Query 017396
Match_columns 372
No_of_seqs 39 out of 41
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 13:44:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lge_E Sorting nexin-9; comple 86.5 0.19 6.5E-06 34.1 0.8 12 328-339 8-19 (31)
2 2ys4_A Hydrocephalus-inducing 79.2 4 0.00014 32.8 6.0 70 170-239 35-107 (122)
3 2e6j_A Hydin protein; PAPD, st 73.9 9.6 0.00033 29.4 6.7 51 175-225 25-80 (112)
4 2qsv_A Uncharacterized protein 54.9 31 0.0011 30.3 7.0 52 173-224 16-68 (220)
5 3rgh_A Filamin-A; cell adhesio 30.4 1.1E+02 0.0036 23.9 5.8 42 180-224 29-70 (100)
6 3qbt_B Inositol polyphosphate 30.3 89 0.0031 26.0 5.7 47 178-224 45-99 (140)
7 3j0f_I E2 envelope glycoprotei 28.7 45 0.0015 33.8 4.1 20 285-308 382-401 (423)
8 2dmb_A Filamin-B; beta-sandwic 27.4 1.4E+02 0.0046 24.4 6.2 42 180-224 33-74 (124)
9 3j0c_A E1 envelope glycoprotei 26.2 1.7E+02 0.0058 29.7 7.6 74 166-244 303-379 (442)
10 3t5v_C 26S proteasome complex 26.0 27 0.00091 28.7 1.6 10 327-336 57-66 (89)
11 2r39_A FIXG-related protein; s 26.0 1.3E+02 0.0044 24.0 5.7 46 180-225 35-83 (118)
12 2klu_A T-cell surface glycopro 25.1 16 0.00056 28.8 0.2 21 281-301 18-40 (70)
13 2qsv_A Uncharacterized protein 24.4 81 0.0028 27.7 4.6 50 175-224 133-184 (220)
14 2d7m_A Filamin-C; beta-sandwic 24.3 2.1E+02 0.0073 22.5 6.7 42 180-224 34-75 (115)
15 2knc_A Integrin alpha-IIB; tra 24.1 15 0.00051 27.5 -0.2 18 284-301 28-45 (54)
16 2l8s_A Integrin alpha-1; trans 23.6 13 0.00043 28.0 -0.7 18 284-301 25-42 (54)
17 2ks1_B Epidermal growth factor 21.8 20 0.00068 25.7 0.1 11 284-294 25-35 (44)
18 3cnk_A Filamin-A; FLNA24, X-RA 21.4 1.7E+02 0.0058 21.9 5.3 42 180-224 20-61 (89)
19 2dia_A Filamin-B; beta-sandwic 21.3 2E+02 0.0067 22.6 5.9 43 180-225 32-74 (113)
No 1
>3lge_E Sorting nexin-9; complex, glycolysis, actin dynamics, LC4, hydrophobic pocket acetylation, lyase, phosphoprotein, schiff base; 2.20A {Oryctolagus cuniculus}
Probab=86.54 E-value=0.19 Score=34.13 Aligned_cols=12 Identities=50% Similarity=1.420 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCC
Q 017396 328 HGWDNSWDDNWD 339 (372)
Q Consensus 328 dGWD~~WDDDWD 339 (372)
-|=|+.||||||
T Consensus 8 ~G~DDDWDdeWD 19 (31)
T 3lge_E 8 TGDDDDWDEDWD 19 (31)
T ss_pred CCCccccccccc
Confidence 466888999999
No 2
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.20 E-value=4 Score=32.78 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=51.3
Q ss_pred eecCCCCCCCeEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEEEc--C-CccEEEEEcCCC
Q 017396 170 LRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIRRK--G-TVNLITIKAGNG 239 (372)
Q Consensus 170 LrvsgndS~~lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~~~--~-s~~~IvL~aGkG 239 (372)
-.++-.+.....|.|+|.|.-+...++..+....+.+..-.|..++...++|+++-. + -...|++...+|
T Consensus 35 g~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~~F~i~P~~g~L~pg~~~~i~V~F~P~~~g~~~~~l~v~~~~g 107 (122)
T 2ys4_A 35 STCPVKYSTQKILLVRNIGNKNAVFHIKTCRPFSIEPAIGTLNVGESMQLEVEFEPQSVGDHSGRLIVCYDTG 107 (122)
T ss_dssp CSEESSSCEEEEEEEECCSSSCEEEEEECCTTEEEESSEEEECTTCEEEEEEEECCSSSBCCCCBCEEEESSS
T ss_pred CCeecCCeEEEEEEEEECCCCCEEEEEecCCCeEEECCcCEECCCCEEEEEEEEEcCCCccEEEEEEEEECCC
Confidence 333445556689999999999999999888778889999999998888888888732 1 134455554443
No 3
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.89 E-value=9.6 Score=29.40 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=39.4
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCc-----cccccceeeeecccCCceeEEEEEE
Q 017396 175 NDSPDLSLLIQNKVKGPLTVRISAPD-----YVRLEKTKVQLRENEGNELRVSIRR 225 (372)
Q Consensus 175 ndS~~lsLLVQNkG~~~L~V~I~aPd-----~v~l~~tki~L~k~e~kkvkVSI~~ 225 (372)
+......+.++|.|.-++..++..+. ...+++.+=.|..++...++|++..
T Consensus 25 g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~ 80 (112)
T 2e6j_A 25 GSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSS 80 (112)
T ss_dssp SCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECC
T ss_pred CCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEEC
Confidence 44566899999999999999985432 2666777888888888887877763
No 4
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=54.88 E-value=31 Score=30.34 Aligned_cols=52 Identities=27% Similarity=0.438 Sum_probs=37.2
Q ss_pred CCCCCCCeEEEEEcCCCCceEEEE-eCCccccccceeeeecccCCceeEEEEE
Q 017396 173 PGNDSPDLSLLIQNKVKGPLTVRI-SAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 173 sgndS~~lsLLVQNkG~~~L~V~I-~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
...+...+.+.+.|.|+.+|.++. ..|.|..+....-.|..++..+++|.+.
T Consensus 16 ~~g~~~~~~~~i~N~g~~pl~i~~~~~p~~~~~~~~~~~I~PG~~g~I~vt~~ 68 (220)
T 2qsv_A 16 MPEDEGVVRLVVNNTDESDLQVAVVSLPSFVSLDDRAFRLQAREPRELNLSLA 68 (220)
T ss_dssp CTTCCCEEEEEEEECSSSCEEEEEEECCTTEECSCCEEEECSSSCEEEEEEEC
T ss_pred cCCCcceEEEEEEeCCCCceEEEeccCCCceEeeeCcceeCCCCceEEEEEEc
Confidence 344556689999999999999887 4788877654445566766666555553
No 5
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=30.37 E-value=1.1e+02 Score=23.86 Aligned_cols=42 Identities=10% Similarity=0.134 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
++|--.+.|.+.|.|.|..|+...+ .+++..+.+.+-.|+.+
T Consensus 29 F~V~~~~aG~~~l~v~i~~~~g~~~---~~~v~d~~dGty~V~Y~ 70 (100)
T 3rgh_A 29 FQVDCSSAGSAELTIEICSEAGLPA---EVYIQDHGDGTHTITYI 70 (100)
T ss_dssp EEEECTTSCSCCEEEEEECTTSCBC---EEEEEECSSSEEEEEEE
T ss_pred EEEEECCCCCceEEEEEECCCCCEe---EEEEEeCCCCEEEEEEE
Confidence 4555556789999999998885433 35667777777677776
No 6
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=30.29 E-value=89 Score=26.01 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCceEEEEeCC--------ccccccceeeeecccCCceeEEEEE
Q 017396 178 PDLSLLIQNKVKGPLTVRISAP--------DYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 178 ~~lsLLVQNkG~~~L~V~I~aP--------d~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
.--+|.|+|.|+-+....+..+ ..+.+.|..-.|.-++...+.|.+.
T Consensus 45 ~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~ 99 (140)
T 3qbt_B 45 QKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY 99 (140)
T ss_dssp EEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred eeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence 3469999999999999988754 2355667777777766666555554
No 7
>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1z8y_J
Probab=28.73 E-value=45 Score=33.84 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=12.5
Q ss_pred HHhhceeEEeeceeccCCCCCCce
Q 017396 285 ILASGCLCVSLRCRQLSSGKSKYQ 308 (372)
Q Consensus 285 i~gg~waCckfRrrr~~~~gv~YQ 308 (372)
+.+++|+||+-|++= =.||+
T Consensus 382 ~~~s~~~~~~aR~~C----LTPY~ 401 (423)
T 3j0f_I 382 VTVAVLCACKARREC----LTPYA 401 (423)
T ss_pred HHHHHHHHHHHHhhc----CCccc
Confidence 345788888855433 25775
No 8
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=27.42 E-value=1.4e+02 Score=24.38 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
++|...+.|...|+|.|..|+...+. +++..+.+....|+.+
T Consensus 33 F~V~a~daG~~~l~V~I~~p~g~~v~---~~v~d~~dGty~V~Y~ 74 (124)
T 2dmb_A 33 FVVDAKTAGKGKVTCTVLTPDGTEAE---ADVIENEDGTYDIFYT 74 (124)
T ss_dssp EEEECSSSCSCCEEEEEECTTSCBCC---CEEEECTTSCEEEEEE
T ss_pred EEEEEecCCCCcEEEEEECCCCCEEe---eEEEeCCCCEEEEEEE
Confidence 44555567899999999999864433 3455666667667666
No 9
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=26.21 E-value=1.7e+02 Score=29.72 Aligned_cols=74 Identities=11% Similarity=0.181 Sum_probs=44.5
Q ss_pred eEEEeecCCCCCCCeEEEEEcCCCCceEEEEeCCcc-ccccceeeeecccCCceeEEEEEEcCCccEEEEE--cCCCceE
Q 017396 166 FVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDY-VRLEKTKVQLRENEGNELRVSIRRKGTVNLITIK--AGNGNCR 242 (372)
Q Consensus 166 ~vACLrvsgndS~~lsLLVQNkG~~~L~V~I~aPd~-v~l~~tki~L~k~e~kkvkVSI~~~~s~~~IvL~--aGkG~C~ 242 (372)
+..|.-.++.+. ...|+=+....=+.-|..+.. ..|.+..++|.. ..++++-++........+|. ...-.|.
T Consensus 303 v~~CtySsDfGG---vatl~Y~~~k~GkCaVHs~S~~atl~e~~v~v~~--~g~~t~hFSTas~~~~F~v~iC~~~~tC~ 377 (442)
T 3j0c_A 303 LNECVYSSDFGG---IATVKYSASKSGKCAVHVPSGTATLKEAAVELTE--QGSATIHFSTANIHPEFRLQICTSYVTCK 377 (442)
T ss_dssp EEEEBCSSSCCE---EEEEEEEESSCEEEEEECSSTTEEESCSEEEECS--SCEEEEEEEESCSSCEEEEEETTEEEEEE
T ss_pred EEEeEeccCcCc---eEEEEEecCCCcccceeccCCceEeeeeeeeeec--cceEEEEEecCCCCCCEEEEeccCcceec
Confidence 467876666665 566666677777777755544 667777777774 66767777754433343333 3443444
Q ss_pred Ee
Q 017396 243 LD 244 (372)
Q Consensus 243 L~ 244 (372)
-.
T Consensus 378 a~ 379 (442)
T 3j0c_A 378 GD 379 (442)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 10
>3t5v_C 26S proteasome complex subunit SEM1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=26.02 E-value=27 Score=28.68 Aligned_cols=10 Identities=40% Similarity=1.315 Sum_probs=4.6
Q ss_pred CCCCCCCCCC
Q 017396 327 NHGWDNSWDD 336 (372)
Q Consensus 327 ~dGWD~~WDD 336 (372)
..-|.++|||
T Consensus 57 ~~lWEddWDD 66 (89)
T 3t5v_C 57 TNIWEENWDD 66 (89)
T ss_dssp CCCBCTTTTT
T ss_pred cccccccccc
Confidence 3345555543
No 11
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=26.00 E-value=1.3e+02 Score=23.99 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCceEEEEeCC--cccccc-ceeeeecccCCceeEEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAP--DYVRLE-KTKVQLRENEGNELRVSIRR 225 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aP--d~v~l~-~tki~L~k~e~kkvkVSI~~ 225 (372)
|.|-|.|+.+.+-.+.|+.. +.+.+. +..|.|..++..++.|.+..
T Consensus 35 Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~ 83 (118)
T 2r39_A 35 YTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGA 83 (118)
T ss_dssp EEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEE
Confidence 99999999999988887652 224432 23588888887888888774
No 12
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=25.11 E-value=16 Score=28.76 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=10.0
Q ss_pred HHHHHHhhce-eEE-eeceeccC
Q 017396 281 AALLILASGC-LCV-SLRCRQLS 301 (372)
Q Consensus 281 ~tlli~gg~w-aCc-kfRrrr~~ 301 (372)
+.+|+|+|.| .|| ++|+||++
T Consensus 18 ~~lll~~glcI~ccvkcrhRrrq 40 (70)
T 2klu_A 18 AGLLLFIGLGIFFSVRSRHRRRQ 40 (70)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344555554 333 36655554
No 13
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=24.37 E-value=81 Score=27.65 Aligned_cols=50 Identities=14% Similarity=0.353 Sum_probs=33.5
Q ss_pred CCCCCeEEEEEcCCCCceEE-EEeCCcc-ccccceeeeecccCCceeEEEEE
Q 017396 175 NDSPDLSLLIQNKVKGPLTV-RISAPDY-VRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 175 ndS~~lsLLVQNkG~~~L~V-~I~aPd~-v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
.......+.+.|.|..+|.+ +|.++-. ..++..+-++.-++..+++|.+.
T Consensus 133 g~~~~~~f~i~N~G~~pL~I~~v~~scgct~~~~~~~~i~PGe~~~i~v~~~ 184 (220)
T 2qsv_A 133 GETTKAAIEIRNVGAGPLRLHSVTTRNPALTAVPDRTEIKPGGSTLLRIAVD 184 (220)
T ss_dssp TSCEEEEEEEEECSSSCEEEEEEEECSTTEEEEESCSEECTTCEEEEEEEEC
T ss_pred CCeEEEEEEEEECCCCCEEEEEEEeCCCCEeeecCCccCCCCCEEEEEEEEe
Confidence 35555789999999999998 6655543 33334445567766666666554
No 14
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=24.32 E-value=2.1e+02 Score=22.46 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
++|-.-+.|.+.|.|.|..|+...+ .+++..+.+..-.|+.+
T Consensus 34 F~V~~~daG~~~l~V~v~~p~g~~~---~~~v~d~~dGty~v~Y~ 75 (115)
T 2d7m_A 34 FTIDARDAGEGLLTVQILDPEGKPK---KANIRDNGDGTYTVSYL 75 (115)
T ss_dssp EEEEESSSCSSCEEEEEECTTSCBC---CEEEEECSSSCEEEEEC
T ss_pred EEEEECCCCCCEEEEEEECCCCCee---eeEEEECCCCEEEEEEE
Confidence 5555667799999999999885322 23455555666666665
No 15
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.13 E-value=15 Score=27.52 Aligned_cols=18 Identities=0% Similarity=-0.053 Sum_probs=14.2
Q ss_pred HHHhhceeEEeeceeccC
Q 017396 284 LILASGCLCVSLRCRQLS 301 (372)
Q Consensus 284 li~gg~waCckfRrrr~~ 301 (372)
+++.+.|-|-.|+|++..
T Consensus 28 li~~~LwK~GFFkR~~~~ 45 (54)
T 2knc_A 28 ILVLAMWKVGFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHHHHTTTTCCS
T ss_pred HHHHHHHHcCcccCCCCC
Confidence 556789999999888764
No 16
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=23.64 E-value=13 Score=28.01 Aligned_cols=18 Identities=6% Similarity=-0.130 Sum_probs=14.2
Q ss_pred HHHhhceeEEeeceeccC
Q 017396 284 LILASGCLCVSLRCRQLS 301 (372)
Q Consensus 284 li~gg~waCckfRrrr~~ 301 (372)
+++.+.|-|-.|+|+++.
T Consensus 25 Lii~~LwK~GFFKR~~~~ 42 (54)
T 2l8s_A 25 LLILALWKIGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHcCcccCCCcc
Confidence 556789999999888753
No 17
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=21.85 E-value=20 Score=25.72 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=4.4
Q ss_pred HHHhhceeEEe
Q 017396 284 LILASGCLCVS 294 (372)
Q Consensus 284 li~gg~waCck 294 (372)
+++++.|.+.+
T Consensus 25 ~ii~~~~~~~~ 35 (44)
T 2ks1_B 25 LVVALGIGLFM 35 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33444444333
No 18
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=21.40 E-value=1.7e+02 Score=21.89 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
++|-..+.|.+.|.|.|..|+... ..+++..+.+..-.|+.+
T Consensus 20 F~v~~~~aG~~~l~v~v~~p~g~~---~~~~v~d~~dGty~v~Y~ 61 (89)
T 3cnk_A 20 FTVDCSKAGNNMLLVGVHGPRTPC---EEILVKHVGSRLYSVSYL 61 (89)
T ss_dssp EEEECTTSCSCCEEEEEECSSSCC---SEEEEEEEETTEEEEEEE
T ss_pred EEEEECcCCCCcEEEEEECCCCCc---eeEEEEECCCCEEEEEEE
Confidence 333344458899999999888432 234566666666667666
No 19
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=21.28 E-value=2e+02 Score=22.60 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIRR 225 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~~ 225 (372)
+.|-..+.|...|.|.|..|+...+ .+++..+.+.+-.|+.+-
T Consensus 32 F~V~~~daG~~~l~v~i~~~~g~~~---~~~v~d~~dGty~v~Y~p 74 (113)
T 2dia_A 32 LSVDCSEAGPGALGLEAVSDSGTKA---EVSIQNNKDGTYAVTYVP 74 (113)
T ss_dssp EEEEESSCCSCCEEEEEEETTTEEC---EEEEEECTTSEEEEEEEC
T ss_pred EEEEECCCCCccEEEEEECCCCCEe---eEEEEECCCCEEEEEEEe
Confidence 7777778899999999988874333 245666667776777663
Done!