Citrus Sinensis ID: 017393

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MKATSIFLLAFFLVLLVNGCSAADKTNFSASSGLDPNLIGSRSSNDTTGGSNLVTNSSQTKNVNGNRGDQVNKSVKGADDKNGINKNNTFHPLGSKNADNVQKGNVVPKGKKELSDRKDNLSDEVKSKDVSKEGGPDEDSGKSRKEGTRVEECHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIRRKGTVNLITIKAGNGNCRLDFKDLMAHNSGEDFDNSLKSTYFKFLSKKPTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQRLDMEVPVASLGNSESDNNHGWDNSWDDNWDDEEAPKTPSLPVTPSLSSKGLASRRLSKEGWKD
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEEcccccEEEEEEccccccccccEEEEcccccEEEEEEEEEcccccEEEEEcccccEEEEccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHEEEEEEEEEccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccEEEEEEccccccEEEEEEcccccEccccEEEEEEccccEEEEEEEccccccEEEEEEcccEEEEEcccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKATSIFLLAFFLVLLVNgcsaadktnfsassgldpnligsrssndttggsnlvtnssqtknvngnrgdqvnksvkgaddknginknntfhplgsknadnvqkgnvvpkgkkelsdrkdnlsdevkskdvskeggpdedsgksrkegtrveechssnkcmdEKMQFVACLrvpgndspdlsLLIQNkvkgpltvrisapdyvrleKTKVQLRENEGNELRVSIRRKGTVNLITIKagngncrldfkdlmahnsgedfdnslKSTYFKFlskkptvpvITFAALLILASGCLCvslrcrqlssgkskyqrldmevpvaslgnsesdnnhgwdnswddnwddeeapktpslpvtpslsskglasrrlskegwkd
Flexible Loop (DISEMBL)
MKATSIFLLAFFLVLLVNGCSAADKTNfsassgldpnlIGSRssndttggsnlvtnssqtknvngnrgdqvnksvkgaddknginknntfhplgsknadnvqkgnvvpkgkkelsdrkdnlsdevkskdvskeggpdedsgksrkegtrveechssnkcmdeKMQFVACLRVPGNDSPDLSLLIqnkvkgpltvrisapdyvrlektkvqlrenegnelrvsirrkgtvnlitikagngncRLDFKDLMAHNSGEDFDNSLKSTYFKFLSKKPTVPVITFAALLILASGCLCVSLRCRQlssgkskyqrLDMEVPVASlgnsesdnnhgWDNSWDDNWDDEEAPktpslpvtpslsskglasrrlskegwkd
Low Complexity Region (SEG)
MKATSIfllafflvllvNGCSAADKTNFSASSGLDPNLIGSRSSNDTTGGSNLVTNSSQTKNVNGNRGDQVNKSVKGADDKNGINKNNTFHPLGSKNADNVQKGNVVPKGKKELSDRKDNLSDEVKSKDVSKEGGPDEDSGKSRKEGTRVEECHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIRRKGTVNLITIKAGNGNCRLDFKDLMAHNSGEDFDNSLKSTYFKFLSKKPTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQRLDMEVPVASLGNSESdnnhgwdnswddnwddEEApktpslpvtpslsskGLASRRLSKEGWKD
Disordered region (IsUnstruct)
****SIFLLAFFLVLLVNGCSAA*******************************************************************************************************************************************KMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIRRKGTVNLITIKAGNGNCRLDFKDLMAHNSGEDFDNSLKSTYFKFLSKKPTVPVITFAALLILASGCLCVSLRCRQL************************************************************************
Disordered Region (DISOPRED)
***TSIFLLAFFLVLLVNGCSAA**************************************************************************************************************************************KCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQL************RRKGTVNLITIKAGNGNCRLDFKDLMAHNSGEDFDNSLKSTYFKFLSKKPTVPVITFAALLILASGCLCVSLRCR******************************GWDNSWDDNWDDEE******************************
Disordered Region (DISEMBL)
MKATSIFLLAFFLVLLVNGCSAADKTNFSASSGLDPNLIGSRSSNDTTGGSNLVTNSSQTKNVNGNRGDQVNKSVKGADDKNGINKNNTFHPLGSKNADNVQKGNVVPKGK********************************************SNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIRRKGTVNLITIKAGNGNCRLDFKDLMAHNSGEDFDNSLKSTYFKFLSKKPTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQRLDMEVPVASLGNSESDNNHGWDNSWDDNWDDE*******************************
Disordered Region (DISPRO)
MKATSIFLLAFFLVLLVNGCSAADKTNF****************************************************************************************************************************C*SSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIRRKGTVNLITIKAGNGNCRLDFKDLMAHNSGEDFDNSLKSTYFKFLSKKPTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQRLDMEVPV*******************D**D*********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKATSIFLLAFFLVLLVNGCSAADKTNFSASSGLDPNLIGSRSSNDTTGGSNLVTNSSQTKNVNGNRGDQVNKSVKGADDKNGINKNNTFHPLGSKNADNVQKGNVVPKGKKELSDRKDNLSDEVKSKDVSKEGGPDEDSGKSRKEGTRVEECHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIRRKGTVNLITIKAGNGNCRLDFKDLMAHNSGEDFDNSLKSTYFKFLSKKPTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQRLDMEVPVASLGNSESDNNHGWDNSWDDNWDDEEAPKTPSLPVTPSLSSKGLASRRLSKEGWKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
224072188	288	predicted protein [Populus trichocarpa]	0.747	0.965	0.595	8e-85
449464064	376	PREDICTED: uncharacterized protein LOC10	0.991	0.981	0.464	4e-78
224058306	373	predicted protein [Populus trichocarpa]	0.911	0.908	0.525	3e-77
225426358	381	PREDICTED: uncharacterized protein LOC10	0.908	0.887	0.472	3e-71
255537773	372	conserved hypothetical protein [Ricinus	0.919	0.919	0.5	9e-62
297840019	342	hypothetical protein ARALYDRAFT_474911 [	0.747	0.812	0.428	2e-52
22330420	351	uncharacterized protein [Arabidopsis tha	0.615	0.652	0.462	4e-50
449526531	153	PREDICTED: uncharacterized LOC101224558,	0.411	1.0	0.538	7e-42
125553403	323	hypothetical protein OsI_21071 [Oryza sa	0.561	0.647	0.373	3e-33
326514760	330	predicted protein [Hordeum vulgare subsp	0.561	0.633	0.429	9e-31

>gi|224072188|ref|XP_002303644.1| predicted protein [Populus trichocarpa] gi|222841076|gb|EEE78623.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (819), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 169/284 (59%), Positives = 215/284 (75%), Gaps = 6/284 (2%)

Query: 94  GSKNADNVQKG----NVVPKGKKELSDRKDNLSDEVKSKDVSKEGGPDEDSGKSRKEGTR 149
           GSK+ DN ++G    +   + KK    +K++ S  V+S+D+SKE   D+   +SRKEG R
Sbjct: 6   GSKDNDNAKEGKHNSSEESQAKKGDHSKKEDSSSGVESEDLSKEKN-DKGDTQSRKEGPR 64

Query: 150 VEECHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKV 209
           VEEC  SNKC DE+ + VACLRVPGN+SPDLSLLIQNK KG L+V ISAPD+V LEKTK+
Sbjct: 65  VEECDQSNKCTDEENKLVACLRVPGNESPDLSLLIQNKGKGSLSVTISAPDFVHLEKTKI 124

Query: 210 QLRENEGNELRVSIRRKGTVNLITIKAGNGNCRLDFKDLMAHNSGEDFDNSLKST-YFKF 268
           QL+E E  +++VSI  +G+ NLI ++AGNG C+LD KD +AH  G++FD S KST    F
Sbjct: 125 QLKEKEDKKVKVSITSRGSENLIVLRAGNGQCKLDIKDTIAHYFGKEFDKSHKSTDIINF 184

Query: 269 LSKKPTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQRLDMEVPVASLGNSESDNNH 328
           +S+  T+ V++FAALLILASG +C+S R +  S+  SKYQRL+ME+PV+  G +ES+ N 
Sbjct: 185 MSRTSTIVVLSFAALLILASGWMCISFRRKHPSNNTSKYQRLEMELPVSGEGKTESETND 244

Query: 329 GWDNSWDDNWDDEEAPKTPSLPVTPSLSSKGLASRRLSKEGWKD 372
           GWDNSW D+WDDEEAPK PSLPVTPSLSSKGLASRRLSKE WKD
Sbjct: 245 GWDNSWGDDWDDEEAPKAPSLPVTPSLSSKGLASRRLSKEAWKD 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464064|ref|XP_004149749.1| PREDICTED: uncharacterized protein LOC101203513 [Cucumis sativus]

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 176/379 (46%), Positives = 236/379 (62%), Gaps = 10/379 (2%)

Query: 1   MKATSIFLLAFFLVLLVNGCSAAD-KTNFSASSGLDPNLIGSRSSNDTTGGSNLVTNS-S 58
           MK      + FFL+LL+  C   D K   SA++GLD   +   +  +   G N   NS S
Sbjct: 1   MKTQFRISVGFFLLLLICYCVRVDSKVEDSANNGLDSKTVNKGNDANKDPGPNKDLNSVS 60

Query: 59  QTKNVNGNRGDQVNKS-VKGADDKNGINKNNTFHPLGSKNADNVQKGNVVPKGKKELSDR 117
             K     +   V+K  VK  +DK  I K+     +  + AD V+K + + +  +   D+
Sbjct: 61  AGKEKKSEQQVSVSKEGVKNREDK--IKKDPESETVSKEGADKVKKDDGLGEEGRNKGDK 118

Query: 118 -KDNLSDEVKSKDVSKEGGPDED---SGKSRKEGTRVEECHSSNKCMDEKMQFVACLRVP 173
            K    D   SKD SK  G  E    S   R +G+  E+C SSNKC DE  + VACLRVP
Sbjct: 119 VKGKPVDNSVSKDGSKSSGKGESTVSSASKRNDGSSGEDCDSSNKCTDEAKKLVACLRVP 178

Query: 174 GNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIRRKGTVNLIT 233
           GNDSP L LLIQNK KGPLT +ISAPD+V LEK++VQL+E E  +++VSI   G  N I 
Sbjct: 179 GNDSPQLLLLIQNKGKGPLTAKISAPDFVHLEKSEVQLQERENKKVKVSIGDGGDGNTIV 238

Query: 234 IKAGNGNCRLDFKDLMAHNSGEDFDNSLKSTYFKFLSKKPTVPVITFAALLILASGCLCV 293
           + +G G C LDF+DL+AH++ +D DN  KS++F +L+K   + ++ F  +L +A+  + +
Sbjct: 239 LTSGGGRCSLDFRDLVAHHNAKDSDNVPKSSWFSYLTKPHVIAILAFGVILTIAAVSVII 298

Query: 294 SLRCRQLSSGKSKYQRLDMEVPVASLGNSESDNNHGWDNSWDDNWDDEEAPKTPSLPVTP 353
           S+R +   S  SKYQRLDME+PV+  G + +DNN GW+NSWDDNWDD E P TPSLPVTP
Sbjct: 299 SIRRKNFVSSNSKYQRLDMELPVSLGGKAVADNNDGWENSWDDNWDD-ETPHTPSLPVTP 357

Query: 354 SLSSKGLASRRLSKEGWKD 372
           SLSSKGLASRRL+K+GWKD
Sbjct: 358 SLSSKGLASRRLNKDGWKD 376

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058306|ref|XP_002299479.1| predicted protein [Populus trichocarpa] gi|222846737|gb|EEE84284.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 184/350 (52%), Positives = 242/350 (69%), Gaps = 11/350 (3%)

Query: 29  SASSGLDPNLIGSRSSNDTTGGSNLVTNSSQTKNVNGNRGDQVNKSVKG-ADDKNGINKN 87
           SA +GLDP    + +++   GGSNL +NS++     G +G QV+KS +  ADD N I  +
Sbjct: 29  SAGTGLDPKSDATTNASKEAGGSNLKSNSTEDDKGKG-KGGQVDKSKEDKADDLNNIKMD 87

Query: 88  NTFHPLGSKNADNVQ--KGNVVPKGKKELSD--RKDNLSDEVKSKDVSKEGGPDEDSGKS 143
           +     GSK+ +N +  KGN   + + +  D  +K  LS   +SKD  +E   + D+ +S
Sbjct: 88  SQS---GSKDNENAKEDKGNSSEEFQAKEGDHNKKKGLSGGEESKDFPEEKNDERDT-QS 143

Query: 144 RKEGTRVEECHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVR 203
           RKEG  VEEC  SNKC DE+ + VACLRVPGN+SPDLSLLIQNK KGPL V ISAPD+V 
Sbjct: 144 RKEGPHVEECDPSNKCTDEENKLVACLRVPGNESPDLSLLIQNKGKGPLNVTISAPDFVH 203

Query: 204 LEKTKVQLRENEGNELRVSIRRKGTVNLITIKAGNGNCRLDFKDLMAHNSGEDFDNSLKS 263
           LEKTK+QL+E +  +++VSI   G+ NLI + AG G C+LD KD +AH  G++   S +S
Sbjct: 204 LEKTKIQLQEKDNKKVKVSITGGGSENLIVLTAGKGQCKLDIKDTIAHYLGKELHKSHES 263

Query: 264 T-YFKFLSKKPTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQRLDMEVPVASLGNS 322
                 +S+  T+ V++FAALLILASG +C+S R + LS    +YQRL+ME+PV+  G +
Sbjct: 264 ADIINSMSRTSTIAVLSFAALLILASGWMCISFRRKHLSYNNPRYQRLEMELPVSGGGKT 323

Query: 323 ESDNNHGWDNSWDDNWDDEEAPKTPSLPVTPSLSSKGLASRRLSKEGWKD 372
           ES  N GWDN+W D+WDDEEAPKTPSLPVTPSLSSKGLASRRLSK+GWKD
Sbjct: 324 ESKTNDGWDNNWGDDWDDEEAPKTPSLPVTPSLSSKGLASRRLSKDGWKD 373

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426358|ref|XP_002270995.1| PREDICTED: uncharacterized protein LOC100254757 [Vitis vinifera] gi|297742326|emb|CBI34475.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 166/351 (47%), Positives = 227/351 (64%), Gaps = 13/351 (3%)

Query: 32  SGLDP--NLIGSRSS--NDTTGGSNLVTNSSQTKNVNGNRGDQVNKSVKGADDKNGINKN 87
           SGLDP   ++ + ++  N+T  GS+   +S + +    +  DQV    +G +      K 
Sbjct: 34  SGLDPKKTVVSTHTNIPNETLSGSDSGLDSLKAEQAKKDE-DQVGVPKEGVESTK--EKI 90

Query: 88  NTFHPLGSKNADNVQ--KGNVVPKGKKELSD-RKDNLSDEVKSKDVSKEGGPD---EDSG 141
           ++   L SK ADN    KG++  + + E  D +K+   D  KSK  SKEGG +   E S 
Sbjct: 91  SSIKQLDSKEADNEHTGKGSLSKELETEGGDNKKEKPGDGSKSKQASKEGGNEGVLESSK 150

Query: 142 KSRKEGTRVEECHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDY 201
             +KE  + EEC  SN+C+D+  + VACLRVPGNDSPDLSLLIQNK K  LTV ISAPD+
Sbjct: 151 PGKKESLQGEECDPSNQCVDDINKLVACLRVPGNDSPDLSLLIQNKGKTALTVTISAPDF 210

Query: 202 VRLEKTKVQLRENEGNELRVSIRRKGTVNLITIKAGNGNCRLDFKDLMAHNSGEDFDNSL 261
           V+LE TK++L+E E  +++VSIR  G+ N I + AG G C LDFKDL+A  + +  DN  
Sbjct: 211 VKLESTKIELQEKEDKKVKVSIRNGGSDNSIVLTAGKGRCSLDFKDLIAQIAQKGTDNIP 270

Query: 262 KSTYFKFLSKKPTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQRLDMEVPVASLGN 321
           +ST   FL++  ++  +   AL+  AS  +C+S + +   S  SKYQ+LDME+PV+  G 
Sbjct: 271 ESTDGNFLTRTSSLAFLFLVALVAAASAWICISFKRKYFPSSGSKYQKLDMELPVSGGGK 330

Query: 322 SESDNNHGWDNSWDDNWDDEEAPKTPSLPVTPSLSSKGLASRRLSKEGWKD 372
            E+D N GWDNSW D WDDEEAPKTPS+P+TPSLS++GLA+RRLSKEGWKD
Sbjct: 331 VEADINDGWDNSWGDTWDDEEAPKTPSMPLTPSLSARGLAARRLSKEGWKD 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537773|ref|XP_002509953.1| conserved hypothetical protein [Ricinus communis] gi|223549852|gb|EEF51340.1| conserved hypothetical protein [Ricinus communis]

 Score =  243 bits (621), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 229/364 (62%), Gaps = 22/364 (6%)

Query: 20  CSAAD-KTNFSASSGLDPNLIGSRSSNDTTGGSNLVTNSSQTKNVNGNRGDQVN--KSVK 76
           CS  D K N SA +    N   ++ SND  G  +  ++S+        + +QV+  K   
Sbjct: 20  CSILDFKVNVSAKTDSQSN--STKDSNDQGGELSSFSDSNGVNKEKKRKENQVDDLKEKI 77

Query: 77  GADDKNGINKNNTFHPLGSKNADNVQKGNVVPKGKKELSDRK--DNLSDEVKSKDVSKEG 134
           G D KN  NKNN     GSK  D+++  N+        S+ K  DN   +V+  D  K+ 
Sbjct: 78  GGDMKN--NKNNLSSQSGSK-KDDMKTNNINGNDLNSQSESKKTDNSERKVEDDDSKKKT 134

Query: 135 GPDE------DSGKSRKEGTRVEECHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKV 188
            P E      DSG + K+ + VEEC  SNKC DE+ Q VACLRVPGND    SLL+QNK 
Sbjct: 135 IPKENNINQGDSGLASKD-SHVEECDPSNKCTDEENQLVACLRVPGNDQ--YSLLVQNKG 191

Query: 189 KGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIRRKGTVNLITIKAGNGNCRLDFKDL 248
           K PLTV ISAPDYV +EKT++QL+  E  ++ VSIR  G  NLI ++ GNG C LD K L
Sbjct: 192 KNPLTVTISAPDYVHIEKTEIQLQSKEDKKVPVSIRHGGNDNLIVLRTGNGRCNLDIKHL 251

Query: 249 MAHNSGEDFDNSLKSTYFKFLSKKPTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQ 308
           +  N     D S KS Y  ++S+ P + V+ FAALLILA+G  C+S R +QLSS  SKYQ
Sbjct: 252 VTENF---LDISQKSGYINYMSRTPVIAVLAFAALLILAAGWTCISFRRKQLSSSGSKYQ 308

Query: 309 RLDMEVPVASLGNSESDNNHGWDNSWDDNWDDEEAPKTPSLPVTPSLSSKGLASRRLSKE 368
           RLDME+PV++   +ES+ N GWD+ W D+WDDEEAPKTPSLPVTPSLSSKGLASRRLSKE
Sbjct: 309 RLDMELPVSTGEKAESEQNDGWDDKWGDDWDDEEAPKTPSLPVTPSLSSKGLASRRLSKE 368

Query: 369 GWKD 372
           GWKD
Sbjct: 369 GWKD 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840019|ref|XP_002887891.1| hypothetical protein ARALYDRAFT_474911 [Arabidopsis lyrata subsp. lyrata] gi|297333732|gb|EFH64150.1| hypothetical protein ARALYDRAFT_474911 [Arabidopsis lyrata subsp. lyrata]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/301 (42%), Positives = 177/301 (58%), Gaps = 23/301 (7%)

Query: 94  GSKNADNVQKGNVVPKGKKELSDRKDNLSDEVK------SKDVSKEGGPDEDS---GKSR 144
           GS+N  +  K   +   K   +D    L D  K      SK    E   +ED+      +
Sbjct: 43  GSENVTDSSKSITIDHSKNSTNDDDTQLGDGSKMIGSDSSKSGESENTKEEDAMSDSSRK 102

Query: 145 KEGTRVEECHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRL 204
           KEG   EEC  SN C D++ +F ACLRVPGND+P LSLLIQNK K PL V I+AP +VRL
Sbjct: 103 KEGFHGEECDPSNMCTDDQHEFAACLRVPGNDAPHLSLLIQNKGKRPLIVTITAPGFVRL 162

Query: 205 EKTKVQLRENEGNELRVSIRRKGTVN-LITIKAGNGNCRLDFKDL-MAHNSGEDFDNSLK 262
           EK KVQL +NE  +++VSI++ G+ +  I + +  G C L+ KDL  AH +  D   S+ 
Sbjct: 163 EKDKVQLLQNEDTKVKVSIKKGGSNDSAIVLASSKGRCSLELKDLAAAHETESDDTVSVS 222

Query: 263 STYFKFLSKKPTVPVITFAALLILASGCLCVSLRC-RQLSSGKSKYQRLDMEVPVASLG- 320
                ++S + T+ VI   + L+L+   + V +   +  S G +KYQRLDME+PV++   
Sbjct: 223 RPSILYISSR-TLIVIIMISFLVLSLVIIPVIIHVYKNKSRGNNKYQRLDMELPVSNPAL 281

Query: 321 ---NSESDNNHGWDNSWDDNWD------DEEAPKTPSLPVTPSLSSKGLASRRLSKEGWK 371
              + +   + GW+N+W D+WD      DEE P TP LP+TPSLSS+GLA RRLSKEGWK
Sbjct: 282 VTKSDQESGDDGWNNNWGDDWDDENGGGDEEQPNTPVLPLTPSLSSRGLAPRRLSKEGWK 341

Query: 372 D 372
           D
Sbjct: 342 D 342

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330420|ref|NP_683468.1| uncharacterized protein [Arabidopsis thaliana] gi|27311781|gb|AAO00856.1| Unknown protein [Arabidopsis thaliana] gi|30984576|gb|AAP42751.1| At1g64385 [Arabidopsis thaliana] gi|110742365|dbj|BAE99105.1| hypothetical protein [Arabidopsis thaliana] gi|332196114|gb|AEE34235.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/242 (46%), Positives = 157/242 (64%), Gaps = 13/242 (5%)

Query: 144 RKEGTRVEECHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVR 203
           +K+G   EEC  SN C+D++ +F ACLRVPGND+P LSLLIQNK K  L V I+AP +VR
Sbjct: 110 KKQGFHGEECDPSNMCIDDEHEFSACLRVPGNDAPHLSLLIQNKGKRALIVTITAPVFVR 169

Query: 204 LEKTKVQLRENEGNELRVSIRRKGTVN-LITIKAGNGNCRLDFKDLMAHNSGEDFDNSLK 262
           LEK KVQL +NE  +++VSI++ G+ +  I + +  G CRL+ KDL A     + D+++ 
Sbjct: 170 LEKDKVQLLQNEDIKVKVSIKKGGSNDSAIVLASSKGRCRLELKDLAAAAHETESDDTVS 229

Query: 263 STYFKFLS-KKPTVPVITFAALLILASGCLCVSLRC-RQLSSGKSKYQRLDMEVPVASLG 320
            +    L+    T+ VI   + L+L+   + V +   +  S G +KYQRLDME+PV++  
Sbjct: 230 VSRPSILNISSRTLIVIIMISFLVLSLVIIPVIIHVYKNKSRGNNKYQRLDMELPVSNPA 289

Query: 321 ----NSESDNNHGWDNSWDDNWD------DEEAPKTPSLPVTPSLSSKGLASRRLSKEGW 370
               + +   + GW+N+W D+WD      DEE P TP LP+TPSLSS+GLA RRLSKEGW
Sbjct: 290 LVTKSDQESGDDGWNNNWGDDWDDENGGGDEEQPNTPVLPLTPSLSSRGLAPRRLSKEGW 349

Query: 371 KD 372
           KD
Sbjct: 350 KD 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526531|ref|XP_004170267.1| PREDICTED: uncharacterized LOC101224558, partial [Cucumis sativus]

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 113/154 (73%), Gaps = 1/154 (0%)

Query: 219 LRVSIRRKGTVNLITIKAGNGNCRLDFKDLMAHNSGEDFDNSLKSTYFKFLSKKPTVPVI 278
           ++VSI   G  N I + +G G C LDF+DL+AH++ +D DN  KS++F +L+K   + ++
Sbjct: 1   VKVSIGDGGDGNTIVLTSGGGRCSLDFRDLVAHHNAKDSDNVPKSSWFSYLTKPHVIAIL 60

Query: 279 TFAALLILASGCLCVSLRCRQLSSGKSKYQRLDMEVPVASLGNSESDNNHGWDNSWDDNW 338
            F  +L +A+  + +S+R +   S  SKYQRLDME+PV+  G + +DNN GW+NSWDDNW
Sbjct: 61  AFGVILTIAAVSVIISIRRKNFVSSNSKYQRLDMELPVSLGGKAVADNNDGWENSWDDNW 120

Query: 339 DDEEAPKTPSLPVTPSLSSKGLASRRLSKEGWKD 372
           DD E P TPSLPVTPSLSSKGLASRRL+K+GWKD
Sbjct: 121 DD-ETPHTPSLPVTPSLSSKGLASRRLNKDGWKD 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125553403|gb|EAY99112.1| hypothetical protein OsI_21071 [Oryza sativa Indica Group] gi|222632634|gb|EEE64766.1| hypothetical protein OsJ_19622 [Oryza sativa Japonica Group]

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 127/225 (56%), Gaps = 16/225 (7%)

Query: 150 VEECHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKV 209
           ++ C  S+ C+ E  +F+ACL+VPG DS  LSLL+ NK   PL V I+ P++V   +  +
Sbjct: 113 IKGCDPSHTCVIENKKFIACLKVPGEDSLALSLLMDNKGMDPLYVGITTPEFVTSAEDTI 172

Query: 210 QLRENEGNELRVSIRRKGTVNL-ITIKAGNGNCRLDFKDLMAHNSGEDFDNSLKSTYFKF 268
            ++ N+ NE +V+I   G  N+ I ++     C +     +A    +     L S Y   
Sbjct: 173 HVQANDHNETQVTIFNNGAPNMTIILRVAEETCNISIHRAIAREISQVMPMRLTSKYM-- 230

Query: 269 LSKKPTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQRLD-MEVPVASLGNSESDNN 327
                 VPV      L++ +   C+ LR R +  G   YQ+LD  E+P+++ G  E+D +
Sbjct: 231 -----LVPV-----FLLIGAVVACIKLRRRGIQDGGPAYQKLDAAELPLSTGGKKEADQS 280

Query: 328 HGWDNSWDDNWDDEEAPKTPSLPVTPSLSSKGLASRRLSKEGWKD 372
             WD++W D WDD EAP TP+  + P+LSSKGLASRR +K+GWKD
Sbjct: 281 DQWDDNWGDEWDD-EAPLTPTRHM-PNLSSKGLASRRSTKDGWKD 323

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326514760|dbj|BAJ99741.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/226 (42%), Positives = 131/226 (57%), Gaps = 17/226 (7%)

Query: 150 VEECHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKV 209
           + EC  S++C+ EK +F+ACL+V G DS  LSLL+ NK   PL V I+APDYV L +  V
Sbjct: 119 IGECDPSHRCLIEKQKFIACLKVSG-DSSALSLLMDNKGTNPLDVSITAPDYVILAEDTV 177

Query: 210 QLRENEGNELRVSIRRKGTVN--LITIKAGNGNCRLDFKDLMAHNSGEDFDNSLKSTYFK 267
            +  N  NE +VS+    TVN   I +K     C+++ +  +  N+G      L  TY  
Sbjct: 178 HVEANGHNETQVSVSVSDTVNDMAIVLKVAEETCKINLETAVTRNTGRVIPMRLTPTYM- 236

Query: 268 FLSKKPTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQRLDM-EVPVASLGNSESDN 326
                  VPV      ++L    LCV LR  +   G   YQ+LD  E+PV+  G  E+D 
Sbjct: 237 ------LVPV-----FVLLGLAGLCVKLRRARKQDGGPSYQKLDAPELPVSIGGKKETDQ 285

Query: 327 NHGWDNSWDDNWDDEEAPKTPSLPVTPSLSSKGLASRRLSKEGWKD 372
              WD++W D+WDDEEAP TPS  + P+LSSKGLASRR +K+GWKD
Sbjct: 286 PDQWDDNWGDDWDDEEAPSTPSNSM-PNLSSKGLASRRSTKDGWKD 330

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
TAIR|locus:504956308	351	AT1G64385 "AT1G64385" [Arabido	0.827	0.877	0.360	6.3e-37

TAIR|locus:504956308 AT1G64385 "AT1G64385" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 121/336 (36%), Positives = 169/336 (50%)

Query:    53 LVTNSSQTKNVNGNRGDQVNKSVKGADDKNGINKNNTFHPLGSKNADNVQKGNVVPKGKK 112
             +V+NS+ T    G   + V  S      K+ I  +   H   S N D+ Q G+    G K
Sbjct:    28 VVSNSNLTDTRFGGGSENVTDS----SSKSIITID---HSKNSTNDDDTQLGD----GSK 76

Query:   113 EL-SDRKDNLSDEVKSKDVSKEGGPDEDSGKSRK-EGTRVEECHSSNKCMDEKMQFVACL 170
              + SD   +   ++ S +  KE         SRK +G   EEC  SN C+D++ +F ACL
Sbjct:    77 MIGSDSSKSDQGKIASDESDKEEEEAVSKNSSRKKQGFHGEECDPSNMCIDDEHEFSACL 136

Query:   171 RVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIRRKGTVN 230
             RVPGND+P LSLLIQNK K  L V I+AP +VRLEK KVQL +NE  +++VSI++ G+ +
Sbjct:   137 RVPGNDAPHLSLLIQNKGKRALIVTITAPVFVRLEKDKVQLLQNEDIKVKVSIKKGGSND 196

Query:   231 -LITIKAGNGNCRLDFKDLMA--HNSGEDFDNSLKSTYFKFLSKKPTVPVITFAALLILA 287
               I + +  G CRL+ KDL A  H +  D   S+       +S + T+ VI   + L+L+
Sbjct:   197 SAIVLASSKGRCRLELKDLAAAAHETESDDTVSVSRPSILNISSR-TLIVIIMISFLVLS 255

Query:   288 SGCLCVSLRC-RQLSSGKSKYQRLDMEVPVAS-----LGNSESXXXXXXXX-----XXXX 336
                + V +   +  S G +KYQRLDME+PV++       + ES                 
Sbjct:   256 LVIIPVIIHVYKNKSRGNNKYQRLDMELPVSNPALVTKSDQESGDDGWNNNWGDDWDDEN 315

Query:   337 XXXXEEAXXXXXXXXXXXXXXXGLASRRLSKEGWKD 372
                 EE                GLA RRLSKEGWKD
Sbjct:   316 GGGDEEQPNTPVLPLTPSLSSRGLAPRRLSKEGWKD 351


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.128   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      372       330   0.00089  116 3  11 23  0.37    35
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  200 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.73u 0.10s 34.83t   Elapsed:  00:00:02
  Total cpu time:  34.73u 0.10s 34.83t   Elapsed:  00:00:02
  Start:  Sat May 11 09:32:12 2013   End:  Sat May 11 09:32:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	87.95
PHA03283	542	envelope glycoprotein E; Provisional	83.7
COG1470	513	Predicted membrane protein [Function unknown]	81.24

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=87.95  E-value=0.15  Score=50.32  Aligned_cols=21  Identities=29%  Similarity=0.532  Sum_probs=0.0

Q ss_pred             HHHHHHHhhceeEEeeceecc
Q 017393          280 FAALLILASGCLCVSLRCRQL  300 (372)
Q Consensus       280 ~~tlli~gg~waCckfRrrr~  300 (372)
                      ++++||++++.|||.+||||.
T Consensus       155 I~~iLLIA~iIa~icyrrkR~  175 (290)
T PF05454_consen  155 IAAILLIAGIIACICYRRKRK  175 (290)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHHHhhhhhhc
Confidence            444566778888888887765

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PHA03283 envelope glycoprotein E; Provisional

Probab=83.70  E-value=2.6  Score=45.17  Aligned_cols=64  Identities=25%  Similarity=0.311  Sum_probs=34.6

Q ss_pred             HHHHhhceeEEeeceeccCCCCCCceeeec------cCCcccCCCCcCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q 017393          283 LLILASGCLCVSLRCRQLSSGKSKYQRLDM------EVPVASLGNSESD-NNHGWDNSWDDNWDDEEAPKTPSLP  350 (372)
Q Consensus       283 lli~gg~waCckfRrrr~~~~gv~YQeLEM------~lP~S~g~~~e~e-t~dGWD~~WDDDWDDEEA~ksPs~~  350 (372)
                      +|+..++|+|+.+|++++.    +|.=|-=      .||.-..-..-.| -+..=||..|+|=|||-++..|..+
T Consensus       413 ~~~~l~vw~c~~~r~~~~~----~y~ilnpf~~vytslptn~~~~~~f~~~~~~~ddsf~~~~de~~~~~~~~~~  483 (542)
T PHA03283        413 LLVALVVWGCILYRRSNRK----PYEVLNPFETVYTSVPSNDPEVLVFERLASDSDDSFDSSSDEELEPPPPPGP  483 (542)
T ss_pred             HHHHHhhhheeeehhhcCC----cccccCCCccceeccCCCCCcccceeecccCccccccccccccccCCCCCCC
Confidence            3555789999998877653    5655543      1443322111111 1223355777776666665555543

>COG1470 Predicted membrane protein [Function unknown]

Probab=81.24  E-value=4  Score=43.54  Aligned_cols=63  Identities=19%  Similarity=0.414  Sum_probs=40.9

Q ss_pred             CCCeEEEEEcCCCCceE---EEEeCCccccc--cceeeee-cccCCceeEEEEEEcCCccEEEEEcCCCceEEecC
Q 017393          177 SPDLSLLIQNKVKGPLT---VRISAPDYVRL--EKTKVQL-RENEGNELRVSIRRKGTVNLITIKAGNGNCRLDFK  246 (372)
Q Consensus       177 S~~lsLLVQNkG~~~L~---V~I~aPd~v~l--~~tki~L-~k~e~kkvkVSI~~~~s~~~IvL~aGkG~C~L~i~  246 (372)
                      ....-+-|-|.|.-+|+   ++|..|..+.+  ++.+|+. ..+++++|++.|+...+       |+.|+-++.+.
T Consensus       398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~-------a~aGdY~i~i~  466 (513)
T COG1470         398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPED-------AGAGDYRITIT  466 (513)
T ss_pred             cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCC-------CCCCcEEEEEE
Confidence            35678899999987765   78889987554  4444543 36677887777774322       34555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
3lge_E	31	Sorting nexin-9; complex, glycolysis, actin dynami	86.54

>3lge_E Sorting nexin-9; complex, glycolysis, actin dynamics, LC4, hydrophobic pocket acetylation, lyase, phosphoprotein, schiff base; 2.20A {Oryctolagus cuniculus}

Probab=86.54  E-value=0.19  Score=34.13  Aligned_cols=12  Identities=50%  Similarity=1.420  Sum_probs=9.9

Q ss_pred             CCCCCCCCCCCC
Q 017393          328 HGWDNSWDDNWD  339 (372)
Q Consensus       328 dGWD~~WDDDWD  339 (372)
                      -|=|+.||||||
T Consensus         8 ~G~DDDWDdeWD   19 (31)
T 3lge_E            8 TGDDDDWDEDWD   19 (31)
T ss_pred             CCCccccccccc
Confidence            466888999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00