BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017402
(372 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O81902|PUB8_ARATH U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8
PE=2 SV=1
Length = 374
Score = 460 bits (1183), Expect = e-129, Method: Compositional matrix adjust.
Identities = 242/374 (64%), Positives = 295/374 (78%), Gaps = 8/374 (2%)
Query: 1 MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
MA P+DF+CPISLEIMSDPVIL SGHTFDR SIQ+W+DSG+RTCPITKLPL + P LI
Sbjct: 1 MAFDLPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYLI 60
Query: 61 PNHALRSLISNFTRTPL-----PKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTK 115
PNHALRSLI NF L P+ Q EH++ Q LIS L S+SS SKLESLT+L +
Sbjct: 61 PNHALRSLILNFAHVSLKESSRPRTQQEHSHSQSQALISTLVSQSSSNASKLESLTRLVR 120
Query: 116 LSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA 175
L+KRDS+ RRK+TESGAV A L+C + S LQEK+LSLLLNLSL+DDNKVGLVA+G
Sbjct: 121 LTKRDSSIRRKVTESGAVRAALDC--VDSCNQVLQEKSLSLLLNLSLEDDNKVGLVADGV 178
Query: 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK 235
+ R+V LR GSPDC+AIAAT++TSLAVVEVNKATIG YP AI+ALVSLL+ G RE+K
Sbjct: 179 IRRIVTVLRVGSPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGN-DRERK 237
Query: 236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVS 295
E+ATALYAL SFP+NRKRVV CG+VPIL+ AD+GLERAVEVL +LVKC+ GREEM +VS
Sbjct: 238 ESATALYALCSFPDNRKRVVDCGSVPILVEAADSGLERAVEVLGLLVKCRGGREEMSKVS 297
Query: 296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVR 355
G V V V +L+ G+ + +Q SLF L+CLCCCS EI + ++EGV++IC G ++++EK+R
Sbjct: 298 GFVEVLVNVLRNGNLKGIQYSLFILNCLCCCSGEIVDEVKREGVVEICFGFEDNESEKIR 357
Query: 356 RNANNLIQTLSGNP 369
RNA L+ TL G P
Sbjct: 358 RNATILVHTLLGIP 371
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12
PE=2 SV=1
Length = 654
Score = 192 bits (488), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 132/382 (34%), Positives = 219/382 (57%), Gaps = 26/382 (6%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
P++F+CPISLE+M+DPVI+SSG T++R I++WL+ GH TCP T+ L + PN+ L
Sbjct: 257 PEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSD-IMTPNYVL 315
Query: 66 RSLISNFTRT----PLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLT---------- 111
RSLI+ + + P +P + + + S + + +E L LT
Sbjct: 316 RSLIAQWCESNGIEPPKRPNISQPSSKASSSSSAPDDEHNKIEELLLKLTSQQPEDRRSA 375
Query: 112 --QLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169
++ L+K+++ +R + SGA+ ++N L I +D T QE A++ +LNLS+ +NK
Sbjct: 376 AGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRT-QEHAVTSILNLSICQENKGK 434
Query: 170 LV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG 228
+V + GAV +V L+ GS + R AA + SL+V++ NK TIG AI LV+LL G
Sbjct: 435 IVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIG-AAGAIPPLVTLLSEG 493
Query: 229 KLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL---ADAGL-ERAVEVLSILVKC 284
R KK+AATAL+ L F N+ + V G VP+LMRL ++G+ + ++ +L+IL
Sbjct: 494 SQ-RGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAILSSH 552
Query: 285 KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICM 344
+G+ E + + V V V +++GS R + S L LC +Q+ +++K G++D+ +
Sbjct: 553 PDGKSE-VGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLI 611
Query: 345 GLLEDDNEKVRRNANNLIQTLS 366
+ E+ ++ +R A L+ S
Sbjct: 612 EMAENGTDRGKRKAAQLLNRFS 633
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica
GN=PUB12 PE=2 SV=1
Length = 611
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 214/377 (56%), Gaps = 22/377 (5%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
PD+F+CPISLE+M DPVI+SSG T++R+ IQ+WLDSGH+TCP T+ PL SL PN
Sbjct: 228 IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPL-SHTSLTPNFV 286
Query: 65 LRSLISNFTRT---PLPKPQ--------LEHANPNPQTLISVLTS-KSSPLESKLESLTQ 112
L+SLIS + LPK + + ++ + L+S++ +S + + + +
Sbjct: 287 LKSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGE 346
Query: 113 LTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA 172
+ L+KR+ +R + E+GA+ ++N L SD T QE A++ LLNLS+ ++NK +V
Sbjct: 347 IRLLAKRNVNNRICIAEAGAIPLLVNLLS-SSDPRT-QEHAVTALLNLSIHENNKASIVD 404
Query: 173 EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIR 232
A+ ++V L+ GS + R AA + SL+VV+ NK TIG AI L++LL +G R
Sbjct: 405 SHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIG-AAGAIPPLINLLCDGS-PR 462
Query: 233 EKKEAATALYALTSFPENRKRVVSCGAVPILMRL----ADAGLERAVEVLSILVKCKEGR 288
KK+AATA++ L + N+ R V G V LM ++ A+ +LSIL EG+
Sbjct: 463 GKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGK 522
Query: 289 EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE 348
+ R S + V+++KTGS R + + L LC E ++ GV D L E
Sbjct: 523 IVIAR-SEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSE 581
Query: 349 DDNEKVRRNANNLIQTL 365
++ +R A+++++ +
Sbjct: 582 TGTDRAKRKASSILELM 598
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica
GN=SPL11 PE=1 SV=2
Length = 694
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 207/379 (54%), Gaps = 23/379 (6%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
PD+F+CPISLE+M DPVI+S+G T++RA I++W+ SGH TCP T+ + +L PN+
Sbjct: 273 IPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKM-STSALTPNYV 331
Query: 65 LRSLISNFTRTPLPKPQLEHANPNPQTL---------ISVLTSK--SSPLESKLESLTQL 113
LRSLIS + T +P PN T I L SK S E + + +L
Sbjct: 332 LRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAEL 391
Query: 114 TKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE 173
L+KR++ +R + E+GA+ +L+ L QE A++ LLNLS+ +DNK +++
Sbjct: 392 RLLAKRNANNRICIAEAGAIPLLLSLLSSSD--LRTQEHAVTALLNLSIHEDNKASIISS 449
Query: 174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIRE 233
GAV +V L+ GS + R AA + SL+V++ K TIG AI ALV LL G R
Sbjct: 450 GAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGM-GAIPALVVLLGEGSQ-RG 507
Query: 234 KKEAATALYALTSFPENRKRVVSCGAVPILMRL----ADAGLERAVEVLSILVKCKEGRE 289
KK+AA AL+ L + N+ R + G VP++M L A ++ A+ +LSIL EG+
Sbjct: 508 KKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGK- 566
Query: 290 EMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE--GVLDICMGLL 347
+ + V V V+M+ +G+ R + + + LC + +R + G++ L
Sbjct: 567 AAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELA 626
Query: 348 EDDNEKVRRNANNLIQTLS 366
+ ++ +R A L++ +S
Sbjct: 627 LNGTDRGKRKAVQLLERMS 645
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1
SV=2
Length = 694
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 207/379 (54%), Gaps = 23/379 (6%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
PD+F+CPISLE+M DPVI+S+G T++RA I++W+ SGH TCP T+ + +L PN+
Sbjct: 273 IPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKM-STSALTPNYV 331
Query: 65 LRSLISNFTRTPLPKPQLEHANPNPQTL---------ISVLTSK--SSPLESKLESLTQL 113
LRSLIS + T +P PN T I L SK S E + + +L
Sbjct: 332 LRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAEL 391
Query: 114 TKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE 173
L+KR++ +R + E+GA+ +L+ L QE A++ LLNLS+ +DNK +++
Sbjct: 392 RLLAKRNANNRICIAEAGAIPLLLSLLSSSD--LRTQEHAVTALLNLSIHEDNKASIISS 449
Query: 174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIRE 233
GAV +V L+ GS + R AA + SL+V++ K TIG AI ALV LL G R
Sbjct: 450 GAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGM-GAIPALVVLLGEGSQ-RG 507
Query: 234 KKEAATALYALTSFPENRKRVVSCGAVPILMRL----ADAGLERAVEVLSILVKCKEGRE 289
KK+AA AL+ L + N+ R + G VP++M L A ++ A+ +LSIL EG+
Sbjct: 508 KKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGK- 566
Query: 290 EMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE--GVLDICMGLL 347
+ + V V V+M+ +G+ R + + + LC + +R + G++ L
Sbjct: 567 AAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELA 626
Query: 348 EDDNEKVRRNANNLIQTLS 366
+ ++ +R A L++ +S
Sbjct: 627 LNGTDRGKRKAVQLLERMS 645
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13
PE=1 SV=1
Length = 660
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 127/383 (33%), Positives = 212/383 (55%), Gaps = 31/383 (8%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
PDDF+CPISLE+M DPVI+SSG T++R I++W++ GH TCP T+ L +L PN+
Sbjct: 256 IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTST-TLTPNYV 314
Query: 65 LRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLES-KLESLT------------ 111
LRSLI+ + +P ++ P+ ++S SSP E+ K+E L
Sbjct: 315 LRSLIAQWCEANDIEPPKPPSSLRPRK----VSSFSSPAEANKIEDLMWRLAYGNPEDQR 370
Query: 112 ----QLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK 167
++ L+KR++ +R + E+GA+ ++ L + +QE +++ LLNLS+ ++NK
Sbjct: 371 SAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS--TPDSRIQEHSVTALLNLSICENNK 428
Query: 168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN 227
+V+ GA+ +V L+ GS + R AA + SL+V++ NK TIG AI LV LL
Sbjct: 429 GAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGAL-GAIPPLVVLLNE 487
Query: 228 GKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL----ADAGLERAVEVLSILVK 283
G R KK+AATAL+ L + N+ + + G +P L RL ++ A+ +L+IL
Sbjct: 488 GTQ-RGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSS 546
Query: 284 CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDIC 343
EG+ ++ S V V+ ++TGS R + + L LC + +++K G++
Sbjct: 547 HPEGK-AIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPL 605
Query: 344 MGLLEDDNEKVRRNANNLIQTLS 366
+ L + ++ +R A L++ +S
Sbjct: 606 IDLAGNGTDRGKRKAAQLLERIS 628
>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10
PE=2 SV=1
Length = 628
Score = 177 bits (450), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 133/384 (34%), Positives = 211/384 (54%), Gaps = 31/384 (8%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
P+DF CPISLE+M DP I+S+G T++R+ IQRW+D G+ +CP T+ L + +L PN+
Sbjct: 243 IPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKL-ENFTLTPNYV 301
Query: 65 LRSLISNF-TRTPLPKP----------------QLEHANPNPQTLISVLTSKSSPLESKL 107
LRSLIS + T+ + +P L + L+ L+S+S +E +
Sbjct: 302 LRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLSSQS--IEDRR 359
Query: 108 ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFT-LQEKALSLLLNLSLDDDN 166
+++++ LSKR + +R + E+GA+ ++ L SDG T QE A++ +LNLS+ + N
Sbjct: 360 TAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLT--SDGDTETQENAVTCILNLSIYEHN 417
Query: 167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ 226
K ++ GAV+ +V LR GS + R AA + SL++ + NK IG AI ALV LLQ
Sbjct: 418 KELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIG-ASGAIMALVDLLQ 476
Query: 227 NGKLIREKKEAATALYALTSFPENRKRVVSCGAV-PILMRLADAGLER----AVEVLSIL 281
G +R KK+AATAL+ L + N+ R V G V P++ L D+ ER A+ +LS+L
Sbjct: 477 YGS-VRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVL 535
Query: 282 VKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLD 341
+ + ++R + + + L+ R + + L CLC E + G +
Sbjct: 536 ASNQVAKTAILR-ANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVV 594
Query: 342 ICMGLLEDDNEKVRRNANNLIQTL 365
M L D E+ +R AN+L++ L
Sbjct: 595 PLMELSRDGTERAKRKANSLLELL 618
>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11
PE=2 SV=2
Length = 612
Score = 174 bits (442), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 125/373 (33%), Positives = 207/373 (55%), Gaps = 18/373 (4%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
P DF CP+SLE+M DPVI+++G T++RA IQRW+D G+ TCP T+ L + +L PN+
Sbjct: 241 IPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKL-ENFTLTPNYV 299
Query: 65 LRSLISNF-----TRTPLPKPQLEHANPNPQTLISVLTSK--SSPLESKLESLTQLTKLS 117
LRSLIS + P N ++I L + S E + +++++ LS
Sbjct: 300 LRSLISRWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLS 359
Query: 118 KRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVS 177
KR + +R + E+GA+ ++N L S+ QE A++ +LNLS+ ++NK ++ GAV+
Sbjct: 360 KRSTDNRILIAEAGAIPVLVNLLT--SEDVATQENAITCVLNLSIYENNKELIMFAGAVT 417
Query: 178 RVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEA 237
+V LR G+ + R AA + SL++ + NK IG AI ALV LL+NG R KK+A
Sbjct: 418 SIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSG-AIPALVDLLENGT-PRGKKDA 475
Query: 238 ATALYALTSFPENRKRVVSCGAVPILMR-LADAGLERAVE----VLSILVKCKEGREEMM 292
ATAL+ L + N+ R V G V L++ L+D+ R V+ +LS+L ++ + ++
Sbjct: 476 ATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIV 535
Query: 293 RVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNE 352
+ + + + +L+T +R + + L LC E + G + M L ++ E
Sbjct: 536 K-ANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTE 594
Query: 353 KVRRNANNLIQTL 365
+ +R A +L++ L
Sbjct: 595 RGKRKAISLLELL 607
>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14
PE=1 SV=1
Length = 632
Score = 168 bits (425), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 128/379 (33%), Positives = 212/379 (55%), Gaps = 24/379 (6%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
P+ F+CPISLE+M DPVI+S+G T++R+SIQ+WLD+GH+TCP ++ L L PN+
Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL-HAGLTPNYV 306
Query: 65 LRSLISNFTRT---PLPKPQ---------LEHANPNPQTLISVLTSK--SSPLESKLESL 110
L+SLI+ + + LP+ Q ++ +T + L K + E + +
Sbjct: 307 LKSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAA 366
Query: 111 TQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL 170
+L L+KR+ +R + E+GA+ ++ L S QE +++ LLNLS+++ NK +
Sbjct: 367 GELRLLAKRNVDNRVCIAEAGAIPLLVELLS--SPDPRTQEHSVTALLNLSINEGNKGAI 424
Query: 171 VAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL 230
V GA++ +V L+ GS + R AA + SL+V++ NK I AI AL+SLL+ G
Sbjct: 425 VDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAI-GAAGAIQALISLLEEGTR 483
Query: 231 IREKKEAATALYALTSFPENRKRVVSCGAVPILMR-LADAG---LERAVEVLSILVKCKE 286
R KK+AATA++ L + N+ R V G V L R L DAG ++ A+ +L+IL +E
Sbjct: 484 -RGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQE 542
Query: 287 GREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGL 346
G+ + + V V++++TGS R + + L LC + E +R+ G L
Sbjct: 543 GKTAIAEAE-SIPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKEL 601
Query: 347 LEDDNEKVRRNANNLIQTL 365
E+ ++ +R A +L++ +
Sbjct: 602 TENGTDRAKRKAASLLELI 620
>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15
PE=2 SV=2
Length = 660
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 204/374 (54%), Gaps = 20/374 (5%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
P +F CPI+LEIM DPVI+++G T+++ SIQ+W D+GH+TCP T+ L D SL PN A
Sbjct: 290 LPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQEL-DHLSLAPNFA 348
Query: 65 LRSLISNF---TRTPLPKPQLEHANPNPQT-----LISVLTSKSSPLESKLESLTQLTKL 116
L++LI + +P+ ++ + N Q L+ L+ SS LE + S+ Q+ L
Sbjct: 349 LKNLIMQWCEKNNFKIPEKEVSPDSQNEQKDEVSLLVEALS--SSQLEEQRRSVKQMRLL 406
Query: 117 SKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAV 176
++ + +R + +GA+ ++ L G +QE A++ LLNLS+D+ NK + EGA+
Sbjct: 407 ARENPENRVLIANAGAIPLLVQLLSYPDSG--IQENAVTTLLNLSIDEVNKKLISNEGAI 464
Query: 177 SRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKE 236
++ L G+ + R +A + SL++++ NK TIG I LV LLQ+G L R KK+
Sbjct: 465 PNIIEILENGNREARENSAAALFSLSMLDENKVTIG-LSNGIPPLVDLLQHGTL-RGKKD 522
Query: 237 AATALYALTSFPENRKRVVSCGAVP----ILMRLADAGLERAVEVLSILVKCKEGREEMM 292
A TAL+ L+ N+ R + G V +L ++ A+ +L +L EGR+ +
Sbjct: 523 ALTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAIG 582
Query: 293 RVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNE 352
++S + V+ ++ G+ + +C+ L L + + + GV + + +
Sbjct: 583 QLS-FIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTN 641
Query: 353 KVRRNANNLIQTLS 366
+ +R AN LIQ +S
Sbjct: 642 RAQRKANALIQLIS 655
>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17
PE=2 SV=1
Length = 729
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 193/386 (50%), Gaps = 32/386 (8%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
P DF CPISL++M+DPVI+S+G T+DR SI RW++ GH TCP T L D ++PN AL
Sbjct: 306 PKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDS-RIVPNRAL 364
Query: 66 RSLI------------SNFTRTP-------LP-KPQLEHANPNPQTLISVLTSKSSPLES 105
++LI S FT +P LP K +E LI L S ++
Sbjct: 365 KNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATVSILIKYLADGSQAAQT 424
Query: 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165
+ ++ L+K +R + E+GA+ + C + S+ QE +++ +LNLS+ +
Sbjct: 425 V--AAREIRLLAKTGKENRAYIAEAGAIPHL--CRLLTSENAIAQENSVTAMLNLSIYEK 480
Query: 166 NKVGLVAEG-AVSRVVAALRFG-SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVS 223
NK ++ EG + +V+ L G + + + AA + SL+ V K I + AL
Sbjct: 481 NKSRIMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVDQCVEALAL 540
Query: 224 LLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILM-RLADAGL-ERAVEVLSIL 281
LLQNG R KK+A TALY L++ P+N R++ G V L+ L + G+ E A L++L
Sbjct: 541 LLQNGT-PRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGALKNEGVAEEAAGALALL 599
Query: 282 VKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDS--RKEGV 339
V+ G E + + V + M++ G+ R + ++ L LC + R +
Sbjct: 600 VRQSLGAEAIGKEDSAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAAVAEKVLRAPAI 659
Query: 340 LDICMGLLEDDNEKVRRNANNLIQTL 365
+ LL ++ RR A +L +
Sbjct: 660 AGLLQTLLFTGTKRARRKAASLARVF 685
>sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9
PE=1 SV=1
Length = 460
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 191/383 (49%), Gaps = 30/383 (7%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
P++F+CP+S E+M DPV+L+SG T+D+ IQ+WL SG+RTCP T+ LP +L PN +
Sbjct: 75 PEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLP-HTALTPNLLI 133
Query: 66 RSLISNF-TRTPLPKPQLEHAN---------PNPQTLISVLTSK--SSPLESKLESLTQL 113
R +IS + + L H N + + + + L K SS L+ + + +L
Sbjct: 134 REMISKWCKKNGLETKSQYHPNLVNEDETVTRSDREIFNSLLCKVSSSNLQDQKSAAKEL 193
Query: 114 TKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDG--FTLQEKALSLLLNLSLDDDNKVGL 170
L+++ + R ES ++ ++N L +H LQE ++ LLN+S+ DD+ L
Sbjct: 194 RLLTRKGTEFRALFGESPDEITRLVNPL-LHGSNPDEKLQEDVVTTLLNISIHDDSNKKL 252
Query: 171 VAE--GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG 228
V E + ++ ALR G+ R+ AA I +L+ ++ NK IG + L+ LL+ G
Sbjct: 253 VCENPNVIPLLIDALRRGTVATRSNAAAAIFTLSALDSNKVLIGKSGI-LKPLIDLLEEG 311
Query: 229 KLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGL--ERAVEVLSILVKCKE 286
+ K+ A A++ L ENR R V GAV +L + GL + + +L++LV +
Sbjct: 312 NPL-AIKDVAAAIFTLCIAHENRSRAVRDGAVRVLGKKISNGLYVDELLAILAMLVTHWK 370
Query: 287 GREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS----QEICGDSRKEGVLDI 342
EE+ + G + ++ R + ++ L +C +EI + G +
Sbjct: 371 AVEELGELGGVSWLLKITRESECKRNKENAIVILHTICFSDRTKWKEIKEEENAHGTI-- 428
Query: 343 CMGLLEDDNEKVRRNANNLIQTL 365
L + + +R AN ++ L
Sbjct: 429 -TKLSREGTSRAQRKANGILDRL 450
>sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica
GN=PUB4 PE=2 SV=1
Length = 728
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 156/301 (51%), Gaps = 27/301 (8%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
P +F CPISL++M DPV+ S+G T+DR SI +W++ GH TCP + L D L+PN AL
Sbjct: 298 PKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADH-RLVPNRAL 356
Query: 66 RSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLES-------------------K 106
RSLIS + + +N ++ S + +E+ K
Sbjct: 357 RSLISQWCGVYGLQYDSPESNEGMAECVAASCSSRAAMEANKATARILVRMLEDGSENVK 416
Query: 107 LESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN 166
+ ++ L+K +R + + GA+ L C + S+ + QE A++ LLNLS+ + N
Sbjct: 417 AVAAKEIRLLAKTGKQNRAFIADLGAIP--LLCRLLLSNDWMAQENAVTALLNLSIFEPN 474
Query: 167 KVGLV-AEGAVSRVVAALRFG-SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSL 224
K ++ EG + +V L+ G + + + AA + SL+VV K I + P A+ L S+
Sbjct: 475 KGRIMEQEGCLRLIVGVLQNGWTTEAKENAAATLFSLSVVHNFKKLIMNEPGAVEELASM 534
Query: 225 LQNGKLIREKKEAATALYALTSFPENRKRVV-SCGAVPILMRLA-DAGLERAVEVLSILV 282
L G R KK+A AL+ L++ PE+ R++ SC V ++ L D E A L++L+
Sbjct: 535 LTKGT-SRGKKDAVMALFNLSTHPESSARMLESCAVVALIQSLRNDTVSEEAAGALALLM 593
Query: 283 K 283
K
Sbjct: 594 K 594
>sp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16
PE=2 SV=1
Length = 674
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 144/269 (53%), Gaps = 18/269 (6%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
P DF+CPI+LE+M DPV++++G T+DR SI W+ SGH TCP T L SL+PN A
Sbjct: 274 IPADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVL-KHTSLVPNRA 332
Query: 65 LRSLISNFTR---TPLPKPQLEHANPNP--------QTLISVLTSKSSPLESKLESLTQL 113
L++LI + R P P P + ++S L K S +S + +L
Sbjct: 333 LKNLIVLWCRDQKIPFELYGDGGGEPAPCKEAVEFTKMMVSFLIEKLSVADSN-GVVFEL 391
Query: 114 TKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV-A 172
L+K D+ +R + E+GA+ ++ L ++ +LQ A++ +LNLS+ + NK ++
Sbjct: 392 RALAKSDTVARACIAEAGAIPKLVRYLA--TECPSLQINAVTTILNLSILEQNKTRIMET 449
Query: 173 EGAVSRVVAALRFGSP-DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLI 231
+GA++ V+ LR G+ + +A AA + SLA V + +G ++ LV L + G
Sbjct: 450 DGALNGVIEVLRSGATWEAKANAAATLFSLAGVSAYRRRLGRKARVVSGLVDLAKQGP-T 508
Query: 232 REKKEAATALYALTSFPENRKRVVSCGAV 260
K++A A+ L + EN R V G +
Sbjct: 509 SSKRDALVAILNLVAERENVGRFVEAGVM 537
>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23
PE=1 SV=1
Length = 411
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 164/337 (48%), Gaps = 32/337 (9%)
Query: 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHR-TCPITKLPLPDQPSLIPN 62
+ P F CPISLEIM DPVI+S+G T+DR SI++WL +G + +CP+TK + D L PN
Sbjct: 11 EIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDA-DLTPN 69
Query: 63 HALRSLISNF---------TRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQL 113
H LR LI ++ R P P+P + + + ++ +S E++++ L +L
Sbjct: 70 HTLRRLIQSWCTLNASYGVERIPTPRPPICKSE-----IEKLIRDSASSHENQVKCLKRL 124
Query: 114 TKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE 173
++ ++ ++R L +G + N + S+ +L ++AL+LL +L + L+
Sbjct: 125 RQIVSENATNKRCLEAAGVPEFLANIVSNDSENGSLTDEALNLLYHLETSETVLKNLLNN 184
Query: 174 GAVSRVVAAL----RFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK 229
+ +V +L + G + R A ++ ++ V ++ P +V +L +
Sbjct: 185 KKDNNIVKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLKPEVFTEVVQILDDRI 244
Query: 230 LIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL--------ADAGLERAVEVLSIL 281
+ K A L + + NR + V G + +++ L G E A+ VL +L
Sbjct: 245 SQKATKAAMHILVNICPWGRNRHKAVEAGVISVIIELLMDESFTSERRGPEMAMVVLDLL 304
Query: 282 VKCKEGREEMMRVSGCVGVFVKML----KTGSSRAVQ 314
+C EGR E + + V K + +T S RAV+
Sbjct: 305 CQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVR 341
>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2
PE=2 SV=1
Length = 707
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 117/464 (25%), Positives = 204/464 (43%), Gaps = 102/464 (21%)
Query: 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
+ P DF+C +SLE+M+DPVI++SG TF+R IQ+W+D G CP T+ L +L PN
Sbjct: 239 RVPSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQAL-SHTTLTPNF 297
Query: 64 ALRSLISNFTRT-----PLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSK 118
+R+ ++++ T P P + + P P + SV S S S+ +L ++
Sbjct: 298 IVRAFLASWCETNNVYPPDPLELIHSSEPFPLLVESVRASSSENGHSESLDAEELRQVFS 357
Query: 119 R-------------------DSASRRKLT-------------------------ESGAVS 134
R ++A+ R LT E+G+ S
Sbjct: 358 RSASAPGIVSEVVCKTKRNNNAAADRSLTRSNTPWKFPEERHWRHPGIIPATVRETGSSS 417
Query: 135 AVLNCLK-----IHSDGFTLQEKALSLLLNLSLDD-DNKVGLVAEGAVSRVVAALRFGSP 188
++ +K + S Q +A + + L+ + DN++ + A+ +V+ L
Sbjct: 418 SIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDE 477
Query: 189 DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL----------------IR 232
+A A T + +L++ + NK+ I + AI L+ +L+ G L I
Sbjct: 478 RIQADAVTCLLNLSINDNNKSLIAESG-AIVPLIHVLKTGYLEEAKANSAATLFSLSVIE 536
Query: 233 E-------------------------KKEAATALYALTSFPENRKRVVSCGAVPILMRLA 267
E KK+AATAL+ L+ EN+ +V+ GAV L+ L
Sbjct: 537 EYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELM 596
Query: 268 DAGL---ERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324
D E+AV VL+ L +EG+ + G + V V++++ GS+R + + L LC
Sbjct: 597 DPAFGMVEKAVVVLANLATVREGKIAIGE-EGGIPVLVEVVELGSARGKENATAALLQLC 655
Query: 325 CCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368
S + C + +EGV+ + L + + + A NL++ +
Sbjct: 656 THSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAH 699
>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4
PE=1 SV=3
Length = 826
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 145/267 (54%), Gaps = 8/267 (2%)
Query: 99 KSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLL 158
KSS L+++ ++ +L L+K + +R + SGA+ ++ L +S QE A++ LL
Sbjct: 551 KSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELL--YSTDSATQENAVTALL 608
Query: 159 NLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAI 218
NLS++D+NK + GA+ ++ L GS + + +A + SL+V+E NK IG AI
Sbjct: 609 NLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSG-AI 667
Query: 219 NALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD--AGL-ERAV 275
LV LL NG R KK+AATAL+ L+ EN+ +V GAV L+ L D AG+ ++AV
Sbjct: 668 GPLVDLLGNGT-PRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAV 726
Query: 276 EVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSR 335
VL+ L EGR + + G + + V++++ GS+R + + L L S C
Sbjct: 727 AVLANLATIPEGRNAIGQ-EGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVL 785
Query: 336 KEGVLDICMGLLEDDNEKVRRNANNLI 362
+EG + + L + + R A L+
Sbjct: 786 QEGAVPPLVALSQSGTPRAREKAQALL 812
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 55/76 (72%), Gaps = 4/76 (5%)
Query: 8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRS 67
DF CP+SLE+M+DPVI+SSG T+++A I+RW+D G + CP T+ L +LIPN+ +++
Sbjct: 233 DFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLT-HTTLIPNYTVKA 291
Query: 68 LISNFTRT---PLPKP 80
LI+N+ T LP P
Sbjct: 292 LIANWCETNDVKLPDP 307
>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19
PE=2 SV=1
Length = 686
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 168/331 (50%), Gaps = 36/331 (10%)
Query: 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALR 66
DD +CPISLEIMSDPV+L SGHT+DR+SI +W SG+ TCP T L L+ N +++
Sbjct: 280 DDLRCPISLEIMSDPVVLESGHTYDRSSITKWFASGNITCPKTGKTLV-STVLVDNFSVK 338
Query: 67 SLISNFTRT------PLPKPQLEHANPNPQTLISVLTSK-------SSPLESKLESLTQL 113
+I ++++ K +++ A LT++ E +++L ++
Sbjct: 339 QVIQSYSKQNGVVMGQKGKKKVDVAESLAAEEAGKLTAEFLAGELIKGDEEEMVKALVEI 398
Query: 114 TKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE 173
L+K + R L E+G V +++ L+ SD +QE A++ ++NLS D K +V E
Sbjct: 399 RILTKTSTFYRSCLVEAGVVESLMKILR--SDDPRIQENAMAGIMNLSKDIAGKTRIVGE 456
Query: 174 --GAVSRVVAALRFGS-PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL 230
G + +V L G+ + R AA + L+ + IG+ AI LV ++++
Sbjct: 457 DGGGLRLIVEVLNDGARRESRQYAAAALFYLSSLGDYSRLIGEISDAIPGLVRIVKSCDY 516
Query: 231 IREKKEAATALYALTSF----PENRKRVVSCGAVPILMRLADA-----GLERAVEVLSIL 281
K AL A+ S P+N R+++ G VP+L+ L + G+ + ++IL
Sbjct: 517 GDSAKR--NALIAIRSLLMNQPDNHWRILAAGIVPVLLDLVKSEEISDGV--TADSMAIL 572
Query: 282 VKCKEGREEMMRV--SGCVGVFVKMLKTGSS 310
K E + M+ V G + + VK+L GSS
Sbjct: 573 AKMAEYPDGMISVLRRGGLKLAVKIL--GSS 601
>sp|Q9XIJ5|PUB18_ARATH U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18
PE=2 SV=1
Length = 697
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 148/283 (52%), Gaps = 23/283 (8%)
Query: 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALR 66
+D CPISLEIM+DPV++ +GHT+DR+SI +W SG+ TCPIT L L+ N ++R
Sbjct: 290 EDLLCPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKILT-STELVDNVSVR 348
Query: 67 SLISNFTRT------PLPKPQLEHANPNPQTLIS---------VLTSK--SSPLESKLES 109
+I +T + + + H + P++L + LTS+ + E +
Sbjct: 349 QVIRKHCKTNGIVLAGISRRRKSHDDVVPESLAAKGAGKLIAKFLTSELINGGEEMIYRA 408
Query: 110 LTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169
+ ++ +K S +R L ++GAV+ +L L S +QE A++ +LNLS K
Sbjct: 409 VREIRVQTKTSSFNRSCLVKAGAVTPLLKLLS--SVDIRIQENAMAGILNLSKHVTGKSK 466
Query: 170 LVAEGAVSRVVAALRFGSP-DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG 228
+ EG + +V L G+ + R +A+ + L+ VE IG+ P AI L+++++
Sbjct: 467 IAGEG-LKILVEILNEGAKTETRLYSASALFYLSSVEDYSRLIGENPDAIPGLMNIVKGD 525
Query: 229 KL-IREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG 270
K+ A A+ L +N RV++ GAVPIL+ L +G
Sbjct: 526 DYGDSAKRSALLAVMGLLMQSDNHWRVLAAGAVPILLDLLRSG 568
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 69 ISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLT 128
I N ++ K ++ A + L+ +L ++ + E++L S + L LS + SR
Sbjct: 454 ILNLSKHVTGKSKI--AGEGLKILVEIL-NEGAKTETRLYSASALFYLSSVEDYSRLIGE 510
Query: 129 ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSP 188
A+ ++N +K G + + AL ++ L + DN ++A GAV ++ LR G
Sbjct: 511 NPDAIPGLMNIVKGDDYGDSAKRSALLAVMGLLMQSDNHWRVLAAGAVPILLDLLRSGEI 570
Query: 189 DCRAIAATIITSLAVVEVNKATIG 212
A + T + E TIG
Sbjct: 571 SGGLTADCLATLAKLAEYPDGTIG 594
>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25
PE=2 SV=1
Length = 421
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 167/365 (45%), Gaps = 29/365 (7%)
Query: 1 MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHR-TCPITKLPLPDQPSL 59
+ Q P F+CPISLE+M DPV + +G T+DRASI+ W+ G+ TCP+T+ PL D +L
Sbjct: 10 LGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDF-TL 68
Query: 60 IPNHALRSLISNF---------TRTPLPKPQLEHANPNPQTLI----SVLTSKSSPLESK 106
IPNH LR LI + R P PK + A+P + S +T + S+
Sbjct: 69 IPNHTLRRLIQEWCVANRSNGVERIPTPK---QPADPTSVRALLSQASAITGTHVSVRSR 125
Query: 107 LESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN 166
+L +L ++ +R + A ++ L + L ++L+LL+ L + + N
Sbjct: 126 AAALRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSELVSESLALLVMLPITEPN 185
Query: 167 KVGLVAE--GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVN---KATIGDYPYAINAL 221
+ ++ G V + L S + R AA +I ++ + K +I + +
Sbjct: 186 QFVSISSDPGRVEFLTRLLFDSSIETRVNAAALIEIVSTGTKSADLKGSISNSESVFEGV 245
Query: 222 VSLLQNGKLIREK-KEAATALYALTSFPENRKRVVSCGAVPILM-RLA----DAGLERAV 275
+ LL+N R K L+AL S R ++ GA IL+ RLA ERA+
Sbjct: 246 LDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCDTERAL 305
Query: 276 EVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSR 335
+ +L + EG + V + VK + S RA + + L LC + ++
Sbjct: 306 ATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEERWREEAA 365
Query: 336 KEGVL 340
GV+
Sbjct: 366 GAGVV 370
>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30
PE=2 SV=1
Length = 448
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 157/336 (46%), Gaps = 16/336 (4%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
P F CPISLE M DPV L +G T++R +I +W + GH TCP T L D ++ PN
Sbjct: 64 IPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDD-TVTPNKT 122
Query: 65 LRSLISNF--TRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSA 122
L LI + + L K + E ++ L K + ++++ +L++L ++
Sbjct: 123 LHHLIYTWFSQKYVLMKKRSEDVQGRAIEILGTL--KKAKGQARVHALSELKQIVIAHLM 180
Query: 123 SRRKLTESGAVSAV---LNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRV 179
+R+ + E G VS + L H+ G + +++L++L LD D+K GL+ VS +
Sbjct: 181 ARKTVVEEGGVSVISSLLGPFTSHAVG----SEVVAILVSLDLDSDSKSGLMQPAKVSLI 236
Query: 180 VAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAAT 239
V L GS + + A +I L + +A + + L+ L+++ + A
Sbjct: 237 VDMLNDGSNETKINCARLIRGLVEEKGFRAELVSSHSLLVGLMRLVKDKRHRNGVSPALR 296
Query: 240 ALYALTSFPENRKRVVSCGAVP----ILMRLADAGLERAVEVLSILVKCKEGREEMMRVS 295
L ++ + R +VS GAVP IL L LE A+ VL L EGR + +
Sbjct: 297 LLKPISVHKQVRSLMVSIGAVPQLVDILPSLDPECLELALFVLDALCTDVEGRVAVKDSA 356
Query: 296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEIC 331
+ V++L S +L L +C + E C
Sbjct: 357 NTIPYTVRVLMRVSENCTNYALSILWSVCKLAPEEC 392
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 7/267 (2%)
Query: 99 KSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLL 158
KS + K + ++ L+ +R + GA++ +L+ L +S+ QE A++ LL
Sbjct: 482 KSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLL--YSEEKLTQEHAVTALL 539
Query: 159 NLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAI 218
NLS+ + NK +V GA+ +V L G+ + +A + SL+V++VN+ IG AI
Sbjct: 540 NLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAI 599
Query: 219 NALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLE---RAV 275
ALV+LL G R KK+AA+AL+ L+ +N+ R+V AV L+ L D LE +AV
Sbjct: 600 QALVNLLGKGTF-RGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEMVDKAV 658
Query: 276 EVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSR 335
+L+ L EGR+ ++R G + + V+ + GS R + + L LC S + C
Sbjct: 659 ALLANLSAVGEGRQAIVR-EGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVL 717
Query: 336 KEGVLDICMGLLEDDNEKVRRNANNLI 362
+EG + + L + ++ + A L+
Sbjct: 718 QEGAIPPLVALSQSGTQRAKEKAQQLL 744
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
P F+CP+S E+M DPVI++SG TFDR SI++WLD+G CP T+ L Q LIPN+
Sbjct: 238 IPPYFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQ-ELIPNYT 296
Query: 65 LRSLISNF 72
++++I+++
Sbjct: 297 VKAMIASW 304
>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20
PE=2 SV=1
Length = 431
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 155/330 (46%), Gaps = 51/330 (15%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
P F+CPIS E+M DPVI++SG T+DR +I++W +SG++TCP+T L IPNH
Sbjct: 33 IPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQ-IPNHT 91
Query: 65 LRSLISNF---------TRTPLPK-PQLEHANPNPQTLISVLTSKSSPLESKLESLTQLT 114
+R +I + R P P+ P H +S T + + +E +T++T
Sbjct: 92 IRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGD-YAACMEMVTKMT 150
Query: 115 KLSKRDSASRRKLTESGAVSAVLNCLKIHSDG----FTLQE--KALSLLLNLSLDDDNKV 168
+L K +R+ + E+GA + C S+ L+E L+ +L + L+ +K
Sbjct: 151 RLGKESERNRKCVKENGAGLVLCVCFDAFSENANASLLLEETVSVLTWMLPIGLEGQSK- 209
Query: 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSL---------------AVVEVNKATIGD 213
L + +R+V LR G + AA +I L V E +I
Sbjct: 210 -LTTTSSFNRLVELLRNGDQN----AAFLIKELLELNVTHVHALTKINGVQEAFMKSINR 264
Query: 214 YPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLER 273
+N+L+S+ +I +E + L +V+ V +L+ ++ E+
Sbjct: 265 DSTCVNSLISIHH---MILTNQETVSRFLELD--------LVNI-TVEMLVDSENSVCEK 312
Query: 274 AVEVLSILVKCKEGREEMMRVSGCVGVFVK 303
A+ VL+++ + KEGRE++ R + + VK
Sbjct: 313 ALTVLNVICETKEGREKVRRNKLVIPILVK 342
>sp|Q9FHN9|PUB31_ARATH U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31
PE=2 SV=1
Length = 444
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 163/337 (48%), Gaps = 16/337 (4%)
Query: 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
+ P F CPISLE M DPV L +G T++R++I +W + GH TCP T L D + PN
Sbjct: 59 EIPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDL-VTPNK 117
Query: 64 ALRSLISNF--TRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDS 121
L LI + + L K + E ++ L + + ++K+ +L++L ++ +
Sbjct: 118 TLHQLIYTWFSQKYVLMKKRSEDVQGRAIEILGTL--RKAKGKAKVHALSELKQVVMAHA 175
Query: 122 ASRRKLTESGAV---SAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSR 178
+++ + + G V S++L+ H+ G +A+++L+NL LD D+K GL+ VS
Sbjct: 176 IAKKTVVDEGGVFVISSLLSPFTSHAVG----SEAIAILVNLELDSDSKAGLMQPARVSL 231
Query: 179 VVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAA 238
+V L GS + + A +I L + +A + + L+ L+++ + A
Sbjct: 232 MVDMLNDGSIETKINCARLIGRLVEEKGFRAELVSSHSLLVGLMRLVKDRRRRNGVSPAL 291
Query: 239 TALYALTSFPENRKRVVSCGAVPILMR----LADAGLERAVEVLSILVKCKEGREEMMRV 294
T L +++ + R +V GAVP L+ L LE A+ VL L EGR +
Sbjct: 292 TLLKSVSVHKQVRNLLVRIGAVPQLVDVLPCLDVECLESALFVLDSLCLESEGRIALKDS 351
Query: 295 SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEIC 331
+ V++L S + ++ L +C + E C
Sbjct: 352 VNTIPHTVRLLMKVSEKCTNYAISILWSVCKLASEEC 388
>sp|Q3E9F7|PUB46_ARATH Putative U-box domain-containing protein 46 OS=Arabidopsis thaliana
GN=PUB46 PE=3 SV=1
Length = 458
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 157/318 (49%), Gaps = 29/318 (9%)
Query: 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
+ P +F C +S IM +PVI++SG T+++ I WL RTCP TK L + IPNH
Sbjct: 71 EVPKEFICTLSNTIMIEPVIIASGQTYEKRYITEWL-KHERTCPKTKQVLSHRL-WIPNH 128
Query: 64 ALRSLISNFTRTPLPKPQLEHANPNPQTLISVLT----------SKSSPLESKLESLTQL 113
+ LI+ + + +H P+ + + + T S SS + ++E+ +L
Sbjct: 129 LISDLITQWCLV----NKYDHQKPSDELVAELFTSDIEALLQRVSSSSSVADQIEAAKEL 184
Query: 114 TKLSKRDSASRRKLTES--GAVSAVLNCLKIHSDG----FTLQEKALSLLLNLSLDDDNK 167
+K+ R +++ +L+ L + LQE ++ L NLS+ + NK
Sbjct: 185 RHQTKKFPNVRVFFVAGIHDSITRLLSPLSTLDEAVDSSLELQENIVTALFNLSILESNK 244
Query: 168 VGLVAEG--AVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL 225
++AE + + +L+ G+ + R AA ++SL+ ++ NK IG+ A+ AL+ L+
Sbjct: 245 T-VIAENCLVIPLLTKSLKQGTDETRRNAAATLSSLSAIDSNKIIIGNSE-AVKALIDLI 302
Query: 226 QNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG--LERAVEVLSILVK 283
+ G L+ KEA + ++ L EN+ +VVS G + + AG ++ + +L+++
Sbjct: 303 EEGDLL-ATKEATSTVFNLCIVLENKGKVVSAGLIHAATKKIKAGSNVDELLSLLALIST 361
Query: 284 CKEGREEMMRVSGCVGVF 301
EEM ++ +F
Sbjct: 362 HNRAVEEMDKLGFIYDLF 379
>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26
PE=2 SV=1
Length = 421
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 189/405 (46%), Gaps = 56/405 (13%)
Query: 1 MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
+ Q P F+CPISL++MSDPV +S+G T+DR SI W+ G+ TCP+T++ L D +LI
Sbjct: 10 LGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDF-TLI 68
Query: 61 PNHALRSLISNF---------TRTPLPKPQLEHANP-NPQTLI---SVLTSKSSPLESKL 107
PNH LR LI + R P PK + A+P + ++L+ S +T + S+
Sbjct: 69 PNHTLRRLIQEWCVANRSNGVERIPTPK---QPADPISVRSLLSQASAITGTHVSVRSRA 125
Query: 108 ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFT--------LQEKALSLLLN 159
++ +L L+ RDS R L +L + + +D T + AL +LL+
Sbjct: 126 AAIRRLRGLA-RDSEKNRVLIAGHNAREILVRI-LFADIETTSLSSELVSESLALLVLLH 183
Query: 160 LS-------LDDDNKVG----LVAEGAVS-RVVAALRFGSPDCRAIAATIITSLAVVEVN 207
++ D ++VG L+ + ++ RV AA A+ ++T +++
Sbjct: 184 MTETECEAVASDPSRVGFMTRLLFDSSIEIRVNAA---------ALIEMVLTGAKSMDL- 233
Query: 208 KATIGDYPYAINALVSLLQNGKLIREK-KEAATALYALTSFPENRKRVVSCGAVPILM-R 265
K I ++ LL+N R K A++AL + R +S GA IL+ R
Sbjct: 234 KLIISGSDSIFEGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDR 293
Query: 266 LA----DAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLS 321
LA ER + + +L + EG + V + VK + S RA + + L
Sbjct: 294 LAADFDRCDTERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALL 353
Query: 322 CLCCCSQEICGDSRKEGVLDICMGLLEDD-NEKVRRNANNLIQTL 365
LC + ++ G++ + L++ D E+ +R A L++ L
Sbjct: 354 ALCTAEERCRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLL 398
>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21
PE=2 SV=1
Length = 435
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 164/352 (46%), Gaps = 60/352 (17%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP--DQPSLIPN 62
P +F+CPIS+++M DPVI+S+G T+DR SI+ W++SG++TCP+T L DQ IPN
Sbjct: 31 IPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTFDQ---IPN 87
Query: 63 HALRSLISNFTRTPLPKPQLEHANPNPQTL----ISVLTSKSSPLESKLESLTQ------ 112
H +R +I + +E +P Q + + ++ + + KL S T+
Sbjct: 88 HTIRKMIQGWC--------VEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYEK 139
Query: 113 ----LTKLSK--RDSASRRKLTESGAVSAVL-NCLKIHSDGFTLQEKALSLLLNLSLDDD 165
+ K+ K +S RK +V VL +C D F+ EK L+ +LN L
Sbjct: 140 CGVIIEKIKKLGDESEKNRKCVNENSVGWVLCDCF----DKFSGDEK-LTFMLNEILSLL 194
Query: 166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGD----------YP 215
+ + +S++ +A F R +A + ++ V N A I +
Sbjct: 195 TWMFPIGLEGISKLASATSF-----RCVAGLLKSTDDSVRQNAAFIMKEILSLDETRVHS 249
Query: 216 YAI-----NALVSLLQNGKLIREKKEAATALYALT-SFPENRKRVVSCGAVPILMRL--- 266
+A+ ALV L+++ K + A+Y + PE + G V I + +
Sbjct: 250 FAVENGVAEALVKLIRDSVSSSSTKSSLIAIYQMVLQKPEIASEFLEIGLVSITVEMIVD 309
Query: 267 -ADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSL 317
++ E+A+ VL + + + GREE+ + + + + VK + S A + S+
Sbjct: 310 AENSVCEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSM 361
>sp|Q0WUF6|PUB41_ARATH U-box domain-containing protein 41 OS=Arabidopsis thaliana GN=PUB41
PE=2 SV=1
Length = 559
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 115/219 (52%), Gaps = 6/219 (2%)
Query: 149 LQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK 208
+Q A + ++NLSL+ NKV +V G V ++ L+ G+ + + A + SLA+ + NK
Sbjct: 292 VQTNAAASVVNLSLEKQNKVKIVRSGFVPLLIDVLKSGTTEAQEHVAGALFSLALEDENK 351
Query: 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD 268
IG A+ L+ L++ + R +++AA ALY L+ P NR R+V GAVP L+ +
Sbjct: 352 MVIGVL-GAVEPLLHALRSSESERARQDAALALYHLSLIPSNRTRLVRAGAVPTLLSMVR 410
Query: 269 AG--LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTG---SSRAVQCSLFTLSCL 323
+G R + VL L C +G+ M+ + + K+ + G S A + + L L
Sbjct: 411 SGDSTSRILLVLCNLAACPDGKGAMLDGNAVAILVGKLREVGGGDSEAARENCVAVLLTL 470
Query: 324 CCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI 362
C + G + + G ++ M + E+ NE+V+ A+ ++
Sbjct: 471 CQGNLRFRGLASEAGAEEVLMEVEENGNERVKEKASKIL 509
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
P +F CPI+ +MSDPV++SSG TF+R S+Q + G+ + PD ++IPN A+
Sbjct: 32 PPEFLCPITGFLMSDPVVVSSGQTFERLSVQVCRNLGY-IPDLLDGTRPDLSTVIPNLAM 90
Query: 66 RSLISNF 72
+S I ++
Sbjct: 91 KSTIFSW 97
>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22
PE=1 SV=1
Length = 435
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/418 (23%), Positives = 173/418 (41%), Gaps = 101/418 (24%)
Query: 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHR-TCPITKLPLPDQPSLIPN 62
+ P F CPISL+IM DPVI+S+G T+DR SI++WL SG + +CP+TK + + L PN
Sbjct: 6 EIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTK-QVITETDLTPN 64
Query: 63 HALRSLISNF---------TRTPLPKPQLEHANPNPQTLISVLTSKSSPLE-SKLESLTQ 112
H LR LI ++ R P PKP P ++ I L +SS ++++ L +
Sbjct: 65 HTLRRLIQSWCTLNASYGIERIPTPKP------PICKSEIEKLIKESSSSHLNQVKCLKR 118
Query: 113 LTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGF------------------------- 147
L ++ ++ ++R L + + N + D +
Sbjct: 119 LRQIVSENTTNKRCLEAAEVPEFLANIVSNSVDTYNSPSSSLSSSNLNDMCQSNMLENRF 178
Query: 148 ----TLQEKALSLLLNLSLDD-------DNKVGLVAEGAVSRVVAALRFGSPDCRAIAAT 196
+L ++ALS+L +L + +NK G V + ++ G + RA AA
Sbjct: 179 DSSRSLMDEALSVLYHLDTSETALKSLLNNKKG---TNLVKTLTKIMQRGIYESRAYAAL 235
Query: 197 -------IITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE 249
+ + ++ + + G+ ++ +L + + + A L +
Sbjct: 236 LLKKLLEVADPMQIILLERELFGE-------VIQILHDQISHKATRSAMQILVITCPWGR 288
Query: 250 NRKRVVSCGAVPILMRL--------ADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVF 301
NR + V G + +++ L E A+ VL +L +C EGR E + + V
Sbjct: 289 NRHKAVEGGTISMIIELLMDDTFSSERRNSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVV 348
Query: 302 VKML----KTGSSRAVQC------------------SLFTLSCLCCCSQEICGDSRKE 337
K + + S RAV+ L ++ LC Q CG+ KE
Sbjct: 349 SKKILRVSQITSERAVRVLLSVGRFCATPSLLQEMLQLGVVAKLCLVLQVSCGNKTKE 406
>sp|Q9SF15|PUB24_ARATH E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24
PE=1 SV=1
Length = 456
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 157/364 (43%), Gaps = 69/364 (18%)
Query: 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
+ P+ F CPISLEIM DPV SG T+DR +I +WL+ +CP+TK PLP L PNH
Sbjct: 9 EIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWLEKVP-SCPVTKQPLPLDSDLTPNH 67
Query: 64 ALRSLISNF-----TR--TPLPKPQLEHANPNPQTLISVLTSKSSPLESKLESLTQLTKL 116
LR LI ++ TR + P++ N I L + E+L +L L
Sbjct: 68 MLRRLIQHWCVENETRGVVRISTPRVPPGKLNVVEEIKNLKKFGQEALGREETLQKLEVL 127
Query: 117 SKRDSASRRKLTESGA----VSAVLNCLKIHSDG---FTLQEKALSLLLNLSLDDDNKVG 169
+ D +RR + E G + V+ C DG +++L LL + + ++
Sbjct: 128 A-MDGNNRRLMCECGVHKSLILFVVKCTSEDEDGRRRIKGLDESLRLLHLIGIPSNDAKT 186
Query: 170 LVAEGAVSRVVAALRF--GSPDCRAIAATII--------TSLAVV-----EVNKATIGDY 214
++ E RV+ +L + D + A TI+ TS +V E+ K IG
Sbjct: 187 ILMEN--DRVMESLTWVLHQEDFLSKAYTIVLLRNLTEYTSSHIVERLNPEIFKGIIGFL 244
Query: 215 PYAINALVSLLQNGKLIREK-----------------------KEAATA----LYALTSF 247
+N S+ + +RE K+A TA L +S+
Sbjct: 245 KDVVN---SVNRTSPTVRETVQSSSRPSLGKTEPSKLDHSLVIKQAVTAALMILLETSSW 301
Query: 248 PENRKRVVSCGAVPILMRL--ADAGLERAVE----VLSILVKCKEGREEMMRVSGCVGVF 301
NR +V GAV L+ L + G +R E VLS L C GR E++ G + V
Sbjct: 302 SRNRSLLVDLGAVSELIELEISYTGEKRITELMLGVLSRLCCCANGRAEILAHRGGIAVV 361
Query: 302 VKML 305
K L
Sbjct: 362 TKRL 365
>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29
PE=1 SV=1
Length = 415
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 194/396 (48%), Gaps = 39/396 (9%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
P FKCPISL++M PV L +G T+DRASIQRWLD G+ TCP T + L +PN L
Sbjct: 13 PSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPAT-MQLLKTKDFVPNLTL 71
Query: 66 RSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKS-SPLESKLESLTQLTKLSK--RDSA 122
+ LI+ ++ + + + NP + V T + + L +L SL L K+ + +DS
Sbjct: 72 QRLINIWSDSIGRRHNGDSPVLNPPSGREVPTKEEVNVLLERLMSLENLMKIVRFVKDSD 131
Query: 123 SRRKLTESGA--VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD--NKVGLVAEGA--V 176
S R+ V +++ ++ L A+ +L ++ +D + + + L +G +
Sbjct: 132 SNREFLSKKMEFVPMLVDIIRTKKTKIELVIMAIRILDSIKVDRERLSNLMLANDGGDCL 191
Query: 177 SRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINAL---VSLLQNG--KLI 231
+ ++ A++ G+ + + + ++ ++ +K I + + + +S+ ++ LI
Sbjct: 192 TAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSLI 251
Query: 232 REKKEAATALYALTSFPENRKRVVSCGAVP----ILM--RLADAGL-ERAVEVLSILVKC 284
+ + + L ++ R ++++ A+ IL+ L + + E+++++L L
Sbjct: 252 ---EASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLLETLSSK 308
Query: 285 KEGREEMMRVSG--CV-GVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGD-------S 334
+EGR E+ CV GV K+LK S+ A + ++ L CLC +E D
Sbjct: 309 REGRLEICGDDNGRCVEGVVKKLLKV-STTATEHAVTILWCLCYVFRE---DKTVEETVE 364
Query: 335 RKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPS 370
R GV + + + + + VR+ A +LI+ L N S
Sbjct: 365 RSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLKFNSS 400
>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7
PE=2 SV=1
Length = 782
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 30/295 (10%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
P++ +CPISL++M DPVI++SG T++R I++W GH TCP T+ LP SL PN+ +
Sbjct: 273 PEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQLP-HISLTPNNCV 331
Query: 66 RSLIS-----NFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLES----KLESLTQLTKL 116
+ LI+ N T+ P P+ + + L ++KS + S KL+ + +
Sbjct: 332 KGLIASWCEQNGTQIPSGPPESQDLDYWRLALSDSESTKSQSVNSIGSYKLKGVKIVPLE 391
Query: 117 SKRDSASRRKLTESGAV-------SAVLNCLKIHSDGFTL--QEKALSL------LLNLS 161
+ R+ TE V + +N L+ + D + +E+ L + L
Sbjct: 392 ENGTTVVERQNTEESFVSDDDDEEDSDINVLERYQDLLAVLNEEEGLEKKCKVVEKIRLL 451
Query: 162 LDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAI--- 218
L DD + + GA V A LRF A S A+ N A + +
Sbjct: 452 LKDDEEARIFM-GANGFVEALLRFLGSAVDDNNAAAQDSGAMALFNLAVNNNRNKELMLT 510
Query: 219 NALVSLLQNGKLIREKKEAATALY-ALTSFPENRKRVVSCGAVPILMRLADAGLE 272
+ ++ LL+ E +ATALY L+ E + + S AVP L++L +E
Sbjct: 511 SGVIRLLEKMISSAESHGSATALYLNLSCLDEAKSVIGSSQAVPFLVQLLQKEIE 565
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 121/262 (46%), Gaps = 18/262 (6%)
Query: 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCL--KIHSDGF 147
Q L++VL + LE K + + ++ L K D +R + +G V A+L L + +
Sbjct: 426 QDLLAVLNEEEG-LEKKCKVVEKIRLLLKDDEEARIFMGANGFVEALLRFLGSAVDDNNA 484
Query: 148 TLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVN 207
Q+ L NL+++++ L+ V R++ + S + A + +L+ ++
Sbjct: 485 AAQDSGAMALFNLAVNNNRNKELMLTSGVIRLLEKM-ISSAESHGSATALYLNLSCLDEA 543
Query: 208 KATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL- 266
K+ IG A+ LV LLQ + K +A ALY L+++ N ++S + L L
Sbjct: 544 KSVIGS-SQAVPFLVQLLQKEIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLL 602
Query: 267 ADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSS----RAVQCSLF 318
A G +E+++ VL L +EG++E + G + +L G + +AV C L
Sbjct: 603 ASTGENLWIEKSLAVLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTEQEQAVSCLLI 662
Query: 319 TLSCLCCCSQEICGDSRKEGVL 340
+ C Q + +EGV+
Sbjct: 663 LCNGRESCIQMVL----QEGVI 680
>sp|Q9FJP6|PUB38_ARATH U-box domain-containing protein 38 OS=Arabidopsis thaliana GN=PUB38
PE=1 SV=1
Length = 556
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 134/279 (48%), Gaps = 16/279 (5%)
Query: 99 KSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLL 158
KSS + + + L + K+++ + +R L +S + N I S +Q AL+ L+
Sbjct: 234 KSSEIFDQEQGLIMMRKMTRTNDEARVSLCSPRILSLLKNM--IVSRYSLVQTNALASLV 291
Query: 159 NLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAI 218
NLSLD NK+ +V G V ++ L+ GS + + AA I SL++ + NK IG A+
Sbjct: 292 NLSLDKKNKLTIVRLGFVPILIDVLKSGSREAQEHAAGTIFSLSLEDDNKMPIG-VLGAL 350
Query: 219 NALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG--LERAVE 276
L+ L+ + R + ++A ALY LT NR ++V GAVP L + +G RA+
Sbjct: 351 QPLLHALRAAESDRTRHDSALALYHLTLNQTNRSKLVRLGAVPALFSMVRSGESASRALL 410
Query: 277 VLSILVKCKEGREEMMRVSGCVGVFVKMLKT----------GSSRAVQCSLFTLSCLCCC 326
V+ L C EGR M+ + V + V L+ SS A + + L L
Sbjct: 411 VICNLACCSEGRSAMLD-ANAVAILVGKLREEWTEEPTEARSSSSARENCVAALFALSHE 469
Query: 327 SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365
S G +++ +++ + E E+ R A ++Q +
Sbjct: 470 SLRFKGLAKEARAVEVLKEVEERGTERAREKAKKILQLM 508
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKL-----PLPDQPSLI 60
P +F CPIS +MSDPV++SSG TF+R +Q D I KL LPD ++I
Sbjct: 34 PVEFLCPISKSVMSDPVVVSSGQTFERVCVQVCRDLNF----IPKLNDDEESLPDFSNII 89
Query: 61 PNHALRSLISNFTRT-PLPKPQLEHANPNPQTLISVLTSKSSP 102
PN ++S I + T + +PQ P+ T+ +L + P
Sbjct: 90 PNLNMKSTIDTWCDTVGVSRPQ----PPDYSTVERILRQQMPP 128
>sp|Q3E9F5|PUB48_ARATH U-box domain-containing protein 48 OS=Arabidopsis thaliana GN=PUB48
PE=2 SV=1
Length = 456
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)
Query: 2 ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP 61
+ + P +FKC +S IM DPVI+ SG T+++ I WL+ TCP K L + L P
Sbjct: 71 SVEVPKEFKCTLSKTIMIDPVIIFSGQTYEKRYITEWLNHD-LTCPTAKQVLY-RVCLTP 128
Query: 62 NHALRSLIS-----NFTRTPLPKPQ-----LEHANPNPQTLISVLTSKSSPLESKLESLT 111
NH + LI+ N P PKP E ++L+ ++S SS + + E+
Sbjct: 129 NHLINELITRWCLANKYDRPAPKPSDIDYVTELFTDGIESLLQRISSPSSSVADQTEAAK 188
Query: 112 QLTKLSKRDSASRRKLTES--GAVSAVLNCLKIHSDGF----TLQEKALSLLLNLSLDDD 165
+L +++ R + +++ +L L + D LQE ++ L N+S +
Sbjct: 189 ELALQTEKFVNVRDFFIKELPDSITRLLTPLSVLGDEVDSNPELQENIVTALFNMSTFEK 248
Query: 166 NKVGLVAEGAVSRVVA-ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSL 224
NK L V ++A +++ GS R A + SL+ ++ NK IG+ A+ AL+ L
Sbjct: 249 NKTVLAENHQVIPLLAKSMKQGSVVTRRNATLTLASLSDIDSNKIIIGN-SVALKALIDL 307
Query: 225 LQNGKLIREKKEAATALYAL-TSFPENRKRVVSCGAVP 261
+ + +A A+ L EN K+ +S G P
Sbjct: 308 IGELDDLSATHDALCAVIDLCCDERENWKKAISLGLAP 345
>sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6
PE=2 SV=2
Length = 771
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
P++ +CPISL++M DPVI++SG T++R I++W GH +CP T+ LP SL PN+ +
Sbjct: 276 PEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLP-HLSLTPNYCV 334
Query: 66 RSLISNF 72
+ LI+++
Sbjct: 335 KGLIASW 341
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 119/258 (46%), Gaps = 16/258 (6%)
Query: 93 ISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLK--IHSDGFTLQ 150
I + K L K + + + L K + +R + +G V A L L+ +H + Q
Sbjct: 428 ILAIVDKEEDLAKKCKVVENVRILLKDNEEARILMGANGFVEAFLQFLESAVHDNNAAAQ 487
Query: 151 EKALSLLLNLSLDDD-NKVGLVAEGAV---SRVVAALRFGSPDCRAIAATIITSLAVVEV 206
E L NL+++++ NK ++ G + ++++ + P A + +L+ +E
Sbjct: 488 ETGAMALFNLAVNNNRNKELMLTSGVIPLLEKMISCSQSQGP-----ATALYLNLSCLEK 542
Query: 207 NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL 266
K IG A++ V+LL + K +A ALY L+++ N ++S + L L
Sbjct: 543 AKPVIGS-SQAVSFFVNLLLQDTKTQCKLDALHALYNLSTYSPNIPTLLSSNIIKSLQVL 601
Query: 267 ADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSC 322
A G +E+++ VL L +EG+EEM+ G + +L TG + + ++ L
Sbjct: 602 ASTGNHLWIEKSLAVLLNLASSREGKEEMITTQGMISTLATVLDTGDTVEQEQAVSCLVI 661
Query: 323 LCCCSQEICGDSRKEGVL 340
LC S+ +EGV+
Sbjct: 662 LCTGSESCIQMVLQEGVI 679
>sp|Q9FLF4|PUB27_ARATH U-box domain-containing protein 27 OS=Arabidopsis thaliana
GN=PUB27 PE=2 SV=1
Length = 420
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
P F+CPISL++M PV L +G T+DRASIQRWLD G+ TCP T + + IPN L
Sbjct: 11 PTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPAT-MQILQNKDFIPNRTL 69
Query: 66 RSLISNFTRTPLPKPQLEHA 85
+ LI ++ + + +E A
Sbjct: 70 QRLIEIWSDSVRRRTCVESA 89
>sp|Q9LXE3|PUB28_ARATH U-box domain-containing protein 28 OS=Arabidopsis thaliana
GN=PUB28 PE=1 SV=1
Length = 409
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62
T P FKCPISL++M PV LS+G T+DR SIQRWLD G+ TCP T + + +PN
Sbjct: 9 TTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPAT-MQILQNKEFVPN 67
Query: 63 HALRSLISNFT 73
L LI +++
Sbjct: 68 LTLHRLIDHWS 78
>sp|Q9STT1|PUB39_ARATH U-box domain-containing protein 39 OS=Arabidopsis thaliana GN=PUB39
PE=2 SV=1
Length = 509
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 137/273 (50%), Gaps = 15/273 (5%)
Query: 108 ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLK--IHSDGFTLQEKALSLLLNLSLDDD 165
+ L QL K ++ + +R L +L+ L+ I S +Q A + ++NLSL+
Sbjct: 202 QGLIQLRKTTRSNETTRISL----CTDRILSLLRSLIVSRYNIVQTNAAASIVNLSLEKP 257
Query: 166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL 225
NK+ +V G V ++ L+ GS + + + SLAV E NK IG A+ L+ L
Sbjct: 258 NKLKIVRSGFVPLLIDVLKSGSTEAQEHVIGALFSLAVEEENKMVIGVL-GAVEPLLHAL 316
Query: 226 QNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG--LERAVEVLSILVK 283
++ + R +++AA ALY L+ P NR R+V GAVP+++ + +G R + +L L
Sbjct: 317 RSSESERARQDAALALYHLSLIPNNRSRLVKAGAVPMMLSMIRSGESASRILLLLCNLAA 376
Query: 284 CKEGREEMMRVSGCVGVFVKMLKTGSSR----AVQCSLFTLSCLCCCSQEICGDSRKEGV 339
C EG+ M+ + + K+ ++G + A + + L L + G + + G
Sbjct: 377 CSEGKGAMLDGNAVSILVGKLRESGGAESDAAARENCVGALLTLSVGNMRFRGLASEAGA 436
Query: 340 LDICMGLLEDD--NEKVRRNANNLIQTLSGNPS 370
+I ++E + + +++ A+ ++QTL G S
Sbjct: 437 EEILTEIVESESGSGRLKEKASKILQTLRGGGS 469
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 9/86 (10%)
Query: 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQ--RWLDSGHRTCPITKLPLPDQPSLIP 61
+ P +F CPI+ +MSDPV+++SG TF+R S+Q R L + T+ PD ++IP
Sbjct: 9 ETPTEFLCPITGFLMSDPVVVASGQTFERISVQVCRNLSFAPKLHDGTQ---PDLSTVIP 65
Query: 62 NHALRSLISNFTRTPLPKPQLEHANP 87
N A++S I ++ + ++EH P
Sbjct: 66 NLAMKSTILSWCD----RNKMEHPRP 87
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
Q P F CPIS E+M +P + + G T++ S++ WLD+GH T P+T L L +L+PNH
Sbjct: 496 QPPSYFICPISQEVMREPRVAADGFTYEAESLREWLDNGHETSPMTNLKLA-HNNLVPNH 554
Query: 64 ALRSLISNF 72
ALRS I +
Sbjct: 555 ALRSAIQEW 563
>sp|O23225|PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5
PE=2 SV=3
Length = 718
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHA 64
P+ FKC +S +M DPVI+SSG+TF+R IQ+W D G+ +CPI+K L D +L PN
Sbjct: 219 LPEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKL-DDFTLKPNVE 277
Query: 65 LRSLISNF 72
L+S IS +
Sbjct: 278 LKSQISEW 285
>sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45
PE=1 SV=1
Length = 768
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
P++ +CPISL++M DPVI++SG T++R I++W GH TCP T L L PN+ +
Sbjct: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQL-SHLCLTPNYCV 338
Query: 66 RSLISNF 72
++LIS++
Sbjct: 339 KALISSW 345
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 131/279 (46%), Gaps = 13/279 (4%)
Query: 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCL--KIHSDGFTL 149
L++ LT + L K + Q+ L K D +R + E+G V A+L L ++ + +
Sbjct: 426 LLTTLTDVDT-LRKKCRVVEQIRVLLKDDEEARILMGENGCVEALLQFLGSALNENNASA 484
Query: 150 QEKALSLLLNLSLDDD-NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK 208
Q+ L NL++D++ NK ++A G + + L +P I +L+ +E K
Sbjct: 485 QKVGAMALFNLAVDNNRNKELMLASGIIPLLEEML--CNPHSHGSVTAIYLNLSCLEEAK 542
Query: 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD 268
IG A+ +V+LL ++ K +A +L+ L+++P N ++S V L L
Sbjct: 543 PVIGS-SLAVPFMVNLLWTETEVQCKVDALHSLFHLSTYPPNIPCLLSADLVNALQSLTI 601
Query: 269 AGLERAVE----VLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324
+ +R E VL LV + G++EM+ V +L TG + ++ L LC
Sbjct: 602 SDEQRWTEKSLAVLLNLVLNEAGKDEMVSAPSLVSNLCTILDTGEPNEQEQAVSLLLILC 661
Query: 325 CCSQEICGDS-RKEGVLDICMGLLEDDNEKVRRNANNLI 362
S EIC + +EGV+ + + + ++ R A L+
Sbjct: 662 NHS-EICSEMVLQEGVIPSLVSISVNGTQRGRERAQKLL 699
>sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus
GN=CERBERUS PE=2 SV=2
Length = 1485
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 1 MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
M ++ P DF CPI+ +I DPV L +G T++R +IQ WL +G+ TCPIT+ PL S++
Sbjct: 507 MGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPL--SASIL 564
Query: 61 P--NHALRSLISNFTRTPLPKPQLEHANPN-PQTLISVLTSKSSPLESKLESLTQLTKLS 117
P N+ L+ LI+++ + P+ E +N N P+ ++K P+ S + T
Sbjct: 565 PKTNYVLKRLITSW-KEQNPELAQEFSNVNTPRGSSCSPSAKDIPMLSTRQRTTDSPNHK 623
Query: 118 KRDSASRR 125
+D A +R
Sbjct: 624 NKDYARQR 631
>sp|D1FP57|LIN2_LOTJA Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus
GN=LIN PE=1 SV=1
Length = 1485
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 1 MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60
M ++ P DF CPI+ +I DPV L +G T++R +IQ WL +G+ TCPIT+ PL S++
Sbjct: 507 MGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPL--SASIL 564
Query: 61 P--NHALRSLISNFTRTPLPKPQLEHANPN-PQTLISVLTSKSSPLESKLESLTQLTKLS 117
P N+ L+ LI+++ + P+ E +N N P+ ++K P+ S + T
Sbjct: 565 PKTNYVLKRLITSW-KEQNPELAQEFSNVNTPRGSSCSPSAKDIPMLSTRQRTTDSPNHK 623
Query: 118 KRDSASRR 125
+D A +R
Sbjct: 624 NKDYARQR 631
>sp|Q9LQ92|PUB54_ARATH U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54
PE=2 SV=1
Length = 308
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALR 66
+DFKCPIS+EIM DP + + G T++ ++WL SG RT P T PL + +L+PNH LR
Sbjct: 235 EDFKCPISMEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPLENH-NLVPNHTLR 293
Query: 67 SLISNF 72
+I ++
Sbjct: 294 IIIKDW 299
>sp|Q3E9F6|PUB47_ARATH Putative U-box domain-containing protein 47 OS=Arabidopsis thaliana
GN=PUB47 PE=3 SV=1
Length = 445
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 133/280 (47%), Gaps = 21/280 (7%)
Query: 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
+ P +F C +S +IM +P++++SG TF+++ I WL RTCP TK L + +IPNH
Sbjct: 64 EVPKEFICTLSNKIMIEPMLIASGQTFEKSYILEWL-KHERTCPRTKQVLYHR-FMIPNH 121
Query: 64 ALRS------LISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSP--LESKLESLTQLTK 115
+ LI NF R PK E + L S+L SSP +E + E+ +L
Sbjct: 122 LINEVIKEWCLIHNFDR---PKTSDEVIDLFTGDLESLLQRISSPSSVEDQTEAAKELAL 178
Query: 116 LSKRDSASRRKLTES--GAVSAVLNCLKIHSDGF-TLQEKALSLLLNLSLDDDNKVGLVA 172
+KR S+ +++ +L L I D E ++ L S + NK LVA
Sbjct: 179 KAKRFSSVCVYFVAKIPDSITRLLTPLSISEDSNPEFLENIVTALHIFSTSEKNKT-LVA 237
Query: 173 EG--AVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL 230
E + + ++ G+ R +A + SL+ + NK IG+ + AL+ +++ G
Sbjct: 238 ENPLVLPLLAKYMKQGTVLTRIHSAATVNSLSYTDSNKIIIGN-SEVLKALIHVIEEGDS 296
Query: 231 IREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG 270
+ EA +AL L E ++ VS G + ++ AG
Sbjct: 297 LA-TSEAFSALSNLCPVKEISEKAVSEGLIRAAIKKIKAG 335
>sp|Q9FL17|PUB40_ARATH U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40
PE=2 SV=2
Length = 550
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 118/222 (53%), Gaps = 9/222 (4%)
Query: 87 PNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDG 146
P + L++ L KS+ + E+L + ++++ D +SR L + +SA+ + I S
Sbjct: 228 PEEEALLTKL--KSNRISEIEEALISIRRITRIDESSRISLCTTRVISALKSL--IVSRY 283
Query: 147 FTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV 206
T+Q ++L+NLSL+ NKV +V G V ++ L+ GS + + +A +I SLA+ +
Sbjct: 284 ATVQVNVTAVLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSAGVIFSLALEDE 343
Query: 207 NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL 266
NK IG + L+ L++ G + + ++A ALY L+ NR ++V GAV +L+ +
Sbjct: 344 NKTAIGVL-GGLEPLLHLIRVGTEL-TRHDSALALYHLSLVQSNRGKLVKLGAVQMLLGM 401
Query: 267 ADAG--LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLK 306
G + R + +L + C R ++ SG V V +L+
Sbjct: 402 VSLGQMIGRVLLILCNMASCPVSRPALLD-SGGVECMVGVLR 442
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
Query: 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62
T+ P +F CPIS +M+DP+I+SSGH+++RA + +T T P PD ++IPN
Sbjct: 56 TEIPAEFLCPISGSLMADPIIVSSGHSYERACV-----IACKTLGFTPTPPPDFSTVIPN 110
Query: 63 HALRSLISNFTRT---PLPKP 80
AL+S I ++ P PKP
Sbjct: 111 LALKSAIHSWCERRCFPPPKP 131
>sp|D1FP53|LIN_MEDTR Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula
GN=LIN PE=2 SV=1
Length = 1488
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP--NH 63
P DF CPI+ +I SDPV L +G T++R +IQ WL +G+ TCPIT+ L +++P N+
Sbjct: 514 PKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQAL--SANILPKTNY 571
Query: 64 ALRSLISNFTRTPLPKPQLEHANPN 88
L+ LI ++ + P+ E +N N
Sbjct: 572 VLKRLIVSW-KEQNPELAQEFSNSN 595
>sp|Q9SGT2|PUB58_ARATH Putative U-box domain-containing protein 58 OS=Arabidopsis thaliana
GN=PUB58 PE=2 SV=3
Length = 420
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
Q P F CPI+ E+M DP + G T++ SI++WL +GH+T P+T L L +L+PN
Sbjct: 352 QPPSSFFCPITQEVMKDPHFAADGFTYEAESIRKWLSTGHQTSPMTNLRL-SHLTLVPNR 410
Query: 64 ALRSLISN 71
ALRS I
Sbjct: 411 ALRSAIEE 418
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHAL 65
P F CPISLE+M DP + + G T++ +I WL GH T P+T L L+PN AL
Sbjct: 326 PQYFICPISLEVMKDPQLAADGFTYEAEAISTWLQGGHETSPMTNTKL-HHTKLVPNLAL 384
Query: 66 RSLISNF 72
RS I +
Sbjct: 385 RSAIQEW 391
>sp|Q9SGT1|PUB57_ARATH U-box domain-containing protein 57 OS=Arabidopsis thaliana GN=PUB57
PE=2 SV=2
Length = 391
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63
Q P F CPI+ ++M +P + + G T++ +IQ+W+++GHRT P+T L L S PN
Sbjct: 322 QPPPSFICPITQDVMKNPHMAADGFTYELEAIQKWINTGHRTSPMTNLKLS-HFSFFPNR 380
Query: 64 ALRSLISNFTR 74
ALRS I R
Sbjct: 381 ALRSAIEELGR 391
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,236,361
Number of Sequences: 539616
Number of extensions: 4839247
Number of successful extensions: 15361
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 14822
Number of HSP's gapped (non-prelim): 461
length of query: 372
length of database: 191,569,459
effective HSP length: 119
effective length of query: 253
effective length of database: 127,355,155
effective search space: 32220854215
effective search space used: 32220854215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)