BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017399
         (372 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DR0|A Chain A, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
           Nrdf
 pdb|4DR0|B Chain B, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
           Nrdf
          Length = 350

 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 234 YMYSFEFPVDYSSWRASVHIYGPGTLYRHSRQTNFILSDAGWHCSFCFRHLHEIVFKMTA 293
           Y+ SF F   YS +   ++ YG G L +     N IL D   H  +      EI  K T 
Sbjct: 183 YLESFLF---YSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTE 239

Query: 294 YSHAD-RVKRLEFLNPSRIQKLICRGDDLFDMLPEEYTFKELIK 336
              A+ R   ++ LN     +L    +DL+D +   +  K+ I+
Sbjct: 240 EKKAELREFAIDLLNQLYENELEYT-EDLYDQVGLSHDVKKFIR 282


>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
 pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
          Length = 178

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 74  AENVSIEHLCKLHGWSIRSQPRRLFDGIIFNNEVDLLEIR 113
            +  S EH+ + H   +R + R  F  I+  N+VDL+ +R
Sbjct: 95  TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 134


>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
           (Type 1)
 pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
           (Type 2)
          Length = 183

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 74  AENVSIEHLCKLHGWSIRSQPRRLFDGIIFNNEVDLLEIR 113
            +  S EH+ + H   +R + R  F  I+  N+VDL+ +R
Sbjct: 100 TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 139


>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
 pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
          Length = 183

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 74  AENVSIEHLCKLHGWSIRSQPRRLFDGIIFNNEVDLLEIR 113
            +  S EH+ + H   +R + R  F  I+  N+VDL+ +R
Sbjct: 100 TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 139


>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
 pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
 pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
          Length = 183

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 74  AENVSIEHLCKLHGWSIRSQPRRLFDGIIFNNEVDLLEIR 113
            +  S EH+ + H   +R + R  F  I+  N+VDL+ +R
Sbjct: 100 TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 139


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.142    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,856,462
Number of Sequences: 62578
Number of extensions: 514841
Number of successful extensions: 1237
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1232
Number of HSP's gapped (non-prelim): 9
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)