Query 017396
Match_columns 372
No_of_seqs 39 out of 41
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 08:12:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05454 DAG1: Dystroglycan (D 87.9 0.15 3.4E-06 50.3 0.0 21 280-300 155-175 (290)
2 PHA03283 envelope glycoprotein 83.7 2.6 5.7E-05 45.2 6.4 64 283-350 413-483 (542)
3 COG1470 Predicted membrane pro 81.2 4 8.6E-05 43.5 6.6 63 177-246 398-466 (513)
4 PF12259 DUF3609: Protein of u 74.9 1.4 3E-05 44.7 1.1 23 280-302 308-330 (361)
5 PF15102 TMEM154: TMEM154 prot 72.0 3.2 6.8E-05 37.9 2.6 20 281-300 68-87 (146)
6 PF02480 Herpes_gE: Alphaherpe 71.6 1.3 2.8E-05 46.0 0.0 19 283-301 366-384 (439)
7 PF14283 DUF4366: Domain of un 71.3 6.7 0.00014 37.5 4.7 22 280-301 167-188 (218)
8 PF12273 RCR: Chitin synthesis 70.8 1.1 2.3E-05 38.5 -0.6 7 292-298 20-26 (130)
9 PF07213 DAP10: DAP10 membrane 69.8 2.3 4.9E-05 35.4 1.1 33 280-316 45-77 (79)
10 PF06280 DUF1034: Fn3-like dom 69.1 22 0.00047 29.3 6.8 69 178-246 10-110 (112)
11 PF10633 NPCBM_assoc: NPCBM-as 60.6 35 0.00076 26.4 6.1 48 178-225 7-60 (78)
12 PF13908 Shisa: Wnt and FGF in 60.4 7.5 0.00016 34.8 2.7 7 288-294 96-102 (179)
13 TIGR03524 GldJ gliding motilit 57.9 6 0.00013 42.8 1.8 38 1-38 3-41 (559)
14 PF05506 DUF756: Domain of unk 57.4 72 0.0016 25.4 7.6 45 179-223 21-65 (89)
15 PF01299 Lamp: Lysosome-associ 56.4 6.8 0.00015 38.0 1.8 33 273-310 274-306 (306)
16 PF14874 PapD-like: Flagellar- 53.1 56 0.0012 25.9 6.3 68 178-245 22-97 (102)
17 PF11614 FixG_C: IG-like fold 53.0 38 0.00082 28.1 5.5 46 180-225 35-84 (118)
18 PF06030 DUF916: Bacterial pro 48.9 48 0.001 28.7 5.6 32 169-200 20-51 (121)
19 PF11359 gpUL132: Glycoprotein 47.1 12 0.00026 36.5 1.8 14 333-346 134-147 (235)
20 PHA03291 envelope glycoprotein 46.0 10 0.00022 39.4 1.2 15 7-21 3-17 (401)
21 PF05083 LST1: LST-1 protein; 45.7 5.5 0.00012 32.8 -0.6 32 288-319 13-52 (74)
22 PTZ00364 dipeptidyl-peptidase 44.4 50 0.0011 35.7 6.0 17 230-246 437-453 (548)
23 KOG4764 Uncharacterized conser 42.4 9.5 0.00021 31.2 0.3 10 332-341 39-48 (70)
24 KOG4818 Lysosomal-associated m 37.3 21 0.00046 36.9 2.0 34 272-310 329-362 (362)
25 PF12768 Rax2: Cortical protei 35.8 18 0.00038 35.6 1.1 36 281-316 242-281 (281)
26 PHA03281 envelope glycoprotein 35.3 21 0.00046 39.0 1.6 38 284-321 571-610 (642)
27 PF04478 Mid2: Mid2 like cell 34.3 28 0.0006 32.3 2.0 16 284-299 65-80 (154)
28 PRK11548 outer membrane biogen 34.2 32 0.00069 29.2 2.3 25 1-25 1-25 (113)
29 PF07172 GRP: Glycine rich pro 34.2 21 0.00047 30.1 1.2 14 1-14 1-14 (95)
30 PF12273 RCR: Chitin synthesis 33.2 8.8 0.00019 33.0 -1.3 19 280-298 11-29 (130)
31 TIGR02866 CoxB cytochrome c ox 33.2 31 0.00068 31.7 2.2 35 281-316 24-65 (201)
32 PF11770 GAPT: GRB2-binding ad 32.7 37 0.0008 31.6 2.5 18 277-296 16-33 (158)
33 PF11669 WBP-1: WW domain-bind 32.6 10 0.00023 32.1 -0.9 10 341-350 88-97 (102)
34 PF09680 Tiny_TM_bacill: Prote 32.5 36 0.00079 22.9 1.8 19 3-21 4-22 (24)
35 PRK15396 murein lipoprotein; P 31.5 32 0.0007 28.4 1.8 24 1-24 1-25 (78)
36 PF14610 DUF4448: Protein of u 31.5 16 0.00036 33.1 0.1 10 291-300 178-187 (189)
37 PF10989 DUF2808: Protein of u 29.7 1.2E+02 0.0027 26.6 5.2 36 180-215 30-67 (146)
38 PF05393 Hum_adeno_E3A: Human 28.5 24 0.00053 30.3 0.6 16 291-309 53-68 (94)
39 PF15102 TMEM154: TMEM154 prot 26.3 71 0.0015 29.4 3.2 41 272-313 63-106 (146)
40 PF15065 NCU-G1: Lysosomal tra 25.4 51 0.0011 33.8 2.4 18 282-299 332-349 (350)
41 PF00943 Alpha_E2_glycop: Alph 25.3 68 0.0015 33.8 3.3 16 284-299 367-382 (403)
42 PF13953 PapC_C: PapC C-termin 24.5 1.2E+02 0.0025 23.4 3.7 20 227-246 40-62 (68)
43 PF07705 CARDB: CARDB; InterP 23.9 3.3E+02 0.0071 20.7 6.3 47 177-224 20-70 (101)
44 TIGR01433 CyoA cytochrome o ub 23.3 94 0.002 29.6 3.6 15 287-301 49-63 (226)
45 PF13908 Shisa: Wnt and FGF in 23.2 46 0.001 29.8 1.4 21 280-300 91-111 (179)
46 PF00974 Rhabdo_glycop: Rhabdo 22.3 29 0.00063 36.7 0.0 25 288-312 470-496 (501)
47 PF09972 DUF2207: Predicted me 22.3 1.4E+02 0.003 29.6 4.7 12 189-200 131-142 (511)
48 PF07610 DUF1573: Protein of u 22.1 1.5E+02 0.0032 21.3 3.6 40 182-221 2-43 (45)
49 COG1470 Predicted membrane pro 22.0 2.7E+02 0.0059 30.3 6.9 55 170-224 278-342 (513)
50 PF06667 PspB: Phage shock pro 21.8 17 0.00036 29.8 -1.5 27 284-310 15-41 (75)
51 PF07204 Orthoreo_P10: Orthore 21.4 8.7 0.00019 33.2 -3.3 20 291-310 62-81 (98)
52 PRK11679 lipoprotein; Provisio 21.4 95 0.0021 31.3 3.3 36 4-40 9-45 (346)
53 PF06024 DUF912: Nucleopolyhed 21.3 1.1E+02 0.0025 25.6 3.3 27 275-301 66-93 (101)
54 COG3317 NlpB Uncharacterized l 21.1 59 0.0013 33.5 1.9 76 1-77 1-81 (342)
55 PF05478 Prominin: Prominin; 20.5 49 0.0011 36.7 1.2 16 281-296 105-120 (806)
56 PHA03286 envelope glycoprotein 20.3 55 0.0012 35.1 1.5 40 281-320 401-442 (492)
57 PF05160 DSS1_SEM1: DSS1/SEM1 20.1 45 0.00097 26.7 0.6 11 331-341 36-46 (63)
58 PF00635 Motile_Sperm: MSP (Ma 20.0 2.2E+02 0.0048 22.5 4.6 51 173-223 15-67 (109)
No 1
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=87.95 E-value=0.15 Score=50.32 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=0.0
Q ss_pred HHHHHHHhhceeEEeeceecc
Q 017396 280 FAALLILASGCLCVSLRCRQL 300 (372)
Q Consensus 280 ~~tlli~gg~waCckfRrrr~ 300 (372)
++++||++++.|||.+||||.
T Consensus 155 I~~iLLIA~iIa~icyrrkR~ 175 (290)
T PF05454_consen 155 IAAILLIAGIIACICYRRKRK 175 (290)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHhhhhhhc
Confidence 444566778888888887765
No 2
>PHA03283 envelope glycoprotein E; Provisional
Probab=83.70 E-value=2.6 Score=45.17 Aligned_cols=64 Identities=25% Similarity=0.311 Sum_probs=34.6
Q ss_pred HHHHhhceeEEeeceeccCCCCCCceeeec------cCCcccCCCCcCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q 017396 283 LLILASGCLCVSLRCRQLSSGKSKYQRLDM------EVPVASLGNSESD-NNHGWDNSWDDNWDDEEAPKTPSLP 350 (372)
Q Consensus 283 lli~gg~waCckfRrrr~~~~gv~YQeLEM------~lP~S~g~~~e~e-t~dGWD~~WDDDWDDEEA~ksPs~~ 350 (372)
+|+..++|+|+.+|++++. +|.=|-= .||.-..-..-.| -+..=||..|+|=|||-++..|..+
T Consensus 413 ~~~~l~vw~c~~~r~~~~~----~y~ilnpf~~vytslptn~~~~~~f~~~~~~~ddsf~~~~de~~~~~~~~~~ 483 (542)
T PHA03283 413 LLVALVVWGCILYRRSNRK----PYEVLNPFETVYTSVPSNDPEVLVFERLASDSDDSFDSSSDEELEPPPPPGP 483 (542)
T ss_pred HHHHHhhhheeeehhhcCC----cccccCCCccceeccCCCCCcccceeecccCccccccccccccccCCCCCCC
Confidence 3555789999998877653 5655543 1443322111111 1223355777776666665555543
No 3
>COG1470 Predicted membrane protein [Function unknown]
Probab=81.24 E-value=4 Score=43.54 Aligned_cols=63 Identities=19% Similarity=0.414 Sum_probs=40.9
Q ss_pred CCCeEEEEEcCCCCceE---EEEeCCccccc--cceeeee-cccCCceeEEEEEEcCCccEEEEEcCCCceEEecC
Q 017396 177 SPDLSLLIQNKVKGPLT---VRISAPDYVRL--EKTKVQL-RENEGNELRVSIRRKGTVNLITIKAGNGNCRLDFK 246 (372)
Q Consensus 177 S~~lsLLVQNkG~~~L~---V~I~aPd~v~l--~~tki~L-~k~e~kkvkVSI~~~~s~~~IvL~aGkG~C~L~i~ 246 (372)
....-+-|-|.|.-+|+ ++|..|..+.+ ++.+|+. ..+++++|++.|+...+ |+.|+-++.+.
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~-------a~aGdY~i~i~ 466 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPED-------AGAGDYRITIT 466 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCC-------CCCCcEEEEEE
Confidence 35678899999987765 78889987554 4444543 36677887777774322 34555555543
No 4
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=74.90 E-value=1.4 Score=44.74 Aligned_cols=23 Identities=26% Similarity=0.402 Sum_probs=17.7
Q ss_pred HHHHHHHhhceeEEeeceeccCC
Q 017396 280 FAALLILASGCLCVSLRCRQLSS 302 (372)
Q Consensus 280 ~~tlli~gg~waCckfRrrr~~~ 302 (372)
++.+|+++.+|.|++||||+.+.
T Consensus 308 vli~vl~~~~~~~~~~~~~~~~~ 330 (361)
T PF12259_consen 308 VLIIVLISLAWLYRTFRRRQLRS 330 (361)
T ss_pred HHHHHHHHHHhheeehHHHHhhh
Confidence 34456778999999999987653
No 5
>PF15102 TMEM154: TMEM154 protein family
Probab=72.03 E-value=3.2 Score=37.94 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=10.1
Q ss_pred HHHHHHhhceeEEeeceecc
Q 017396 281 AALLILASGCLCVSLRCRQL 300 (372)
Q Consensus 281 ~tlli~gg~waCckfRrrr~ 300 (372)
++|||+.+++.-+++||||.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHheeEEeeccc
Confidence 33444445555555555554
No 6
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=71.63 E-value=1.3 Score=45.97 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHhhceeEEeeceeccC
Q 017396 283 LLILASGCLCVSLRCRQLS 301 (372)
Q Consensus 283 lli~gg~waCckfRrrr~~ 301 (372)
+||++++|+|+++||||+.
T Consensus 366 vVv~viv~vc~~~rrrR~~ 384 (439)
T PF02480_consen 366 VVVGVIVWVCLRCRRRRRQ 384 (439)
T ss_dssp -------------------
T ss_pred HHHHHHhheeeeehhcccc
Confidence 3444566666666666554
No 7
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=71.33 E-value=6.7 Score=37.47 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=15.3
Q ss_pred HHHHHHHhhceeEEeeceeccC
Q 017396 280 FAALLILASGCLCVSLRCRQLS 301 (372)
Q Consensus 280 ~~tlli~gg~waCckfRrrr~~ 301 (372)
++++|+.||++...||+|+++.
T Consensus 167 llv~l~gGGa~yYfK~~K~K~~ 188 (218)
T PF14283_consen 167 LLVALIGGGAYYYFKFYKPKQE 188 (218)
T ss_pred HHHHHhhcceEEEEEEeccccc
Confidence 3444566778888888887664
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=70.85 E-value=1.1 Score=38.52 Aligned_cols=7 Identities=29% Similarity=0.169 Sum_probs=2.5
Q ss_pred EEeecee
Q 017396 292 CVSLRCR 298 (372)
Q Consensus 292 CckfRrr 298 (372)
||.-|||
T Consensus 20 ~~~~rRR 26 (130)
T PF12273_consen 20 YCHNRRR 26 (130)
T ss_pred HHHHHHH
Confidence 3333333
No 9
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=69.80 E-value=2.3 Score=35.41 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=24.6
Q ss_pred HHHHHHHhhceeEEeeceeccCCCCCCceeeeccCCc
Q 017396 280 FAALLILASGCLCVSLRCRQLSSGKSKYQRLDMEVPV 316 (372)
Q Consensus 280 ~~tlli~gg~waCckfRrrr~~~~gv~YQeLEM~lP~ 316 (372)
++||||+++++.|-++|||.++.++ +.-|-+|-
T Consensus 45 vlTLLIv~~vy~car~r~r~~~~~~----kvYiNmp~ 77 (79)
T PF07213_consen 45 VLTLLIVLVVYYCARPRRRPTQEDD----KVYINMPG 77 (79)
T ss_pred HHHHHHHHHHHhhcccccCCcccCC----EEEEeCCC
Confidence 5888999999999999988776544 33455553
No 10
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=69.06 E-value=22 Score=29.30 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=40.7
Q ss_pred CCeEEEEEcCCCCceEEEEeCC-c----------------------cccccceeeeecccCCceeEEEEEEcC-----C-
Q 017396 178 PDLSLLIQNKVKGPLTVRISAP-D----------------------YVRLEKTKVQLRENEGNELRVSIRRKG-----T- 228 (372)
Q Consensus 178 ~~lsLLVQNkG~~~L~V~I~aP-d----------------------~v~l~~tki~L~k~e~kkvkVSI~~~~-----s- 228 (372)
..+.|.|+|.|..+++.+|..- . .+...+.+|.|..++.+++.|+|+... +
T Consensus 10 ~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~~~~~~~~ 89 (112)
T PF06280_consen 10 FSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPSGLDASNG 89 (112)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--GGGHHTT-
T ss_pred eEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehhcCCcccC
Confidence 4567888888888877555322 0 134445677888888888888887522 1
Q ss_pred ---ccEEEEEcCCCceEEecC
Q 017396 229 ---VNLITIKAGNGNCRLDFK 246 (372)
Q Consensus 229 ---~~~IvL~aGkG~C~L~i~ 246 (372)
++-|.|+..++.+.|.|+
T Consensus 90 ~~~eG~I~~~~~~~~~~lsIP 110 (112)
T PF06280_consen 90 PFYEGFITFKSSDGEPDLSIP 110 (112)
T ss_dssp EEEEEEEEEESSTTSEEEEEE
T ss_pred CEEEEEEEEEcCCCCEEEEee
Confidence 244888877777777764
No 11
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=60.64 E-value=35 Score=26.38 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCC---ceEEEEeCCcccc--ccceee-eecccCCceeEEEEEE
Q 017396 178 PDLSLLIQNKVKG---PLTVRISAPDYVR--LEKTKV-QLRENEGNELRVSIRR 225 (372)
Q Consensus 178 ~~lsLLVQNkG~~---~L~V~I~aPd~v~--l~~tki-~L~k~e~kkvkVSI~~ 225 (372)
..+.|.|.|.|.. .+.|++..|+.+. ..+..+ .|..++..++.+.|+.
T Consensus 7 ~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~v 60 (78)
T PF10633_consen 7 VTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTV 60 (78)
T ss_dssp EEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE
T ss_pred EEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEEC
Confidence 3488999999965 4678889999988 444444 4667777776666664
No 12
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=60.37 E-value=7.5 Score=34.81 Aligned_cols=7 Identities=14% Similarity=0.301 Sum_probs=3.1
Q ss_pred hceeEEe
Q 017396 288 SGCLCVS 294 (372)
Q Consensus 288 g~waCck 294 (372)
+++.||+
T Consensus 96 v~~~Cc~ 102 (179)
T PF13908_consen 96 VCFCCCC 102 (179)
T ss_pred hhheecc
Confidence 4445434
No 13
>TIGR03524 GldJ gliding motility-associated lipoprotein GldJ. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldJ is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldJ abolish the gliding phenotype. GldJ is homologous to GldK. There is a GldJ homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=57.85 E-value=6 Score=42.77 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=29.9
Q ss_pred CccchhhHHHHHHHHhhcccccc-cccccccCCCCCCCC
Q 017396 1 MKATSIFLLAFFLVLLVNGCSAA-DKTNFSASSGLDPNL 38 (372)
Q Consensus 1 m~~~~~~~l~~~~~llv~~~~~~-d~~~~~~~~~~d~~~ 38 (372)
|+.++-+++.+++.||+++|+-- ++-+.|..||++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~s~~tgw~~n~ 41 (559)
T TIGR03524 3 MKNVFKITFIVFVSLLFVSCKKKSSSSNKSRATGWSFND 41 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCccccccccceecc
Confidence 56677777888888889999973 447899999998873
No 14
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=57.43 E-value=72 Score=25.45 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEE
Q 017396 179 DLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSI 223 (372)
Q Consensus 179 ~lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI 223 (372)
.+.|.+.|.|...+.|+|..-.|-.-.+..+.|..++..++....
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNAYGGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCCcCCCCCEEEEECCCCEEEEEEee
Confidence 699999999999999999875554444555666665555544433
No 15
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=56.41 E-value=6.8 Score=38.04 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=16.3
Q ss_pred CchhhHHHHHHHHHhhceeEEeeceeccCCCCCCceee
Q 017396 273 PTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQRL 310 (372)
Q Consensus 273 ~~v~~l~~~tlli~gg~waCckfRrrr~~~~gv~YQeL 310 (372)
||++-+.++.|||+ +.-||+..|||++. -||.+
T Consensus 274 PIaVG~~La~lvli-vLiaYli~Rrr~~~----gYq~~ 306 (306)
T PF01299_consen 274 PIAVGAALAGLVLI-VLIAYLIGRRRSRA----GYQSI 306 (306)
T ss_pred HHHHHHHHHHHHHH-HHHhheeEeccccc----ccccC
Confidence 55433323333333 33356666666653 48864
No 16
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=53.08 E-value=56 Score=25.93 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=44.1
Q ss_pred CCeEEEEEcCCCCceEEEEeCCc----cccccceeeeecccCCceeEEEEE-EcCC---ccEEEEEcCCCceEEec
Q 017396 178 PDLSLLIQNKVKGPLTVRISAPD----YVRLEKTKVQLRENEGNELRVSIR-RKGT---VNLITIKAGNGNCRLDF 245 (372)
Q Consensus 178 ~~lsLLVQNkG~~~L~V~I~aPd----~v~l~~tki~L~k~e~kkvkVSI~-~~~s---~~~IvL~aGkG~C~L~i 245 (372)
+...|.|.|.|..++.+.|..|. ++.+++..-.|.-++..+++|.+. ...- ...|.+....+...|.+
T Consensus 22 ~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 22 YSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred EEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECCeEEEEEE
Confidence 34789999999999999887765 355555555566777777777777 2211 23355555555544444
No 17
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=53.01 E-value=38 Score=28.07 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCceEEEEeCC--ccccc--cceeeeecccCCceeEEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAP--DYVRL--EKTKVQLRENEGNELRVSIRR 225 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aP--d~v~l--~~tki~L~k~e~kkvkVSI~~ 225 (372)
|.|-|.|+...+..++|+.. ..+.+ ....|+|..++..++.|.|+.
T Consensus 35 Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 35 YTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEE
Confidence 99999999999998888544 45666 447888999888888888874
No 18
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=48.88 E-value=48 Score=28.67 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=25.7
Q ss_pred EeecCCCCCCCeEEEEEcCCCCceEEEEeCCc
Q 017396 169 CLRVPGNDSPDLSLLIQNKVKGPLTVRISAPD 200 (372)
Q Consensus 169 CLrvsgndS~~lsLLVQNkG~~~L~V~I~aPd 200 (372)
=|++.-.....+.|.|+|.+..+++|.|.+-+
T Consensus 20 dL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~ 51 (121)
T PF06030_consen 20 DLKVKPGQKQTLEVRITNNSDKEITVKVSANT 51 (121)
T ss_pred EEEeCCCCEEEEEEEEEeCCCCCEEEEEEEee
Confidence 35666666777999999999999999996554
No 19
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=47.07 E-value=12 Score=36.52 Aligned_cols=14 Identities=14% Similarity=0.466 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCCCC
Q 017396 333 SWDDNWDDEEAPKT 346 (372)
Q Consensus 333 ~WDDDWDDEEA~ks 346 (372)
+||..||..-|...
T Consensus 134 D~deeee~~S~~~~ 147 (235)
T PF11359_consen 134 DYDEEEEEASAARE 147 (235)
T ss_pred ccccccccchhhhh
Confidence 44444444333333
No 20
>PHA03291 envelope glycoprotein I; Provisional
Probab=46.01 E-value=10 Score=39.38 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=11.3
Q ss_pred hHHHHHHHHhhcccc
Q 017396 7 FLLAFFLVLLVNGCS 21 (372)
Q Consensus 7 ~~l~~~~~llv~~~~ 21 (372)
.+|||+|++-+..|.
T Consensus 3 ~~L~~l~~~~~~~~a 17 (401)
T PHA03291 3 RPLGFLLALGLWACA 17 (401)
T ss_pred cchhhHHHHHhhhhe
Confidence 468888877787784
No 21
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=45.71 E-value=5.5 Score=32.84 Aligned_cols=32 Identities=34% Similarity=0.381 Sum_probs=19.9
Q ss_pred hceeEEeeceeccC--CCCCC--ceeeecc----CCcccC
Q 017396 288 SGCLCVSLRCRQLS--SGKSK--YQRLDME----VPVASL 319 (372)
Q Consensus 288 g~waCckfRrrr~~--~~gv~--YQeLEM~----lP~S~g 319 (372)
.+|.|...||.++- .-..+ -|||-|+ ||++..
T Consensus 13 ~~clC~lsrRvkrLErs~~~~~~eQE~hyasLqrLPv~~s 52 (74)
T PF05083_consen 13 SACLCRLSRRVKRLERSWEQLSSEQELHYASLQRLPVPSS 52 (74)
T ss_pred HHHHHHHHhhhhhcccchhccccccchHHHHHHhCCCCCC
Confidence 56888888876531 11223 4888885 887754
No 22
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=44.39 E-value=50 Score=35.74 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=12.4
Q ss_pred cEEEEEcCCCceEEecC
Q 017396 230 NLITIKAGNGNCRLDFK 246 (372)
Q Consensus 230 ~~IvL~aGkG~C~L~i~ 246 (372)
+-+-|..|...|-|...
T Consensus 437 GYfRI~RG~N~CGIes~ 453 (548)
T PTZ00364 437 GTRKIARGVNAYNIESE 453 (548)
T ss_pred CeEEEEcCCCcccccce
Confidence 34777778888988864
No 23
>KOG4764 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.42 E-value=9.5 Score=31.24 Aligned_cols=10 Identities=70% Similarity=1.813 Sum_probs=5.8
Q ss_pred CCCCCCCCCC
Q 017396 332 NSWDDNWDDE 341 (372)
Q Consensus 332 ~~WDDDWDDE 341 (372)
+.|.|+|||+
T Consensus 39 nvWEdnWDDd 48 (70)
T KOG4764|consen 39 NVWEDNWDDD 48 (70)
T ss_pred hhhhhcCCcc
Confidence 4566666664
No 24
>KOG4818 consensus Lysosomal-associated membrane protein [General function prediction only]
Probab=37.32 E-value=21 Score=36.89 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=18.1
Q ss_pred CCchhhHHHHHHHHHhhceeEEeeceeccCCCCCCceee
Q 017396 272 KPTVPVITFAALLILASGCLCVSLRCRQLSSGKSKYQRL 310 (372)
Q Consensus 272 t~~v~~l~~~tlli~gg~waCckfRrrr~~~~gv~YQeL 310 (372)
+|++....+..|+++...-.||- ||||++ -||.|
T Consensus 329 ~PivVg~~l~gl~~~vliaylIg-rr~~~~----gYq~i 362 (362)
T KOG4818|consen 329 LPIAVGAILAGLVLVVLIAYLIG-RRRSHS----GYQTI 362 (362)
T ss_pred cchHHHHHHHHHHHHHHHHhhee-heeccc----ccccC
Confidence 46655554544444444445776 555443 38864
No 25
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=35.75 E-value=18 Score=35.65 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=20.7
Q ss_pred HHHHHHhhceeEEeeceeccCC--CCCCceeeec--cCCc
Q 017396 281 AALLILASGCLCVSLRCRQLSS--GKSKYQRLDM--EVPV 316 (372)
Q Consensus 281 ~tlli~gg~waCckfRrrr~~~--~gv~YQeLEM--~lP~ 316 (372)
|.++|+|++++++++||..... -..+|.|-|| .+|.
T Consensus 242 ~ll~l~Gii~~~~~r~~~~~~~~p~~~~~d~~~~~~~vpP 281 (281)
T PF12768_consen 242 FLLVLIGIILAYIRRRRQGYVPAPTSPRIDEDEMMQRVPP 281 (281)
T ss_pred HHHHHHHHHHHHHHhhhccCcCCCcccccCcccccccCCC
Confidence 4456667776665554332221 1347999999 5663
No 26
>PHA03281 envelope glycoprotein E; Provisional
Probab=35.29 E-value=21 Score=39.04 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=25.7
Q ss_pred HHHhhceeEEeeceeccCCCCCCceeee--ccCCcccCCC
Q 017396 284 LILASGCLCVSLRCRQLSSGKSKYQRLD--MEVPVASLGN 321 (372)
Q Consensus 284 li~gg~waCckfRrrr~~~~gv~YQeLE--M~lP~S~g~~ 321 (372)
|+++++|+-.+||+|++..+.-+||+-- |+||+-.-+.
T Consensus 571 l~~~~~c~~~~~~~~~~~~~~~~~~~s~~Y~~lP~~d~ed 610 (642)
T PHA03281 571 LAIALICTAKKFGHKAYRSDKAAYGQSMYYAGLPVDDFED 610 (642)
T ss_pred HHHHHHHHHHHhhhheeeccccccccccccccCCCccccc
Confidence 4455665556788776666678888753 5899876443
No 27
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=34.26 E-value=28 Score=32.25 Aligned_cols=16 Identities=25% Similarity=0.052 Sum_probs=10.0
Q ss_pred HHHhhceeEEeeceec
Q 017396 284 LILASGCLCVSLRCRQ 299 (372)
Q Consensus 284 li~gg~waCckfRrrr 299 (372)
+|++.+|.||..|||.
T Consensus 65 ~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 65 GILALVFIFCIRRKKT 80 (154)
T ss_pred HHHHhheeEEEecccC
Confidence 4556667777666653
No 28
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=34.17 E-value=32 Score=29.20 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=18.9
Q ss_pred CccchhhHHHHHHHHhhcccccccc
Q 017396 1 MKATSIFLLAFFLVLLVNGCSAADK 25 (372)
Q Consensus 1 m~~~~~~~l~~~~~llv~~~~~~d~ 25 (372)
|.-..++.+++++++++.+|+..+.
T Consensus 1 m~~~~~~~~~~~~~~~LsgCs~~~~ 25 (113)
T PRK11548 1 MRCKTLTAAAAVLLMLTAGCSTLER 25 (113)
T ss_pred CcchHHHHHHHHHHHHHcccCCCCc
Confidence 5556667777788888999988764
No 29
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.16 E-value=21 Score=30.07 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=9.3
Q ss_pred CccchhhHHHHHHH
Q 017396 1 MKATSIFLLAFFLV 14 (372)
Q Consensus 1 m~~~~~~~l~~~~~ 14 (372)
|....+|||++||+
T Consensus 1 MaSK~~llL~l~LA 14 (95)
T PF07172_consen 1 MASKAFLLLGLLLA 14 (95)
T ss_pred CchhHHHHHHHHHH
Confidence 66566777777753
No 30
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.22 E-value=8.8 Score=32.97 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=11.4
Q ss_pred HHHHHHHhhceeEEeecee
Q 017396 280 FAALLILASGCLCVSLRCR 298 (372)
Q Consensus 280 ~~tlli~gg~waCckfRrr 298 (372)
+|.|+||+..|.=-+-|||
T Consensus 11 ~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 11 AILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445566666766666665
No 31
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=33.15 E-value=31 Score=31.66 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=19.4
Q ss_pred HHHHHHhhceeEEeeceeccCCCCCCc----eeeec---cCCc
Q 017396 281 AALLILASGCLCVSLRCRQLSSGKSKY----QRLDM---EVPV 316 (372)
Q Consensus 281 ~tlli~gg~waCckfRrrr~~~~gv~Y----QeLEM---~lP~ 316 (372)
++++....+|++.+||++++. .-.+| +.||+ .+|.
T Consensus 24 ~v~V~~~l~~~~~k~r~~~~~-~~~~~~~~~~~lEi~wtiiP~ 65 (201)
T TIGR02866 24 SLLVAALLAYVVWKFRRKGDE-EKPSKIHGNRALEYTWTVIPL 65 (201)
T ss_pred HHHHHHHHHHhhhhhhccccc-CCCccccCCceEEEEeehHhH
Confidence 334445666788888875322 12233 45887 3663
No 32
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=32.72 E-value=37 Score=31.64 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=8.0
Q ss_pred hHHHHHHHHHhhceeEEeec
Q 017396 277 VITFAALLILASGCLCVSLR 296 (372)
Q Consensus 277 ~l~~~tlli~gg~waCckfR 296 (372)
+++||.|||.|.+ |+++.
T Consensus 16 i~Ll~lLl~cgiG--cvwhw 33 (158)
T PF11770_consen 16 ISLLLLLLLCGIG--CVWHW 33 (158)
T ss_pred HHHHHHHHHHhcc--eEEEe
Confidence 3334433444444 65553
No 33
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=32.55 E-value=10 Score=32.10 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q 017396 341 EEAPKTPSLP 350 (372)
Q Consensus 341 EEA~ksPs~~ 350 (372)
+|....|..+
T Consensus 88 ~ev~~~p~~p 97 (102)
T PF11669_consen 88 SEVVSFPPTP 97 (102)
T ss_pred HHhccCCCCC
Confidence 4455555443
No 34
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=32.55 E-value=36 Score=22.90 Aligned_cols=19 Identities=21% Similarity=0.592 Sum_probs=14.5
Q ss_pred cchhhHHHHHHHHhhcccc
Q 017396 3 ATSIFLLAFFLVLLVNGCS 21 (372)
Q Consensus 3 ~~~~~~l~~~~~llv~~~~ 21 (372)
..++|++-||++|..++|+
T Consensus 4 ~~FalivVLFILLiIvG~s 22 (24)
T PF09680_consen 4 SGFALIVVLFILLIIVGAS 22 (24)
T ss_pred ccchhHHHHHHHHHHhcce
Confidence 3567778888888888886
No 35
>PRK15396 murein lipoprotein; Provisional
Probab=31.54 E-value=32 Score=28.39 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=16.8
Q ss_pred CccchhhHHHHHHH-Hhhccccccc
Q 017396 1 MKATSIFLLAFFLV-LLVNGCSAAD 24 (372)
Q Consensus 1 m~~~~~~~l~~~~~-llv~~~~~~d 24 (372)
|..+.+++.+++|. +|+.||+--.
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs~~ 25 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSSNA 25 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCch
Confidence 66666777777773 4589998653
No 36
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=31.48 E-value=16 Score=33.09 Aligned_cols=10 Identities=10% Similarity=-0.034 Sum_probs=4.5
Q ss_pred eEEeeceecc
Q 017396 291 LCVSLRCRQL 300 (372)
Q Consensus 291 aCckfRrrr~ 300 (372)
.|+..||+||
T Consensus 178 ~~~~~R~~Rr 187 (189)
T PF14610_consen 178 FFFWNRKKRR 187 (189)
T ss_pred hheeecccee
Confidence 3444454443
No 37
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=29.65 E-value=1.2e+02 Score=26.60 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCceEEEEeCCccc--cccceeeeecccC
Q 017396 180 LSLLIQNKVKGPLTVRISAPDYV--RLEKTKVQLRENE 215 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aPd~v--~l~~tki~L~k~e 215 (372)
+.++-+|.|+.-.+|+|+-|+++ .+...++++.+-.
T Consensus 30 ~~~~p~~~~~~L~~l~I~~p~~~~~~~~~~~i~v~~~~ 67 (146)
T PF10989_consen 30 TIIVPQDAGEALQKLTISQPDGFDGSIDFDKIQVRAFS 67 (146)
T ss_pred EEEccccCCCcceeEEEEccccccccccCCcceEEEEe
Confidence 34445688999999999999975 4566677777554
No 38
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=28.50 E-value=24 Score=30.32 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=10.6
Q ss_pred eEEeeceeccCCCCCCcee
Q 017396 291 LCVSLRCRQLSSGKSKYQR 309 (372)
Q Consensus 291 aCckfRrrr~~~~gv~YQe 309 (372)
.||+-|||-|. +-|.-
T Consensus 53 vCC~kRkrsRr---PIYrP 68 (94)
T PF05393_consen 53 VCCKKRKRSRR---PIYRP 68 (94)
T ss_pred HHHHHhhhccC---Ccccc
Confidence 58888877654 55653
No 39
>PF15102 TMEM154: TMEM154 protein family
Probab=26.35 E-value=71 Score=29.39 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=24.7
Q ss_pred CCchhhHHHHHHHHHhhceeEEeeceecc---CCCCCCceeeecc
Q 017396 272 KPTVPVITFAALLILASGCLCVSLRCRQL---SSGKSKYQRLDME 313 (372)
Q Consensus 272 t~~v~~l~~~tlli~gg~waCckfRrrr~---~~~gv~YQeLEM~ 313 (372)
+|.+.+++++ |+++.++-.|++.|.|+. ++.--.||..|++
T Consensus 63 IP~VLLvlLL-l~vV~lv~~~kRkr~K~~~ss~gsq~~~qt~e~~ 106 (146)
T PF15102_consen 63 IPLVLLVLLL-LSVVCLVIYYKRKRTKQEPSSQGSQSALQTYELG 106 (146)
T ss_pred HHHHHHHHHH-HHHHHheeEEeecccCCCCccccccccccccccC
Confidence 3534333333 344446667899998764 4556778877874
No 40
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=25.43 E-value=51 Score=33.79 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=12.4
Q ss_pred HHHHHhhceeEEeeceec
Q 017396 282 ALLILASGCLCVSLRCRQ 299 (372)
Q Consensus 282 tlli~gg~waCckfRrrr 299 (372)
.++|+||+..|++-+|+|
T Consensus 332 l~li~Ggl~v~~~r~r~~ 349 (350)
T PF15065_consen 332 LLLILGGLYVCLRRRRKR 349 (350)
T ss_pred HHHHHhhheEEEeccccC
Confidence 346778887777766655
No 41
>PF00943 Alpha_E2_glycop: Alphavirus E2 glycoprotein; InterPro: IPR000936 Alphaviruses are enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Semliki Forest and Sindbis viruses []. Alphaviruses consist of three structural proteins: the core nucleocapsid protein C, and the envelope proteins P62 and E1 (IPR002548 from INTERPRO) that associate as a heterodimer. The viral membrane-anchored surface glycoproteins are responsible for receptor recognition and entry into target cells through membrane fusion. The proteolytic maturation of P62 into E2 and E3 (IPR002533 from INTERPRO) causes a change in the viral surface. Together the E1, E2, and sometimes E3 glycoprotein "spikes" form an E1/E2 dimer or an E1/E2/E3 trimer, where E2 extends from the centre to the vertices, E1 fills the space between the vertices, and E3, if present, is at the distal end of the spike [, ]. Upon exposure of the virus to the acidity of the endosome, E1 dissociates from E2 to form an E1 homotrimer, which is necessary for the fusion step to drive the cellular and viral membranes together []. This entry represents the alphaviral E2 glycoprotein. The E2 glycoprotein functions to interact with the nucleocapsid through its cytoplasmic domain, while its ectodomain is responsible for binding a cellular receptor.; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2XFC_B 3N42_B 3N41_B 2XFB_E 3N40_P 3N43_B 3N44_B 3MUU_B 1Z8Y_P 3J0C_H ....
Probab=25.27 E-value=68 Score=33.76 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=11.1
Q ss_pred HHHhhceeEEeeceec
Q 017396 284 LILASGCLCVSLRCRQ 299 (372)
Q Consensus 284 li~gg~waCckfRrrr 299 (372)
.+.+++|+||+-|++=
T Consensus 367 ~~~~s~~~~~~aR~~C 382 (403)
T PF00943_consen 367 SLAASAWLCCKARRKC 382 (403)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4446788888877653
No 42
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=24.48 E-value=1.2e+02 Score=23.36 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=16.5
Q ss_pred CCccEEEEEcCCC---ceEEecC
Q 017396 227 GTVNLITIKAGNG---NCRLDFK 246 (372)
Q Consensus 227 ~s~~~IvL~aGkG---~C~L~i~ 246 (372)
...++|.++|+++ +|.+++.
T Consensus 40 ~~~~~L~V~w~~~~~~~C~~~~~ 62 (68)
T PF13953_consen 40 PPKGTLTVKWGDGANQQCQIDYP 62 (68)
T ss_dssp -TCEEEEEESTSCTTSEEEEEEE
T ss_pred CCCcEEEEEECCCCCCeEEEEec
Confidence 3457899999999 9999975
No 43
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=23.87 E-value=3.3e+02 Score=20.69 Aligned_cols=47 Identities=13% Similarity=0.242 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCc---eEEEEeCCccccccceee-eecccCCceeEEEEE
Q 017396 177 SPDLSLLIQNKVKGP---LTVRISAPDYVRLEKTKV-QLRENEGNELRVSIR 224 (372)
Q Consensus 177 S~~lsLLVQNkG~~~---L~V~I~aPd~v~l~~tki-~L~k~e~kkvkVSI~ 224 (372)
...+.+.|+|.|... +.|.+...+. .+....| .|..++...+.+.+.
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~~~-~~~~~~i~~L~~g~~~~v~~~~~ 70 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLDGN-SVSTVTIPSLAPGESETVTFTWT 70 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEETTE-EEEEEEESEB-TTEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEECCc-eeccEEECCcCCCcEEEEEEEEE
Confidence 345889999999765 5566655542 2233444 666766666555555
No 44
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=23.35 E-value=94 Score=29.63 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=10.0
Q ss_pred hhceeEEeeceeccC
Q 017396 287 ASGCLCVSLRCRQLS 301 (372)
Q Consensus 287 gg~waCckfRrrr~~ 301 (372)
...|...+||+++..
T Consensus 49 ~~~~~~~r~r~~~~~ 63 (226)
T TIGR01433 49 MTLFFAWKYRATNKD 63 (226)
T ss_pred HHheeeEEEeccCCc
Confidence 347788888876543
No 45
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=23.22 E-value=46 Score=29.83 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=13.7
Q ss_pred HHHHHHHhhceeEEeeceecc
Q 017396 280 FAALLILASGCLCVSLRCRQL 300 (372)
Q Consensus 280 ~~tlli~gg~waCckfRrrr~ 300 (372)
|+++|++..-+-||+.++.|+
T Consensus 91 Iv~~Iv~~~Cc~c~~~K~~~~ 111 (179)
T PF13908_consen 91 IVVLIVCFCCCCCCLYKKCRS 111 (179)
T ss_pred HHHhHhhheeccccccccccC
Confidence 455566667777888874443
No 46
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=22.33 E-value=29 Score=36.69 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=0.0
Q ss_pred hceeEE-eeceecc-CCCCCCceeeec
Q 017396 288 SGCLCV-SLRCRQL-SSGKSKYQRLDM 312 (372)
Q Consensus 288 g~waCc-kfRrrr~-~~~gv~YQeLEM 312 (372)
.++.|| ++||+++ +..-.-|.+.||
T Consensus 470 ~l~~cc~~~~r~~~~~~~~~i~~~~~~ 496 (501)
T PF00974_consen 470 LLIRCCCRCRRRRRPKRKRGIYESKVS 496 (501)
T ss_dssp ---------------------------
T ss_pred HHHHHhhhhccccccccCCcccccccc
Confidence 334444 4553332 222345666665
No 47
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=22.29 E-value=1.4e+02 Score=29.56 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=8.6
Q ss_pred CCceEEEEeCCc
Q 017396 189 KGPLTVRISAPD 200 (372)
Q Consensus 189 ~~~L~V~I~aPd 200 (372)
-+.++|+|..|.
T Consensus 131 i~~v~v~i~~P~ 142 (511)
T PF09972_consen 131 IENVTVTITLPK 142 (511)
T ss_pred cceEEEEEECCC
Confidence 456778888884
No 48
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=22.05 E-value=1.5e+02 Score=21.27 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=24.4
Q ss_pred EEEEcCCCCceEEE-EeCCcc-ccccceeeeecccCCceeEE
Q 017396 182 LLIQNKVKGPLTVR-ISAPDY-VRLEKTKVQLRENEGNELRV 221 (372)
Q Consensus 182 LLVQNkG~~~L~V~-I~aPd~-v~l~~tki~L~k~e~kkvkV 221 (372)
+-+.|.|+.+|.+. |.++-. ..++..+-++..+|.-+++|
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~~~~~~~i~PGes~~i~v 43 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTAEYSKKPIAPGESGKIKV 43 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEeeCCcceECCCCEEEEEE
Confidence 56899999999965 444433 33344444566655555444
No 49
>COG1470 Predicted membrane protein [Function unknown]
Probab=21.99 E-value=2.7e+02 Score=30.35 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=42.7
Q ss_pred eecCCCCCCCeEEEEEcCCCCceEEEE--e-CCccccccc-------eeeeecccCCceeEEEEE
Q 017396 170 LRVPGNDSPDLSLLIQNKVKGPLTVRI--S-APDYVRLEK-------TKVQLRENEGNELRVSIR 224 (372)
Q Consensus 170 LrvsgndS~~lsLLVQNkG~~~L~V~I--~-aPd~v~l~~-------tki~L~k~e~kkvkVSI~ 224 (372)
+-++......+.|-|.|+|..+.++.+ . .|++++... ++|-|..+|.+.+.|-++
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ 342 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVY 342 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEe
Confidence 556667777799999999988888766 4 777776554 678888888888777666
No 50
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.78 E-value=17 Score=29.84 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=20.2
Q ss_pred HHHhhceeEEeeceeccCCCCCCceee
Q 017396 284 LILASGCLCVSLRCRQLSSGKSKYQRL 310 (372)
Q Consensus 284 li~gg~waCckfRrrr~~~~gv~YQeL 310 (372)
++++.+|++.-+|.|++.+.|.--++.
T Consensus 15 ifVap~WL~lHY~sk~~~~~gLs~~d~ 41 (75)
T PF06667_consen 15 IFVAPIWLILHYRSKWKSSQGLSEEDE 41 (75)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHH
Confidence 667899999999988776666654443
No 51
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=21.40 E-value=8.7 Score=33.19 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=10.1
Q ss_pred eEEeeceeccCCCCCCceee
Q 017396 291 LCVSLRCRQLSSGKSKYQRL 310 (372)
Q Consensus 291 aCckfRrrr~~~~gv~YQeL 310 (372)
.||+.|+|..+.-.+-+.||
T Consensus 62 ~CC~~K~K~~~~r~~~~reL 81 (98)
T PF07204_consen 62 CCCRAKHKTSAARNTFHREL 81 (98)
T ss_pred HHhhhhhhhHhhhhHHHHHH
Confidence 47766666433323444454
No 52
>PRK11679 lipoprotein; Provisional
Probab=21.35 E-value=95 Score=31.29 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=24.3
Q ss_pred chhhHHHHHHHHhhccccc-ccccccccCCCCCCCCcc
Q 017396 4 TSIFLLAFFLVLLVNGCSA-ADKTNFSASSGLDPNLIG 40 (372)
Q Consensus 4 ~~~~~l~~~~~llv~~~~~-~d~~~~~~~~~~d~~~~~ 40 (372)
...++++++|++++.+||. .+. +.-++.+.|-.+..
T Consensus 9 ~~~~~~~~~l~~~LsaCSs~~~~-krqan~~~dY~~a~ 45 (346)
T PRK11679 9 RVAKVAGVSLVMLLAACSSDQRY-KRQVSGDESYLEAP 45 (346)
T ss_pred HHHHHHHHHHHHHHHHcCCCccc-ccccCCCcchhcCC
Confidence 3456899999999999998 354 44455555554444
No 53
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=21.34 E-value=1.1e+02 Score=25.64 Aligned_cols=27 Identities=37% Similarity=0.470 Sum_probs=14.8
Q ss_pred hhhHHH-HHHHHHhhceeEEeeceeccC
Q 017396 275 VPVITF-AALLILASGCLCVSLRCRQLS 301 (372)
Q Consensus 275 v~~l~~-~tlli~gg~waCckfRrrr~~ 301 (372)
++++.| ..+||+-++...+..|.|++.
T Consensus 66 i~lls~v~IlVily~IyYFVILRer~~~ 93 (101)
T PF06024_consen 66 ISLLSFVCILVILYAIYYFVILRERQKS 93 (101)
T ss_pred HHHHHHHHHHHHHhhheEEEEEeccccc
Confidence 344444 334455566666667766654
No 54
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=21.07 E-value=59 Score=33.53 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=41.2
Q ss_pred CccchhhHHHHHHHHhhcccccccccccccCCCCCCCCccccC-CCCCCCCccc-ccC---ccccccccCCCCCcccccc
Q 017396 1 MKATSIFLLAFFLVLLVNGCSAADKTNFSASSGLDPNLIGSRS-SNDTTGGSNL-VTN---SSQTKNVNGNRGDQVNKSV 75 (372)
Q Consensus 1 m~~~~~~~l~~~~~llv~~~~~~d~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~-~~~---s~~~~~~~~~~~~qv~~~~ 75 (372)
|++...++||+++|+++.+||-.-.++.-++ +-+....+... +-.-..|..+ ..+ ..-..+.++.++++++..-
T Consensus 1 ~k~~~~~v~~al~v~~LaaCSs~~~~~~q~~-d~qsyl~A~~l~~l~~P~Gv~lp~~d~~Y~iP~~~~~~~~g~~~dIrp 79 (342)
T COG3317 1 MKSSAKLVLGALLVLLLAACSSDSEYKRQVS-DDQSYLEARPLPPLEAPAGVILPQQDGLYAIPQGNGTGAVGKALDIRP 79 (342)
T ss_pred CchHHHHHHHHHHHHHHhhccCCcccccccc-cchhhhcccCCCCccCCCCcccCCCCCcccccccccccccccccccCC
Confidence 7888899999999999999995443333332 22222222222 1122223221 111 2233445555778877665
Q ss_pred CC
Q 017396 76 KG 77 (372)
Q Consensus 76 ~~ 77 (372)
-.
T Consensus 80 P~ 81 (342)
T COG3317 80 PA 81 (342)
T ss_pred CC
Confidence 54
No 55
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=20.52 E-value=49 Score=36.70 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=8.7
Q ss_pred HHHHHHhhceeEEeec
Q 017396 281 AALLILASGCLCVSLR 296 (372)
Q Consensus 281 ~tlli~gg~waCckfR 296 (372)
+.+.++|..|.||++.
T Consensus 105 il~P~vg~~fCcCRCc 120 (806)
T PF05478_consen 105 ILMPLVGLCFCCCRCC 120 (806)
T ss_pred HHHHHHHHHHhccccC
Confidence 4445556666666443
No 56
>PHA03286 envelope glycoprotein E; Provisional
Probab=20.31 E-value=55 Score=35.14 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=22.9
Q ss_pred HHHHHHhhceeEEeeceeccCCCCCCceee--eccCCcccCC
Q 017396 281 AALLILASGCLCVSLRCRQLSSGKSKYQRL--DMEVPVASLG 320 (372)
Q Consensus 281 ~tlli~gg~waCckfRrrr~~~~gv~YQeL--EM~lP~S~g~ 320 (372)
+++|++++.|.-|.|||||++.-.-.+|+- -|.||--..+
T Consensus 401 ~~~~~~~~~~~~~~~~r~~~~r~~~~~~~~~ky~~lp~n~~~ 442 (492)
T PHA03286 401 ILVVLLFALCIAGLYRRRRRHRTNGYFQAYPKYMSLPSNDEG 442 (492)
T ss_pred HHHHHHHHHHhHhHhhhhhhhhcccccccCcccccCCCcccc
Confidence 444666778777788877665322233322 2677755443
No 57
>PF05160 DSS1_SEM1: DSS1/SEM1 family; InterPro: IPR007834 This family contains SEM1 and DSS1 which are short acidic proteins. In Saccharomyces cerevisiae, SEM1 is a regulator of both exocyst function and pseudohyphal differentiation []. Loss of DSS1 in Homo sapiens (human) has been associated with split hand/split foot malformations [].; PDB: 3T5V_F 1IYJ_A 1MJE_B 1MIU_B 3T5X_B.
Probab=20.11 E-value=45 Score=26.75 Aligned_cols=11 Identities=55% Similarity=1.631 Sum_probs=3.9
Q ss_pred CCCCCCCCCCC
Q 017396 331 DNSWDDNWDDE 341 (372)
Q Consensus 331 D~~WDDDWDDE 341 (372)
..-|.|||||+
T Consensus 36 ~~lWEddWDDd 46 (63)
T PF05160_consen 36 DHLWEDDWDDD 46 (63)
T ss_dssp ---CETTTTTS
T ss_pred hhccccccCcc
Confidence 34455555543
No 58
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=20.05 E-value=2.2e+02 Score=22.51 Aligned_cols=51 Identities=20% Similarity=0.370 Sum_probs=31.0
Q ss_pred CCCCCCCeEEEEEcCCCCceEEEEeC--CccccccceeeeecccCCceeEEEE
Q 017396 173 PGNDSPDLSLLIQNKVKGPLTVRISA--PDYVRLEKTKVQLRENEGNELRVSI 223 (372)
Q Consensus 173 sgndS~~lsLLVQNkG~~~L~V~I~a--Pd~v~l~~tki~L~k~e~kkvkVSI 223 (372)
+.+......|.|.|.+..++-.+|++ |....+.|..=-|..++...+.|.+
T Consensus 15 ~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~ 67 (109)
T PF00635_consen 15 PFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITF 67 (109)
T ss_dssp STSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE
T ss_pred CCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEE
Confidence 33444557889999999999888844 4445666655556665555544433
Done!