Query 017396
Match_columns 372
No_of_seqs 39 out of 41
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 13:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017396.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017396hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w8oa1 b.1.18.2 (A:403-505) S 72.9 2.4 0.00017 32.3 5.0 51 175-225 16-69 (103)
2 d2d7na1 b.1.18.10 (A:8-87) Fil 34.7 40 0.0029 23.9 5.8 41 181-224 5-46 (80)
3 d2dmba1 b.1.18.10 (A:8-118) Fi 32.4 70 0.0051 23.4 7.1 37 185-224 31-67 (111)
4 d2w0pa1 b.1.18.10 (A:2237-2328 31.0 44 0.0032 24.0 5.5 40 180-224 23-62 (92)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 30.9 2.6 0.00019 31.6 -1.6 18 284-301 32-49 (91)
6 d2d7ma1 b.1.18.10 (A:8-109) Fi 28.6 78 0.0057 22.8 6.7 42 180-224 27-68 (102)
7 d2diaa1 b.1.18.10 (A:8-107) Fi 28.3 64 0.0047 22.9 6.1 44 178-224 23-66 (100)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 26.7 5.1 0.00037 30.1 -0.6 16 284-299 43-58 (100)
9 d2dica1 b.1.18.10 (A:8-105) Fi 25.0 48 0.0035 23.7 4.8 63 153-224 2-64 (98)
10 d1v05a_ b.1.18.10 (A:) Filamin 24.7 77 0.0056 22.4 5.9 42 180-224 27-68 (96)
11 d2di8a1 b.1.18.10 (A:8-105) Fi 24.1 82 0.006 22.6 6.0 40 180-224 25-64 (98)
12 d2dj4a1 b.1.18.10 (A:8-108) Fi 22.4 64 0.0047 23.1 5.1 42 180-224 26-67 (101)
13 d2bp3a1 b.1.18.10 (A:1863-1954 22.2 74 0.0054 22.5 5.3 40 180-224 24-63 (92)
14 d1wzla2 b.71.1.1 (A:503-585) M 20.4 1.3E+02 0.0091 20.7 8.5 36 162-200 10-45 (83)
No 1
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=72.89 E-value=2.4 Score=32.35 Aligned_cols=51 Identities=10% Similarity=0.127 Sum_probs=43.7
Q ss_pred CCCCCeEEEEEcCCCCce---EEEEeCCccccccceeeeecccCCceeEEEEEE
Q 017396 175 NDSPDLSLLIQNKVKGPL---TVRISAPDYVRLEKTKVQLRENEGNELRVSIRR 225 (372)
Q Consensus 175 ndS~~lsLLVQNkG~~~L---~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~~ 225 (372)
.++..+.+.|.|.|..++ .+.+.+|..+.+.+..+.|..+++..+.+.|+.
T Consensus 16 G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~~Vt~ 69 (103)
T d1w8oa1 16 GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQVTITV 69 (103)
T ss_dssp TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEEEEEC
T ss_pred CCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEEEEEC
Confidence 455679999999997765 588899999999999999999999998888884
No 2
>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.70 E-value=40 Score=23.88 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=28.1
Q ss_pred EEEEE-cCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 181 SLLIQ-NKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 181 sLLVQ-NkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
++.|. +.+++.|+|.|..|+...++ +++..+......|+++
T Consensus 5 ~~~i~~~~~~g~l~~~v~~P~G~~~~---~~v~~~~dg~y~v~y~ 46 (80)
T d2d7na1 5 NLVIPFAVQKGELTGEVRMPSGKTAR---PNITDNKDGTITVRYA 46 (80)
T ss_dssp EEEECCCCSSSCEEEEEECTTSCEEC---CEEEECSSSCEEEEEC
T ss_pred EEEEecCCCCCcEEEEEECCCCCEec---eEEEECCCCEEEEEEE
Confidence 44444 67889999999999976544 3455555666566665
No 3
>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.43 E-value=70 Score=23.43 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=25.6
Q ss_pred EcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 185 QNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 185 QNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
.+.|.+.|+|.|..|+...+. +.+.++....-.|+++
T Consensus 31 ~~ag~g~l~v~v~~p~g~~~~---~~v~d~~~G~y~v~f~ 67 (111)
T d2dmba1 31 KTAGKGKVTCTVLTPDGTEAE---ADVIENEDGTYDIFYT 67 (111)
T ss_dssp SSSCSCCEEEEEECTTSCBCC---CEEEECTTSCEEEEEE
T ss_pred CCCCCCcEEEEEEECCCCEEE---eEEEECCCCEEEEEEE
Confidence 488899999999998865544 3344545555566665
No 4
>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.98 E-value=44 Score=24.03 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
+.|-..+.|.+.|.|.|..|..+ .+++..+...+..|+.+
T Consensus 23 F~V~~~~ag~g~l~v~v~gp~~~-----~v~v~d~~dg~y~v~yt 62 (92)
T d2w0pa1 23 FSIWTREAGAGGLAIAVEGPSKA-----EISFEDRKDGSCGVAYV 62 (92)
T ss_dssp EEEECGGGCSCCEEEEEEESSCC-----EEEEEECTTSCEEEEEE
T ss_pred EEEEeCCCCCCceEEEEEeCCce-----EEEEEECCCCEEEEEEE
Confidence 55555678999999999988743 34566666666667766
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=30.95 E-value=2.6 Score=31.56 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=10.5
Q ss_pred HHHhhceeEEeeceeccC
Q 017396 284 LILASGCLCVSLRCRQLS 301 (372)
Q Consensus 284 li~gg~waCckfRrrr~~ 301 (372)
+..+..|...+||+|+..
T Consensus 32 V~~~~~~~~~ryR~~~~~ 49 (91)
T d1fftb2 32 AILMAVGFAWKYRASNKD 49 (91)
T ss_dssp HHHHHHTTTTTTTTSTTT
T ss_pred HHHHHHhhheeeeccCCc
Confidence 334455666777766543
No 6
>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.56 E-value=78 Score=22.80 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
+.+-..+.|.+.|+|.|..|+.-.+. +++..+......|+++
T Consensus 27 F~Vd~~~aG~g~l~v~i~~p~g~~~~---~~v~~~~dg~y~v~y~ 68 (102)
T d2d7ma1 27 FTIDARDAGEGLLTVQILDPEGKPKK---ANIRDNGDGTYTVSYL 68 (102)
T ss_dssp EEEEESSSCSSCEEEEEECTTSCBCC---EEEEECSSSCEEEEEC
T ss_pred EEEEeCCCCCCcEEEEEEeCCCCEee---eEEEeCCCcEEEEEEE
Confidence 45556788999999999999854433 3455544555556665
No 7
>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.28 E-value=64 Score=22.88 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 178 PDLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 178 ~~lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
..+.|-..+.|.+.|.|.|..|....+. ++|..+....-.|+++
T Consensus 23 ~~f~V~~~~ag~~~l~v~i~~~~g~~~~---~~v~~~~dg~y~v~y~ 66 (100)
T d2diaa1 23 GLLSVDCSEAGPGALGLEAVSDSGTKAE---VSIQNNKDGTYAVTYV 66 (100)
T ss_dssp CCEEEEESSCCSCCEEEEEEETTTEECE---EEEEECTTSEEEEEEE
T ss_pred EEEEEEeCCCCCCcEEEEEEeCCCCEee---EEEEECCCCEEEEEEE
Confidence 3467777888999999999988754433 4555555666666665
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=26.74 E-value=5.1 Score=30.07 Aligned_cols=16 Identities=6% Similarity=-0.058 Sum_probs=9.7
Q ss_pred HHHhhceeEEeeceec
Q 017396 284 LILASGCLCVSLRCRQ 299 (372)
Q Consensus 284 li~gg~waCckfRrrr 299 (372)
|....+|+|++||+|+
T Consensus 43 V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 43 VTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHhhhhhccC
Confidence 4445566677777654
No 9
>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.98 E-value=48 Score=23.73 Aligned_cols=63 Identities=11% Similarity=0.251 Sum_probs=36.4
Q ss_pred cCCCCcccccCCceEEEeecCCCCCCCeEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 153 CHSSNKCMDEKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 153 CDpshkC~d~~~k~vACLrvsgndS~~lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
|||+. |+...--|..+. -+ ....+.+...+.|.+.|.|.|..|.... +++..++.....|+++
T Consensus 2 ~Dpsk-v~v~G~Gl~~~~--vg-~~~~F~V~~~~ag~g~l~v~v~~p~~~~-----~~v~~~~dg~y~v~y~ 64 (98)
T d2dica1 2 CQPSR-VQAQGPGLKEAF--TN-KPNVFTVVTRGAGIGGLGITVEGPSESK-----INCRDNKDGSCSAEYI 64 (98)
T ss_dssp CCTTS-CEEESHHHHCEE--TT-CCEEEEEECTTTCSSCEEEEEESSSCCC-----CEEEECSSSCEEEEEC
T ss_pred CCCCe-eEEECCCcCceE--CC-CeEEEEEEcCCCCCCCcEEEEEeCCCcE-----EEEEECCCCEEEEEEE
Confidence 66664 665222233333 12 2223444555778999999999997543 3455555666566665
No 10
>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.73 E-value=77 Score=22.38 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
+.|...+.|.+.|+|.|..|+.-.+. +++..+....-.|+++
T Consensus 27 F~I~~~~ag~g~l~v~v~~p~g~~v~---~~v~~~~~g~y~v~y~ 68 (96)
T d1v05a_ 27 FTVDCSKAGTNMMMVGVHGPKTPCEE---VYVKHMGNRVYNVTYT 68 (96)
T ss_dssp EEEECTTSBSCCEEEEEECSSSCCSE---EEEEECSTTEEEEEEE
T ss_pred EEEEECCCCCCceEEEEEECCCCeee---eEEEECCCCEEEEEEE
Confidence 44555688899999999999854433 3444555555556655
No 11
>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.07 E-value=82 Score=22.58 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
+.+-..+.|.+.|+|.|..|..+ .+++...+..+-.|+++
T Consensus 25 F~V~~~~aG~g~l~v~i~gp~~~-----~v~v~~~~dg~y~v~y~ 64 (98)
T d2di8a1 25 FIVDTRDAGYGGISLAVEGPSKV-----DIQTEDLEDGTCKVSYF 64 (98)
T ss_dssp EEEECTTTCBCCEEEEEESSSCC-----CEECCBCTTSCEEEEEC
T ss_pred EEEEeCCCCCCceEEEEEeCCCc-----eEEEEECCCCEEEEEEE
Confidence 45555677899999999999743 35566666666667665
No 12
>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.40 E-value=64 Score=23.13 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
+.+--...|.+.|+|.|..|+...+. +++..+....-.|+++
T Consensus 26 F~Vd~~~aG~g~l~v~i~~p~g~~~~---~~v~~~~dG~y~v~y~ 67 (101)
T d2dj4a1 26 FTVDSSKAGLAPLEVRVLGPRGLVEP---VNVVDNGDGTHTVTYT 67 (101)
T ss_dssp EEEECTTTCSCCEEEEEECSSSCEEC---CCCEECSSSEEEEEEC
T ss_pred EEEEeCCCCCCCEEEEEEECCCCEeE---EEEEeCCCCEEEEEEE
Confidence 33334567899999999999854332 3455555556566665
No 13
>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.20 E-value=74 Score=22.52 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCceEEEEeCCccccccceeeeecccCCceeEEEEE
Q 017396 180 LSLLIQNKVKGPLTVRISAPDYVRLEKTKVQLRENEGNELRVSIR 224 (372)
Q Consensus 180 lsLLVQNkG~~~L~V~I~aPd~v~l~~tki~L~k~e~kkvkVSI~ 224 (372)
+.+...+.|...|+|.|..|... .+++..+++..-.|+++
T Consensus 24 F~V~~~~aG~g~l~v~v~~p~~~-----~~~v~~~~dg~y~v~yt 63 (92)
T d2bp3a1 24 FTVNTKDAGEGGLSLAIEGPSKA-----EISCTDNQDGTCSVSYL 63 (92)
T ss_dssp EEEECTTCCSEEEEEEEEESSCC-----EEEEEECSSSEEEEEEE
T ss_pred EEEEeCCCCCCceEEEEEeCCCc-----eEEEEECCCCEEEEEEE
Confidence 44444667899999999998743 34566666666677766
No 14
>d1wzla2 b.71.1.1 (A:503-585) Maltogenic amylase {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}
Probab=20.43 E-value=1.3e+02 Score=20.66 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=27.9
Q ss_pred cCCceEEEeecCCCCCCCeEEEEEcCCCCceEEEEeCCc
Q 017396 162 EKMQFVACLRVPGNDSPDLSLLIQNKVKGPLTVRISAPD 200 (372)
Q Consensus 162 ~~~k~vACLrvsgndS~~lsLLVQNkG~~~L~V~I~aPd 200 (372)
+...++|..|..+++. .|++=|.+..+-.|+|..+.
T Consensus 10 ~~~~v~af~R~~~~e~---vlVv~N~s~~~~~v~lp~~~ 45 (83)
T d1wzla2 10 KQANLYAFVRTVQDQH---VGVVLNNRGEKQTVLLQVPE 45 (83)
T ss_dssp TTTTEEEEEEEETTEE---EEEEEECSSSCEEEEEECCG
T ss_pred CCCCEEEEEEECCCCE---EEEEEECCCccEEEEEcCcc
Confidence 3567999999888765 67777788888899886553
Done!