Query 017399
Match_columns 372
No_of_seqs 171 out of 208
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:14:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04724 Glyco_transf_17: Glyc 100.0 4E-115 8E-120 865.5 29.0 353 13-372 2-355 (356)
2 cd02511 Beta4Glucosyltransfera 94.4 2.1 4.5E-05 39.6 15.2 89 100-218 5-93 (229)
3 PF13704 Glyco_tranf_2_4: Glyc 86.6 4.5 9.8E-05 32.2 7.9 84 105-211 2-86 (97)
4 PF12661 hEGF: Human growth fa 80.7 0.72 1.6E-05 25.0 0.6 12 52-63 1-12 (13)
5 TIGR01556 rhamnosyltran L-rham 79.3 12 0.00025 35.5 8.8 94 102-218 2-95 (281)
6 cd02526 GT2_RfbF_like RfbF is 78.6 31 0.00068 31.1 11.1 93 101-217 4-96 (237)
7 cd04186 GT_2_like_c Subfamily 68.3 62 0.0013 26.8 9.7 91 101-218 3-96 (166)
8 cd04187 DPM1_like_bac Bacteria 63.9 77 0.0017 27.4 9.8 23 196-218 80-102 (181)
9 cd00761 Glyco_tranf_GTA_type G 63.4 73 0.0016 25.2 9.5 93 101-217 3-98 (156)
10 TIGR03595 Obg_CgtA_exten Obg f 59.6 6.9 0.00015 30.5 2.0 21 185-205 45-65 (69)
11 cd06442 DPM1_like DPM1_like re 57.3 1.4E+02 0.003 26.5 10.5 93 101-217 3-99 (224)
12 cd02522 GT_2_like_a GT_2_like_ 56.2 1E+02 0.0022 27.2 9.4 22 197-218 73-94 (221)
13 cd06436 GlcNAc-1-P_transferase 55.8 1.5E+02 0.0032 26.3 13.5 116 101-232 3-125 (191)
14 cd06435 CESA_NdvC_like NdvC_li 55.2 1.5E+02 0.0033 26.6 10.5 23 196-218 84-106 (236)
15 cd06437 CESA_CaSu_A2 Cellulose 52.0 1.8E+02 0.0039 26.2 12.6 104 101-225 7-116 (232)
16 PF00535 Glycos_transf_2: Glyc 51.7 57 0.0012 26.7 6.6 93 101-217 4-99 (169)
17 cd06439 CESA_like_1 CESA_like_ 51.6 1.9E+02 0.0041 26.3 11.9 98 94-217 28-130 (251)
18 cd06438 EpsO_like EpsO protein 50.9 1.7E+02 0.0036 25.5 10.2 24 195-218 80-103 (183)
19 PF09269 DUF1967: Domain of un 49.6 12 0.00025 29.2 1.8 21 185-205 45-65 (69)
20 PF13641 Glyco_tranf_2_3: Glyc 46.5 2.1E+02 0.0046 25.4 10.1 35 183-220 76-111 (228)
21 TIGR03469 HonB hopene-associat 44.9 2.5E+02 0.0055 28.3 11.1 105 96-217 41-154 (384)
22 PRK11204 N-glycosyltransferase 44.9 2.4E+02 0.0053 28.3 11.0 101 96-220 55-159 (420)
23 PF10111 Glyco_tranf_2_2: Glyc 44.4 1.1E+02 0.0025 29.3 8.2 24 196-219 88-111 (281)
24 PRK14583 hmsR N-glycosyltransf 44.3 1.7E+02 0.0037 30.1 9.9 23 195-217 154-176 (444)
25 cd04179 DPM_DPG-synthase_like 42.7 1.4E+02 0.003 25.5 7.8 24 196-219 79-102 (185)
26 COG1215 Glycosyltransferases, 41.5 34 0.00074 34.2 4.2 37 182-221 126-163 (439)
27 cd02520 Glucosylceramide_synth 41.1 1.2E+02 0.0027 26.7 7.4 33 183-218 76-108 (196)
28 cd06434 GT2_HAS Hyaluronan syn 39.9 42 0.00091 30.2 4.2 37 182-221 66-103 (235)
29 cd04185 GT_2_like_b Subfamily 39.3 2.6E+02 0.0057 24.4 11.2 24 195-218 78-101 (202)
30 PRK05454 glucosyltransferase M 36.4 1.7E+02 0.0037 32.6 8.9 33 184-217 209-241 (691)
31 cd06423 CESA_like CESA_like is 36.1 2.3E+02 0.005 22.8 12.8 31 196-226 78-109 (180)
32 cd04184 GT2_RfbC_Mx_like Myxoc 35.1 3E+02 0.0065 23.8 10.4 93 103-218 10-105 (202)
33 cd04190 Chitin_synth_C C-termi 34.7 1.3E+02 0.0028 28.0 6.7 32 195-226 72-104 (244)
34 PRK10714 undecaprenyl phosphat 33.7 3.7E+02 0.008 26.6 10.1 97 97-217 8-111 (325)
35 cd02510 pp-GalNAc-T pp-GalNAc- 32.2 3.7E+02 0.008 25.6 9.6 94 102-217 5-104 (299)
36 TIGR03472 HpnI hopanoid biosyn 30.7 3.9E+02 0.0084 26.8 9.8 33 183-218 116-148 (373)
37 TIGR03111 glyc2_xrt_Gpos1 puta 29.8 4.5E+02 0.0097 27.1 10.3 31 184-217 122-152 (439)
38 PRK14716 bacteriophage N4 adso 27.8 5.7E+02 0.012 27.4 10.9 22 197-218 159-180 (504)
39 cd06421 CESA_CelA_like CESA_Ce 27.5 80 0.0017 28.2 3.9 23 196-218 84-106 (234)
40 cd04188 DPG_synthase DPG_synth 24.2 5E+02 0.011 22.9 10.6 32 184-218 73-104 (211)
41 PRK13915 putative glucosyl-3-p 24.1 6.9E+02 0.015 24.5 11.6 31 184-217 106-137 (306)
42 PF13506 Glyco_transf_21: Glyc 22.9 91 0.002 28.1 3.4 32 185-218 22-53 (175)
43 smart00051 DSL delta serrate l 22.7 48 0.001 25.4 1.3 14 50-63 49-62 (63)
44 cd02525 Succinoglycan_BP_ExoA 22.4 5.5E+02 0.012 22.8 10.8 23 196-218 81-103 (249)
45 cd04194 GT8_A4GalT_like A4GalT 22.4 86 0.0019 29.2 3.2 58 150-209 53-116 (248)
46 cd00218 GlcAT-I Beta1,3-glucur 21.9 2.3E+02 0.0051 27.3 6.0 43 177-219 75-118 (223)
47 cd04192 GT_2_like_e Subfamily 20.5 1.7E+02 0.0036 25.8 4.5 23 196-218 82-104 (229)
No 1
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=100.00 E-value=3.9e-115 Score=865.53 Aligned_cols=353 Identities=54% Similarity=0.959 Sum_probs=336.6
Q ss_pred CCCCccccccCCchHHHHHHHHHHhhhheeeEeeecceeeeecCCCCCCCCCCCCCCCeEeccCcChHhHHhhcCCcccC
Q 017399 13 GKRPLRLTSRGSVPKLLFIVLLMIGPICMISLFTYREKISYFFRPLWDKPPPPFQYLPHYYAENVSIEHLCKLHGWSIRS 92 (372)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~W~~~~~p~~~~p~~~~~~~~~~~~c~~hg~~~r~ 92 (372)
+|||++|+++++ ++++++++++|+++++.++++++|+|||+||||++|||+||||||++.+|.++|++|||++|+
T Consensus 2 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~rp~w~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~R~ 76 (356)
T PF04724_consen 2 SMSRRRCILRGL-----FLFLFVLLPLCVIGVYQHGQSISCFCRPGWHGPPDPFCGIPHYYWESVSMSNLCQLHGWKPRK 76 (356)
T ss_pred cchhHHHHHHHH-----HHHHHHHHHHHhheeeecCceeEEeccCccCCCCCCCCCCCcceeecchhhhcccccCCCcCC
Confidence 578889988885 344899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeecChHHHHHHHHHHhCccccEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCC
Q 017399 93 QPRRLFDGIIFNNEVDLLEIRWRELNPYVTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDK 172 (372)
Q Consensus 93 ~pRkI~D~f~f~~ElDlLEIRL~eL~dvVD~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~ 172 (372)
.||||||||+||+|+|||||||+||+|+||+|||||||.||||.||||+|.+|++||+++++||+|+++++.+.. +..
T Consensus 77 ~pRrV~D~~~f~~ElDlLeiRl~eL~~vVD~FVIvEs~~Tf~G~~KpL~f~~~~~~f~~~~~KIiy~~l~~~~~~--g~~ 154 (356)
T PF04724_consen 77 TPRRVYDCFLFNNELDLLEIRLNELYDVVDYFVIVESNRTFTGKPKPLYFAENKERFAFFHDKIIYVTLDDPPEK--GRK 154 (356)
T ss_pred CCCeEEEEEEeCChHHHHHHHHHHhhCcceEEEEEEECCCcCCCCCCccHHHHHHHHHhhhcceEEEEecCcCCC--CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976432 335
Q ss_pred ChhhhhHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHhhhcCCCCCceEEEEeeeeeeecccccCCcceeeEE
Q 017399 173 DPFVRESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLLQWCDGVPPILHLELKNYMYSFEFPVDYSSWRASVH 252 (372)
Q Consensus 173 ~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~Lk~cdg~p~~l~l~lr~~~YsF~~~~~~~~W~~s~~ 252 (372)
++|++|++|||+|.++++.+|+++|||||+||+||||+|++|++||+|||+|++++|+|++|+|||+|++++++|+++++
T Consensus 155 ~~w~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~~l~~Lr~cd~~p~~l~l~lr~y~YsF~~~~~~~~~r~~~~ 234 (356)
T PF04724_consen 155 DPWDRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPETLKFLRWCDGFPEPLHLRLRFYYYSFQFQHDGKSWRASVH 234 (356)
T ss_pred chhHHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHHHHHHHHhcCCCCCeeEEEeeceEEEEEEecCCcchhhhhh
Confidence 89999999999998888888999999999999999999999999999999999999999999999999999999998877
Q ss_pred EeC-CCccccccccCCCccCCceeecccCccchHHHHHHHHhcccccccCccccCCHHHHHHHHHcCCcccCCCccchhH
Q 017399 253 IYG-PGTLYRHSRQTNFILSDAGWHCSFCFRHLHEIVFKMTAYSHADRVKRLEFLNPSRIQKLICRGDDLFDMLPEEYTF 331 (372)
Q Consensus 253 ~y~-~~t~~~~~R~~~~~l~~aGWHCS~Cf~~i~~i~~Km~SfsH~d~~~~~~~~d~~~I~~~I~~G~Dlfd~~~e~y~~ 331 (372)
.|. +.+.|++.|+++.++++|||||||||+++++|++||+||||+|++++++++|+++||++||+|+|||||.+|+|+|
T Consensus 235 ~~~~~~~~~~~~r~~~~il~daGWHCS~Cf~~ie~i~~Km~SfSH~e~~r~~~~~D~~~I~~~I~~G~DlfD~~~~~~~~ 314 (356)
T PF04724_consen 235 TYSQGMRRYRHSRQSDHILADAGWHCSSCFSTIEEIINKMQSFSHQERNRWPEFLDPDYIQDLIRSGKDLFDRKPEEYRF 314 (356)
T ss_pred hhccccchhhhhcccCccccCCceeccCcCCCHHHHHHHHHhhcccccccchhhcCHHHHHHHHhcCccccCCChHhcch
Confidence 765 6778888999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCchHHHhchhccCcccCCCCcCC
Q 017399 332 KELIKKMGSIPRSASAVHLPAYLIENADRFKFLLPGGCLRE 372 (372)
Q Consensus 332 ~e~~~k~~~i~~s~~~~~~P~yll~n~~rf~yLL~~~~~r~ 372 (372)
+|+++||++++++.+++++|+||++|++||+|||||||+||
T Consensus 315 ~~~~~kl~~i~~~~~~~~~P~yll~n~~kf~~Ll~~~~~~~ 355 (356)
T PF04724_consen 315 KDLIKKLGPIPRSYSAYYAPEYLLENADKFKYLLPGNCYRE 355 (356)
T ss_pred hhhhhhcccCCcccccccCCHHHHhCHHHHhhccCCCccCC
Confidence 99999999999999999999999999999999999999996
No 2
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=94.43 E-value=2.1 Score=39.62 Aligned_cols=89 Identities=19% Similarity=0.104 Sum_probs=60.6
Q ss_pred EEeecChHHHHHHHHHHhCccccEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChhhhhH
Q 017399 100 GIIFNNEVDLLEIRWRELNPYVTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPFVRES 179 (372)
Q Consensus 100 ~f~f~~ElDlLEIRL~eL~dvVD~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w~~E~ 179 (372)
+++..||-+.|+-=|+.|.+.+|.+|||.+..|- | .. +--+.+..++++. . |...+
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~~~eiivvD~gStD-~-t~--------~i~~~~~~~v~~~--~------------~~g~~ 60 (229)
T cd02511 5 VIITKNEERNIERCLESVKWAVDEIIVVDSGSTD-R-TV--------EIAKEYGAKVYQR--W------------WDGFG 60 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcccCEEEEEeCCCCc-c-HH--------HHHHHcCCEEEEC--C------------CCChH
Confidence 4556678788888899999999999999988652 1 11 1112344555443 1 12235
Q ss_pred HHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 017399 180 EQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 180 ~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
.+||..... ..+|.|++.|.||++.++.+..+.
T Consensus 61 ~~~n~~~~~------a~~d~vl~lDaD~~~~~~~~~~l~ 93 (229)
T cd02511 61 AQRNFALEL------ATNDWVLSLDADERLTPELADEIL 93 (229)
T ss_pred HHHHHHHHh------CCCCEEEEEeCCcCcCHHHHHHHH
Confidence 677765532 246799999999999999998774
No 3
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=86.57 E-value=4.5 Score=32.21 Aligned_cols=84 Identities=23% Similarity=0.179 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHhCcc-ccEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChhhhhHHHHH
Q 017399 105 NEVDLLEIRWRELNPY-VTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPFVRESEQRK 183 (372)
Q Consensus 105 ~ElDlLEIRL~eL~dv-VD~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w~~E~~qRn 183 (372)
||-++|+-=|.-.... ||.|+|+.-+.|- |. .+. .+.+ +++..+.... +|..+..|+.
T Consensus 2 ne~~~L~~wl~~~~~lG~d~i~i~d~~s~D-~t------~~~---l~~~-~~v~i~~~~~----------~~~~~~~~~~ 60 (97)
T PF13704_consen 2 NEADYLPEWLAHHLALGVDHIYIYDDGSTD-GT------REI---LRAL-PGVGIIRWVD----------PYRDERRQRA 60 (97)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEEECCCCc-cH------HHH---HHhC-CCcEEEEeCC----------CccchHHHHH
Confidence 5666776656666677 9999999765542 21 111 1222 4444443321 2333444444
Q ss_pred HHHHHhHhcCCCCCcEEEeeCCCCcCCH
Q 017399 184 AINGLLCYAGISNDDLLIMSDADEIPSR 211 (372)
Q Consensus 184 ~l~~~l~~~~~~~dDliI~SDvDEIP~~ 211 (372)
....+... ....|.|++.|+||+.-+
T Consensus 61 ~~~~~~~~--~~~~dWvl~~D~DEfl~~ 86 (97)
T PF13704_consen 61 WRNALIER--AFDADWVLFLDADEFLVP 86 (97)
T ss_pred HHHHHHHh--CCCCCEEEEEeeeEEEec
Confidence 33333332 357899999999998543
No 4
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=80.72 E-value=0.72 Score=25.00 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=9.6
Q ss_pred eeecCCCCCCCC
Q 017399 52 SYFFRPLWDKPP 63 (372)
Q Consensus 52 ~~~~~p~W~~~~ 63 (372)
+|.|.|+|.|+.
T Consensus 1 ~C~C~~G~~G~~ 12 (13)
T PF12661_consen 1 TCQCPPGWTGPN 12 (13)
T ss_dssp EEEE-TTEETTT
T ss_pred CccCcCCCcCCC
Confidence 589999999986
No 5
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=79.28 E-value=12 Score=35.52 Aligned_cols=94 Identities=12% Similarity=0.054 Sum_probs=59.1
Q ss_pred eecChHHHHHHHHHHhCccccEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChhhhhHHH
Q 017399 102 IFNNEVDLLEIRWRELNPYVTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPFVRESEQ 181 (372)
Q Consensus 102 ~f~~ElDlLEIRL~eL~dvVD~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w~~E~~q 181 (372)
.||-|++.|+-=++.|...++..|||+.+.|-++..+ ....-.++|.++..+.. .+ . +.-
T Consensus 2 tyn~~~~~l~~~l~sl~~q~~~iiVVDN~S~~~~~~~---------~~~~~~~~i~~i~~~~N-----~G---~---a~a 61 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQVDRIIAVDNSPHSDQPLK---------NARLRGQKIALIHLGDN-----QG---I---AGA 61 (281)
T ss_pred ccCccHHHHHHHHHHHHhcCCEEEEEECcCCCcHhHH---------HHhccCCCeEEEECCCC-----cc---h---HHH
Confidence 5677888888788889888999999997754221111 11112267877775421 01 1 122
Q ss_pred HHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 017399 182 RKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 182 Rn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
+|.-.+... -+..|.|++-|-|.+|.++.+..|-
T Consensus 62 ~N~Gi~~a~---~~~~d~i~~lD~D~~~~~~~l~~l~ 95 (281)
T TIGR01556 62 QNQGLDASF---RRGVQGVLLLDQDSRPGNAFLAAQW 95 (281)
T ss_pred HHHHHHHHH---HCCCCEEEEECCCCCCCHHHHHHHH
Confidence 343332221 1367999999999999999988663
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=78.61 E-value=31 Score=31.07 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=59.1
Q ss_pred EeecChHHHHHHHHHHhCccccEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChhhhhHH
Q 017399 101 IIFNNEVDLLEIRWRELNPYVTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPFVRESE 180 (372)
Q Consensus 101 f~f~~ElDlLEIRL~eL~dvVD~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w~~E~~ 180 (372)
..+|.|++.|+-=|..+...++.+|||..+.+= .... ..++ -..++.++..+.. .+ -+.
T Consensus 4 ~~yn~~~~~l~~~l~sl~~q~~~iivvDn~s~~----~~~~----~~~~--~~~~i~~i~~~~n-----~G------~~~ 62 (237)
T cd02526 4 VTYNPDLSKLKELLAALAEQVDKVVVVDNSSGN----DIEL----RLRL--NSEKIELIHLGEN-----LG------IAK 62 (237)
T ss_pred EEecCCHHHHHHHHHHHhccCCEEEEEeCCCCc----cHHH----Hhhc--cCCcEEEEECCCc-----ee------hHH
Confidence 356667688888888888888899999865421 1111 1111 2456766665321 01 123
Q ss_pred HHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 181 QRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 181 qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
.||...+..+ | ...|.|++.|.|.++.|+.|..+
T Consensus 63 a~N~g~~~a~--~-~~~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 63 ALNIGIKAAL--E-NGADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred hhhHHHHHHH--h-CCCCEEEEECCCCCcCHhHHHHH
Confidence 4555554333 2 36899999999999999999988
No 7
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=68.30 E-value=62 Score=26.77 Aligned_cols=91 Identities=11% Similarity=0.011 Sum_probs=52.2
Q ss_pred EeecChHHHHHHHHHHhCcc---ccEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChhhh
Q 017399 101 IIFNNEVDLLEIRWRELNPY---VTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPFVR 177 (372)
Q Consensus 101 f~f~~ElDlLEIRL~eL~dv---VD~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w~~ 177 (372)
++..||.+.|+--|+.|... .+..||+....+- . ..+... .+..++.++..+.. .+.
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~----~---~~~~~~---~~~~~~~~~~~~~~-----~g~----- 62 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTD----G---SVELLR---ELFPEVRLIRNGEN-----LGF----- 62 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCc----h---HHHHHH---HhCCCeEEEecCCC-----cCh-----
Confidence 45567788888777777654 4567777644321 1 111111 22225555543210 111
Q ss_pred hHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 017399 178 ESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 178 E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
...||. +++.+ .+|.|++.|.|.++.++.+..+.
T Consensus 63 -~~a~n~---~~~~~---~~~~i~~~D~D~~~~~~~l~~~~ 96 (166)
T cd04186 63 -GAGNNQ---GIREA---KGDYVLLLNPDTVVEPGALLELL 96 (166)
T ss_pred -HHHhhH---HHhhC---CCCEEEEECCCcEECccHHHHHH
Confidence 223333 33332 69999999999999999988774
No 8
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=63.95 E-value=77 Score=27.36 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.5
Q ss_pred CCcEEEeeCCCCcCCHHHHHHhh
Q 017399 196 NDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 196 ~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
.+|.|++.|.|..+.++.|..+-
T Consensus 80 ~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 80 RGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHH
Confidence 47999999999999999888774
No 9
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=63.44 E-value=73 Score=25.20 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=50.5
Q ss_pred EeecChHHHHHHHHHHhCcc---ccEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChhhh
Q 017399 101 IIFNNEVDLLEIRWRELNPY---VTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPFVR 177 (372)
Q Consensus 101 f~f~~ElDlLEIRL~eL~dv---VD~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w~~ 177 (372)
++..+|.++|+.-+..+... ...++|+..+.+ +-... ...+......++.++...... +
T Consensus 3 i~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~-----g------ 64 (156)
T cd00761 3 IPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGST------DGTLE-ILEEYAKKDPRVIRVINEENQ-----G------ 64 (156)
T ss_pred EeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCC------ccHHH-HHHHHHhcCCCeEEEEecCCC-----C------
Confidence 34556778888888777665 456777765432 11111 111111112334444432111 1
Q ss_pred hHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 178 ESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 178 E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
-...+|... ... .+|.+++-|.|.++.++.+..+
T Consensus 65 ~~~~~~~~~---~~~---~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 65 LAAARNAGL---KAA---RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred hHHHHHHHH---HHh---cCCEEEEECCCCccCccHHHHH
Confidence 112333333 221 6999999999999999988775
No 10
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=59.59 E-value=6.9 Score=30.54 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=17.8
Q ss_pred HHHHhHhcCCCCCcEEEeeCC
Q 017399 185 INGLLCYAGISNDDLLIMSDA 205 (372)
Q Consensus 185 l~~~l~~~~~~~dDliI~SDv 205 (372)
+.+.|+.+|+++||.|.++|.
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHHHHHHcCCCCCCEEEEccE
Confidence 345788899999999999985
No 11
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=57.25 E-value=1.4e+02 Score=26.45 Aligned_cols=93 Identities=16% Similarity=0.083 Sum_probs=51.5
Q ss_pred EeecChHHHHHHHHHHhCcc----ccEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChhh
Q 017399 101 IIFNNEVDLLEIRWRELNPY----VTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPFV 176 (372)
Q Consensus 101 f~f~~ElDlLEIRL~eL~dv----VD~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w~ 176 (372)
+...||-+.|+-=|+.+... ...+|||....|- + . . +..+.+..-.+.|..+..... .+.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d-~-t-~----~~~~~~~~~~~~i~~~~~~~n-----~G~---- 66 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPD-G-T-A----EIVRELAKEYPRVRLIVRPGK-----RGL---- 66 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCC-C-h-H----HHHHHHHHhCCceEEEecCCC-----CCh----
Confidence 44566767777766666653 4578888755431 1 1 1 111223222234444333210 111
Q ss_pred hhHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 177 RESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 177 ~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
-.++..+++. ..+|.|++-|.|.++.|+.+..+
T Consensus 67 -----~~a~n~g~~~---a~gd~i~~lD~D~~~~~~~l~~l 99 (224)
T cd06442 67 -----GSAYIEGFKA---ARGDVIVVMDADLSHPPEYIPEL 99 (224)
T ss_pred -----HHHHHHHHHH---cCCCEEEEEECCCCCCHHHHHHH
Confidence 1234444443 24699999999999999988766
No 12
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=56.22 E-value=1e+02 Score=27.21 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=20.4
Q ss_pred CcEEEeeCCCCcCCHHHHHHhh
Q 017399 197 DDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 197 dDliI~SDvDEIP~~~~l~~Lk 218 (372)
+|+|++.|.|.++.++.++.|.
T Consensus 73 ~~~i~~~D~D~~~~~~~l~~l~ 94 (221)
T cd02522 73 GDWLLFLHADTRLPPDWDAAII 94 (221)
T ss_pred CCEEEEEcCCCCCChhHHHHHH
Confidence 8999999999999999999863
No 13
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=55.83 E-value=1.5e+02 Score=26.30 Aligned_cols=116 Identities=9% Similarity=0.066 Sum_probs=60.0
Q ss_pred EeecChHHHHHHHHHHhCccc--cEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChhhhh
Q 017399 101 IIFNNEVDLLEIRWRELNPYV--TKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPFVRE 178 (372)
Q Consensus 101 f~f~~ElDlLEIRL~eL~dvV--D~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w~~E 178 (372)
+...||-+.|+-=|+.|...- ...|||..+.| ...... . ++....+++.++........ .+ -
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~--D~t~~~--~----~~~~~~~~v~~i~~~~~~~~--~G------k 66 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASD--DDTAGI--V----RLAITDSRVHLLRRHLPNAR--TG------K 66 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECCCC--cCHHHH--H----hheecCCcEEEEeccCCcCC--CC------H
Confidence 445677788876666665543 35666765554 111111 0 11112345655543211100 11 1
Q ss_pred HHHHHHHHHHhHh----cCCC-CCcEEEeeCCCCcCCHHHHHHhhhcCCCCCceEEEEe
Q 017399 179 SEQRKAINGLLCY----AGIS-NDDLLIMSDADEIPSRHTMRLLQWCDGVPPILHLELK 232 (372)
Q Consensus 179 ~~qRn~l~~~l~~----~~~~-~dDliI~SDvDEIP~~~~l~~Lk~cdg~p~~l~l~lr 232 (372)
...+|...+..+. .|.. .+|+|++.|.|.++.|..|..+...-..|..-....+
T Consensus 67 ~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~ 125 (191)
T cd06436 67 GDALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSR 125 (191)
T ss_pred HHHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeee
Confidence 3445554443321 1222 4589999999999999999887543324544334433
No 14
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=55.17 E-value=1.5e+02 Score=26.64 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.8
Q ss_pred CCcEEEeeCCCCcCCHHHHHHhh
Q 017399 196 NDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 196 ~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
.+|+|++.|.|.++.|+.|..+-
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~ 106 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLV 106 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHH
Confidence 37999999999999999999873
No 15
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=52.04 E-value=1.8e+02 Score=26.22 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=56.1
Q ss_pred EeecChHHHHHHHHHHhCc--cc-c--EEEEEEeCCCccCCCcccc-hhhhHHhhhcccCcEEEEEcCCccCCCCCCCCh
Q 017399 101 IIFNNEVDLLEIRWRELNP--YV-T--KFVILESNTTFTGIPKPLF-FSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDP 174 (372)
Q Consensus 101 f~f~~ElDlLEIRL~eL~d--vV-D--~FVIvES~~TftG~pKpl~-f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~ 174 (372)
+...||-+.|+--|+.|.. +. + .+||+. +.| ...+. ..+....+.....+|.++.-... .+
T Consensus 7 Ip~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD-~s~----D~t~~~~~~~~~~~~~~~~~i~~~~~~~~--------~G 73 (232)
T cd06437 7 LPVFNEKYVVERLIEAACALDYPKDRLEIQVLD-DST----DETVRLAREIVEEYAAQGVNIKHVRRADR--------TG 73 (232)
T ss_pred EecCCcHHHHHHHHHHHHhcCCCccceEEEEEE-CCC----CcHHHHHHHHHHHHhhcCCceEEEECCCC--------CC
Confidence 4456787888877777732 32 2 345555 332 11111 11122233334556766654321 11
Q ss_pred hhhhHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHhhhcCCCCC
Q 017399 175 FVRESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLLQWCDGVPP 225 (372)
Q Consensus 175 w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~Lk~cdg~p~ 225 (372)
+. -.++..+++. ..+|+|++.|.|-++.|+.|..+......++
T Consensus 74 ~k-----~~a~n~g~~~---a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~ 116 (232)
T cd06437 74 YK-----AGALAEGMKV---AKGEYVAIFDADFVPPPDFLQKTPPYFADPK 116 (232)
T ss_pred Cc-----hHHHHHHHHh---CCCCEEEEEcCCCCCChHHHHHhhhhhcCCC
Confidence 21 1123334443 2689999999999999999988754332344
No 16
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=51.72 E-value=57 Score=26.68 Aligned_cols=93 Identities=20% Similarity=0.160 Sum_probs=52.3
Q ss_pred EeecChHHHHHHHHHHhCc---cccEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChhhh
Q 017399 101 IIFNNEVDLLEIRWRELNP---YVTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPFVR 177 (372)
Q Consensus 101 f~f~~ElDlLEIRL~eL~d---vVD~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w~~ 177 (372)
+...||.+.|+--|..|.. ..+..+||..+.| ... .+-.+++.....+|.++..+.. . +.
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~--d~~-----~~~~~~~~~~~~~i~~i~~~~n------~--g~-- 66 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGST--DET-----EEILEEYAESDPNIRYIRNPEN------L--GF-- 66 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-S--SSH-----HHHHHHHHCCSTTEEEEEHCCC------S--HH--
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccc--ccc-----cccccccccccccccccccccc------c--cc--
Confidence 3445666666655555544 4778888876541 111 2223334335678888886521 0 11
Q ss_pred hHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 178 ESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 178 E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
...+ ..+++. ..+|.|++.|.|.++.+..+..|
T Consensus 67 -~~~~---n~~~~~---a~~~~i~~ld~D~~~~~~~l~~l 99 (169)
T PF00535_consen 67 -SAAR---NRGIKH---AKGEYILFLDDDDIISPDWLEEL 99 (169)
T ss_dssp -HHHH---HHHHHH-----SSEEEEEETTEEE-TTHHHHH
T ss_pred -cccc---cccccc---cceeEEEEeCCCceEcHHHHHHH
Confidence 1233 334443 24669999999999999988876
No 17
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=51.65 E-value=1.9e+02 Score=26.29 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=52.4
Q ss_pred CCcEEEEEeecChHHHHHHHHHHhCcc--cc---EEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCC
Q 017399 94 PRRLFDGIIFNNEVDLLEIRWRELNPY--VT---KFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSV 168 (372)
Q Consensus 94 pRkI~D~f~f~~ElDlLEIRL~eL~dv--VD---~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~ 168 (372)
..+|-=++...||-+.|+--|+.+... .+ .+|||..+.+ .... +....+... .+.++..+..
T Consensus 28 ~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~----d~t~---~~~~~~~~~--~v~~i~~~~~---- 94 (251)
T cd06439 28 LPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGST----DGTA---EIAREYADK--GVKLLRFPER---- 94 (251)
T ss_pred CCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC----ccHH---HHHHHHhhC--cEEEEEcCCC----
Confidence 345555566667778888777776442 22 4555553322 1111 111223221 3555443210
Q ss_pred CCCCChhhhhHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 169 GLDKDPFVRESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 169 ~~~~~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
.+ -...+|. +++.+ .+|+|++.|.|.+|.++.+..+
T Consensus 95 -~g------~~~a~n~---gi~~a---~~d~i~~lD~D~~~~~~~l~~l 130 (251)
T cd06439 95 -RG------KAAALNR---ALALA---TGEIVVFTDANALLDPDALRLL 130 (251)
T ss_pred -CC------hHHHHHH---HHHHc---CCCEEEEEccccCcCHHHHHHH
Confidence 11 1223333 33322 3699999999999999988876
No 18
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=50.95 E-value=1.7e+02 Score=25.50 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=21.4
Q ss_pred CCCcEEEeeCCCCcCCHHHHHHhh
Q 017399 195 SNDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 195 ~~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
..+|+|++.|.|-++.|+.+..+.
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~ 103 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELN 103 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHH
Confidence 469999999999999999998773
No 19
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=49.55 E-value=12 Score=29.22 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=14.8
Q ss_pred HHHHhHhcCCCCCcEEEeeCC
Q 017399 185 INGLLCYAGISNDDLLIMSDA 205 (372)
Q Consensus 185 l~~~l~~~~~~~dDliI~SDv 205 (372)
+.+.|+.+|+++||.|.++|.
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp HHHHHHTTT--TT-EEEETTE
T ss_pred HHHHHHHcCCCCCCEEEEcCE
Confidence 345788899999999999985
No 20
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=46.52 E-value=2.1e+02 Score=25.43 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=22.7
Q ss_pred HHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh-hhc
Q 017399 183 KAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL-QWC 220 (372)
Q Consensus 183 n~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L-k~c 220 (372)
.++..+++.. ..|+|++.|.|.+|.|+.|..+ +.+
T Consensus 76 ~a~n~~~~~~---~~d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 76 RALNEALAAA---RGDYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp HHHHHHHHH------SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCCEEEEECCCcEECHHHHHHHHHHH
Confidence 3445555542 4999999999999999999876 444
No 21
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=44.90 E-value=2.5e+02 Score=28.25 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=57.2
Q ss_pred cEEEEEeecChHHHHHHHHHHhCc--cc--cEEEEEEeCCCccCCCcccchhhhHHhhh-ccc--CcEEEEEcCCccCCC
Q 017399 96 RLFDGIIFNNEVDLLEIRWRELNP--YV--TKFVILESNTTFTGIPKPLFFSLNRARYA-FAE--GKIVHGVYSGRSSSV 168 (372)
Q Consensus 96 kI~D~f~f~~ElDlLEIRL~eL~d--vV--D~FVIvES~~TftG~pKpl~f~~~~~rF~-~~~--~KIiy~~l~~~~~~~ 168 (372)
+|-=.+...||-+.|+-=|+.|.. +- -..|||..+.|= ... +..+++. .+. +++..+..+..+
T Consensus 41 ~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD--~T~-----~i~~~~~~~~~~~~~i~vi~~~~~~--- 110 (384)
T TIGR03469 41 AVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTD--GTA-----DIARAAARAYGRGDRLTVVSGQPLP--- 110 (384)
T ss_pred CEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCC--cHH-----HHHHHHHHhcCCCCcEEEecCCCCC---
Confidence 344445556887888887877743 32 367777755431 111 1122232 122 356655432111
Q ss_pred CCCCChhhhhHHHHHHHHHHhHhcCC--CCCcEEEeeCCCCcCCHHHHHHh
Q 017399 169 GLDKDPFVRESEQRKAINGLLCYAGI--SNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 169 ~~~~~~w~~E~~qRn~l~~~l~~~~~--~~dDliI~SDvDEIP~~~~l~~L 217 (372)
.+|.--... +.++++.+.. .++|+|++.|.|.++.|+.+..+
T Consensus 111 ----~g~~Gk~~A---~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~l 154 (384)
T TIGR03469 111 ----PGWSGKLWA---VSQGIAAARTLAPPADYLLLTDADIAHGPDNLARL 154 (384)
T ss_pred ----CCCcchHHH---HHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHH
Confidence 123322223 3334443221 23899999999999999998876
No 22
>PRK11204 N-glycosyltransferase; Provisional
Probab=44.86 E-value=2.4e+02 Score=28.31 Aligned_cols=101 Identities=12% Similarity=0.069 Sum_probs=53.5
Q ss_pred cEEEEEeecChHHHHHHHHHHhCc--cc-cEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCC
Q 017399 96 RLFDGIIFNNEVDLLEIRWRELNP--YV-TKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDK 172 (372)
Q Consensus 96 kI~D~f~f~~ElDlLEIRL~eL~d--vV-D~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~ 172 (372)
+|-=++.-.||-+.++--++.+.. +. ..+|||..+.| +.. .+..++++.-.+++.++..+.. .+
T Consensus 55 ~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~----d~t---~~~l~~~~~~~~~v~~i~~~~n-----~G- 121 (420)
T PRK11204 55 GVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSS----DNT---GEILDRLAAQIPRLRVIHLAEN-----QG- 121 (420)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC----ccH---HHHHHHHHHhCCcEEEEEcCCC-----CC-
Confidence 344445556776666554544432 22 24555543322 110 1222344333455666654311 11
Q ss_pred ChhhhhHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh-hhc
Q 017399 173 DPFVRESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL-QWC 220 (372)
Q Consensus 173 ~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L-k~c 220 (372)
..+++..+++. ..+|.|++-|.|.+|.|+.+..+ +..
T Consensus 122 --------ka~aln~g~~~---a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 122 --------KANALNTGAAA---ARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred --------HHHHHHHHHHH---cCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 12344444543 36899999999999999999877 444
No 23
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=44.36 E-value=1.1e+02 Score=29.25 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=21.7
Q ss_pred CCcEEEeeCCCCcCCHHHHHHhhh
Q 017399 196 NDDLLIMSDADEIPSRHTMRLLQW 219 (372)
Q Consensus 196 ~dDliI~SDvDEIP~~~~l~~Lk~ 219 (372)
.+|+|++-|+|=||+|+.+..+..
T Consensus 88 ~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 88 RGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred CCCEEEEEcCCeeeCHHHHHHHHH
Confidence 799999999999999999987754
No 24
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=44.25 E-value=1.7e+02 Score=30.13 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.9
Q ss_pred CCCcEEEeeCCCCcCCHHHHHHh
Q 017399 195 SNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 195 ~~dDliI~SDvDEIP~~~~l~~L 217 (372)
..+|++++-|.|.+|.|+++..+
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~l 176 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYL 176 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHH
Confidence 46899999999999999999876
No 25
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=42.74 E-value=1.4e+02 Score=25.49 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=20.7
Q ss_pred CCcEEEeeCCCCcCCHHHHHHhhh
Q 017399 196 NDDLLIMSDADEIPSRHTMRLLQW 219 (372)
Q Consensus 196 ~dDliI~SDvDEIP~~~~l~~Lk~ 219 (372)
.+|.|++-|.|.++.|+.|..|-.
T Consensus 79 ~gd~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 79 RGDIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 459999999999999999987743
No 26
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=41.48 E-value=34 Score=34.22 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=28.5
Q ss_pred HHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh-hhcC
Q 017399 182 RKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL-QWCD 221 (372)
Q Consensus 182 Rn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L-k~cd 221 (372)
.+++..+++. ..+|+|++.|+|-+|.++.|..+ +..+
T Consensus 126 ~~al~~~l~~---~~~d~V~~~DaD~~~~~d~l~~~~~~f~ 163 (439)
T COG1215 126 AGALNNGLKR---AKGDVVVILDADTVPEPDALRELVSPFE 163 (439)
T ss_pred hHHHHHHHhh---cCCCEEEEEcCCCCCChhHHHHHHhhhc
Confidence 4566666654 34999999999999999999877 4444
No 27
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=41.09 E-value=1.2e+02 Score=26.72 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=25.4
Q ss_pred HHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 017399 183 KAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 183 n~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
+++..+++. ..+|+|++.|.|.++.|+.|..+-
T Consensus 76 ~~~n~g~~~---a~~d~i~~~D~D~~~~~~~l~~l~ 108 (196)
T cd02520 76 NNLIKGYEE---ARYDILVISDSDISVPPDYLRRMV 108 (196)
T ss_pred HHHHHHHHh---CCCCEEEEECCCceEChhHHHHHH
Confidence 344455553 358999999999999999998774
No 28
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=39.87 E-value=42 Score=30.17 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=28.0
Q ss_pred HHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh-hhcC
Q 017399 182 RKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL-QWCD 221 (372)
Q Consensus 182 Rn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L-k~cd 221 (372)
.+++..+++.+ .+|+|++.|.|.+|.++.|..+ +.++
T Consensus 66 ~~a~n~g~~~a---~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 66 RRALAEGIRHV---TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 34555566543 6899999999999999999876 4444
No 29
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.28 E-value=2.6e+02 Score=24.38 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCCcEEEeeCCCCcCCHHHHHHhh
Q 017399 195 SNDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 195 ~~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
..+|.|++-|.|.++.++.+..|-
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~ 101 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLL 101 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHH
Confidence 468999999999999999998874
No 30
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=36.41 E-value=1.7e+02 Score=32.64 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=25.5
Q ss_pred HHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 184 AINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 184 ~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
.+...++..| ...|.|++.|+|.++.++++..+
T Consensus 209 Nl~~~~~~~~-~~~eyivvLDADs~m~~d~L~~l 241 (691)
T PRK05454 209 NIADFCRRWG-GAYDYMVVLDADSLMSGDTLVRL 241 (691)
T ss_pred HHHHHHHhcC-CCcCEEEEEcCCCCCCHHHHHHH
Confidence 3445555433 36799999999999999999877
No 31
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=36.12 E-value=2.3e+02 Score=22.85 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=24.6
Q ss_pred CCcEEEeeCCCCcCCHHHHHHh-hhcCCCCCc
Q 017399 196 NDDLLIMSDADEIPSRHTMRLL-QWCDGVPPI 226 (372)
Q Consensus 196 ~dDliI~SDvDEIP~~~~l~~L-k~cdg~p~~ 226 (372)
.+|.|++.|.|.++.++.+..+ +.....+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~ 109 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKV 109 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCe
Confidence 7999999999999999999988 544433443
No 32
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=35.11 E-value=3e+02 Score=23.82 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=49.6
Q ss_pred ecChHHHHHHHHHHhCcc--c-cEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChhhhhH
Q 017399 103 FNNEVDLLEIRWRELNPY--V-TKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPFVRES 179 (372)
Q Consensus 103 f~~ElDlLEIRL~eL~dv--V-D~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w~~E~ 179 (372)
++.|++.|+-=|+.|... . ...|||..+.|-.. ..+-.+.+..-.+++.++..+. ..++ .
T Consensus 10 ~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~------~~~~~~~~~~~~~~~~~~~~~~--------~~g~---~ 72 (202)
T cd04184 10 YNTPEKYLREAIESVRAQTYPNWELCIADDASTDPE------VKRVLKKYAAQDPRIKVVFREE--------NGGI---S 72 (202)
T ss_pred ccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChH------HHHHHHHHHhcCCCEEEEEccc--------CCCH---H
Confidence 344447777666666432 2 25677775543211 1111122222345566654321 1111 1
Q ss_pred HHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 017399 180 EQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 180 ~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
..+|.. ++. ..+|.|++.|.|.++.++.+..+.
T Consensus 73 ~a~n~g---~~~---a~~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 73 AATNSA---LEL---ATGEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred HHHHHH---HHh---hcCCEEEEECCCCcCChHHHHHHH
Confidence 234433 332 247999999999999999888663
No 33
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=34.72 E-value=1.3e+02 Score=28.00 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=24.8
Q ss_pred CCCcEEEeeCCCCcCCHHHHHHh-hhcCCCCCc
Q 017399 195 SNDDLLIMSDADEIPSRHTMRLL-QWCDGVPPI 226 (372)
Q Consensus 195 ~~dDliI~SDvDEIP~~~~l~~L-k~cdg~p~~ 226 (372)
..+|+|++.|.|-++.++.|..+ +..+..|..
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~v 104 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEI 104 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCE
Confidence 57999999999999999998866 444324544
No 34
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=33.70 E-value=3.7e+02 Score=26.59 Aligned_cols=97 Identities=19% Similarity=0.109 Sum_probs=54.4
Q ss_pred EEEEEeecChHHHHHHHHHHhCcc------ccEEEEEEeCCCccCCCcccchhhhHHhhh-cccCcEEEEEcCCccCCCC
Q 017399 97 LFDGIIFNNEVDLLEIRWRELNPY------VTKFVILESNTTFTGIPKPLFFSLNRARYA-FAEGKIVHGVYSGRSSSVG 169 (372)
Q Consensus 97 I~D~f~f~~ElDlLEIRL~eL~dv------VD~FVIvES~~TftG~pKpl~f~~~~~rF~-~~~~KIiy~~l~~~~~~~~ 169 (372)
|-=++...||-+-|+--+++|... -..+|||..+.|- +. .+-..+.+ ...++++.+.....
T Consensus 8 vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D-~T------~~il~~~~~~~~~~v~~i~~~~n----- 75 (325)
T PRK10714 8 VSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSD-NS------AEMLVEAAQAPDSHIVAILLNRN----- 75 (325)
T ss_pred EEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCC-cH------HHHHHHHHhhcCCcEEEEEeCCC-----
Confidence 444466678877666555554332 2367777755432 11 11112222 23466766654321
Q ss_pred CCCChhhhhHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 170 LDKDPFVRESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 170 ~~~~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
.+ +-.++..+++. ..+|.|++-|.|...+|+.+..+
T Consensus 76 ~G---------~~~A~~~G~~~---A~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 76 YG---------QHSAIMAGFSH---VTGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CC---------HHHHHHHHHHh---CCCCEEEEECCCCCCCHHHHHHH
Confidence 11 11245555543 36899999999999999988765
No 35
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=32.16 E-value=3.7e+02 Score=25.60 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=52.8
Q ss_pred eecChH-HHHHHHHHHhCccc-----cEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChh
Q 017399 102 IFNNEV-DLLEIRWRELNPYV-----TKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPF 175 (372)
Q Consensus 102 ~f~~El-DlLEIRL~eL~dvV-----D~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w 175 (372)
+..||- +.|+-=|..+.... ...|||+.+.|-.- . .. ..+ .......+.|.++..+.. . ++
T Consensus 5 p~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t-~-~~-~~~--~~~~~~~~~v~vi~~~~n------~--G~ 71 (299)
T cd02510 5 IFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPE-L-KL-LLE--EYYKKYLPKVKVLRLKKR------E--GL 71 (299)
T ss_pred EEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchH-H-HH-HHH--HHHhhcCCcEEEEEcCCC------C--CH
Confidence 344555 77766677765432 37899986653211 0 11 100 011234456777654321 1 11
Q ss_pred hhhHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 176 VRESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 176 ~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
. ..||. +++. ..+|.|++-|.|.++.+..|..|
T Consensus 72 ~---~a~N~---g~~~---A~gd~i~fLD~D~~~~~~wL~~l 104 (299)
T cd02510 72 I---RARIA---GARA---ATGDVLVFLDSHCEVNVGWLEPL 104 (299)
T ss_pred H---HHHHH---HHHH---ccCCEEEEEeCCcccCccHHHHH
Confidence 1 23443 3332 35899999999999999998876
No 36
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=30.71 E-value=3.9e+02 Score=26.76 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=26.0
Q ss_pred HHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 017399 183 KAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 183 n~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
+++.++++. ..+|+|++.|.|-++.|+.|+.+-
T Consensus 116 ~~l~~~~~~---a~ge~i~~~DaD~~~~p~~L~~lv 148 (373)
T TIGR03472 116 SNLINMLPH---ARHDILVIADSDISVGPDYLRQVV 148 (373)
T ss_pred HHHHHHHHh---ccCCEEEEECCCCCcChhHHHHHH
Confidence 445545543 369999999999999999999874
No 37
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=29.81 E-value=4.5e+02 Score=27.08 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=24.0
Q ss_pred HHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 184 AINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 184 ~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
++..+++. ..+|+|++.|.|.+|.|+.++.+
T Consensus 122 AlN~gl~~---s~g~~v~~~DaD~~~~~d~L~~l 152 (439)
T TIGR03111 122 ALNAAIYN---SIGKYIIHIDSDGKLHKDAIKNM 152 (439)
T ss_pred HHHHHHHH---ccCCEEEEECCCCCcChHHHHHH
Confidence 34444543 35899999999999999998876
No 38
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=27.84 E-value=5.7e+02 Score=27.38 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.1
Q ss_pred CcEEEeeCCCCcCCHHHHHHhh
Q 017399 197 DDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 197 dDliI~SDvDEIP~~~~l~~Lk 218 (372)
-|+|++.|+|-+|.|++++.+.
T Consensus 159 ~d~vvi~DAD~~v~Pd~Lr~~~ 180 (504)
T PRK14716 159 FAIIVLHDAEDVIHPLELRLYN 180 (504)
T ss_pred cCEEEEEcCCCCcCccHHHHHH
Confidence 3999999999999999999874
No 39
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=27.55 E-value=80 Score=28.15 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.3
Q ss_pred CCcEEEeeCCCCcCCHHHHHHhh
Q 017399 196 NDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 196 ~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
.+|.|++.|.|.++.|+.|..|-
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~ 106 (234)
T cd06421 84 TGDFVAILDADHVPTPDFLRRTL 106 (234)
T ss_pred CCCEEEEEccccCcCccHHHHHH
Confidence 69999999999999999999874
No 40
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=24.15 E-value=5e+02 Score=22.91 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=24.6
Q ss_pred HHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 017399 184 AINGLLCYAGISNDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 184 ~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
++..+++.+ .+|.|++.|.|..+.|+.+..|-
T Consensus 73 a~~~g~~~a---~gd~i~~ld~D~~~~~~~l~~l~ 104 (211)
T cd04188 73 AVRAGMLAA---RGDYILFADADLATPFEELEKLE 104 (211)
T ss_pred HHHHHHHHh---cCCEEEEEeCCCCCCHHHHHHHH
Confidence 344455533 47999999999999999988774
No 41
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=24.12 E-value=6.9e+02 Score=24.52 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=22.7
Q ss_pred HHHHHhHhcCCCCCcEEEeeCCCCc-CCHHHHHHh
Q 017399 184 AINGLLCYAGISNDDLLIMSDADEI-PSRHTMRLL 217 (372)
Q Consensus 184 ~l~~~l~~~~~~~dDliI~SDvDEI-P~~~~l~~L 217 (372)
+++.++.. ..+|+|++-|.|-+ ++|+.+..|
T Consensus 106 A~~~g~~~---a~gd~vv~lDaD~~~~~p~~l~~l 137 (306)
T PRK13915 106 ALWRSLAA---TTGDIVVFVDADLINFDPMFVPGL 137 (306)
T ss_pred HHHHHHHh---cCCCEEEEEeCccccCCHHHHHHH
Confidence 34444543 46899999999997 888877654
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=22.95 E-value=91 Score=28.08 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=25.4
Q ss_pred HHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 017399 185 INGLLCYAGISNDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 185 l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
|..++.. -...|+|+++|.|-.++|+.|..|-
T Consensus 22 L~~~~~~--~a~~d~~~~~DsDi~v~p~~L~~lv 53 (175)
T PF13506_consen 22 LAQGLEA--GAKYDYLVISDSDIRVPPDYLRELV 53 (175)
T ss_pred HHHHHHh--hCCCCEEEEECCCeeECHHHHHHHH
Confidence 4444442 2689999999999999999999884
No 43
>smart00051 DSL delta serrate ligand.
Probab=22.74 E-value=48 Score=25.45 Aligned_cols=14 Identities=14% Similarity=-0.078 Sum_probs=11.0
Q ss_pred eeeeecCCCCCCCC
Q 017399 50 KISYFFRPLWDKPP 63 (372)
Q Consensus 50 ~~~~~~~p~W~~~~ 63 (372)
..++.|.|||.|+.
T Consensus 49 ~G~~~C~~Gw~G~~ 62 (63)
T smart00051 49 NGNKGCLEGWMGPY 62 (63)
T ss_pred CCCEecCCCCcCCC
Confidence 35678999998875
No 44
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=22.43 E-value=5.5e+02 Score=22.77 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.8
Q ss_pred CCcEEEeeCCCCcCCHHHHHHhh
Q 017399 196 NDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 196 ~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
.+|.|++-|.|.++.|+.|..+-
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHH
Confidence 58999999999999999998774
No 45
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=22.42 E-value=86 Score=29.25 Aligned_cols=58 Identities=16% Similarity=0.089 Sum_probs=35.8
Q ss_pred hcccCcEEEEEcCCccCCCCC-CCChhhhhHHHHHHHHHHhHhcCCC-----CCcEEEeeCCCCcC
Q 017399 150 AFAEGKIVHGVYSGRSSSVGL-DKDPFVRESEQRKAINGLLCYAGIS-----NDDLLIMSDADEIP 209 (372)
Q Consensus 150 ~~~~~KIiy~~l~~~~~~~~~-~~~~w~~E~~qRn~l~~~l~~~~~~-----~dDliI~SDvDEIP 209 (372)
..+..+|..+.++........ ....|....+.|=.+.+++. +++ |.|+|+.+|+||+-
T Consensus 53 ~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ll~--~~~rvlylD~D~lv~~di~~L~ 116 (248)
T cd04194 53 KKYNSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPDLLP--DYDKVLYLDADIIVLGDLSELF 116 (248)
T ss_pred HhcCCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHHHhc--ccCEEEEEeCCEEecCCHHHHh
Confidence 335678888887642211111 35578888899988888775 222 66666666666644
No 46
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=21.91 E-value=2.3e+02 Score=27.25 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHhHhc-CCCCCcEEEeeCCCCcCCHHHHHHhhh
Q 017399 177 RESEQRKAINGLLCYA-GISNDDLLIMSDADEIPSRHTMRLLQW 219 (372)
Q Consensus 177 ~E~~qRn~l~~~l~~~-~~~~dDliI~SDvDEIP~~~~l~~Lk~ 219 (372)
+-.+|||..++-++.. ..+.+=||.+.|-|-+.+-+..+.+|+
T Consensus 75 rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR~ 118 (223)
T cd00218 75 RGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRK 118 (223)
T ss_pred ccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHhc
Confidence 5578999998888752 125778999999999999888888875
No 47
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=20.52 E-value=1.7e+02 Score=25.84 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=21.0
Q ss_pred CCcEEEeeCCCCcCCHHHHHHhh
Q 017399 196 NDDLLIMSDADEIPSRHTMRLLQ 218 (372)
Q Consensus 196 ~dDliI~SDvDEIP~~~~l~~Lk 218 (372)
.+|+|++-|.|.++.|+.|+.+-
T Consensus 82 ~~d~i~~~D~D~~~~~~~l~~l~ 104 (229)
T cd04192 82 KGDWIVTTDADCVVPSNWLLTFV 104 (229)
T ss_pred cCCEEEEECCCcccCHHHHHHHH
Confidence 58999999999999999998774
Done!