BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017396
         (372 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6G526|DNAA_BARHE Chromosomal replication initiator protein DnaA OS=Bartonella
           henselae (strain ATCC 49882 / Houston 1) GN=dnaA PE=3
           SV=2
          Length = 494

 Score = 39.3 bits (90), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 151 EECHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDY-VRLEKTKV 209
           E CH  N  +D   Q V     P ++   L L ++++++G + + I APDY +RLE  + 
Sbjct: 268 EFCHLLNMLLDSAKQVVVAADRPPSELESLDLRVRSRLQGGVALEIEAPDYEMRLEMLRQ 327

Query: 210 QLR 212
           +L+
Sbjct: 328 RLK 330


>sp|Q60420|HTF4_MESAU Transcription factor 12 (Fragment) OS=Mesocricetus auratus GN=TCF12
           PE=2 SV=2
          Length = 437

 Score = 33.5 bits (75), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 45  NDTTGGSNLVTNSSQTKNVNGNRGDQVNKSVKGADDKNGINKNNTFHPLGSKNADNV--- 101
           N   GGS+LVTNS     V  +R D VN +   +   + +  +NT   L  K  +N    
Sbjct: 203 NSNYGGSSLVTNSRSASMVGTHREDSVNLNGNHSVLSSTVAASNTD--LNHKTPENYRGG 260

Query: 102 ---QKGNVVP-KGKKELSDRKDNLSDEVKSKDVSKEGGPDEDSGKSRKEGTR 149
              Q GNVVP + K E  ++ +NL +   S D+  +   DE S K  K  +R
Sbjct: 261 LQNQSGNVVPTEIKTENKEKDENLHEPPSSDDMKSD---DESSQKDIKVSSR 309


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.129    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,329,528
Number of Sequences: 539616
Number of extensions: 6498909
Number of successful extensions: 33343
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 294
Number of HSP's that attempted gapping in prelim test: 22149
Number of HSP's gapped (non-prelim): 6622
length of query: 372
length of database: 191,569,459
effective HSP length: 119
effective length of query: 253
effective length of database: 127,355,155
effective search space: 32220854215
effective search space used: 32220854215
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)