BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017399
(372 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09327|MGAT3_HUMAN Beta-1,4-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase OS=Homo sapiens
GN=MGAT3 PE=2 SV=3
Length = 533
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 132/313 (42%), Gaps = 54/313 (17%)
Query: 91 RSQPRRLFDGIIFNNEVDLLEIRWRELNPYVTKFVILESNTTFTGIPKPLFFS--LNRAR 148
R PRR+ + I N+E DLL++R+ EL V FV+ ESN T G P+PL F L
Sbjct: 202 REVPRRVINAINVNHEFDLLDVRFHELGDVVDAFVVCESNFTAYGEPRPLKFREMLTNGT 261
Query: 149 YAFAEGKIV-----HGVYSGRSSSVGLDKDPFVRESEQRKAINGLLCYAGISNDDLLIMS 203
+ + K++ H GR G D ++R + ++ L + DD+ I+
Sbjct: 262 FEYIRHKVLYVFLDHFPPGGRQD--GWIADDYLRTFLTQDGVSRL---RNLRPDDVFIID 316
Query: 204 DADEIPSRHTMRLLQWCDGVPPILHLELKNYMYSFEFP-------VDYSSWRASVHIYGP 256
DADEIP+R + L+ DG ++ +Y F + V + +YG
Sbjct: 317 DADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTVDMLQAVYGL 376
Query: 257 GTLYRHSRQ-------------TNFILSD---------AGWHCSFCFRHLHEIVFKMTAY 294
+ RQ T IL AGWHCS+CF I FK+ +
Sbjct: 377 DGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCSWCFTP-EGIYFKLVSA 435
Query: 295 SHADRVKRLEFLNPSRIQKL--ICRGDDLFDMLPEEYTFKELIKKMGSIPRSASAVHLPA 352
+ D + ++ + + + + R FD +EY + + M + P
Sbjct: 436 QNGDFPRWGDYEDKRDLNYIRGLIRTGGWFDGTQQEYPPADPSEHM----------YAPK 485
Query: 353 YLIENADRFKFLL 365
YL++N DRF +LL
Sbjct: 486 YLLKNYDRFHYLL 498
>sp|Q02527|MGAT3_RAT Beta-1,4-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase OS=Rattus
norvegicus GN=Mgat3 PE=1 SV=2
Length = 538
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 133/313 (42%), Gaps = 54/313 (17%)
Query: 91 RSQPRRLFDGIIFNNEVDLLEIRWRELNPYVTKFVILESNTTFTGIPKPLFFS--LNRAR 148
R PRR+ + I N+E DLL++R+ EL V FV+ ESN T G P+PL F L
Sbjct: 206 REVPRRVINAININHEFDLLDVRFHELGDVVDAFVVCESNFTAYGEPRPLKFREMLTNGT 265
Query: 149 YAFAEGKIV-----HGVYSGRSSSVGLDKDPFVRESEQRKAINGLLCYAGISNDDLLIMS 203
+ + K++ H GR G D ++R + ++ L + DD+ I+
Sbjct: 266 FEYIRHKVLYVFLDHFPPGGRQD--GWIADDYLRTFLTQDGVSRL---RNLRPDDVFIID 320
Query: 204 DADEIPSRHTMRLLQWCDGVPPILHLELKNYMYSFEFP-------VDYSSWRASVHIYGP 256
DADEIP+R + L+ DG ++ +Y F + V + +YG
Sbjct: 321 DADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTIDMLQAVYGL 380
Query: 257 GTLYRHSRQ-------------TNFILSD---------AGWHCSFCFRHLHEIVFKMTAY 294
+ RQ T IL AGWHCS+CF I FK+ +
Sbjct: 381 DGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCSWCFTP-EGIYFKLVSA 439
Query: 295 SHADRVKRLEFLNPSRIQ--KLICRGDDLFDMLPEEYTFKELIKKMGSIPRSASAVHLPA 352
+ D + ++ + + + + R FD +EY + + M + P
Sbjct: 440 QNGDFPRWGDYEDKRDLNYIRSLIRTGGWFDGTQQEYPPADPSEHM----------YAPK 489
Query: 353 YLIENADRFKFLL 365
YL++N D+F++LL
Sbjct: 490 YLLKNYDQFRYLL 502
>sp|Q10470|MGAT3_MOUSE Beta-1,4-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase OS=Mus musculus
GN=Mgat3 PE=1 SV=2
Length = 538
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 133/313 (42%), Gaps = 54/313 (17%)
Query: 91 RSQPRRLFDGIIFNNEVDLLEIRWRELNPYVTKFVILESNTTFTGIPKPLFFS--LNRAR 148
R PRR+ + I N+E DLL++R+ EL V FV+ +SN T G P+PL F L
Sbjct: 206 REVPRRVINAININHEFDLLDVRFHELGDVVDAFVVCDSNFTAYGEPRPLKFREMLTNGT 265
Query: 149 YAFAEGKIV-----HGVYSGRSSSVGLDKDPFVRESEQRKAINGLLCYAGISNDDLLIMS 203
+ + K++ H GR G D ++R + ++ L + DD+ I+
Sbjct: 266 FEYIRHKVLYVFLDHFPPGGRQD--GWIADDYLRTFLTQDGVSRL---RNLRPDDVFIID 320
Query: 204 DADEIPSRHTMRLLQWCDGVPPILHLELKNYMYSFEFP-------VDYSSWRASVHIYGP 256
DADEIP+R + L+ DG ++ +Y F + V + +YG
Sbjct: 321 DADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTMDMLQAVYGL 380
Query: 257 GTLYRHSRQ-------------TNFILSD---------AGWHCSFCFRHLHEIVFKMTAY 294
+ RQ T IL AGWHCS+CF I FK+ +
Sbjct: 381 DGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCSWCFTP-EGIYFKLVSA 439
Query: 295 SHADRVKRLEFLNPSRIQ--KLICRGDDLFDMLPEEYTFKELIKKMGSIPRSASAVHLPA 352
+ D + ++ + + + + R FD +EY + + M + P
Sbjct: 440 QNGDFPRWGDYEDKRDLNYIRSLIRTGGWFDGTQQEYPPADPSEHM----------YAPK 489
Query: 353 YLIENADRFKFLL 365
YL++N D+F++LL
Sbjct: 490 YLLKNYDQFRYLL 502
>sp|P57933|SYA_PASMU Alanine--tRNA ligase OS=Pasteurella multocida (strain Pm70) GN=alaS
PE=3 SV=1
Length = 874
Score = 35.4 bits (80), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 98 FDGIIFNNEVDLLEIRWRELNPYVTKF---VILESNTTFTGIPKPLFFSLNRARYAFAEG 154
D + F+ E++ +R + + + + + +E TTF G SL + FA+G
Sbjct: 419 IDEVGFDREMEAQRLRAQSASQFGMDYNNVIRVEGCTTFEGYTASE--SLAKVTALFADG 476
Query: 155 KIVHGVYSGRSSSVGLDKDPFVRESEQRKAINGLLCYAGIS 195
K V + +G+S+ V L+ PF ES + +G L G S
Sbjct: 477 KPVERIEAGQSAVVILENTPFYAESGGQIGDSGYLNGQGFS 517
>sp|A6VKD6|SYA_ACTSZ Alanine--tRNA ligase OS=Actinobacillus succinogenes (strain ATCC
55618 / 130Z) GN=alaS PE=3 SV=1
Length = 874
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 103 FNNEVDLLEIRWRELNPY---VTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHG 159
F+ E++ +R + + + T + ++ T F G SL + F +GK V
Sbjct: 424 FDKEMEAQRLRAQSASNFGMDYTSIIRVDGETKFEGYTN--VESLAKVTALFRDGKAVES 481
Query: 160 VYSGRSSSVGLDKDPFVRESEQRKAINGLLCYAGISND 197
V +G+S+ V L+ PF E + +G+L G+ D
Sbjct: 482 VSAGQSAVVILENTPFYAEMGGQIGDSGMLTANGLHFD 519
>sp|Q3AFL7|RL25_CARHZ 50S ribosomal protein L25 OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=rplY PE=3 SV=1
Length = 197
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 34/61 (55%)
Query: 306 LNPSRIQKLICRGDDLFDMLPEEYTFKELIKKMGSIPRSASAVHLPAYLIENADRFKFLL 365
+N ++ L+ RG LF++ E T + L+K++ P + +H+ ++E+ + + L+
Sbjct: 42 VNARELESLVERGLKLFELSVEGKTQRVLVKELQHHPVTGKLIHVDFQVVESGRKIRQLV 101
Query: 366 P 366
P
Sbjct: 102 P 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,420,549
Number of Sequences: 539616
Number of extensions: 6521404
Number of successful extensions: 16718
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16705
Number of HSP's gapped (non-prelim): 9
length of query: 372
length of database: 191,569,459
effective HSP length: 119
effective length of query: 253
effective length of database: 127,355,155
effective search space: 32220854215
effective search space used: 32220854215
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)