Query 017401
Match_columns 372
No_of_seqs 29 out of 31
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 13:49:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017401.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017401hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fhga_ b.1.1.4 (A:) Telokin { 65.9 8.6 0.00063 27.2 6.6 16 196-211 19-34 (102)
2 d1g1ca_ b.1.1.4 (A:) Titin {Hu 62.2 12 0.00087 26.1 6.7 15 197-211 16-30 (98)
3 d2nxyb2 b.1.1.3 (B:1098-1181) 44.1 30 0.0022 23.5 6.2 15 197-211 11-25 (84)
4 d1he7a_ b.1.1.4 (A:) High affi 36.1 67 0.0049 22.7 7.5 67 235-308 26-96 (107)
5 d1ypzf1 b.1.1.1 (F:1-120) T-ce 27.8 84 0.0061 23.3 6.9 50 251-317 67-118 (120)
6 d1iray3 b.1.1.4 (Y:205-311) Ty 25.6 31 0.0022 24.0 3.7 16 196-211 13-28 (107)
7 d1tvda_ b.1.1.1 (A:) T-cell an 24.0 99 0.0072 22.3 6.5 16 197-212 12-27 (116)
8 d1gsma1 b.1.1.4 (A:1-90) Mucos 22.8 1.1E+02 0.0081 21.0 6.9 17 195-211 13-29 (90)
9 d1wwca_ b.1.1.4 (A:) NT3 bindi 21.7 73 0.0053 22.1 5.2 11 291-301 74-84 (105)
10 d2fdbp2 b.1.1.4 (P:2252-2360) 19.6 1E+02 0.0076 20.8 5.6 16 197-212 17-32 (109)
No 1
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}
Probab=65.91 E-value=8.6 Score=27.15 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=12.0
Q ss_pred EeeccceEEEEEEEec
Q 017401 196 YLNKGSQINISYSVKS 211 (372)
Q Consensus 196 ~LNKGS~I~IsYsv~s 211 (372)
....|+.+.+.+.+..
T Consensus 19 ~v~~G~~~~l~C~~~g 34 (102)
T d1fhga_ 19 EVVEGSAARFDCKVEG 34 (102)
T ss_dssp EEETTSCEEEEEEEEE
T ss_pred EEecCCcEEEEEEEEe
Confidence 3567888888888765
No 2
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}
Probab=62.15 E-value=12 Score=26.14 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=10.4
Q ss_pred eeccceEEEEEEEec
Q 017401 197 LNKGSQINISYSVKS 211 (372)
Q Consensus 197 LNKGS~I~IsYsv~s 211 (372)
...|..+.+.+.|.+
T Consensus 16 v~~g~~v~l~c~v~g 30 (98)
T d1g1ca_ 16 VGQGSDAHFRVRVVG 30 (98)
T ss_dssp EETTSCEEEEEEEEE
T ss_pred EcCCCcEEEEEEEEE
Confidence 567777777777654
No 3
>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.13 E-value=30 Score=23.52 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=11.6
Q ss_pred eeccceEEEEEEEec
Q 017401 197 LNKGSQINISYSVKS 211 (372)
Q Consensus 197 LNKGS~I~IsYsv~s 211 (372)
+.+|+++.+.+.+.+
T Consensus 11 v~~G~~~~L~C~~~g 25 (84)
T d2nxyb2 11 LLQGQSLTLTLESPP 25 (84)
T ss_dssp EETTCCEEEEEECCT
T ss_pred EECCCeEEEEEEeEc
Confidence 567888888887765
No 4
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.05 E-value=67 Score=22.67 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=39.2
Q ss_pred CCCCCcceeeEEecccEEEEEEecccceEEEEeccCCceeEEEEEEEEEEEEeeccCceeeeecCCC----ceEEEEe
Q 017401 235 TFPNTTLSWNVIQGSGVIHQHIFTSSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADG----LCSLSVL 308 (372)
Q Consensus 235 t~PnttlSWnvI~G~G~ieq~I~~ss~YYVavgNlN~~dVev~Lni~V~a~lYdTt~A~y~CS~~ng----~Ctl~L~ 308 (372)
++|..+..|.. +|. .|..++.++.-+.+...........+.|+... ......|.|...|. .+++.|.
T Consensus 26 G~P~P~v~W~~---ng~---~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~A~N~~G~~~~~i~v~ 96 (107)
T d1he7a_ 26 GQPAPSLRWLF---NGS---VLNETSFIFTEFLEPAANETVRHGCLRLNQPT-HVNNGNYTLLAANPFGQASASIMAA 96 (107)
T ss_dssp CSSCCEEEEEE---TTE---ECCCCSSEEEEEECCCSSCCCEEEEEEEESCC-GGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred EecCCeEEEEE---eee---EccCccceeeeeeeeeeeeeccceEEEECccc-HHHCcEEEEEEEeCCCEEEEEEEEE
Confidence 45666777754 343 46667777666655444443334445554442 23467899998876 5666654
No 5
>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}
Probab=27.79 E-value=84 Score=23.27 Aligned_cols=50 Identities=20% Similarity=0.425 Sum_probs=31.6
Q ss_pred EEEEEEec-ccceEEEEeccCCceeEEEEEEEEEEEEeeccCceeeeecCCCceEEEEee-CCCcEEEE
Q 017401 251 VIHQHIFT-SSSYYVGLGNLNSEEVEVQLNLRLRAFLYNTSDAYYKCTFADGLCSLSVLF-PNGNAIVL 317 (372)
Q Consensus 251 ~ieq~I~~-ss~YYVavgNlN~~dVev~Lni~V~a~lYdTt~A~y~CS~~ng~Ctl~L~f-p~tn~vVL 317 (372)
..+.+..+ .+.++|-+.|+..+| .|.|-|....+.....+.| ++|...|+
T Consensus 67 r~~~s~~~~~~~~~L~I~~l~~~D-----------------sa~YyCA~~~~~~~~~~~FG~GT~LtV~ 118 (120)
T d1ypzf1 67 KMEASKNPSASTSILTIYSLEEED-----------------EAIYYCSYGEGSSGFHKVFAEGTKLIVI 118 (120)
T ss_dssp EEEEEECCTTTEEEEEECSCCGGG-----------------CSEEEEEECCTTTCCCCEECSCEEEEEE
T ss_pred cccccccccccccccccccccccc-----------------ceeEEEEEcCCCCCcccEECCCeEEEEE
Confidence 33444432 235667777776554 6899999887766666778 56665555
No 6
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.56 E-value=31 Score=24.00 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=12.6
Q ss_pred EeeccceEEEEEEEec
Q 017401 196 YLNKGSQINISYSVKS 211 (372)
Q Consensus 196 ~LNKGS~I~IsYsv~s 211 (372)
-...|+++.+.+.|..
T Consensus 13 ~v~~G~~v~l~C~v~g 28 (107)
T d1iray3 13 EVDLGSQIQLICNVTG 28 (107)
T ss_dssp ECCTTCCEEEEEEEEE
T ss_pred EEeCCCEEEEEEEecc
Confidence 3466899999998876
No 7
>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}
Probab=23.98 E-value=99 Score=22.29 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=12.6
Q ss_pred eeccceEEEEEEEecC
Q 017401 197 LNKGSQINISYSVKSP 212 (372)
Q Consensus 197 LNKGS~I~IsYsv~s~ 212 (372)
.++|.++.|.++....
T Consensus 12 ~~~G~~vtL~C~~~~~ 27 (116)
T d1tvda_ 12 VASGSEVVLLCTYDTV 27 (116)
T ss_dssp EETTCCEEECCEEECC
T ss_pred EcCCCCEEEEEEEcCC
Confidence 4688899998888764
No 8
>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.77 E-value=1.1e+02 Score=20.95 Aligned_cols=17 Identities=6% Similarity=0.229 Sum_probs=14.0
Q ss_pred EEeeccceEEEEEEEec
Q 017401 195 IYLNKGSQINISYSVKS 211 (372)
Q Consensus 195 y~LNKGS~I~IsYsv~s 211 (372)
.-+..|.++.+.+++.+
T Consensus 13 ~~~~~G~~~~l~C~~~~ 29 (90)
T d1gsma1 13 VAVALGASRQLTCRLAC 29 (90)
T ss_dssp EEEETTCCEEEEEEECC
T ss_pred EEEEeCCcEEEEEEecC
Confidence 46778999999999865
No 9
>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.66 E-value=73 Score=22.08 Aligned_cols=11 Identities=9% Similarity=0.153 Sum_probs=9.1
Q ss_pred CceeeeecCCC
Q 017401 291 DAYYKCTFADG 301 (372)
Q Consensus 291 ~A~y~CS~~ng 301 (372)
...|+|.-.|.
T Consensus 74 ~G~Y~C~a~N~ 84 (105)
T d1wwca_ 74 NGNYTLIAKNP 84 (105)
T ss_dssp CEEEEEEEEET
T ss_pred ceEEEEEEEcC
Confidence 56899999877
No 10
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Probab=19.62 E-value=1e+02 Score=20.76 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=12.6
Q ss_pred eeccceEEEEEEEecC
Q 017401 197 LNKGSQINISYSVKSP 212 (372)
Q Consensus 197 LNKGS~I~IsYsv~s~ 212 (372)
...|+++.+.+.|++.
T Consensus 17 v~~G~~v~l~C~v~g~ 32 (109)
T d2fdbp2 17 TVVGGDVEFVCKVYSD 32 (109)
T ss_dssp ECTTCCEEEEEEEECS
T ss_pred EecCCcEEEEEEEEEc
Confidence 4568999999988863
Done!