Query 017401
Match_columns 372
No_of_seqs 29 out of 31
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 13:49:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bem_A CBP21; chitin-binding p 46.1 89 0.0031 27.6 8.5 38 169-222 57-98 (170)
2 2d73_A Alpha-glucosidase SUSB; 32.8 2.1E+02 0.007 30.9 10.1 63 260-322 648-727 (738)
3 3k1k_C Enhancer; nanobody, ant 29.0 2E+02 0.0067 22.5 7.2 25 291-319 93-117 (123)
4 3ux9_B SCFV antibody; five hel 27.7 1.8E+02 0.0061 24.1 7.1 31 291-321 225-255 (256)
5 1yc7_A Anti-VSG immunoglobulin 26.6 2.2E+02 0.0077 22.0 7.7 29 291-319 90-118 (124)
6 3uam_A Chitin binding domain; 26.1 1E+02 0.0035 28.4 5.7 24 199-222 110-135 (216)
7 3kg5_A B-cell antigen receptor 26.1 1.9E+02 0.0064 23.3 6.8 33 291-324 92-125 (134)
8 1vaz_A NSFL1 cofactor P47; bet 25.1 37 0.0013 27.5 2.3 40 60-100 5-47 (88)
9 1fhg_A Telokin; immunoglobulin 21.3 3E+02 0.01 21.5 7.2 17 195-211 51-67 (154)
10 2yc1_B Single chain antibody f 20.6 3.4E+02 0.012 22.0 7.4 32 291-325 98-129 (146)
No 1
>2bem_A CBP21; chitin-binding protein, chitin degradation, chitin-binding, FNIII-like fold; 1.55A {Serratia marcescens} SCOP: b.1.18.2 PDB: 2lhs_A 2ben_A
Probab=46.09 E-value=89 Score=27.57 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=27.8
Q ss_pred CCCCccc--ceeeeEEEEecCCCcceEEEEeeccceEEEEEEEecC--CCcEEEEEEe
Q 017401 169 PPLDTVS--TWSEKIIVSVPADSHQEWIIYLNKGSQINISYSVKSP--GSSVFLIIAQ 222 (372)
Q Consensus 169 PpLdv~t--~Wses~~~~V~s~ShKeW~y~LNKGS~I~IsYsv~s~--~SsL~LvIaq 222 (372)
..||..+ .|..+..- .| ++++.|....+ .+...++|.|
T Consensus 57 ~~ld~~~~~~W~~t~v~---------------~G-~~~f~w~~TA~H~t~~~~~YITK 98 (170)
T 2bem_A 57 FELDQQTPTRWNKLNLK---------------TG-PNSFTWKLTARHSTTSWRYFITK 98 (170)
T ss_dssp GGGGCCCSSSSCCEEEE---------------SE-EEEEEEEESSCCCEEEEEEEEEC
T ss_pred ccCCCccCCCCccceec---------------Cc-cEEEEEEeecccCCceEEEEECC
Confidence 4466654 48877532 36 78899999988 5679999998
No 2
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Probab=32.81 E-value=2.1e+02 Score=30.91 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=37.4
Q ss_pred cceEEE-EeccCCceeEEEEEE-----EEEEEEe-eccCce-------eeeecC--CCceEEEEee-CCCcEEEEeCCCC
Q 017401 260 SSYYVG-LGNLNSEEVEVQLNL-----RLRAFLY-NTSDAY-------YKCTFA--DGLCSLSVLF-PNGNAIVLTSPKT 322 (372)
Q Consensus 260 s~YYVa-vgNlN~~dVev~Lni-----~V~a~lY-dTt~A~-------y~CS~~--ng~Ctl~L~f-p~tn~vVLTSP~~ 322 (372)
+..||| +.|-+.+++++.|++ +-++.+| |-.+|. |.+... +..=+|++.. |++-+|+...|..
T Consensus 648 ~~WyVG~it~~~~R~l~l~L~FL~~Gk~y~a~iy~Dg~~a~~~~~p~~~~i~~~~V~~~~~L~i~la~gGG~ai~i~~~~ 727 (738)
T 2d73_A 648 DDWYVGCTAGENGHTSKLVFDFLTPGKQYIATVYADAKDADWKENPQAYTIKKGILTNKSKLNLHAANGGGYAISIKEVK 727 (738)
T ss_dssp SCEEEEEEECTTCEEEEEECTTSCTTCCEEEEEEEECTTCBTTTBTTCEEEEEEEECTTCEEEEEECTTCEEEEEEEECS
T ss_pred CcEEEEEeeCCCceEEEeeccccCCCCcEEEEEEEeCCCcccccCCcceEEEEEEECCCCEEEEEEcCCCCEEEEEEEcc
Confidence 677884 444555677777664 3567788 445553 445542 3344566644 7777777766763
No 3
>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*
Probab=28.95 E-value=2e+02 Score=22.49 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=17.4
Q ss_pred CceeeeecCCCceEEEEeeCCCcEEEEeC
Q 017401 291 DAYYKCTFADGLCSLSVLFPNGNAIVLTS 319 (372)
Q Consensus 291 ~A~y~CS~~ng~Ctl~L~fp~tn~vVLTS 319 (372)
.|.|.|...+ | .+.|..+-.+++.+
T Consensus 93 sg~Y~Ca~~~--~--~~~fG~GT~l~~~~ 117 (123)
T 3k1k_C 93 TAVYYCNVNV--G--FEYWGQGTQVTVSS 117 (123)
T ss_dssp CEEEEEEEES--S--SEEECCCEEEEEC-
T ss_pred CEEEEEEEec--C--cceECCCEEEEEec
Confidence 4788998765 4 46787777777765
No 4
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=27.71 E-value=1.8e+02 Score=24.08 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=23.3
Q ss_pred CceeeeecCCCceEEEEeeCCCcEEEEeCCC
Q 017401 291 DAYYKCTFADGLCSLSVLFPNGNAIVLTSPK 321 (372)
Q Consensus 291 ~A~y~CS~~ng~Ctl~L~fp~tn~vVLTSP~ 321 (372)
.+.|.|.-.|+.....+.|..+-.+.+|+|.
T Consensus 225 sG~Y~C~~~~~~~~~~~~~g~gt~l~V~~~~ 255 (256)
T 3ux9_B 225 TAVYYCARYIDFGDHMDFWGQGTLVTVSSLE 255 (256)
T ss_dssp CEEEEEEEEETTTTEEEEECCCEEEEECCC-
T ss_pred CEEEEEEEEcCCCcceEEECCCeEEEEecCC
Confidence 5789999988755557788888888888764
No 5
>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A
Probab=26.56 E-value=2.2e+02 Score=21.98 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=17.6
Q ss_pred CceeeeecCCCceEEEEeeCCCcEEEEeC
Q 017401 291 DAYYKCTFADGLCSLSVLFPNGNAIVLTS 319 (372)
Q Consensus 291 ~A~y~CS~~ng~Ctl~L~fp~tn~vVLTS 319 (372)
.|.|.|...+....-.+.|..+-.+.+.+
T Consensus 90 sg~Y~C~~~~~~~~~~~~fG~GT~l~v~~ 118 (124)
T 1yc7_A 90 TGMYYCQIQCGVRSIREYWGQGTQVTVSS 118 (124)
T ss_dssp CEEEEEEEEECSSSCEEEECCCEEEEEC-
T ss_pred CEEEEEEEEeCCCcccceECCCEEEEEec
Confidence 57788988754222356776666666655
No 6
>3uam_A Chitin binding domain; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, protein binding; 2.00A {Burkholderia pseudomallei}
Probab=26.12 E-value=1e+02 Score=28.43 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=19.6
Q ss_pred ccceEEEEEEEecC--CCcEEEEEEe
Q 017401 199 KGSQINISYSVKSP--GSSVFLIIAQ 222 (372)
Q Consensus 199 KGS~I~IsYsv~s~--~SsL~LvIaq 222 (372)
-|.++++.|..-.+ .+...++|.|
T Consensus 110 ~G~~~tf~w~~TA~H~ts~f~~YITK 135 (216)
T 3uam_A 110 SGQSLQISWSYSMPHKTRRWTYWITK 135 (216)
T ss_dssp TTCEEEEEEEEESCCCEEEEEEEEBC
T ss_pred cCceEEEEEEeeccCCCceEEEEECC
Confidence 37778899998888 5569999987
No 7
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}
Probab=26.06 E-value=1.9e+02 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=17.3
Q ss_pred CceeeeecCCCceEEEEee-CCCcEEEEeCCCCCC
Q 017401 291 DAYYKCTFADGLCSLSVLF-PNGNAIVLTSPKTEQ 324 (372)
Q Consensus 291 ~A~y~CS~~ng~Ctl~L~f-p~tn~vVLTSP~~~q 324 (372)
.|.|.|...+..- ..+.| .++...|.-.|.+.|
T Consensus 92 sg~Y~C~~~~~~~-~~~~fg~GT~L~V~~~p~~~~ 125 (134)
T 3kg5_A 92 NGIYFCQQKCNNT-SEVYQGCGTELRVMGFSTLAQ 125 (134)
T ss_dssp CEEEEEEEECTTT-CCEEECCCEEEEEECC-----
T ss_pred CEEEEEEEEcCCC-CceEECCCEEEEEecCCCHHH
Confidence 5788998776411 24456 566666666666654
No 8
>1vaz_A NSFL1 cofactor P47; beta-BETA-beta-alpha-alpha-beta, novel fold, lipid binding protein; NMR {Rattus norvegicus} SCOP: d.245.1.1
Probab=25.08 E-value=37 Score=27.47 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=21.0
Q ss_pred ccccccccccCCccccceee---eeecceeeccCCccccccCCc
Q 017401 60 HEHHAHRFERPELDRQNVGV---SHEGNFTRSDAASWTNVSDDT 100 (372)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~---~~r~~~~~sd~~~~~~~~~~~ 100 (372)
|.||.|--+|+++..+...+ -||-++++.|. .+....|-.
T Consensus 5 ~~~~~~~~~~~~~~~~~v~~~LtlW~nGFtVdDG-pLR~ydDP~ 47 (88)
T 1vaz_A 5 HHHHHHGSERRRHSGQDVHVVLKLWKTGFSLDNG-DLRSYQDPS 47 (88)
T ss_dssp --------CCCCSCSSCCEEEEEEETTEEECTTS-CEEETTSST
T ss_pred cccccccccccCCCCCCceEEEEEecCceEecCC-CCcCCCCHh
Confidence 56677777888864444322 28889999888 656666543
No 9
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=21.30 E-value=3e+02 Score=21.49 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=13.0
Q ss_pred EEeeccceEEEEEEEec
Q 017401 195 IYLNKGSQINISYSVKS 211 (372)
Q Consensus 195 y~LNKGS~I~IsYsv~s 211 (372)
.-...|+.+.+.+.+..
T Consensus 51 ~~v~~G~~v~L~C~~~g 67 (154)
T 1fhg_A 51 MEVVEGSAARFDCKVEG 67 (154)
T ss_dssp EEEETTSCEEEEEEEEE
T ss_pred EEEeCCCeEEEEEEEEE
Confidence 34578899999888864
No 10
>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L
Probab=20.64 E-value=3.4e+02 Score=22.04 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=16.2
Q ss_pred CceeeeecCCCceEEEEeeCCCcEEEEeCCCCCCC
Q 017401 291 DAYYKCTFADGLCSLSVLFPNGNAIVLTSPKTEQD 325 (372)
Q Consensus 291 ~A~y~CS~~ng~Ctl~L~fp~tn~vVLTSP~~~qg 325 (372)
.+.|.|...+.. .+.|..+-.+.+..|.+.+-
T Consensus 98 sG~Y~C~~~~~~---~~~fg~GT~L~V~~~~~~~~ 129 (146)
T 2yc1_B 98 FAIYYCQQYRYS---PRTFGQGTKVEIKRAAAEQK 129 (146)
T ss_dssp CSEEEEEECSSS---SCEECCCEEEEEC-------
T ss_pred CEEEEEEEecCC---CCeECCCEEEEEeCCccccC
Confidence 588999988652 35565555555555555443
Done!