Query 017398
Match_columns 372
No_of_seqs 218 out of 398
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1348 Asparaginyl peptidases 100.0 1E-130 3E-135 961.8 29.3 330 33-370 26-355 (477)
2 PF01650 Peptidase_C13: Peptid 100.0 1.7E-89 3.7E-94 654.4 23.3 256 60-330 1-256 (256)
3 KOG1349 Gpi-anchor transamidas 100.0 5.7E-66 1.2E-70 487.7 16.6 260 57-331 26-291 (309)
4 COG5206 GPI8 Glycosylphosphati 100.0 1.5E-57 3.3E-62 433.4 17.4 240 58-312 27-269 (382)
5 PF00656 Peptidase_C14: Caspas 99.2 2.6E-11 5.7E-16 111.2 8.0 181 60-302 1-230 (248)
6 KOG1546 Metacaspase involved i 98.5 1.9E-06 4.1E-11 85.7 12.4 132 53-227 57-211 (362)
7 smart00115 CASc Caspase, inter 97.2 0.013 2.8E-07 55.8 14.5 184 58-303 7-214 (241)
8 cd00032 CASc Caspase, interleu 97.0 0.022 4.7E-07 54.1 14.3 183 58-303 8-218 (243)
9 PF14538 Raptor_N: Raptor N-te 92.3 0.15 3.2E-06 46.2 3.7 72 138-228 71-152 (154)
10 PF12770 CHAT: CHAT domain 87.4 0.55 1.2E-05 44.3 3.4 67 133-223 123-201 (287)
11 KOG1017 Predicted uracil phosp 71.2 3.7 8.1E-05 39.5 3.0 23 79-101 204-226 (267)
12 COG4249 Uncharacterized protei 66.9 6.7 0.00014 40.5 4.0 60 167-230 132-207 (380)
13 COG2143 Thioredoxin-related pr 62.3 62 0.0013 30.3 8.9 56 138-213 101-156 (182)
14 PF01364 Peptidase_C25: Peptid 58.6 11 0.00024 37.9 3.9 103 170-302 239-351 (378)
15 TIGR02855 spore_yabG sporulati 57.5 10 0.00022 37.9 3.2 102 113-236 103-222 (283)
16 PF03568 Peptidase_C50: Peptid 55.3 12 0.00025 38.4 3.4 43 168-227 308-350 (383)
17 PF05582 Peptidase_U57: YabG p 51.9 13 0.00028 37.3 2.9 102 113-236 104-223 (287)
18 PF11181 YflT: Heat induced st 47.7 25 0.00054 29.2 3.7 30 75-104 7-36 (103)
19 PRK10834 vancomycin high tempe 42.6 24 0.00051 34.4 3.1 38 59-99 81-118 (239)
20 PF02698 DUF218: DUF218 domain 36.3 36 0.00079 29.3 3.1 35 63-99 41-75 (155)
21 cd06259 YdcF-like YdcF-like. Y 35.0 33 0.00071 29.4 2.6 38 60-99 35-72 (150)
22 cd06183 cyt_b5_reduct_like Cyt 33.4 23 0.0005 32.3 1.4 35 59-100 200-234 (234)
23 KOG1552 Predicted alpha/beta h 30.4 48 0.001 32.8 3.1 42 77-121 112-161 (258)
24 PRK10494 hypothetical protein; 30.3 45 0.00099 32.4 3.0 39 59-99 120-158 (259)
25 KOG3332 N-acetylglucosaminyl p 28.0 1.3E+02 0.0029 29.5 5.6 64 33-105 46-111 (247)
26 COG5155 ESP1 Separase, a prote 26.5 37 0.0008 39.7 1.7 43 168-227 1489-1531(1622)
27 PF14681 UPRTase: Uracil phosp 25.6 50 0.0011 30.9 2.2 24 78-101 135-158 (207)
28 PF10686 DUF2493: Protein of u 25.4 68 0.0015 25.4 2.7 21 62-82 5-25 (71)
29 COG4566 TtrR Response regulato 21.0 1E+02 0.0022 29.6 3.2 36 171-207 78-122 (202)
30 PRK10649 hypothetical protein; 20.8 53 0.0011 35.7 1.6 17 165-181 449-465 (577)
31 COG0657 Aes Esterase/lipase [L 20.3 1.1E+02 0.0024 29.5 3.5 26 76-101 129-158 (312)
No 1
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-130 Score=961.84 Aligned_cols=330 Identities=69% Similarity=1.179 Sum_probs=314.1
Q ss_pred cCccccccccCCCCCCccCCCCCCCCCeEEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCC
Q 017398 33 LPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENP 112 (372)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wAVLVagS~gw~NYRHqADv~~~Yq~Lk~~Gi~denIIlmmyDDiA~n~~Np 112 (372)
+|.-.+.|++| .++++.+|++||||||||+||||||||||||||||+||++|+|+||||||||||||+||+||
T Consensus 26 ~~~la~~~~~p-------~d~~ddggt~waVLVAGSngyyNYRHQADvcHAYqiLrkgGikeEnIvv~MYDDIA~~~~NP 98 (477)
T KOG1348|consen 26 LPLLASGFARP-------ADDDDDGGTRWAVLVAGSNGYYNYRHQADVCHAYQILRKGGIKEENIVVMMYDDIANNEENP 98 (477)
T ss_pred CccccccccCc-------CcCCccCceeEEEEEecCCcccchhhhhhHHHHHHHHHhcCCCchhEEEEEehhhhcCCCCC
Confidence 44444556664 22333448999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeeCCCCCcccCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCC
Q 017398 113 RPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYI 192 (372)
Q Consensus 113 ~pG~i~n~p~g~dvY~gv~iDY~g~~Vt~~nfl~vL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L 192 (372)
+||+|||+|+|+|||+||++||||++||++||++||+|++++++||||||++|+|||||||||+||||||.|+||+++.|
T Consensus 99 rpG~iiN~P~G~DvY~GvpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pGvl~mP~~~~l 178 (477)
T KOG1348|consen 99 RPGVIINRPNGKDVYQGVPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPGVLGMPTSPDL 178 (477)
T ss_pred CCceeecCCCchhhhcCCCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCceEecCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCceEEEEeecccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCcccchhhh
Q 017398 193 YADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLY 272 (372)
Q Consensus 193 ~a~dL~~~L~~M~~~~~Ykklvf~vEAC~SGSmfe~llp~~~NV~aiTASn~~ESSya~yc~~~~~~~~~~~~tcLgD~f 272 (372)
+++||+++|++||+.++||+||||+||||||||||++||+++||||+||||+.||||+||||+++|+||+++.|||||+|
T Consensus 179 ~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psppse~~tcLGDly 258 (477)
T KOG1348|consen 179 YAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSPPSEYSTCLGDLY 258 (477)
T ss_pred hHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCChhhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccCCCcccHHHHHHHHHhhccCCCCCCCCcceecCccccccccccccccCCCCCCccccCCCCCCCCCCCc
Q 017398 273 SIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAV 352 (372)
Q Consensus 273 S~~wme~~~~~~l~~eTl~~qf~~Vk~~t~~~~~~~Shv~~yGd~~~~~~~l~~f~g~~~~~~~~~~~~~~~~~~~~~~~ 352 (372)
|++||||||.|||++|||+|||+.||+||+.+..+|||||||||..|++++|.+|||.+|+++|+++. +.+..++++.+
T Consensus 259 SV~WmeDSd~hdL~kETL~qQYhlVK~rt~~s~s~gsHVmqyGd~~iske~l~lfqG~~pa~~nf~l~-~~s~~~~s~~~ 337 (477)
T KOG1348|consen 259 SVNWMEDSDVHDLKKETLHQQYHLVKKRTNTSYSYGSHVMQYGDKTISKEKLMLFQGMKPANENFTLP-ASSHKSPSGLT 337 (477)
T ss_pred eeeeeccCccccchHHHHHHHHHHHHHhcCCCCCCcceeeecCcchhhHHHHHHHcCCCcccCCCCCC-ccCcCCccccC
Confidence 99999999999999999999999999999988779999999999999999999999999999999887 56666678999
Q ss_pred CCCChhHHHHHHHHHhhc
Q 017398 353 NQRDADLLHFWDKVCIQQ 370 (372)
Q Consensus 353 ~~rd~~l~~~~~~~~~a~ 370 (372)
|||||+|++||+||++++
T Consensus 338 n~rD~~L~~l~~k~rka~ 355 (477)
T KOG1348|consen 338 NQRDAPLLHLWRKYRKAN 355 (477)
T ss_pred CCCCccHHHHHHHHhcCc
Confidence 999999999999999986
No 2
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=100.00 E-value=1.7e-89 Score=654.38 Aligned_cols=256 Identities=55% Similarity=0.962 Sum_probs=247.9
Q ss_pred eEEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCccccCCCCCC
Q 017398 60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDV 139 (372)
Q Consensus 60 ~wAVLVagS~gw~NYRHqADv~~~Yq~Lk~~Gi~denIIlmmyDDiA~n~~Np~pG~i~n~p~g~dvY~gv~iDY~g~~V 139 (372)
+||||||||++|+|||||||+||+||+||++|+|+|||||||||||||||+||+||+||++|+|.|+|+||+|||+|.+|
T Consensus 1 ~wAvlvagS~~~~NYRh~ad~~~~Y~~l~~~G~~~~~Iil~~~dd~a~~~~Np~~g~i~~~~~~~n~y~~~~iDY~g~~v 80 (256)
T PF01650_consen 1 NWAVLVAGSNGWFNYRHQADVCHAYQLLKRNGIPDENIILMMYDDIACNPRNPFPGKIFNDPDGTNVYKGVEIDYRGEDV 80 (256)
T ss_pred CEEEEEeccCCceeeeEehHHHHHHHHHHHcCCCCceEEEEecCCccchhhCCCCceEEeCCCcccccCCcccccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCCceEEEEeec
Q 017398 140 TVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEA 219 (372)
Q Consensus 140 t~~nfl~vL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~Ykklvf~vEA 219 (372)
|+++|++||+|+++ + +++|||+++++|+|||||+||||+|+|+||+.+.|+++||+++|++|+++++||||||++||
T Consensus 81 ~~~~fl~vL~G~~~-~--~~~kvl~s~~~D~vfiy~~~HG~~~~l~~~~~~~l~~~~L~~~L~~m~~~~~y~~lv~~vea 157 (256)
T PF01650_consen 81 TPENFLNVLTGDKS-V--PSGKVLNSTENDNVFIYFTGHGGPGFLKFPDGEELTADDLADALDKMHEKKRYKKLVFVVEA 157 (256)
T ss_pred CHHHHHHHhcCCCC-C--CccccccCCCCCeEEEEEeccCCCCcccCCCcccccHHHHHHHHHHHHhhCCcceEEEEEec
Confidence 99999999999999 4 57899999999999999999999999999988889999999999999999999999999999
Q ss_pred ccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCcccchhhhhhhhcccccccCCCcccHHHHHHHHHh
Q 017398 220 CESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKT 299 (372)
Q Consensus 220 C~SGSmfe~llp~~~NV~aiTASn~~ESSya~yc~~~~~~~~~~~~tcLgD~fS~~wme~~~~~~l~~eTl~~qf~~Vk~ 299 (372)
|||||||+. |++++||++||||+++|+||+|+|+ +++++|||||+||++||++++.++++++||.+||+.||+
T Consensus 158 C~SGs~~~~-L~~~~nv~~iTAa~~~e~Sy~~~~~------~~~~~~~l~d~fs~~~m~~~~~~~~~~~Tl~~~f~~v~~ 230 (256)
T PF01650_consen 158 CYSGSFFEG-LLKSPNVYVITAANADESSYGCYCS------DDSIGTYLGDAFSYNWMEDSDSHPLSEETLDDQFEYVKR 230 (256)
T ss_pred ccccchhhc-cCCCCCEEEEecCCccccccccccc------ccccccEeHHHHHHHhhhhhccCCccccCHHHHHHHHHH
Confidence 999999999 6688999999999999999999993 368999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCcceecCcccccccccccccc
Q 017398 300 RTASYNSYGSHVMQYGDIGLSKNNLFTYLGT 330 (372)
Q Consensus 300 ~t~~~~~~~Shv~~yGd~~~~~~~l~~f~g~ 330 (372)
+|.. |||++|||+++.+++|++|||+
T Consensus 231 ~~~~-----shv~~~gd~s~~~~~v~~f~g~ 256 (256)
T PF01650_consen 231 KTTG-----SHVQQYGDPSIPQLPVSEFQGT 256 (256)
T ss_pred hccc-----chHHhcCCCCccccCHHHhcCC
Confidence 9975 9999999999999999999995
No 3
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-66 Score=487.74 Aligned_cols=260 Identities=27% Similarity=0.490 Sum_probs=232.3
Q ss_pred CCCeEEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCC-CCcccC-CccccC
Q 017398 57 VGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPH-GDDVYK-GVPKDY 134 (372)
Q Consensus 57 ~~~~wAVLVagS~gw~NYRHqADv~~~Yq~Lk~~Gi~denIIlmmyDDiA~n~~Np~pG~i~n~p~-g~dvY~-gv~iDY 134 (372)
+++||||||++||+|+||||.|||+.+|+.+|+.||||+|||+|++||+|||+|||+||.+|++.+ +.|+|. .|++||
T Consensus 26 htnNwAVLv~tSRfwfNYRH~aNvl~~YrsvKrlGipDsqIilmladd~acn~RN~~pg~Vy~n~~~~~nlygd~vevdy 105 (309)
T KOG1349|consen 26 HTNNWAVLVCTSRFWFNYRHVANVLSVYRSVKRLGIPDSQIILMLADDMACNSRNPRPGTVYNNENHALNLYGDDVEVDY 105 (309)
T ss_pred ccCceEEEEecchhhhhHHHHHHHHHHHHHHHHcCCCcccEEEEeccccccccCCCCCcceeccccccccccCCcceeec
Confidence 589999999999999999999999999999999999999999999999999999999999999886 689996 678999
Q ss_pred CCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCCceEE
Q 017398 135 TGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLV 214 (372)
Q Consensus 135 ~g~~Vt~~nfl~vL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~Ykklv 214 (372)
+|.+||+|||+++|+|+.+.-||+|+| |.+++.+|||||+|||||+|||||||.++|+.+||++++++|++++||++|+
T Consensus 106 rgyevtvEnflr~LTgR~~~~tprSKr-lltDe~SNIlIYmtGHGgd~FlKFqd~eelts~dLadai~qm~e~~Ryneil 184 (309)
T KOG1349|consen 106 RGYEVTVENFLRVLTGRHPNNTPRSKR-LLTDEGSNILIYLTGHGGDGFLKFQDAEELTSDDLADAIQQMWEKKRYNEIL 184 (309)
T ss_pred ccchhHHHHHHHHHcCCCCCCCchhhh-hcccCCCcEEEEEccCCCccceecccHHHhhhHHHHHHHHHHHHhhhhceEE
Confidence 999999999999999999999999877 5589999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCcccchhhhhhhhccccccc-CCCcccHHHH
Q 017398 215 FYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIH-NLRTETLHQQ 293 (372)
Q Consensus 215 f~vEAC~SGSmfe~llp~~~NV~aiTASn~~ESSya~yc~~~~~~~~~~~~tcLgD~fS~~wme~~~~~-~l~~eTl~~q 293 (372)
|++|+|+|.||++++.. |||+|+++|..+|+||+++.+ +++|.++-|.|++..++..++. .....||.++
T Consensus 185 ~miDTCQaasly~~~~s--PNVLav~SS~~ge~SySh~~d-------~~Igv~vIDrftyy~l~flek~~~~~~~~l~dl 255 (309)
T KOG1349|consen 185 FMIDTCQAASLYERFYS--PNVLAVASSLVGEPSYSHHSD-------SDIGVYVIDRFTYYTLEFLEKGIGAKNRTLQDL 255 (309)
T ss_pred EEeeccchHHHHHhhcC--CCeEEEeecccCCcccccCCC-------cccceeeeccchHHHHHHHHhcccchhhhHHHH
Confidence 99999999999999754 599999999999999999976 4899999999999988877664 3334589999
Q ss_pred HHHHHhhccCCCCCCCCcceecCc---cccccccccccccC
Q 017398 294 YELVKTRTASYNSYGSHVMQYGDI---GLSKNNLFTYLGTN 331 (372)
Q Consensus 294 f~~Vk~~t~~~~~~~Shv~~yGd~---~~~~~~l~~f~g~~ 331 (372)
|+..-.+.- +|||-.--|+ ...+-++.+|+|..
T Consensus 256 ~~s~~~~~~-----~St~gvr~dl~~r~~~~v~itDFFg~v 291 (309)
T KOG1349|consen 256 FDSCPKRLL-----GSTPGVRTDLYQRDPKDVLITDFFGSV 291 (309)
T ss_pred HHhCChhhh-----cCCcCcccccccCCcccceeeeecccc
Confidence 998766554 4776443343 33455677888764
No 4
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-57 Score=433.36 Aligned_cols=240 Identities=25% Similarity=0.447 Sum_probs=216.2
Q ss_pred CCeEEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCC-CCcccC-CccccCC
Q 017398 58 GTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPH-GDDVYK-GVPKDYT 135 (372)
Q Consensus 58 ~~~wAVLVagS~gw~NYRHqADv~~~Yq~Lk~~Gi~denIIlmmyDDiA~n~~Np~pG~i~n~p~-g~dvY~-gv~iDY~ 135 (372)
++|||||+++||+|+||||.|||+.+|..+|+.||||++||+|.|||.|||.||-+||.+|++.+ +.++|. .++|||+
T Consensus 27 tnNwAvLlstSRfwfNYRHmANVl~~Yr~vkrlGipDsQIilm~~dd~acnsRnlfpgsvf~N~Dra~dlyge~~eidY~ 106 (382)
T COG5206 27 TNNWAVLLSTSRFWFNYRHMANVLVFYRVVKRLGIPDSQIILMSYDDQACNSRNLFPGSVFNNSDRAGDLYGEDSEIDYS 106 (382)
T ss_pred CCceEEEEecccceeehhhhhhHHHHHHHHHHcCCCcceEEEEechhhhhhhcccCCcccccCcccccceeCcccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999887 567774 6799999
Q ss_pred CCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 017398 136 GEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVF 215 (372)
Q Consensus 136 g~~Vt~~nfl~vL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~Ykklvf 215 (372)
|.+||+++|.+.|+.+...-+|.|++ +..++++||||||+||||++||+|+|-++++.+||++++.+|+++|||++++|
T Consensus 107 gyevTve~firLLt~r~~en~p~sKr-lltdE~SNIfIYmtGHGgd~FlKFqdaeemtseDladai~ql~~~kRyNeIlf 185 (382)
T COG5206 107 GYEVTVEVFIRLLTARSGENHPKSKR-LLTDESSNIFIYMTGHGGDAFLKFQDAEEMTSEDLADAISQLAAKKRYNEILF 185 (382)
T ss_pred cccchHHHHHHHHHhhccCCChhhhh-hcccccCcEEEEEccCCCccceecccHHHhhhHHHHHHHHHHHHhhhhceEEE
Confidence 99999999999999888877777765 56799999999999999999999999999999999999999999999999999
Q ss_pred EeecccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCcccchhhhhhhhccccccc-CCCcccHHHHH
Q 017398 216 YLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIH-NLRTETLHQQY 294 (372)
Q Consensus 216 ~vEAC~SGSmfe~llp~~~NV~aiTASn~~ESSya~yc~~~~~~~~~~~~tcLgD~fS~~wme~~~~~-~l~~eTl~~qf 294 (372)
++|+||+.+|+++... +||+|+.+|.-+||||+++.+. +++.-.-|.|++.+++..+.- -.++.||++++
T Consensus 186 miDTCQAnaly~k~ys--PNvLavgsSeig~ssyShhsd~-------~IgvaVIDrFty~~l~fle~id~~skltlqDL~ 256 (382)
T COG5206 186 MIDTCQANALYDKSYS--PNVLAVGSSEIGQSSYSHHSDS-------LIGVAVIDRFTYFFLKFLEKIDIGSKLTLQDLL 256 (382)
T ss_pred EeeccccchhhhhccC--CceEEEeccccCCccccccchh-------hhhHHHhhcchHHHHHHHhhcCcCCeeEHHHHH
Confidence 9999999999998754 4999999999999999999864 788888899999888776653 34678999988
Q ss_pred HHHHhhccCCCCCCCCcc
Q 017398 295 ELVKTRTASYNSYGSHVM 312 (372)
Q Consensus 295 ~~Vk~~t~~~~~~~Shv~ 312 (372)
...-. ...+|||-
T Consensus 257 ~s~n~-----e~ihS~~g 269 (382)
T COG5206 257 ASLNK-----EPIHSHVG 269 (382)
T ss_pred HhcCc-----ccccCCCC
Confidence 76533 23568883
No 5
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=99.22 E-value=2.6e-11 Score=111.17 Aligned_cols=181 Identities=23% Similarity=0.305 Sum_probs=125.7
Q ss_pred eEEEEEeccCCCC-Cchh--hhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCccccCCC
Q 017398 60 RWAVLLAGSNGFW-NYRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTG 136 (372)
Q Consensus 60 ~wAVLVagS~gw~-NYRH--qADv~~~Yq~Lk~~Gi~denIIlmmyDDiA~n~~Np~pG~i~n~p~g~dvY~gv~iDY~g 136 (372)
+|||||+-+.+=. +-++ ..|+-.+.+.|++.|++.++| ++ ++
T Consensus 1 ~~AliIg~~~y~~~~~L~~~~~D~~~~~~~L~~~gf~~~~~-l~--~~-------------------------------- 45 (248)
T PF00656_consen 1 KRALIIGVNYYQNPPPLPGAVNDAEAMAEALEKLGFDVENI-LI--DN-------------------------------- 45 (248)
T ss_dssp EEEEEEEESSTSSTCHCTTHHHHHHHHHHHHHHTTEEEEEE-EE--ES--------------------------------
T ss_pred CEEEEEEeeCCCCCCCCCCHHHHHHHHHHHHHHcCCceeec-cc--cc--------------------------------
Confidence 5899999886411 2333 379999999999999999999 32 32
Q ss_pred CCCCHHHHHHHHcCCCCCCCCCCCccc-cCCCCCeEEEEeecCCCC--C----cccCCCCCCCCHHH---HHHHHHHHHH
Q 017398 137 EDVTVENFFAVILGNKTALTGGSGKVV-DSGPNDHIFIFYSDHGGP--G----VLGMPTSRYIYADE---LIDVLKKKHA 206 (372)
Q Consensus 137 ~~Vt~~nfl~vL~G~~~~~t~~s~kvl-~S~~~D~VFIY~tgHGg~--g----~l~fpd~~~L~a~d---L~~~L~~M~~ 206 (372)
+|.+++.+.|+ .++ ...++|.++|||+|||.. + .+.-.++..+..+. +.+.|..+..
T Consensus 46 --~t~~~i~~~l~-----------~l~~~~~~~D~~~~yfsGHG~~~~~~~~~~~~~~d~~~~~~d~~~~~~~~l~~~~~ 112 (248)
T PF00656_consen 46 --ATRANILKALR-----------ELLQRAQPGDSVVFYFSGHGIQVDGEGGDEDSGYDGYLLPLDANLILDDELRDLLC 112 (248)
T ss_dssp --SSHHHHHHHHH-----------HHHTSGGTCSEEEEEEESEEETETTCCSTEEEETSSEEEEHHHHEEHHHHTSTTTT
T ss_pred --hHHHHHHHHHh-----------hhhccCCCCCeeEEEEeccccccCCccCcccccccceeeecchhhhHHHHHhhhhh
Confidence 68889999888 122 123789999999999965 1 11111333344444 6777776655
Q ss_pred cC-CCc-eEEEEeecccccccccccC----------------------------CCCCcEEEEeecCCCCccccccCCCC
Q 017398 207 SG-NYK-SLVFYLEACESGSIFEGLL----------------------------PEGLNIYATTASNAEESSWGTYCPGE 256 (372)
Q Consensus 207 ~~-~Yk-klvf~vEAC~SGSmfe~ll----------------------------p~~~NV~aiTASn~~ESSya~yc~~~ 256 (372)
+. .-+ + +|++|+|+||.+..... +...++++++|+.++|.||.. ++
T Consensus 113 ~~~~~~~k-~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~~~~~s~e~--~~- 188 (248)
T PF00656_consen 113 KSLPKKPK-LFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPPEDPNRSDVPSPSGFIVLSASRPGQTSYED--SP- 188 (248)
T ss_dssp GGGTTS-E-EEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCCSSCCSEEEETTTSEEEEESSSTTBCEEEE--CT-
T ss_pred hhccCCcc-EEeeccccCCccCCccccccccccccccccccccccccccccccccCCCCcEEEEeccccceeecc--cC-
Confidence 52 222 4 99999999999866310 122489999999999999998 11
Q ss_pred CCCCCCCCcccchhhhhhhhccccccc------CCCcccHHHHHHHHHhhcc
Q 017398 257 IPGPPPEYSTCLGDLYSIAWMEDSDIH------NLRTETLHQQYELVKTRTA 302 (372)
Q Consensus 257 ~~~~~~~~~tcLgD~fS~~wme~~~~~------~l~~eTl~~qf~~Vk~~t~ 302 (372)
.. |.+|+.++++....+ .....+|.+.+..|++++.
T Consensus 189 -----~~-----~g~ft~~L~~~L~~~~~~~~~~~~~~~l~~~~~~v~~~~~ 230 (248)
T PF00656_consen 189 -----GS-----GGLFTYALLEALKGNAADDPNQSWDELLEELLTEVNQKVA 230 (248)
T ss_dssp -----TT-----EEHHHHHHHHHHHHHTTTSTTCCTTSBHHHHHHHHHHHHH
T ss_pred -----cc-----CHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHhHCC
Confidence 12 358999988866332 2235799999999999884
No 6
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.9e-06 Score=85.73 Aligned_cols=132 Identities=22% Similarity=0.317 Sum_probs=89.9
Q ss_pred CCCCCCCeEEEEEeccCCCCCchhh-----hHHHHHHHHH-HhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcc
Q 017398 53 DDDSVGTRWAVLLAGSNGFWNYRHQ-----ADICHAYQLL-RKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDV 126 (372)
Q Consensus 53 ~~~~~~~~wAVLVagS~gw~NYRHq-----ADv~~~Yq~L-k~~Gi~denIIlmmyDDiA~n~~Np~pG~i~n~p~g~dv 126 (372)
...-.+++-||||.-+ |-|=+++ .||-.|.+.| .+.||+.|+|++|.-+| ++|. .
T Consensus 57 ~~~~~gkrrAvLiGIN--Y~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~-----~s~~-----~------- 117 (362)
T KOG1546|consen 57 YPQMAGKRRAVLIGIN--YPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTD-----ESPV-----R------- 117 (362)
T ss_pred CccccccceEEEEeec--CCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCC-----Cccc-----c-------
Confidence 3445688999999853 2222332 5899999988 56999999999887553 2221 1
Q ss_pred cCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC-------CcccC------CCCC---
Q 017398 127 YKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP-------GVLGM------PTSR--- 190 (372)
Q Consensus 127 Y~gv~iDY~g~~Vt~~nfl~vL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~-------g~l~f------pd~~--- 190 (372)
--|.+|+++.|+ +. |....++|-+|+=|||||+. ..-+| -|-+
T Consensus 118 -----------~PT~~Nir~Al~---wL-------V~~aq~gD~LvfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G 176 (362)
T KOG1546|consen 118 -----------IPTGKNIRRALR---WL-------VESAQPGDSLVFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQG 176 (362)
T ss_pred -----------cCcHHHHHHHHH---HH-------HhcCCCCCEEEEEecCCCCcCCCCCCCCCCCCcceeecccccccc
Confidence 136678888888 22 22346789999999999983 12222 1222
Q ss_pred -CCCHHHHHHHHHHHHHcCCCceEEEEeeccccccccc
Q 017398 191 -YIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (372)
Q Consensus 191 -~L~a~dL~~~L~~M~~~~~Ykklvf~vEAC~SGSmfe 227 (372)
.|+.+++....+.+ ..=-+|-.++|+|+||++.+
T Consensus 177 ~iIdDe~~r~lV~pl---p~G~~lt~I~DSCHSGgliD 211 (362)
T KOG1546|consen 177 PIIDDEIFRILVRPL---PKGCKLTAISDSCHSGGLID 211 (362)
T ss_pred cccchHHHHHHHhcc---CCCceEEEEeecccCCCccc
Confidence 56666666666665 33458999999999999988
No 7
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=97.16 E-value=0.013 Score=55.80 Aligned_cols=184 Identities=17% Similarity=0.237 Sum_probs=111.1
Q ss_pred CCeEEEEEeccCCCC-Cchhh--hHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCccccC
Q 017398 58 GTRWAVLLAGSNGFW-NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDY 134 (372)
Q Consensus 58 ~~~wAVLVagS~gw~-NYRHq--ADv~~~Yq~Lk~~Gi~denIIlmmyDDiA~n~~Np~pG~i~n~p~g~dvY~gv~iDY 134 (372)
....|+||+-+++-. .-|.- .|+-.+-++|++.|+. |..+.
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~-----V~~~~------------------------------- 50 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYE-----VHVKN------------------------------- 50 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCE-----EEEec-------------------------------
Confidence 477899998887521 11222 3899999999999992 22222
Q ss_pred CCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCCCHHHHHHHHHHHH-HcCCCceE
Q 017398 135 TGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNYKSL 213 (372)
Q Consensus 135 ~g~~Vt~~nfl~vL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~Ykkl 213 (372)
++|.+.+.+.|.-- . .+ .+-...|-+++||.+||+.++|.-.|+..+.-++|.+.|..-. ..-.-|=-
T Consensus 51 ---dlt~~em~~~l~~~-~------~~-~~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~c~~L~~kPK 119 (241)
T smart00115 51 ---NLTAEEMLEELKEF-A------ER-PEHSDSDSFVCVLLSHGEEGGIYGTDHSPLPLDEIFSLFNGDNCPSLAGKPK 119 (241)
T ss_pred ---CCCHHHHHHHHHHH-H------hc-cccCCCCEEEEEEcCCCCCCeEEEecCCEEEHHHHHHhccccCChhhcCCCc
Confidence 35677777777621 1 01 1123468899999999999988877776677777777663210 11123456
Q ss_pred EEEeecccccccccc--------------------cCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCcccchhhhh
Q 017398 214 VFYLEACESGSIFEG--------------------LLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYS 273 (372)
Q Consensus 214 vf~vEAC~SGSmfe~--------------------llp~~~NV~aiTASn~~ESSya~yc~~~~~~~~~~~~tcLgD~fS 273 (372)
+|+|+||...-+-.+ .+|...++++.=|+.++.-||-. +.. |-+|.
T Consensus 120 lffiqACRg~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~D~li~ysT~pG~va~r~----------~~~----gS~fi 185 (241)
T smart00115 120 LFFIQACRGDELDGGVPVEDDVDDPPTEFEDDAIYKIPVEADFLAAYSTTPGYVSWRN----------PTR----GSWFI 185 (241)
T ss_pred EEEEeCCCCCCCCCCeecccccccccccccccccccCCCcCcEEEEEeCCCCeEeecC----------CCC----CchHH
Confidence 899999975422111 12333356666666666555432 112 22344
Q ss_pred hhhcccccccCCCcccHHHHHHHHHhhccC
Q 017398 274 IAWMEDSDIHNLRTETLHQQYELVKTRTAS 303 (372)
Q Consensus 274 ~~wme~~~~~~l~~eTl~~qf~~Vk~~t~~ 303 (372)
-...+-...+ -..+.|.+++..|.+++..
T Consensus 186 ~~L~~~l~~~-~~~~~l~~ilt~V~~~V~~ 214 (241)
T smart00115 186 QSLCQVLKEY-ARSLDLLDILTEVNRKVAV 214 (241)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHhh
Confidence 3333322222 2567899999999999975
No 8
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=97.00 E-value=0.022 Score=54.14 Aligned_cols=183 Identities=15% Similarity=0.206 Sum_probs=113.4
Q ss_pred CCeEEEEEeccCCCC--Cchh--hhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccCCcccc
Q 017398 58 GTRWAVLLAGSNGFW--NYRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKD 133 (372)
Q Consensus 58 ~~~wAVLVagS~gw~--NYRH--qADv~~~Yq~Lk~~Gi~denIIlmmyDDiA~n~~Np~pG~i~n~p~g~dvY~gv~iD 133 (372)
....|+||.-+++-. .=|. ..|+-.+-.+|++.|+. +. .+.
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~---V~--~~~------------------------------ 52 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYE---VE--VKN------------------------------ 52 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCE---EE--EeC------------------------------
Confidence 578899998887643 1232 37889999999999992 22 222
Q ss_pred CCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCCCHHHHHHHHHHHH-HcCCCce
Q 017398 134 YTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNYKS 212 (372)
Q Consensus 134 Y~g~~Vt~~nfl~vL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~-~~~~Ykk 212 (372)
++|.+.+.+.|..-.. + +....|-+++||.+||..+.|.-.|...+.-++|.+.|..-. .+-.-|=
T Consensus 53 ----nlt~~~~~~~l~~f~~-------~--~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kP 119 (243)
T cd00032 53 ----NLTAEEILEELKEFAS-------P--DHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKP 119 (243)
T ss_pred ----CCCHHHHHHHHHHHHh-------c--cCCCCCeeEEEECCCCCCCEEEEecCcEEEHHHHHHhhccCCCccccCCC
Confidence 3567777777762110 0 224567889999999999988777766677777776665211 1223456
Q ss_pred EEEEeecccccccccc-----------------------cCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCCcccch
Q 017398 213 LVFYLEACESGSIFEG-----------------------LLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLG 269 (372)
Q Consensus 213 lvf~vEAC~SGSmfe~-----------------------llp~~~NV~aiTASn~~ESSya~yc~~~~~~~~~~~~tcLg 269 (372)
.+|+|+||...-.-.+ ..|...++++.=|+.++.-||-.- .. |
T Consensus 120 Kl~~iqACRg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~lv~ysT~pG~~a~r~~----------~~----g 185 (243)
T cd00032 120 KLFFIQACRGDELDLGVEVDSGADEPPDVETEAEDDAVQTIPVEADFLVAYSTVPGYVSWRNT----------KK----G 185 (243)
T ss_pred cEEEEECCCCCcCCCceeccCccccccccccccccccccCCCCcccEEEEecCCCCeEeecCC----------CC----C
Confidence 7999999987654221 123334666666666666555321 11 2
Q ss_pred hhhhhhhcccccccCCCcccHHHHHHHHHhhccC
Q 017398 270 DLYSIAWMEDSDIHNLRTETLHQQYELVKTRTAS 303 (372)
Q Consensus 270 D~fS~~wme~~~~~~l~~eTl~~qf~~Vk~~t~~ 303 (372)
-+|.-.+.+... +.-..+.|.+++..|.+++..
T Consensus 186 S~fi~~l~~~l~-~~~~~~~l~~il~~V~~~V~~ 218 (243)
T cd00032 186 SWFIQSLCQVLR-KYAHSLDLLDILTKVNRKVAE 218 (243)
T ss_pred CEeHHHHHHHHH-HhCCCCcHHHHHHHHHHHHhh
Confidence 233333333222 122357899999999998875
No 9
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=92.35 E-value=0.15 Score=46.23 Aligned_cols=72 Identities=18% Similarity=0.333 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCC------cccCCCCC----CCCHHHHHHHHHHHHHc
Q 017398 138 DVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG------VLGMPTSR----YIYADELIDVLKKKHAS 207 (372)
Q Consensus 138 ~Vt~~nfl~vL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g------~l~fpd~~----~L~a~dL~~~L~~M~~~ 207 (372)
+.|++.+.+.+..- -++.+++.|.+.|.|||-|. +..|...- .++-.||.+.+..
T Consensus 71 dpt~e~~~~~~~~~-----------R~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~---- 135 (154)
T PF14538_consen 71 DPTVEDLKRLCQSL-----------RRNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGS---- 135 (154)
T ss_pred CCCHHHHHHHHHHH-----------HhhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCC----
Confidence 56888888877722 12344689999999999984 44554432 3777888777765
Q ss_pred CCCceEEEEeecccccccccc
Q 017398 208 GNYKSLVFYLEACESGSIFEG 228 (372)
Q Consensus 208 ~~Ykklvf~vEAC~SGSmfe~ 228 (372)
-.+||.|...||++++.
T Consensus 136 ----Psi~V~DC~~AG~il~~ 152 (154)
T PF14538_consen 136 ----PSIYVFDCSNAGSILNA 152 (154)
T ss_pred ----CEEEEEECCcHHHHHHh
Confidence 78999999999998865
No 10
>PF12770 CHAT: CHAT domain
Probab=87.43 E-value=0.55 Score=44.29 Aligned_cols=67 Identities=22% Similarity=0.357 Sum_probs=46.6
Q ss_pred cCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCC-------cccCC-----CCCCCCHHHHHHH
Q 017398 133 DYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG-------VLGMP-----TSRYIYADELIDV 200 (372)
Q Consensus 133 DY~g~~Vt~~nfl~vL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g-------~l~fp-----d~~~L~a~dL~~~ 200 (372)
-..+.+.|.++|++.|... .-=.|.|+|||... .|.+. +...|++.||..
T Consensus 123 ~~~~~~at~~~l~~~l~~~-----------------~~~ilH~a~Hg~~~~~~~~~~~l~l~~~~~~~~~~l~~~~l~~- 184 (287)
T PF12770_consen 123 VLVGPEATKDALLEALERR-----------------GPDILHFAGHGTFDPDPPDQSGLVLSDESGQEDGLLSAEELAQ- 184 (287)
T ss_pred EeeccCCCHHHHHhhhccC-----------------CCCEEEEEcccccCCCCCCCCEEEEeccCCCCCcccCHHHHHh-
Confidence 4567778888888888311 11368999999876 67775 345699999988
Q ss_pred HHHHHHcCCCceEEEEeeccccc
Q 017398 201 LKKKHASGNYKSLVFYLEACESG 223 (372)
Q Consensus 201 L~~M~~~~~Ykklvf~vEAC~SG 223 (372)
++- .+ --++++-||+|+
T Consensus 185 l~l---~~---~~lVvLsaC~s~ 201 (287)
T PF12770_consen 185 LDL---RG---PRLVVLSACESA 201 (287)
T ss_pred hcC---CC---CCEEEecCcCCc
Confidence 221 11 336689999999
No 11
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=71.15 E-value=3.7 Score=39.46 Aligned_cols=23 Identities=35% Similarity=0.746 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEe
Q 017398 79 DICHAYQLLRKGGLKDENIIVFM 101 (372)
Q Consensus 79 Dv~~~Yq~Lk~~Gi~denIIlmm 101 (372)
-||.|-..||++|+||++|||..
T Consensus 204 TV~~Av~VL~EhgVp~s~IiL~s 226 (267)
T KOG1017|consen 204 TVCKAVEVLKEHGVPDSNIILVS 226 (267)
T ss_pred cHHHHHHHHHHcCCCcccEEEEE
Confidence 79999999999999999999874
No 12
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=66.92 E-value=6.7 Score=40.54 Aligned_cols=60 Identities=27% Similarity=0.478 Sum_probs=37.8
Q ss_pred CCCeEEEEeecCCCCC-------cccCCCC--------C-CCCHHHHHHHHHHHHHcCCCceEEEEeecccccccccccC
Q 017398 167 PNDHIFIFYSDHGGPG-------VLGMPTS--------R-YIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL 230 (372)
Q Consensus 167 ~~D~VFIY~tgHGg~g-------~l~fpd~--------~-~L~a~dL~~~L~~M~~~~~Ykklvf~vEAC~SGSmfe~ll 230 (372)
+.|++++||+|||... ++.|-.. + -+... .....+|. ..-++-+..+++|++|.+|....
T Consensus 132 ~~d~~~~~fsG~g~~~~~d~~~~lia~~t~p~~~a~~~~~~~s~~---~~~~~~~~-~~~~~ql~~~d~~~~~~~~~~~~ 207 (380)
T COG4249 132 PADTILFFFSGHGATPGADGRAYLIAFDTRPGAVAYDGEGGISPY---SVAQALHL-SEPGNQLVDLDACVRGDVFKATA 207 (380)
T ss_pred hhhhhhheeeccccccCCCCceeEEeecCChhhhcccCCCcccHH---HHHHHHHh-ccCCceeehhhhhcchhhhcccc
Confidence 3799999999999862 2333211 1 12222 33333333 34566678999999999998754
No 13
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.33 E-value=62 Score=30.28 Aligned_cols=56 Identities=29% Similarity=0.535 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCCceE
Q 017398 138 DVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSL 213 (372)
Q Consensus 138 ~Vt~~nfl~vL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~Ykkl 213 (372)
.++-+.+.+.+. ++|+|+ +.|.||-|.+++..|. ++..+++..+|+.. +++.|+++
T Consensus 101 ~~s~~ELa~kf~-------------vrstPt----fvFfdk~Gk~Il~lPG--Y~ppe~Fl~vlkYV-a~g~ykd~ 156 (182)
T COG2143 101 KMSTEELAQKFA-------------VRSTPT----FVFFDKTGKTILELPG--YMPPEQFLAVLKYV-ADGKYKDT 156 (182)
T ss_pred eecHHHHHHHhc-------------cccCce----EEEEcCCCCEEEecCC--CCCHHHHHHHHHHH-HHHHHhhh
Confidence 344556666555 356765 4556888889999986 79999999999986 45666664
No 14
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=58.64 E-value=11 Score=37.86 Aligned_cols=103 Identities=21% Similarity=0.225 Sum_probs=48.0
Q ss_pred eEEEEeecCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCCceEEEEeeccccccc-ccc-------c--CCCCCcEEEE
Q 017398 170 HIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSI-FEG-------L--LPEGLNIYAT 239 (372)
Q Consensus 170 ~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~Ykklvf~vEAC~SGSm-fe~-------l--lp~~~NV~ai 239 (372)
..||.|.|||++..+ ..+.|+.+++. .+ ++..|--+++.-||+.|.+ ... + .|++--|-.+
T Consensus 239 ~~~v~y~GHG~~~~w---~~~~~~~~d~~----~l--~N~~~~p~~~s~~C~~g~fd~~~~~sl~E~~v~~~~gGAia~i 309 (378)
T PF01364_consen 239 AGFVNYFGHGSPTSW---ADEDFTSSDIS----NL--NNKNKLPVVISAACYTGNFDDPDNPSLGEALVLNPNGGAIAFI 309 (378)
T ss_dssp -SEEEEES-B-SSBB---TTT--BTTTGG----G-----TT---EEEEESSSTT-TTSSS---HHHHHHTTEE-S-SEEE
T ss_pred CeEEEEecCCchhhc---ccCcccHhHHH----Hh--cCCCCceEEEEeECCCcCCCCCCCCcHHHHheECCCCcEEEEE
Confidence 468899999998855 11223333332 22 2233567888889999988 332 1 2222234555
Q ss_pred eecCCCCccccccCCCCCCCCCCCCcccchhhhhhhhcccccccCCCcccHHHHHHHHHhhcc
Q 017398 240 TASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTA 302 (372)
Q Consensus 240 TASn~~ESSya~yc~~~~~~~~~~~~tcLgD~fS~~wme~~~~~~l~~eTl~~qf~~Vk~~t~ 302 (372)
++|. .+|... .+.|...+.+...... ..+|.+.+...|....
T Consensus 310 g~s~---~~~~~~----------------~~~~~~~~~~~l~~~~--~~~lG~a~~~a~~~~~ 351 (378)
T PF01364_consen 310 GSSR---VSYASP----------------NDRLNRGFYEALFNSN--MDTLGEALRQAKNYYL 351 (378)
T ss_dssp EESS-----SSHH----------------HHHHHHHHTT-STT------BHHHHHHHHHHHHH
T ss_pred ecce---eEecch----------------HHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHH
Confidence 5544 444332 3455555555433221 2288898888887554
No 15
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=57.53 E-value=10 Score=37.86 Aligned_cols=102 Identities=23% Similarity=0.418 Sum_probs=65.4
Q ss_pred CCCeEeeCCCCC--------cccCCccccCCCCCC----CHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCC
Q 017398 113 RPGVIINHPHGD--------DVYKGVPKDYTGEDV----TVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180 (372)
Q Consensus 113 ~pG~i~n~p~g~--------dvY~gv~iDY~g~~V----t~~nfl~vL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg 180 (372)
.||+|.+ -||. ++|+-..++-.|.-+ -|+.+...|.-- .|+ | +-+|||-|
T Consensus 103 ~PGrVLH-iDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--------------~PD--I-lViTGHD~ 164 (283)
T TIGR02855 103 MPGRVLH-IDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEV--------------RPD--I-LVITGHDA 164 (283)
T ss_pred CCCcEEe-ecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHh--------------CCC--E-EEEeCchh
Confidence 4999877 4452 466644444444433 345555555511 122 3 34789965
Q ss_pred CCccc----CCC-CCCCCHHHHHHHHHHHHHcC-CCceEEEEeecccccccccccCCCCCcE
Q 017398 181 PGVLG----MPT-SRYIYADELIDVLKKKHASG-NYKSLVFYLEACESGSIFEGLLPEGLNI 236 (372)
Q Consensus 181 ~g~l~----fpd-~~~L~a~dL~~~L~~M~~~~-~Ykklvf~vEAC~SGSmfe~llp~~~NV 236 (372)
+++ +.| ..|-.+..+.++++...+.. .+-+|||+.-|||| -||.++..+.|-
T Consensus 165 --~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGACQS--~yEall~AGANF 222 (283)
T TIGR02855 165 --YSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGACQS--HFESLIRAGANF 222 (283)
T ss_pred --hhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcchhHH--HHHHHHHcCccc
Confidence 443 223 34778999999999986644 67799999999997 688877666553
No 16
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=55.34 E-value=12 Score=38.38 Aligned_cols=43 Identities=28% Similarity=0.494 Sum_probs=27.7
Q ss_pred CCeEEEEeecCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCCceEEEEeeccccccccc
Q 017398 168 NDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (372)
Q Consensus 168 ~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~Ykklvf~vEAC~SGSmfe 227 (372)
+.++|| |.||||=. .|+...++.+ + -+.-+.++=+|-||.+-.
T Consensus 308 ~~dlf~-Y~GHG~G~-------qy~~~~~i~~----~-----~~~~~~lL~GCsS~~l~~ 350 (383)
T PF03568_consen 308 SSDLFL-YCGHGSGE-------QYISGSTIQR----L-----DCCAVSLLMGCSSGRLKE 350 (383)
T ss_pred hCCeEE-EecCCcHH-------HhCCHhhhcc----c-----cccCceEEecCCcccccc
Confidence 456888 56999822 2455544432 2 234577888999998765
No 17
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=51.95 E-value=13 Score=37.26 Aligned_cols=102 Identities=29% Similarity=0.546 Sum_probs=64.1
Q ss_pred CCCeEeeCCCCC--------cccCCccccCCCCCCC----HHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCC
Q 017398 113 RPGVIINHPHGD--------DVYKGVPKDYTGEDVT----VENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180 (372)
Q Consensus 113 ~pG~i~n~p~g~--------dvY~gv~iDY~g~~Vt----~~nfl~vL~G~~~~~t~~s~kvl~S~~~D~VFIY~tgHGg 180 (372)
.||+|.+ -||. ++|+-..|+=.|..+. |+.+...|.-- .|+ | +-+|||=|
T Consensus 104 ~PGkVLH-lDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--------------~PD--I-lViTGHD~ 165 (287)
T PF05582_consen 104 RPGKVLH-LDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEY--------------RPD--I-LVITGHDG 165 (287)
T ss_pred CCCeEEE-ecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHc--------------CCC--E-EEEeCchh
Confidence 7999877 4442 4666544555554444 34444444411 122 3 34799966
Q ss_pred CCccc----CCC-CCCCCHHHHHHHHHHHHH-cCCCceEEEEeecccccccccccCCCCCcE
Q 017398 181 PGVLG----MPT-SRYIYADELIDVLKKKHA-SGNYKSLVFYLEACESGSIFEGLLPEGLNI 236 (372)
Q Consensus 181 ~g~l~----fpd-~~~L~a~dL~~~L~~M~~-~~~Ykklvf~vEAC~SGSmfe~llp~~~NV 236 (372)
+++ +.+ ..|=.+..+.++.+...+ ...+-+||++.-|||| -||.+|..+.|-
T Consensus 166 --~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGACQS--~fEall~AGANF 223 (287)
T PF05582_consen 166 --YLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGACQS--HFEALLEAGANF 223 (287)
T ss_pred --hhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcchhHH--HHHHHHHcCccc
Confidence 333 222 236678899999998755 3356699999999997 788887766663
No 18
>PF11181 YflT: Heat induced stress protein YflT
Probab=47.71 E-value=25 Score=29.23 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=26.1
Q ss_pred hhhhHHHHHHHHHHhCCCCCCCEEEEeccc
Q 017398 75 RHQADICHAYQLLRKGGLKDENIIVFMYDD 104 (372)
Q Consensus 75 RHqADv~~~Yq~Lk~~Gi~denIIlmmyDD 104 (372)
.=+..+.++-+-|++.|+..++|.|+..|+
T Consensus 7 ~~~~E~~~~I~~L~~~Gy~~ddI~Vva~d~ 36 (103)
T PF11181_consen 7 DNEEEALSAIEELKAQGYSEDDIYVVAKDK 36 (103)
T ss_pred CCHHHHHHHHHHHHHcCCCcccEEEEEcCc
Confidence 347789999999999999999999998653
No 19
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=42.61 E-value=24 Score=34.44 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=27.0
Q ss_pred CeEEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEE
Q 017398 59 TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (372)
Q Consensus 59 ~~wAVLVagS~gw~NYRHqADv~~~Yq~Lk~~Gi~denIIl 99 (372)
+.=.+||+|-++=..| ..+-.|.+.|.+.|||++.|++
T Consensus 81 k~~~ilvSGg~~~~~~---~Ea~~M~~yLi~~GVp~e~Ii~ 118 (239)
T PRK10834 81 KVNYLLLSGDNALQSY---NEPMTMRKDLIAAGVDPSDIVL 118 (239)
T ss_pred CCCEEEEeCCCCCCCC---CHHHHHHHHHHHcCCCHHHEEe
Confidence 3334888887642222 3555689999999999999987
No 20
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=36.34 E-value=36 Score=29.34 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEE
Q 017398 63 VLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (372)
Q Consensus 63 VLVagS~gw~NYRHqADv~~~Yq~Lk~~Gi~denIIl 99 (372)
||++|..+... ....+-.+-++|.+.|+|+++|++
T Consensus 41 il~SGg~~~~~--~~~ea~~~~~~l~~~gvp~~~I~~ 75 (155)
T PF02698_consen 41 ILFSGGYGHGD--GRSEAEAMRDYLIELGVPEERIIL 75 (155)
T ss_dssp EEEE--SSTTH--TS-HHHHHHHHHHHT---GGGEEE
T ss_pred EEECCCCCCCC--CCCHHHHHHHHHHhcccchheeEc
Confidence 77787666554 334555666778888999999988
No 21
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=34.99 E-value=33 Score=29.44 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=27.3
Q ss_pred eEEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEE
Q 017398 60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (372)
Q Consensus 60 ~wAVLVagS~gw~NYRHqADv~~~Yq~Lk~~Gi~denIIl 99 (372)
.--||++|..+....+. .+-.+.+.|.+.|+|++.|++
T Consensus 35 ~~~ii~sGg~~~~~~~~--ea~~m~~~l~~~gv~~~~I~~ 72 (150)
T cd06259 35 APKLIVSGGQGPGEGYS--EAEAMARYLIELGVPAEAILL 72 (150)
T ss_pred CCEEEEcCCCCCCCCCC--HHHHHHHHHHHcCCCHHHeee
Confidence 44577777776553333 455566889999999998887
No 22
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=33.41 E-value=23 Score=32.25 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=27.3
Q ss_pred CeEEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEE
Q 017398 59 TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVF 100 (372)
Q Consensus 59 ~~wAVLVagS~gw~NYRHqADv~~~Yq~Lk~~Gi~denIIlm 100 (372)
..-.|.|||+.++-+ -.+.+.|++.|+|++||.+|
T Consensus 200 ~~~~~~icGp~~~~~-------~~~~~~l~~~G~~~~~i~~~ 234 (234)
T cd06183 200 EDTLVLVCGPPPMIE-------GAVKGLLKELGYKKDNVFKF 234 (234)
T ss_pred CCeEEEEECCHHHHH-------HHHHHHHHHcCCCHHHEEeC
Confidence 345789999977642 16777889999999999875
No 23
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=30.36 E-value=48 Score=32.82 Aligned_cols=42 Identities=36% Similarity=0.560 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHh-CCCCCCCEEEEecc-------ccccCCCCCCCCeEeeCC
Q 017398 77 QADICHAYQLLRK-GGLKDENIIVFMYD-------DIAFNEENPRPGVIINHP 121 (372)
Q Consensus 77 qADv~~~Yq~Lk~-~Gi~denIIlmmyD-------DiA~n~~Np~pG~i~n~p 121 (372)
.+|+-++|+.||+ .| ++|+|||+-.- |.|+ |+|..|.|.+.|
T Consensus 112 y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Las--r~~~~alVL~SP 161 (258)
T KOG1552|consen 112 YADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLAS--RYPLAAVVLHSP 161 (258)
T ss_pred hhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhh--cCCcceEEEecc
Confidence 4899999999976 77 99999998532 2333 555667766665
No 24
>PRK10494 hypothetical protein; Provisional
Probab=30.35 E-value=45 Score=32.41 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=29.4
Q ss_pred CeEEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEE
Q 017398 59 TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (372)
Q Consensus 59 ~~wAVLVagS~gw~NYRHqADv~~~Yq~Lk~~Gi~denIIl 99 (372)
..--||++|..+..+- .+.+-.+-+.|++.|+|++.|++
T Consensus 120 ~~~~ii~SGg~~~~~~--~sEA~~~~~~l~~lGVp~~~Ii~ 158 (259)
T PRK10494 120 PGAKLIFTGGAAKTNT--VSTAEVGARVAQSLGVPREDIIT 158 (259)
T ss_pred CCCEEEEECCCCCCCC--CCHHHHHHHHHHHcCCCHHHeee
Confidence 3456888887775542 35666778889999999999976
No 25
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=27.99 E-value=1.3e+02 Score=29.48 Aligned_cols=64 Identities=20% Similarity=0.100 Sum_probs=41.3
Q ss_pred cCccccccccCCCCCCccCCCCCCCCCeEEEEEeccCCCCCchhhhHHH--HHHHHHHhCCCCCCCEEEEecccc
Q 017398 33 LPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADIC--HAYQLLRKGGLKDENIIVFMYDDI 105 (372)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wAVLVagS~gw~NYRHqADv~--~~Yq~Lk~~Gi~denIIlmmyDDi 105 (372)
=|.++..||.|.- ..-..+..|.=+++=|+| |+-++.-+- -.-+.--..|+|.+|++++-+.+.
T Consensus 46 hpdDE~mFFsPtI-------~~L~~~~~~v~iLClSnG--N~dg~G~iR~kEL~ra~~~lgi~~s~v~~l~~~~f 111 (247)
T KOG3332|consen 46 HPDDESMFFSPTI-------LYLTSGACNVHILCLSNG--NADGLGKIREKELHRACAVLGIPLSNVVVLDTPFF 111 (247)
T ss_pred ccCccccchhhHH-------HHHhcCCccEEEEEecCC--CccccchHHHHHHHHHHHHHCCchhheEEecCCcC
Confidence 3555667775411 011234668888899999 888887664 223333448999999999976654
No 26
>COG5155 ESP1 Separase, a protease involved in sister chromatid separation [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=26.52 E-value=37 Score=39.69 Aligned_cols=43 Identities=23% Similarity=0.573 Sum_probs=29.0
Q ss_pred CCeEEEEeecCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCCceEEEEeeccccccccc
Q 017398 168 NDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (372)
Q Consensus 168 ~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~~~Ykklvf~vEAC~SGSmfe 227 (372)
+.++|+|| ||||- ..|+...|+++. ++-+ +.++=+|.|+.|..
T Consensus 1489 g~d~flYf-GHGgG-------eQY~~s~ei~~~-------~~~a--~~~L~GCSS~al~~ 1531 (1622)
T COG5155 1489 GCDVFLYF-GHGGG-------EQYLKSSEIKKC-------GEGA--TMLLFGCSSVALLC 1531 (1622)
T ss_pred CCCEEEEE-ecCCc-------ceeeeHhhhhhh-------cccc--eeEEecCcHHHHHH
Confidence 45688887 89982 236778777643 2222 44677999999865
No 27
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=25.62 E-value=50 Score=30.89 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEe
Q 017398 78 ADICHAYQLLRKGGLKDENIIVFM 101 (372)
Q Consensus 78 ADv~~~Yq~Lk~~Gi~denIIlmm 101 (372)
..+|.+.+.|+++|+++++|+++.
T Consensus 135 ~s~~~ai~~L~~~G~~~~~I~~v~ 158 (207)
T PF14681_consen 135 GSAIAAIEILKEHGVPEENIIIVS 158 (207)
T ss_dssp HHHHHHHHHHHHTTG-GGEEEEEE
T ss_pred hhHHHHHHHHHHcCCCcceEEEEE
Confidence 379999999999999999999986
No 28
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=25.44 E-value=68 Score=25.36 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=16.1
Q ss_pred EEEEeccCCCCCchhhhHHHH
Q 017398 62 AVLLAGSNGFWNYRHQADICH 82 (372)
Q Consensus 62 AVLVagS~gw~NYRHqADv~~ 82 (372)
-|||+||+.|.++..-.+++.
T Consensus 5 rVli~GgR~~~D~~~i~~~Ld 25 (71)
T PF10686_consen 5 RVLITGGRDWTDHELIWAALD 25 (71)
T ss_pred EEEEEECCccccHHHHHHHHH
Confidence 489999999998776555544
No 29
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=21.02 E-value=1e+02 Score=29.62 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=26.1
Q ss_pred EEEEeecCCC---------CCcccCCCCCCCCHHHHHHHHHHHHHc
Q 017398 171 IFIFYSDHGG---------PGVLGMPTSRYIYADELIDVLKKKHAS 207 (372)
Q Consensus 171 VFIY~tgHGg---------~g~l~fpd~~~L~a~dL~~~L~~M~~~ 207 (372)
=-||+||||- .|..-|=..+ +..++|.++++...+.
T Consensus 78 PVIfiTGhgDIpmaV~AmK~GAvDFLeKP-~~~q~Lldav~~Al~~ 122 (202)
T COG4566 78 PVIFLTGHGDIPMAVQAMKAGAVDFLEKP-FSEQDLLDAVERALAR 122 (202)
T ss_pred CEEEEeCCCChHHHHHHHHcchhhHHhCC-CchHHHHHHHHHHHHH
Confidence 4588999997 3545554444 8889999999987553
No 30
>PRK10649 hypothetical protein; Provisional
Probab=20.80 E-value=53 Score=35.66 Aligned_cols=17 Identities=24% Similarity=0.661 Sum_probs=13.9
Q ss_pred CCCCCeEEEEeecCCCC
Q 017398 165 SGPNDHIFIFYSDHGGP 181 (372)
Q Consensus 165 S~~~D~VFIY~tgHGg~ 181 (372)
...++.++||++|||..
T Consensus 449 ~~~~nt~iiy~SDHGe~ 465 (577)
T PRK10649 449 ATDPNGFLVYFSDHGEE 465 (577)
T ss_pred cCCCCeEEEEECCCCcc
Confidence 34578999999999975
No 31
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=20.30 E-value=1.1e+02 Score=29.47 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHhC----CCCCCCEEEEe
Q 017398 76 HQADICHAYQLLRKG----GLKDENIIVFM 101 (372)
Q Consensus 76 HqADv~~~Yq~Lk~~----Gi~denIIlmm 101 (372)
+-.|+..+|+.|+++ |++.++|+++=
T Consensus 129 ~~~d~~~a~~~l~~~~~~~g~dp~~i~v~G 158 (312)
T COG0657 129 ALEDAYAAYRWLRANAAELGIDPSRIAVAG 158 (312)
T ss_pred hHHHHHHHHHHHHhhhHhhCCCccceEEEe
Confidence 347899999999876 79999999973
Done!