BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017397
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WXF|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Pik-39.
pdb|2WXG|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Sw13.
pdb|2WXH|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Sw14.
pdb|2WXI|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-kinase
P110delta In Complex With Sw30.
pdb|2WXJ|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ink654.
pdb|2WXK|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ink666.
pdb|2WXL|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Zstk474.
pdb|2WXM|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Dl06.
pdb|2WXN|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-kinase
P110delta In Complex With Dl07.
pdb|2WXO|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With As5.
pdb|2WXP|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Gdc-0941.
pdb|2WXQ|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With As15.
pdb|2WXR|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta.
pdb|2X38|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ic87114
Length = 940
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 85/201 (42%), Gaps = 50/201 (24%)
Query: 21 DLSIQRYSVIPLSPNSGLIEWVPNCDTLHYLIREYRDARKITLNQEHKYMLSFAPDYDHL 80
DL + Y +P +GLIE V + DT+ I LN+ +
Sbjct: 703 DLRMTPYGCLPTGDRTGLIEVVLHSDTI----------ANIQLNKSN------------- 739
Query: 81 PLIAKVEVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTN-YTRSLAVMSMVGYLLGLG 139
+A F N A + WLKS+ L+R +T S A + Y+LG+G
Sbjct: 740 --MAATAAF---------NKDALLNWLKSKNPGEALDRAIEEFTLSCAGYCVATYVLGIG 788
Query: 140 DRHPSNLMLHRYSGKILHIDFGDCF-----EASMNREKFPEKVPFRLTRMLVKAMEVSGI 194
DRH N+M+ R SG++ HIDFG + +NR E+VPF LT V ++
Sbjct: 789 DRHSDNIMI-RESGQLFHIDFGHFLGNFKTKFGINR----ERVPFILTYDFVHVIQQGKT 843
Query: 195 EGN-----FRSTCENVMQVLR 210
+ FR CE +LR
Sbjct: 844 NNSEKFERFRGYCERAYTILR 864
>pdb|4AJW|A Chain A, Discovery And Optimization Of New Benzimidazole- And
Benzoxazole- Pyrimidone Selective Pi3kbeta Inhibitors
For The Treatment Of Phosphatase And Tensin Homologue
(Pten)-Deficient Cancers
pdb|4AJW|B Chain B, Discovery And Optimization Of New Benzimidazole- And
Benzoxazole- Pyrimidone Selective Pi3kbeta Inhibitors
For The Treatment Of Phosphatase And Tensin Homologue
(Pten)-Deficient Cancers
Length = 934
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 85/201 (42%), Gaps = 50/201 (24%)
Query: 21 DLSIQRYSVIPLSPNSGLIEWVPNCDTLHYLIREYRDARKITLNQEHKYMLSFAPDYDHL 80
DL + Y +P +GLIE V + DT+ I LN+ +
Sbjct: 697 DLRMTPYGCLPTGDRTGLIEVVLHSDTI----------ANIQLNKSN------------- 733
Query: 81 PLIAKVEVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTN-YTRSLAVMSMVGYLLGLG 139
+A F N A + WLKS+ L+R +T S A + Y+LG+G
Sbjct: 734 --MAATAAF---------NKDALLNWLKSKNPGEALDRAIEEFTLSCAGYCVATYVLGIG 782
Query: 140 DRHPSNLMLHRYSGKILHIDFGDCF-----EASMNREKFPEKVPFRLTRMLVKAMEVSGI 194
DRH N+M+ R SG++ HIDFG + +NR E+VPF LT V ++
Sbjct: 783 DRHSDNIMI-RESGQLFHIDFGHFLGNFKTKFGINR----ERVPFILTYDFVHVIQQGKT 837
Query: 195 EGN-----FRSTCENVMQVLR 210
+ FR CE +LR
Sbjct: 838 NNSEKFERFRGYCERAYTILR 858
>pdb|2Y3A|A Chain A, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 1092
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 99 NDLARVLWLKSRTSEIWLERRTN-YTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILH 157
N A + WLK S L+R +T S A + Y+LG+GDRH N+M+ + +G++ H
Sbjct: 899 NKDALLNWLKEYNSGDDLDRAIEEFTLSCAGYCVASYVLGIGDRHSDNIMVKK-TGQLFH 957
Query: 158 IDFGDC---FEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGN------FRSTCENVMQV 208
IDFG F++ ++ E+VPF LT + ++ G GN FR CE+ +
Sbjct: 958 IDFGHILGNFKSKFGIKR--ERVPFILTYDFIHVIQ-QGKTGNTEKFGRFRQCCEDAYLI 1014
Query: 209 LR 210
LR
Sbjct: 1015 LR 1016
>pdb|3ZIM|A Chain A, Discovery Of A Potent And Isoform-selective Targeted
Covalent Inhibitor Of The Lipid Kinase Pi3kalpha
Length = 940
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 106 WLKSRT-SEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCF 164
WLK + EI+ +TRS A + ++LG+GDRH SN+M+ + G++ HIDFG
Sbjct: 774 WLKDKNKGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFL 832
Query: 165 EASMNREKFP-EKVPFRLTR 183
+ + + E+VPF LT+
Sbjct: 833 DHKKKKFGYKRERVPFVLTQ 852
>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 1096
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 106 WLKSRT-SEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCF 164
WLK + EI+ +TRS A + ++LG+GDRH SN+M+ + G++ HIDFG
Sbjct: 908 WLKDKNKGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFL 966
Query: 165 EASMNREKFP-EKVPFRLTR 183
+ + + E+VPF LT+
Sbjct: 967 DHKKKKFGYKRERVPFVLTQ 986
>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex
Length = 1096
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 106 WLKSRT-SEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCF 164
WLK + EI+ +TRS A + ++LG+GDRH SN+M+ + G++ HIDFG
Sbjct: 908 WLKDKNKGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFL 966
Query: 165 EASMNREKFP-EKVPFRLTR 183
+ + + E+VPF LT+
Sbjct: 967 DHKKKKFGYKRERVPFVLTQ 986
>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 1096
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 106 WLKSRT-SEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCF 164
WLK + EI+ +TRS A + ++LG+GDRH SN+M+ + G++ HIDFG
Sbjct: 908 WLKDKNKGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFL 966
Query: 165 EASMNREKFP-EKVPFRLTR 183
+ + + E+VPF LT+
Sbjct: 967 DHKKKKFGYKRERVPFVLTQ 986
>pdb|3HHM|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
Length = 1091
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 106 WLKSRT-SEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCF 164
WLK + EI+ +TRS A + ++LG+GDRH SN+M+ + G++ HIDFG
Sbjct: 903 WLKDKNKGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFL 961
Query: 165 EASMNREKFP-EKVPFRLTR 183
+ + + E+VPF LT+
Sbjct: 962 DHKKKKFGYKRERVPFVLTQ 981
>pdb|1W1N|A Chain A, The Solution Structure Of The Fatc Domain Of The Protein
Kinase Tor1 From Yeast
pdb|2KIO|A Chain A, Nmr Structure Of The Oxidized Yeast Tor1 Fatc Domain Bound
To Dpc Micelles At 318k
pdb|2KIT|A Chain A, The Solution Struture Of The Reduced Yeast Tor1 Fatc
Domain Bound To Dpc Micelles At 298k
Length = 33
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 342 LSVKLQVQKLIIQATSHENLCQNYVGWCPFW 372
L V QV KLI QATS E LCQ+Y+GWCPFW
Sbjct: 3 LDVPEQVDKLIQQATSIERLCQHYIGWCPFW 33
>pdb|2X6F|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With 3-Methyladenine
pdb|2X6F|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With 3-Methyladenine
pdb|2X6H|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34
pdb|2X6H|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34
pdb|2X6I|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-kinase Vps34 In Complex With Pik-90
pdb|2X6I|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-kinase Vps34 In Complex With Pik-90
pdb|2X6J|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pik-93
pdb|2X6J|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pik-93
pdb|2X6K|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pi-103
pdb|2X6K|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pi-103
Length = 696
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 51/227 (22%)
Query: 2 QLFGLVNTLLENSRNTSEKDLSIQRYSVIPLSPNSGLIEWVPNCDTLHYLIREYRDARKI 61
QL + TL++ DL + Y V+ S G +++V +C L RE
Sbjct: 454 QLILQMITLMDKLLRRENLDLKLTPYKVLATSSKHGFLQYVDSCTVAEVLARE------- 506
Query: 62 TLNQEHKYMLSFAPDYDHLPLIAKVEVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTN 121
H + P D+ P EV +
Sbjct: 507 --GNIHNFFRKHHP-CDNGPYGISAEVMD------------------------------T 533
Query: 122 YTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRL 181
Y +S A ++ YLLG+GDRH NL+L +GK+ HIDFG + R+ P P +L
Sbjct: 534 YIKSCAGYCVITYLLGVGDRHLDNLLL-TTNGKLFHIDFGYI----LGRDPKPMPPPMKL 588
Query: 182 TRMLVKAMEVSGIEG----NFRSTCENVMQVLRSNRDSVMAMMEAFV 224
++ +V+AM GI FR C LR + + ++ + V
Sbjct: 589 SKEMVEAM--GGISSEHHHEFRKQCYTAYLHLRRHANVMLNLFSLMV 633
>pdb|3L54|A Chain A, Structure Of Pi3k Gamma With Inhibitor
Length = 966
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 746 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 799
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 800 LGIGDRHNDNIMITE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 855
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 856 SGKKTSPHFQKFQDVCVKAYLALRHHTNLLIILF 889
>pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 750 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 803
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG + N + F E+VPF LT + M
Sbjct: 804 LGIGDRHNDNIMITE-TGNLFHIDFG---HINGNYKSFLGINKERVPFVLTPDFLFVMGT 859
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 860 SGKKTSPHFQKFQDICVKAYLALRHHTNLLIILF 893
>pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
pdb|3NZU|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
Length = 954
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 742 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 795
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 796 LGIGDRHNDNIMITE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 851
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 852 SGKKTSPHFQKFQDICVKAYLALRHHTNLLIILF 885
>pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5132799
pdb|3APD|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5108134
pdb|3APF|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5039699
Length = 966
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 752 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 805
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 806 LGIGDRHNDNIMITE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 861
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 862 SGKKTSPHFQKFQDICVKAYLALRHHTNLLIILF 895
>pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine Inhibitor
Length = 959
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 745 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 798
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 799 LGIGDRHNDNIMITE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 854
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 855 SGKKTSPHFQKFQDICVKAYLALRHHTNLLIILF 888
>pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 1
pdb|3QAR|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 32
pdb|3QJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 1
pdb|3QK0|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 82
pdb|3S2A|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With A
Quinoline Inhibitor
pdb|4FHJ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Imidazopyridine 2
pdb|4F1S|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine-Sulfonamide Inhibitor
pdb|4FLH|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Amg511
pdb|4FJY|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Quinoline-Indoline Inhibitor 24f
pdb|4FJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Pyrrolo-Pyridine Inhibitor 63
Length = 960
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 746 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 799
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 800 LGIGDRHNDNIMITE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 855
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 856 SGKKTSPHFQKFQDICVKAYLALRHHTNLLIILF 889
>pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor
Length = 959
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 745 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 798
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 799 LGIGDRHNDNIMITE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 854
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 855 SGKKTSPHFQKFQDICVKAYLALRHHTNLLIILF 888
>pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941
pdb|3L13|A Chain A, Crystal Structures Of Pan-Pi3-Kinase And Dual
Pan-Pi3-KinaseMTOR Inhibitors
pdb|4AOF|A Chain A, Selective Small Molecule Inhibitor Discovered By
Chemoproteomic Assay Platform Reveals Regulation Of Th17
Cell Differentiation By Pi3kgamma
Length = 960
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 746 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 799
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 800 LGIGDRHNDNIMITE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 855
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 856 SGKKTSPHFQKFQDICVKAYLALRHHTNLLIILF 889
>pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor E5e2
pdb|3CSF|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor Dw2
pdb|3L16|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L17|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L08|A Chain A, Structure Of Pi3k Gamma With A Potent Inhibitor:
Gsk2126458
pdb|3OAW|A Chain A, 4-Methylpteridineones As Orally Active And Selective
Pi3kMTOR DUAL Inhibitors
pdb|3PRE|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PRZ|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PS6|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3R7Q|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3- Kinase
pdb|3R7R|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3-Kinase
pdb|3ZVV|A Chain A, Fragment Bound To Pi3kinase Gamma
pdb|3ZW3|A Chain A, Fragment Based Discovery Of A Novel And Selective Pi3
Kinase Inhibitor
pdb|3TL5|A Chain A, Discovery Of Gdc-0980: A Potent, Selective, And Orally
Available Class I Phosphatidylinositol 3-Kinase
(Pi3k)MAMMALIAN TARGET OF RAPAMYCIN (Mtor) Kinase
Inhibitor For The Treatment Of Cancer
pdb|3T8M|A Chain A, Rational Design Of Pi3k-Alpha Inhibitors That Exhibit
Selectivity Over The Pi3k-Beta Isoform
pdb|4GB9|A Chain A, Potent And Highly Selective Benzimidazole Inhibitors Of
Pi3k-Delta
pdb|4G11|A Chain A, X-Ray Structure Of Pi3k-Gamma Bound To A
4-(Morpholin-4-Yl)- (6-Oxo-1,
6-Dihydropyrimidin-2-Yl)amide Inhibitor
pdb|4HLE|A Chain A, Compound 21 (1-alkyl-substituted 1,2,4-triazoles)
Length = 966
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 746 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 799
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 800 LGIGDRHNDNIMITE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 855
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 856 SGKKTSPHFQKFQDICVKAYLALRHHTNLLIILF 889
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|2A4Z|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As604850
pdb|2A5U|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As605240
pdb|2CHW|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110 Alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-39
pdb|2CHX|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-90
pdb|2CHZ|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-93
pdb|3DPD|A Chain A, Achieving Multi-Isoform Pi3k Inhibition In A Series Of
Substituted 3,4-Dihydro-2h-Benzo[1,4]oxazines
pdb|2V4L|A Chain A, Complex Of Human Phosphoinositide 3-kinase Catalytic
Subunit Gamma (p110 Gamma) With Pik-284
pdb|3IBE|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor Bound
To Pi3 Kinase Gamma
pdb|3LJ3|A Chain A, Pi3-Kinase-Gamma With A Pyrrolopyridine-Benzofuran
Inhibitor
pdb|3ML8|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3ML9|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3MJW|A Chain A, Pi3 Kinase Gamma With A Benzofuranone Inhibitor
pdb|3P2B|A Chain A, Crystal Structure Of Pi3k Gamma With
3-(2-Morpholino-6-(Pyridin-3-
Ylamino)pyrimidin-4-Yl)phenol
pdb|3SD5|A Chain A, Crystal Structure Of Pi3k Gamma With
5-(2,4-Dimorpholinopyrimidin-6-
Yl)-4-(Trifluoromethyl)pyridin-2-Amine
pdb|3TJP|A Chain A, Crystal Structure Of Pi3k Gamma With
N6-(3,4-Dimethoxyphenyl)-2-
Morpholino-[4,5'-Bipyrimidine]-2',6-Diamine
pdb|4FUL|A Chain A, Pi3 Kinase Gamma Bound To A Pyrmidine Inhibitor
Length = 966
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 746 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 799
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 800 LGIGDRHNDNIMITE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 855
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 856 SGKKTSPHFQKFQDICVKAYLALRHHTNLLIILF 889
>pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex
Length = 965
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 745 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 798
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 799 LGIGDRHNDNIMITE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 854
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 855 SGKKTSPHFQKFQDICVKAYLALRHHTNLLIILF 888
>pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 750 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 803
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 804 LGIGDRHNDNIMITE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 859
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 860 SGKKTSPHFQKFQDICVKAYLALRHHTNLLIILF 893
>pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors.
pdb|4ANW|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSR--TSEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + T E + + S A + ++
Sbjct: 750 IAKIQ------QSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFV 803
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 804 LGIGDRHNDNIMITE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 859
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 860 SGKKTSPHFQKFQDICVKAYLALRHHTNLLIILF 893
>pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase
Enzymatic Mechanism And Signalling
pdb|1E90|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E7V|A Chain A, Structure Determinants Of Phosphoinositide 3-kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSRT--SEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + E + + S A + ++
Sbjct: 747 IAKIQ------QSTVGNTGAFKDEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFV 800
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 801 LGIGDRHNDNIMISE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 856
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 857 SGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILF 890
>pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 83 IAKVEVFEYALQNTEGNDLA---RVL--WLKSRT--SEIWLERRTNYTRSLAVMSMVGYL 135
IAK++ Q+T GN A VL WLK + E + + S A + ++
Sbjct: 747 IAKIQ------QSTVGNTGAFKDEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFV 800
Query: 136 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKF----PEKVPFRLTRMLVKAMEV 191
LG+GDRH N+M+ +G + HIDFG N + F E+VPF LT + M
Sbjct: 801 LGIGDRHNDNIMISE-TGNLFHIDFGHILG---NYKSFLGINKERVPFVLTPDFLFVMGT 856
Query: 192 SGIEGN-----FRSTCENVMQVLRSNRDSVMAMM 220
SG + + F+ C LR + + ++ +
Sbjct: 857 SGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILF 890
>pdb|3IHY|A Chain A, Human Pik3c3 Crystal Structure
pdb|3IHY|B Chain B, Human Pik3c3 Crystal Structure
pdb|3IHY|C Chain C, Human Pik3c3 Crystal Structure
pdb|3IHY|D Chain D, Human Pik3c3 Crystal Structure
pdb|3IHY|E Chain E, Human Pik3c3 Crystal Structure
Length = 600
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 114 IWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFG 161
I E Y +S A ++ Y+LG+GDRH NL+L + +GK+ HIDFG
Sbjct: 438 ISAEVMDTYVKSCAGYCVITYILGVGDRHLDNLLLTK-TGKLFHIDFG 484
>pdb|3LS8|A Chain A, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4-
Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol
pdb|3LS8|B Chain B, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4-
Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol
Length = 614
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 114 IWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFG 161
I E Y +S A ++ Y+LG+GDRH NL+L + +GK+ HIDFG
Sbjct: 452 ISAEVMDTYVKSCAGYCVITYILGVGDRHLDNLLLTK-TGKLFHIDFG 498
>pdb|1KA9|F Chain F, Imidazole Glycerol Phosphate Synthase
Length = 252
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 139 GDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNF 198
G R P+ L ++ K + + G+ SM+R+ E RLTRM+ +A+ V I
Sbjct: 145 GGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGG 204
Query: 199 RSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFNFNEVP 240
E+ ++ ++ ++ +A +F+F E+P
Sbjct: 205 AGRMEHFLEAFQAGAEAALAA------------SVFHFGEIP 234
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 160 FGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRS 211
FG CF NRE+ ++ M+V E+S I G+FR+T E ++++L +
Sbjct: 480 FGHCFSWGENREE-------AISNMVVALKELS-IRGDFRTTVEYLIKLLET 523
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 160 FGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRS 211
FG CF NRE+ ++ M+V E+S I G+FR+T E ++ +L +
Sbjct: 496 FGHCFSWGENREE-------AISNMVVALKELS-IRGDFRTTVEYLINLLET 539
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 160 FGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRS 211
FG CF NRE+ ++ M+V E+S I G+FR+T E ++ +L +
Sbjct: 480 FGHCFSWGENREE-------AISNMVVALKELS-IRGDFRTTVEYLINLLET 523
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 160 FGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRS 211
FG CF NRE+ ++ M+V E+S I G+FR+T E ++ +L +
Sbjct: 496 FGHCFSWGENREE-------AISNMVVALKELS-IRGDFRTTVEYLINLLET 539
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 160 FGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRS 211
FG CF NRE+ ++ M+V E+S I G+FR+T E ++ +L +
Sbjct: 490 FGHCFSWGENREE-------AISNMVVALKELS-IRGDFRTTVEYLINLLET 533
>pdb|2ACO|A Chain A, Xray Structure Of Blc Dimer In Complex With Vaccenic Acid
pdb|2ACO|B Chain B, Xray Structure Of Blc Dimer In Complex With Vaccenic Acid
Length = 173
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 61 ITLNQEHKYMLSFAPDYDHLPLIAKVEVFE-------YALQNTEGNDLARVLWLK 108
I L++E+++ L PD D+L ++++ A+ EG D+++ +W++
Sbjct: 115 IALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQ 169
>pdb|1QWD|A Chain A, Crystal Structure Of A Bacterial Lipocalin, The Blc Gene
Product From E. Coli
pdb|1QWD|B Chain B, Crystal Structure Of A Bacterial Lipocalin, The Blc Gene
Product From E. Coli
Length = 177
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 61 ITLNQEHKYMLSFAPDYDHLPLIAKVEVFE-------YALQNTEGNDLARVLWLK 108
I L++E+++ L PD D+L ++++ A+ EG D+++ +W++
Sbjct: 119 IALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQ 173
>pdb|3MBT|A Chain A, Structure Of Monomeric Blc From E. Coli
Length = 168
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 61 ITLNQEHKYMLSFAPDYDHLPLIAKVEVFE-------YALQNTEGNDLARVLWLK 108
I L++E+++ L PD D+L ++++ A+ EG D+++ +W++
Sbjct: 101 IALDREYRHALVSGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQ 155
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 143 PSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFR 180
P ++++R SG+++H G + N P KVPFR
Sbjct: 145 PDEVLVNRISGRLIHKPSGRIYHKIFN----PPKVPFR 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,315,846
Number of Sequences: 62578
Number of extensions: 396913
Number of successful extensions: 915
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 48
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)