Query 017394
Match_columns 372
No_of_seqs 341 out of 2733
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:11:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 1.3E-23 2.7E-28 234.9 23.9 190 1-206 783-1007(1153)
2 PLN00113 leucine-rich repeat r 99.4 1E-12 2.3E-17 145.1 8.1 83 2-85 146-229 (968)
3 PLN00113 leucine-rich repeat r 99.3 2E-12 4.4E-17 142.8 7.3 85 1-86 169-254 (968)
4 KOG0617 Ras suppressor protein 99.2 7.6E-12 1.6E-16 109.4 1.2 144 1-156 38-187 (264)
5 PLN03150 hypothetical protein; 99.0 2.8E-10 6E-15 120.3 7.4 85 1-86 423-508 (623)
6 KOG0617 Ras suppressor protein 98.8 1.7E-10 3.6E-15 101.1 -3.0 105 1-117 61-190 (264)
7 KOG0444 Cytoskeletal regulator 98.8 5.9E-10 1.3E-14 113.5 0.0 142 1-154 227-374 (1255)
8 KOG0444 Cytoskeletal regulator 98.8 1.2E-09 2.6E-14 111.3 1.5 66 12-79 95-161 (1255)
9 PRK15387 E3 ubiquitin-protein 98.7 2.9E-08 6.3E-13 106.4 7.8 102 1-114 206-316 (788)
10 PLN03150 hypothetical protein; 98.7 3.3E-08 7.2E-13 104.6 6.8 85 1-86 447-533 (623)
11 PRK15370 E3 ubiquitin-protein 98.6 3.5E-08 7.6E-13 105.9 6.1 89 1-99 204-293 (754)
12 PLN03210 Resistant to P. syrin 98.6 1.3E-07 2.8E-12 106.7 10.4 97 1-100 616-715 (1153)
13 KOG0532 Leucine-rich repeat (L 98.6 3.1E-09 6.7E-14 107.4 -2.8 178 3-201 105-294 (722)
14 PF14580 LRR_9: Leucine-rich r 98.6 3.5E-08 7.7E-13 87.8 4.2 102 1-114 24-127 (175)
15 KOG0472 Leucine-rich repeat pr 98.5 3E-08 6.5E-13 96.9 2.2 98 5-113 420-541 (565)
16 PF13855 LRR_8: Leucine rich r 98.5 6.4E-08 1.4E-12 70.7 3.4 59 20-80 1-61 (61)
17 KOG4194 Membrane glycoprotein 98.5 1.4E-08 3.1E-13 103.0 -0.2 166 1-172 298-488 (873)
18 KOG0472 Leucine-rich repeat pr 98.5 4.4E-09 9.6E-14 102.5 -4.9 96 4-112 145-240 (565)
19 PRK15370 E3 ubiquitin-protein 98.5 7.6E-08 1.7E-12 103.3 3.7 88 1-98 225-313 (754)
20 PRK15387 E3 ubiquitin-protein 98.5 1.8E-07 3.9E-12 100.4 6.4 87 1-97 287-390 (788)
21 KOG4194 Membrane glycoprotein 98.4 1.9E-07 4.1E-12 95.0 4.2 79 1-80 154-233 (873)
22 KOG0618 Serine/threonine phosp 98.4 5.1E-08 1.1E-12 103.4 -1.3 84 1-87 364-448 (1081)
23 PF13855 LRR_8: Leucine rich r 98.3 4.2E-07 9.2E-12 66.3 2.1 56 1-57 6-61 (61)
24 PF14580 LRR_9: Leucine-rich r 98.2 5.3E-07 1.1E-11 80.3 2.3 98 1-107 47-147 (175)
25 KOG0618 Serine/threonine phosp 98.1 4.1E-07 8.8E-12 96.7 -1.6 98 1-101 388-488 (1081)
26 PF12799 LRR_4: Leucine Rich r 98.1 3.5E-06 7.6E-11 57.6 3.4 39 21-61 2-40 (44)
27 PF12799 LRR_4: Leucine Rich r 98.0 6E-06 1.3E-10 56.5 3.3 37 45-81 1-37 (44)
28 KOG1259 Nischarin, modulator o 97.9 2.6E-06 5.7E-11 80.8 1.0 57 1-61 289-345 (490)
29 KOG4658 Apoptotic ATPase [Sign 97.9 2.8E-06 6.1E-11 92.9 1.3 88 14-110 565-652 (889)
30 KOG0532 Leucine-rich repeat (L 97.9 1.3E-06 2.8E-11 88.8 -1.7 110 1-114 126-248 (722)
31 KOG4237 Extracellular matrix p 97.9 7.1E-07 1.5E-11 87.2 -4.2 111 1-112 72-200 (498)
32 cd00116 LRR_RI Leucine-rich re 97.7 5.4E-06 1.2E-10 79.5 -0.8 69 12-81 73-150 (319)
33 COG4886 Leucine-rich repeat (L 97.7 1.8E-05 4E-10 78.8 1.9 82 1-86 121-203 (394)
34 cd00116 LRR_RI Leucine-rich re 97.6 9.8E-06 2.1E-10 77.7 -0.4 81 1-81 86-178 (319)
35 COG4886 Leucine-rich repeat (L 97.6 3.4E-05 7.3E-10 76.9 2.3 81 2-86 99-180 (394)
36 PRK15386 type III secretion pr 97.5 0.00017 3.6E-09 72.3 6.6 54 1-62 57-112 (426)
37 KOG4658 Apoptotic ATPase [Sign 97.5 4.2E-05 9E-10 83.8 1.3 77 1-79 576-653 (889)
38 KOG1259 Nischarin, modulator o 97.4 3.2E-05 6.9E-10 73.6 0.0 68 10-80 274-341 (490)
39 KOG4579 Leucine-rich repeat (L 97.3 2E-05 4.4E-10 67.1 -2.4 77 2-81 33-113 (177)
40 KOG1859 Leucine-rich repeat pr 97.2 3.9E-05 8.4E-10 80.3 -2.8 74 1-80 192-266 (1096)
41 KOG4237 Extracellular matrix p 97.1 0.00021 4.6E-09 70.2 1.5 89 15-112 269-358 (498)
42 KOG3207 Beta-tubulin folding c 96.9 0.0005 1.1E-08 68.4 2.1 78 1-80 227-313 (505)
43 KOG0531 Protein phosphatase 1, 96.9 0.00052 1.1E-08 69.2 2.3 74 3-80 79-152 (414)
44 PRK15386 type III secretion pr 96.8 0.002 4.3E-08 64.7 5.6 72 16-97 48-120 (426)
45 KOG1859 Leucine-rich repeat pr 96.6 0.00014 3.1E-09 76.2 -4.2 87 14-114 181-268 (1096)
46 KOG0531 Protein phosphatase 1, 96.6 0.00069 1.5E-08 68.3 0.7 101 1-114 100-200 (414)
47 KOG4579 Leucine-rich repeat (L 96.5 0.0003 6.5E-09 60.1 -1.8 56 22-79 29-88 (177)
48 PF00560 LRR_1: Leucine Rich R 96.2 0.0017 3.6E-08 37.4 0.7 21 46-66 1-21 (22)
49 KOG1644 U2-associated snRNP A' 96.0 0.0071 1.5E-07 54.8 4.0 84 20-113 42-126 (233)
50 KOG2739 Leucine-rich acidic nu 96.0 0.0046 1E-07 57.8 2.7 66 12-80 35-103 (260)
51 KOG2739 Leucine-rich acidic nu 95.7 0.01 2.2E-07 55.6 3.6 13 66-78 63-75 (260)
52 KOG3665 ZYG-1-like serine/thre 95.6 0.0046 1E-07 66.4 1.1 86 18-111 146-231 (699)
53 KOG1644 U2-associated snRNP A' 95.5 0.02 4.3E-07 52.0 4.6 75 1-79 47-124 (233)
54 KOG2982 Uncharacterized conser 94.7 0.012 2.7E-07 56.3 1.0 78 1-79 76-157 (418)
55 KOG3207 Beta-tubulin folding c 94.7 0.024 5.1E-07 56.8 3.0 81 1-81 251-339 (505)
56 PF13504 LRR_7: Leucine rich r 94.6 0.021 4.5E-07 30.8 1.4 16 46-61 2-17 (17)
57 KOG2982 Uncharacterized conser 94.4 0.015 3.3E-07 55.6 0.9 100 13-112 38-158 (418)
58 KOG2123 Uncharacterized conser 94.1 0.004 8.7E-08 59.0 -3.5 102 18-130 17-123 (388)
59 PF00560 LRR_1: Leucine Rich R 94.0 0.017 3.8E-07 33.1 0.2 22 21-44 1-22 (22)
60 KOG0473 Leucine-rich repeat pr 93.1 0.0021 4.5E-08 59.5 -7.2 62 16-79 38-99 (326)
61 smart00369 LRR_TYP Leucine-ric 92.8 0.099 2.1E-06 31.0 2.2 21 44-64 1-21 (26)
62 smart00370 LRR Leucine-rich re 92.8 0.099 2.1E-06 31.0 2.2 21 44-64 1-21 (26)
63 KOG1909 Ran GTPase-activating 91.9 0.068 1.5E-06 52.2 1.1 65 44-114 156-227 (382)
64 KOG2120 SCF ubiquitin ligase, 91.8 0.0084 1.8E-07 57.4 -5.1 83 16-99 206-296 (419)
65 KOG2123 Uncharacterized conser 91.1 0.018 4E-07 54.7 -3.5 66 16-84 37-104 (388)
66 KOG3665 ZYG-1-like serine/thre 90.8 0.14 2.9E-06 55.3 2.1 61 17-80 170-232 (699)
67 KOG1909 Ran GTPase-activating 90.4 0.047 1E-06 53.2 -1.5 107 2-112 191-310 (382)
68 PF13306 LRR_5: Leucine rich r 85.9 1.9 4E-05 35.2 5.5 59 15-77 7-67 (129)
69 COG5238 RNA1 Ran GTPase-activa 85.3 0.76 1.6E-05 43.9 3.1 108 2-114 98-228 (388)
70 smart00364 LRR_BAC Leucine-ric 84.5 0.59 1.3E-05 28.1 1.3 17 46-62 3-19 (26)
71 KOG2120 SCF ubiquitin ligase, 84.5 0.052 1.1E-06 52.2 -5.1 84 21-110 186-270 (419)
72 COG5238 RNA1 Ran GTPase-activa 81.2 0.44 9.6E-06 45.4 -0.2 112 1-113 35-170 (388)
73 KOG0473 Leucine-rich repeat pr 81.1 0.046 9.9E-07 50.8 -6.6 78 1-81 47-124 (326)
74 smart00369 LRR_TYP Leucine-ric 78.6 1.5 3.4E-05 25.7 1.7 21 19-41 1-21 (26)
75 smart00370 LRR Leucine-rich re 78.6 1.5 3.4E-05 25.7 1.7 21 19-41 1-21 (26)
76 smart00365 LRR_SD22 Leucine-ri 76.3 2.2 4.7E-05 25.6 1.8 16 45-60 2-17 (26)
77 PF13306 LRR_5: Leucine rich r 72.6 7.8 0.00017 31.4 5.0 60 14-77 29-90 (129)
78 KOG1947 Leucine rich repeat pr 69.5 1.5 3.3E-05 44.0 0.1 62 17-79 211-280 (482)
79 PF13516 LRR_6: Leucine Rich r 66.9 2.3 4.9E-05 24.5 0.4 14 45-58 2-15 (24)
80 KOG3864 Uncharacterized conser 59.1 1.1 2.4E-05 40.8 -2.8 58 21-80 102-163 (221)
81 KOG1947 Leucine rich repeat pr 58.2 2 4.4E-05 43.1 -1.5 66 16-81 239-308 (482)
82 smart00368 LRR_RI Leucine rich 56.3 9.2 0.0002 23.0 1.8 14 45-58 2-15 (28)
83 PF10587 EF-1_beta_acid: Eukar 55.6 2.8 6.1E-05 25.5 -0.6 16 355-370 2-18 (28)
84 KOG3763 mRNA export factor TAP 45.0 8.5 0.00018 40.1 0.5 20 185-204 440-459 (585)
85 smart00367 LRR_CC Leucine-rich 34.3 28 0.0006 20.3 1.4 12 68-79 2-13 (26)
86 PF03522 KCl_Cotrans_1: K-Cl C 29.3 27 0.00058 21.6 0.7 19 351-369 9-27 (30)
87 KOG3864 Uncharacterized conser 29.2 24 0.00053 32.3 0.8 61 45-105 101-167 (221)
88 TIGR00864 PCC polycystin catio 23.6 52 0.0011 40.9 2.4 31 26-58 1-32 (2740)
89 TIGR00864 PCC polycystin catio 22.8 56 0.0012 40.6 2.4 32 2-33 1-32 (2740)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.3e-23 Score=234.89 Aligned_cols=190 Identities=21% Similarity=0.353 Sum_probs=145.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCC---------------------CCCCEEeccCCCCcc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDL---------------------CSLEELHLSGNNFVT 59 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L---------------------~~L~~L~Ls~N~l~~ 59 (372)
|+|++|...+.+|.++++|++|+.|+|++|... +.+|..+ ++ ++|+.|+|++|.++.
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L-~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINL-ETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE 860 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCc-CeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCcc
Confidence 567888888889999999999999999998654 5677643 22 356677777778888
Q ss_pred cchhhhcCCCCcEEEccccccccCCCCCCc---ccccccccCCcccccccCcCccCCC---------CC-Cccccccccc
Q 017394 60 LLASIYRLSSLRGIKLEECKMLQNLPRLPA---RIQGISLDGCVSLETLSDVLNLNEH---------QI-PNIHVHCVDC 126 (372)
Q Consensus 60 lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~---~l~~L~~~~c~sL~~l~~~~n~l~~---------~~-~~l~~~~~nc 126 (372)
+|.++..+++|+.|+|++|+.+..+|..+. .|+.|++.+|.+|+.+++..+.... .. ......|.||
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC 940 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINC 940 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccc
Confidence 999999999999999999998888887554 4556799999999987764422110 11 1123478999
Q ss_pred ccccccchHHHHHHHHHhhcCCCCCCCceeecCCCCCCcccccccCCCCeEE-EecCCCCccCCCceeeeEEEEEecCCC
Q 017394 127 LKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSIT-ISTPPKTYKNSKLVGYAACCVFRIPKY 205 (372)
Q Consensus 127 ~kL~~~~~~~l~~l~~~l~~~~~~~~~~~~~lPg~~IP~wf~~~~~~g~slt-~~Lp~~~~~~~~~~gfa~C~v~~~~~~ 205 (372)
.+|.+ .+. ++.. .....+++||.++|+||.|++. |++++ +.+|+.|. ..++.||++|+|+++...
T Consensus 941 ~~L~~--~a~-------l~~~---~~~~~~~l~g~evp~~f~hr~~-g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~ 1006 (1153)
T PLN03210 941 FNLDQ--EAL-------LQQQ---SIFKQLILSGEEVPSYFTHRTT-GASLTNIPLLHISP-CQPFFRFRACAVVDSESF 1006 (1153)
T ss_pred cCCCc--hhh-------hccc---ccceEEECCCccCchhccCCcc-cceeeeeccCCccc-CCCccceEEEEEEecCcc
Confidence 99873 221 2211 1234578999999999999999 99998 99999998 788999999999998764
Q ss_pred C
Q 017394 206 S 206 (372)
Q Consensus 206 ~ 206 (372)
.
T Consensus 1007 ~ 1007 (1153)
T PLN03210 1007 F 1007 (1153)
T ss_pred c
Confidence 3
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.36 E-value=1e-12 Score=145.07 Aligned_cols=83 Identities=28% Similarity=0.374 Sum_probs=48.6
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
+|++|.+.+.+|..++++++|+.|+|++|.+. +.+|..++++++|++|+|++|++. .+|..++.+++|+.|+|++|.+
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCccc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 45555555555555666666666666666555 555655666666666666666555 5555566666666666666655
Q ss_pred ccCCC
Q 017394 81 LQNLP 85 (372)
Q Consensus 81 l~~lP 85 (372)
.+.+|
T Consensus 225 ~~~~p 229 (968)
T PLN00113 225 SGEIP 229 (968)
T ss_pred CCcCC
Confidence 54444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.32 E-value=2e-12 Score=142.77 Aligned_cols=85 Identities=26% Similarity=0.335 Sum_probs=65.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+.+|..++++++|++|+|++|++. +.+|..++.+++|+.|+|++|++. .+|..|+.+++|++|+|++|.
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCc-CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 567788887788888888888888888888876 677777788888888888888777 777777777778888887777
Q ss_pred cccCCCC
Q 017394 80 MLQNLPR 86 (372)
Q Consensus 80 ~l~~lP~ 86 (372)
+.+.+|.
T Consensus 248 l~~~~p~ 254 (968)
T PLN00113 248 LTGPIPS 254 (968)
T ss_pred eccccCh
Confidence 6665553
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.16 E-value=7.6e-12 Score=109.41 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=93.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|-||+|.++ .+|+.|..|.+|+.|++++|++ ..+|..|..|++|+.|+++-|++..+|..|+.++.|+.|||.+|++
T Consensus 38 LtLSHNKl~-~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhcccCcee-ecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccc
Confidence 457888884 4566789999999999999999 4599999999999999999999999999999999999999988875
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCCCCCccccccccccccc------ccchHHHHHHHHHhhcCCCCCCCc
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA------GNYDLALSLLKEYIKNSECSWRDF 154 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~------~~~~~~l~~l~~~l~~~~~~~~~~ 154 (372)
... .+|.+.. .++.|+.|.++.|-+....+.+ ..+.+..-|. -.+|..+..|.+ +.+++..+|++
T Consensus 115 ~e~--~lpgnff-----~m~tlralyl~dndfe~lp~dv-g~lt~lqil~lrdndll~lpkeig~lt~-lrelhiqgnrl 185 (264)
T KOG0617|consen 115 NEN--SLPGNFF-----YMTTLRALYLGDNDFEILPPDV-GKLTNLQILSLRDNDLLSLPKEIGDLTR-LRELHIQGNRL 185 (264)
T ss_pred ccc--cCCcchh-----HHHHHHHHHhcCCCcccCChhh-hhhcceeEEeeccCchhhCcHHHHHHHH-HHHHhccccee
Confidence 432 3444433 2333333333333222111100 0011100000 025666666665 66777777777
Q ss_pred ee
Q 017394 155 CI 156 (372)
Q Consensus 155 ~~ 156 (372)
++
T Consensus 186 ~v 187 (264)
T KOG0617|consen 186 TV 187 (264)
T ss_pred ee
Confidence 75
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.05 E-value=2.8e-10 Score=120.34 Aligned_cols=85 Identities=28% Similarity=0.408 Sum_probs=79.9
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.|.+|+.+..|++|+.|+|++|++. |.+|..++.+++|+.|+|++|+|. .+|..++.|++|+.|+|++|+
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 578999999999999999999999999999998 899999999999999999999999 899999999999999999999
Q ss_pred cccCCCC
Q 017394 80 MLQNLPR 86 (372)
Q Consensus 80 ~l~~lP~ 86 (372)
+.+.+|.
T Consensus 502 l~g~iP~ 508 (623)
T PLN03150 502 LSGRVPA 508 (623)
T ss_pred ccccCCh
Confidence 9887775
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.84 E-value=1.7e-10 Score=101.08 Aligned_cols=105 Identities=27% Similarity=0.360 Sum_probs=62.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccC-------------------------C
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSG-------------------------N 55 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~-------------------------N 55 (372)
|+|++|+| ..+|.+++.|++|+.|+++.|.+. .+|..||.++.|+.|||++ |
T Consensus 61 ln~~nnqi-e~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 61 LNLSNNQI-EELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred hhcccchh-hhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence 35566665 444555555555555555555552 2455555555555555554 4
Q ss_pred CCcccchhhhcCCCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394 56 NFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP 117 (372)
Q Consensus 56 ~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~ 117 (372)
.|..+|..+++|++|+.|.+..|.++ .+|..++ .++.|+.|+...|++....|
T Consensus 138 dfe~lp~dvg~lt~lqil~lrdndll----~lpkeig-----~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 138 DFEILPPDVGKLTNLQILSLRDNDLL----SLPKEIG-----DLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred CcccCChhhhhhcceeEEeeccCchh----hCcHHHH-----HHHHHHHHhcccceeeecCh
Confidence 55566666677777777777777644 3444454 66778888888887765333
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.83 E-value=5.9e-10 Score=113.55 Aligned_cols=142 Identities=21% Similarity=0.244 Sum_probs=103.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
+|||.|++ ..+|..+.++++|+.|+||+|.|++ +-..++.+.+|+.|+||.|.++.+|+.+.+|++|+.|.+.+|++
T Consensus 227 vDlS~N~L-p~vPecly~l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 227 VDLSENNL-PIVPECLYKLRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred ccccccCC-CcchHHHhhhhhhheeccCcCceee--eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc
Confidence 57888987 6778899999999999999999954 77778888899999999999999999999999999999999985
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCCCCCccc------ccccccccccccchHHHHHHHHHhhcCCCCCCCc
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIH------VHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDF 154 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~------~~~~nc~kL~~~~~~~l~~l~~~l~~~~~~~~~~ 154 (372)
. +..+|+.+. .+..|+.++..+|.+....-.++ -.-.+|+.|. .+|..|-.|.. |..+++..|.=
T Consensus 304 ~--FeGiPSGIG-----KL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~-l~vLDlreNpn 374 (1255)
T KOG0444|consen 304 T--FEGIPSGIG-----KLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPD-LKVLDLRENPN 374 (1255)
T ss_pred c--ccCCccchh-----hhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCC-cceeeccCCcC
Confidence 3 456777777 66778888888887754221110 0112333333 35666544433 55666665543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.81 E-value=1.2e-09 Score=111.27 Aligned_cols=66 Identities=27% Similarity=0.294 Sum_probs=32.2
Q ss_pred CCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 12 LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 12 lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
+|+.|..|..|+.||||.|++. +.|..+..-+++-.|+||+|++.+||.. +.+|.-|-+|+|++|+
T Consensus 95 iP~diF~l~dLt~lDLShNqL~--EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLR--EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred CCchhcccccceeeecchhhhh--hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 4444555555555555555553 2555555445555555555555555432 3344444444444444
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.70 E-value=2.9e-08 Score=106.44 Aligned_cols=102 Identities=24% Similarity=0.284 Sum_probs=78.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|+.|++. .+|+.+. ++|+.|+|++|+|. .+|.. +++|++|+|++|+|+.+|.. .++|+.|+|++|.
T Consensus 206 LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt--~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~- 273 (788)
T PRK15387 206 LNVGESGLT-TLPDCLP--AHITTLVIPDNNLT--SLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP- 273 (788)
T ss_pred EEcCCCCCC-cCCcchh--cCCCEEEccCCcCC--CCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc-
Confidence 578899886 6888775 47999999999995 48863 57899999999999998853 4578888888887
Q ss_pred ccCCCCCCcccccccccCC---------cccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGC---------VSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c---------~sL~~l~~~~n~l~~ 114 (372)
+..+|.+|..|+.|++.++ ++|+.|+++.|.+..
T Consensus 274 L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 274 LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS 316 (788)
T ss_pred hhhhhhchhhcCEEECcCCccccccccccccceeECCCCcccc
Confidence 4567777777777766554 467777777776655
No 10
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=3.3e-08 Score=104.64 Aligned_cols=85 Identities=28% Similarity=0.443 Sum_probs=77.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcC-CCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRL-SSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L-~~L~~L~L~~n 78 (372)
|+|++|.+.|.+|+.++.|++|+.|+|++|+++ |.+|..+++|++|+.|+|++|+|+ .+|..++.+ .++..+++.+|
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls-g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCC-CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 689999999999999999999999999999998 999999999999999999999999 999988764 46788999999
Q ss_pred ccccCCCC
Q 017394 79 KMLQNLPR 86 (372)
Q Consensus 79 ~~l~~lP~ 86 (372)
..+...|.
T Consensus 526 ~~lc~~p~ 533 (623)
T PLN03150 526 AGLCGIPG 533 (623)
T ss_pred ccccCCCC
Confidence 87665554
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.63 E-value=3.5e-08 Score=105.91 Aligned_cols=89 Identities=24% Similarity=0.349 Sum_probs=64.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+. .+|..+. ++|+.|+|++|+|. .+|..+. .+|+.|+|++|++..+|..+. ++|+.|+|++|++
T Consensus 204 L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt--sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 204 LILDNNELK-SLPENLQ--GNIKTLYANSNQLT--SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKI 274 (754)
T ss_pred EEecCCCCC-cCChhhc--cCCCEEECCCCccc--cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCcc
Confidence 578888887 5666554 58899999999885 4787553 468888888888888887664 4788888888774
Q ss_pred ccCCCC-CCcccccccccCC
Q 017394 81 LQNLPR-LPARIQGISLDGC 99 (372)
Q Consensus 81 l~~lP~-lp~~l~~L~~~~c 99 (372)
. .+|. +|.+|+.|+++++
T Consensus 275 ~-~LP~~l~~sL~~L~Ls~N 293 (754)
T PRK15370 275 S-CLPENLPEELRYLSVYDN 293 (754)
T ss_pred C-ccccccCCCCcEEECCCC
Confidence 4 4664 5556666666554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.62 E-value=1.3e-07 Score=106.71 Aligned_cols=97 Identities=25% Similarity=0.390 Sum_probs=55.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCC-CcccchhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNN-FVTLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~-l~~lP~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+. .+|..+..+++|+.|+|++|+.. +.+|. ++.+++|+.|+|++|. +..+|.+|..+++|+.|++++|.
T Consensus 616 L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 616 LQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EECcCcccc-ccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 345555543 45555666666666666665433 44553 5566666666666653 34666666666666666666666
Q ss_pred cccCCCCC--CcccccccccCCc
Q 017394 80 MLQNLPRL--PARIQGISLDGCV 100 (372)
Q Consensus 80 ~l~~lP~l--p~~l~~L~~~~c~ 100 (372)
.++.+|.. ..+|+.|++++|.
T Consensus 693 ~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 693 NLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CcCccCCcCCCCCCCEEeCCCCC
Confidence 55555542 2345555555554
No 13
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.60 E-value=3.1e-09 Score=107.43 Aligned_cols=178 Identities=21% Similarity=0.286 Sum_probs=122.7
Q ss_pred ccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccccc
Q 017394 3 WSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQ 82 (372)
Q Consensus 3 Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~ 82 (372)
|.+|.+ -.+|..+.+|..|++|||+.|+++. +|..++.|+ |+.|-+++|+++.+|..|+.+..|..|+.+.|.+ +
T Consensus 105 Ly~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~ 179 (722)
T KOG0532|consen 105 LYHNCI-RTIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-Q 179 (722)
T ss_pred HHhccc-eecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh-h
Confidence 445554 4567778888888899998888854 888888776 8888888899998998888888888888888873 2
Q ss_pred CCCCCCcccccccccCCcccccccCcCccCCC------CCCcccccccccccccccchHHHHHHHHHhhcCCCCCCCc--
Q 017394 83 NLPRLPARIQGISLDGCVSLETLSDVLNLNEH------QIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDF-- 154 (372)
Q Consensus 83 ~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~------~~~~l~~~~~nc~kL~~~~~~~l~~l~~~l~~~~~~~~~~-- 154 (372)
.+|+.+. ++++|+.+....|++.- .+|.+.++|+ |+|+. .+|..|..|+. ||.+.+.+|.+
T Consensus 180 ---slpsql~-----~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfS-cNkis-~iPv~fr~m~~-Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 180 ---SLPSQLG-----YLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFS-CNKIS-YLPVDFRKMRH-LQVLQLENNPLQS 248 (722)
T ss_pred ---hchHHhh-----hHHHHHHHHHhhhhhhhCCHHHhCCceeeeecc-cCcee-ecchhhhhhhh-heeeeeccCCCCC
Confidence 4555666 67778888777776543 1233334555 56654 58999988887 77777777766
Q ss_pred ---eeecCCC-CCCcccccccCCCCeEEEecCCCCccCCCceeeeEEEEEe
Q 017394 155 ---CIVVPGS-EIPEWFEYQNNEGSSITISTPPKTYKNSKLVGYAACCVFR 201 (372)
Q Consensus 155 ---~~~lPg~-~IP~wf~~~~~~g~slt~~Lp~~~~~~~~~~gfa~C~v~~ 201 (372)
++|+-|. .|-.|++-|+. ..-..-.++. ...-.+|.-|-|-.
T Consensus 249 PPAqIC~kGkVHIFKyL~~qA~-q~~~a~~~~t----~~RP~~~~~c~~ed 294 (722)
T KOG0532|consen 249 PPAQICEKGKVHIFKYLSTQAC-QSGGALDLYT----TLRPRHFSSCHVED 294 (722)
T ss_pred ChHHHHhccceeeeeeecchhc-cccCCccccc----ccCCcccCCcchhh
Confidence 4677774 78889888776 2111111211 12345666666644
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=3.5e-08 Score=87.82 Aligned_cols=102 Identities=22% Similarity=0.263 Sum_probs=41.3
Q ss_pred CcccCCCCCCcCCcccc-CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhh-hcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLS-GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASI-YRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~-~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i-~~L~~L~~L~L~~n 78 (372)
|+|++|.|... +.++ .+.+|+.|+|++|.+. .++ .+..++.|+.|++++|.++.++..+ ..+++|+.|+|++|
T Consensus 24 L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~--~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 24 LNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT--KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp --------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred ccccccccccc--cchhhhhcCCCEEECCCCCCc--ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 67888888654 4566 5789999999999995 365 4788999999999999999997666 46899999999999
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
++. .+.+ +. .+..|++|+.|++..|.+..
T Consensus 99 ~I~-~l~~----l~--~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 99 KIS-DLNE----LE--PLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp ----SCCC----CG--GGGG-TT--EEE-TT-GGGG
T ss_pred cCC-ChHH----hH--HHHcCCCcceeeccCCcccc
Confidence 842 2222 22 23478999999998887653
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.54 E-value=3e-08 Score=96.86 Aligned_cols=98 Identities=28% Similarity=0.316 Sum_probs=73.2
Q ss_pred CCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhh--------------------
Q 017394 5 SDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASI-------------------- 64 (372)
Q Consensus 5 ~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i-------------------- 64 (372)
+|++.+-+|..++.+++|..|+|++|-+. .+|.+++.+..|+.||++.|.|..+|.++
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln--~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNNLLN--DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccchhh--hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccC
Confidence 34445667788899999999999999885 49999999999999999999988888764
Q ss_pred ----hcCCCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccCC
Q 017394 65 ----YRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNE 113 (372)
Q Consensus 65 ----~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~ 113 (372)
.++.+|..|||.+|.+ + .+|+.++ +|++|++|.+.+|.++
T Consensus 498 ~~~l~nm~nL~tLDL~nNdl-q---~IPp~Lg-----nmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNNDL-Q---QIPPILG-----NMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHhhhhhhcceeccCCCch-h---hCChhhc-----cccceeEEEecCCccC
Confidence 4555666677766652 2 3444555 7777777777776665
No 16
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=6.4e-08 Score=70.71 Aligned_cols=59 Identities=34% Similarity=0.490 Sum_probs=51.4
Q ss_pred CCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccccc
Q 017394 20 CSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 20 ~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~~ 80 (372)
++|+.|+|++|++. .+| ..+..+++|++|++++|+++.+|. .|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999999995 466 468899999999999999998884 789999999999999873
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.53 E-value=1.4e-08 Score=103.02 Aligned_cols=166 Identities=23% Similarity=0.201 Sum_probs=90.8
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+||+|.|...-++++....+|++|+|++|++. ..-+..+..|+.|+.|+|+.|.+..|-. .|..+++|+.|||++|.
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 466666666666666666666667777766665 3333446666666666666666665553 45666777777777776
Q ss_pred cccCCCCCC------cccccc-------------cccCCcccccccCcCccCCCCCCccccccccccccccc-----chH
Q 017394 80 MLQNLPRLP------ARIQGI-------------SLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGN-----YDL 135 (372)
Q Consensus 80 ~l~~lP~lp------~~l~~L-------------~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~~~-----~~~ 135 (372)
+...|..-. ++|+.| .++++.+|++|++..|.+....+..+..+ +..+|.=+ -+.
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 554443211 122222 33566777777777776544322211111 22222200 123
Q ss_pred HHHHHHHHhhcCCCCCCCceeecCCCCCCcccccccC
Q 017394 136 ALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNN 172 (372)
Q Consensus 136 ~l~~l~~~l~~~~~~~~~~~~~lPg~~IP~wf~~~~~ 172 (372)
.++|+.+||....+. +.++--...|+|+..|+.
T Consensus 456 ql~Wl~qWl~~~~lq----~sv~a~CayPe~Lad~~i 488 (873)
T KOG4194|consen 456 QLKWLAQWLYRRKLQ----SSVIAKCAYPEPLADQSI 488 (873)
T ss_pred cHHHHHHHHHhcccc----cceeeeccCCccccccee
Confidence 456676666544332 233344477899887765
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.49 E-value=4.4e-09 Score=102.54 Aligned_cols=96 Identities=29% Similarity=0.374 Sum_probs=55.8
Q ss_pred cCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccC
Q 017394 4 SSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQN 83 (372)
Q Consensus 4 s~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~ 83 (372)
.+|++ ..+|+.+.++.+|..|++.+|++. .+|++...|+.|+.||...|-++.+|..++.+.+|..|+|..|+ +..
T Consensus 145 ~~N~i-~slp~~~~~~~~l~~l~~~~n~l~--~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~ 220 (565)
T KOG0472|consen 145 TNNQI-SSLPEDMVNLSKLSKLDLEGNKLK--ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRF 220 (565)
T ss_pred ccccc-ccCchHHHHHHHHHHhhccccchh--hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-ccc
Confidence 33443 334445555566666666666653 35555555666666666666666777777777777777777776 344
Q ss_pred CCCCCcccccccccCCcccccccCcCccC
Q 017394 84 LPRLPARIQGISLDGCVSLETLSDVLNLN 112 (372)
Q Consensus 84 lP~lp~~l~~L~~~~c~sL~~l~~~~n~l 112 (372)
+|++| +|..|..++...|.+
T Consensus 221 lPef~---------gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 221 LPEFP---------GCSLLKELHVGENQI 240 (565)
T ss_pred CCCCC---------ccHHHHHHHhcccHH
Confidence 66555 444455555444443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.48 E-value=7.6e-08 Score=103.35 Aligned_cols=88 Identities=19% Similarity=0.372 Sum_probs=63.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+. .+|..+. .+|+.|+|++|++. .+|..+. ++|+.|+|++|+++.+|..+. .+|+.|+|++|++
T Consensus 225 L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 225 LYANSNQLT-SIPATLP--DTIQEMELSINRIT--ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred EECCCCccc-cCChhhh--ccccEEECcCCccC--cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc
Confidence 578888876 5666553 47889999999885 4887764 578899999999888887664 4788999988875
Q ss_pred ccCCCC-CCcccccccccC
Q 017394 81 LQNLPR-LPARIQGISLDG 98 (372)
Q Consensus 81 l~~lP~-lp~~l~~L~~~~ 98 (372)
. .+|. +|.++..|++++
T Consensus 296 t-~LP~~lp~sL~~L~Ls~ 313 (754)
T PRK15370 296 R-TLPAHLPSGITHLNVQS 313 (754)
T ss_pred c-cCcccchhhHHHHHhcC
Confidence 4 4553 444555555544
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.48 E-value=1.8e-07 Score=100.40 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=46.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCC-----------------CCCCCEEeccCCCCcccchh
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGD-----------------LCSLEELHLSGNNFVTLLAS 63 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~-----------------L~~L~~L~Ls~N~l~~lP~~ 63 (372)
|+|++|.+.. +|. .+++|+.|+|++|++. .+|..... ..+|+.|+|++|+|+.+|..
T Consensus 287 L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~--~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l 360 (788)
T PRK15387 287 LWIFGNQLTS-LPV---LPPGLQELSVSDNQLA--SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL 360 (788)
T ss_pred EECcCCcccc-ccc---cccccceeECCCCccc--cCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC
Confidence 3566676653 443 2467788888888775 25442111 12466666666666666642
Q ss_pred hhcCCCCcEEEccccccccCCCCCCccccccccc
Q 017394 64 IYRLSSLRGIKLEECKMLQNLPRLPARIQGISLD 97 (372)
Q Consensus 64 i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~ 97 (372)
..+|+.|++++|++. .+|.+|.+|+.|+++
T Consensus 361 ---p~~L~~L~Ls~N~L~-~LP~l~~~L~~LdLs 390 (788)
T PRK15387 361 ---PSELYKLWAYNNRLT-SLPALPSGLKELIVS 390 (788)
T ss_pred ---Ccccceehhhccccc-cCcccccccceEEec
Confidence 234555555555532 355555444444443
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.41 E-value=1.9e-07 Score=94.99 Aligned_cols=79 Identities=23% Similarity=0.290 Sum_probs=61.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
||||.|.|+...-+++..=.+++.|+|++|.+++ .=-..|..|.+|..|.|+.|.++.||. .|++|++|+.|+|..|.
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 5788888877766777777788888888888852 223457788888889999999998884 66779999999998887
Q ss_pred c
Q 017394 80 M 80 (372)
Q Consensus 80 ~ 80 (372)
+
T Consensus 233 i 233 (873)
T KOG4194|consen 233 I 233 (873)
T ss_pred e
Confidence 3
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.36 E-value=5.1e-08 Score=103.43 Aligned_cols=84 Identities=29% Similarity=0.435 Sum_probs=69.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~ 79 (372)
|+|.+|.+....-+-+.++++|+.|+|++|.| +.+|.. +.+|..|+.|+||||+++.||.++..+..|++|...+|.
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL--~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL--NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeeccccc--ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc
Confidence 57889999888777899999999999999999 558875 788999999999999999999988877777777777666
Q ss_pred cccCCCCC
Q 017394 80 MLQNLPRL 87 (372)
Q Consensus 80 ~l~~lP~l 87 (372)
+ ..+|++
T Consensus 442 l-~~fPe~ 448 (1081)
T KOG0618|consen 442 L-LSFPEL 448 (1081)
T ss_pred e-eechhh
Confidence 3 345543
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=4.2e-07 Score=66.33 Aligned_cols=56 Identities=30% Similarity=0.386 Sum_probs=49.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCC
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNF 57 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l 57 (372)
|+|++|++....+..|.++++|+.|+|++|++. ..-|..|..+++|++|++++|+|
T Consensus 6 L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 6 LDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp EEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred EECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999998887789999999999999999996 44455799999999999999975
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=5.3e-07 Score=80.30 Aligned_cols=98 Identities=26% Similarity=0.327 Sum_probs=47.7
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCccc-CCCCCCCEEeccCCCCcccc--hhhhcCCCCcEEEccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLL--ASIYRLSSLRGIKLEE 77 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i-~~L~~L~~L~Ls~N~l~~lP--~~i~~L~~L~~L~L~~ 77 (372)
|+||+|.|... +.+..|+.|+.|+|++|.++ .++..+ ..+++|+.|+|++|++..+- ..+..+++|+.|+|.+
T Consensus 47 L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~--~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 47 LDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS--SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp EE-TTS--S----TT----TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred EECCCCCCccc--cCccChhhhhhcccCCCCCC--ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence 68999999765 35888999999999999996 376555 46899999999999998554 3678899999999999
Q ss_pred cccccCCCCCCcccccccccCCcccccccC
Q 017394 78 CKMLQNLPRLPARIQGISLDGCVSLETLSD 107 (372)
Q Consensus 78 n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~ 107 (372)
|+.... + .-+..-+..+++|+.|+.
T Consensus 123 NPv~~~-~----~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 123 NPVCEK-K----NYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -GGGGS-T----THHHHHHHH-TT-SEETT
T ss_pred Ccccch-h----hHHHHHHHHcChhheeCC
Confidence 986532 2 222234446777777764
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.09 E-value=4.1e-07 Score=96.72 Aligned_cols=98 Identities=22% Similarity=0.374 Sum_probs=82.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+||+|.+....-..+.+|..|+.|+||+|.|. .||..+..++.|++|...+|.+..+| .+..++.|+.+||+.|.+
T Consensus 388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~--~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLT--TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred eeecccccccCCHHHHhchHHhHHHhcccchhh--hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchh
Confidence 689999985444456788999999999999995 59999999999999999999999999 899999999999999985
Q ss_pred cc-CCCC-CC-cccccccccCCcc
Q 017394 81 LQ-NLPR-LP-ARIQGISLDGCVS 101 (372)
Q Consensus 81 l~-~lP~-lp-~~l~~L~~~~c~s 101 (372)
.. .+|. +| +.|++|++++.+.
T Consensus 465 ~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 465 SEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhCCCcccceeeccCCcc
Confidence 33 3443 56 7888888877653
No 26
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=3.5e-06 Score=57.65 Aligned_cols=39 Identities=31% Similarity=0.513 Sum_probs=18.7
Q ss_pred CCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc
Q 017394 21 SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL 61 (372)
Q Consensus 21 ~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP 61 (372)
+|++|+|++|++. .+|+.+++|++|+.|++++|+|+.+|
T Consensus 2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4555555555553 25544555555555555555555443
No 27
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=6e-06 Score=56.48 Aligned_cols=37 Identities=30% Similarity=0.402 Sum_probs=32.5
Q ss_pred CCCCEEeccCCCCcccchhhhcCCCCcEEEccccccc
Q 017394 45 CSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKML 81 (372)
Q Consensus 45 ~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l 81 (372)
++|++|+|++|+|+.+|..|.+|++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5799999999999999998999999999999999843
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=2.6e-06 Score=80.82 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=26.2
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL 61 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP 61 (372)
||||+|.| ..+-.+..-++.++.|++|.|.+.. + .++..|++|+.|||++|.++++-
T Consensus 289 lDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~--v-~nLa~L~~L~~LDLS~N~Ls~~~ 345 (490)
T KOG1259|consen 289 LDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRT--V-QNLAELPQLQLLDLSGNLLAECV 345 (490)
T ss_pred ccccccch-hhhhhhhhhccceeEEeccccceee--e-hhhhhcccceEeecccchhHhhh
Confidence 34555554 2233334444555555555555531 2 22445555555555555444333
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.94 E-value=2.8e-06 Score=92.85 Aligned_cols=88 Identities=28% Similarity=0.275 Sum_probs=71.5
Q ss_pred ccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccCCCCCCccccc
Q 017394 14 SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQG 93 (372)
Q Consensus 14 ~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~ 93 (372)
..|..|+.|++|||++|.-. +.+|..|+.|-+|++|+|+++.+..+|.++++|.+|.+|++..+..+..+|....
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~---- 639 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILL---- 639 (889)
T ss_pred HHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhh----
Confidence 34778999999999998655 7899999999999999999999999999999999999999999887765543221
Q ss_pred ccccCCcccccccCcCc
Q 017394 94 ISLDGCVSLETLSDVLN 110 (372)
Q Consensus 94 L~~~~c~sL~~l~~~~n 110 (372)
.+.+|++|.+...
T Consensus 640 ----~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 640 ----ELQSLRVLRLPRS 652 (889)
T ss_pred ----hcccccEEEeecc
Confidence 3455555555443
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.91 E-value=1.3e-06 Score=88.82 Aligned_cols=110 Identities=24% Similarity=0.259 Sum_probs=68.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|||+.|+++ .+|..+..|+ |+.|-+++|++ +.+|..|+.+..|..||.+.|++.++|+.++.|.+|+.|++..|.+
T Consensus 126 l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl--~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 126 LDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL--TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL 201 (722)
T ss_pred hhhccchhh-cCChhhhcCc-ceeEEEecCcc--ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh
Confidence 467777763 4455566655 67777777777 4577777777777777777777777777777777777777766664
Q ss_pred ccCCCCCC-ccccccc------------ccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLP-ARIQGIS------------LDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp-~~l~~L~------------~~~c~sL~~l~~~~n~l~~ 114 (372)
+.-.+++- ..|..|| +.+++.|++|-+..|.++.
T Consensus 202 ~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 202 EDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 33111111 0122222 2356677777777776655
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.87 E-value=7.1e-07 Score=87.22 Aligned_cols=111 Identities=24% Similarity=0.278 Sum_probs=84.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccC-CCCcccch-hhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSG-NNFVTLLA-SIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~-N~l~~lP~-~i~~L~~L~~L~L~~n 78 (372)
|+|..|+|....|..|+.+++|+.|||+.|+|+ ..-|..|.+|++|..|-+-+ |+|+.||. .|++|..|+.|.+.-|
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 578899999999999999999999999999997 56688899999988887766 99999995 6889999998888877
Q ss_pred cccc-------CCCCC-----Cc----ccccccccCCcccccccCcCccC
Q 017394 79 KMLQ-------NLPRL-----PA----RIQGISLDGCVSLETLSDVLNLN 112 (372)
Q Consensus 79 ~~l~-------~lP~l-----p~----~l~~L~~~~c~sL~~l~~~~n~l 112 (372)
++.- .+|.+ +. .+..-.+.++.+++++++..|.+
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 6321 12211 11 11112445677888888877763
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.72 E-value=5.4e-06 Score=79.46 Aligned_cols=69 Identities=28% Similarity=0.350 Sum_probs=43.7
Q ss_pred CCccccCCCCCCEEeecCCCCCCCCCCcccCCCCC---CCEEeccCCCCc-----ccchhhhcC-CCCcEEEccccccc
Q 017394 12 LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCS---LEELHLSGNNFV-----TLLASIYRL-SSLRGIKLEECKML 81 (372)
Q Consensus 12 lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~---L~~L~Ls~N~l~-----~lP~~i~~L-~~L~~L~L~~n~~l 81 (372)
++..+..+++|+.|+|++|.+. +..+..+..+.+ |+.|++++|++. .+...+..+ ++|+.|++++|.+.
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALG-PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCC-hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 3345566777777777777775 344544544444 777777777766 233455566 67777777777654
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.66 E-value=1.8e-05 Score=78.78 Aligned_cols=82 Identities=26% Similarity=0.408 Sum_probs=68.0
Q ss_pred CcccCCCCCCcCCccccCCC-CCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLC-SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~ 79 (372)
|++.+|.+ ..+|+....+. +|+.|++++|.+. .+|..++.+++|+.|+++.|++..+|...+.++.|+.|++++|+
T Consensus 121 L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 121 LDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK 197 (394)
T ss_pred EecCCccc-ccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc
Confidence 45667776 45566677774 9999999999995 48888999999999999999999999888899999999999998
Q ss_pred cccCCCC
Q 017394 80 MLQNLPR 86 (372)
Q Consensus 80 ~l~~lP~ 86 (372)
+ ..+|.
T Consensus 198 i-~~l~~ 203 (394)
T COG4886 198 I-SDLPP 203 (394)
T ss_pred c-ccCch
Confidence 3 34444
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.64 E-value=9.8e-06 Score=77.69 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=60.6
Q ss_pred CcccCCCCCCcCCccccCCCC---CCEEeecCCCCCCC---CCCcccCCC-CCCCEEeccCCCCc-----ccchhhhcCC
Q 017394 1 MPWSSDPVALSLSSSLSGLCS---LTKLDISYCDLGEG---AIPSSIGDL-CSLEELHLSGNNFV-----TLLASIYRLS 68 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~---L~~L~Ls~n~l~~~---~lP~~i~~L-~~L~~L~Ls~N~l~-----~lP~~i~~L~ 68 (372)
|+|++|.+.+..+..+..+.. |+.|++++|++.+. .+...+..+ ++|+.|+|++|+++ .++..+..+.
T Consensus 86 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 86 LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165 (319)
T ss_pred EEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence 578888887777776666665 99999999988621 123345666 88999999999888 4555677788
Q ss_pred CCcEEEccccccc
Q 017394 69 SLRGIKLEECKML 81 (372)
Q Consensus 69 ~L~~L~L~~n~~l 81 (372)
+|+.|++++|.+.
T Consensus 166 ~L~~L~l~~n~l~ 178 (319)
T cd00116 166 DLKELNLANNGIG 178 (319)
T ss_pred CcCEEECcCCCCc
Confidence 8999999988765
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.57 E-value=3.4e-05 Score=76.90 Aligned_cols=81 Identities=30% Similarity=0.458 Sum_probs=63.7
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCC-CCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLC-SLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~-~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
+++.|.+...+ ..+..++.++.|++.+|.+.+ ||..+..++ +|+.|++++|++..+|..+..+++|+.|++++|++
T Consensus 99 ~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 99 DLNLNRLRSNI-SELLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eccccccccCc-hhhhcccceeEEecCCccccc--CccccccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 34444543333 335667889999999999964 999888885 99999999999999998999999999999999984
Q ss_pred ccCCCC
Q 017394 81 LQNLPR 86 (372)
Q Consensus 81 l~~lP~ 86 (372)
. .+|.
T Consensus 176 ~-~l~~ 180 (394)
T COG4886 176 S-DLPK 180 (394)
T ss_pred h-hhhh
Confidence 4 3444
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00017 Score=72.27 Aligned_cols=54 Identities=26% Similarity=0.276 Sum_probs=30.4
Q ss_pred CcccCCCCCCcCCccccCC-CCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCC-CCcccch
Q 017394 1 MPWSSDPVALSLSSSLSGL-CSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGN-NFVTLLA 62 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L-~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N-~l~~lP~ 62 (372)
|+++++.+ ..+| .+ .+|+.|.+++|.-. ..+|..+ .++|+.|++++| ++..+|.
T Consensus 57 L~Is~c~L-~sLP----~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 57 LYIKDCDI-ESLP----VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred EEeCCCCC-cccC----CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccccccc
Confidence 46676654 3334 23 25777777776443 4466544 246666777666 4445554
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.45 E-value=4.2e-05 Score=83.84 Aligned_cols=77 Identities=27% Similarity=0.377 Sum_probs=68.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~ 79 (372)
||||+|.-.+.+|.+|+.|-+|++|+|++..+. .+|..+++|+.|.+||+..+... .+|..+..|++|++|.+..-.
T Consensus 576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred EECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 689999999999999999999999999999996 59999999999999999988755 666666679999999986543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.43 E-value=3.2e-05 Score=73.60 Aligned_cols=68 Identities=26% Similarity=0.174 Sum_probs=58.8
Q ss_pred CcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 10 LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 10 ~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|.+-.++..+..|++||||+|.++. +-.+..-++.++.|+++.|.+..+-. +..|++|+.|||++|.+
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLL 341 (490)
T ss_pred CceEEecchHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchh
Confidence 4444556678899999999999964 88888889999999999999998874 89999999999999974
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.32 E-value=2e-05 Score=67.07 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=47.1
Q ss_pred cccCCCCCCcCCcc---ccCCCCCCEEeecCCCCCCCCCCcccCCC-CCCCEEeccCCCCcccchhhhcCCCCcEEEccc
Q 017394 2 PWSSDPVALSLSSS---LSGLCSLTKLDISYCDLGEGAIPSSIGDL-CSLEELHLSGNNFVTLLASIYRLSSLRGIKLEE 77 (372)
Q Consensus 2 ~Ls~N~i~~~lP~s---i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L-~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~ 77 (372)
+|++..+ +.+++. +.....|+..+|++|.+ ..+|..+... +.++.|+|+.|.++.+|..+..++.|+.|+++.
T Consensus 33 dLssc~l-m~i~davy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 33 DLSSCQL-MYIADAVYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred ccccchh-hHHHHHHHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 4555554 223333 23344555667777777 3466665443 466777777777777777777777777777777
Q ss_pred cccc
Q 017394 78 CKML 81 (372)
Q Consensus 78 n~~l 81 (372)
|++.
T Consensus 110 N~l~ 113 (177)
T KOG4579|consen 110 NPLN 113 (177)
T ss_pred Cccc
Confidence 7643
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.16 E-value=3.9e-05 Score=80.29 Aligned_cols=74 Identities=30% Similarity=0.364 Sum_probs=43.1
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~ 79 (372)
|||++|++... ..+..|++|+.|||++|.|. .+|.- .... .|+.|+|++|-+++|- .|.+|.+|+.|||+.|-
T Consensus 192 LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc-~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 192 LNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR--HVPQLSMVGC-KLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNL 265 (1096)
T ss_pred hccchhhhhhh--HHHHhcccccccccccchhc--cccccchhhh-hheeeeecccHHHhhh-hHHhhhhhhccchhHhh
Confidence 46666666554 24566666666666666663 25432 1122 2666666666666554 56666666666666665
Q ss_pred c
Q 017394 80 M 80 (372)
Q Consensus 80 ~ 80 (372)
+
T Consensus 266 l 266 (1096)
T KOG1859|consen 266 L 266 (1096)
T ss_pred h
Confidence 3
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.07 E-value=0.00021 Score=70.23 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=70.8
Q ss_pred cccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccccccCCCCCCccccc
Q 017394 15 SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECKMLQNLPRLPARIQG 93 (372)
Q Consensus 15 si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~ 93 (372)
.|..|++|+.|+|++|+++ +.-+..|..+.+|+.|.|.+|++..+- ..|.+++.|+.|+|.+|++...-|. ..
T Consensus 269 cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~---aF-- 342 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG---AF-- 342 (498)
T ss_pred HHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc---cc--
Confidence 5889999999999999997 566778999999999999999999776 4688999999999999997653332 22
Q ss_pred ccccCCcccccccCcCccC
Q 017394 94 ISLDGCVSLETLSDVLNLN 112 (372)
Q Consensus 94 L~~~~c~sL~~l~~~~n~l 112 (372)
....+|.+|.+-.|.+
T Consensus 343 ---~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 343 ---QTLFSLSTLNLLSNPF 358 (498)
T ss_pred ---cccceeeeeehccCcc
Confidence 2556677776655543
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0005 Score=68.41 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=59.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCC--cccCCCCCCCEEeccCCCCc--ccchh-----hhcCCCCc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIP--SSIGDLCSLEELHLSGNNFV--TLLAS-----IYRLSSLR 71 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP--~~i~~L~~L~~L~Ls~N~l~--~lP~~-----i~~L~~L~ 71 (372)
|+|++|+..+..-.+...+..|+.|||++|++.+ .+ ..++.|+.|..|+++.+.+. .+|+. ...+++|+
T Consensus 227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~--~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 227 LYLEANEIILIKATSTKILQTLQELDLSNNNLID--FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred hhhhcccccceecchhhhhhHHhhccccCCcccc--cccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 5678886444444455667889999999998864 44 56888999999999999888 55654 46778999
Q ss_pred EEEcccccc
Q 017394 72 GIKLEECKM 80 (372)
Q Consensus 72 ~L~L~~n~~ 80 (372)
+|++..|+.
T Consensus 305 ~L~i~~N~I 313 (505)
T KOG3207|consen 305 YLNISENNI 313 (505)
T ss_pred eeecccCcc
Confidence 999999984
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.87 E-value=0.00052 Score=69.24 Aligned_cols=74 Identities=27% Similarity=0.306 Sum_probs=53.9
Q ss_pred ccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 3 WSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 3 Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|..|.+.... ..+..+++|+.|++.+|++. .+...+..+++|++|+|++|.|+.+. .+..++.|+.|++.+|.+
T Consensus 79 l~~n~i~~~~-~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 79 LRQNLIAKIL-NHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLI 152 (414)
T ss_pred cchhhhhhhh-cccccccceeeeeccccchh--hcccchhhhhcchheecccccccccc-chhhccchhhheeccCcc
Confidence 4445554311 33667888888888888884 35555778888888888888888776 567777788888888874
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.79 E-value=0.002 Score=64.66 Aligned_cols=72 Identities=24% Similarity=0.432 Sum_probs=54.2
Q ss_pred ccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccC-CCCcccchhhhcCCCCcEEEccccccccCCCCCCcccccc
Q 017394 16 LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSG-NNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGI 94 (372)
Q Consensus 16 i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~-N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L 94 (372)
+..+.+++.|++++|.|. .+|. -..+|+.|++++ ++++.+|..+. ++|++|++++|..+. .+|.+|+.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~--sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~---sLP~sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE--SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS---GLPESVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCCCc--ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc---ccccccceE
Confidence 445788999999999885 4882 234699999987 57778887653 589999999996444 566677776
Q ss_pred ccc
Q 017394 95 SLD 97 (372)
Q Consensus 95 ~~~ 97 (372)
++.
T Consensus 118 ~L~ 120 (426)
T PRK15386 118 EIK 120 (426)
T ss_pred EeC
Confidence 654
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.59 E-value=0.00014 Score=76.21 Aligned_cols=87 Identities=24% Similarity=0.245 Sum_probs=49.4
Q ss_pred ccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccccccCCCCCCcccc
Q 017394 14 SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECKMLQNLPRLPARIQ 92 (372)
Q Consensus 14 ~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~ 92 (372)
.++.-++.|+.|||+.|++.. .- .+..++.|+.|||++|.++.+|. +...+ +|+.|.+++|.+.. + .
T Consensus 181 ~SLqll~ale~LnLshNk~~~--v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t-L-------~ 248 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTK--VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT-L-------R 248 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhh--hH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHh-h-------h
Confidence 344445666666666666642 22 56666666666666666666663 22222 36666666665221 1 1
Q ss_pred cccccCCcccccccCcCccCCC
Q 017394 93 GISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 93 ~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+.++.+|+.|+++.|.+..
T Consensus 249 --gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 249 --GIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred --hHHhhhhhhccchhHhhhhc
Confidence 33366777888888776654
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.58 E-value=0.00069 Score=68.35 Aligned_cols=101 Identities=25% Similarity=0.298 Sum_probs=75.1
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|..|.|..... .+..+++|+.|+|++|.|.. +. .+..++.|+.|++++|.+..++ .+..+..|+.+++++|.+
T Consensus 100 l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~--i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 100 LDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK--LE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRI 174 (414)
T ss_pred eeccccchhhccc-chhhhhcchheecccccccc--cc-chhhccchhhheeccCcchhcc-CCccchhhhcccCCcchh
Confidence 5678888866542 26789999999999999963 43 3677888999999999999887 566689999999999985
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.. +... . +..+.+|+.+.+..|....
T Consensus 175 ~~-ie~~------~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 175 VD-IEND------E-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred hh-hhhh------h-hhhccchHHHhccCCchhc
Confidence 43 1110 1 2367777777777776543
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.54 E-value=0.0003 Score=60.06 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=25.2
Q ss_pred CCEEeecCCCCCCCCCCcc---cCCCCCCCEEeccCCCCcccchhhhcC-CCCcEEEccccc
Q 017394 22 LTKLDISYCDLGEGAIPSS---IGDLCSLEELHLSGNNFVTLLASIYRL-SSLRGIKLEECK 79 (372)
Q Consensus 22 L~~L~Ls~n~l~~~~lP~~---i~~L~~L~~L~Ls~N~l~~lP~~i~~L-~~L~~L~L~~n~ 79 (372)
+..|+|+.|.+ +.++.. +.....|...+|++|.|..+|..+... +.++.|+|.+|+
T Consensus 29 ~h~ldLssc~l--m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne 88 (177)
T KOG4579|consen 29 LHFLDLSSCQL--MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE 88 (177)
T ss_pred hhhcccccchh--hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh
Confidence 33445555554 223332 222333444455555555555444332 245555555554
No 48
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.23 E-value=0.0017 Score=37.44 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=12.9
Q ss_pred CCCEEeccCCCCcccchhhhc
Q 017394 46 SLEELHLSGNNFVTLLASIYR 66 (372)
Q Consensus 46 ~L~~L~Ls~N~l~~lP~~i~~ 66 (372)
+|++|||++|+|+.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.03 E-value=0.0071 Score=54.83 Aligned_cols=84 Identities=25% Similarity=0.330 Sum_probs=59.7
Q ss_pred CCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhc-CCCCcEEEccccccccCCCCCCcccccccccC
Q 017394 20 CSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYR-LSSLRGIKLEECKMLQNLPRLPARIQGISLDG 98 (372)
Q Consensus 20 ~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~-L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~ 98 (372)
.....+||++|.+. .++ .+..++.|.+|.|+.|.|+.|-..+.. +++|..|.|.+|. ++.+-++- -+..
T Consensus 42 d~~d~iDLtdNdl~--~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~------pLa~ 111 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLD------PLAS 111 (233)
T ss_pred cccceecccccchh--hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcc------hhcc
Confidence 35678899999884 343 477888999999999999977766654 5679999999887 33333321 1237
Q ss_pred CcccccccCcCccCC
Q 017394 99 CVSLETLSDVLNLNE 113 (372)
Q Consensus 99 c~sL~~l~~~~n~l~ 113 (372)
|+.|+.|.+-.|...
T Consensus 112 ~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVE 126 (233)
T ss_pred CCccceeeecCCchh
Confidence 888888887777554
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.98 E-value=0.0046 Score=57.84 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=47.7
Q ss_pred CCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCC--CCc-ccchhhhcCCCCcEEEcccccc
Q 017394 12 LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGN--NFV-TLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 12 lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N--~l~-~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
+..-.-.+..|+.|.+.++.++. -..+-.|++|+.|.++.| ..+ .++.....+++|++|++++|++
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 44444456677777777777652 234566889999999999 444 6666667779999999999974
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.69 E-value=0.01 Score=55.58 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=6.9
Q ss_pred cCCCCcEEEcccc
Q 017394 66 RLSSLRGIKLEEC 78 (372)
Q Consensus 66 ~L~~L~~L~L~~n 78 (372)
.|++|+.|.++.|
T Consensus 63 ~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 63 KLPKLKKLELSDN 75 (260)
T ss_pred CcchhhhhcccCC
Confidence 4455555555555
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.59 E-value=0.0046 Score=66.39 Aligned_cols=86 Identities=22% Similarity=0.214 Sum_probs=55.6
Q ss_pred CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccCCCCCCccccccccc
Q 017394 18 GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLD 97 (372)
Q Consensus 18 ~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~ 97 (372)
.||+|+.|.+++=.+....+-.-..++++|..||+|+.+++.+ .+|++|++|+.|.+.+=.+.. -..+. ++-
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~-----~~~l~--~LF 217 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFES-----YQDLI--DLF 217 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCc-----hhhHH--HHh
Confidence 3688888888876664333333355678888888888888877 688888888888777644321 01111 333
Q ss_pred CCcccccccCcCcc
Q 017394 98 GCVSLETLSDVLNL 111 (372)
Q Consensus 98 ~c~sL~~l~~~~n~ 111 (372)
+++.|+.|+.+...
T Consensus 218 ~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 218 NLKKLRVLDISRDK 231 (699)
T ss_pred cccCCCeeeccccc
Confidence 66677777766543
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.49 E-value=0.02 Score=51.99 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=51.0
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCC-CCCCCEEeccCCCCcccch--hhhcCCCCcEEEccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGD-LCSLEELHLSGNNFVTLLA--SIYRLSSLRGIKLEE 77 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~-L~~L~~L~Ls~N~l~~lP~--~i~~L~~L~~L~L~~ 77 (372)
+||+.|.+... +.|..++.|.+|.|++|.|+. |-+.+.. +++|..|.|.+|++..+-. -+..+++|++|.+-+
T Consensus 47 iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 47 IDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ecccccchhhc--ccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 46777776444 346677788888888888853 5555544 4568888888887775542 355677788887777
Q ss_pred cc
Q 017394 78 CK 79 (372)
Q Consensus 78 n~ 79 (372)
|.
T Consensus 123 Np 124 (233)
T KOG1644|consen 123 NP 124 (233)
T ss_pred Cc
Confidence 76
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=0.012 Score=56.31 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=43.8
Q ss_pred CcccCCCCCC--cCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc--ccchhhhcCCCCcEEEcc
Q 017394 1 MPWSSDPVAL--SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV--TLLASIYRLSSLRGIKLE 76 (372)
Q Consensus 1 L~Ls~N~i~~--~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~--~lP~~i~~L~~L~~L~L~ 76 (372)
|||..|.|+. .+-.-+.+|+.|++|+|+.|.++ ..|-..-..+++|+.|-|.|..+. ..-+.+..+++++.|.++
T Consensus 76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS 154 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMS 154 (418)
T ss_pred hhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhc
Confidence 4556666542 23333456677777777777664 222221134556666666666544 555556666666666666
Q ss_pred ccc
Q 017394 77 ECK 79 (372)
Q Consensus 77 ~n~ 79 (372)
.|.
T Consensus 155 ~N~ 157 (418)
T KOG2982|consen 155 DNS 157 (418)
T ss_pred cch
Confidence 664
No 55
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.024 Score=56.80 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=62.9
Q ss_pred CcccCCCCCCcC-CccccCCCCCCEEeecCCCCCCCCCCcc-----cCCCCCCCEEeccCCCCcccch--hhhcCCCCcE
Q 017394 1 MPWSSDPVALSL-SSSLSGLCSLTKLDISYCDLGEGAIPSS-----IGDLCSLEELHLSGNNFVTLLA--SIYRLSSLRG 72 (372)
Q Consensus 1 L~Ls~N~i~~~l-P~si~~L~~L~~L~Ls~n~l~~~~lP~~-----i~~L~~L~~L~Ls~N~l~~lP~--~i~~L~~L~~ 72 (372)
|||++|++...- -.-++.|+.|+.|+++.|.+.+-.+|+. ...+++|++|++..|++...|. .+..+.+|+.
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~ 330 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH 330 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhh
Confidence 789999976432 2457889999999999999865445654 4567999999999999986663 6777788888
Q ss_pred EEccccccc
Q 017394 73 IKLEECKML 81 (372)
Q Consensus 73 L~L~~n~~l 81 (372)
|....|.+.
T Consensus 331 l~~~~n~ln 339 (505)
T KOG3207|consen 331 LRITLNYLN 339 (505)
T ss_pred hhccccccc
Confidence 887777654
No 56
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.61 E-value=0.021 Score=30.75 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=5.9
Q ss_pred CCCEEeccCCCCcccc
Q 017394 46 SLEELHLSGNNFVTLL 61 (372)
Q Consensus 46 ~L~~L~Ls~N~l~~lP 61 (372)
+|+.|+|++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555544444
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=0.015 Score=55.65 Aligned_cols=100 Identities=21% Similarity=0.222 Sum_probs=57.6
Q ss_pred CccccCCCCCCEEeecCCCCCCCCCCcccC-CCCCCCEEeccCCCCc---ccchhhhcCCCCcEEEccccccccCCCCCC
Q 017394 13 SSSLSGLCSLTKLDISYCDLGEGAIPSSIG-DLCSLEELHLSGNNFV---TLLASIYRLSSLRGIKLEECKMLQNLPRLP 88 (372)
Q Consensus 13 P~si~~L~~L~~L~Ls~n~l~~~~lP~~i~-~L~~L~~L~Ls~N~l~---~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp 88 (372)
|-.+..+..|..|-|.++.+-...--..|+ ..+.++.|||.+|.++ .+-.-+.+|+.|++|+|+.|.+...|-.+|
T Consensus 38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp 117 (418)
T KOG2982|consen 38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP 117 (418)
T ss_pred eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence 333444445556666666653211111222 2466788888888877 455556788888888888887665555554
Q ss_pred c---ccccc--------------cccCCcccccccCcCccC
Q 017394 89 A---RIQGI--------------SLDGCVSLETLSDVLNLN 112 (372)
Q Consensus 89 ~---~l~~L--------------~~~~c~sL~~l~~~~n~l 112 (372)
. +++.| .+.+++.++.|+++.|.+
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 2 23333 123455666777776644
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.004 Score=59.02 Aligned_cols=102 Identities=25% Similarity=0.209 Sum_probs=74.6
Q ss_pred CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccCCCCCCccccccccc
Q 017394 18 GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLD 97 (372)
Q Consensus 18 ~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~ 97 (372)
.|.+.+.|++.+|.|.+ | .-...|+.|+.|-|+-|++++|- .+..+++|+.|+|..|.+ +.+- .|. ++.
T Consensus 17 dl~~vkKLNcwg~~L~D--I-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I----~sld-EL~--YLk 85 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD--I-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCI----ESLD-ELE--YLK 85 (388)
T ss_pred HHHHhhhhcccCCCccH--H-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhccc----ccHH-HHH--HHh
Confidence 35677889999999864 3 23567899999999999999886 678999999999999873 2211 122 445
Q ss_pred CCcccccccCcCccCCCCCCc-----cccccccccccc
Q 017394 98 GCVSLETLSDVLNLNEHQIPN-----IHVHCVDCLKLA 130 (372)
Q Consensus 98 ~c~sL~~l~~~~n~l~~~~~~-----l~~~~~nc~kL~ 130 (372)
++++|++|++..|.+.+.... ....+.|..||+
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 899999999999987664321 112566777776
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.98 E-value=0.017 Score=33.12 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=17.5
Q ss_pred CCCEEeecCCCCCCCCCCcccCCC
Q 017394 21 SLTKLDISYCDLGEGAIPSSIGDL 44 (372)
Q Consensus 21 ~L~~L~Ls~n~l~~~~lP~~i~~L 44 (372)
+|++|||++|+++ .||..|++|
T Consensus 1 ~L~~Ldls~n~l~--~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT--SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES--EEGTTTTT-
T ss_pred CccEEECCCCcCE--eCChhhcCC
Confidence 5899999999995 599887654
No 60
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.05 E-value=0.0021 Score=59.48 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=34.0
Q ss_pred ccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394 16 LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 16 i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~ 79 (372)
+..+...+.|||+.|++. .+-..+..++.|..|+++.|.+..+|..++.+..++.+++.+|.
T Consensus 38 i~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN 99 (326)
T ss_pred hhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc
Confidence 444555556666666553 24444555555555555555555555555555555555555554
No 61
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.77 E-value=0.099 Score=30.99 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=15.8
Q ss_pred CCCCCEEeccCCCCcccchhh
Q 017394 44 LCSLEELHLSGNNFVTLLASI 64 (372)
Q Consensus 44 L~~L~~L~Ls~N~l~~lP~~i 64 (372)
|++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467788888888888887653
No 62
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.77 E-value=0.099 Score=30.99 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=15.8
Q ss_pred CCCCCEEeccCCCCcccchhh
Q 017394 44 LCSLEELHLSGNNFVTLLASI 64 (372)
Q Consensus 44 L~~L~~L~Ls~N~l~~lP~~i 64 (372)
|++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467788888888888887653
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.94 E-value=0.068 Score=52.18 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=32.1
Q ss_pred CCCCCEEeccCCCCcccch-----hhhcCCCCcEEEccccccccCCCCCCccc--ccccccCCcccccccCcCccCCC
Q 017394 44 LCSLEELHLSGNNFVTLLA-----SIYRLSSLRGIKLEECKMLQNLPRLPARI--QGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 44 L~~L~~L~Ls~N~l~~lP~-----~i~~L~~L~~L~L~~n~~l~~lP~lp~~l--~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
-+.|+++...+|.+..-+. .+...+.|+.+.+..|.+. |..+ -...+..|++|+.|++..|.++.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~------~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR------PEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc------CchhHHHHHHHHhCCcceeeecccchhhh
Confidence 3445555555554443222 2344445555555554421 1111 11244578888888887776643
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.80 E-value=0.0084 Score=57.43 Aligned_cols=83 Identities=23% Similarity=0.305 Sum_probs=56.6
Q ss_pred ccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCC-CCc--ccchhhhcCCCCcEEEccccccccCCC-----CC
Q 017394 16 LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGN-NFV--TLLASIYRLSSLRGIKLEECKMLQNLP-----RL 87 (372)
Q Consensus 16 i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N-~l~--~lP~~i~~L~~L~~L~L~~n~~l~~lP-----~l 87 (372)
++.+.+|+.|.|.++.+. ..|-..|..=.+|+.|||+.+ .|+ .+-.-+..++.|..|+|+-|-..+..- .+
T Consensus 206 Ls~C~kLk~lSlEg~~Ld-D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi 284 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLD-DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI 284 (419)
T ss_pred HHHHHhhhhccccccccC-cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence 456677888888888886 567777777888888888875 466 344456788888888888887544321 12
Q ss_pred CcccccccccCC
Q 017394 88 PARIQGISLDGC 99 (372)
Q Consensus 88 p~~l~~L~~~~c 99 (372)
...+..|++++|
T Consensus 285 se~l~~LNlsG~ 296 (419)
T KOG2120|consen 285 SETLTQLNLSGY 296 (419)
T ss_pred chhhhhhhhhhh
Confidence 344555666554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.14 E-value=0.018 Score=54.66 Aligned_cols=66 Identities=23% Similarity=0.199 Sum_probs=54.6
Q ss_pred ccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch--hhhcCCCCcEEEccccccccCC
Q 017394 16 LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA--SIYRLSSLRGIKLEECKMLQNL 84 (372)
Q Consensus 16 i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~--~i~~L~~L~~L~L~~n~~l~~l 84 (372)
...|+.|++|.||-|.++. -..+..+++|+.|+|..|.|..|-. -+.+|++|+.|.|..|..-+.-
T Consensus 37 c~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEA 104 (388)
T ss_pred HHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccccc
Confidence 3478999999999999972 3347888999999999999987763 5789999999999999866543
No 66
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.78 E-value=0.14 Score=55.29 Aligned_cols=61 Identities=25% Similarity=0.378 Sum_probs=46.1
Q ss_pred cCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc--hhhhcCCCCcEEEcccccc
Q 017394 17 SGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL--ASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 17 ~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP--~~i~~L~~L~~L~L~~n~~ 80 (372)
.++++|..||+|+++++. + ..+++|++|+.|-+.+=.|..-+ ..+..|++|++||+|.-+.
T Consensus 170 ~sFpNL~sLDIS~TnI~n--l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISN--L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred hccCccceeecCCCCccC--c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 468889999999999863 4 66888888888877776666444 3567788888888877653
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=90.44 E-value=0.047 Score=53.23 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=69.9
Q ss_pred cccCCCCCCc----CCccccCCCCCCEEeecCCCCCC-C--CCCcccCCCCCCCEEeccCCCCcc-----cchhh-hcCC
Q 017394 2 PWSSDPVALS----LSSSLSGLCSLTKLDISYCDLGE-G--AIPSSIGDLCSLEELHLSGNNFVT-----LLASI-YRLS 68 (372)
Q Consensus 2 ~Ls~N~i~~~----lP~si~~L~~L~~L~Ls~n~l~~-~--~lP~~i~~L~~L~~L~Ls~N~l~~-----lP~~i-~~L~ 68 (372)
.+++|.|... +-..+..+++|++|||.+|.++. | .+...+..+++|+.|++++|.+.. +-..+ ...+
T Consensus 191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p 270 (382)
T KOG1909|consen 191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP 270 (382)
T ss_pred EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence 3556665422 23456788999999999998852 1 134457778899999999998872 22222 3468
Q ss_pred CCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccC
Q 017394 69 SLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLN 112 (372)
Q Consensus 69 ~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l 112 (372)
+|+.|.|.+|.+...-- ..-...+..-+.|+.|.+..|.+
T Consensus 271 ~L~vl~l~gNeIt~da~----~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 271 SLEVLELAGNEITRDAA----LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCceeccCcchhHHHHH----HHHHHHHhcchhhHHhcCCcccc
Confidence 99999999998543100 00011222467788888888887
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.95 E-value=1.9 Score=35.17 Aligned_cols=59 Identities=14% Similarity=0.267 Sum_probs=29.0
Q ss_pred cccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccc
Q 017394 15 SLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEE 77 (372)
Q Consensus 15 si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~ 77 (372)
.|.+.++|+.+.+.. .+. .|+. .+..+++|+.+.+..+ +..++. .+..+.+|+.+.+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~--~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK--KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHhCCCCCCEEEECC-Cee--EeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 355666777777764 342 2443 3666667777777664 666663 455665677777754
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.34 E-value=0.76 Score=43.88 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=61.0
Q ss_pred cccCCCCCCcCCcccc----CCCCCCEEeecCCCCCCCCCCcc-c-------------CCCCCCCEEeccCCCCcccchh
Q 017394 2 PWSSDPVALSLSSSLS----GLCSLTKLDISYCDLGEGAIPSS-I-------------GDLCSLEELHLSGNNFVTLLAS 63 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~----~L~~L~~L~Ls~n~l~~~~lP~~-i-------------~~L~~L~~L~Ls~N~l~~lP~~ 63 (372)
+||.|.+....|+.+. +-+.|..|.|++|.+ |.+... | ..-+.|+..+...|.|..-|..
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl--Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL--GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCCC--CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH
Confidence 5666776666665433 345666777777766 444321 2 2345666777777766654432
Q ss_pred -----hhcCCCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 64 -----IYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 64 -----i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+..-..|+.+.+..|.+- |+--..+-.+.+..|.+|+.|++..|.++.
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 112235666666666421 221112233456688899999998887654
No 70
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.51 E-value=0.59 Score=28.12 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=12.3
Q ss_pred CCCEEeccCCCCcccch
Q 017394 46 SLEELHLSGNNFVTLLA 62 (372)
Q Consensus 46 ~L~~L~Ls~N~l~~lP~ 62 (372)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777774
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.46 E-value=0.052 Score=52.18 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=57.2
Q ss_pred CCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccccccCCCCCCcccccccccCC
Q 017394 21 SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGC 99 (372)
Q Consensus 21 ~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c 99 (372)
.|+.|||++-.++...+-.-+..+.+|+.|-|.|+.+. .+-..|.+=.+|+.|+|+.|.-.. .+--.|-+.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t------~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT------ENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc------hhHHHHHHHhh
Confidence 47788888877753334444566778888888888888 677778888888888888886322 12122445678
Q ss_pred cccccccCcCc
Q 017394 100 VSLETLSDVLN 110 (372)
Q Consensus 100 ~sL~~l~~~~n 110 (372)
+.|..|.++-.
T Consensus 260 s~L~~LNlsWc 270 (419)
T KOG2120|consen 260 SRLDELNLSWC 270 (419)
T ss_pred hhHhhcCchHh
Confidence 88887776644
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=81.25 E-value=0.44 Score=45.43 Aligned_cols=112 Identities=17% Similarity=0.147 Sum_probs=65.4
Q ss_pred CcccCCCCCCcCC----ccccCCCCCCEEeecCCCCC--CCCCCc-------ccCCCCCCCEEeccCCCCc-ccch----
Q 017394 1 MPWSSDPVALSLS----SSLSGLCSLTKLDISYCDLG--EGAIPS-------SIGDLCSLEELHLSGNNFV-TLLA---- 62 (372)
Q Consensus 1 L~Ls~N~i~~~lP----~si~~L~~L~~L~Ls~n~l~--~~~lP~-------~i~~L~~L~~L~Ls~N~l~-~lP~---- 62 (372)
++||+|.|...-- ..|.+-.+|+..++++--.. ...+|. .+-+++.|+..+||.|-|. ..|.
T Consensus 35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d 114 (388)
T COG5238 35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGD 114 (388)
T ss_pred EeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHH
Confidence 4677777765422 23444566666666654221 012333 3456788999999999887 5554
Q ss_pred hhhcCCCCcEEEccccccccCCCC--CCcccccc----cccCCcccccccCcCccCC
Q 017394 63 SIYRLSSLRGIKLEECKMLQNLPR--LPARIQGI----SLDGCVSLETLSDVLNLNE 113 (372)
Q Consensus 63 ~i~~L~~L~~L~L~~n~~l~~lP~--lp~~l~~L----~~~~c~sL~~l~~~~n~l~ 113 (372)
-|.+-+.|.+|.|++|- +|.+-. +-..+..| .+.+=+.|+++....|++.
T Consensus 115 ~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 115 LISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred HHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 35666788999998886 342211 11112222 3345677788877777664
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.12 E-value=0.046 Score=50.83 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=66.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|||++|.+.. +-..++.+..|..|+++.|.+ ..+|.+++.+..+..+++..|+.+.+|.+++.+++++++++..+.+
T Consensus 47 ld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~--~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 47 LDLSSNRLVN-LGKNFSILTRLVRLDLSKNQI--KFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ehhhhhHHHh-hccchHHHHHHHHHhccHhhH--hhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 5778887643 334567788899999999998 5699999999999999999999999999999999999999998875
Q ss_pred c
Q 017394 81 L 81 (372)
Q Consensus 81 l 81 (372)
.
T Consensus 124 ~ 124 (326)
T KOG0473|consen 124 F 124 (326)
T ss_pred h
Confidence 3
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.60 E-value=1.5 Score=25.68 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=17.1
Q ss_pred CCCCCEEeecCCCCCCCCCCccc
Q 017394 19 LCSLTKLDISYCDLGEGAIPSSI 41 (372)
Q Consensus 19 L~~L~~L~Ls~n~l~~~~lP~~i 41 (372)
|++|+.|+|++|++. .+|...
T Consensus 1 L~~L~~L~L~~N~l~--~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLS--SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCC--cCCHHH
Confidence 578999999999995 488753
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.60 E-value=1.5 Score=25.68 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=17.1
Q ss_pred CCCCCEEeecCCCCCCCCCCccc
Q 017394 19 LCSLTKLDISYCDLGEGAIPSSI 41 (372)
Q Consensus 19 L~~L~~L~Ls~n~l~~~~lP~~i 41 (372)
|++|+.|+|++|++. .+|...
T Consensus 1 L~~L~~L~L~~N~l~--~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLS--SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCC--cCCHHH
Confidence 578999999999995 488753
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.35 E-value=2.2 Score=25.65 Aligned_cols=16 Identities=44% Similarity=0.584 Sum_probs=9.4
Q ss_pred CCCCEEeccCCCCccc
Q 017394 45 CSLEELHLSGNNFVTL 60 (372)
Q Consensus 45 ~~L~~L~Ls~N~l~~l 60 (372)
++|+.|+|+.|+++.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665533
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=72.59 E-value=7.8 Score=31.37 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=31.4
Q ss_pred ccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccc
Q 017394 14 SSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEE 77 (372)
Q Consensus 14 ~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~ 77 (372)
..|.++++|+.+.+..+ +. .++. .+.++++|+.+.+.. .+..++. .+..+++|+.+.+..
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred hhccccccccccccccc-cc--ccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 34566667777777664 42 2443 356666777777754 5555553 455577777777754
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=69.50 E-value=1.5 Score=43.97 Aligned_cols=62 Identities=29% Similarity=0.308 Sum_probs=27.6
Q ss_pred cCCCCCCEEeecCC-CCCCCCCC----cccCCCCCCCEEeccCCC-Cc--ccchhhhcCCCCcEEEccccc
Q 017394 17 SGLCSLTKLDISYC-DLGEGAIP----SSIGDLCSLEELHLSGNN-FV--TLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 17 ~~L~~L~~L~Ls~n-~l~~~~lP----~~i~~L~~L~~L~Ls~N~-l~--~lP~~i~~L~~L~~L~L~~n~ 79 (372)
..++.|+.|++++| ... ...+ .....+.+|+.|+++++. ++ .+-.-...+++|+.|.+.+|.
T Consensus 211 ~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLI-TLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred hhCchhheecccCccccc-ccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 34556666666652 111 1111 122334556666666555 33 111111225566666655554
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.86 E-value=2.3 Score=24.48 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=5.5
Q ss_pred CCCCEEeccCCCCc
Q 017394 45 CSLEELHLSGNNFV 58 (372)
Q Consensus 45 ~~L~~L~Ls~N~l~ 58 (372)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444555544443
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.09 E-value=1.1 Score=40.82 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=32.0
Q ss_pred CCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCC-Cc--ccchhhh-cCCCCcEEEcccccc
Q 017394 21 SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNN-FV--TLLASIY-RLSSLRGIKLEECKM 80 (372)
Q Consensus 21 ~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~-l~--~lP~~i~-~L~~L~~L~L~~n~~ 80 (372)
.++.+|.+++.+. .+=-..+.++++++.|.+.+++ |. .|- -++ -.++|+.|+|++|..
T Consensus 102 ~IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~r 163 (221)
T KOG3864|consen 102 KIEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCPR 163 (221)
T ss_pred eEEEEecCCchHH-HHHHHHHhccchhhhheeccccchhhHHHH-HhcccccchheeeccCCCe
Confidence 4667777777764 2212235556666666665553 11 111 111 346788888888864
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=58.15 E-value=2 Score=43.09 Aligned_cols=66 Identities=30% Similarity=0.371 Sum_probs=44.1
Q ss_pred ccCCCCCCEEeecCCC-CCCCCCCcccCCCCCCCEEeccCCC-Cc--ccchhhhcCCCCcEEEccccccc
Q 017394 16 LSGLCSLTKLDISYCD-LGEGAIPSSIGDLCSLEELHLSGNN-FV--TLLASIYRLSSLRGIKLEECKML 81 (372)
Q Consensus 16 i~~L~~L~~L~Ls~n~-l~~~~lP~~i~~L~~L~~L~Ls~N~-l~--~lP~~i~~L~~L~~L~L~~n~~l 81 (372)
...+++|+.|+|+.+. +++..+..--..+++|+.|.+.++. ++ .+-.-...++.|+.|+|+.|..+
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3456888999999988 5421222212236789999877776 45 44444567788999999988754
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.34 E-value=9.2 Score=23.02 Aligned_cols=14 Identities=50% Similarity=0.510 Sum_probs=8.6
Q ss_pred CCCCEEeccCCCCc
Q 017394 45 CSLEELHLSGNNFV 58 (372)
Q Consensus 45 ~~L~~L~Ls~N~l~ 58 (372)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 83
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=55.63 E-value=2.8 Score=25.54 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=10.7
Q ss_pred CCCCCC-CCCccccccc
Q 017394 355 GCCNDE-EEPQPKRFRQ 370 (372)
Q Consensus 355 ~~~~~~-~~~~~~~~~~ 370 (372)
.||||| +.++.+|+||
T Consensus 2 FGSddEeed~ea~r~re 18 (28)
T PF10587_consen 2 FGSDDEEEDEEAERIRE 18 (28)
T ss_pred CCCccccccHHHHHHHH
Confidence 356666 6677777765
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.99 E-value=8.5 Score=40.10 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=11.8
Q ss_pred CccCCCceeeeEEEEEecCC
Q 017394 185 TYKNSKLVGYAACCVFRIPK 204 (372)
Q Consensus 185 ~~~~~~~~gfa~C~v~~~~~ 204 (372)
|++..+.+||.+--||.-.+
T Consensus 440 ~~~~~~~l~ftv~G~f~d~~ 459 (585)
T KOG3763|consen 440 WYQTGNLLGFTVAGVFRDGE 459 (585)
T ss_pred eecccceEEEEEEEEeecCC
Confidence 44445566777766666443
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=34.35 E-value=28 Score=20.30 Aligned_cols=12 Identities=33% Similarity=0.764 Sum_probs=8.2
Q ss_pred CCCcEEEccccc
Q 017394 68 SSLRGIKLEECK 79 (372)
Q Consensus 68 ~~L~~L~L~~n~ 79 (372)
++|+.|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567777777775
No 86
>PF03522 KCl_Cotrans_1: K-Cl Co-transporter type 1 (KCC1); InterPro: IPR018491 The K-Cl co-transporter (KCC) mediates the coupled movement of K+ and Cl- ions across the plasma membrane of many animal cells. This transport is involved in the regulatory volume decrease in response to cell swelling in red blood cells, and has been proposed to play a role in the vectorial movement of Cl- across kidney epithelia. The transport process involves one for one electroneutral movement of K+ together with Cl-, and, in all known mammalian cells, the net movement is outward []. In neurones, it appears to play a unique role in maintaining low intracellular Cl-concentration, which is required for the functioning of Cl- dependent fast synaptic inhibition, mediated by certain neurotransmitters, such as gamma-aminobutyric acid (GABA) and glycine. Three isoforms of the K-Cl co-transporter have been described, termed KCC1 KCC2, and KCC3, containing 1085, 1116 and 1150 amino acids, respectively. They are predicted to have 12 transmembrane (TM) regions in a central hydrophobic domain, together with hydrophilic N- and C-termini that are likely cytoplasmic. Comparison of their sequences with those of other ion-tranporting membrane proteins reveals that they are part of a new superfamily of cation-chloride co-transporters, which includes the Na-Cl and Na-K-2Cl co-transporters. KCC1 and KCC3 are widely expressed in human tissues, while KCC2 is are expressed only in brain neurones, making it likely that this is the isoform responsible for maintaining low Cl- concentration in neurones [, , ]. KCC1 is widely expressed in human tissues, and when heterologously expressed, possesses the functional characteristics of the well-studied red blood cell K-Cl co-transporter, including stimulation by both swelling and N-ethylmaleimide. Several splice variants have also been identified. KCC3 is widely expressed in human tissues and, like KCC1, is stimulated by both swelling and N-ethylmaleimide. The induction of KCC3 is up-regulated by vascular endothelial growth factor and down-regulated by tumour necrosis factor. Defects in KCC3 are linked to agenesis of the corpus callosum with peripheral neuropathy []. This disorder is characterised by severe progressive sensorimotor neuropathy, mental retardation, dysmorphic features and complete or partial agenesis of the corpus callosum.; GO: 0005215 transporter activity, 0006811 ion transport, 0016020 membrane
Probab=29.27 E-value=27 Score=21.56 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=12.1
Q ss_pred cCCCCCCCCCCCCcccccc
Q 017394 351 ASGSGCCNDEEEPQPKRFR 369 (372)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~ 369 (372)
.=+|-.||+|+|+.+...|
T Consensus 9 rl~SlySDeeeE~~~~~ek 27 (30)
T PF03522_consen 9 RLESLYSDEEEETETEPEK 27 (30)
T ss_pred eeeccccCcccccccchhh
Confidence 3456678888877655443
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.22 E-value=24 Score=32.30 Aligned_cols=61 Identities=21% Similarity=0.424 Sum_probs=42.1
Q ss_pred CCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccccc-----cCCCCCCcccccccccCCcccccc
Q 017394 45 CSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECKML-----QNLPRLPARIQGISLDGCVSLETL 105 (372)
Q Consensus 45 ~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~~l-----~~lP~lp~~l~~L~~~~c~sL~~l 105 (372)
..++.+|-++..+...- ..+..+++|+.|.+.+|+-+ +.+-.+.++|+.|++++|+..+.-
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 34677888877766332 46778888999999999732 234446677888888888765543
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.65 E-value=52 Score=40.86 Aligned_cols=31 Identities=42% Similarity=0.685 Sum_probs=25.3
Q ss_pred eecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCc
Q 017394 26 DISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFV 58 (372)
Q Consensus 26 ~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~ 58 (372)
||++|+|+ .||. .|..|++|+.|+|++|.|.
T Consensus 1 DLSnN~Ls--tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS--TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC--ccChHHhccCCCceEEEeeCCccc
Confidence 68899996 3666 4778999999999999877
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.76 E-value=56 Score=40.62 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=29.2
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCC
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLG 33 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~ 33 (372)
||++|+|...-+..|..|++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 79999999888888999999999999999874
Done!