BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017401
         (372 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A6QCI0|END4_SULNB Probable endonuclease 4 OS=Sulfurovum sp. (strain NBC37-1) GN=nfo
           PE=3 SV=1
          Length = 296

 Score = 33.9 bits (76), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 200 GSQINISYSVKSPGSSVFLIIAQGNEGLRQWLFDPTFPNTTLSWNV-IQGSGVIHQHIFT 258
           G   N   +  + G+  F + A+     RQW+  P    T  ++   ++ +G++ +H+  
Sbjct: 12  GGVDNAPLNAMAIGAKAFAVFAKNQ---RQWVAKPLEEKTIEAFKKNLETAGILPKHVLP 68

Query: 259 SSSYYVGLGNLNSEEVE 275
             SY + LG+   E++E
Sbjct: 69  HDSYLINLGHPEEEKLE 85


>sp|A8GB09|LIPA_SERP5 Lipoyl synthase OS=Serratia proteamaculans (strain 568) GN=lipA
           PE=3 SV=1
          Length = 321

 Score = 33.5 bits (75), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 18/29 (62%)

Query: 253 HQHIFTSSSYYVGLGNLNSEEVEVQLNLR 281
           H HI T S   VGLG  N+E VEV  +LR
Sbjct: 225 HPHIPTKSGLMVGLGETNAEIVEVMRDLR 253


>sp|Q13308|PTK7_HUMAN Inactive tyrosine-protein kinase 7 OS=Homo sapiens GN=PTK7 PE=1
           SV=2
          Length = 1070

 Score = 33.1 bits (74), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 22/154 (14%)

Query: 31  ILVVLVLYPSPSPAP--EREEEQSHNHNNFDHEHHAHRFER------PELDRQNVGVSHE 82
           +L  L   P P P    E ++E +   +    E    ++ER      PE    N G  H 
Sbjct: 498 VLEKLKFTPPPQPQQCMEFDKEATVPCSATGREKPTIKWERADGSSLPEWVTDNAGTLHF 557

Query: 83  GNFTRSDAASWTNVSDDTWPFII---VALTFWFFVSMTLILGVYGPENLTLGPKSSILLQ 139
              TR DA ++T ++ +     I   V LT   F++  +      PE  T+    + LLQ
Sbjct: 558 ARVTRDDAGNYTCIASNGPQGQIRAHVQLTVAVFITFKV-----EPERTTVYQGHTALLQ 612

Query: 140 ------PSPFFVQKVKVQEIYELKPGPKLYAFYN 167
                 P P    K K + +   K GP+++ F N
Sbjct: 613 CEAQGDPKPLIQWKGKDRILDPTKLGPRMHIFQN 646


>sp|A4W814|LIPA_ENT38 Lipoyl synthase OS=Enterobacter sp. (strain 638) GN=lipA PE=3 SV=1
          Length = 321

 Score = 33.1 bits (74), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 253 HQHIFTSSSYYVGLGNLNSEEVEVQLNLR 281
           H HI T S   VGLG  N+E +EV  +LR
Sbjct: 225 HPHIPTKSGLMVGLGETNAEIIEVMRDLR 253


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,183,202
Number of Sequences: 539616
Number of extensions: 6409938
Number of successful extensions: 15644
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 15619
Number of HSP's gapped (non-prelim): 16
length of query: 372
length of database: 191,569,459
effective HSP length: 119
effective length of query: 253
effective length of database: 127,355,155
effective search space: 32220854215
effective search space used: 32220854215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)