BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017394
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 33 GEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLP 85
G +P + LE L L+ N L ASI L+ LR + + C L LP
Sbjct: 115 GLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP 167
>pdb|2QUF|A Chain A, Crystal Structure Of Transcription Factor Axxa-pf0095 From
Pyrococcus Furiosus
pdb|2QUF|B Chain B, Crystal Structure Of Transcription Factor Axxa-pf0095 From
Pyrococcus Furiosus
Length = 232
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 65 YRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQI 116
YR S +R IK K + ++ +L A + + L+G ++E LSD LNL E ++
Sbjct: 145 YRSSLMRKIKEAYLKEIGDMTQL-AILHYLLLNGRATVEELSDRLNLKEREV 195
>pdb|3Q7R|A Chain A, 1.6a Resolution Structure Of The Chxr Receiver Domain From
Chlamydia Trachomatis
pdb|3Q7R|B Chain B, 1.6a Resolution Structure Of The Chxr Receiver Domain From
Chlamydia Trachomatis
pdb|3Q7S|A Chain A, 2.1a Resolution Structure Of The Chxr Receiver Domain
Containing I3c From Chlamydia Trachomatis
pdb|3Q7S|B Chain B, 2.1a Resolution Structure Of The Chxr Receiver Domain
Containing I3c From Chlamydia Trachomatis
pdb|3Q7T|A Chain A, 2.15a Resolution Structure (I41 Form) Of The Chxr Receiver
Domain From Chlamydia Trachomatis
pdb|3Q7T|B Chain B, 2.15a Resolution Structure (I41 Form) Of The Chxr Receiver
Domain From Chlamydia Trachomatis
Length = 121
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 203 PKYSLPYPEH-DLCVWSTDGYGPYGYRISFGKQFGQAVSDHLFLC 246
PK+ L EH DL + + P YR + G+Q+ Q +S L +C
Sbjct: 12 PKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQELSADLVVC 56
>pdb|4DW7|A Chain A, Crystal Structure Of An Active-Site Mutant Of The
Glycoprotein Erns From The Pestivirus Bvdv-1 In Complex
With A Cpu Dinucleotide
pdb|4DW7|B Chain B, Crystal Structure Of An Active-Site Mutant Of The
Glycoprotein Erns From The Pestivirus Bvdv-1 In Complex
With A Cpu Dinucleotide
pdb|4DWA|A Chain A, Crystal Structure Of An Active-Site Mutant Of The
Glycoprotein Erns From The Pestivirus Bvdv-1 In Complex
With A Cpupc Trinucleotide
pdb|4DWA|B Chain B, Crystal Structure Of An Active-Site Mutant Of The
Glycoprotein Erns From The Pestivirus Bvdv-1 In Complex
With A Cpupc Trinucleotide
Length = 167
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 290 WNLNEFGHDCLGSTSFTRSLNDDLDRAEASGSCRGDDAGSTTSSERSFLKRSLEGYVGAA 349
WNL + G + + F R +N L C G + T +E +++ G + A+
Sbjct: 8 WNLQDNGTEGIQRAMFQRGVNRSLKGIWPEKICTGVPSHLATDTEL----KAIHGMMDAS 63
Query: 350 EASGSGCC 357
E + CC
Sbjct: 64 EKTNYTCC 71
>pdb|4DVK|A Chain A, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 Strain Ncp-7
pdb|4DVK|B Chain B, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 Strain Ncp-7
Length = 165
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 290 WNLNEFGHDCLGSTSFTRSLNDDLDRAEASGSCRGDDAGSTTSSERSFLKRSLEGYVGAA 349
WNL + G + + F R +N L C G + T +E +++ G + A+
Sbjct: 6 WNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDTEL----KAIHGMMDAS 61
Query: 350 EASGSGCC 357
E + CC
Sbjct: 62 EKTNYTCC 69
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 301 GSTSFTRSLNDDLDRAEASGSCRGDDAGSTTSSERSFLKRSLEGYVGAAEASGSGCC 357
G T S + +DR + + R + A S T ER+ L R L+ + SG
Sbjct: 362 GQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVT 418
>pdb|4DVL|A Chain A, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 In Complex With 2'-3'-Cyclo-Ump
pdb|4DVL|B Chain B, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 In Complex With 2'-3'-Cyclo-Ump
pdb|4DVN|A Chain A, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 In Complex With 2'-Ump
pdb|4DVN|B Chain B, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 In Complex With 2'-Ump
pdb|4DW3|A Chain A, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 In Complex With 5'-Cmp
pdb|4DW3|B Chain B, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 In Complex With 5'-Cmp
pdb|4DW4|A Chain A, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 In Complex With 5'-Ump
pdb|4DW4|B Chain B, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 In Complex With 5'-Ump
pdb|4DW5|A Chain A, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 In Complex With A Non-Cleavable Cpu
Dinucleotide
pdb|4DW5|B Chain B, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 In Complex With A Non-Cleavable Cpu
Dinucleotide
pdb|4DWC|A Chain A, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 In Complex With Zn Ions
pdb|4DWC|B Chain B, Crystal Structure Of The Glycoprotein Erns From The
Pestivirus Bvdv-1 In Complex With Zn Ions
Length = 167
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 290 WNLNEFGHDCLGSTSFTRSLNDDLDRAEASGSCRGDDAGSTTSSERSFLKRSLEGYVGAA 349
WNL + G + + F R +N L C G + T +E +++ G + A+
Sbjct: 8 WNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDTEL----KAIHGMMDAS 63
Query: 350 EASGSGCC 357
E + CC
Sbjct: 64 EKTNYTCC 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,402,730
Number of Sequences: 62578
Number of extensions: 493248
Number of successful extensions: 1025
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 24
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)