Query 017399
Match_columns 372
No_of_seqs 171 out of 208
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:47:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jg7_A BGT, DNA beta-glucosylt 37.5 44 0.0015 31.4 5.4 46 119-164 57-102 (351)
2 1qg8_A Protein (spore coat pol 36.0 1.2E+02 0.004 26.1 7.9 99 102-217 8-109 (255)
3 4fix_A UDP-galactofuranosyl tr 29.8 2.3E+02 0.008 29.5 10.1 104 95-217 180-289 (657)
4 3bcv_A Putative glycosyltransf 29.7 1.8E+02 0.0061 24.6 7.9 92 101-217 11-105 (240)
5 2z86_A Chondroitin synthase; G 27.1 3.5E+02 0.012 27.1 10.7 97 97-217 95-195 (625)
6 2ffu_A Ppgalnact-2, polypeptid 26.0 1.7E+02 0.0059 28.6 8.0 95 96-217 67-167 (501)
7 1xhb_A Polypeptide N-acetylgal 23.0 2.7E+02 0.0093 26.8 8.7 99 96-217 30-135 (472)
8 2ygo_A WIF-1, WNT inhibitory f 21.6 33 0.0011 30.9 1.5 17 51-70 165-181 (188)
9 2d7i_A Polypeptide N-acetylgal 21.5 2.3E+02 0.0079 28.6 8.1 95 100-217 117-217 (570)
10 2pa1_A PDZ and LIM domain prot 19.8 1.7E+02 0.0057 21.4 5.0 38 191-231 41-81 (87)
No 1
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=37.49 E-value=44 Score=31.37 Aligned_cols=46 Identities=17% Similarity=0.070 Sum_probs=35.1
Q ss_pred ccccEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCc
Q 017399 119 PYVTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGR 164 (372)
Q Consensus 119 dvVD~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~ 164 (372)
.+-|..++|-|...|.|..-++.......=.++|++||-|..-+.+
T Consensus 57 n~ydr~~vvn~s~nf~gg~~n~~~~~a~~f~~kykskiyylftdir 102 (351)
T 1jg7_A 57 NDYDRLIVVNSSINFFGGKPNLAILSAQKFMAKYKSKIYYLFTDIR 102 (351)
T ss_dssp GGCSEEEEECCCCCCCTTSCCHHHHHHHHHHHHCCSCEEEEECCTT
T ss_pred cccceEEEEeceeeccCCCccHHHHHHHHHHHHhhceeEEEEeecc
Confidence 3468999999999999987777644333334899999999987754
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=36.01 E-value=1.2e+02 Score=26.14 Aligned_cols=99 Identities=7% Similarity=0.013 Sum_probs=52.9
Q ss_pred eecChHHHHHHHHHHhCcc--cc-EEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChhhhh
Q 017399 102 IFNNEVDLLEIRWRELNPY--VT-KFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPFVRE 178 (372)
Q Consensus 102 ~f~~ElDlLEIRL~eL~dv--VD-~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w~~E 178 (372)
...|+-+.|+--|..+... .+ ..|||....|- + -.+-.++++. .++|.++..+...........+ -
T Consensus 8 p~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d-~------t~~~~~~~~~-~~~i~~i~~~~~~~~~~~~n~G---~ 76 (255)
T 1qg8_A 8 TSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNE-E------TLNVIRPFLN-DNRVRFYQSDISGVKERTEKTR---Y 76 (255)
T ss_dssp EESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCH-H------HHHHHGGGGG-STTEEEEECCCCSHHHHHSSCH---H
T ss_pred EcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCc-h------HHHHHHHHhh-cCCEEEEecccccccccccccC---H
Confidence 3345546676666666432 22 57777755431 0 1122234544 6788887754100000000111 1
Q ss_pred HHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 179 SEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 179 ~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
...||. +++. ..+|.|++.|.|.++.|+.|..+
T Consensus 77 ~~a~N~---gi~~---a~g~~i~~lD~Dd~~~~~~l~~~ 109 (255)
T 1qg8_A 77 AALINQ---AIEM---AEGEYITYATDDNIYMPDRLLKM 109 (255)
T ss_dssp HHHHHH---HHHH---CCCSEEEEEETTEEECTTHHHHH
T ss_pred HHHHHH---HHHH---cCCCEEEEeCCCCccChHHHHHH
Confidence 233444 3443 26899999999999999988865
No 3
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=29.85 E-value=2.3e+02 Score=29.50 Aligned_cols=104 Identities=11% Similarity=-0.065 Sum_probs=63.6
Q ss_pred CcEEEEEeecChHHHHHHHHHHhCc------cccEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCC
Q 017399 95 RRLFDGIIFNNEVDLLEIRWRELNP------YVTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSV 168 (372)
Q Consensus 95 RkI~D~f~f~~ElDlLEIRL~eL~d------vVD~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~ 168 (372)
.+|-=++.-.|+-+.|+--|..|.. .++..|||....|-... ...+.+. .+...++|.++..+ .
T Consensus 180 pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~--~~~~~e~---~~~~~~~I~vI~~~--N--- 249 (657)
T 4fix_A 180 ANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRD--HPDFPAA---AARLGSRLSIHDQP--N--- 249 (657)
T ss_dssp CCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGG--STTHHHH---HHHHGGGEEEEECC--C---
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccc--hHHHHHH---HHhcCCCEEEEECC--C---
Confidence 4554445556777888888888876 56689999977653111 1112222 22344688887643 1
Q ss_pred CCCCChhhhhHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 169 GLDKDPFVRESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 169 ~~~~~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
.++ +..+|.-.+..... ...|.|++.|-|.++.|+.|..|
T Consensus 250 ----~G~---a~a~N~Gl~~A~g~--~~~dyIlfLD~D~~~~pd~L~~l 289 (657)
T 4fix_A 250 ----LGG---SGGYSRVMYEALKN--TDCQQILFMDDDIRLEPDSILRV 289 (657)
T ss_dssp ----CHH---HHHHHHHHHHHHHH--CCCSEEEEECSSEEECTHHHHHH
T ss_pred ----CCH---HHHHHHHHHHHHhc--CCCCEEEEECCCCccChhHHHHH
Confidence 122 23455544333211 26799999999999999998876
No 4
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=29.70 E-value=1.8e+02 Score=24.60 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=52.1
Q ss_pred EeecChHHHHHHHHHHhCcc--cc-EEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCChhhh
Q 017399 101 IIFNNEVDLLEIRWRELNPY--VT-KFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKDPFVR 177 (372)
Q Consensus 101 f~f~~ElDlLEIRL~eL~dv--VD-~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~~w~~ 177 (372)
+...|+-+.|+-=|..|... -+ ..|||....|- + -.+..++++.-.++|.++.-+ . .+
T Consensus 11 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d-~------t~~~~~~~~~~~~~i~~i~~~--n----~G------ 71 (240)
T 3bcv_A 11 VPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPD-N------CPKICDDYAAQYPNIKVIHKK--N----AG------ 71 (240)
T ss_dssp EEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSS-S------HHHHHHHHHHHCSSEEEEECC--C----CC------
T ss_pred EecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCc-C------HHHHHHHHHhhCCCEEEEECC--C----CC------
Confidence 34445557777667666432 22 56777754421 1 012233443334567666421 1 11
Q ss_pred hHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 178 ESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 178 E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
-+..||.. ++.+ .+|.|++-|.|.++.|+.|..|
T Consensus 72 ~~~a~N~g---~~~a---~g~~i~~lD~Dd~~~~~~l~~l 105 (240)
T 3bcv_A 72 LGMACNSG---LDVA---TGEYVAFCDSDDYVDSDMYMTM 105 (240)
T ss_dssp HHHHHHHH---HHHC---CSSEEEECCTTCCCCTTHHHHH
T ss_pred hHHHHHHH---HHHc---CCCEEEEECCCCcCCHHHHHHH
Confidence 13345543 4432 5899999999999999998866
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=27.14 E-value=3.5e+02 Score=27.09 Aligned_cols=97 Identities=13% Similarity=-0.022 Sum_probs=56.5
Q ss_pred EEEEEeecChHHHHHHHHHHhCcc----ccEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCC
Q 017399 97 LFDGIIFNNEVDLLEIRWRELNPY----VTKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDK 172 (372)
Q Consensus 97 I~D~f~f~~ElDlLEIRL~eL~dv----VD~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~ 172 (372)
|-=++...||-+.|+-=|..|... -...|||....|- + ..+..+++.. ...|.++..+.. +.
T Consensus 95 vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d-----~--t~~~~~~~~~-~~~i~~i~~~~~------~~ 160 (625)
T 2z86_A 95 LSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKE-----N--IEEIVREFES-LLNIKYVRQKDY------GY 160 (625)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSS-----C--HHHHHHTTTT-TSCEEEEEECCC------SC
T ss_pred EEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCch-----h--HHHHHHHhhh-cCCeEEEEeCCC------Cc
Confidence 433455567778888778777543 4567788765431 1 1122233321 246777764321 10
Q ss_pred ChhhhhHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 173 DPFVRESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 173 ~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
+ -+..||. +++.+ .+|+|++.|.|.++.|+.|..+
T Consensus 161 -g---~~~a~N~---g~~~a---~g~~v~~lD~D~~~~~~~l~~~ 195 (625)
T 2z86_A 161 -Q---LCAVRNL---GLRAA---KYNYVAILDCDMAPNPLWVQSY 195 (625)
T ss_dssp -C---HHHHHHH---HHHHC---CSSEEEEECTTEEECTTHHHHH
T ss_pred -c---hhHHHHH---HHHhC---CcCEEEEECCCCCCCHHHHHHH
Confidence 0 1233443 34432 6899999999999999988866
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=26.05 E-value=1.7e+02 Score=28.64 Aligned_cols=95 Identities=14% Similarity=-0.001 Sum_probs=54.1
Q ss_pred cEEEEEeecChHH-HHHHHHHHhCccc-----cEEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCC
Q 017399 96 RLFDGIIFNNEVD-LLEIRWRELNPYV-----TKFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVG 169 (372)
Q Consensus 96 kI~D~f~f~~ElD-lLEIRL~eL~dvV-----D~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~ 169 (372)
+|==++.+.||-+ .|+--|+.+.... -..|||....|-.- .... .+ -.++|.++..+..
T Consensus 67 ~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t------~~~~---~~-~~~~v~vi~~~~n----- 131 (501)
T 2ffu_A 67 ATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPE------DGAL---LG-KIEKVRVLRNDRR----- 131 (501)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTH------HHHG---GG-GBTTEEEEECSSC-----
T ss_pred CEEEEEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchH------HHHH---Hh-cCCCEEEEECCCC-----
Confidence 3433455667655 7776666654322 27888886543210 1111 12 2357877765421
Q ss_pred CCCChhhhhHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 170 LDKDPFVRESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 170 ~~~~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
.+. ...|| .+++.+ .+|+|++.|.|-++.|+.|..|
T Consensus 132 ---~G~---~~A~N---~G~~~A---~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 132 ---EGL---MRSRV---RGADAA---QAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp ---CHH---HHHHH---HHHHHC---CSSEEEECCSSEEECTTCHHHH
T ss_pred ---cCH---HHHHH---HHHHhc---CCCEEEEECCCcccCccHHHHH
Confidence 111 12233 344443 5899999999999999988766
No 7
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=23.04 E-value=2.7e+02 Score=26.80 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=57.3
Q ss_pred cEEEEEeecChH-HHHHHHHHHhCccc-----cEEEEEEeCCCccCCCcccchhhhHHhh-hcccCcEEEEEcCCccCCC
Q 017399 96 RLFDGIIFNNEV-DLLEIRWRELNPYV-----TKFVILESNTTFTGIPKPLFFSLNRARY-AFAEGKIVHGVYSGRSSSV 168 (372)
Q Consensus 96 kI~D~f~f~~El-DlLEIRL~eL~dvV-----D~FVIvES~~TftG~pKpl~f~~~~~rF-~~~~~KIiy~~l~~~~~~~ 168 (372)
+|==++.+.||- +.|+-=|+.|.... ...|||....|- +- ..+..+++ +.+..+|.++..+..
T Consensus 30 ~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d-----~~-t~~~l~~~~~~~~~~v~vi~~~~n---- 99 (472)
T 1xhb_A 30 TTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASER-----DF-LKRPLESYVKKLKVPVHVIRMEQR---- 99 (472)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCC-----GG-GTHHHHHHHHSSSSCEEEEECSSC----
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCc-----HH-HHHHHHHHHHHCCCcEEEEECCCC----
Confidence 344445666775 77776666664422 378888865442 10 11223334 233337888776421
Q ss_pred CCCCChhhhhHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 169 GLDKDPFVRESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 169 ~~~~~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
. +. ...|| .+++.+ .+|+|++.|.|-++.|+.|..|
T Consensus 100 --~--G~---~~a~N---~g~~~A---~gd~i~flD~D~~~~p~~L~~l 135 (472)
T 1xhb_A 100 --S--GL---IRARL---KGAAVS---RGQVITFLDAHCECTAGWLEPL 135 (472)
T ss_dssp --C--CH---HHHHH---HHHHHC---CSSEEEEEESSEEECTTCHHHH
T ss_pred --C--Ch---HHHHH---HHHHhc---cCCeEEEECCCeEeCccHHHHH
Confidence 1 11 22333 344433 5899999999999999988765
No 8
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=21.60 E-value=33 Score=30.88 Aligned_cols=17 Identities=6% Similarity=-0.298 Sum_probs=15.6
Q ss_pred eeeecCCCCCCCCCCCCCCC
Q 017399 51 ISYFFRPLWDKPPPPFQYLP 70 (372)
Q Consensus 51 ~~~~~~p~W~~~~~p~~~~p 70 (372)
-.|.|.+||.|+. |.+.
T Consensus 165 ~~C~C~~Gw~G~~---C~~~ 181 (188)
T 2ygo_A 165 RICECPDGFHGPH---CEGT 181 (188)
T ss_dssp SCEECCTTCBTTT---TCBC
T ss_pred CcccCcCCCCCCC---CcCC
Confidence 5899999999999 9887
No 9
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=21.45 E-value=2.3e+02 Score=28.56 Aligned_cols=95 Identities=14% Similarity=0.012 Sum_probs=54.8
Q ss_pred EEeecCh-HHHHHHHHHHhCcc--cc---EEEEEEeCCCccCCCcccchhhhHHhhhcccCcEEEEEcCCccCCCCCCCC
Q 017399 100 GIIFNNE-VDLLEIRWRELNPY--VT---KFVILESNTTFTGIPKPLFFSLNRARYAFAEGKIVHGVYSGRSSSVGLDKD 173 (372)
Q Consensus 100 ~f~f~~E-lDlLEIRL~eL~dv--VD---~FVIvES~~TftG~pKpl~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~~~ 173 (372)
++.+.|| ++.|+--|+.+... -+ ..|||....|- + ...+..+++..-.++|.++..+.. .
T Consensus 117 IIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D-----~-tl~~~l~~~~~~~~~v~vi~~~~n------~-- 182 (570)
T 2d7i_A 117 IIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDR-----E-HLKKPLEDYMALFPSVRILRTKKR------E-- 182 (570)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCC-----G-GGTHHHHHHHTTSTTEEEEECSSC------C--
T ss_pred EEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCc-----H-HHHHHHHHHHHhCCeEEEEECCCC------C--
Confidence 4555676 58887777766432 22 78888865432 1 112223444322368888775421 1
Q ss_pred hhhhhHHHHHHHHHHhHhcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 017399 174 PFVRESEQRKAINGLLCYAGISNDDLLIMSDADEIPSRHTMRLL 217 (372)
Q Consensus 174 ~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~~~~l~~L 217 (372)
+. ...|| .+++.+ .+|+|++.|.|.++.|..|..|
T Consensus 183 G~---~~A~N---~G~~~A---~gd~i~fLD~D~~~~p~~L~~l 217 (570)
T 2d7i_A 183 GL---IRTRM---LGASVA---TGDVITFLDSHCEANVNWLPPL 217 (570)
T ss_dssp CH---HHHHH---HHHHHC---CSSEEEECCSSEEECTTCSHHH
T ss_pred CH---HHHHH---HHHHhc---CCCEEEEEcCCccccccHHHHH
Confidence 11 12233 344432 5899999999999999877654
No 10
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=19.77 E-value=1.7e+02 Score=21.35 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=27.8
Q ss_pred hcCCCCCcEEEeeCCCCcCC---HHHHHHhhhcCCCCCceEEEE
Q 017399 191 YAGISNDDLLIMSDADEIPS---RHTMRLLQWCDGVPPILHLEL 231 (372)
Q Consensus 191 ~~~~~~dDliI~SDvDEIP~---~~~l~~Lk~cdg~p~~l~l~l 231 (372)
.+|++++|+|+--|--.|-+ .+..+.|+... .++.+..
T Consensus 41 ~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~---~~v~l~v 81 (87)
T 2pa1_A 41 DADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP---SPLRLQL 81 (87)
T ss_dssp HTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC---SSEEEEE
T ss_pred HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC---CeEEEEE
Confidence 36899999999988877777 66777777543 4565554
Done!