Query 017394
Match_columns 372
No_of_seqs 341 out of 2733
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:42:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.6 3.2E-15 1.1E-19 159.5 13.6 177 1-184 471-723 (768)
2 4fcg_A Uncharacterized protein 99.5 2.2E-14 7.7E-19 138.0 8.1 110 1-113 86-196 (328)
3 4fcg_A Uncharacterized protein 99.5 3.2E-14 1.1E-18 136.9 8.1 76 1-79 109-194 (328)
4 1ogq_A PGIP-2, polygalacturona 99.5 1.8E-14 6.1E-19 137.6 5.8 85 1-86 55-143 (313)
5 1ogq_A PGIP-2, polygalacturona 99.5 2.4E-14 8.3E-19 136.7 6.5 85 1-86 81-167 (313)
6 3rgz_A Protein brassinosteroid 99.5 6.5E-14 2.2E-18 149.4 9.0 162 1-172 495-734 (768)
7 4eco_A Uncharacterized protein 99.4 1.1E-13 3.8E-18 144.7 2.6 104 1-114 86-288 (636)
8 2v9t_B SLIT homolog 2 protein 99.3 4.3E-12 1.5E-16 115.1 10.6 107 1-116 37-144 (220)
9 1ozn_A Reticulon 4 receptor; N 99.3 1.5E-12 5E-17 121.9 7.2 80 2-82 38-119 (285)
10 3e6j_A Variable lymphocyte rec 99.3 7.2E-12 2.5E-16 114.2 11.6 104 1-115 45-150 (229)
11 4b8c_D Glucose-repressible alc 99.3 1.6E-12 5.3E-17 138.3 7.9 90 13-113 217-306 (727)
12 2o6s_A Variable lymphocyte rec 99.3 1.7E-11 5.7E-16 109.4 12.9 105 1-114 33-138 (208)
13 2v70_A SLIT-2, SLIT homolog 2 99.3 3E-12 1E-16 116.1 7.9 105 1-114 37-143 (220)
14 4g8a_A TOLL-like receptor 4; l 99.3 5.9E-12 2E-16 129.2 10.4 105 1-114 57-162 (635)
15 4ecn_A Leucine-rich repeat pro 99.3 9.4E-13 3.2E-17 142.4 4.4 85 1-86 328-509 (876)
16 3v47_A TOLL-like receptor 5B a 99.3 7.7E-12 2.6E-16 124.2 9.6 80 2-82 85-168 (455)
17 3m19_A Variable lymphocyte rec 99.3 2.8E-11 9.7E-16 111.3 12.4 105 1-114 40-145 (251)
18 1w8a_A SLIT protein; signaling 99.3 1.2E-11 4E-16 109.7 9.4 79 2-81 35-115 (192)
19 2z62_A TOLL-like receptor 4, v 99.3 2.9E-11 1E-15 112.5 12.3 105 1-114 33-138 (276)
20 1p9a_G Platelet glycoprotein I 99.3 2.2E-11 7.6E-16 115.0 11.4 103 1-114 36-138 (290)
21 2r9u_A Variable lymphocyte rec 99.3 3.4E-11 1.1E-15 105.4 11.6 102 1-114 17-119 (174)
22 4eco_A Uncharacterized protein 99.2 4E-12 1.4E-16 132.9 6.3 109 1-117 211-347 (636)
23 3e6j_A Variable lymphocyte rec 99.2 2.6E-11 8.9E-16 110.5 11.0 105 1-114 69-173 (229)
24 3rfs_A Internalin B, repeat mo 99.2 4E-11 1.4E-15 111.8 12.3 103 1-114 68-171 (272)
25 2je0_A Acidic leucine-rich nuc 99.2 9.8E-12 3.3E-16 105.1 7.0 104 1-114 22-127 (149)
26 2o6s_A Variable lymphocyte rec 99.2 1.4E-11 4.9E-16 109.9 8.4 105 1-114 57-162 (208)
27 1ozn_A Reticulon 4 receptor; N 99.2 7.8E-11 2.7E-15 110.1 13.7 102 2-114 17-119 (285)
28 2v70_A SLIT-2, SLIT homolog 2 99.2 2E-11 6.8E-16 110.6 9.2 105 1-114 62-167 (220)
29 3zyj_A Leucine-rich repeat-con 99.2 2.2E-11 7.6E-16 121.2 10.3 112 1-114 69-199 (440)
30 2o6r_A Variable lymphocyte rec 99.2 8E-11 2.7E-15 102.4 12.6 77 2-79 34-111 (177)
31 3zyi_A Leucine-rich repeat-con 99.2 1.4E-11 4.9E-16 123.0 8.7 178 1-185 80-285 (452)
32 2ell_A Acidic leucine-rich nuc 99.2 1.9E-11 6.5E-16 105.4 8.2 105 1-115 29-135 (168)
33 3oja_B Anopheles plasmodium-re 99.2 2.9E-11 1E-15 125.2 11.1 84 1-85 80-164 (597)
34 1w8a_A SLIT protein; signaling 99.2 9.2E-12 3.2E-16 110.4 6.2 104 1-117 13-119 (192)
35 3g39_A Variable lymphocyte rec 99.2 7.5E-11 2.6E-15 102.6 11.6 102 1-114 14-116 (170)
36 3vq2_A TLR4, TOLL-like recepto 99.2 3.7E-11 1.3E-15 123.7 11.0 147 1-159 37-198 (606)
37 3zyi_A Leucine-rich repeat-con 99.2 3.1E-11 1.1E-15 120.5 9.9 151 1-156 104-280 (452)
38 3zyj_A Leucine-rich repeat-con 99.2 2.5E-11 8.5E-16 120.8 8.9 113 1-115 93-222 (440)
39 1dce_A Protein (RAB geranylger 99.2 2.7E-11 9.1E-16 125.3 9.1 105 1-117 446-550 (567)
40 3bz5_A Internalin-J, INLJ; leu 99.2 4.4E-11 1.5E-15 120.2 10.5 165 1-186 196-395 (457)
41 2z63_A TOLL-like receptor 4, v 99.2 6.4E-11 2.2E-15 120.7 11.8 147 1-160 33-195 (570)
42 3rfs_A Internalin B, repeat mo 99.2 3.8E-11 1.3E-15 111.9 9.2 108 1-117 90-198 (272)
43 1wwl_A Monocyte differentiatio 99.2 1.4E-11 4.8E-16 117.1 6.1 103 1-112 68-185 (312)
44 4ecn_A Leucine-rich repeat pro 99.2 1.6E-11 5.5E-16 132.8 7.2 105 1-113 453-586 (876)
45 3m19_A Variable lymphocyte rec 99.2 9.7E-11 3.3E-15 107.7 11.4 107 1-116 64-171 (251)
46 3v47_A TOLL-like receptor 5B a 99.2 5.3E-11 1.8E-15 118.1 10.3 132 1-159 280-412 (455)
47 2o6q_A Variable lymphocyte rec 99.2 8.6E-11 2.9E-15 109.3 11.0 104 1-114 42-147 (270)
48 3t6q_A CD180 antigen; protein- 99.2 5.6E-11 1.9E-15 122.4 10.6 150 1-161 38-198 (606)
49 2ft3_A Biglycan; proteoglycan, 99.2 1.3E-10 4.6E-15 111.0 12.5 78 1-81 59-136 (332)
50 2id5_A Lingo-1, leucine rich r 99.2 3.5E-11 1.2E-15 120.6 8.7 84 1-85 37-121 (477)
51 3o6n_A APL1; leucine-rich repe 99.2 8.1E-11 2.8E-15 114.9 11.1 82 1-83 74-156 (390)
52 2wfh_A SLIT homolog 2 protein 99.2 9E-11 3.1E-15 104.3 10.0 100 2-114 16-116 (193)
53 4b8c_D Glucose-repressible alc 99.2 1.1E-11 3.8E-16 131.7 4.7 102 1-114 229-330 (727)
54 2v9t_B SLIT homolog 2 protein 99.2 8.5E-11 2.9E-15 106.4 10.0 104 1-114 61-166 (220)
55 2z66_A Variable lymphocyte rec 99.2 1.3E-11 4.3E-16 116.6 4.5 105 1-114 106-213 (306)
56 2z81_A CD282 antigen, TOLL-lik 99.2 1.7E-11 6E-16 124.5 5.8 76 2-79 340-421 (549)
57 2xot_A Amphoterin-induced prot 99.2 8.6E-11 2.9E-15 114.2 10.4 105 1-114 44-150 (361)
58 3j0a_A TOLL-like receptor 5; m 99.2 5E-11 1.7E-15 128.4 9.5 107 1-114 29-137 (844)
59 2ft3_A Biglycan; proteoglycan, 99.2 1.1E-10 3.8E-15 111.6 10.8 107 2-113 39-160 (332)
60 2z66_A Variable lymphocyte rec 99.2 6.8E-11 2.3E-15 111.5 9.2 104 1-115 83-190 (306)
61 1xku_A Decorin; proteoglycan, 99.1 9.9E-11 3.4E-15 111.7 10.1 77 1-80 57-133 (330)
62 1ziw_A TOLL-like receptor 3; i 99.1 8.4E-11 2.9E-15 122.8 10.1 148 1-160 30-189 (680)
63 2z81_A CD282 antigen, TOLL-lik 99.1 5.6E-11 1.9E-15 120.8 8.5 104 1-112 31-135 (549)
64 4glp_A Monocyte differentiatio 99.1 1.4E-10 4.9E-15 109.9 10.7 81 1-82 96-183 (310)
65 3oja_B Anopheles plasmodium-re 99.1 5.8E-11 2E-15 123.0 8.4 80 1-82 104-185 (597)
66 1wwl_A Monocyte differentiatio 99.1 4.2E-11 1.4E-15 113.9 6.2 108 1-114 100-215 (312)
67 2xwt_C Thyrotropin receptor; s 99.1 5.4E-11 1.9E-15 108.4 6.6 83 1-86 36-122 (239)
68 3oja_A Leucine-rich immune mol 99.1 5.1E-11 1.7E-15 120.7 7.0 75 1-82 39-113 (487)
69 3vq2_A TLR4, TOLL-like recepto 99.1 1.9E-11 6.4E-16 125.9 3.7 170 1-183 381-563 (606)
70 2ell_A Acidic leucine-rich nuc 99.1 5.4E-11 1.8E-15 102.5 5.8 106 1-114 54-161 (168)
71 2z62_A TOLL-like receptor 4, v 99.1 2E-10 6.7E-15 106.8 9.8 79 1-80 57-136 (276)
72 2z80_A TOLL-like receptor 2, v 99.1 1.1E-10 3.7E-15 112.6 8.3 102 1-110 57-159 (353)
73 2o6q_A Variable lymphocyte rec 99.1 4.7E-10 1.6E-14 104.3 12.3 80 1-81 66-146 (270)
74 4ezg_A Putative uncharacterize 99.1 7.7E-11 2.6E-15 104.5 6.4 102 1-114 71-173 (197)
75 3cvr_A Invasion plasmid antige 99.1 1.7E-10 5.7E-15 119.4 9.9 101 1-113 64-173 (571)
76 2z7x_B TOLL-like receptor 1, v 99.1 5.5E-11 1.9E-15 120.3 6.1 76 1-80 5-81 (520)
77 3g39_A Variable lymphocyte rec 99.1 1.8E-10 6.1E-15 100.2 8.5 81 1-82 35-116 (170)
78 4glp_A Monocyte differentiatio 99.1 8.4E-11 2.9E-15 111.5 6.9 111 1-117 122-241 (310)
79 2r9u_A Variable lymphocyte rec 99.1 1.9E-10 6.4E-15 100.6 8.6 79 1-81 38-118 (174)
80 2z7x_B TOLL-like receptor 1, v 99.1 1.1E-10 3.7E-15 118.2 7.9 81 2-85 308-391 (520)
81 4ezg_A Putative uncharacterize 99.1 2.4E-10 8.3E-15 101.3 9.2 98 1-111 49-147 (197)
82 2z80_A TOLL-like receptor 2, v 99.1 7.1E-11 2.4E-15 113.9 6.1 108 1-117 81-191 (353)
83 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.3E-10 4.3E-15 119.2 8.2 103 1-113 57-159 (562)
84 4g8a_A TOLL-like receptor 4; l 99.1 1.6E-10 5.6E-15 118.4 8.9 105 1-114 81-187 (635)
85 3o6n_A APL1; leucine-rich repe 99.1 1.7E-10 5.7E-15 112.7 8.3 80 1-82 98-179 (390)
86 3t6q_A CD180 antigen; protein- 99.1 1.1E-10 3.7E-15 120.2 7.2 82 1-83 355-440 (606)
87 2je0_A Acidic leucine-rich nuc 99.1 5.2E-11 1.8E-15 100.6 3.9 100 1-108 47-148 (149)
88 1xku_A Decorin; proteoglycan, 99.1 4.2E-10 1.4E-14 107.3 10.4 154 1-168 81-260 (330)
89 2xot_A Amphoterin-induced prot 99.1 2.4E-10 8.1E-15 111.0 8.4 108 1-114 69-177 (361)
90 3cvr_A Invasion plasmid antige 99.1 3.1E-10 1.1E-14 117.3 9.5 100 1-113 85-193 (571)
91 1p9a_G Platelet glycoprotein I 99.0 6.9E-10 2.4E-14 104.7 10.7 104 1-114 82-186 (290)
92 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 1.2E-10 4.2E-15 119.3 5.9 81 2-85 337-420 (562)
93 1dce_A Protein (RAB geranylger 99.0 3.3E-10 1.1E-14 117.1 7.8 81 1-85 468-550 (567)
94 3o53_A Protein LRIM1, AGAP0063 99.0 1.8E-10 6.3E-15 109.6 5.5 95 2-114 40-134 (317)
95 2o6r_A Variable lymphocyte rec 99.0 1.6E-09 5.4E-14 94.1 11.1 102 1-114 12-114 (177)
96 1a9n_A U2A', U2A'; complex (nu 99.0 3.5E-10 1.2E-14 98.4 6.4 102 1-114 24-127 (176)
97 2z63_A TOLL-like receptor 4, v 99.0 1.9E-10 6.5E-15 117.2 5.2 104 1-114 378-484 (570)
98 1a9n_A U2A', U2A'; complex (nu 99.0 2.9E-10 1E-14 98.9 5.5 103 1-112 47-152 (176)
99 1h6u_A Internalin H; cell adhe 99.0 1.3E-09 4.6E-14 103.5 10.1 74 1-80 46-119 (308)
100 1ziw_A TOLL-like receptor 3; i 99.0 2.3E-09 7.8E-14 111.9 12.7 80 1-80 435-516 (680)
101 1jl5_A Outer protein YOPM; leu 99.0 2.4E-09 8.3E-14 107.4 12.2 105 1-114 136-251 (454)
102 2id5_A Lingo-1, leucine rich r 99.0 1.4E-09 4.9E-14 108.7 9.9 112 1-114 61-190 (477)
103 3j0a_A TOLL-like receptor 5; m 99.0 1.6E-09 5.6E-14 116.6 10.9 78 1-79 295-373 (844)
104 2ifg_A High affinity nerve gro 99.0 1.7E-09 5.7E-14 103.9 9.7 101 2-114 14-117 (347)
105 2wfh_A SLIT homolog 2 protein 99.0 1.3E-09 4.4E-14 96.8 8.1 104 1-114 36-140 (193)
106 3oja_A Leucine-rich immune mol 99.0 1.7E-10 5.7E-15 116.9 2.5 100 1-114 104-205 (487)
107 1jl5_A Outer protein YOPM; leu 98.9 2.8E-09 9.6E-14 107.0 11.4 105 1-114 178-291 (454)
108 3o53_A Protein LRIM1, AGAP0063 98.9 3.1E-10 1.1E-14 108.1 2.6 75 2-80 105-181 (317)
109 1m9s_A Internalin B; cell inva 98.9 5.1E-09 1.8E-13 109.0 11.2 75 1-81 48-122 (605)
110 1h6t_A Internalin B; cell adhe 98.9 4.3E-09 1.5E-13 99.2 9.6 98 1-114 51-148 (291)
111 1xeu_A Internalin C; cellular 98.9 2.2E-09 7.7E-14 99.7 7.0 78 2-86 25-102 (263)
112 3g06_A SSPH2 (leucine-rich rep 98.9 6.7E-09 2.3E-13 108.4 11.2 102 1-114 45-155 (622)
113 4fmz_A Internalin; leucine ric 98.9 7.4E-09 2.5E-13 99.0 10.5 72 2-79 50-121 (347)
114 2ifg_A High affinity nerve gro 98.9 2.4E-09 8.3E-14 102.7 7.0 80 1-81 36-116 (347)
115 1ds9_A Outer arm dynein; leuci 98.9 1.5E-11 5.3E-16 109.2 -8.2 101 1-114 23-129 (198)
116 2ast_B S-phase kinase-associat 98.8 2.3E-10 7.8E-15 108.9 -0.7 75 2-78 76-152 (336)
117 3g06_A SSPH2 (leucine-rich rep 98.8 4.6E-09 1.6E-13 109.7 9.1 104 1-114 66-195 (622)
118 1h6t_A Internalin B; cell adhe 98.8 9E-09 3.1E-13 97.0 10.1 98 1-114 73-170 (291)
119 1xeu_A Internalin C; cellular 98.8 1.4E-08 4.8E-13 94.3 10.4 97 1-114 46-142 (263)
120 1h6u_A Internalin H; cell adhe 98.8 1E-08 3.5E-13 97.3 9.5 98 1-114 90-187 (308)
121 1o6v_A Internalin A; bacterial 98.8 1.8E-08 6.1E-13 100.8 11.1 98 1-114 226-323 (466)
122 2ast_B S-phase kinase-associat 98.8 5.3E-10 1.8E-14 106.4 -0.4 110 1-111 98-233 (336)
123 4fmz_A Internalin; leucine ric 98.8 1.7E-08 5.9E-13 96.4 10.0 72 2-79 161-232 (347)
124 1o6v_A Internalin A; bacterial 98.8 1.4E-08 4.9E-13 101.5 9.7 107 1-114 73-191 (466)
125 3bz5_A Internalin-J, INLJ; leu 98.8 2.6E-08 8.8E-13 100.0 11.5 72 2-81 154-225 (457)
126 4ay9_X Follicle-stimulating ho 98.8 7.9E-09 2.7E-13 99.7 7.1 81 1-82 35-118 (350)
127 2xwt_C Thyrotropin receptor; s 98.8 8.4E-09 2.9E-13 93.8 6.4 104 1-113 60-169 (239)
128 1m9s_A Internalin B; cell inva 98.7 2.7E-08 9.3E-13 103.5 10.5 98 1-114 70-167 (605)
129 3goz_A Leucine-rich repeat-con 98.7 8E-09 2.7E-13 100.0 4.5 80 2-82 4-94 (362)
130 1ds9_A Outer arm dynein; leuci 98.7 2.2E-10 7.4E-15 101.7 -6.9 102 1-114 53-154 (198)
131 3goz_A Leucine-rich repeat-con 98.6 6.6E-09 2.2E-13 100.6 0.5 81 1-82 27-123 (362)
132 2ca6_A RAN GTPase-activating p 98.6 3.7E-09 1.3E-13 103.0 -1.5 81 1-81 37-135 (386)
133 2ca6_A RAN GTPase-activating p 98.5 2.9E-08 1E-12 96.6 1.7 111 1-114 164-288 (386)
134 1z7x_W Ribonuclease inhibitor; 98.4 6E-08 2E-12 96.0 1.0 79 1-80 204-296 (461)
135 4ay9_X Follicle-stimulating ho 98.3 7.6E-07 2.6E-11 85.7 6.7 102 2-106 134-240 (350)
136 3rw6_A Nuclear RNA export fact 98.1 8.4E-07 2.9E-11 83.0 1.4 66 18-85 168-237 (267)
137 1z7x_W Ribonuclease inhibitor; 98.0 8.7E-07 3E-11 87.6 -0.7 108 1-114 289-412 (461)
138 3rw6_A Nuclear RNA export fact 97.9 5E-06 1.7E-10 77.7 3.9 72 1-75 175-258 (267)
139 3un9_A NLR family member X1; l 97.9 7.7E-07 2.6E-11 87.0 -2.8 79 1-80 106-195 (372)
140 3sb4_A Hypothetical leucine ri 97.8 6.5E-05 2.2E-09 71.3 9.1 35 44-78 225-260 (329)
141 3ogk_B Coronatine-insensitive 97.7 4.4E-06 1.5E-10 85.2 0.4 61 18-79 162-231 (592)
142 3un9_A NLR family member X1; l 97.6 2.4E-06 8.3E-11 83.4 -3.4 108 1-113 77-196 (372)
143 3sb4_A Hypothetical leucine ri 97.5 0.00012 4E-09 69.5 6.5 97 19-130 225-324 (329)
144 3ogk_B Coronatine-insensitive 97.4 3.9E-05 1.3E-09 78.2 2.2 40 41-80 266-305 (592)
145 1io0_A Tropomodulin; LRR prote 97.4 1E-05 3.4E-10 71.0 -2.4 94 15-113 31-136 (185)
146 2p1m_B Transport inhibitor res 97.3 8.4E-06 2.9E-10 83.1 -5.1 61 18-79 103-167 (594)
147 3e4g_A ATP synthase subunit S, 97.1 0.00012 4.2E-09 64.0 1.7 69 11-80 52-126 (176)
148 2p1m_B Transport inhibitor res 97.0 0.00023 7.8E-09 72.4 2.3 79 1-79 110-195 (594)
149 3e4g_A ATP synthase subunit S, 97.0 0.00045 1.5E-08 60.4 3.9 90 37-130 53-153 (176)
150 1io0_A Tropomodulin; LRR prote 96.9 0.00017 5.7E-09 63.1 0.8 109 1-114 41-165 (185)
151 4fdw_A Leucine rich hypothetic 96.9 0.0018 6E-08 63.7 7.7 59 16-77 176-235 (401)
152 3rfe_A Platelet glycoprotein I 96.6 0.0034 1.2E-07 51.7 6.6 56 23-80 11-67 (130)
153 3rfe_A Platelet glycoprotein I 95.8 0.013 4.4E-07 48.2 5.5 53 2-58 14-68 (130)
154 4fdw_A Leucine rich hypothetic 95.7 0.028 9.6E-07 55.0 8.6 82 16-110 245-333 (401)
155 2ra8_A Uncharacterized protein 95.4 0.0027 9.2E-08 61.6 0.1 63 11-77 163-228 (362)
156 2ra8_A Uncharacterized protein 95.2 0.0035 1.2E-07 60.8 0.3 91 18-114 217-321 (362)
157 4h09_A Hypothetical leucine ri 93.1 0.27 9.3E-06 46.8 8.6 101 14-130 234-336 (379)
158 4gt6_A Cell surface protein; l 92.9 0.23 7.8E-06 47.8 7.8 99 15-130 260-360 (394)
159 4fs7_A Uncharacterized protein 92.8 0.16 5.4E-06 48.9 6.5 57 15-76 271-328 (394)
160 4h09_A Hypothetical leucine ri 91.9 0.47 1.6E-05 45.0 8.6 100 15-130 212-313 (379)
161 1pgv_A TMD-1, tropomodulin TMD 90.3 0.071 2.4E-06 47.1 0.9 64 17-80 38-110 (197)
162 4fs7_A Uncharacterized protein 89.7 0.53 1.8E-05 45.2 6.6 98 15-130 292-391 (394)
163 4gt6_A Cell surface protein; l 89.1 0.95 3.2E-05 43.4 7.9 84 15-111 283-368 (394)
164 1pgv_A TMD-1, tropomodulin TMD 86.9 0.42 1.4E-05 42.1 3.5 78 1-78 46-136 (197)
165 3ukw_C Bimax1 peptide; arm rep 69.0 1.2 4.3E-05 25.2 0.4 12 358-369 15-26 (28)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=3.2e-15 Score=159.51 Aligned_cols=177 Identities=20% Similarity=0.174 Sum_probs=124.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+.+|..+.++++|+.|+|++|++. +.+|..++.+++|++|+|++|+++ .+|..+..+++|++|+|++|+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 467777777777777777777777777777776 677777777777777888777777 777777788888888888887
Q ss_pred cccCCCCCCcccc---c-----------------------------------------------------------cccc
Q 017394 80 MLQNLPRLPARIQ---G-----------------------------------------------------------ISLD 97 (372)
Q Consensus 80 ~l~~lP~lp~~l~---~-----------------------------------------------------------L~~~ 97 (372)
+.+.+|.-..... . -.+.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 7776664211000 0 0123
Q ss_pred CCcccccccCcCccCCCCCCccccccc-------ccccccccchHHHHHHHHHhhcCCCCCCCceeecCCCCCCcccc--
Q 017394 98 GCVSLETLSDVLNLNEHQIPNIHVHCV-------DCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFE-- 168 (372)
Q Consensus 98 ~c~sL~~l~~~~n~l~~~~~~l~~~~~-------nc~kL~~~~~~~l~~l~~~l~~~~~~~~~~~~~lPg~~IP~wf~-- 168 (372)
++++|+.|+++.|.+++.+|.....+. ..+++.|.+|..+..|+. |+.++++.|.+++. ||..|.
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~-L~~LdLs~N~l~g~-----ip~~l~~l 703 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG-LNILDLSSNKLDGR-----IPQAMSAL 703 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCEEC-----CCGGGGGC
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC-CCEEECCCCcccCc-----CChHHhCC
Confidence 467888999999999887764221111 123445888988888876 88999999999984 454444
Q ss_pred ----cccCCCCeEEEecCCC
Q 017394 169 ----YQNNEGSSITISTPPK 184 (372)
Q Consensus 169 ----~~~~~g~slt~~Lp~~ 184 (372)
..+.++|.++|.+|..
T Consensus 704 ~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCCSEEECCSSEEEEECCSS
T ss_pred CCCCEEECcCCcccccCCCc
Confidence 3445789999999974
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.50 E-value=2.2e-14 Score=137.98 Aligned_cols=110 Identities=25% Similarity=0.343 Sum_probs=89.8
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+. .+|+.+.++++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+|..+..+++|++|+|++|+.
T Consensus 86 L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 86 LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp EEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETT
T ss_pred EEccCCCch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCC
Confidence 578999997 88889999999999999999995 599999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcccc-cccccCCcccccccCcCccCC
Q 017394 81 LQNLPRLPARIQ-GISLDGCVSLETLSDVLNLNE 113 (372)
Q Consensus 81 l~~lP~lp~~l~-~L~~~~c~sL~~l~~~~n~l~ 113 (372)
++.+|....... .-.+.++++|++|++..|.++
T Consensus 163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred ccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence 887775321100 001224666777777666655
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.49 E-value=3.2e-14 Score=136.88 Aligned_cols=76 Identities=24% Similarity=0.344 Sum_probs=40.0
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhc---------CCCC
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYR---------LSSL 70 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~---------L~~L 70 (372)
|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++.+++|++|+|++|++. .+|..+.. +++|
T Consensus 109 L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L 185 (328)
T 4fcg_A 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185 (328)
T ss_dssp EEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTC
T ss_pred EECCCCCcc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCC
Confidence 345555555 55555555555555555555553 35555555555555555554333 45544432 5555
Q ss_pred cEEEccccc
Q 017394 71 RGIKLEECK 79 (372)
Q Consensus 71 ~~L~L~~n~ 79 (372)
++|+|++|+
T Consensus 186 ~~L~L~~n~ 194 (328)
T 4fcg_A 186 QSLRLEWTG 194 (328)
T ss_dssp CEEEEEEEC
T ss_pred CEEECcCCC
Confidence 555555554
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.48 E-value=1.8e-14 Score=137.57 Aligned_cols=85 Identities=24% Similarity=0.281 Sum_probs=70.4
Q ss_pred CcccCCCCCC--cCCccccCCCCCCEEeecC-CCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcc
Q 017394 1 MPWSSDPVAL--SLSSSLSGLCSLTKLDISY-CDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLE 76 (372)
Q Consensus 1 L~Ls~N~i~~--~lP~si~~L~~L~~L~Ls~-n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~ 76 (372)
|+|++|.+.+ .+|+.+.++++|++|+|++ |++. +.+|..++.+++|++|+|++|+++ .+|..+..+++|++|+|+
T Consensus 55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred EECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc-ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence 5788888888 8888888888888888884 7776 778888888888888888888888 888888888888888888
Q ss_pred ccccccCCCC
Q 017394 77 ECKMLQNLPR 86 (372)
Q Consensus 77 ~n~~l~~lP~ 86 (372)
+|.+.+.+|.
T Consensus 134 ~N~l~~~~p~ 143 (313)
T 1ogq_A 134 YNALSGTLPP 143 (313)
T ss_dssp SSEEESCCCG
T ss_pred CCccCCcCCh
Confidence 8887665553
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.48 E-value=2.4e-14 Score=136.66 Aligned_cols=85 Identities=25% Similarity=0.373 Sum_probs=74.8
Q ss_pred CcccC-CCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcccc
Q 017394 1 MPWSS-DPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~-N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n 78 (372)
|+|++ |.+.+.+|..|.++++|++|+|++|.+. +.+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeC-CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 46774 8888899999999999999999999997 789999999999999999999999 88989999999999999999
Q ss_pred ccccCCCC
Q 017394 79 KMLQNLPR 86 (372)
Q Consensus 79 ~~l~~lP~ 86 (372)
++.+.+|.
T Consensus 160 ~l~~~~p~ 167 (313)
T 1ogq_A 160 RISGAIPD 167 (313)
T ss_dssp CCEEECCG
T ss_pred cccCcCCH
Confidence 87766664
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.46 E-value=6.5e-14 Score=149.40 Aligned_cols=162 Identities=22% Similarity=0.202 Sum_probs=127.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhh--------------
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIY-------------- 65 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~-------------- 65 (372)
|+|++|.+.+.+|..++.+++|+.|+|++|+++ +.+|..++.+++|++|+|++|.++ .+|..+.
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS-GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCccc-CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 579999999999999999999999999999998 889999999999999999999988 7776543
Q ss_pred --------------------------------------------------------cCCCCcEEEccccccccCCCCCCc
Q 017394 66 --------------------------------------------------------RLSSLRGIKLEECKMLQNLPRLPA 89 (372)
Q Consensus 66 --------------------------------------------------------~L~~L~~L~L~~n~~l~~lP~lp~ 89 (372)
.+++|++|+|++|++.+.+|.
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~--- 650 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK--- 650 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG---
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH---
Confidence 346788999999998886664
Q ss_pred ccccccccCCcccccccCcCccCCCCCCcccccccc-------cccccccchHHHHHHHHHhhcCCCCCCCceeecCCCC
Q 017394 90 RIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVD-------CLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVPGSE 162 (372)
Q Consensus 90 ~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~n-------c~kL~~~~~~~l~~l~~~l~~~~~~~~~~~~~lPg~~ 162 (372)
.+. ++++|+.|+++.|.+++.+|.....+.+ .+++.|.+|..+..|.. |+.++++.|.+++.+|...
T Consensus 651 ~l~-----~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~-L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 651 EIG-----SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM-LTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp GGG-----GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC-CSEEECCSSEEEEECCSSS
T ss_pred HHh-----ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC-CCEEECcCCcccccCCCch
Confidence 444 7788899999999988877653222221 23445788888877765 8889999999999888765
Q ss_pred CCcccccccC
Q 017394 163 IPEWFEYQNN 172 (372)
Q Consensus 163 IP~wf~~~~~ 172 (372)
....|...+.
T Consensus 725 ~~~~~~~~~~ 734 (768)
T 3rgz_A 725 QFETFPPAKF 734 (768)
T ss_dssp SGGGSCGGGG
T ss_pred hhccCCHHHh
Confidence 5555544433
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.37 E-value=1.1e-13 Score=144.65 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=86.0
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCC------------------------------------------------
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDL------------------------------------------------ 32 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l------------------------------------------------ 32 (372)
|+|++|++.|.+|+++++|++|+.|+|++|.+
T Consensus 86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l 165 (636)
T 4eco_A 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165 (636)
T ss_dssp EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHH
Confidence 57999999999999999999999999998843
Q ss_pred ------------------------------CCCCCCcccCCCCCCCEEeccCCCCcc------------------cchhh
Q 017394 33 ------------------------------GEGAIPSSIGDLCSLEELHLSGNNFVT------------------LLASI 64 (372)
Q Consensus 33 ------------------------------~~~~lP~~i~~L~~L~~L~Ls~N~l~~------------------lP~~i 64 (372)
+ + ||..++++++|++|+|++|.|+. +|..+
T Consensus 166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~-~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l 243 (636)
T 4eco_A 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNIT-F-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243 (636)
T ss_dssp HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE-E-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred hhcCccccccccccccchhhhhhccccCCCc-c-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence 2 3 88889999999999999999997 99999
Q ss_pred h--cCCCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCcc-CCC
Q 017394 65 Y--RLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNL-NEH 114 (372)
Q Consensus 65 ~--~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~-l~~ 114 (372)
+ ++++|++|+|++|.+.+.+|. .+. ++++|++|+++.|. +++
T Consensus 244 ~~~~l~~L~~L~L~~n~l~~~~p~---~l~-----~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 244 KWDNLKDLTDVEVYNCPNLTKLPT---FLK-----ALPEMQLINVACNRGISG 288 (636)
T ss_dssp CGGGCTTCCEEEEECCTTCSSCCT---TTT-----TCSSCCEEECTTCTTSCH
T ss_pred hhcccCCCCEEEecCCcCCccChH---HHh-----cCCCCCEEECcCCCCCcc
Confidence 8 999999999999998887764 333 55566666666665 443
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=4.3e-12 Score=115.07 Aligned_cols=107 Identities=22% Similarity=0.184 Sum_probs=86.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..|.++++|+.|+|++|.+. +..|..|..+++|++|+|++|+|+.+|.. +..+++|++|+|++|+
T Consensus 37 L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence 578889988887778899999999999999997 55688899999999999999999988865 5789999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQI 116 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~ 116 (372)
+.+..| ..+. ++++|+.|+++.|.++...
T Consensus 116 l~~~~~---~~~~-----~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 116 INCLRV---DAFQ-----DLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CCCCCT---TTTT-----TCTTCCEEECCSSCCSCCC
T ss_pred CCEeCH---HHcC-----CCCCCCEEECCCCcCCEEC
Confidence 654322 2233 7788888998888877643
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.32 E-value=1.5e-12 Score=121.90 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=43.2
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCC-Cccc-chhhhcCCCCcEEEccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNN-FVTL-LASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~-l~~l-P~~i~~L~~L~~L~L~~n~ 79 (372)
+|++|.+....|..+.++++|+.|+|++|.+. +..|..+..+++|++|+|++|. ++.+ |..+..+++|++|+|++|.
T Consensus 38 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~ 116 (285)
T 1ozn_A 38 FLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116 (285)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc
Confidence 45555555555555555555555555555554 3334555555555555555554 4444 3445555555555555555
Q ss_pred ccc
Q 017394 80 MLQ 82 (372)
Q Consensus 80 ~l~ 82 (372)
+.+
T Consensus 117 l~~ 119 (285)
T 1ozn_A 117 LQE 119 (285)
T ss_dssp CCC
T ss_pred CCE
Confidence 433
No 10
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=7.2e-12 Score=114.17 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=84.9
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+..|..+.++++|+.|+|++|++. .+|. .+..+++|++|+|++|+|+.+|.. +..+++|++|+|++|
T Consensus 45 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG--ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEcCCCccCccCHHHhhCccCCcEEECCCCCCC--CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 578999999988888999999999999999995 3654 468899999999999999988754 688999999999999
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQ 115 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~ 115 (372)
++. . +|..+. ++++|+.|+++.|.++..
T Consensus 123 ~l~-~---lp~~~~-----~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 123 KLT-E---LPRGIE-----RLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp CCC-S---CCTTGG-----GCTTCSEEECCSSCCCCC
T ss_pred ccc-c---cCcccc-----cCCCCCEEECCCCcCCcc
Confidence 854 3 444443 778899999998887753
No 11
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=1.6e-12 Score=138.27 Aligned_cols=90 Identities=28% Similarity=0.297 Sum_probs=49.8
Q ss_pred CccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccccCCCCCCcccc
Q 017394 13 SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKMLQNLPRLPARIQ 92 (372)
Q Consensus 13 P~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~ 92 (372)
|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|+|+.||..|+.|++|++|+|++|++. .| |..+.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~l---p~~~~ 290 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SL---PAELG 290 (727)
T ss_dssp -----CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SC---CSSGG
T ss_pred hhhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-cc---Chhhc
Confidence 455566666666666666663 3666666666666666666666666666666666666666666633 23 33333
Q ss_pred cccccCCcccccccCcCccCC
Q 017394 93 GISLDGCVSLETLSDVLNLNE 113 (372)
Q Consensus 93 ~L~~~~c~sL~~l~~~~n~l~ 113 (372)
++++|+.|+++.|.++
T Consensus 291 -----~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 291 -----SCFQLKYFYFFDNMVT 306 (727)
T ss_dssp -----GGTTCSEEECCSSCCC
T ss_pred -----CCCCCCEEECCCCCCC
Confidence 4555555555555543
No 12
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=1.7e-11 Score=109.44 Aligned_cols=105 Identities=22% Similarity=0.262 Sum_probs=78.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..+..+.++++|+.|+|++|++. +..+..+..+++|++|+|++|+++.+|.. +..+++|++|+|++|+
T Consensus 33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc
Confidence 578888888776666788889999999998886 33334468888999999999988877754 6888899999998887
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.+ +| ... +.++++|++|+++.|.++.
T Consensus 112 l~~-~~---~~~----~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 112 LQS-LP---DGV----FDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCC-CC---TTT----TTTCTTCCEEECCSSCCSC
T ss_pred Ccc-cC---HhH----hccCCcCCEEECCCCccce
Confidence 543 22 211 1367788888888887765
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=3e-12 Score=116.08 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=57.1
Q ss_pred CcccCCCCCCcCCc-cccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSS-SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~-si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+..|. .|.++++|+.|+|++|.+. +..|..|..+++|++|+|++|.++.+|. .+..+++|++|+|++|
T Consensus 37 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp EECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred EEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence 34556665555432 3555666666666666664 3333356666666666666666664443 3556666666666666
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
++.+..|. .+. ++++|+.|+++.|.++.
T Consensus 116 ~l~~~~~~---~~~-----~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 116 RITCVGND---SFI-----GLSSVRLLSLYDNQITT 143 (220)
T ss_dssp CCCCBCTT---SST-----TCTTCSEEECTTSCCCC
T ss_pred cCCeECHh---HcC-----CCccCCEEECCCCcCCE
Confidence 54432221 222 45566666666665554
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.29 E-value=5.9e-12 Score=129.22 Aligned_cols=105 Identities=26% Similarity=0.289 Sum_probs=88.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|||++|.|.+..|.+|.++++|++|+|++|+|. +..|..|.+|++|++|+|++|+++.+|. .|.++++|++|+|++|+
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence 689999999888889999999999999999996 3334569999999999999999998885 68999999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.+ +|.. .+ .++++|++|+++.|.++.
T Consensus 136 l~~-l~~~--~~-----~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 136 LAS-LENF--PI-----GHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp CCC-STTC--CC-----TTCTTCCEEECCSSCCCC
T ss_pred CCC-CChh--hh-----hcCcccCeeccccCcccc
Confidence 543 3321 13 378889999999888765
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=9.4e-13 Score=142.42 Aligned_cols=85 Identities=16% Similarity=0.265 Sum_probs=71.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEee-cCCCCCCCC-------------------------------------------
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDI-SYCDLGEGA------------------------------------------- 36 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~L-s~n~l~~~~------------------------------------------- 36 (372)
|+|++|++.|.+|++|++|++|+.|+| ++|.++ |.
T Consensus 328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~ls-G~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~ 406 (876)
T 4ecn_A 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406 (876)
T ss_dssp EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHH-HTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EECccCCCCCcCchHHhccccceEeeeccccccc-ccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence 578899999999999999999999999 666432 22
Q ss_pred ---------------------------------CCcccCCCCCCCEEeccCCCCcc------------------cchhhh
Q 017394 37 ---------------------------------IPSSIGDLCSLEELHLSGNNFVT------------------LLASIY 65 (372)
Q Consensus 37 ---------------------------------lP~~i~~L~~L~~L~Ls~N~l~~------------------lP~~i~ 65 (372)
||..|++|++|+.|+|++|+|+. +|..++
T Consensus 407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 78888899999999999999987 888877
Q ss_pred --cCCCCcEEEccccccccCCCC
Q 017394 66 --RLSSLRGIKLEECKMLQNLPR 86 (372)
Q Consensus 66 --~L~~L~~L~L~~n~~l~~lP~ 86 (372)
++++|++|+|++|.+.+.+|.
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCG
T ss_pred hccCCCCCEEECcCCCCCccChH
Confidence 999999999999988887663
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.27 E-value=7.7e-12 Score=124.19 Aligned_cols=80 Identities=26% Similarity=0.353 Sum_probs=39.3
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc--cCCCCCCCEEeccCCCCccc-chh-hhcCCCCcEEEccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS--IGDLCSLEELHLSGNNFVTL-LAS-IYRLSSLRGIKLEE 77 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~--i~~L~~L~~L~Ls~N~l~~l-P~~-i~~L~~L~~L~L~~ 77 (372)
+|++|.+.+..|..|.++++|++|+|++|.+. +.+|.. ++.+++|++|+|++|+++.+ |.. +..+++|++|+|++
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSCCB-THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCCCC-ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 44555554444445555555555555555553 333333 45555555555555555533 332 45555555555555
Q ss_pred ccccc
Q 017394 78 CKMLQ 82 (372)
Q Consensus 78 n~~l~ 82 (372)
|.+.+
T Consensus 164 n~l~~ 168 (455)
T 3v47_A 164 NKVKS 168 (455)
T ss_dssp CCBSC
T ss_pred Ccccc
Confidence 55433
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.27 E-value=2.8e-11 Score=111.34 Aligned_cols=105 Identities=24% Similarity=0.297 Sum_probs=77.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..+.++++|+.|+|++|.+. +..|..+..+++|++|+|++|+++.+|. .+..+++|++|+|++|+
T Consensus 40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 118 (251)
T 3m19_A 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc
Confidence 578889988888888889999999999999987 5566668889999999999999997774 56888999999999987
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.+ +|. .. +.++++|+.|+++.|.++.
T Consensus 119 l~~-~~~---~~----~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 119 LKS-LPS---GV----FDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CCC-CCT---TT----TTTCTTCCEEECCSSCCCC
T ss_pred CCC-cCh---hH----hccCCcccEEECcCCcCCc
Confidence 543 332 11 1144555555555554443
No 18
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.2e-11 Score=109.73 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=35.6
Q ss_pred cccCCCCCCcCCc-cccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 2 PWSSDPVALSLSS-SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 2 ~Ls~N~i~~~lP~-si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
+|++|.+.+..|. .+..+++|+.|+|++|.+. +..|..+..+++|++|+|++|+|+.+|. .+..+++|++|+|++|+
T Consensus 35 ~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp ECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred ECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 3444444433332 2444444444444444443 3334444444444444444444443332 24444444444444444
Q ss_pred cc
Q 017394 80 ML 81 (372)
Q Consensus 80 ~l 81 (372)
+.
T Consensus 114 l~ 115 (192)
T 1w8a_A 114 IS 115 (192)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 19
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.26 E-value=2.9e-11 Score=112.45 Aligned_cols=105 Identities=25% Similarity=0.291 Sum_probs=84.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..+..+.++++|+.|+|++|.+. +..+..+..+++|++|+|++|.++.+| ..+..+++|++|++++|.
T Consensus 33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC
Confidence 578999998888778999999999999999996 444557899999999999999999666 678999999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.+ ++.. . +.++++|++|+++.|.+..
T Consensus 112 l~~-~~~~--~-----~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 112 LAS-LENF--P-----IGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp CCC-STTC--C-----CTTCTTCCEEECCSSCCCC
T ss_pred ccc-cCch--h-----cccCCCCCEEECcCCccce
Confidence 543 2221 1 3377888888888887765
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.26 E-value=2.2e-11 Score=115.01 Aligned_cols=103 Identities=21% Similarity=0.191 Sum_probs=72.0
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+..|..+.++++|+.|+|++|.+. .+|.. +.+++|++|+|++|.++.+|..+..+++|++|+|++|++
T Consensus 36 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l 112 (290)
T 1p9a_G 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112 (290)
T ss_dssp EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC--EEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCC
T ss_pred EEcCCCcCCccCHHHhhcCCCCCEEECCCCccC--cccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcC
Confidence 467777777777777777778888888877774 25543 677778888888887777777777777888888887774
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+ +| |..+ .++++|+.|.++.|.++.
T Consensus 113 ~~-l~--~~~~-----~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 113 TS-LP--LGAL-----RGLGELQELYLKGNELKT 138 (290)
T ss_dssp CC-CC--SSTT-----TTCTTCCEEECTTSCCCC
T ss_pred cc-cC--HHHH-----cCCCCCCEEECCCCCCCc
Confidence 42 22 1122 266777777777777665
No 21
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=3.4e-11 Score=105.39 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=84.2
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|++++|.+ +.+|..+. ++|+.|+|++|++. +..|..++.+++|++|+|++|+|+.+|.. +..+++|++|+|++|+
T Consensus 17 l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 17 VNCQNIRL-ASVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EECCSSCC-SSCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCC-CccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 47888888 66777664 89999999999997 66688899999999999999999999976 5899999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.+ +|. ..+. ++++|+.|.+..|.+..
T Consensus 93 l~~-l~~--~~~~-----~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKS-IPR--GAFD-----NLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCC-CCT--TTTT-----TCTTCSEEECCSSCBCT
T ss_pred cce-eCH--HHhc-----cccCCCEEEeCCCCccc
Confidence 543 332 1133 78899999999987755
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.25 E-value=4e-12 Score=132.88 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=91.0
Q ss_pred CcccCCCCCCc-----------------CCcccc--CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCC-Cc--
Q 017394 1 MPWSSDPVALS-----------------LSSSLS--GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNN-FV-- 58 (372)
Q Consensus 1 L~Ls~N~i~~~-----------------lP~si~--~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~-l~-- 58 (372)
|+|++|.+.+. +|+.++ ++++|++|+|++|++. +.+|..++++++|++|+|++|+ ++
T Consensus 211 L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~l~~~ 289 (636)
T 4eco_A 211 FYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACNRGISGE 289 (636)
T ss_dssp EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC-SSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred EECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC-ccChHHHhcCCCCCEEECcCCCCCccc
Confidence 68999999996 999999 9999999999999998 8999999999999999999998 88
Q ss_pred ccchhhhcC------CCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394 59 TLLASIYRL------SSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP 117 (372)
Q Consensus 59 ~lP~~i~~L------~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~ 117 (372)
.+|..++.+ ++|++|+|++|++. .+|.. ..+. ++++|+.|+++.|.+.+.+|
T Consensus 290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~-~~l~-----~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 290 QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE-TSLQ-----KMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH-HHHT-----TCTTCCEEECCSCCCEEECC
T ss_pred cchHHHHhhhccccCCCCCEEECCCCcCC-ccCch-hhhc-----cCCCCCEEeCcCCcCccchh
Confidence 599999887 99999999999865 45430 0333 66777777777777765444
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.25 E-value=2.6e-11 Score=110.46 Aligned_cols=105 Identities=22% Similarity=0.235 Sum_probs=87.9
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+....+..+.++++|+.|+|++|++. +..+..+..+++|++|+|++|+|+.+|..+..+++|++|+|++|++
T Consensus 69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC
T ss_pred EECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC
Confidence 589999997776677899999999999999997 4444557899999999999999999999999999999999999985
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+ +|. ..+ ..+++|+.|.+..|.+.+
T Consensus 148 ~~-~~~--~~~-----~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 148 KS-IPH--GAF-----DRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CC-CCT--TTT-----TTCTTCCEEECTTSCBCT
T ss_pred Cc-cCH--HHH-----hCCCCCCEEEeeCCCccC
Confidence 43 332 223 378899999999887765
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.24 E-value=4e-11 Score=111.78 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=69.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+. +.+..+++|++|+|++|.+. +..|..++.+++|++|+|++|+++.+|.. +..+++|++|+|++|+
T Consensus 68 L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp EECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc
Confidence 46788887663 46788888888888888886 44444578888888888888888866644 6788888888888887
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.+..|. .+ .++++|+.|+++.|.++.
T Consensus 145 l~~~~~~---~~-----~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 145 LQSLPKG---VF-----DKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CCCCCTT---TT-----TTCTTCCEEECCSSCCCC
T ss_pred cCccCHH---Hh-----ccCccCCEEECCCCCcCc
Confidence 5432221 11 245555555555555443
No 25
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=9.8e-12 Score=105.07 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=87.9
Q ss_pred CcccCCCCC-CcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcc-cchhhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVA-LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT-LLASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~-~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~-lP~~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+. +.+|+.+..+++|+.|+|++|.+. + + ..++.+++|++|+|++|.++. +|..+..+++|++|++++|
T Consensus 22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-S-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp EECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-C-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred EEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-C-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 578999998 789998999999999999999996 3 4 779999999999999999996 8988888999999999999
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
++.+ +| .+..+ .++++|++|+++.|.++.
T Consensus 99 ~i~~-~~-~~~~~-----~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 99 KIKD-LS-TIEPL-----KKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CCCS-HH-HHGGG-----GGCTTCCEEECTTCGGGG
T ss_pred cCCC-hH-HHHHH-----hhCCCCCEEeCcCCcccc
Confidence 8543 21 11233 388899999999987765
No 26
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=1.4e-11 Score=109.87 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=85.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..+..+.++++|++|+|++|++. +..+..+..+++|++|+|++|+++.+|.. +..+++|++|+|++|.
T Consensus 57 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence 579999998777777899999999999999996 44444579999999999999999988764 7899999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.+ +|. ..+ .++++|+.|++..|.+.+
T Consensus 136 l~~-~~~--~~~-----~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 136 LKS-VPD--GVF-----DRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CSC-CCT--TTT-----TTCTTCCEEECCSCCBCC
T ss_pred cce-eCH--HHh-----ccCCCccEEEecCCCeec
Confidence 653 322 112 367888999988886655
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.23 E-value=7.8e-11 Score=110.08 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=69.9
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEcccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~~ 80 (372)
+.+++.+. .+|..+ .++|+.|+|++|.+. +..+..+..+++|++|+|++|.++.+ |..+..+++|++|+|++|..
T Consensus 17 ~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 17 SCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp ECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 44555553 445433 468899999999986 44445688899999999999998866 67888899999999998874
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
++.++ |..+. ++++|++|.+..|.+..
T Consensus 93 l~~~~--~~~~~-----~l~~L~~L~l~~n~l~~ 119 (285)
T 1ozn_A 93 LRSVD--PATFH-----GLGRLHTLHLDRCGLQE 119 (285)
T ss_dssp CCCCC--TTTTT-----TCTTCCEEECTTSCCCC
T ss_pred ccccC--HHHhc-----CCcCCCEEECCCCcCCE
Confidence 44442 11222 55566666666665544
No 28
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=2e-11 Score=110.64 Aligned_cols=105 Identities=20% Similarity=0.202 Sum_probs=89.9
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..|.++++|+.|+|++|.+. +..|..+..+++|++|+|++|+++.+ |..+..+++|++|+|++|+
T Consensus 62 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 62 INFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred EECCCCcCCEECHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 589999999988889999999999999999997 55556699999999999999999966 6789999999999999999
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.+..|. .+. .+++|+.|++..|.+.+
T Consensus 141 l~~~~~~---~~~-----~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 141 ITTVAPG---AFD-----TLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCBCTT---TTT-----TCTTCCEEECCSCCEEC
T ss_pred CCEECHH---Hhc-----CCCCCCEEEecCcCCcC
Confidence 6653332 333 77899999999887755
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.23 E-value=2.2e-11 Score=121.19 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=81.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+....+..|.++++|+.|+|++|.+. +..|..|.++++|++|+|++|+++.+|. .|..+++|++|+|++|+
T Consensus 69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 147 (440)
T 3zyj_A 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147 (440)
T ss_dssp EECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC
T ss_pred EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc
Confidence 578888888888888888888999999988886 4444678888888888888888887775 58888888888888887
Q ss_pred cccCCCC-C---Cccccccccc--------------CCcccccccCcCccCCC
Q 017394 80 MLQNLPR-L---PARIQGISLD--------------GCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~-l---p~~l~~L~~~--------------~c~sL~~l~~~~n~l~~ 114 (372)
+.. +|. . ..+|+.|++. ++++|+.|+++.|.++.
T Consensus 148 i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 148 IES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred ccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 543 332 1 1234444333 45667777777776653
No 30
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=8e-11 Score=102.42 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=37.9
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
+|++|.+.+..+..+.++++|+.|+|++|.+. +..+..+..+++|++|+|++|+++.+|.. +..+++|++|+|++|.
T Consensus 34 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 34 ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc
Confidence 44555554444444455555555555555553 22222245555555555555555544432 3455555555555554
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.22 E-value=1.4e-11 Score=122.96 Aligned_cols=178 Identities=15% Similarity=0.157 Sum_probs=116.7
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..|.++++|+.|+|++|++. +..|..+.++++|++|+|++|+++.+|.. +..+++|++|+|++|+
T Consensus 80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 158 (452)
T 3zyi_A 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC
T ss_pred EECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC
Confidence 578999999988899999999999999999997 55567889999999999999999988754 7889999999999998
Q ss_pred cccCCCC-C---Cccccccccc--------------CCcccccccCcCccCCCCCCccc-------ccccccccccccch
Q 017394 80 MLQNLPR-L---PARIQGISLD--------------GCVSLETLSDVLNLNEHQIPNIH-------VHCVDCLKLAGNYD 134 (372)
Q Consensus 80 ~l~~lP~-l---p~~l~~L~~~--------------~c~sL~~l~~~~n~l~~~~~~l~-------~~~~nc~kL~~~~~ 134 (372)
+. .+|. . ..+|+.|++. ++++|+.|+++.|.++.. +.+. +++.+ +++.+..+
T Consensus 159 l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~-N~l~~~~~ 235 (452)
T 3zyi_A 159 IE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSG-NHFPEIRP 235 (452)
T ss_dssp CC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTT-SCCSEECG
T ss_pred cc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcC-CcCcccCc
Confidence 54 3332 1 1244555443 467778888888777652 2110 11222 12223334
Q ss_pred HHHHHHHHHhhcCCCCCCCceeecCCC--CCCcccccccCCCCeEEEecCCCC
Q 017394 135 LALSLLKEYIKNSECSWRDFCIVVPGS--EIPEWFEYQNNEGSSITISTPPKT 185 (372)
Q Consensus 135 ~~l~~l~~~l~~~~~~~~~~~~~lPg~--~IP~wf~~~~~~g~slt~~Lp~~~ 185 (372)
..+..+.+ |+.+.++.|.+....|+. ..| -+.....++|.++ .+|+..
T Consensus 236 ~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~-~~~~~~ 285 (452)
T 3zyi_A 236 GSFHGLSS-LKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLS-SLPHDL 285 (452)
T ss_dssp GGGTTCTT-CCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCS-CCCTTS
T ss_pred ccccCccC-CCEEEeCCCcCceECHHHhcCCC-CCCEEECCCCcCC-ccChHH
Confidence 44544444 677777788777654432 111 2233333456665 455443
No 32
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1.9e-11 Score=105.36 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=88.3
Q ss_pred CcccCCCCC-CcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcc-cchhhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVA-LSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT-LLASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~-~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~-lP~~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+. +.+|..+..+++|+.|+|++|.+. + + ..+..+++|++|+|++|.++. +|..+..+++|++|+|++|
T Consensus 29 L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-S-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp EECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-C-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred EECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-C-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence 578999997 789998999999999999999996 3 4 789999999999999999996 8888888999999999999
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQ 115 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~ 115 (372)
++.+ +|.+ ..+ ..+++|+.|+++.|.+...
T Consensus 106 ~l~~-~~~~-~~l-----~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 106 KLKD-ISTL-EPL-----KKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp SCCS-SGGG-GGG-----SSCSCCCEEECCSSGGGTS
T ss_pred ccCc-chhH-HHH-----hcCCCCCEEEeeCCcCcch
Confidence 8533 3321 233 3789999999999987653
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=2.9e-11 Score=125.17 Aligned_cols=84 Identities=11% Similarity=0.094 Sum_probs=64.9
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..|..+++|+.|+|++|.+. +..|..++.+++|++|+|++|.++.+|.. ++.+++|++|+|++|.
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence 567888888777778888888888888888886 55555678888888888888888877765 4788888888888887
Q ss_pred cccCCC
Q 017394 80 MLQNLP 85 (372)
Q Consensus 80 ~l~~lP 85 (372)
+.+..|
T Consensus 159 l~~~~~ 164 (597)
T 3oja_B 159 LERIED 164 (597)
T ss_dssp CCBCCT
T ss_pred CCCCCh
Confidence 665444
No 34
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=9.2e-12 Score=110.39 Aligned_cols=104 Identities=21% Similarity=0.220 Sum_probs=83.8
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc--ccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS--SIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEE 77 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~--~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~ 77 (372)
|++++|.+ +.+|..+.. +|+.|+|++|++. .+|. .++.+++|++|+|++|+++.+ |..|..+++|++|+|++
T Consensus 13 l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 13 VDCTGRGL-KEIPRDIPL--HTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EECTTSCC-SSCCSCCCT--TCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEcCCCCc-CcCccCCCC--CCCEEECCCCcCC--ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 57889988 667776654 8999999999996 3554 389999999999999999966 78899999999999999
Q ss_pred cccccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394 78 CKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP 117 (372)
Q Consensus 78 n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~ 117 (372)
|++.+..|. .+ .++++|++|+++.|.++...+
T Consensus 88 N~l~~~~~~---~~-----~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 88 NKIKEISNK---MF-----LGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp CCCCEECSS---SS-----TTCTTCCEEECCSSCCCEECT
T ss_pred CcCCccCHH---Hh-----cCCCCCCEEECCCCcCCeeCH
Confidence 996653332 23 267889999999988876444
No 35
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=7.5e-11 Score=102.59 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=83.7
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|++++|.+.. +|..+. ++|+.|+|++|++. +..|..+..+++|++|+|++|+|+.+|.. +..+++|++|+|++|+
T Consensus 14 l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 14 VDCSGKSLAS-VPTGIP--TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EECTTSCCSS-CCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCc-cCccCC--CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 5788998855 676663 89999999999997 56688899999999999999999988865 5899999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.+ +|. ..+. ++++|+.|++..|.+..
T Consensus 90 l~~-~~~--~~~~-----~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKS-IPR--GAFD-----NLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCC-CCT--TTTT-----TCTTCCEEECCSSCBCT
T ss_pred cCE-eCH--HHhc-----CCCCCCEEEeCCCCCCC
Confidence 553 322 1233 78899999999987765
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.21 E-value=3.7e-11 Score=123.71 Aligned_cols=147 Identities=22% Similarity=0.256 Sum_probs=104.8
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..|.++++|+.|+|++|.+. +..|..|+++++|++|+|++|.++.+ |..|+++++|++|+|++|.
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 115 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc
Confidence 578999999888888999999999999999997 55577899999999999999999966 7889999999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC-CCCccccccccccccc----------ccchHHHHHHHHH---hh
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH-QIPNIHVHCVDCLKLA----------GNYDLALSLLKEY---IK 145 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~-~~~~l~~~~~nc~kL~----------~~~~~~l~~l~~~---l~ 145 (372)
+.+ +|. ..+ .++++|++|+++.|.+.. .+|. .+.++.+|. +..+..+..+.+. +.
T Consensus 116 l~~-~~~--~~~-----~~l~~L~~L~L~~n~l~~~~lp~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 116 LAS-LES--FPI-----GQLITLKKLNVAHNFIHSCKLPA---YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp CCC-SSS--SCC-----TTCTTCCEEECCSSCCCCCCCCG---GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred ccc-ccc--ccc-----CCCCCCCEEeCCCCcccceechH---hHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 543 221 123 377888888888887764 3333 233333332 2233444444431 22
Q ss_pred cCCCCCCCceeecC
Q 017394 146 NSECSWRDFCIVVP 159 (372)
Q Consensus 146 ~~~~~~~~~~~~lP 159 (372)
.+.++.+.+....+
T Consensus 185 ~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 185 SLDMSLNPIDFIQD 198 (606)
T ss_dssp EEECTTCCCCEECT
T ss_pred eeeccCCCcceeCc
Confidence 46666666665433
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.20 E-value=3.1e-11 Score=120.55 Aligned_cols=151 Identities=19% Similarity=0.146 Sum_probs=105.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..|.++++|+.|+|++|.+. +..+..+..+++|++|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 104 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~ 182 (452)
T 3zyi_A 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred EECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC
Confidence 578899998888888999999999999999986 3334458889999999999999997775 67888888888888877
Q ss_pred cccCCCCC----Cccccccccc-----------CCcccccccCcCccCCCCCCccccccccccccc----------ccch
Q 017394 80 MLQNLPRL----PARIQGISLD-----------GCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA----------GNYD 134 (372)
Q Consensus 80 ~l~~lP~l----p~~l~~L~~~-----------~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~----------~~~~ 134 (372)
.++.+|.- ..+|+.|+++ .+++|+.|+++.|.+....+. .|.++.+|. +..+
T Consensus 183 ~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPG---SFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGG---GGTTCTTCCEEECTTSCCCEECT
T ss_pred CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcc---cccCccCCCEEEeCCCcCceECH
Confidence 66666541 1345555443 456888888888887664332 233333332 2223
Q ss_pred HHHHHHHHHhhcCCCCCCCcee
Q 017394 135 LALSLLKEYIKNSECSWRDFCI 156 (372)
Q Consensus 135 ~~l~~l~~~l~~~~~~~~~~~~ 156 (372)
..+..+.+ |+.+.++.|.+..
T Consensus 260 ~~~~~l~~-L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 260 NAFDGLAS-LVELNLAHNNLSS 280 (452)
T ss_dssp TTTTTCTT-CCEEECCSSCCSC
T ss_pred HHhcCCCC-CCEEECCCCcCCc
Confidence 33444443 6777788887764
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.20 E-value=2.5e-11 Score=120.82 Aligned_cols=113 Identities=23% Similarity=0.279 Sum_probs=91.2
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+....|..|.++++|+.|+|++|++. + +|. .+..+++|++|+|++|.++.+|. .+..+++|+.|+|++|
T Consensus 93 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-T-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp EECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-S-CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred EECCCCcCCccChhhccCCccCCEEECCCCcCC-e-eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC
Confidence 579999999988889999999999999999996 3 554 69999999999999999998775 6888999999999988
Q ss_pred ccccCCCCC----Cccccccccc-----------CCcccccccCcCccCCCC
Q 017394 79 KMLQNLPRL----PARIQGISLD-----------GCVSLETLSDVLNLNEHQ 115 (372)
Q Consensus 79 ~~l~~lP~l----p~~l~~L~~~-----------~c~sL~~l~~~~n~l~~~ 115 (372)
+.++.++.- ..+|+.|+++ .+++|+.|+++.|.++..
T Consensus 171 ~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp TTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence 777666541 2346666554 456888888888877654
No 39
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=2.7e-11 Score=125.29 Aligned_cols=105 Identities=23% Similarity=0.249 Sum_probs=90.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+ +|. +++|++|+.|+|++|.|. .+|..++.|++|+.|+|++|+|+.+| .++.+++|+.|+|++|++
T Consensus 446 L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 446 LHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp EECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred EEecCCCCCC-CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 5899999987 676 999999999999999995 59999999999999999999999999 899999999999999986
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP 117 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~ 117 (372)
.+.. .|..+. ++++|+.|+++.|.+++..+
T Consensus 521 ~~~~--~p~~l~-----~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 521 QQSA--AIQPLV-----SCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CSSS--TTGGGG-----GCTTCCEEECTTSGGGGSSS
T ss_pred CCCC--CcHHHh-----cCCCCCEEEecCCcCCCCcc
Confidence 5422 144554 78999999999998877443
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.19 E-value=4.4e-11 Score=120.25 Aligned_cols=165 Identities=16% Similarity=0.074 Sum_probs=99.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hh---------------
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SI--------------- 64 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i--------------- 64 (372)
|+|++|.+.+. .++.+++|+.|+|++|++. + +| ++.+++|+.|++++|+++.+|. .+
T Consensus 196 L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~ 268 (457)
T 3bz5_A 196 LNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-E-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE 268 (457)
T ss_dssp EECCSSCCSCC---CCTTCTTCSEEECCSSCCS-C-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred EECcCCcCCee---ccccCCCCCEEECcCCccc-c-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCE
Confidence 35666776654 2666777777777777775 2 55 6667777777777776665442 11
Q ss_pred --------------hcCCCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccCCCCCCccccccccccccc
Q 017394 65 --------------YRLSSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA 130 (372)
Q Consensus 65 --------------~~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~ 130 (372)
+.+++|+.|+|++|..++.+|.-...++.|++++|++|+.|+++.|.+++. .+.+|.+|.
T Consensus 269 L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l------~l~~l~~L~ 342 (457)
T 3bz5_A 269 IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL------DVSHNTKLK 342 (457)
T ss_dssp CCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC------CCTTCTTCS
T ss_pred EECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc------ccccCCcCc
Confidence 234566666666666666666555567777888888889998888888762 345555543
Q ss_pred -----ccchHHHHHHHHHhhcCCCCCCCceeecCCCCCCcccccccCCCCeEEEecCCCCc
Q 017394 131 -----GNYDLALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFEYQNNEGSSITISTPPKTY 186 (372)
Q Consensus 131 -----~~~~~~l~~l~~~l~~~~~~~~~~~~~lPg~~IP~wf~~~~~~g~slt~~Lp~~~~ 186 (372)
++.-..+ . .+..+.+..+.+.+. |. ...+.....+.+.++|.+|+.+.
T Consensus 343 ~L~l~~N~l~~l---~-~L~~L~l~~n~l~g~-~~---~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 343 SLSCVNAHIQDF---S-SVGKIPALNNNFEAE-GQ---TITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp EEECCSSCCCBC---T-TGGGSSGGGTSEEEE-EE---EEECCCBCCBTTBEEEECCTTCB
T ss_pred EEECCCCCCCCc---c-ccccccccCCcEEec-ce---eeecCccccccCcEEEEcChhHh
Confidence 0000001 1 133444555566553 10 11122234457899999999876
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.19 E-value=6.4e-11 Score=120.65 Aligned_cols=147 Identities=24% Similarity=0.328 Sum_probs=107.8
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..|.++++|+.|+|++|.+. +..|..|+++++|++|+|++|+++.+| ..|..+++|++|++++|+
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc
Confidence 689999999988889999999999999999996 445667999999999999999999776 689999999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC-CCCccccccccccccc----------ccchHHHHHHHHHh----
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH-QIPNIHVHCVDCLKLA----------GNYDLALSLLKEYI---- 144 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~-~~~~l~~~~~nc~kL~----------~~~~~~l~~l~~~l---- 144 (372)
+. .+|..+ +.+|++|++|+++.|.+.. ..|. .+.++.+|. +..+..+..+.+ +
T Consensus 112 l~-~l~~~~-------~~~l~~L~~L~L~~n~l~~~~lp~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~~~ 179 (570)
T 2z63_A 112 LA-SLENFP-------IGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLN 179 (570)
T ss_dssp CC-CSTTCS-------CTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECTTSCCCEECGGGGHHHHT-CTTCC
T ss_pred cc-cCCCcc-------ccccccccEEecCCCccceecChh---hhcccCCCCEEeCcCCccceecHHHccchhc-cchhh
Confidence 43 344322 3488888999988887765 2333 234443332 222344555544 3
Q ss_pred hcCCCCCCCceeecCC
Q 017394 145 KNSECSWRDFCIVVPG 160 (372)
Q Consensus 145 ~~~~~~~~~~~~~lPg 160 (372)
..+.++.+.+....|+
T Consensus 180 ~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPG 195 (570)
T ss_dssp CEEECTTCCCCEECTT
T ss_pred hhcccCCCCceecCHH
Confidence 3456667777665544
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=3.8e-11 Score=111.90 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=85.9
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..+.++++|+.|+|++|++. +..|..++.+++|++|+|++|+++.+|.. +..+++|+.|++++|+
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence 578999999888888899999999999999997 55555689999999999999999987754 6899999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP 117 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~ 117 (372)
+.+..+. .+ .++++|+.|++..|.+....+
T Consensus 169 l~~~~~~---~~-----~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 169 LQSLPEG---VF-----DKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CCCCCTT---TT-----TTCTTCCEEECCSSCCSCCCT
T ss_pred cCccCHH---Hh-----cCCccCCEEECCCCcCCccCH
Confidence 6542221 12 266777777777777765433
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.19 E-value=1.4e-11 Score=117.14 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=61.6
Q ss_pred CcccCCCC-CCcCCcccc-------CCCCCCEEeecCCCCCCCCCCccc--CCCCCCCEEeccCCCCcccchhhhcC---
Q 017394 1 MPWSSDPV-ALSLSSSLS-------GLCSLTKLDISYCDLGEGAIPSSI--GDLCSLEELHLSGNNFVTLLASIYRL--- 67 (372)
Q Consensus 1 L~Ls~N~i-~~~lP~si~-------~L~~L~~L~Ls~n~l~~~~lP~~i--~~L~~L~~L~Ls~N~l~~lP~~i~~L--- 67 (372)
|+|++|.+ ...+|..+. ++++|+.|+|++|.+. +.+|..+ +.+++|++|+|++|+++.+|..+..+
T Consensus 68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~ 146 (312)
T 1wwl_A 68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146 (312)
T ss_dssp CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTT
T ss_pred cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHh
Confidence 45666666 345555554 5667777777777765 5666665 66777777777777777556666655
Q ss_pred --CCCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccC
Q 017394 68 --SSLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLN 112 (372)
Q Consensus 68 --~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l 112 (372)
++|++|+|++|++.+..| ..+. ++++|++|+++.|.+
T Consensus 147 ~~~~L~~L~L~~N~l~~~~~---~~~~-----~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 147 LKPGLKVLSIAQAHSLNFSC---EQVR-----VFPALSTLDLSDNPE 185 (312)
T ss_dssp CCTTCCEEEEESCSCCCCCT---TTCC-----CCSSCCEEECCSCTT
T ss_pred hcCCCcEEEeeCCCCccchH---HHhc-----cCCCCCEEECCCCCc
Confidence 667777777766443221 1222 445555555555543
No 44
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=1.6e-11 Score=132.80 Aligned_cols=105 Identities=24% Similarity=0.294 Sum_probs=83.6
Q ss_pred CcccCCCCCC-----------------cCCcccc--CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCC-Cc--
Q 017394 1 MPWSSDPVAL-----------------SLSSSLS--GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNN-FV-- 58 (372)
Q Consensus 1 L~Ls~N~i~~-----------------~lP~si~--~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~-l~-- 58 (372)
|+|++|.+.+ .+|+.++ +|++|+.|+|++|++. +.+|..+++|++|+.|+|++|+ ++
T Consensus 453 L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-~~iP~~l~~L~~L~~L~Ls~N~~lsg~ 531 (876)
T 4ecn_A 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACNRGISAA 531 (876)
T ss_dssp EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-CSCCGGGGGCSSCCEEECTTCTTSCHH
T ss_pred EECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-ccChHHHhCCCCCCEEECcCCCCcccc
Confidence 5789999998 4899988 9999999999999988 8999999999999999999998 88
Q ss_pred ccchhhhcCC-------CCcEEEccccccccCCCCCCcccccccccCCcccccccCcCccCC
Q 017394 59 TLLASIYRLS-------SLRGIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNE 113 (372)
Q Consensus 59 ~lP~~i~~L~-------~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~ 113 (372)
.+|..|+.++ +|++|+|++|.+. .+|.. ..+. ++++|+.|+++.|.+.
T Consensus 532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~-~~l~-----~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS-ASLQ-----KMVKLGLLDCVHNKVR 586 (876)
T ss_dssp HHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH-HHHT-----TCTTCCEEECTTSCCC
T ss_pred cchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh-hhhh-----cCCCCCEEECCCCCcc
Confidence 4998888776 9999999999865 55540 0222 4455555555555544
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.18 E-value=9.7e-11 Score=107.74 Aligned_cols=107 Identities=20% Similarity=0.274 Sum_probs=88.2
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..+.++++|+.|+|++|++. +..|..+..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 64 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence 589999999988888999999999999999997 44556689999999999999999988865 6889999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQI 116 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~ 116 (372)
+.+ +|. ..+. ++++|++|+++.|.+....
T Consensus 143 l~~-~~~--~~~~-----~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 143 LQS-IPA--GAFD-----KLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCC-CCT--TTTT-----TCTTCCEEECCSSCCSCCC
T ss_pred CCc-cCH--HHcC-----cCcCCCEEECCCCcCCccC
Confidence 543 332 1233 6778888888888877643
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.18 E-value=5.3e-11 Score=118.11 Aligned_cols=132 Identities=15% Similarity=0.060 Sum_probs=99.9
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+.+|..+.++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc
Confidence 478888998888988999999999999999997 66677899999999999999999955 5778899999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCCCCCcccccccccccccccchHHHHHHHHHhhcCCCCCCCceeecC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLAGNYDLALSLLKEYIKNSECSWRDFCIVVP 159 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~~~~~~~l~~l~~~l~~~~~~~~~~~~~lP 159 (372)
+.+..| ..+. ++++|+.|+++.|.++...+. .+.++.+ |+.+.++.|.+....|
T Consensus 359 l~~~~~---~~~~-----~l~~L~~L~L~~N~l~~~~~~---~~~~l~~---------------L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 359 IRALGD---QSFL-----GLPNLKELALDTNQLKSVPDG---IFDRLTS---------------LQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEECT---TTTT-----TCTTCCEEECCSSCCSCCCTT---TTTTCTT---------------CCEEECCSSCBCCCTT
T ss_pred ccccCh---hhcc-----ccccccEEECCCCccccCCHh---HhccCCc---------------ccEEEccCCCcccCCC
Confidence 655333 2333 778889999988887763322 2333333 4456666777766443
No 47
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.18 E-value=8.6e-11 Score=109.28 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=55.2
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+....+..|.++++|+.|+|++|.+. .+|.. +..+++|++|+|++|.++.+|. .+..+++|++|+|++|
T Consensus 42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp EECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS--CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred EECcCCCCCeeCHHHhcCCCCCCEEECCCCccC--eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence 345555555554445556666666666666653 24433 3556666666666666665553 3455566666666665
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+.+..|. .+ .++++|++|+++.|.+..
T Consensus 120 ~l~~~~~~---~~-----~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 120 QLKSLPPR---VF-----DSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp CCCCCCTT---TT-----TTCTTCCEEECCSSCCCC
T ss_pred ccCeeCHH---Hh-----CcCcCCCEEECCCCcCCc
Confidence 53321111 11 255666666666665544
No 48
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.18 E-value=5.6e-11 Score=122.37 Aligned_cols=150 Identities=16% Similarity=0.169 Sum_probs=108.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..|.++++|++|+|++|.+. +..|..|+++++|++|+|++|+++.+ |..|+.+++|++|++++|.
T Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 116 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116 (606)
T ss_dssp EECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC
T ss_pred EEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC
Confidence 689999999998999999999999999999997 66788899999999999999999954 7789999999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCCC-CCccc-------ccccccccccccchHHHHHHHHHhh--cCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQ-IPNIH-------VHCVDCLKLAGNYDLALSLLKEYIK--NSEC 149 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~-~~~l~-------~~~~nc~kL~~~~~~~l~~l~~~l~--~~~~ 149 (372)
+.+ ++ |.. +.++++|++|.++.|.+... .+.+. +.+.++ ++.+..+..+..+.+ ++ .+.+
T Consensus 117 i~~-l~--~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~-L~~l~L~l 186 (606)
T 3t6q_A 117 ISS-ID--FIP-----LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQ-ATNLSLNL 186 (606)
T ss_dssp CSC-GG--GSC-----CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTT-CCSEEEEC
T ss_pred ccc-CC--cch-----hccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcc-cceeEEec
Confidence 553 21 112 34788888888888887652 22210 111111 122223444544443 44 4667
Q ss_pred CCCCceeecCCC
Q 017394 150 SWRDFCIVVPGS 161 (372)
Q Consensus 150 ~~~~~~~~lPg~ 161 (372)
+.+.+....|+.
T Consensus 187 ~~n~l~~~~~~~ 198 (606)
T 3t6q_A 187 NGNDIAGIEPGA 198 (606)
T ss_dssp TTCCCCEECTTT
T ss_pred CCCccCccChhH
Confidence 777777655543
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.18 E-value=1.3e-10 Score=110.97 Aligned_cols=78 Identities=17% Similarity=0.254 Sum_probs=57.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+..|..+.++++|+.|+|++|.+. +..|..++.+++|++|+|++|.++.+|..+. ++|++|++++|++
T Consensus 59 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i 135 (332)
T 2ft3_A 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRI 135 (332)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCC
T ss_pred EECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCcc
Confidence 467788887777777888888888888888886 4556778888888888888888777776554 5666666666664
Q ss_pred c
Q 017394 81 L 81 (372)
Q Consensus 81 l 81 (372)
.
T Consensus 136 ~ 136 (332)
T 2ft3_A 136 R 136 (332)
T ss_dssp C
T ss_pred C
Confidence 3
No 50
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.18 E-value=3.5e-11 Score=120.58 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=73.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..|.++++|+.|+|++|.+. +..|..|.++++|++|+|++|+++.+|. .+..+++|++|+|++|+
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence 589999999988889999999999999999997 5668889999999999999999998886 47899999999999998
Q ss_pred cccCCC
Q 017394 80 MLQNLP 85 (372)
Q Consensus 80 ~l~~lP 85 (372)
+.+..|
T Consensus 116 i~~~~~ 121 (477)
T 2id5_A 116 IVILLD 121 (477)
T ss_dssp CCEECT
T ss_pred cccCCh
Confidence 765444
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.18 E-value=8.1e-11 Score=114.91 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=62.2
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..+.++++|+.|+|++|.+. +..|..++.+++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus 74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152 (390)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc
Confidence 467788887777777888888888888888886 44555678888888888888888877765 4778888888888887
Q ss_pred cccC
Q 017394 80 MLQN 83 (372)
Q Consensus 80 ~l~~ 83 (372)
+.+.
T Consensus 153 l~~~ 156 (390)
T 3o6n_A 153 LERI 156 (390)
T ss_dssp CCBC
T ss_pred cCcc
Confidence 5543
No 52
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=9e-11 Score=104.27 Aligned_cols=100 Identities=23% Similarity=0.218 Sum_probs=51.4
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEcccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~~ 80 (372)
++++|.+. .+|..+. +.|+.|+|++|++. .+|..+..+++|+.|+|++|.++.+| ..|..+++|+.|+|++|++
T Consensus 16 ~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 16 RCSNKGLK-VLPKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp ECTTSCCS-SCCSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EcCCCCCC-cCCCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 44555543 3444332 35666666666663 35555666666666666666666444 3455666666666666653
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
....|. .+ .++++|+.|++..|.++.
T Consensus 91 ~~i~~~---~f-----~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 91 RCIPPR---TF-----DGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp CBCCTT---TT-----TTCTTCCEEECCSSCCCB
T ss_pred CEeCHH---Hh-----CCCCCCCEEECCCCCCCe
Confidence 321111 11 144555555555555443
No 53
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=1.1e-11 Score=131.72 Aligned_cols=102 Identities=23% Similarity=0.212 Sum_probs=91.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+. .+|+.+.+|++|+.|+|++|.|+ .+|..|+.|++|++|+|++|+|+.||..|+.|++|++|+|++|.+
T Consensus 229 L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 229 LDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp EECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC
T ss_pred EECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC
Confidence 689999987 78888999999999999999996 599999999999999999999999999999999999999999985
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+. +|..+. ++++|+.|+++.|.+.+
T Consensus 306 -~~---lp~~~~-----~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 306 -TT---LPWEFG-----NLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp -CC---CCSSTT-----SCTTCCCEECTTSCCCS
T ss_pred -Cc---cChhhh-----cCCCccEEeCCCCccCC
Confidence 34 444555 88999999999998876
No 54
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.17 E-value=8.5e-11 Score=106.45 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=87.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+..|..|.++++|+.|+|++|.+. .+|.. +..+++|++|+|++|+++.+ |..|..+++|++|+|++|
T Consensus 61 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT--ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp EECCSSCCCEECTTTTTTCSSCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC--ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 689999999999999999999999999999996 36665 68999999999999999966 568999999999999999
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
++.+ +|. ..+ ..+++|+.|++..|.+..
T Consensus 139 ~l~~-~~~--~~~-----~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 139 KLQT-IAK--GTF-----SPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSC-CCT--TTT-----TTCTTCCEEECCSSCEEC
T ss_pred cCCE-ECH--HHH-----hCCCCCCEEEeCCCCcCC
Confidence 9654 221 123 367889999998887644
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.16 E-value=1.3e-11 Score=116.60 Aligned_cols=105 Identities=26% Similarity=0.266 Sum_probs=67.4
Q ss_pred CcccCCCCCCcCC-ccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcc--cchhhhcCCCCcEEEccc
Q 017394 1 MPWSSDPVALSLS-SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT--LLASIYRLSSLRGIKLEE 77 (372)
Q Consensus 1 L~Ls~N~i~~~lP-~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~--lP~~i~~L~~L~~L~L~~ 77 (372)
|+|++|.+.+..+ ..+..+++|+.|+|++|.+. +..|..+..+++|+.|+|++|.+.. +|..+..+++|++|+|++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 4567777665544 45777777777777777775 5566667777777777777777763 677777777777777777
Q ss_pred cccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 78 CKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 78 n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
|++.+..|. .+. ++++|+.|+++.|.+..
T Consensus 185 n~l~~~~~~---~~~-----~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 185 CQLEQLSPT---AFN-----SLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp SCCCEECTT---TTT-----TCTTCCEEECTTSCCSB
T ss_pred CCcCCcCHH---Hhc-----CCCCCCEEECCCCccCc
Confidence 765443232 122 44555555555554443
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.16 E-value=1.7e-11 Score=124.55 Aligned_cols=76 Identities=20% Similarity=0.152 Sum_probs=38.4
Q ss_pred cccCCCCCCcCCc---cccCCCCCCEEeecCCCCCCCCCC---cccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEc
Q 017394 2 PWSSDPVALSLSS---SLSGLCSLTKLDISYCDLGEGAIP---SSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKL 75 (372)
Q Consensus 2 ~Ls~N~i~~~lP~---si~~L~~L~~L~Ls~n~l~~~~lP---~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L 75 (372)
+|++|.+.+.+|+ .++.+++|+.|+|++|++. .+| ..+..+++|++|+|++|+++.+|..+..+++|++|++
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR--SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC--CHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEEC
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCccc--ccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEEC
Confidence 4455555544432 2444555555555555553 132 2245555555555555555555555555555555555
Q ss_pred cccc
Q 017394 76 EECK 79 (372)
Q Consensus 76 ~~n~ 79 (372)
++|+
T Consensus 418 s~N~ 421 (549)
T 2z81_A 418 SSTG 421 (549)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 5555
No 57
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.16 E-value=8.6e-11 Score=114.17 Aligned_cols=105 Identities=18% Similarity=0.087 Sum_probs=79.2
Q ss_pred CcccCCCCCCcCCcccc-CCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLS-GLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~-~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+..+..+. ++++|+.|+|++|+|. +..|..|..+++|++|+|++|+|+.+|. .|..+++|+.|+|++|
T Consensus 44 L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC
Confidence 57888888887777777 8889999999999886 4444568888999999999999887765 5788889999999988
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
++....|. .+ .++++|+.|+++.|.++.
T Consensus 123 ~i~~~~~~---~~-----~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 123 HIVVVDRN---AF-----EDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CCCEECTT---TT-----TTCTTCCEEECCSSCCCS
T ss_pred cccEECHH---Hh-----CCcccCCEEECCCCcCCe
Confidence 86543222 22 256667777777776654
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.16 E-value=5e-11 Score=128.35 Aligned_cols=107 Identities=18% Similarity=0.099 Sum_probs=87.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCC-CcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAI-PSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~l-P~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n 78 (372)
|||++|.+.+..|..|.++++|++|+|++|.+. +.+ |..|+++++|++|+|++|+++.+ |..|..+++|++|+|++|
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCc-cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 689999999999999999999999999999776 667 77899999999999999999955 889999999999999999
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+.+.+|.- ..+ .++++|++|+++.|.+..
T Consensus 108 ~l~~~~~~~-~~~-----~~L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 108 GLSDAVLKD-GYF-----RNLKALTRLDLSKNQIRS 137 (844)
T ss_dssp CCSSCCSTT-CCC-----SSCSSCCEEEEESCCCCC
T ss_pred CCCcccccC-ccc-----cccCCCCEEECCCCcccc
Confidence 877644431 012 256666666666666554
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.16 E-value=1.1e-10 Score=111.59 Aligned_cols=107 Identities=18% Similarity=0.232 Sum_probs=62.6
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEcccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~~ 80 (372)
+++++.+. .+|..+. ++|+.|+|++|.+. +..|..+..+++|++|+|++|+++.+ |..+..+++|++|+|++|++
T Consensus 39 ~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 39 QCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114 (332)
T ss_dssp ECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred ECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence 45555553 4555442 56777777777765 33344677777777777777777744 55677777777777777764
Q ss_pred ccCCCC-CCcccccccc-------------cCCcccccccCcCccCC
Q 017394 81 LQNLPR-LPARIQGISL-------------DGCVSLETLSDVLNLNE 113 (372)
Q Consensus 81 l~~lP~-lp~~l~~L~~-------------~~c~sL~~l~~~~n~l~ 113 (372)
. .+|. ++.+++.|++ .++++|+.|++..|.+.
T Consensus 115 ~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 115 V-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp C-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred C-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 3 3432 2334444432 34556666666666553
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.16 E-value=6.8e-11 Score=111.53 Aligned_cols=104 Identities=24% Similarity=0.202 Sum_probs=83.2
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCC--cccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIP--SSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEE 77 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP--~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~ 77 (372)
|+|++|.+. .+|+.+..+++|+.|+|++|.+.. +| ..+..+++|++|+|++|.+. ..|..+..+++|+.|+|++
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEES--STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccc--cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 578899886 467779999999999999999963 44 47899999999999999999 5567789999999999999
Q ss_pred ccccc-CCCCCCcccccccccCCcccccccCcCccCCCC
Q 017394 78 CKMLQ-NLPRLPARIQGISLDGCVSLETLSDVLNLNEHQ 115 (372)
Q Consensus 78 n~~l~-~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~ 115 (372)
|.+.+ .+|. .+. ++++|+.|+++.|.+...
T Consensus 160 n~l~~~~~~~---~~~-----~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 160 NSFQENFLPD---IFT-----ELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp CEEGGGEECS---CCT-----TCTTCCEEECTTSCCCEE
T ss_pred Cccccccchh---HHh-----hCcCCCEEECCCCCcCCc
Confidence 98654 2333 333 677888888888877653
No 61
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.15 E-value=9.9e-11 Score=111.71 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=53.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+..+..|.++++|++|+|++|.+. +..|..++.+++|++|+|++|.++.+|..+. ++|+.|++++|++
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l 133 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEI 133 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCC
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcc
Confidence 467777777766667777777777777777775 4456777777777777777777777765543 5666666666653
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.14 E-value=8.4e-11 Score=122.83 Aligned_cols=148 Identities=17% Similarity=0.144 Sum_probs=105.1
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..|.++++|+.|+|++|.+. +..|..++++++|++|+|++|+++.+|. .|..+++|++|+|++|+
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence 578999998888888999999999999999997 6778889999999999999999998886 59999999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCCCCCccccccccccccc----------ccchHHHHHHH-HHhhcCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA----------GNYDLALSLLK-EYIKNSE 148 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~----------~~~~~~l~~l~-~~l~~~~ 148 (372)
+.+ +|. ..+. ++++|++|+++.|.+....+. .+.++.+|. +..+..+..+. ..|+.+.
T Consensus 109 l~~-~~~--~~~~-----~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 109 IQK-IKN--NPFV-----KQKNLITLDLSHNGLSSTKLG---TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp CCC-CCS--CTTT-----TCTTCCEEECCSSCCSCCCCC---SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred cCc-cCh--hHcc-----ccCCCCEEECCCCcccccCch---hhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 543 221 2233 677888888887777654332 223333332 22233332221 1266677
Q ss_pred CCCCCceeecCC
Q 017394 149 CSWRDFCIVVPG 160 (372)
Q Consensus 149 ~~~~~~~~~lPg 160 (372)
++.+.+....|+
T Consensus 178 L~~n~l~~~~~~ 189 (680)
T 1ziw_A 178 LSSNQIKEFSPG 189 (680)
T ss_dssp CTTCCCCCBCTT
T ss_pred CCCCcccccChh
Confidence 777777655444
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.14 E-value=5.6e-11 Score=120.77 Aligned_cols=104 Identities=21% Similarity=0.141 Sum_probs=82.7
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..|.++++|++|+|++|.+. +..|..|+.+++|++|+|++|.++.+|. .|+.+++|++|+|++|.
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 578999999888889999999999999999997 5666789999999999999999997775 49999999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLN 112 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l 112 (372)
+.+ ++ .|..+. ++++|++|++..|..
T Consensus 110 l~~-~~-~~~~~~-----~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 110 YQT-LG-VTSLFP-----NLTNLQTLRIGNVET 135 (549)
T ss_dssp CSS-SC-SSCSCT-----TCTTCCEEEEEESSS
T ss_pred ccc-cc-hhhhhh-----ccCCccEEECCCCcc
Confidence 653 11 122222 566677777766653
No 64
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.14 E-value=1.4e-10 Score=109.92 Aligned_cols=81 Identities=9% Similarity=0.034 Sum_probs=68.1
Q ss_pred CcccCCCCCCcCCccc--cCCCCCCEEeecCCCCCCCCCC----cccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEE
Q 017394 1 MPWSSDPVALSLSSSL--SGLCSLTKLDISYCDLGEGAIP----SSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGI 73 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si--~~L~~L~~L~Ls~n~l~~~~lP----~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L 73 (372)
|+|++|.+.+..|..+ ..+++|+.|+|++|.+. +..| ..+..+++|++|+|++|.+..+| ..+..+++|++|
T Consensus 96 L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 174 (310)
T 4glp_A 96 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA-TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSL 174 (310)
T ss_dssp EEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS-STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEE
T ss_pred EEeeCCEeccchhhhhhhccCCCCCEEEeeccccc-chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEE
Confidence 5788999999999888 88999999999999997 5555 34567899999999999999655 678899999999
Q ss_pred Ecccccccc
Q 017394 74 KLEECKMLQ 82 (372)
Q Consensus 74 ~L~~n~~l~ 82 (372)
+|++|++.+
T Consensus 175 ~Ls~N~l~~ 183 (310)
T 4glp_A 175 DLSDNPGLG 183 (310)
T ss_dssp ECCSCTTCH
T ss_pred ECCCCCCcc
Confidence 999998643
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=5.8e-11 Score=122.97 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=70.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+..|..|+++++|+.|+|++|.+. .+|.. ++.+++|++|+|++|.++.+| ..|..+++|++|+|++|
T Consensus 104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC--CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 689999999988888999999999999999996 36665 689999999999999999655 57999999999999999
Q ss_pred cccc
Q 017394 79 KMLQ 82 (372)
Q Consensus 79 ~~l~ 82 (372)
.+.+
T Consensus 182 ~l~~ 185 (597)
T 3oja_B 182 RLTH 185 (597)
T ss_dssp CCSB
T ss_pred CCCC
Confidence 8654
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.13 E-value=4.2e-11 Score=113.86 Aligned_cols=108 Identities=12% Similarity=0.058 Sum_probs=89.1
Q ss_pred CcccCCCCCCcCCccc--cCCCCCCEEeecCCCCCCCCCCcccCCC-----CCCCEEeccCCCCcccc-hhhhcCCCCcE
Q 017394 1 MPWSSDPVALSLSSSL--SGLCSLTKLDISYCDLGEGAIPSSIGDL-----CSLEELHLSGNNFVTLL-ASIYRLSSLRG 72 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si--~~L~~L~~L~Ls~n~l~~~~lP~~i~~L-----~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~ 72 (372)
|+|++|.+.+.+|..+ ..+++|+.|+|++|.+. + +|..++.+ ++|++|+|++|+++.+| ..|+.+++|++
T Consensus 100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-T-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-S-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred EEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-c-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 5799999999999987 89999999999999997 4 48888877 99999999999999776 78999999999
Q ss_pred EEccccccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 73 IKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 73 L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
|+|++|++.+.++. |.. +.+.++++|+.|+++.|.++.
T Consensus 178 L~Ls~N~l~~~~~~-~~~---~~~~~l~~L~~L~L~~N~l~~ 215 (312)
T 1wwl_A 178 LDLSDNPELGERGL-ISA---LCPLKFPTLQVLALRNAGMET 215 (312)
T ss_dssp EECCSCTTCHHHHH-HHH---SCTTSCTTCCEEECTTSCCCC
T ss_pred EECCCCCcCcchHH-HHH---HHhccCCCCCEEECCCCcCcc
Confidence 99999997653221 111 122478899999999887763
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.12 E-value=5.4e-11 Score=108.41 Aligned_cols=83 Identities=14% Similarity=0.196 Sum_probs=71.2
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCC-CCCCCCCc-ccCCCCCCCEEeccC-CCCcccc-hhhhcCCCCcEEEcc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCD-LGEGAIPS-SIGDLCSLEELHLSG-NNFVTLL-ASIYRLSSLRGIKLE 76 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~-l~~~~lP~-~i~~L~~L~~L~Ls~-N~l~~lP-~~i~~L~~L~~L~L~ 76 (372)
|+|++|.+.+..+..+.++++|+.|+|++|. +. .+|. .+..+++|++|+|++ |+++.+| ..+..+++|++|+++
T Consensus 36 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp EEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred EEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 5789999988888789999999999999997 74 4655 789999999999998 9999887 468899999999999
Q ss_pred ccccccCCCC
Q 017394 77 ECKMLQNLPR 86 (372)
Q Consensus 77 ~n~~l~~lP~ 86 (372)
+|++.+ +|.
T Consensus 114 ~n~l~~-lp~ 122 (239)
T 2xwt_C 114 NTGLKM-FPD 122 (239)
T ss_dssp EECCCS-CCC
T ss_pred CCCCcc-ccc
Confidence 998544 664
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=5.1e-11 Score=120.72 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=47.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+..|..|.++++|+.|+|++|.+. +..| ++.+++|++|+|++|.++.+|.. ++|++|++++|.+
T Consensus 39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l 111 (487)
T 3oja_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNI 111 (487)
T ss_dssp EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE-EEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCC
T ss_pred EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC-CCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcC
Confidence 456677776666666677777777777777665 3333 66667777777777766655532 5666666666654
Q ss_pred cc
Q 017394 81 LQ 82 (372)
Q Consensus 81 l~ 82 (372)
.+
T Consensus 112 ~~ 113 (487)
T 3oja_A 112 SR 113 (487)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 69
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.12 E-value=1.9e-11 Score=125.94 Aligned_cols=170 Identities=18% Similarity=0.159 Sum_probs=93.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+ +|..+.++++|+.|+|++|.+. +..| ..+..+++|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 381 L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLK-RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EECCSCSEEE-ECCCCTTCTTCCEEECTTSEEE-STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred eECCCCcccc-chhhccCCCCCCeeECCCCccC-CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 4567777654 4566777777777777777775 4444 46777777777777777777 45666777777777777777
Q ss_pred ccccC-CCCCCcccccccccCCcccccccCcCccCCCCCCccc--------ccccccccccccchHHHHHHHHHhhcCCC
Q 017394 79 KMLQN-LPRLPARIQGISLDGCVSLETLSDVLNLNEHQIPNIH--------VHCVDCLKLAGNYDLALSLLKEYIKNSEC 149 (372)
Q Consensus 79 ~~l~~-lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~~l~--------~~~~nc~kL~~~~~~~l~~l~~~l~~~~~ 149 (372)
++.+. +|. .+. ++++|+.|+++.|.+....+... +++.+| ++.+..|..+..+.. |+.+++
T Consensus 459 ~l~~~~~~~---~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~-L~~L~l 528 (606)
T 3vq2_A 459 SFKDNTLSN---VFA-----NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYS-LSTLDC 528 (606)
T ss_dssp EEGGGEECS---CCT-----TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTT-CCEEEC
T ss_pred cCCCcchHH---hhc-----cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCc-CCEEEC
Confidence 75542 332 222 44455555555554443222110 111111 222233444443333 667777
Q ss_pred CCCCceeecCCC--CCCcccccccCCCCeEEEecCC
Q 017394 150 SWRDFCIVVPGS--EIPEWFEYQNNEGSSITISTPP 183 (372)
Q Consensus 150 ~~~~~~~~lPg~--~IP~wf~~~~~~g~slt~~Lp~ 183 (372)
+.|.+.. +|.. ..|..+.....++|.++..-+-
T Consensus 529 ~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 529 SFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 7777763 3332 2233333334456666655443
No 70
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.11 E-value=5.4e-11 Score=102.52 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=86.1
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc--hhhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL--ASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP--~~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+. ..+..+++|+.|+|++|.+. +.+|..+..+++|++|+|++|+++.+| ..+..+++|++|++++|
T Consensus 54 L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 54 LSLINVGLISV--SNLPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp EEEESSCCCCC--SSCCCCSSCCEEEEESCCCC-SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred EeCcCCCCCCh--hhhccCCCCCEEECcCCcCc-hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 57899998876 77999999999999999997 668888888999999999999999887 78999999999999999
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+.+ +|... .-.+..+++|+.|++..|....
T Consensus 131 ~l~~-~~~~~----~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 131 EVTN-LNDYR----ESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp GGGT-STTHH----HHHHTTCSSCCEETTEETTSCB
T ss_pred cCcc-hHHHH----HHHHHhCccCcEecCCCCChhh
Confidence 8653 33210 0122378888888887775543
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.11 E-value=2e-10 Score=106.84 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=48.7
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..+..+.++++|+.|+|++|.+. +..|..+..+++|++|++++|++..++. .+..+++|++|++++|.
T Consensus 57 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc
Confidence 456666666665556666666666666666664 3334556666666666666666665543 45666666666666665
Q ss_pred c
Q 017394 80 M 80 (372)
Q Consensus 80 ~ 80 (372)
+
T Consensus 136 l 136 (276)
T 2z62_A 136 I 136 (276)
T ss_dssp C
T ss_pred c
Confidence 4
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=112.60 Aligned_cols=102 Identities=24% Similarity=0.163 Sum_probs=70.0
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..+..+.++++|+.|+|++|.+. +..|..++.+++|++|+|++|+++.+|.. +..+++|++|+|++|+
T Consensus 57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC
T ss_pred EECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC
Confidence 467777777666667778888888888888775 44456677788888888888888877765 7778888888888876
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCc
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLN 110 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n 110 (372)
+. .+|.. ..+ .++++|++|+++.|
T Consensus 136 l~-~l~~~-~~~-----~~l~~L~~L~l~~n 159 (353)
T 2z80_A 136 YK-TLGET-SLF-----SHLTKLQILRVGNM 159 (353)
T ss_dssp CS-SSCSS-CSC-----TTCTTCCEEEEEES
T ss_pred Cc-ccCch-hhh-----ccCCCCcEEECCCC
Confidence 43 23320 012 25666666666665
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.11 E-value=4.7e-10 Score=104.27 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=63.0
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+....+..+.++++|++|+|++|.+. +..+..+..+++|++|+|++|.++.+|. .+..+++|++|+|++|.
T Consensus 66 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp EECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence 578888887666566688899999999999986 3333457888899999999999887664 57888899999999887
Q ss_pred cc
Q 017394 80 ML 81 (372)
Q Consensus 80 ~l 81 (372)
+.
T Consensus 145 l~ 146 (270)
T 2o6q_A 145 LQ 146 (270)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 74
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.10 E-value=7.7e-11 Score=104.54 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=85.7
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+. .++.+..+++|+.|+|++|.+. +..|..++.+++|++|+|++|.++ ..|..+..+++|++|+|++|+
T Consensus 71 L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 71 LTINNIHAT--NYNPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp EEEESCCCS--CCGGGTTCTTCCEEEEECTTCB-GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EEccCCCCC--cchhhhcCCCCCEEEeECCccC-cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 578888653 3457999999999999999997 667889999999999999999999 578899999999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.++.+| .+. ++++|+.|+++.|.+..
T Consensus 148 ~i~~~~----~l~-----~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 148 AITDIM----PLK-----TLPELKSLNIQFDGVHD 173 (197)
T ss_dssp BCCCCG----GGG-----GCSSCCEEECTTBCCCC
T ss_pred CccccH----hhc-----CCCCCCEEECCCCCCcC
Confidence 555443 233 78888999988887765
No 75
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.10 E-value=1.7e-10 Score=119.39 Aligned_cols=101 Identities=29% Similarity=0.309 Sum_probs=68.7
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+ +|+.+ +++|+.|+|++|+|. .+| ..+++|+.|+|++|+|+.+|. +.. +|++|+|++|++
T Consensus 64 L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 64 LQLNRLNLSS-LPDNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp EECCSSCCSC-CCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCC
T ss_pred EEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcC
Confidence 5788888876 77665 378888888888885 477 457888888888888888887 554 888888888875
Q ss_pred ccCCCCCCcccccccccCC---------cccccccCcCccCC
Q 017394 81 LQNLPRLPARIQGISLDGC---------VSLETLSDVLNLNE 113 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c---------~sL~~l~~~~n~l~ 113 (372)
.+ +|..+.+|+.|+++++ ++|+.|+++.|.++
T Consensus 133 ~~-lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 133 TM-LPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT 173 (571)
T ss_dssp SC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CC-CCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCC
Confidence 54 6654444554444433 34445555544443
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.10 E-value=5.5e-11 Score=120.31 Aligned_cols=76 Identities=24% Similarity=0.189 Sum_probs=46.2
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~ 79 (372)
||+++|++. .+|..+. ++|+.|+|++|.+. +..|..+..+++|++|+|++|+++.+ |..|..+++|++|+|++|+
T Consensus 5 l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 5 VDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred EecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 456666665 4555444 56666666666664 33335566666666666666666644 4566666666666666665
Q ss_pred c
Q 017394 80 M 80 (372)
Q Consensus 80 ~ 80 (372)
+
T Consensus 81 l 81 (520)
T 2z7x_B 81 L 81 (520)
T ss_dssp C
T ss_pred e
Confidence 3
No 77
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=1.8e-10 Score=100.19 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=72.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..|.++++|+.|+|++|+|. +..|..+..+++|++|+|++|+|+.+|. .+..+++|++|+|++|+
T Consensus 35 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 689999999999999999999999999999997 4444457899999999999999998886 58999999999999998
Q ss_pred ccc
Q 017394 80 MLQ 82 (372)
Q Consensus 80 ~l~ 82 (372)
+..
T Consensus 114 ~~c 116 (170)
T 3g39_A 114 WDC 116 (170)
T ss_dssp BCT
T ss_pred CCC
Confidence 654
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.10 E-value=8.4e-11 Score=111.54 Aligned_cols=111 Identities=16% Similarity=0.077 Sum_probs=81.3
Q ss_pred CcccCCCCCCcCC----ccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcc---cch--hhhcCCCCc
Q 017394 1 MPWSSDPVALSLS----SSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT---LLA--SIYRLSSLR 71 (372)
Q Consensus 1 L~Ls~N~i~~~lP----~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~---lP~--~i~~L~~L~ 71 (372)
|+|++|.+.+..| ..+..+++|+.|+|++|.+. +..|..++.+++|++|+|++|++.. +|. .+..+++|+
T Consensus 122 L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~ 200 (310)
T 4glp_A 122 LRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQ 200 (310)
T ss_dssp CEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCC
T ss_pred EEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCC
Confidence 6788999887665 34567889999999999996 5666788899999999999998763 443 347888999
Q ss_pred EEEccccccccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394 72 GIKLEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP 117 (372)
Q Consensus 72 ~L~L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~ 117 (372)
+|+|++|++ ..+|..+..+ +.++++|++|+++.|.+....|
T Consensus 201 ~L~Ls~N~l-~~l~~~~~~l----~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 201 NLALRNTGM-ETPTGVCAAL----AAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp SCBCCSSCC-CCHHHHHHHH----HHHTCCCSSEECTTSCCCCCCC
T ss_pred EEECCCCCC-CchHHHHHHH----HhcCCCCCEEECCCCCCCccch
Confidence 999999874 2233322211 2367788888888888776543
No 79
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=1.9e-10 Score=100.61 Aligned_cols=79 Identities=20% Similarity=0.242 Sum_probs=72.1
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+..|..|.++++|+.|+|++|+|. + +|.. +..+++|++|+|++|+|+.+|.. +..+++|++|+|++|
T Consensus 38 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-A-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred EEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-c-cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 689999999999999999999999999999996 3 6665 68999999999999999999875 899999999999999
Q ss_pred ccc
Q 017394 79 KML 81 (372)
Q Consensus 79 ~~l 81 (372)
.+.
T Consensus 116 ~~~ 118 (174)
T 2r9u_A 116 PWD 118 (174)
T ss_dssp CBC
T ss_pred Ccc
Confidence 854
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.09 E-value=1.1e-10 Score=118.15 Aligned_cols=81 Identities=20% Similarity=0.207 Sum_probs=47.9
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcc---cchhhhcCCCCcEEEcccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVT---LLASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~---lP~~i~~L~~L~~L~L~~n 78 (372)
++++|.+.... .+..+++|+.|+|++|.+. +.+|..++.+++|++|+|++|+++. +|..+..+++|++|+|++|
T Consensus 308 ~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 308 TVSGTRMVHML--CPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred EcCCCcccccc--chhhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 45556554332 1145666666666666665 5566666666666666666666663 3445666666666666666
Q ss_pred ccccCCC
Q 017394 79 KMLQNLP 85 (372)
Q Consensus 79 ~~l~~lP 85 (372)
++.+.+|
T Consensus 385 ~l~~~l~ 391 (520)
T 2z7x_B 385 SVSYDEK 391 (520)
T ss_dssp CCBCCGG
T ss_pred cCCcccc
Confidence 6554344
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.09 E-value=2.4e-10 Score=101.28 Aligned_cols=98 Identities=15% Similarity=0.211 Sum_probs=80.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+. .+| .+..+++|+.|+|++|.+. .+..+..+++|++|+|++|+++ ..|..+..+++|++|+|++|.
T Consensus 49 L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 49 ITLANINVT-DLT-GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp EEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred EeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 578899987 666 6999999999999999775 4558999999999999999999 578899999999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCcc
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNL 111 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~ 111 (372)
+.+..| ..+. .+++|+.|+++.|.
T Consensus 124 i~~~~~---~~l~-----~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 124 HDDSIL---TKIN-----TLPKVNSIDLSYNG 147 (197)
T ss_dssp CBGGGH---HHHT-----TCSSCCEEECCSCT
T ss_pred cCcHhH---HHHh-----hCCCCCEEEccCCC
Confidence 765332 2232 67777777777776
No 82
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.09 E-value=7.1e-11 Score=113.91 Aligned_cols=108 Identities=28% Similarity=0.308 Sum_probs=89.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccch--hhhcCCCCcEEEccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLLA--SIYRLSSLRGIKLEE 77 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP~--~i~~L~~L~~L~L~~ 77 (372)
|+|++|.+.+..|..+.++++|++|+|++|.+. .+|.. ++.+++|++|+|++|+++.+|. .+..+++|++|++++
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS--NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred EECCCCccCccCHhhcCCCCCCCEEECCCCcCC--cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCC
Confidence 579999999988889999999999999999996 37766 8999999999999999999997 789999999999999
Q ss_pred cccccCCCCCCcccccccccCCcccccccCcCccCCCCCC
Q 017394 78 CKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEHQIP 117 (372)
Q Consensus 78 n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~~~~ 117 (372)
|..++.++. ..+ .++++|+.|+++.|.+....+
T Consensus 159 n~~~~~~~~--~~~-----~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 159 MDTFTKIQR--KDF-----AGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp SSSCCEECT--TTT-----TTCCEEEEEEEEETTCCEECT
T ss_pred CccccccCH--HHc-----cCCCCCCEEECCCCCcCccCH
Confidence 964544331 223 377888888888887765433
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.09 E-value=1.3e-10 Score=119.18 Aligned_cols=103 Identities=18% Similarity=0.091 Sum_probs=52.8
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+..|..|.++++|++|+|++|++. +..|..|+.+++|++|+|++|+++.+|.. .+++|++|+|++|++
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDF 133 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCc
Confidence 345555555555555555555555555555554 33344555555555555555555555544 555555555555553
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNE 113 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~ 113 (372)
.+ +| .|..+. ++++|++|+++.|.+.
T Consensus 134 ~~-l~-~p~~~~-----~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 134 DV-LP-VCKEFG-----NLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SB-CC-CCGGGG-----GCTTCCEEEEECSBCC
T ss_pred cc-cC-chHhhc-----ccCcccEEecCCCccc
Confidence 22 11 112222 4555555555555544
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.08 E-value=1.6e-10 Score=118.44 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=88.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n 78 (372)
|+|++|.|.+..|..|.+|++|++|+|++|+|. .+|. .|.+|++|++|+|++|+++.+|. .|+++++|++|+|++|
T Consensus 81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~--~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred EECCCCcCCCcChhHhcCCCCCCEEEccCCcCC--CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC
Confidence 689999999988889999999999999999996 3664 68999999999999999998885 5899999999999999
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+.. ++ +|..+. ++++|++|.++.|.++.
T Consensus 159 ~l~~-~~-~~~~~~-----~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 159 LIQS-FK-LPEYFS-----NLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCC-CC-CCGGGG-----GCTTCCEEECCSSCCCE
T ss_pred cccc-CC-Cchhhc-----cchhhhhhcccCccccc
Confidence 8543 11 233333 77889999999887765
No 85
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.08 E-value=1.7e-10 Score=112.70 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=70.7
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+..|..+.++++|+.|+|++|.+. .+|.. ++.+++|++|+|++|+++.++ ..+..+++|+.|++++|
T Consensus 98 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 98 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred EECCCCCCCcCCHHHhcCCCCCCEEECCCCccC--cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence 579999999988888999999999999999995 47776 589999999999999999665 56899999999999999
Q ss_pred cccc
Q 017394 79 KMLQ 82 (372)
Q Consensus 79 ~~l~ 82 (372)
++.+
T Consensus 176 ~l~~ 179 (390)
T 3o6n_A 176 RLTH 179 (390)
T ss_dssp CCSB
T ss_pred cCCc
Confidence 8543
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.08 E-value=1.1e-10 Score=120.23 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=52.2
Q ss_pred CcccCCCCCCcC--CccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-c-hhhhcCCCCcEEEcc
Q 017394 1 MPWSSDPVALSL--SSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-L-ASIYRLSSLRGIKLE 76 (372)
Q Consensus 1 L~Ls~N~i~~~l--P~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P-~~i~~L~~L~~L~L~ 76 (372)
|+|++|.+.+.. |..+.++++|+.|+|++|.+. +..|..+..+++|+.|+|++|.++.. | ..+..+++|+.|+++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 456667666554 556667777777777777765 45566666677777777777766632 2 236666677777777
Q ss_pred ccccccC
Q 017394 77 ECKMLQN 83 (372)
Q Consensus 77 ~n~~l~~ 83 (372)
+|.+.+.
T Consensus 434 ~n~l~~~ 440 (606)
T 3t6q_A 434 HSLLDIS 440 (606)
T ss_dssp TCCCBTT
T ss_pred CCccCCc
Confidence 6665443
No 87
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=5.2e-11 Score=100.56 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=80.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc--hhhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL--ASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP--~~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+. +.+.++++|+.|+|++|.+. +.+|..++.+++|++|+|++|.++.+| ..+..+++|++|++++|
T Consensus 47 L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 47 LSTINVGLTSI--ANLPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp EECTTSCCCCC--TTCCCCTTCCEEECCSSCCC-SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred EECcCCCCCCc--hhhhcCCCCCEEECCCCccc-chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 57899999877 77999999999999999997 668888888999999999999999876 88999999999999999
Q ss_pred ccccCCCCCCcccccccccCCcccccccCc
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDV 108 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~ 108 (372)
.+.+ +|..+.. .+..+++|+.|++.
T Consensus 124 ~l~~-~~~~~~~----~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 124 EVTN-LNDYREN----VFKLLPQLTYLDGY 148 (149)
T ss_dssp GGGG-STTHHHH----HHHHCTTCCEETTB
T ss_pred cccc-hHHHHHH----HHHHCCCcccccCC
Confidence 8554 3321101 12266777777653
No 88
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.07 E-value=4.2e-10 Score=107.30 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=100.8
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..+.++++|+.|+|++|.+. .+|..+. ++|+.|++++|.++.+|. .+..+++|+.|++++|.
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLK--ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS--BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred EECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC--ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence 579999999999999999999999999999995 5887765 788889998888886664 57888888888888887
Q ss_pred ccc--CCCCC---CcccccccccCC----------cccccccCcCccCCCCCCccccccccccccc----------ccch
Q 017394 80 MLQ--NLPRL---PARIQGISLDGC----------VSLETLSDVLNLNEHQIPNIHVHCVDCLKLA----------GNYD 134 (372)
Q Consensus 80 ~l~--~lP~l---p~~l~~L~~~~c----------~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~----------~~~~ 134 (372)
+.. ..+.. ...++.|++.++ ++|+.|+++.|.+....+. .+.++.+|. +..+
T Consensus 157 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA---SLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG---GGTTCTTCCEEECCSSCCCEECT
T ss_pred CCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH---HhcCCCCCCEEECCCCcCceeCh
Confidence 532 22221 123444444433 4667777777766543222 222222222 2222
Q ss_pred HHHHHHHHHhhcCCCCCCCceeecCCCCCCcccc
Q 017394 135 LALSLLKEYIKNSECSWRDFCIVVPGSEIPEWFE 168 (372)
Q Consensus 135 ~~l~~l~~~l~~~~~~~~~~~~~lPg~~IP~wf~ 168 (372)
..+..+.+ |+.+.++.|.+. .+|.++.
T Consensus 234 ~~~~~l~~-L~~L~L~~N~l~------~lp~~l~ 260 (330)
T 1xku_A 234 GSLANTPH-LRELHLNNNKLV------KVPGGLA 260 (330)
T ss_dssp TTGGGSTT-CCEEECCSSCCS------SCCTTTT
T ss_pred hhccCCCC-CCEEECCCCcCc------cCChhhc
Confidence 23433433 667777777765 4555554
No 89
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.06 E-value=2.4e-10 Score=111.04 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=87.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.|.+..|..|.++++|+.|+|++|+|. +..+..|..+++|+.|+|++|+++.+ |..|..+++|+.|+|++|+
T Consensus 69 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 69 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence 689999999988889999999999999999996 44445689999999999999999966 5789999999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.. +| ..+- -.+.++++|+.|+++.|.+..
T Consensus 148 l~~-l~---~~~~-~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 148 ISR-FP---VELI-KDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCS-CC---GGGT-C----CTTCCEEECCSSCCCC
T ss_pred CCe-eC---HHHh-cCcccCCcCCEEECCCCCCCc
Confidence 543 33 2220 011367889999999988765
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.05 E-value=3.1e-10 Score=117.35 Aligned_cols=100 Identities=27% Similarity=0.334 Sum_probs=81.1
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+. .+| ..+++|+.|+|++|+|+ + +|. +.. +|+.|+|++|+|+.+|. .+++|+.|+|++|++
T Consensus 85 L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~-ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l 152 (571)
T 3cvr_A 85 LEITQNALI-SLP---ELPASLEYLDACDNRLS-T-LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQL 152 (571)
T ss_dssp EECCSSCCS-CCC---CCCTTCCEEECCSSCCS-C-CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC
T ss_pred EECcCCCCc-ccc---cccCCCCEEEccCCCCC-C-cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCcc
Confidence 578999987 677 45789999999999996 3 888 665 89999999999999887 688999999999986
Q ss_pred ccCCCCCCcccccccccCCc---------ccccccCcCccCC
Q 017394 81 LQNLPRLPARIQGISLDGCV---------SLETLSDVLNLNE 113 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~---------sL~~l~~~~n~l~ 113 (372)
.+ +|..+.+|+.|+++++. +|+.|+++.|.++
T Consensus 153 ~~-lp~~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 153 TM-LPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE 193 (571)
T ss_dssp SC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred Cc-CCCcCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCC
Confidence 54 78777788888887763 6777777777766
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.04 E-value=6.9e-10 Score=104.73 Aligned_cols=104 Identities=28% Similarity=0.308 Sum_probs=84.1
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+. .+|..+.++++|+.|+|++|++. +..|..|..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 578999986 77888999999999999999996 44446799999999999999999988864 6789999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+. .+|. .. +.++++|+.|+++.|.++.
T Consensus 160 l~-~l~~---~~----~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 160 LT-ELPA---GL----LNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CS-CCCT---TT----TTTCTTCCEEECCSSCCCC
T ss_pred CC-ccCH---HH----hcCcCCCCEEECCCCcCCc
Confidence 54 3332 21 1267788888888887764
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.04 E-value=1.2e-10 Score=119.27 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=50.3
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc---hhhhcCCCCcEEEcccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL---ASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP---~~i~~L~~L~~L~L~~n 78 (372)
++++|.+..... ...+++|+.|+|++|.+. +.+|..++.+++|++|+|++|+++.+| ..+..+++|++|+|++|
T Consensus 337 ~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 337 SISDTPFIHMVC--PPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp EEESSCCCCCCC--CSSCCCCCEEECCSSCCC-TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred EccCCCcccccC--ccCCCCceEEECCCCccc-cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 455665533221 146667777777777776 566666777777777777777766443 45666777777777777
Q ss_pred ccccCCC
Q 017394 79 KMLQNLP 85 (372)
Q Consensus 79 ~~l~~lP 85 (372)
++.+.+|
T Consensus 414 ~l~~~~~ 420 (562)
T 3a79_B 414 SLNSHAY 420 (562)
T ss_dssp CCBSCCS
T ss_pred cCCCccC
Confidence 6554344
No 93
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=3.3e-10 Score=117.13 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=74.2
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc--chhhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL--LASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l--P~~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+. .+|..+++|++|+.|+|++|.++ + +| .++.|++|+.|+|++|+|+.+ |..|+.+++|+.|+|++|
T Consensus 468 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred eecCccccc-ccchhhhcCCCCCEEECCCCCCC-C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 689999998 88999999999999999999997 3 88 899999999999999999977 899999999999999999
Q ss_pred ccccCCC
Q 017394 79 KMLQNLP 85 (372)
Q Consensus 79 ~~l~~lP 85 (372)
++.+..|
T Consensus 544 ~l~~~~~ 550 (567)
T 1dce_A 544 SLCQEEG 550 (567)
T ss_dssp GGGGSSS
T ss_pred cCCCCcc
Confidence 9765433
No 94
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.02 E-value=1.8e-10 Score=109.62 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=44.1
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKML 81 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l 81 (372)
+|++|.+.+..|..+.++++|+.|+|++|.+. + +++ +..+++|++|+|++|+++.+|. +++|++|++++|++.
T Consensus 40 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~-~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~ 112 (317)
T 3o53_A 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLY-E-TLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNIS 112 (317)
T ss_dssp ECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE-E-EEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCS
T ss_pred ECcCCccCcCCHHHhhCCCcCCEEECCCCcCC-c-chh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccC
Confidence 44455554444444455555555555555543 2 222 4445555555555554444431 244444444444432
Q ss_pred cCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 82 QNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 82 ~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+..+ ..+++|+.|.++.|.++.
T Consensus 113 ~~~~-----------~~~~~L~~L~l~~N~l~~ 134 (317)
T 3o53_A 113 RVSC-----------SRGQGKKNIYLANNKITM 134 (317)
T ss_dssp EEEE-----------CCCSSCEEEECCSSCCCS
T ss_pred CcCc-----------cccCCCCEEECCCCCCCC
Confidence 2111 123456666666665554
No 95
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.02 E-value=1.6e-09 Score=94.12 Aligned_cols=102 Identities=24% Similarity=0.271 Sum_probs=78.7
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchh-hhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLAS-IYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~-i~~L~~L~~L~L~~n~ 79 (372)
|++++|++. .+|..+ .++|+.|+|++|++. +..+..+..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 12 l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 12 IRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 457778875 455444 479999999999996 44445579999999999999999988864 6899999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.+ +|. ..+ .++++|+.|++..|.+..
T Consensus 88 l~~-~~~--~~~-----~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 88 LQS-LPN--GVF-----DKLTQLKELALDTNQLKS 114 (177)
T ss_dssp CCC-CCT--TTT-----TTCTTCCEEECCSSCCSC
T ss_pred ccc-cCH--HHh-----hCCcccCEEECcCCcceE
Confidence 653 221 112 267788888888887765
No 96
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.01 E-value=3.5e-10 Score=98.43 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=81.4
Q ss_pred CcccCCCCCCcCCccccCCC-CCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhh-hcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLC-SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASI-YRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i-~~L~~L~~L~L~~n 78 (372)
|+|++|.+.. +|. +..+. +|+.|+|++|.+. + + ..++.+++|++|+|++|.++.+|..+ ..+++|++|+|++|
T Consensus 24 L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~-~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 24 LDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIR-K-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp EECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCC-E-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred EEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCC-c-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC
Confidence 5789999874 454 66655 9999999999996 3 5 67999999999999999999888655 89999999999999
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
++ +.+|.+. .+ .++++|+.|.+..|.+..
T Consensus 99 ~i-~~~~~~~-~l-----~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 99 SL-VELGDLD-PL-----ASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp CC-CCGGGGG-GG-----GGCTTCCEEECCSSGGGG
T ss_pred cC-CcchhhH-hh-----hcCCCCCEEEecCCCCCC
Confidence 85 4344311 23 378899999999888764
No 97
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.00 E-value=1.9e-10 Score=117.15 Aligned_cols=104 Identities=23% Similarity=0.141 Sum_probs=64.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+..+ .+..+++|+.|+|++|.+. +..| ..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|
T Consensus 378 L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 378 LDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp EECCSCSEEEEEE-EEETCTTCCEEECTTSEEE-SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EECCCCccccccc-cccccCCCCEEEccCCccc-cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 4567777655443 3777777777777777775 3333 35667777777777777777 45566777777777777777
Q ss_pred ccc-cCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KML-QNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l-~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+. +.+|. .+. ++++|+.|+++.|.++.
T Consensus 456 ~l~~~~~p~---~~~-----~l~~L~~L~l~~n~l~~ 484 (570)
T 2z63_A 456 SFQENFLPD---IFT-----ELRNLTFLDLSQCQLEQ 484 (570)
T ss_dssp EEGGGEECS---CCT-----TCTTCCEEECTTSCCCE
T ss_pred cCccccchh---hhh-----cccCCCEEECCCCcccc
Confidence 654 33442 222 45555555555555544
No 98
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.99 E-value=2.9e-10 Score=98.90 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=83.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCccc-CCCCCCCEEeccCCCCcccch--hhhcCCCCcEEEccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSI-GDLCSLEELHLSGNNFVTLLA--SIYRLSSLRGIKLEE 77 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i-~~L~~L~~L~Ls~N~l~~lP~--~i~~L~~L~~L~L~~ 77 (372)
|+|++|.+.+. +.+..+++|+.|+|++|.+. .+|..+ ..+++|++|+|++|.++.+|. .+..+++|+.|++++
T Consensus 47 L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 47 IDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC--RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp EECCSSCCCEE--CCCCCCSSCCEEECCSSCCC--EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred EECCCCCCCcc--cccccCCCCCEEECCCCccc--ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecC
Confidence 68999999876 67999999999999999996 377655 899999999999999999997 899999999999999
Q ss_pred cccccCCCCCCcccccccccCCcccccccCcCccC
Q 017394 78 CKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLN 112 (372)
Q Consensus 78 n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l 112 (372)
|.+. .+|. . +...+..+++|+.|++..|..
T Consensus 123 N~i~-~~~~---~-~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 123 NPVT-NKKH---Y-RLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SGGG-GSTT---H-HHHHHHHCTTCSEETTEECCH
T ss_pred CCCC-CcHh---H-HHHHHHHCCccceeCCCcCCH
Confidence 9864 3332 1 001133778888888776644
No 99
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.98 E-value=1.3e-09 Score=103.45 Aligned_cols=74 Identities=20% Similarity=0.334 Sum_probs=50.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|++++|.+.. +| .+..+++|+.|+|++|.+. .+|. +..+++|++|+|++|.++.+| .+..+++|+.|+|++|.+
T Consensus 46 L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~--~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 46 LSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT--DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp EECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC--CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCC
T ss_pred EEeeCCCccC-ch-hhhccCCCCEEEccCCcCC--CChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCC
Confidence 4566666644 33 4677777777777777774 2555 777777777777777777665 567777777777777764
No 100
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.98 E-value=2.3e-09 Score=111.94 Aligned_cols=80 Identities=23% Similarity=0.224 Sum_probs=45.1
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCC-CCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGE-GAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~-~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+..|..+..+++|+.|++++|.+.. +.+|..+..+++|+.|+|++|+++.+|. .+..+++|++|+|++|
T Consensus 435 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514 (680)
T ss_dssp EECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC
Confidence 3566666665555555556666666666655421 2345555556666666666666554443 3555556666666655
Q ss_pred cc
Q 017394 79 KM 80 (372)
Q Consensus 79 ~~ 80 (372)
++
T Consensus 515 ~l 516 (680)
T 1ziw_A 515 NL 516 (680)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.98 E-value=2.4e-09 Score=107.43 Aligned_cols=105 Identities=23% Similarity=0.253 Sum_probs=70.6
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+ +| .++++++|++|++++|++. .+|..+ .+|++|++++|+++.+| .++.+++|++|++++|++
T Consensus 136 L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~--~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 136 LGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK--KLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp EECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS--CCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred EECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc--ccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC
Confidence 4567777765 55 4777777777777777775 266543 47777777777777777 577888888888888875
Q ss_pred ccCCCCCCcccccccccC-----------CcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDG-----------CVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~-----------c~sL~~l~~~~n~l~~ 114 (372)
.+ +|..+.+++.|++++ +++|+.|+++.|.++.
T Consensus 208 ~~-l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 208 KK-LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp SS-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred Cc-CCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence 43 777766676665544 3455555555555543
No 102
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.96 E-value=1.4e-09 Score=108.73 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=83.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCccc-chhhhcCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTL-LASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~l-P~~i~~L~~L~~L~L~~n 78 (372)
|+|++|.+.+..|..|.++++|+.|+|++|++. .+|. .+.++++|++|+|++|+++.+ |..+..+++|+.|+|++|
T Consensus 61 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK--LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred EECCCCccCEeChhhhhCCccCCEEECCCCcCC--ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence 578999999988999999999999999999996 3665 578999999999999999954 567889999999999998
Q ss_pred ccccCCCCCC---cccccccc-------------cCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLP---ARIQGISL-------------DGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp---~~l~~L~~-------------~~c~sL~~l~~~~n~l~~ 114 (372)
.+.+..|... .+|+.|++ .++++|+.|.+..|.+..
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 8654333211 23444432 345566666666665543
No 103
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.96 E-value=1.6e-09 Score=116.55 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=46.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+.+..|..+.++++|+.|+|++|.+. +..|..+..+++|+.|+|++|++..+|. .+..+++|++|+|++|.
T Consensus 295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp EEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred EECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 345566665555555666666666666666664 4445556666666666666666664443 45566666666666665
No 104
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=1.7e-09 Score=103.87 Aligned_cols=101 Identities=20% Similarity=0.126 Sum_probs=79.0
Q ss_pred cccCC-CCCCcCCccccCCCCCCEEeecC-CCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEcccc
Q 017394 2 PWSSD-PVALSLSSSLSGLCSLTKLDISY-CDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 2 ~Ls~N-~i~~~lP~si~~L~~L~~L~Ls~-n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n 78 (372)
+++++ .+. .+|. |..+++|+.|+|++ |.|. +..|..|+.|++|+.|+|++|+|+.+| ..|..|++|++|+|++|
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 56676 665 4788 99999999999996 9996 444467999999999999999999666 57899999999999999
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
++.+ +| ..+. ....|+.|.+..|.+..
T Consensus 91 ~l~~-~~---~~~~-----~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALES-LS---WKTV-----QGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSC-CC---STTT-----CSCCCCEEECCSSCCCC
T ss_pred ccce-eC---HHHc-----ccCCceEEEeeCCCccC
Confidence 8653 33 2221 12228888888887654
No 105
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.95 E-value=1.3e-09 Score=96.77 Aligned_cols=104 Identities=20% Similarity=0.183 Sum_probs=87.8
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~ 79 (372)
|+|++|.+. .+|..+.++++|+.|+|++|.++ +..|..|..+++|+.|+|++|+++.+|. .|..+++|++|+|++|+
T Consensus 36 L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp EECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence 578999996 77889999999999999999997 5556679999999999999999997774 79999999999999998
Q ss_pred cccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 80 MLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 80 ~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.. +|. ..+ .++++|+.|.+..|.+..
T Consensus 114 l~~-~~~--~~~-----~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 114 ISV-VPE--GAF-----NDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCB-CCT--TTT-----TTCTTCCEEECCSSCEEC
T ss_pred CCe-eCh--hhh-----hcCccccEEEeCCCCeec
Confidence 543 332 112 367899999999998765
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.95 E-value=1.7e-10 Score=116.94 Aligned_cols=100 Identities=12% Similarity=-0.015 Sum_probs=70.2
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhh-cCCCCcEEEcccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIY-RLSSLRGIKLEEC 78 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~-~L~~L~~L~L~~n 78 (372)
|+|++|.+.+..+. .+++|+.|+|++|.++ +..|..++.+++|+.|+|++|.++ ..|..+. .+++|+.|+|++|
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCC-SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCC-CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 46777777766543 4577888888888886 666777888888888888888888 4556665 6788888888888
Q ss_pred ccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 79 KMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 79 ~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+.+. |. . ..+++|+.|+++.|.+++
T Consensus 180 ~l~~~-~~----~-----~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 180 FIYDV-KG----Q-----VVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp CCCEE-EC----C-----CCCTTCCEEECCSSCCCE
T ss_pred ccccc-cc----c-----ccCCCCCEEECCCCCCCC
Confidence 75432 21 1 146677777777776655
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.95 E-value=2.8e-09 Score=106.97 Aligned_cols=105 Identities=22% Similarity=0.236 Sum_probs=70.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+ +| .++++++|+.|++++|.+. .+|... ++|+.|++++|.++.+| .+..+++|++|++++|++
T Consensus 178 L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~--~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 178 IAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK--KLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp EECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS--SCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred EECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC--cCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcC
Confidence 4566666655 44 4777777777777777774 255432 46777777777777777 477888888888888875
Q ss_pred ccCCCCCCcccccccccCC---------cccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGC---------VSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c---------~sL~~l~~~~n~l~~ 114 (372)
. .+|..+.+++.|+++++ ++|+.|+++.|.+++
T Consensus 250 ~-~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 250 K-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 291 (454)
T ss_dssp S-SCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE
T ss_pred C-cccccccccCEEECCCCcccccCcccCcCCEEECcCCccCc
Confidence 4 47776667777766544 345556666555544
No 108
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.91 E-value=3.1e-10 Score=108.06 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=40.0
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCccc-chhh-hcCCCCcEEEccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTL-LASI-YRLSSLRGIKLEECK 79 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i-~~L~~L~~L~L~~n~ 79 (372)
+|++|.+.+..+. .+++|+.|+|++|.+. +..|..++.+++|++|+|++|.++.+ |..+ ..+++|++|+|++|.
T Consensus 105 ~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp ECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 4555555444332 2455666666666664 33344555566666666666666633 2333 345666666666665
Q ss_pred c
Q 017394 80 M 80 (372)
Q Consensus 80 ~ 80 (372)
+
T Consensus 181 l 181 (317)
T 3o53_A 181 I 181 (317)
T ss_dssp C
T ss_pred C
Confidence 3
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.89 E-value=5.1e-09 Score=108.98 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=51.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+... | .+..|++|+.|+|++|.+. + +|. +..+++|+.|+|++|.+..+| .+..+++|+.|+|++|.+
T Consensus 48 L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~-~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l 121 (605)
T 1m9s_A 48 IIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-D-IKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGI 121 (605)
T ss_dssp CBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-C-CGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCC
T ss_pred EECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-C-Chh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCC
Confidence 46677776443 3 4677777777777777775 2 444 777777777777777777666 567777777777777764
Q ss_pred c
Q 017394 81 L 81 (372)
Q Consensus 81 l 81 (372)
.
T Consensus 122 ~ 122 (605)
T 1m9s_A 122 S 122 (605)
T ss_dssp C
T ss_pred C
Confidence 3
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.89 E-value=4.3e-09 Score=99.19 Aligned_cols=98 Identities=20% Similarity=0.176 Sum_probs=70.1
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|++++|.+... | .+..+++|+.|+|++|++.. ++. +..+++|++|+|++|.++.+|. +..+++|++|+|++|.+
T Consensus 51 L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i 124 (291)
T 1h6t_A 51 IIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGI 124 (291)
T ss_dssp EECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCC
T ss_pred EEccCCCcccC-h-hHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcC
Confidence 46777777544 3 47788888888888888852 555 8888888888888888888774 88888888888888874
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.. ++ .+ .++++|+.|+++.|.++.
T Consensus 125 ~~-~~----~l-----~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 125 SD-IN----GL-----VHLPQLESLYLGNNKITD 148 (291)
T ss_dssp CC-CG----GG-----GGCTTCCEEECCSSCCCC
T ss_pred CC-Ch----hh-----cCCCCCCEEEccCCcCCc
Confidence 43 22 12 256666666666665544
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.87 E-value=2.2e-09 Score=99.74 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=54.3
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKML 81 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l 81 (372)
+|+.|.+.... .+..+++|+.|+|++|.+. .+| .+..+++|+.|+|++|+++.+|. +..+++|++|+|++|++.
T Consensus 25 ~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 25 NLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ--SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HHTCSCTTSEE--CHHHHTTCSEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS
T ss_pred HhcCCCccccc--chhhcCcCcEEECcCCCcc--cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC
Confidence 45666665432 4667777788888887774 366 57777778888888887777776 777777888888877743
Q ss_pred cCCCC
Q 017394 82 QNLPR 86 (372)
Q Consensus 82 ~~lP~ 86 (372)
+ +|.
T Consensus 99 ~-l~~ 102 (263)
T 1xeu_A 99 N-LNG 102 (263)
T ss_dssp C-CTT
T ss_pred C-cCc
Confidence 3 443
No 112
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.87 E-value=6.7e-09 Score=108.44 Aligned_cols=102 Identities=23% Similarity=0.274 Sum_probs=83.4
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|++++|.+. .+|..+. ++|+.|+|++|++. .+|. .+++|++|+|++|+++.+|. .+++|++|+|++|++
T Consensus 45 L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 45 LNVGESGLT-TLPDCLP--AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL 113 (622)
T ss_dssp EECCSSCCS-CCCSCCC--TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC
T ss_pred EEecCCCcC-ccChhhC--CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC
Confidence 578889986 7777665 79999999999995 4887 57899999999999999997 778999999999984
Q ss_pred ccCCCCCCcccccccccCC---------cccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGC---------VSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c---------~sL~~l~~~~n~l~~ 114 (372)
..+|..+.+|+.|+++++ ++|++|+++.|.++.
T Consensus 114 -~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 114 -THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS 155 (622)
T ss_dssp -CCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred -CCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCC
Confidence 447777778888877665 678888888887665
No 113
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.87 E-value=7.4e-09 Score=98.96 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=36.2
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~ 79 (372)
++++|.+.. +| .+..+++|++|+|++|.+. .+|. +..+++|++|+|++|.++.+| .+..+++|++|++++|.
T Consensus 50 ~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~--~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 50 VVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT--DISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN 121 (347)
T ss_dssp ECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC
T ss_pred EEeCCcccc-ch-hhhhcCCccEEEccCCccc--cchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc
Confidence 344444432 22 2455555555555555553 2333 555555555555555555544 35555555555555554
No 114
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=2.4e-09 Score=102.71 Aligned_cols=80 Identities=21% Similarity=0.120 Sum_probs=71.1
Q ss_pred CcccC-CCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394 1 MPWSS-DPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 1 L~Ls~-N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~ 79 (372)
|+|++ |.+.+..|..|.+|++|+.|+|++|+|+ +..|..|..|++|+.|+|++|+|+.+|..+.....|+.|+|.+|+
T Consensus 36 L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp EECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred EEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence 68996 9999988899999999999999999997 666778999999999999999999999766555559999999998
Q ss_pred cc
Q 017394 80 ML 81 (372)
Q Consensus 80 ~l 81 (372)
+.
T Consensus 115 ~~ 116 (347)
T 2ifg_A 115 LH 116 (347)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.85 E-value=1.5e-11 Score=109.18 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=85.3
Q ss_pred CcccCCCCCCcCCc------cccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEE
Q 017394 1 MPWSSDPVALSLSS------SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIK 74 (372)
Q Consensus 1 L~Ls~N~i~~~lP~------si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~ 74 (372)
++|+.+.+.+.+|+ .+..+++|+.|+|++|.+.. +| .+..+++|++|+|++|.++.+|..+..+++|++|+
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence 46788888888887 89999999999999999963 88 89999999999999999999999888899999999
Q ss_pred ccccccccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 75 LEECKMLQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 75 L~~n~~l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
|++|++.+ +| .+ .++++|+.|++..|.+..
T Consensus 100 L~~N~l~~-l~----~~-----~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 100 ISYNQIAS-LS----GI-----EKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp EEEEECCC-HH----HH-----HHHHHSSEEEESEEECCC
T ss_pred CcCCcCCc-CC----cc-----ccCCCCCEEECCCCcCCc
Confidence 99998543 33 23 367788888888887654
No 116
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.85 E-value=2.3e-10 Score=108.94 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=34.3
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCC-CCcccCCCCCCCEEeccCCCCc-ccchhhhcCCCCcEEEcccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGA-IPSSIGDLCSLEELHLSGNNFV-TLLASIYRLSSLRGIKLEEC 78 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~-lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~~L~~L~~L~L~~n 78 (372)
+|++|.+.+..|. +..+++|+.|+|++|.+. +. +|..+..+++|+.|+|++|.++ ..|..+..+++|++|+|++|
T Consensus 76 ~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 76 RCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE-VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp ECTTCEECSCCCS-CCCCBCCCEEECTTCEEC-HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred EcCCccccccchh-hccCCCCCEEEccCCCcC-HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 3444444444333 334455555555555443 22 4444444444444444444444 34444444444444444444
No 117
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.85 E-value=4.6e-09 Score=109.67 Aligned_cols=104 Identities=21% Similarity=0.194 Sum_probs=54.7
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhh---------------
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIY--------------- 65 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~--------------- 65 (372)
|+|++|.+. .+|. .+++|+.|+|++|+++ .+|. .+++|++|+|++|+++.+|..+.
T Consensus 66 L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~l 136 (622)
T 3g06_A 66 LVIPDNNLT-SLPA---LPPELRTLEVSGNQLT--SLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL 136 (622)
T ss_dssp EEECSCCCS-CCCC---CCTTCCEEEECSCCCS--CCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCC
T ss_pred EEecCCCCC-CCCC---cCCCCCEEEcCCCcCC--cCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcC
Confidence 456666665 3444 4566666666666664 3555 44555555555555555554100
Q ss_pred --cCCCCcEEEccccccccCCCCCCcccccccccCC---------cccccccCcCccCCC
Q 017394 66 --RLSSLRGIKLEECKMLQNLPRLPARIQGISLDGC---------VSLETLSDVLNLNEH 114 (372)
Q Consensus 66 --~L~~L~~L~L~~n~~l~~lP~lp~~l~~L~~~~c---------~sL~~l~~~~n~l~~ 114 (372)
.+++|++|+|++|++ ..+|..+.+++.|++.++ ++|+.|+++.|.++.
T Consensus 137 p~~l~~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 137 PVLPPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp CCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred CCCCCCCCEEECcCCcC-CCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC
Confidence 124555555555543 234555555555544333 556666666665543
No 118
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.84 E-value=9e-09 Score=96.99 Aligned_cols=98 Identities=20% Similarity=0.213 Sum_probs=82.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+..| +.++++|+.|+|++|.+.. +|. +..+++|+.|+|++|+++.+| .+..+++|+.|++++|++
T Consensus 73 L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 73 LFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI 146 (291)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCC
T ss_pred EEccCCccCCCcc--cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcC
Confidence 5799999977544 9999999999999999963 554 999999999999999999886 789999999999999985
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+ ++ .+ ..+++|+.|+++.|.+..
T Consensus 147 ~~-~~----~l-----~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 147 TD-IT----VL-----SRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp CC-CG----GG-----GGCTTCSEEECCSSCCCC
T ss_pred Cc-ch----hh-----ccCCCCCEEEccCCcccc
Confidence 43 22 23 378889999998887765
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.82 E-value=1.4e-08 Score=94.31 Aligned_cols=97 Identities=20% Similarity=0.202 Sum_probs=67.3
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.. +| .+..+++|+.|+|++|.+. .+|. +..+++|+.|+|++|+++.+|.... ++|+.|+|++|.+
T Consensus 46 L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~--~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l 118 (263)
T 1xeu_A 46 FNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS--DLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNEL 118 (263)
T ss_dssp EECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC--CCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCC
T ss_pred EECcCCCccc-ch-HHhhCCCCCEEECCCCccC--CChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCcc
Confidence 4677887754 44 5778888888888888885 3665 8888888888888888887775333 7888888888874
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+ +|. + .++++|+.|+++.|.++.
T Consensus 119 ~~-~~~----l-----~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 119 RD-TDS----L-----IHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp SB-SGG----G-----TTCTTCCEEECTTSCCCB
T ss_pred CC-Chh----h-----cCcccccEEECCCCcCCC
Confidence 43 221 2 255666666666665544
No 120
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.82 E-value=1e-08 Score=97.32 Aligned_cols=98 Identities=20% Similarity=0.324 Sum_probs=77.1
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+. +.+..+++|+.|+|++|.+.. +|. +..+++|+.|+|++|.++.+|. +..+++|++|+|++|++
T Consensus 90 L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 90 LELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp EECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred EEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcC
Confidence 57899998764 468999999999999999963 665 8999999999999999998886 88999999999999975
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.. ++. + .++++|+.|+++.|.+..
T Consensus 164 ~~-~~~----l-----~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 164 SD-LTP----L-----ANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CC-CGG----G-----TTCTTCCEEECCSSCCCC
T ss_pred CC-Chh----h-----cCCCCCCEEECCCCccCc
Confidence 43 222 2 256666666666666554
No 121
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.80 E-value=1.8e-08 Score=100.83 Aligned_cols=98 Identities=19% Similarity=0.334 Sum_probs=68.8
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+. +.+..+++|+.|+|++|.+. + ++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|++
T Consensus 226 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 226 LSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-N-LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 299 (466)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-C-CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC
T ss_pred EECCCCCcccc--hhhhcCCCCCEEECCCCccc-c-chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcc
Confidence 46778887653 45778888888888888886 3 333 7788888888888888887775 77888888888888875
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+ ++. +..+++|+.|++..|.+..
T Consensus 300 ~~-~~~---------~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 300 ED-ISP---------ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp SC-CGG---------GGGCTTCSEEECCSSCCSC
T ss_pred cC-chh---------hcCCCCCCEEECcCCcCCC
Confidence 43 221 2255566666666665544
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.79 E-value=5.3e-10 Score=106.40 Aligned_cols=110 Identities=25% Similarity=0.357 Sum_probs=72.8
Q ss_pred CcccCCCCCCc-CCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCC-CCc--ccchhhhcCCCCcEEEcc
Q 017394 1 MPWSSDPVALS-LSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGN-NFV--TLLASIYRLSSLRGIKLE 76 (372)
Q Consensus 1 L~Ls~N~i~~~-lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N-~l~--~lP~~i~~L~~L~~L~L~ 76 (372)
|+|++|.+.+. +|..+..+++|+.|+|++|.+. +.+|..++.+++|++|+|++| .++ .+|..+..+++|++|+|+
T Consensus 98 L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 98 MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp EECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred EEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC-HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 46777777655 6667777777888888877775 566777777777777777777 566 367667777777777777
Q ss_pred cc-ccccC-CC----CCCcccccccccC----------------CcccccccCcCcc
Q 017394 77 EC-KMLQN-LP----RLPARIQGISLDG----------------CVSLETLSDVLNL 111 (372)
Q Consensus 77 ~n-~~l~~-lP----~lp~~l~~L~~~~----------------c~sL~~l~~~~n~ 111 (372)
+| .+... ++ .+|.+|+.|++++ |++|+.|++..|.
T Consensus 177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 77 43321 12 1222455554443 4567777777776
No 123
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.78 E-value=1.7e-08 Score=96.38 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=38.9
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~ 79 (372)
++++|.+....+ +..+++|+.|++++|.+. .++. +..+++|+.|++++|.+..++. +..+++|+.|++++|+
T Consensus 161 ~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIE--DISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK 232 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCSEEECTTSCCC--CCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred EecCCCcCCchh--hccCCCCCEEEccCCccc--cccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc
Confidence 455565544332 556666666666666663 2433 5555555555555555554443 4555555555555554
No 124
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.78 E-value=1.4e-08 Score=101.54 Aligned_cols=107 Identities=20% Similarity=0.295 Sum_probs=64.7
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+..| +.++++|++|+|++|.+. + +|. ++.+++|++|+|++|.++.+|. +..+++|++|++++|.+
T Consensus 73 L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l 146 (466)
T 1o6v_A 73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIA-D-ITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTI 146 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-C-CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEE
T ss_pred EECCCCccCCchh--hhccccCCEEECCCCccc-c-Chh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCcc
Confidence 4566666655433 667777777777777764 2 444 6777777777777777776664 67777777777777763
Q ss_pred ccCCCCCC--ccccccc----------ccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLP--ARIQGIS----------LDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp--~~l~~L~----------~~~c~sL~~l~~~~n~l~~ 114 (372)
.+ +|.+. .+++.|+ +.++++|+.|+++.|.+..
T Consensus 147 ~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 147 SD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred CC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC
Confidence 32 33211 1222222 3456677777777666543
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.78 E-value=2.6e-08 Score=100.01 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=40.5
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEccccccc
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKML 81 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~l 81 (372)
+|++|...+.+ .+..+++|+.|+|++|++.. +| ++.+++|+.|++++|+++.++ +..+++|++|++++|++.
T Consensus 154 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 154 DCHLNKKITKL--DVTPQTQLTTLDCSFNKITE--LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp ECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC--CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCCccccc--ccccCCcCCEEECCCCccce--ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccc
Confidence 45566444444 25566666666666666642 44 555556666666666555543 555555556666555543
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.77 E-value=7.9e-09 Score=99.71 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=66.5
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCE-EeccCCCCcccc-hhhhcCCCCcEEEccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEE-LHLSGNNFVTLL-ASIYRLSSLRGIKLEE 77 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~-L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~ 77 (372)
|+|++|+|....+..|.+|++|+.|+|++|++. +.+|. .|.++++|.. +.+.+|+++.+| ..+..+++|++|++++
T Consensus 35 L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~ 113 (350)
T 4ay9_X 35 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113 (350)
T ss_dssp EEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEE
T ss_pred EEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccc
Confidence 578999998666667899999999999999986 66765 4788888775 566789999775 5688999999999999
Q ss_pred ccccc
Q 017394 78 CKMLQ 82 (372)
Q Consensus 78 n~~l~ 82 (372)
|++..
T Consensus 114 n~l~~ 118 (350)
T 4ay9_X 114 TGIKH 118 (350)
T ss_dssp ECCSS
T ss_pred ccccc
Confidence 98543
No 127
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.75 E-value=8.4e-09 Score=93.76 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=79.1
Q ss_pred CcccCCC-CCCcCCccccCCCCCCEEeecC-CCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCc---EEEc
Q 017394 1 MPWSSDP-VALSLSSSLSGLCSLTKLDISY-CDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLR---GIKL 75 (372)
Q Consensus 1 L~Ls~N~-i~~~lP~si~~L~~L~~L~Ls~-n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~---~L~L 75 (372)
|+|++|. +....+..|.++++|+.|+|++ |.+. +..|..+..+++|++|+|++|+++.+|. +..+++|+ +|++
T Consensus 60 L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l 137 (239)
T 2xwt_C 60 IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEI 137 (239)
T ss_dssp EEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEE
T ss_pred EeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEEC
Confidence 5788997 7766666889999999999998 8885 3333568899999999999999999997 88888888 9999
Q ss_pred cccccccCCCCCCcccccccccCCcccc-cccCcCccCC
Q 017394 76 EECKMLQNLPRLPARIQGISLDGCVSLE-TLSDVLNLNE 113 (372)
Q Consensus 76 ~~n~~l~~lP~lp~~l~~L~~~~c~sL~-~l~~~~n~l~ 113 (372)
++|..+..+|. ..+ .++++|+ .|+++.|.++
T Consensus 138 ~~N~~l~~i~~--~~~-----~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 138 TDNPYMTSIPV--NAF-----QGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp ESCTTCCEECT--TTT-----TTTBSSEEEEECCSCCCC
T ss_pred CCCcchhhcCc--ccc-----cchhcceeEEEcCCCCCc
Confidence 99932443432 112 2667777 7777776655
No 128
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.74 E-value=2.7e-08 Score=103.51 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=71.7
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+..| +..|++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+..+| .+..+++|+.|+|++|.+
T Consensus 70 L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 70 LFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI 143 (605)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCChh--hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCcc
Confidence 5788898877554 8889999999999998862 55 6888899999999999988876 588888899999988875
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.+ ++. + ..|++|+.|+++.|.+..
T Consensus 144 ~~-l~~----l-----~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 144 TD-ITV----L-----SRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CC-CGG----G-----GSCTTCSEEECCSSCCCC
T ss_pred CC-chh----h-----cccCCCCEEECcCCcCCC
Confidence 43 221 1 244555555555554443
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.69 E-value=8e-09 Score=100.04 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=61.7
Q ss_pred cccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCC----cccCCCC-CCCEEeccCCCCccc-chhhhcC-----CCC
Q 017394 2 PWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIP----SSIGDLC-SLEELHLSGNNFVTL-LASIYRL-----SSL 70 (372)
Q Consensus 2 ~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP----~~i~~L~-~L~~L~Ls~N~l~~l-P~~i~~L-----~~L 70 (372)
.|+.|.+.+.+|..+...++|+.|+|++|.+. +.-+ ..+..++ +|+.|+|++|.++.. +..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 57888898888887776777999999999885 3333 5677788 899999999988843 5566664 889
Q ss_pred cEEEcccccccc
Q 017394 71 RGIKLEECKMLQ 82 (372)
Q Consensus 71 ~~L~L~~n~~l~ 82 (372)
++|+|++|.+..
T Consensus 83 ~~L~Ls~n~l~~ 94 (362)
T 3goz_A 83 TSLNLSGNFLSY 94 (362)
T ss_dssp CEEECCSSCGGG
T ss_pred cEEECcCCcCCh
Confidence 999999888654
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.67 E-value=2.2e-10 Score=101.67 Aligned_cols=102 Identities=25% Similarity=0.240 Sum_probs=84.8
Q ss_pred CcccCCCCCCcCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 1 MPWSSDPVALSLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
|+|++|.+.+ +| .+.++++|+.|+|++|.+. .+|..+..+++|++|+|++|+++.+| .+..+++|++|+|++|++
T Consensus 53 L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 53 LALSTNNIEK-IS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp EECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEEC
T ss_pred EECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcC
Confidence 5789999877 67 8999999999999999995 59988888899999999999999998 799999999999999985
Q ss_pred ccCCCCCCcccccccccCCcccccccCcCccCCC
Q 017394 81 LQNLPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 81 l~~lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.. +|.+ .. +..+++|+.|.+..|.+..
T Consensus 128 ~~-~~~~-~~-----l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 128 TN-WGEI-DK-----LAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp CC-HHHH-HH-----HTTTTTCSEEEECSCHHHH
T ss_pred Cc-hhHH-HH-----HhcCCCCCEEEecCCcccc
Confidence 32 2211 12 3378899999998887654
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.59 E-value=6.6e-09 Score=100.65 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=64.9
Q ss_pred CcccCCCCCCcCC----ccccCCC-CCCEEeecCCCCCCCCCCcccCCC-----CCCCEEeccCCCCcccc-hh----hh
Q 017394 1 MPWSSDPVALSLS----SSLSGLC-SLTKLDISYCDLGEGAIPSSIGDL-----CSLEELHLSGNNFVTLL-AS----IY 65 (372)
Q Consensus 1 L~Ls~N~i~~~lP----~si~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L-----~~L~~L~Ls~N~l~~lP-~~----i~ 65 (372)
|+|++|.+....+ ..+.+++ +|+.|+|++|.+. +..+..+..+ ++|++|+|++|.++..+ .. +.
T Consensus 27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 105 (362)
T 3goz_A 27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA 105 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHH
Confidence 6899999888777 6788888 8999999999996 5556666664 89999999999998444 43 44
Q ss_pred cC-CCCcEEEcccccccc
Q 017394 66 RL-SSLRGIKLEECKMLQ 82 (372)
Q Consensus 66 ~L-~~L~~L~L~~n~~l~ 82 (372)
.+ ++|+.|+|++|.+..
T Consensus 106 ~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 106 AIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp TSCTTCCEEECCSSCGGG
T ss_pred hCCCCccEEECcCCcCCc
Confidence 55 899999999998544
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.58 E-value=3.7e-09 Score=103.01 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=61.7
Q ss_pred CcccCCCCCCcC----CccccCCCCCCEEeecCCCCCC--CCCCccc-------CCCCCCCEEeccCCCCcc-----cch
Q 017394 1 MPWSSDPVALSL----SSSLSGLCSLTKLDISYCDLGE--GAIPSSI-------GDLCSLEELHLSGNNFVT-----LLA 62 (372)
Q Consensus 1 L~Ls~N~i~~~l----P~si~~L~~L~~L~Ls~n~l~~--~~lP~~i-------~~L~~L~~L~Ls~N~l~~-----lP~ 62 (372)
|+|++|.+.... +..+..+++|+.|+|++|.+.. +.+|..+ ..+++|++|+|++|.+.. +|.
T Consensus 37 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 116 (386)
T 2ca6_A 37 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116 (386)
T ss_dssp EECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH
Confidence 578888887763 3447788899999998874421 3456554 678899999999998885 788
Q ss_pred hhhcCCCCcEEEccccccc
Q 017394 63 SIYRLSSLRGIKLEECKML 81 (372)
Q Consensus 63 ~i~~L~~L~~L~L~~n~~l 81 (372)
.+..+++|++|+|++|.+.
T Consensus 117 ~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 117 FLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp HHHHCTTCCEEECCSSCCH
T ss_pred HHHhCCCCCEEECcCCCCC
Confidence 8888899999999988753
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.47 E-value=2.9e-08 Score=96.59 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=72.3
Q ss_pred CcccCCCCC-CcCC---ccccCCCCCCEEeecCCCCCCC----CCCcccCCCCCCCEEeccCCCC-----cccchhhhcC
Q 017394 1 MPWSSDPVA-LSLS---SSLSGLCSLTKLDISYCDLGEG----AIPSSIGDLCSLEELHLSGNNF-----VTLLASIYRL 67 (372)
Q Consensus 1 L~Ls~N~i~-~~lP---~si~~L~~L~~L~Ls~n~l~~~----~lP~~i~~L~~L~~L~Ls~N~l-----~~lP~~i~~L 67 (372)
|+|++|.+. +.+| ..+..+++|+.|+|++|.+... .+|..+..+++|+.|+|++|.+ ..+|..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 467777776 4444 3566777888888888877411 2344677788888888888887 4677778888
Q ss_pred CCCcEEEccccccccCCC-CCCcccccccccCCcccccccCcCccCCC
Q 017394 68 SSLRGIKLEECKMLQNLP-RLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 68 ~~L~~L~L~~n~~l~~lP-~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
++|++|+|++|.+...-. .+|..+ ....+++|++|+++.|.+..
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l---~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAF---SKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHH---HTCSSCCCCEEECCSSCCBH
T ss_pred CCcCEEECCCCCCchhhHHHHHHHH---hhccCCCeEEEECcCCcCCH
Confidence 888888888887543200 011111 11236777778877777655
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.37 E-value=6e-08 Score=96.04 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=51.1
Q ss_pred CcccCCCCCCc----CCccccCCCCCCEEeecCCCCCCCC----C-CcccCCCCCCCEEeccCCCCcc-----cchhhhc
Q 017394 1 MPWSSDPVALS----LSSSLSGLCSLTKLDISYCDLGEGA----I-PSSIGDLCSLEELHLSGNNFVT-----LLASIYR 66 (372)
Q Consensus 1 L~Ls~N~i~~~----lP~si~~L~~L~~L~Ls~n~l~~~~----l-P~~i~~L~~L~~L~Ls~N~l~~-----lP~~i~~ 66 (372)
|+|++|.+... +|..+..+++|+.|+|++|.+. +. + +..+..+++|+.|+|++|.++. +|..+..
T Consensus 204 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 282 (461)
T 1z7x_W 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG-DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282 (461)
T ss_dssp EECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH-HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred EEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC-hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh
Confidence 45666666553 4556666777777777777764 21 1 2223356777777777777774 6767777
Q ss_pred CCCCcEEEcccccc
Q 017394 67 LSSLRGIKLEECKM 80 (372)
Q Consensus 67 L~~L~~L~L~~n~~ 80 (372)
+++|+.|+|++|.+
T Consensus 283 ~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 283 KESLKELSLAGNEL 296 (461)
T ss_dssp CTTCCEEECTTCCC
T ss_pred CCCcceEECCCCCC
Confidence 77777777777764
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.29 E-value=7.6e-07 Score=85.69 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=74.2
Q ss_pred cccC-CCCCCcCCccccCCC-CCCEEeecCCCCCCCCCCcccCCCCCCCEEeccC-CCCcccch-hhhcCCCCcEEEccc
Q 017394 2 PWSS-DPVALSLSSSLSGLC-SLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSG-NNFVTLLA-SIYRLSSLRGIKLEE 77 (372)
Q Consensus 2 ~Ls~-N~i~~~lP~si~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~-N~l~~lP~-~i~~L~~L~~L~L~~ 77 (372)
++++ |.+....+..+..+. .|+.|+|++|++. .||..+....+|+.|++++ |.++.||. .|..+++|+.|+|++
T Consensus 134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hhccccccccccccchhhcchhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 3434 455555555667765 6888999999995 4888877888899999974 77889986 568999999999999
Q ss_pred cccccCCCC-CCcccccccccCCccccccc
Q 017394 78 CKMLQNLPR-LPARIQGISLDGCVSLETLS 106 (372)
Q Consensus 78 n~~l~~lP~-lp~~l~~L~~~~c~sL~~l~ 106 (372)
|++ ..+|. ....++.|.+.++..|+.++
T Consensus 212 N~l-~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 212 TRI-HSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp SCC-CCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred CCc-CccChhhhccchHhhhccCCCcCcCC
Confidence 984 45553 34456666666666666665
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.06 E-value=8.4e-07 Score=83.01 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=37.8
Q ss_pred CCCCCCEEeecCCCCCCC--CCCcccCCCCCCCEEeccCCCCcccchhhhcCC--CCcEEEccccccccCCC
Q 017394 18 GLCSLTKLDISYCDLGEG--AIPSSIGDLCSLEELHLSGNNFVTLLASIYRLS--SLRGIKLEECKMLQNLP 85 (372)
Q Consensus 18 ~L~~L~~L~Ls~n~l~~~--~lP~~i~~L~~L~~L~Ls~N~l~~lP~~i~~L~--~L~~L~L~~n~~l~~lP 85 (372)
++++|+.|+|++|+|. + .+|..+..+++|+.|+|++|+|+.+. .+..+. +|+.|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~-~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCC-CCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCC-CCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 4566666666666665 3 33444556666666666666666542 233333 66666666666554443
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.96 E-value=8.7e-07 Score=87.60 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=73.7
Q ss_pred CcccCCCCCCcCCccccC-----CCCCCEEeecCCCCCCCC----CCcccCCCCCCCEEeccCCCCccc-chhhhc----
Q 017394 1 MPWSSDPVALSLSSSLSG-----LCSLTKLDISYCDLGEGA----IPSSIGDLCSLEELHLSGNNFVTL-LASIYR---- 66 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~-----L~~L~~L~Ls~n~l~~~~----lP~~i~~L~~L~~L~Ls~N~l~~l-P~~i~~---- 66 (372)
|+|++|.+....+..+.. .++|+.|+|++|.+. +. +|..+..+++|+.|+|++|.++.. +..+..
T Consensus 289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT-AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367 (461)
T ss_dssp EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB-GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc-hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC
Confidence 578888886554433332 368999999999986 33 566677889999999999988833 344432
Q ss_pred -CCCCcEEEccccccccC-CCCCCcccccccccCCcccccccCcCccCCC
Q 017394 67 -LSSLRGIKLEECKMLQN-LPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 67 -L~~L~~L~L~~n~~l~~-lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
.++|+.|+|++|++... +..+|..+. .+++|+.|+++.|.+..
T Consensus 368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~-----~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 368 PGSVLRVLWLADCDVSDSSCSSLAATLL-----ANHSLRELDLSNNCLGD 412 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHH-----HCCCCCEEECCSSSCCH
T ss_pred CCCceEEEECCCCCCChhhHHHHHHHHH-----hCCCccEEECCCCCCCH
Confidence 67999999999975420 001222333 57778888888777653
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=5e-06 Score=77.71 Aligned_cols=72 Identities=24% Similarity=0.254 Sum_probs=58.3
Q ss_pred CcccCCCCCC--cCCccccCCCCCCEEeecCCCCCCCCCCcccCCCC--CCCEEeccCCCCc-ccch-------hhhcCC
Q 017394 1 MPWSSDPVAL--SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLC--SLEELHLSGNNFV-TLLA-------SIYRLS 68 (372)
Q Consensus 1 L~Ls~N~i~~--~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~--~L~~L~Ls~N~l~-~lP~-------~i~~L~ 68 (372)
|+|++|.+.+ .+|..+..+++|+.|+|++|+|.. + ..+..++ +|+.|+|++|.+. .+|. .+..++
T Consensus 175 L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P 251 (267)
T 3rw6_A 175 LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFP 251 (267)
T ss_dssp EECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCT
T ss_pred EECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCc
Confidence 6899999998 566777899999999999999973 3 3455555 9999999999998 5662 467889
Q ss_pred CCcEEEc
Q 017394 69 SLRGIKL 75 (372)
Q Consensus 69 ~L~~L~L 75 (372)
+|+.||-
T Consensus 252 ~L~~LDg 258 (267)
T 3rw6_A 252 KLLRLDG 258 (267)
T ss_dssp TCCEESS
T ss_pred ccCeECC
Confidence 9988864
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.87 E-value=7.7e-07 Score=87.01 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=45.7
Q ss_pred CcccCCCCCCcCCcccc-CCCCCCEEeecCCCCCCCCCCccc-----CCCCCCCEEeccCCCCcc-----cchhhhcCCC
Q 017394 1 MPWSSDPVALSLSSSLS-GLCSLTKLDISYCDLGEGAIPSSI-----GDLCSLEELHLSGNNFVT-----LLASIYRLSS 69 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~-~L~~L~~L~Ls~n~l~~~~lP~~i-----~~L~~L~~L~Ls~N~l~~-----lP~~i~~L~~ 69 (372)
|+|++|.+...-...+. .+++|+.|+|++|.+. ..-...+ ...++|+.|+|++|.++. ++..+..+++
T Consensus 106 L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 184 (372)
T 3un9_A 106 VNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG-PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184 (372)
T ss_dssp EECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC-HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS
T ss_pred EEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC-HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC
Confidence 46777776543222222 3556777777777764 2111112 234667777777777652 4445566677
Q ss_pred CcEEEcccccc
Q 017394 70 LRGIKLEECKM 80 (372)
Q Consensus 70 L~~L~L~~n~~ 80 (372)
|++|+|++|.+
T Consensus 185 L~~L~Ls~N~l 195 (372)
T 3un9_A 185 VTHLSLLHTGL 195 (372)
T ss_dssp CCEEECTTSSC
T ss_pred cCEEeCCCCCC
Confidence 77777777763
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=6.5e-05 Score=71.34 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=27.1
Q ss_pred CCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccc
Q 017394 44 LCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEEC 78 (372)
Q Consensus 44 L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n 78 (372)
+++|+.|+|++|+++.||. .|.++++|+.|+|.+|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence 5678888888888887774 5777888888888765
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.75 E-value=4.4e-06 Score=85.19 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=29.9
Q ss_pred CCCCCCEEeecCCCCCCCC----CCcccCCCCCCCEEeccCCCCc-----ccchhhhcCCCCcEEEccccc
Q 017394 18 GLCSLTKLDISYCDLGEGA----IPSSIGDLCSLEELHLSGNNFV-----TLLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 18 ~L~~L~~L~Ls~n~l~~~~----lP~~i~~L~~L~~L~Ls~N~l~-----~lP~~i~~L~~L~~L~L~~n~ 79 (372)
++++|+.|+|++|.+. +. ++..+..+++|+.|+|++|.++ .++..+..+++|+.|+|++|.
T Consensus 162 ~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFS-EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HCTTCSEEECTTCEEE-CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred hCCCCCEEECcccccc-CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 4555555555555543 22 2223334455555555555543 333344455555555555554
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.63 E-value=2.4e-06 Score=83.42 Aligned_cols=108 Identities=11% Similarity=0.136 Sum_probs=64.8
Q ss_pred CcccCCCCCCcCCccccC-----CCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhh-----hcCCC
Q 017394 1 MPWSSDPVALSLSSSLSG-----LCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASI-----YRLSS 69 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~~-----L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i-----~~L~~ 69 (372)
|+|++|.+...-...+.. .++|+.|+|++|.+.+..+..-...+++|+.|+|++|.++... ..+ ...++
T Consensus 77 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~ 156 (372)
T 3un9_A 77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQ 156 (372)
T ss_dssp EECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCC
T ss_pred EEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCc
Confidence 578888887543333332 2689999999998852112222334568899999999887322 222 24678
Q ss_pred CcEEEccccccccC-CCCCCcccccccccCCcccccccCcCccCC
Q 017394 70 LRGIKLEECKMLQN-LPRLPARIQGISLDGCVSLETLSDVLNLNE 113 (372)
Q Consensus 70 L~~L~L~~n~~l~~-lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~ 113 (372)
|+.|+|++|.+... ...++..+ ..+++|++|+++.|.+.
T Consensus 157 L~~L~Ls~n~l~~~~~~~l~~~L-----~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 157 ITTLRLSNNPLTAAGVAVLMEGL-----AGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHH-----HTCSSCCEEECTTSSCH
T ss_pred cceeeCCCCCCChHHHHHHHHHH-----hcCCCcCEEeCCCCCCC
Confidence 99999999974320 00111111 24556666666666554
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=0.00012 Score=69.53 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=75.8
Q ss_pred CCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccch-hhhcCCCCc-EEEccccccccCCCCCCccccccc
Q 017394 19 LCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLR-GIKLEECKMLQNLPRLPARIQGIS 95 (372)
Q Consensus 19 L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~-~L~L~~n~~l~~lP~lp~~l~~L~ 95 (372)
+++|+.|+|++|++. .||. .|.++++|+.|+|..| ++.|+. .|.++.+|+ .|++.+ . +..|+ .-.
T Consensus 225 ~~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~-------~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT--TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S-VTAIE-------FGA 292 (329)
T ss_dssp CTTCCEEECTTBCCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T-CCEEC-------TTT
T ss_pred cCCCeEEECCCCCcc--eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c-ceEEc-------hhh
Confidence 789999999999995 4776 4899999999999998 888884 689999999 999987 3 33333 223
Q ss_pred ccCCcccccccCcCccCCCCCCccccccccccccc
Q 017394 96 LDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA 130 (372)
Q Consensus 96 ~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~ 130 (372)
+.+|++|+.+.+..|.+...... .|.+|.+|.
T Consensus 293 F~~c~~L~~l~l~~n~i~~I~~~---aF~~~~~L~ 324 (329)
T 3sb4_A 293 FMGCDNLRYVLATGDKITTLGDE---LFGNGVPSK 324 (329)
T ss_dssp TTTCTTEEEEEECSSCCCEECTT---TTCTTCCCC
T ss_pred hhCCccCCEEEeCCCccCccchh---hhcCCcchh
Confidence 45999999999987776553222 688888875
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.43 E-value=3.9e-05 Score=78.16 Aligned_cols=40 Identities=15% Similarity=-0.075 Sum_probs=23.9
Q ss_pred cCCCCCCCEEeccCCCCcccchhhhcCCCCcEEEcccccc
Q 017394 41 IGDLCSLEELHLSGNNFVTLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 41 i~~L~~L~~L~Ls~N~l~~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
+..+++|+.|+++++....+|..+..+++|++|+|++|.+
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 3334444444444443445666667777888888887763
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.40 E-value=1e-05 Score=70.99 Aligned_cols=94 Identities=11% Similarity=0.076 Sum_probs=55.4
Q ss_pred cccCCCCCCEEeecCC-CCCCC---CCCcccCCCCCCCEEeccCCCCc-----ccchhhhcCCCCcEEEccccccccC-C
Q 017394 15 SLSGLCSLTKLDISYC-DLGEG---AIPSSIGDLCSLEELHLSGNNFV-----TLLASIYRLSSLRGIKLEECKMLQN-L 84 (372)
Q Consensus 15 si~~L~~L~~L~Ls~n-~l~~~---~lP~~i~~L~~L~~L~Ls~N~l~-----~lP~~i~~L~~L~~L~L~~n~~l~~-l 84 (372)
.+...+.|+.|+|++| .+.+. .+...+...++|++|+|++|.+. .+...+...+.|++|+|++|.+... .
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456677888888887 76421 13344566677888888888776 2445566667788888887764221 0
Q ss_pred CCCCcccccccccCCcccccccC--cCccCC
Q 017394 85 PRLPARIQGISLDGCVSLETLSD--VLNLNE 113 (372)
Q Consensus 85 P~lp~~l~~L~~~~c~sL~~l~~--~~n~l~ 113 (372)
..+...+ ..+++|++|++ ..|.+.
T Consensus 111 ~~l~~~L-----~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 111 LALVEAL-----QSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHGG-----GGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHH-----HhCCCceEEEecCCCCCCC
Confidence 0011122 25566777777 555553
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.27 E-value=8.4e-06 Score=83.07 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=34.4
Q ss_pred CCCCCCEEeecCCCCCCCCCCcccC-CCCCCCEEeccCC-CCcc--cchhhhcCCCCcEEEccccc
Q 017394 18 GLCSLTKLDISYCDLGEGAIPSSIG-DLCSLEELHLSGN-NFVT--LLASIYRLSSLRGIKLEECK 79 (372)
Q Consensus 18 ~L~~L~~L~Ls~n~l~~~~lP~~i~-~L~~L~~L~Ls~N-~l~~--lP~~i~~L~~L~~L~L~~n~ 79 (372)
.+++|+.|+|++|.++ +..+..+. .+++|+.|+|++| .++. ++..+..+++|++|+|++|.
T Consensus 103 ~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVT-DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HCTTCCEEEEESCBCC-HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred hCCCCCeEEeeCcEEc-HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 4556666666666654 33344443 4566666666666 4442 44444556666666666665
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.13 E-value=0.00012 Score=63.98 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=48.5
Q ss_pred cCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCC-Ccc-cchhhhcC----CCCcEEEcccccc
Q 017394 11 SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNN-FVT-LLASIYRL----SSLRGIKLEECKM 80 (372)
Q Consensus 11 ~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~-l~~-lP~~i~~L----~~L~~L~L~~n~~ 80 (372)
.+|.....-..|+.|||++|.+++..+ ..+..+++|+.|+|++|. ++. ==..|..+ ++|++|+|++|..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence 345433233479999999999874333 347889999999999995 661 11245543 4799999999973
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.99 E-value=0.00023 Score=72.36 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=50.5
Q ss_pred CcccCCCCCCcCCcccc-CCCCCCEEeecCC-CCCCCCCCcccCCCCCCCEEeccCCCCcc-----cchhhhcCCCCcEE
Q 017394 1 MPWSSDPVALSLSSSLS-GLCSLTKLDISYC-DLGEGAIPSSIGDLCSLEELHLSGNNFVT-----LLASIYRLSSLRGI 73 (372)
Q Consensus 1 L~Ls~N~i~~~lP~si~-~L~~L~~L~Ls~n-~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~-----lP~~i~~L~~L~~L 73 (372)
|+|++|.+.+..+..+. .+++|+.|+|++| .+....++..+..+++|++|+|++|.++. ++.....+++|+.|
T Consensus 110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L 189 (594)
T 2p1m_B 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189 (594)
T ss_dssp EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEE
T ss_pred EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEE
Confidence 45667766666555554 5778888888887 44311144445567788888888887652 33333356678888
Q ss_pred Eccccc
Q 017394 74 KLEECK 79 (372)
Q Consensus 74 ~L~~n~ 79 (372)
++++|.
T Consensus 190 ~l~~~~ 195 (594)
T 2p1m_B 190 NISCLA 195 (594)
T ss_dssp ECTTCC
T ss_pred EecccC
Confidence 888775
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.99 E-value=0.00045 Score=60.35 Aligned_cols=90 Identities=11% Similarity=0.231 Sum_probs=54.8
Q ss_pred CCcccCCCCCCCEEeccCCCCc--ccchhhhcCCCCcEEEcccccccc-----CCCCC---CcccccccccCCccccccc
Q 017394 37 IPSSIGDLCSLEELHLSGNNFV--TLLASIYRLSSLRGIKLEECKMLQ-----NLPRL---PARIQGISLDGCVSLETLS 106 (372)
Q Consensus 37 lP~~i~~L~~L~~L~Ls~N~l~--~lP~~i~~L~~L~~L~L~~n~~l~-----~lP~l---p~~l~~L~~~~c~sL~~l~ 106 (372)
+|.....-..|+.|||+++.++ .+ ..+..+++|+.|+|++|..+. .|..+ ..+|+.|++++|+.++.--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4543323347999999999987 33 357889999999999997432 12232 2357788888887665422
Q ss_pred CcC-ccCCCCCCccccccccccccc
Q 017394 107 DVL-NLNEHQIPNIHVHCVDCLKLA 130 (372)
Q Consensus 107 ~~~-n~l~~~~~~l~~~~~nc~kL~ 130 (372)
+.. ..+ ..+. .+.+.+|.++.
T Consensus 132 l~~L~~~-~~L~--~L~L~~c~~It 153 (176)
T 3e4g_A 132 IIALHHF-RNLK--YLFLSDLPGVK 153 (176)
T ss_dssp HHHGGGC-TTCC--EEEEESCTTCC
T ss_pred HHHHhcC-CCCC--EEECCCCCCCC
Confidence 211 001 0111 23777887775
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.94 E-value=0.00017 Score=63.07 Aligned_cols=109 Identities=11% Similarity=0.116 Sum_probs=77.9
Q ss_pred CcccCC-CCCCc----CCccccCCCCCCEEeecCCCCCCC---CCCcccCCCCCCCEEeccCCCCcc-----cchhhhcC
Q 017394 1 MPWSSD-PVALS----LSSSLSGLCSLTKLDISYCDLGEG---AIPSSIGDLCSLEELHLSGNNFVT-----LLASIYRL 67 (372)
Q Consensus 1 L~Ls~N-~i~~~----lP~si~~L~~L~~L~Ls~n~l~~~---~lP~~i~~L~~L~~L~Ls~N~l~~-----lP~~i~~L 67 (372)
|+|++| .+... +...+...++|+.|+|++|.+.+. .+...+...++|++|+|++|.+.. +...+...
T Consensus 41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n 120 (185)
T 1io0_A 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSN 120 (185)
T ss_dssp EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC
T ss_pred EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhC
Confidence 578888 77642 445567788999999999999521 134456667899999999999983 66778888
Q ss_pred CCCcEEEc--cccccccC-CCCCCcccccccccCCcccccccCcCccCCC
Q 017394 68 SSLRGIKL--EECKMLQN-LPRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 68 ~~L~~L~L--~~n~~l~~-lP~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
+.|+.|+| ++|.+... ...+...+ ..+++|++|++..|.+..
T Consensus 121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L-----~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNVEMEIANML-----EKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHH-----HHCSSCCEEECCCSSHHH
T ss_pred CCceEEEecCCCCCCCHHHHHHHHHHH-----HhCCCcCEEeccCCCCCh
Confidence 99999999 77874321 00011122 367889999999887643
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.89 E-value=0.0018 Score=63.65 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=24.7
Q ss_pred ccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccc
Q 017394 16 LSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEE 77 (372)
Q Consensus 16 i~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~ 77 (372)
|.++++|+.++|..|++. .||...-...+|+.+.|. ++++.|+ ..|.++++|+.+.+..
T Consensus 176 F~~c~~L~~l~l~~n~l~--~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKIT--KLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTCTTCCEEECTTSCCS--EECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCT
T ss_pred hhCcccCCeeecCCCcce--EechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCC
Confidence 344444444444444442 233332223444444444 2244343 2344445555555543
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.65 E-value=0.0034 Score=51.70 Aligned_cols=56 Identities=27% Similarity=0.322 Sum_probs=43.3
Q ss_pred CEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcccccc
Q 017394 23 TKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 23 ~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~~ 80 (372)
..++.+++.|+...+|..+. ++|+.|+|++|+|+.||. .|..+++|+.|+|.+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47888888884125886543 468999999999998885 467888999999998863
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.76 E-value=0.013 Score=48.18 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=41.1
Q ss_pred cccCCCCC-CcCCccccCCCCCCEEeecCCCCCCCCCCcc-cCCCCCCCEEeccCCCCc
Q 017394 2 PWSSDPVA-LSLSSSLSGLCSLTKLDISYCDLGEGAIPSS-IGDLCSLEELHLSGNNFV 58 (372)
Q Consensus 2 ~Ls~N~i~-~~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~~L~~L~Ls~N~l~ 58 (372)
+.+++++. ..+|..+. .+|+.|+|++|+|+ .||.. |..+++|+.|+|++|.+.
T Consensus 14 ~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 14 DCGRRGLTWASLPTAFP--VDTTELVLTGNNLT--ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp ECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS--SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EeCCCCCccccCCCCCC--cCCCEEECCCCcCC--ccChhhhhhccccCEEEecCCCee
Confidence 55677775 36665432 46999999999996 37664 788999999999999876
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.70 E-value=0.028 Score=54.99 Aligned_cols=82 Identities=16% Similarity=0.172 Sum_probs=44.3
Q ss_pred ccCCCCCCEEeecCCCCCCCCC-CcccCCCCCCCEEeccCCCCc-----ccc-hhhhcCCCCcEEEccccccccCCCCCC
Q 017394 16 LSGLCSLTKLDISYCDLGEGAI-PSSIGDLCSLEELHLSGNNFV-----TLL-ASIYRLSSLRGIKLEECKMLQNLPRLP 88 (372)
Q Consensus 16 i~~L~~L~~L~Ls~n~l~~~~l-P~~i~~L~~L~~L~Ls~N~l~-----~lP-~~i~~L~~L~~L~L~~n~~l~~lP~lp 88 (372)
|.+ .+|+.+.|. +++. .| +..|.++++|+.+++.+|.+. .|+ ..|.++++|+.+.|.++ +..|+.
T Consensus 245 F~~-~~L~~i~lp-~~i~--~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~-- 316 (401)
T 4fdw_A 245 FRE-SGITTVKLP-NGVT--NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ-- 316 (401)
T ss_dssp TTT-CCCSEEEEE-TTCC--EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT--
T ss_pred ccc-CCccEEEeC-CCcc--EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh--
Confidence 444 567777773 3342 24 334666777777777666554 344 35666777777766532 222221
Q ss_pred cccccccccCCcccccccCcCc
Q 017394 89 ARIQGISLDGCVSLETLSDVLN 110 (372)
Q Consensus 89 ~~l~~L~~~~c~sL~~l~~~~n 110 (372)
-.+.+|++|+.+.++.+
T Consensus 317 -----~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 317 -----GLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp -----TTTTTCCSCCEEEECTT
T ss_pred -----hhhcCCCCccEEEECcc
Confidence 12335666666665443
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.40 E-value=0.0027 Score=61.60 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=44.8
Q ss_pred cCCccccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCc-ccchhhh--cCCCCcEEEccc
Q 017394 11 SLSSSLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFV-TLLASIY--RLSSLRGIKLEE 77 (372)
Q Consensus 11 ~lP~si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~-~lP~~i~--~L~~L~~L~L~~ 77 (372)
.+++.+..+++|+.|+|++|.-. .+|. +. +++|+.|+|..+.+. ..-..+. .+++|+.|+|+.
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l--~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL--SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC--BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc--eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 35555677899999999988421 2554 43 889999999988876 2223343 789999999863
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.23 E-value=0.0035 Score=60.75 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=59.3
Q ss_pred CCCCCCEEeecC--CCCCCCC-----CCccc--CCCCCCCEEeccCCCCc-ccchhhh---cCCCCcEEEccccccccCC
Q 017394 18 GLCSLTKLDISY--CDLGEGA-----IPSSI--GDLCSLEELHLSGNNFV-TLLASIY---RLSSLRGIKLEECKMLQNL 84 (372)
Q Consensus 18 ~L~~L~~L~Ls~--n~l~~~~-----lP~~i--~~L~~L~~L~Ls~N~l~-~lP~~i~---~L~~L~~L~L~~n~~l~~l 84 (372)
.+++|+.|+|+. +... +. +...+ ..+++|+.|+|.+|.+. ..+..+. .+++|+.|+|+.|.+...-
T Consensus 217 ~lp~L~~L~L~~~~~~~~-~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYG-FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp BCTTCCEEEEECBCGGGT-CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred cCCCCcEEEEeccccccc-cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 789999999964 2211 11 11222 35789999999999987 3444443 5789999999998753310
Q ss_pred -CCCCcccccccccCCcccccccCcCccCCC
Q 017394 85 -PRLPARIQGISLDGCVSLETLSDVLNLNEH 114 (372)
Q Consensus 85 -P~lp~~l~~L~~~~c~sL~~l~~~~n~l~~ 114 (372)
..++..+. .+++|+.|++..|.++.
T Consensus 296 ~~~L~~~L~-----~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 296 ARLLLDHVD-----KIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHHTTHH-----HHTTCSEEECCSBBCCH
T ss_pred HHHHHhhcc-----cCCcceEEECCCCcCCH
Confidence 01222222 67889999998887653
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.07 E-value=0.27 Score=46.76 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=58.2
Q ss_pred ccccCCCCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccccccCCCCCCccc
Q 017394 14 SSLSGLCSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECKMLQNLPRLPARI 91 (372)
Q Consensus 14 ~si~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~~l~~lP~lp~~l 91 (372)
..+.++..|+.+.+..+ +. .|. ..+.++.+|+.+.+.. +++.++. .+..+.+|+.+.+.++.. ..|+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~--~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i-~~I~------ 302 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VT--SIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAI-ETLE------ 302 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CC--EECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTC-CEEC------
T ss_pred ccccCCccceEEEcCCC-cc--EeCccccceeehhccccccc-cceecccccccccccccccccccccc-ceeh------
Confidence 34566777888887654 32 243 3466677777777754 3566663 567777788777765542 2122
Q ss_pred ccccccCCcccccccCcCccCCCCCCccccccccccccc
Q 017394 92 QGISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA 130 (372)
Q Consensus 92 ~~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~ 130 (372)
.-.+.+|++|+.+.++.+.-. +.. ..|.+|.+|.
T Consensus 303 -~~aF~~c~~L~~i~lp~~l~~--I~~--~aF~~C~~L~ 336 (379)
T 4h09_A 303 -PRVFMDCVKLSSVTLPTALKT--IQV--YAFKNCKALS 336 (379)
T ss_dssp -TTTTTTCTTCCEEECCTTCCE--ECT--TTTTTCTTCC
T ss_pred -hhhhcCCCCCCEEEcCccccE--EHH--HHhhCCCCCC
Confidence 123347777777776644211 111 1566777665
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.93 E-value=0.23 Score=47.80 Aligned_cols=99 Identities=18% Similarity=0.313 Sum_probs=65.8
Q ss_pred cccCCCCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEccccccccCCCCCCcccc
Q 017394 15 SLSGLCSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLEECKMLQNLPRLPARIQ 92 (372)
Q Consensus 15 si~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~ 92 (372)
.|.++..|+.+.+..+... |. ..+.++++|+.+.+. ++++.|+. .|.++.+|+.+.|..+ +.. +.
T Consensus 260 aF~~c~~L~~i~lp~~~~~---I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~-------I~ 326 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS---IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQ-------IL 326 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE---ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCE-------EC
T ss_pred eeeecccccEEecccccce---ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccE-------eh
Confidence 4566778888888655432 33 347778889998885 56777774 6788889998887643 221 22
Q ss_pred cccccCCcccccccCcCccCCCCCCccccccccccccc
Q 017394 93 GISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA 130 (372)
Q Consensus 93 ~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~ 130 (372)
.-.+.+|++|+.+.++.+.-. +.. ..|.+|.+|.
T Consensus 327 ~~aF~~C~~L~~i~ip~sv~~--I~~--~aF~~C~~L~ 360 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSSVTK--IPE--SAFSNCTALN 360 (394)
T ss_dssp TTTTTTCTTCCEEEECTTCCB--CCG--GGGTTCTTCC
T ss_pred HhHhhCCCCCCEEEECcccCE--EhH--hHhhCCCCCC
Confidence 234568999999988765221 222 2788888875
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.82 E-value=0.16 Score=48.94 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=29.4
Q ss_pred cccCCCCCCEEeecCCCCCCCCCCcccCCCCCCCEEeccCCCCcccch-hhhcCCCCcEEEcc
Q 017394 15 SLSGLCSLTKLDISYCDLGEGAIPSSIGDLCSLEELHLSGNNFVTLLA-SIYRLSSLRGIKLE 76 (372)
Q Consensus 15 si~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~~L~~L~Ls~N~l~~lP~-~i~~L~~L~~L~L~ 76 (372)
.+..+..|+.+.+....+. ...+..+.+|+.+.+..+ ++.|+. .|.++.+|+.++|.
T Consensus 271 ~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp TTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred ccccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 3445555665555443321 123455566666666433 555542 45566666666553
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.94 E-value=0.47 Score=45.05 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=60.3
Q ss_pred cccCCCCCCEEeecCCCCCCCCCC-cccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccccccCCCCCCcccc
Q 017394 15 SLSGLCSLTKLDISYCDLGEGAIP-SSIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECKMLQNLPRLPARIQ 92 (372)
Q Consensus 15 si~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~ 92 (372)
.+.....|+.+.+..+ +. .++ ..+..+..|+.+.+..+ ++.|+ ..+..+.+|+.+.+..+ +.. +.
T Consensus 212 ~f~~~~~l~~i~~~~~-~~--~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~-------i~ 278 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VT--TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKT-------VP 278 (379)
T ss_dssp TTTTCSSCSEEECCTT-CC--EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSE-------EC
T ss_pred ccccccccceeeeccc-ee--EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--cee-------cc
Confidence 3455667777777544 21 133 34667788888888655 66665 35667778888777543 221 22
Q ss_pred cccccCCcccccccCcCccCCCCCCccccccccccccc
Q 017394 93 GISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA 130 (372)
Q Consensus 93 ~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~ 130 (372)
.-.+.+|++|+.+.++.+.+.. +.. ..|.+|.+|.
T Consensus 279 ~~aF~~c~~L~~i~l~~~~i~~-I~~--~aF~~c~~L~ 313 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDNSAIET-LEP--RVFMDCVKLS 313 (379)
T ss_dssp TTTTTTCTTCCEEEECCTTCCE-ECT--TTTTTCTTCC
T ss_pred ccccccccccccccccccccce-ehh--hhhcCCCCCC
Confidence 2234588888888877654432 111 2677887775
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.31 E-value=0.071 Score=47.13 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=43.8
Q ss_pred cCCCCCCEEeecCC-CCCCC---CCCcccCCCCCCCEEeccCCCCc-----ccchhhhcCCCCcEEEcccccc
Q 017394 17 SGLCSLTKLDISYC-DLGEG---AIPSSIGDLCSLEELHLSGNNFV-----TLLASIYRLSSLRGIKLEECKM 80 (372)
Q Consensus 17 ~~L~~L~~L~Ls~n-~l~~~---~lP~~i~~L~~L~~L~Ls~N~l~-----~lP~~i~~L~~L~~L~L~~n~~ 80 (372)
.+-+.|+.|+|++| .+.+. .|-..+..-+.|+.|+|++|.+. .|-..+..=+.|+.|+|+.|.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 34567888888875 66310 13344556678888888888877 3445566667888888888874
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=89.70 E-value=0.53 Score=45.18 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=70.9
Q ss_pred cccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccccccCCCCCCcccc
Q 017394 15 SLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECKMLQNLPRLPARIQ 92 (372)
Q Consensus 15 si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~ 92 (372)
.+..+.+|+.+.+..+ +. .|+. .|.++++|+.++|.. +++.|+ ..|.++.+|+.+.+..+ +..|+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~------- 358 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIG------- 358 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEEC-------
T ss_pred cccccccccccccccc-cc--eechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEeh-------
Confidence 4667889999999765 42 3544 588899999999974 488887 57889999999988654 22222
Q ss_pred cccccCCcccccccCcCccCCCCCCccccccccccccc
Q 017394 93 GISLDGCVSLETLSDVLNLNEHQIPNIHVHCVDCLKLA 130 (372)
Q Consensus 93 ~L~~~~c~sL~~l~~~~n~l~~~~~~l~~~~~nc~kL~ 130 (372)
.-.+.+|++|+.+.++.+.-.. ...|.+|.+|.
T Consensus 359 ~~aF~~C~~L~~i~lp~~~~~~-----~~~F~~c~~L~ 391 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKRLEQY-----RYDFEDTTKFK 391 (394)
T ss_dssp TTTBTTCTTCCEEEEEGGGGGG-----GGGBCTTCEEE
T ss_pred HHHhhCCCCCCEEEECCCCEEh-----hheecCCCCCc
Confidence 2245699999999987653222 23789998875
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.06 E-value=0.95 Score=43.36 Aligned_cols=84 Identities=13% Similarity=0.278 Sum_probs=61.9
Q ss_pred cccCCCCCCEEeecCCCCCCCCCCc-ccCCCCCCCEEeccCCCCcccc-hhhhcCCCCcEEEccccccccCCCCCCcccc
Q 017394 15 SLSGLCSLTKLDISYCDLGEGAIPS-SIGDLCSLEELHLSGNNFVTLL-ASIYRLSSLRGIKLEECKMLQNLPRLPARIQ 92 (372)
Q Consensus 15 si~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~~L~~L~Ls~N~l~~lP-~~i~~L~~L~~L~L~~n~~l~~lP~lp~~l~ 92 (372)
.+.+++.|+.+.+.. .+. .|+. .|.++.+|+.++|..+ ++.|. ..|.++.+|+.+.|..+ +. .+.
T Consensus 283 aF~~c~~L~~i~l~~-~i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~-------~I~ 349 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RIT--ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VT-------KIP 349 (394)
T ss_dssp TTTTCTTCCEEECCT-TCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CC-------BCC
T ss_pred ccccccccccccCCC-ccc--ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cC-------EEh
Confidence 466788999999963 453 3654 5888999999999754 77776 47889999999988643 22 233
Q ss_pred cccccCCcccccccCcCcc
Q 017394 93 GISLDGCVSLETLSDVLNL 111 (372)
Q Consensus 93 ~L~~~~c~sL~~l~~~~n~ 111 (372)
.-.+.+|++|+.+.++.+.
T Consensus 350 ~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp GGGGTTCTTCCEEEESSCH
T ss_pred HhHhhCCCCCCEEEECCce
Confidence 3345699999999987654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.90 E-value=0.42 Score=42.10 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=47.9
Q ss_pred CcccCC-CCCCc----CCccccCCCCCCEEeecCCCCCC---CCCCcccCCCCCCCEEeccCCCCc-----ccchhhhcC
Q 017394 1 MPWSSD-PVALS----LSSSLSGLCSLTKLDISYCDLGE---GAIPSSIGDLCSLEELHLSGNNFV-----TLLASIYRL 67 (372)
Q Consensus 1 L~Ls~N-~i~~~----lP~si~~L~~L~~L~Ls~n~l~~---~~lP~~i~~L~~L~~L~Ls~N~l~-----~lP~~i~~L 67 (372)
|+|++| .|... +-..+..-+.|+.|+|++|.+.+ ..|-..+..=+.|+.|+|+.|.|. .|-..+..=
T Consensus 46 L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N 125 (197)
T 1pgv_A 46 VNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVT 125 (197)
T ss_dssp EECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTT
T ss_pred EECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhC
Confidence 456654 54321 23345555778888888888742 123333445577888888888877 233345555
Q ss_pred CCCcEEEcccc
Q 017394 68 SSLRGIKLEEC 78 (372)
Q Consensus 68 ~~L~~L~L~~n 78 (372)
..|+.|+|++|
T Consensus 126 ~tL~~L~L~n~ 136 (197)
T 1pgv_A 126 QSIVEFKADNQ 136 (197)
T ss_dssp CCCSEEECCCC
T ss_pred CceeEEECCCC
Confidence 66888888765
No 165
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=69.04 E-value=1.2 Score=25.22 Aligned_cols=12 Identities=50% Similarity=0.850 Sum_probs=8.9
Q ss_pred CCCCCCcccccc
Q 017394 358 NDEEEPQPKRFR 369 (372)
Q Consensus 358 ~~~~~~~~~~~~ 369 (372)
|++|||++||-|
T Consensus 15 dedeepprkrkr 26 (28)
T 3ukw_C 15 DEDEEPPRKRKR 26 (28)
T ss_dssp CGGGSCCSSCCC
T ss_pred ccccCcchhhhc
Confidence 566888888865
Done!