017392 322 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 358 (372)
Q Consensus 322 ~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~ 358 (372)
++++++ .+.|..+..++..|...|+.+|.+++=...
T Consensus 123 ~k~vlV-lGaGg~a~ai~~aL~~~g~~~V~v~~R~~~ 158 (278)
T PRK00258 123 GKRILI-LGAGGAARAVILPLLDLGVAEITIVNRTVE 158 (278)
T ss_pred CCEEEE-EcCcHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 344444 466777777888888999888888866543
No 178
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=27.56 E-value=76 Score=26.04 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=29.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcc
Q 017392 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVE 204 (372)
Q Consensus 160 vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~ 204 (372)
|++.|.....+|..+..+|+.+.-.++.+...|+.+| .|.++.
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~--~g~~~~ 43 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW--VGGGAD 43 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC--CCCCCC
Confidence 4556665555688888888876645688888898877 344443
No 179
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=27.52 E-value=88 Score=25.13 Aligned_cols=41 Identities=7% Similarity=0.147 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCchHHH--HHHHHHHcCCC
Q 017392 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAAR--VWWMFRVFGHD 184 (372)
Q Consensus 143 ~~~~~~l~~~gi~~~~~vVvy~~~g~~~a~r--a~~~L~~~G~~ 184 (372)
+.+.+.+... ...+..|+|+|..|..+++- +++++...|++
T Consensus 60 ~~~~~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 60 DQAVEFIENA-ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHHHHHHHHH-HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhhhhh-hcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 3444455543 44678899999988765543 55566667763
No 180
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=27.27 E-value=1.5e+02 Score=28.03 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=27.2
Q ss_pred HHHHHHcCCC-CCCcEEEEcCCchhHHHHHHHHHHcCCCCceEeccc
Q 017392 311 KKRFEQEGIS-LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGS 356 (372)
Q Consensus 311 ~~~~~~~gi~-~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG 356 (372)
.+.+++.+++ +++++++...+| .|..+++.|..+|..++.+++=.
T Consensus 112 ~~~l~~~~~~~~~k~vlvlGaGG-aarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 112 IRAIKESGFDIKGKTMVLLGAGG-ASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred HHHHHhcCCCcCCCEEEEECCcH-HHHHHHHHHHHCCCCEEEEEeCC
Confidence 3344444454 345565554444 45556677778899888888643
No 181
>PRK10126 tyrosine phosphatase; Provisional
Probab=26.89 E-value=90 Score=26.12 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=28.6
Q ss_pred CcEEEEcCCc-hhHHHHHHHHHHcCCCCceEecccHHHHh
Q 017392 323 KPVVTACGTG-VTACILALGLNRLGKHDVAVYDGSWTEWG 361 (372)
Q Consensus 323 ~~VivyC~~G-~ra~~~~~~L~~~G~~~v~~~~GG~~~W~ 361 (372)
++|+|.|.+. .||.++-.+|+.++- ++.+...|...|.
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~~ 41 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGALV 41 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCCC
Confidence 4789999665 588888888888763 4777888886663
No 182
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=26.63 E-value=42 Score=27.33 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCCCCc--EEEEcCCchhHHHHHHHHHHc-CCCCceEec
Q 017392 308 DELKKRFEQEGISLEKP--VVTACGTGVTACILALGLNRL-GKHDVAVYD 354 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~--VivyC~~G~ra~~~~~~L~~~-G~~~v~~~~ 354 (372)
+=+.++++.+++.+++- |+|.+.....|..-+.+++++ |+.+|-++.
T Consensus 24 eLl~~i~~~N~l~~~dIvSi~FT~T~DL~a~fPA~a~R~~~g~~~Vpl~c 73 (118)
T PF07736_consen 24 ELLEEILERNELSPEDIVSIIFTVTPDLDAAFPAAAARELPGWDDVPLMC 73 (118)
T ss_dssp HHHHHHHHHTT--GGGEEEEEEEE-TT--SS-TCHHHHHTTTGTTSEEEE
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEeCCCcCccChHHHHHccCCCCccceec
Confidence 33566777888888753 566777778888888899998 999998764
No 183
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=26.56 E-value=96 Score=25.93 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=28.5
Q ss_pred CcEEEEcCCc-hhHHHHHHHHHHcCCCCceEecccHHHHh
Q 017392 323 KPVVTACGTG-VTACILALGLNRLGKHDVAVYDGSWTEWG 361 (372)
Q Consensus 323 ~~VivyC~~G-~ra~~~~~~L~~~G~~~v~~~~GG~~~W~ 361 (372)
++|+|.|.+. .||.++..+|+.+. .++.+.-.|...|.
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~~~~ 41 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVHGLV 41 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccccCCC
Confidence 4789999654 58888888888765 35778888887663
No 184
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=26.23 E-value=2.6e+02 Score=22.09 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecc
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDG 355 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~G 355 (372)
+++++.+++ ++.++.|++.|.-+.-+...........+++++++.|
T Consensus 45 ~~l~~~i~~--~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G 90 (116)
T PF03610_consen 45 EKLEEAIEE--LDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHHH--CCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES
T ss_pred HHHHHHHHh--ccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEec
Confidence 445555643 5677889999976554444444444455556777765
No 185
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=26.14 E-value=1.3e+02 Score=31.58 Aligned_cols=38 Identities=24% Similarity=0.144 Sum_probs=32.1
Q ss_pred CCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHH
Q 017392 320 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 358 (372)
Q Consensus 320 ~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~ 358 (372)
..+..+||||++-..+..++..|...|+ ++..|.|++.
T Consensus 255 ~~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l~ 292 (572)
T PRK04537 255 SEGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDVP 292 (572)
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCCC
Confidence 3467899999998888899999999998 4888988853
No 186
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.04 E-value=1.8e+02 Score=26.30 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCCCchHH--------------------HHHHHHHHcCCCceEEec-CCHHHHHh
Q 017392 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAA--------------------RVWWMFRVFGHDRVWVLD-GGLPRWRA 198 (372)
Q Consensus 142 ~~~~~~~l~~~gi~~~~~vVvy~~~g~~~a~--------------------ra~~~L~~~G~~~v~~L~-GG~~~W~~ 198 (372)
+...+.+++.+.+.+...|+=.....++.++ .+-..|+.+|+.||.+.. -|..+|.+
T Consensus 58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 3456778888899988888766443333332 233448889998888665 35666654
No 187
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=25.93 E-value=1.2e+02 Score=31.34 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=30.6
Q ss_pred cEEEEcCCchhHHHHHHHHHHcCCCCceEecccHH
Q 017392 324 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 358 (372)
Q Consensus 324 ~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~ 358 (372)
.+||+|++-..+..++..|+..|++ +..+.|++.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCe-EEEecCCCC
Confidence 5999999999999999999999985 899999864
No 188
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=25.59 E-value=1.3e+02 Score=31.76 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHH
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 358 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~ 358 (372)
+++...+.. .+++..|+||++-..+-.++..|+..|+ ++..|.||+.
T Consensus 225 ~~l~~~l~~---~~~~~~IIFc~tr~~~e~la~~L~~~g~-~v~~~Ha~l~ 271 (607)
T PRK11057 225 DQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSRGI-SAAAYHAGLD 271 (607)
T ss_pred HHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHhCCC-CEEEecCCCC
Confidence 455555542 3567899999998888889999999998 4889999873
No 189
>PRK05852 acyl-CoA synthetase; Validated
Probab=25.33 E-value=1.3e+02 Score=30.43 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=44.1
Q ss_pred cccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHH
Q 017392 292 IPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 358 (372)
Q Consensus 292 ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~ 358 (372)
+.+.++... ...+...|.+.|+.+++.|.++|..+.....+++++..+|.- +..++-++.
T Consensus 44 ~Ty~~l~~~------~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~-~v~l~~~~~ 103 (534)
T PRK05852 44 ISYRDLARL------VDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLV-VVPLDPALP 103 (534)
T ss_pred ccHHHHHHH------HHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcE-EeecCCCCC
Confidence 445555432 356777788889999999999999999999888888888873 333444443
No 190
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=25.28 E-value=77 Score=23.86 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=22.7
Q ss_pred CcEEEEcCCchhHHHH-HH----HHHHcCCCCceEecccHHHH
Q 017392 323 KPVVTACGTGVTACIL-AL----GLNRLGKHDVAVYDGSWTEW 360 (372)
Q Consensus 323 ~~VivyC~~G~ra~~~-~~----~L~~~G~~~v~~~~GG~~~W 360 (372)
++|+++|++|..++.. .. .++..|.. +.+...++.+.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~~~ 42 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAIDEL 42 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchhhC
Confidence 3689999999876644 33 34555653 44555555544
No 191
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.99 E-value=1.3e+02 Score=30.42 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHH
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 358 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~ 358 (372)
+++.+.+.+ ..+++..||||.+-..+-.++..|+..|+. +..|.||+.
T Consensus 214 ~~l~~~l~~--~~~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 214 EDLLRFIRK--EFKGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred HHHHHHHHH--hcCCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 455555543 234567799999988888999999999984 888999874
No 192
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=24.76 E-value=5.3e+02 Score=25.87 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=75.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH----hCCCCcccCCCcchhHhhhhhHHHHHHhhcCCCC
Q 017392 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR----ASGYDVESSASGDAILKASAASEAIEKVYQGQVG 231 (372)
Q Consensus 156 ~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~----~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (372)
+++.+++.+. |.+ +.-++..|...|+.+|.+.|--+..=. +-|..+.... .+...+. ..
T Consensus 177 ~~~~vlvIGA-Gem-~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~-------------el~~~l~--~~ 239 (414)
T COG0373 177 KDKKVLVIGA-GEM-GELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALE-------------ELLEALA--EA 239 (414)
T ss_pred ccCeEEEEcc-cHH-HHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHH-------------HHHHhhh--hC
Confidence 6778888866 443 667778899999999999998775322 1221111110 0001110 12
Q ss_pred CcceeeccCCccccCHHHHHHHhhCCC-cEEEeccCCcccCCCCCCCCCCCCCccCCCcccccccccc
Q 017392 232 PTTFQTKFQPHLIWTLEQVKRNIEEGT-YQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQML 298 (372)
Q Consensus 232 ~~~~~~~~~~~~~is~~~l~~~~~~~~-~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~ 298 (372)
..-|...-.++.+++.+.+...+.... .++||.--|...+. ..|.++|...+..+++.
T Consensus 240 DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~---------~v~~l~~v~l~~iDDL~ 298 (414)
T COG0373 240 DVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEP---------EVGELPNVFLYTIDDLE 298 (414)
T ss_pred CEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCc---------cccCcCCeEEEehhhHH
Confidence 334555667788899999988876543 58999988877732 46778888877777764
No 193
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=24.74 E-value=84 Score=24.90 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=19.6
Q ss_pred CcEEEEcCCchhHHHHHHHH----HHcCCC
Q 017392 323 KPVVTACGTGVTACILALGL----NRLGKH 348 (372)
Q Consensus 323 ~~VivyC~~G~ra~~~~~~L----~~~G~~ 348 (372)
++|++.|+.|..++..+.-+ +..|.+
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 57999999999999887433 445664
No 194
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=24.65 E-value=81 Score=27.14 Aligned_cols=46 Identities=20% Similarity=0.091 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHc-CC
Q 017392 138 MLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVF-GH 183 (372)
Q Consensus 138 ~~p~~~~~~~~l~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~-G~ 183 (372)
+-++.+.+.+.|..+--....+|+|+|..|..+..-+...|+.+ |+
T Consensus 72 ~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W 118 (164)
T PF03162_consen 72 VPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGW 118 (164)
T ss_dssp ----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB
T ss_pred ccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCC
Confidence 34556777777765432345799999999988888888888764 44
No 195
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=24.38 E-value=1.3e+02 Score=25.47 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCCCchHHH-HHHHHHHcCCCc
Q 017392 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAAR-VWWMFRVFGHDR 185 (372)
Q Consensus 142 ~~~~~~~l~~~gi~~~~~vVvy~~~g~~~a~r-a~~~L~~~G~~~ 185 (372)
.+.|.+.|..+--.+ .+++++|..|.-+..- ++.+|..+|++.
T Consensus 110 ~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 110 AEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVPD 153 (164)
T ss_dssp HHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred hHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence 567777777665445 6999999988766554 455667788853
No 196
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=24.37 E-value=1.3e+02 Score=25.27 Aligned_cols=33 Identities=6% Similarity=0.124 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHHHHHc-CCCCCCcEEEEcCCch
Q 017392 301 SQTLLPADELKKRFEQE-GISLEKPVVTACGTGV 333 (372)
Q Consensus 301 ~~~~~~~~~l~~~~~~~-gi~~~~~VivyC~~G~ 333 (372)
+...+.++.+.+.+.-. .++++..++|+|..|.
T Consensus 102 d~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~ 135 (149)
T PF14566_consen 102 DHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGR 135 (149)
T ss_dssp TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSS
T ss_pred CcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCC
Confidence 34445555555444321 3577889999999885
No 197
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=24.36 E-value=1.4e+02 Score=31.30 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHH
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 358 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~ 358 (372)
+.+.+.+... .+.+.|+||++-..+..++..|+..|+. +..|.||+.
T Consensus 213 ~~l~~~l~~~---~~~~~IIf~~sr~~~e~la~~L~~~g~~-~~~~H~~l~ 259 (591)
T TIGR01389 213 KFLLDYLKKH---RGQSGIIYASSRKKVEELAERLESQGIS-ALAYHAGLS 259 (591)
T ss_pred HHHHHHHHhc---CCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence 4555555542 2568899999988888888899999984 888999874
No 198
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=24.12 E-value=1.6e+02 Score=28.50 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=39.7
Q ss_pred ccccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCC
Q 017392 291 CIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH 348 (372)
Q Consensus 291 ~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~ 348 (372)
.+.|.++... ...+...|.+.|+.+++.|+++|........+.+++..+|..
T Consensus 21 ~~Ty~~l~~~------v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 21 SLTYKQLYER------VRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp EEEHHHHHHH------HHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred EEEHHHHHHH------HHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 3445555443 356777888889999999999999998888888888888975
No 199
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=23.95 E-value=7.7e+02 Score=24.97 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=35.2
Q ss_pred CccCCCccccccccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceE
Q 017392 283 SGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAV 352 (372)
Q Consensus 283 ~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~ 352 (372)
.|.+.|-.-+=.+++.+..+++ .+..+.|.+.|. +.|.++|-+|.-+.-+...|...|.+.|.+
T Consensus 330 vgdV~Gk~vIIVDDIIdTG~Tl---~~aa~~Lk~~GA---~~V~~~~THglfs~~A~~rl~~s~i~~Ivv 393 (439)
T PTZ00145 330 VGNVYDSDVIIVDDMIDTSGTL---CEAAKQLKKHGA---RRVFAFATHGLFSGPAIERIEASPLEEVVV 393 (439)
T ss_pred cCCCCCCEEEEEcceeCcHHHH---HHHHHHHHHcCC---CEEEEEEEcccCChhHHHHHhcCCCCEEEE
Confidence 3455555444455554433332 333444554443 467777777777766666666666665543
No 200
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.62 E-value=2.8e+02 Score=21.48 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCC
Q 017392 138 MLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHD 184 (372)
Q Consensus 138 ~~p~~~~~~~~l~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~ 184 (372)
.+|...++-+.|++. +.++++..+++..........|+.+|++
T Consensus 15 ~ipga~e~l~~L~~~----g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 15 PIPGAVEALDALRER----GKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp E-TTHHHHHHHHHHT----TSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred cCcCHHHHHHHHHHc----CCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 345555666677765 4678888777666556777889999995
No 201
>PTZ00110 helicase; Provisional
Probab=23.32 E-value=1.6e+02 Score=30.52 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHH
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 358 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~ 358 (372)
..+.+++... ...+.++||||++-..+..++..|+..|+. +..+.|++.
T Consensus 364 ~~L~~ll~~~-~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 364 GKLKMLLQRI-MRDGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred HHHHHHHHHh-cccCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCCc
Confidence 4455555543 225678999999988888899999999985 677888763
No 202
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=22.75 E-value=1.4e+02 Score=28.61 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCC-CceEecccH
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSW 357 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~-~v~~~~GG~ 357 (372)
+.+.+++.. +.++++++++|++-..+..++..|+..+.. ++..|.|++
T Consensus 210 ~~l~~l~~~--~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 210 SSLERLLEF--IKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred HHHHHHHHH--hhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 444555542 345678999999988888888899887764 688999986
No 203
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=22.67 E-value=2e+02 Score=27.03 Aligned_cols=45 Identities=13% Similarity=0.324 Sum_probs=26.0
Q ss_pred HHHHHHcCCC-CCCcEEEEcCCchhHHHHHHHHHHcCCCCceEeccc
Q 017392 311 KKRFEQEGIS-LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGS 356 (372)
Q Consensus 311 ~~~~~~~gi~-~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG 356 (372)
...+++.+.+ +++.+++. ++|.-+..++..|...|+++|.+++-.
T Consensus 114 ~~~l~~~~~~~~~k~vlI~-GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 114 VRNLREHGVDVKGKKLTVI-GAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred HHHHHhcCCCcCCCEEEEE-CCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3334433333 34555555 445444456677888899878877643
No 204
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=22.55 E-value=1.8e+02 Score=28.87 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHH----HcCCCceEEecC
Q 017392 158 DGLVVYDGKGIFSAARVWWMFR----VFGHDRVWVLDG 191 (372)
Q Consensus 158 ~~vVvy~~~g~~~a~ra~~~L~----~~G~~~v~~L~G 191 (372)
+.+++-|+.|..++++-+.+|+ ..|.+++.+.+-
T Consensus 379 ~~iifaCDAGMGSSAMGAsilrkk~k~agl~~I~V~n~ 416 (472)
T COG2213 379 KKIIFACDAGMGSSAMGASILRKKLKNAGLNDISVTNY 416 (472)
T ss_pred eEEEEEEcCCCChhhhhHHHHHHHHHhCCCCceeEeeh
Confidence 4678889888777777666664 567776776663
No 205
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=22.52 E-value=1.7e+02 Score=27.60 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCC---CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHH
Q 017392 143 EAFAAAVSALGLE---NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194 (372)
Q Consensus 143 ~~~~~~l~~~gi~---~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~ 194 (372)
.-|.+.|...++. +++.+++....|. +-.+++.|...|.+++.++|--..
T Consensus 109 ~G~~~~L~~~~~~~~~~~~~vlilGAGGA--arAv~~aL~~~g~~~i~V~NRt~~ 161 (283)
T COG0169 109 IGFLRALKEFGLPVDVTGKRVLILGAGGA--ARAVAFALAEAGAKRITVVNRTRE 161 (283)
T ss_pred HHHHHHHHhcCCCcccCCCEEEEECCcHH--HHHHHHHHHHcCCCEEEEEeCCHH
Confidence 3466677776533 2467888866442 445778899999999999996443
No 206
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=22.49 E-value=1.5e+02 Score=21.57 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHcCCC
Q 017392 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHD 184 (372)
Q Consensus 155 ~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~ 184 (372)
..+..|++|...++....++-..|...|++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 356789999988887788888899999985
No 207
>PRK12361 hypothetical protein; Provisional
Probab=22.41 E-value=2.3e+02 Score=29.38 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHcC--CCCCCeEEEEcCCCCchHHH--HHHHHHH
Q 017392 140 PSEEAFAAAVSALG--LENKDGLVVYDGKGIFSAAR--VWWMFRV 180 (372)
Q Consensus 140 p~~~~~~~~l~~~g--i~~~~~vVvy~~~g~~~a~r--a~~~L~~ 180 (372)
|+.++|.+.+..+. ...+.+|+|+|..|..+|+. ++|++..
T Consensus 156 p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~ 200 (547)
T PRK12361 156 PTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCK 200 (547)
T ss_pred CcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHh
Confidence 55667766655542 34567899999988655543 4554433
No 208
>PRK13530 arsenate reductase; Provisional
Probab=22.31 E-value=1.4e+02 Score=24.47 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=24.9
Q ss_pred CcEEEEcCCc-hhHHHHHHHHHHcCCCCceEecccHH
Q 017392 323 KPVVTACGTG-VTACILALGLNRLGKHDVAVYDGSWT 358 (372)
Q Consensus 323 ~~VivyC~~G-~ra~~~~~~L~~~G~~~v~~~~GG~~ 358 (372)
+.|++.|.+. .||.++-.+++.+.-.++.++..|..
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 5688899654 57777777777644346777777763
No 209
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=21.86 E-value=1.6e+02 Score=29.68 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccHH
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 358 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~~ 358 (372)
+.+..++.. .....+|+||++-..+..++..|...|+ ++..|.|++.
T Consensus 231 ~~l~~ll~~---~~~~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~ 277 (460)
T PRK11776 231 PALQRLLLH---HQPESCVVFCNTKKECQEVADALNAQGF-SALALHGDLE 277 (460)
T ss_pred HHHHHHHHh---cCCCceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence 344455542 2345799999998889999999999998 4888888874
No 210
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=21.65 E-value=1.8e+02 Score=28.85 Aligned_cols=36 Identities=14% Similarity=0.032 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecccH
Q 017392 321 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 357 (372)
Q Consensus 321 ~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~GG~ 357 (372)
....+||||++-..+-..+..|...|+ ++..|.|++
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~ 289 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDV 289 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCC
Confidence 346799999998888888889999998 588899886
No 211
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=21.65 E-value=95 Score=25.24 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCCCCCc--EEEEcCCchhHHHHHHHHHHc-CCCCceEec
Q 017392 309 ELKKRFEQEGISLEKP--VVTACGTGVTACILALGLNRL-GKHDVAVYD 354 (372)
Q Consensus 309 ~l~~~~~~~gi~~~~~--VivyC~~G~ra~~~~~~L~~~-G~~~v~~~~ 354 (372)
=+.++++.+++.+++- |+|.+.....|..=+.+++++ |+++|-+++
T Consensus 25 Ll~~i~~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~~~~~~Vplmc 73 (117)
T cd02185 25 LLEEIIERNNIKPEDIISVIFTVTPDLDAAFPAKAARELGGWKYVPLMC 73 (117)
T ss_pred HHHHHHHHcCCCHHHEEEEEEEeCCcccccChHHHHHhcCCCCCcceee
Confidence 3556777788887653 567777888899888899998 666887764
No 212
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=21.54 E-value=7.3e+02 Score=23.87 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred EcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCC---CcccCCCcchhHhhhhhHHHHHHhhcCC-CCCcceeec
Q 017392 163 YDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGY---DVESSASGDAILKASAASEAIEKVYQGQ-VGPTTFQTK 238 (372)
Q Consensus 163 y~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~---pv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 238 (372)
+.....-.+.-++.+|..+|.++|..+| +.+=+-.|+ |+...-. .+.+.+.+... .........
T Consensus 102 ~~~repIsaklvA~lL~~aG~drv~TvD--lH~~qiqgfFdipvdnl~a----------~p~l~~~~~~~~~~~d~vVVS 169 (314)
T COG0462 102 FKPREPISAKLVANLLETAGADRVLTVD--LHAPQIQGFFDIPVDNLYA----------APLLAEYIREKYDLDDPVVVS 169 (314)
T ss_pred cCCCCCEeHHHHHHHHHHcCCCeEEEEc--CCchhhcccCCCccccccc----------hHHHHHHHHHhcCCCCcEEEC
Q ss_pred cCCccccCHHHHHHHhhCCCcEEEeccCCcccCCCCCCCCCCCCCccCCCccccccccccccCCCCCCHHHHHHHHHHcC
Q 017392 239 FQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEG 318 (372)
Q Consensus 239 ~~~~~~is~~~l~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpgAv~ip~~~l~~~~~~~~~~~~l~~~~~~~g 318 (372)
++..-+.-...+.+.++.+ +-+||=|.. .-........ ..|.+.|-..+=.+++.+-.+++ -.-.++|.+.|
T Consensus 170 PD~Ggv~RAr~~A~~L~~~-~a~i~K~R~-~~~~~v~~~~---~~gdV~gk~~iiVDDiIdTgGTi---~~Aa~~Lk~~G 241 (314)
T COG0462 170 PDKGGVKRARALADRLGAP-LAIIDKRRD-SSPNVVEVMN---LIGDVEGKDVVIVDDIIDTGGTI---AKAAKALKERG 241 (314)
T ss_pred CCccHHHHHHHHHHHhCCC-EEEEEEeec-CCCCeEEEee---cccccCCCEEEEEeccccccHHH---HHHHHHHHHCC
Q ss_pred CCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEec
Q 017392 319 ISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 354 (372)
Q Consensus 319 i~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~ 354 (372)
- +.|+++|-+|.-+..+...|+.-.++.|.+-|
T Consensus 242 A---k~V~a~~tH~vfs~~a~~~l~~~~i~~vivTn 274 (314)
T COG0462 242 A---KKVYAAATHGVFSGAALERLEASAIDEVIVTD 274 (314)
T ss_pred C---CeEEEEEEchhhChHHHHHHhcCCCCEEEEeC
No 213
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=21.26 E-value=1e+02 Score=25.30 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=26.6
Q ss_pred cEEEEcCCc-hhHHHHHHHHHHcCCC-CceEecccHHHH
Q 017392 324 PVVTACGTG-VTACILALGLNRLGKH-DVAVYDGSWTEW 360 (372)
Q Consensus 324 ~VivyC~~G-~ra~~~~~~L~~~G~~-~v~~~~GG~~~W 360 (372)
+|++.|.+. .||.++..+|+.+.-. ++.++-.|...+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 588888655 5788888888775433 678888887655
No 214
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
Probab=21.22 E-value=1.4e+02 Score=26.86 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHcCCCCCCcEEEEcCCchhHH
Q 017392 305 LPADELKKRFEQEGISLEKPVVTACGTGVTAC 336 (372)
Q Consensus 305 ~~~~~l~~~~~~~gi~~~~~VivyC~~G~ra~ 336 (372)
.+.+.++++++-.+.+.+++++++|.+-....
T Consensus 44 ~~~~Av~~i~~~K~Rp~~kpLil~~~~~~~l~ 75 (211)
T COG0009 44 TNEEAVERLYEIKQRPSDKPLILHVASLEQLK 75 (211)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHH
Confidence 34578888999889999999999999855433
No 215
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.99 E-value=2.1e+02 Score=28.74 Aligned_cols=46 Identities=24% Similarity=0.228 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEe
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVY 353 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~ 353 (372)
+++..-|.++||.+.+++++.-..+..-....++|-++|.-.|.-+
T Consensus 64 d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlAL 109 (542)
T COG1021 64 DRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLAL 109 (542)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhcc
Confidence 6788889999999999999999998888889999999998766544
No 216
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=20.86 E-value=1.4e+02 Score=27.08 Aligned_cols=35 Identities=14% Similarity=0.022 Sum_probs=22.2
Q ss_pred CCCCCcEEEEcCCchhHH-HHH----HHHHHcCCCCceEe
Q 017392 319 ISLEKPVVTACGTGVTAC-ILA----LGLNRLGKHDVAVY 353 (372)
Q Consensus 319 i~~~~~VivyC~~G~ra~-~~~----~~L~~~G~~~v~~~ 353 (372)
+.++..+|+.|.+....+ .++ .+|+..||.+|++-
T Consensus 134 l~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 134 LNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred cCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 347788999997654322 222 24567799888753
No 217
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.83 E-value=4e+02 Score=21.92 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHcCCCCCCeEEEEcC---CCCchHHHHHHHHHHcCCCceEEecCC------HHHHHhCCCC
Q 017392 141 SEEAFAAAVSALGLENKDGLVVYDG---KGIFSAARVWWMFRVFGHDRVWVLDGG------LPRWRASGYD 202 (372)
Q Consensus 141 ~~~~~~~~l~~~gi~~~~~vVvy~~---~g~~~a~ra~~~L~~~G~~~v~~L~GG------~~~W~~~g~p 202 (372)
++++|.+...+ .+..+|+.|. ........+...|+..|..++.++-|| +..|++.|..
T Consensus 41 s~e~~v~aa~e----~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 41 TPEEIARQAVE----ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred CHHHHHHHHHH----cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
No 218
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=20.61 E-value=1.8e+02 Score=29.06 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHH--cCCCCceEecccHHHHh
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR--LGKHDVAVYDGSWTEWG 361 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~--~G~~~v~~~~GG~~~W~ 361 (372)
.++.+.+.+. .++...-+++|++|..|-.++..|.+ -|-+.+..++||+.+|.
T Consensus 89 ~~la~~L~~~-~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 143 (433)
T PRK08117 89 LKLAEELAEI-TPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRT 143 (433)
T ss_pred HHHHHHHHHh-CCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcC
Confidence 5566666653 22334568899999998876665533 46667888888887764
No 219
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=20.56 E-value=1.5e+02 Score=21.38 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCeEEEEcC-CCCchHHHHHHHHHHcCCCceEEecCC
Q 017392 139 LPSEEAFAAAVSALGLENKDGLVVYDG-KGIFSAARVWWMFRVFGHDRVWVLDGG 192 (372)
Q Consensus 139 ~p~~~~~~~~l~~~gi~~~~~vVvy~~-~g~~~a~ra~~~L~~~G~~~v~~L~GG 192 (372)
.|++.-+...++.+++++...++|=|. .... + ..+.+|+.-|.+..|-
T Consensus 4 KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di---~---~a~~~G~~~ilV~tG~ 52 (75)
T PF13242_consen 4 KPSPGMLEQALKRLGVDPSRCVMVGDSLETDI---E---AAKAAGIDTILVLTGV 52 (75)
T ss_dssp TTSHHHHHHHHHHHTSGGGGEEEEESSTTTHH---H---HHHHTTSEEEEESSSS
T ss_pred CCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHH---H---HHHHcCCcEEEECCCC
Confidence 478888999999999998777666665 3221 2 3567899777777753
No 220
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=20.55 E-value=1.3e+02 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=25.9
Q ss_pred CCCCCcEEEEcCCchhHHHHHHHHHHcCCCCceEec
Q 017392 319 ISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 354 (372)
Q Consensus 319 i~~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~ 354 (372)
+..+.+|.+...+|..|+.++.++...+..++..+.
T Consensus 14 l~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t 49 (255)
T PF00733_consen 14 LRSDKPIGILLSGGLDSSAIAALAARQGGPPIKTFT 49 (255)
T ss_dssp CGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEE
T ss_pred HhcCCCEEEECCCChhHHHHHHHHHHhhCCceeEEE
Confidence 557899999999999999999888884334555443
No 221
>PRK07514 malonyl-CoA synthase; Validated
Probab=20.52 E-value=2e+02 Score=28.70 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchhHHHHHHHHHHcCCC
Q 017392 308 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH 348 (372)
Q Consensus 308 ~~l~~~~~~~gi~~~~~VivyC~~G~ra~~~~~~L~~~G~~ 348 (372)
..+...|.+.|+.+++.|.++|..+.....+.+++..+|..
T Consensus 39 ~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~ 79 (504)
T PRK07514 39 ARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAV 79 (504)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 56777788889999999999999999998888888888874
No 222
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=20.50 E-value=2e+02 Score=29.22 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=23.2
Q ss_pred CCcEEEEcCCchh---HHHHHHHHHHcCCCCceEe
Q 017392 322 EKPVVTACGTGVT---ACILALGLNRLGKHDVAVY 353 (372)
Q Consensus 322 ~~~VivyC~~G~r---a~~~~~~L~~~G~~~v~~~ 353 (372)
.++|+|.|+.|+. +-.++..|...|++ |.++
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 3679999987764 55677778888985 6655
No 223
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=20.43 E-value=1.1e+02 Score=21.97 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=22.5
Q ss_pred cccCHHHHHHHhhC-CCcEEEeccCCccc
Q 017392 243 LIWTLEQVKRNIEE-GTYQLVDARSKARF 270 (372)
Q Consensus 243 ~~is~~~l~~~~~~-~~~~iIDvR~~~e~ 270 (372)
..|+.+++.+++.+ .++.++|+.+-++.
T Consensus 18 ~YiTL~di~~lV~~g~~~~V~D~ktgeDi 46 (64)
T PF07879_consen 18 SYITLEDIAQLVREGEDFKVVDAKTGEDI 46 (64)
T ss_pred eeEeHHHHHHHHHCCCeEEEEECCCCccc
Confidence 45899999999865 46999999986654
No 224
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.38 E-value=5.2e+02 Score=24.87 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=56.8
Q ss_pred CCCCCCCcccHHHHHHhcCC---CCeEEEEeecCCCCCCCCchhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHH
Q 017392 70 SVSPKEPVVSVDWLHANLRE---PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFA 146 (372)
Q Consensus 70 ~~~~~~~~is~~~l~~~l~~---~~~~iiDvR~~~~~~~r~~~~~y~~gHIPgAi~ip~~~l~~~~~~~~~~~p~~~~~~ 146 (372)
......-.|+...+.+++.. ..++.+|.- .. .|.|-.++|.+.+.. ...|.
T Consensus 105 r~~~~ge~isak~~a~lL~~~g~d~vitvD~H-----------~~----~i~~~F~~p~~nl~~-----------~p~~~ 158 (323)
T PRK02458 105 RIAKPREPITAKLVANMLVKAGVDRVLTLDLH-----------AV----QVQGFFDIPVDNLFT-----------VPLFA 158 (323)
T ss_pred cccCCCCCchHHHHHHHHhhcCCCeEEEEecC-----------cH----HhhccccCCceEEEE-----------HHHHH
Confidence 33344557899999888865 257889982 11 244555667766543 12577
Q ss_pred HHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEec
Q 017392 147 AAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLD 190 (372)
Q Consensus 147 ~~l~~~gi~~~~~vVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~ 190 (372)
+++...+.+.+..+|+.-+.|. ..++..+.+.+|. .+.+++
T Consensus 159 ~~l~~~~~~~~~~vvV~pd~Ga--~~~A~~la~~L~~-~~~~~~ 199 (323)
T PRK02458 159 KHYCKKGLSGSDVVVVSPKNSG--IKRARSLAEYLDA-PIAIID 199 (323)
T ss_pred HHHHHhCCCCCceEEEEECCCh--HHHHHHHHHHhCC-CEEEEE
Confidence 7877767655566666655454 5566666777786 355554
No 225
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=20.02 E-value=2.8e+02 Score=24.07 Aligned_cols=46 Identities=28% Similarity=0.226 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCC-CCCcEEEEcCCchhHHHHHHHHHHcCCCCceEecc
Q 017392 309 ELKKRFEQEGIS-LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDG 355 (372)
Q Consensus 309 ~l~~~~~~~gi~-~~~~VivyC~~G~ra~~~~~~L~~~G~~~v~~~~G 355 (372)
-+++.+...|++ +++++++...+|.-+...+..|...|+ +|.++.-
T Consensus 14 ~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R 60 (194)
T cd01078 14 AAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGR 60 (194)
T ss_pred HHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence 344555555554 456777777777777767777777785 6776643
Done!