Query 017402
Match_columns 372
No_of_seqs 296 out of 2368
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:15:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 7.5E-29 1.6E-33 258.6 29.3 276 90-368 16-313 (2102)
2 KOG0166 Karyopherin (importin) 100.0 8.8E-29 1.9E-33 227.3 23.5 279 87-369 109-395 (514)
3 PLN03200 cellulose synthase-in 100.0 4.6E-28 1E-32 252.7 28.9 275 89-370 448-767 (2102)
4 KOG4224 Armadillo repeat prote 100.0 3.9E-28 8.5E-33 209.7 18.1 271 90-369 170-448 (550)
5 KOG4224 Armadillo repeat prote 100.0 2.6E-28 5.7E-33 210.8 16.4 260 102-367 139-405 (550)
6 COG5064 SRP1 Karyopherin (impo 99.9 1.1E-26 2.4E-31 199.1 18.4 283 83-369 110-400 (526)
7 KOG0166 Karyopherin (importin) 99.9 6.3E-25 1.4E-29 202.0 22.1 277 86-367 151-436 (514)
8 COG5064 SRP1 Karyopherin (impo 99.9 6.4E-23 1.4E-27 176.2 17.1 278 86-366 156-442 (526)
9 KOG1048 Neural adherens juncti 99.9 1E-21 2.2E-26 186.3 19.2 282 84-371 230-599 (717)
10 PF05804 KAP: Kinesin-associat 99.9 1.9E-20 4E-25 181.7 25.1 267 89-366 292-563 (708)
11 PF05804 KAP: Kinesin-associat 99.9 8.4E-20 1.8E-24 177.2 24.6 250 106-368 266-521 (708)
12 KOG4199 Uncharacterized conser 99.8 4.1E-19 8.8E-24 152.7 22.5 276 91-370 149-447 (461)
13 KOG4199 Uncharacterized conser 99.8 3E-17 6.5E-22 141.3 21.7 263 101-369 119-405 (461)
14 KOG2122 Beta-catenin-binding p 99.8 4.5E-18 9.8E-23 168.5 18.7 262 104-369 312-603 (2195)
15 KOG2122 Beta-catenin-binding p 99.7 1.5E-16 3.2E-21 158.0 15.7 277 90-367 238-559 (2195)
16 PF04564 U-box: U-box domain; 99.7 5.4E-18 1.2E-22 117.9 2.8 71 5-76 1-71 (73)
17 PF04826 Arm_2: Armadillo-like 99.7 3.2E-15 7E-20 129.4 18.8 225 127-358 8-253 (254)
18 PF04826 Arm_2: Armadillo-like 99.7 4E-15 8.6E-20 128.9 19.2 189 89-287 14-209 (254)
19 PF10508 Proteasom_PSMB: Prote 99.6 2.2E-13 4.8E-18 130.9 25.5 268 90-365 80-364 (503)
20 KOG1048 Neural adherens juncti 99.6 9.1E-14 2E-18 132.8 21.4 277 89-370 277-687 (717)
21 smart00504 Ubox Modified RING 99.6 6.9E-16 1.5E-20 105.0 5.0 63 8-72 1-63 (63)
22 KOG4500 Rho/Rac GTPase guanine 99.5 8.7E-13 1.9E-17 117.5 18.8 264 102-366 100-389 (604)
23 KOG1222 Kinesin associated pro 99.5 1.4E-12 3E-17 117.7 17.1 248 92-350 309-559 (791)
24 PF15227 zf-C3HC4_4: zinc fing 99.5 2E-14 4.3E-19 87.7 2.1 39 11-49 1-42 (42)
25 PF10508 Proteasom_PSMB: Prote 99.4 1.3E-10 2.8E-15 111.9 22.1 236 104-350 16-255 (503)
26 cd00020 ARM Armadillo/beta-cat 99.4 4.3E-12 9.2E-17 98.3 9.2 117 126-246 2-120 (120)
27 cd00020 ARM Armadillo/beta-cat 99.3 4.9E-11 1.1E-15 92.3 14.2 113 253-366 2-119 (120)
28 KOG4500 Rho/Rac GTPase guanine 99.3 2.9E-10 6.3E-15 101.7 19.8 272 91-365 227-517 (604)
29 PLN03208 E3 ubiquitin-protein 99.3 1.4E-12 3.1E-17 105.4 4.7 59 4-63 14-87 (193)
30 TIGR00599 rad18 DNA repair pro 99.3 2.8E-12 6.1E-17 116.5 5.9 71 3-75 21-91 (397)
31 PF03224 V-ATPase_H_N: V-ATPas 99.3 5.4E-10 1.2E-14 101.4 20.0 240 121-362 42-309 (312)
32 KOG0946 ER-Golgi vesicle-tethe 99.3 1.4E-09 3E-14 103.8 23.0 268 90-363 25-342 (970)
33 KOG1222 Kinesin associated pro 99.3 4.9E-10 1.1E-14 101.6 18.3 247 107-366 281-533 (791)
34 cd00256 VATPase_H VATPase_H, r 99.2 5.2E-09 1.1E-13 96.8 20.9 272 90-366 104-424 (429)
35 PRK09687 putative lyase; Provi 99.2 5E-09 1.1E-13 93.0 19.9 216 92-364 59-279 (280)
36 PF13923 zf-C3HC4_2: Zinc fing 99.2 1.5E-11 3.2E-16 74.3 2.1 38 11-49 1-39 (39)
37 PF03224 V-ATPase_H_N: V-ATPas 99.1 1.7E-09 3.7E-14 98.1 14.2 219 92-314 60-303 (312)
38 KOG0287 Postreplication repair 99.1 3.7E-11 8E-16 103.3 2.3 67 6-74 21-87 (442)
39 PRK09687 putative lyase; Provi 99.1 1.3E-08 2.8E-13 90.3 17.8 159 132-323 24-186 (280)
40 PF14835 zf-RING_6: zf-RING of 99.1 2.6E-11 5.5E-16 78.6 0.4 61 5-69 4-65 (65)
41 KOG2160 Armadillo/beta-catenin 99.1 1.5E-08 3.3E-13 89.5 17.8 187 93-283 87-282 (342)
42 PF00097 zf-C3HC4: Zinc finger 99.0 1.3E-10 2.9E-15 71.2 2.4 39 11-49 1-41 (41)
43 PF13445 zf-RING_UBOX: RING-ty 99.0 1.1E-10 2.4E-15 71.0 1.3 36 11-47 1-43 (43)
44 COG5432 RAD18 RING-finger-cont 99.0 3.4E-10 7.3E-15 95.4 3.6 66 7-74 24-89 (391)
45 PRK13800 putative oxidoreducta 99.0 1.5E-07 3.3E-12 97.2 23.4 186 134-363 687-895 (897)
46 PF13920 zf-C3HC4_3: Zinc fing 99.0 2.7E-10 5.9E-15 73.0 2.0 47 7-54 1-48 (50)
47 PHA02929 N1R/p28-like protein; 98.9 6.9E-10 1.5E-14 94.1 3.9 48 6-54 172-227 (238)
48 KOG0168 Putative ubiquitin fus 98.9 2.2E-07 4.8E-12 89.8 20.8 249 92-349 172-437 (1051)
49 KOG2160 Armadillo/beta-catenin 98.9 4.2E-08 9.1E-13 86.8 14.6 183 143-326 93-283 (342)
50 PF13639 zf-RING_2: Ring finge 98.9 3.4E-10 7.5E-15 70.4 1.0 40 10-50 2-44 (44)
51 PRK13800 putative oxidoreducta 98.9 1.8E-07 3.9E-12 96.6 20.6 219 90-366 624-866 (897)
52 KOG3678 SARM protein (with ste 98.9 5.3E-08 1.2E-12 88.3 14.0 260 91-369 184-454 (832)
53 KOG2759 Vacuolar H+-ATPase V1 98.9 7.1E-07 1.5E-11 80.3 20.9 268 90-366 117-437 (442)
54 cd00162 RING RING-finger (Real 98.9 2.2E-09 4.8E-14 67.2 3.8 43 10-52 1-44 (45)
55 KOG0317 Predicted E3 ubiquitin 98.9 1.5E-09 3.2E-14 92.3 3.6 51 6-58 237-287 (293)
56 KOG0823 Predicted E3 ubiquitin 98.9 9.7E-10 2.1E-14 90.6 2.4 56 7-63 46-103 (230)
57 KOG0320 Predicted E3 ubiquitin 98.9 2.1E-09 4.5E-14 84.6 3.9 51 7-59 130-182 (187)
58 PHA02926 zinc finger-like prot 98.8 3.4E-09 7.5E-14 86.6 3.9 51 4-54 166-230 (242)
59 KOG0168 Putative ubiquitin fus 98.8 5.7E-07 1.2E-11 87.1 18.8 229 133-368 169-414 (1051)
60 smart00184 RING Ring finger. E 98.8 9E-09 2E-13 62.2 4.0 39 11-49 1-39 (39)
61 KOG4646 Uncharacterized conser 98.7 6.6E-08 1.4E-12 73.2 8.6 130 90-224 19-149 (173)
62 KOG2973 Uncharacterized conser 98.7 1.4E-06 3E-11 75.3 17.4 268 90-367 6-315 (353)
63 cd00256 VATPase_H VATPase_H, r 98.7 5.8E-06 1.3E-10 76.9 22.8 235 131-367 53-308 (429)
64 KOG2177 Predicted E3 ubiquitin 98.7 8.5E-09 1.9E-13 95.0 4.3 70 4-77 9-78 (386)
65 PF14634 zf-RING_5: zinc-RING 98.7 1.9E-08 4.1E-13 62.3 3.6 41 10-51 1-44 (44)
66 KOG0311 Predicted E3 ubiquitin 98.6 6.5E-09 1.4E-13 90.6 0.8 70 5-74 40-110 (381)
67 TIGR00570 cdk7 CDK-activating 98.6 4.5E-08 9.7E-13 85.6 5.6 62 7-69 2-72 (309)
68 PF11789 zf-Nse: Zinc-finger o 98.6 1E-08 2.2E-13 66.7 0.7 43 7-49 10-54 (57)
69 KOG4646 Uncharacterized conser 98.6 9.2E-07 2E-11 67.1 11.0 150 215-365 15-168 (173)
70 PF01602 Adaptin_N: Adaptin N 98.6 1.2E-05 2.5E-10 78.8 22.3 238 101-367 91-333 (526)
71 KOG0946 ER-Golgi vesicle-tethe 98.6 9.3E-06 2E-10 78.4 19.7 273 90-365 64-397 (970)
72 PF05536 Neurochondrin: Neuroc 98.5 1.2E-05 2.5E-10 78.1 19.4 231 132-366 6-260 (543)
73 COG5574 PEX10 RING-finger-cont 98.5 6E-08 1.3E-12 81.5 2.7 49 6-54 213-262 (271)
74 PF14664 RICTOR_N: Rapamycin-i 98.5 5.1E-05 1.1E-09 70.0 22.0 266 92-365 30-362 (371)
75 KOG2660 Locus-specific chromos 98.5 1.1E-07 2.4E-12 82.6 3.9 67 5-72 12-82 (331)
76 PF12678 zf-rbx1: RING-H2 zinc 98.5 1.1E-07 2.4E-12 65.9 2.9 40 10-50 21-73 (73)
77 KOG2164 Predicted E3 ubiquitin 98.4 9.3E-08 2E-12 87.8 2.6 53 8-61 186-242 (513)
78 PF01602 Adaptin_N: Adaptin N 98.4 1.1E-05 2.5E-10 78.9 17.4 250 89-368 44-297 (526)
79 KOG0978 E3 ubiquitin ligase in 98.4 1.1E-07 2.4E-12 91.6 2.4 54 6-60 641-694 (698)
80 PF14664 RICTOR_N: Rapamycin-i 98.4 2.8E-05 6.1E-10 71.7 17.9 247 111-365 5-267 (371)
81 KOG2734 Uncharacterized conser 98.4 0.00021 4.6E-09 65.0 22.1 234 108-347 103-370 (536)
82 KOG1293 Proteins containing ar 98.4 9.9E-06 2.1E-10 76.8 14.1 155 100-257 388-545 (678)
83 KOG1293 Proteins containing ar 98.4 7E-05 1.5E-09 71.3 19.4 279 85-367 49-490 (678)
84 KOG2023 Nuclear transport rece 98.3 9.4E-06 2E-10 77.0 13.0 268 90-369 131-465 (885)
85 KOG2171 Karyopherin (importin) 98.3 0.00013 2.7E-09 73.8 21.1 244 100-351 260-529 (1075)
86 KOG2973 Uncharacterized conser 98.3 3.4E-05 7.3E-10 67.0 14.8 195 134-337 6-215 (353)
87 KOG2171 Karyopherin (importin) 98.3 3.5E-05 7.7E-10 77.6 16.5 225 94-325 355-594 (1075)
88 COG5222 Uncharacterized conser 98.3 9.1E-07 2E-11 75.3 4.7 67 9-75 275-342 (427)
89 KOG0297 TNF receptor-associate 98.3 6.7E-07 1.5E-11 83.0 3.7 70 3-74 16-87 (391)
90 PTZ00429 beta-adaptin; Provisi 98.2 0.00048 1E-08 69.1 23.2 248 90-365 71-324 (746)
91 PF05536 Neurochondrin: Neuroc 98.2 9.1E-05 2E-09 72.0 17.4 155 90-249 8-171 (543)
92 KOG4628 Predicted E3 ubiquitin 98.2 1.1E-06 2.5E-11 78.2 2.9 46 9-54 230-278 (348)
93 PF00514 Arm: Armadillo/beta-c 98.1 8E-06 1.7E-10 49.7 5.5 41 327-367 1-41 (41)
94 KOG4413 26S proteasome regulat 98.1 0.00031 6.6E-09 61.7 17.0 262 102-366 95-376 (524)
95 KOG1789 Endocytosis protein RM 98.1 0.0013 2.8E-08 66.2 22.6 257 86-349 1770-2141(2235)
96 PF00514 Arm: Armadillo/beta-c 98.1 2.9E-06 6.3E-11 51.7 3.1 40 120-161 1-40 (41)
97 KOG3678 SARM protein (with ste 98.1 4.2E-05 9.1E-10 70.0 11.5 175 168-347 174-360 (832)
98 PF12861 zf-Apc11: Anaphase-pr 98.1 5.8E-06 1.3E-10 57.7 4.3 44 11-54 35-82 (85)
99 PF10165 Ric8: Guanine nucleot 98.0 0.0006 1.3E-08 64.9 19.0 226 101-327 44-339 (446)
100 KOG2759 Vacuolar H+-ATPase V1 98.0 0.0012 2.6E-08 60.0 19.3 236 132-369 66-323 (442)
101 PF13646 HEAT_2: HEAT repeats; 98.0 4E-05 8.6E-10 55.4 8.3 88 133-242 1-88 (88)
102 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.001 2.3E-08 58.2 17.8 222 145-366 161-427 (432)
103 KOG1789 Endocytosis protein RM 98.0 0.00091 2E-08 67.1 19.0 141 105-248 1741-1885(2235)
104 PTZ00429 beta-adaptin; Provisi 98.0 0.0034 7.5E-08 63.1 23.4 249 86-366 31-284 (746)
105 COG5243 HRD1 HRD ubiquitin lig 98.0 4.1E-06 8.9E-11 73.7 2.5 47 7-54 286-345 (491)
106 COG5369 Uncharacterized conser 98.0 1.8E-05 3.8E-10 73.5 6.7 269 90-366 434-740 (743)
107 KOG0824 Predicted E3 ubiquitin 98.0 4.4E-06 9.6E-11 71.6 2.6 46 9-54 8-53 (324)
108 COG5152 Uncharacterized conser 98.0 5.4E-06 1.2E-10 66.4 2.8 46 8-54 196-241 (259)
109 KOG2879 Predicted E3 ubiquitin 97.9 6.7E-06 1.5E-10 69.6 3.4 50 5-54 236-287 (298)
110 KOG4159 Predicted E3 ubiquitin 97.9 5.1E-06 1.1E-10 76.1 2.9 70 5-75 81-154 (398)
111 TIGR02270 conserved hypothetic 97.9 0.0028 6.2E-08 59.3 20.5 56 297-367 241-296 (410)
112 KOG1002 Nucleotide excision re 97.9 2.5E-05 5.5E-10 71.9 6.0 178 6-206 534-739 (791)
113 KOG1813 Predicted E3 ubiquitin 97.8 7.4E-06 1.6E-10 70.1 1.6 57 8-67 241-297 (313)
114 COG5240 SEC21 Vesicle coat com 97.8 0.0032 6.8E-08 59.5 18.6 255 92-368 269-556 (898)
115 KOG0802 E3 ubiquitin ligase [P 97.8 1.1E-05 2.3E-10 78.8 2.0 46 8-54 291-341 (543)
116 KOG2023 Nuclear transport rece 97.7 0.001 2.2E-08 63.7 14.3 271 89-368 176-506 (885)
117 PF10165 Ric8: Guanine nucleot 97.7 0.0018 3.9E-08 61.7 16.3 257 110-367 2-337 (446)
118 KOG4413 26S proteasome regulat 97.6 0.014 3.1E-07 51.6 18.3 244 103-349 185-463 (524)
119 PF12348 CLASP_N: CLASP N term 97.6 0.00039 8.6E-09 60.1 8.5 200 92-334 8-215 (228)
120 KOG4172 Predicted E3 ubiquitin 97.5 2.2E-05 4.8E-10 48.8 0.4 46 9-54 8-54 (62)
121 smart00185 ARM Armadillo/beta- 97.5 0.00019 4.1E-09 43.4 4.4 39 122-162 3-41 (41)
122 PF13646 HEAT_2: HEAT repeats; 97.5 0.00082 1.8E-08 48.4 8.4 81 176-278 1-87 (88)
123 PF04063 DUF383: Domain of unk 97.5 0.0016 3.4E-08 54.2 11.0 116 232-348 10-157 (192)
124 KOG1241 Karyopherin (importin) 97.5 0.004 8.7E-08 60.6 14.9 269 90-368 128-436 (859)
125 TIGR02270 conserved hypothetic 97.5 0.034 7.4E-07 52.2 20.8 176 133-367 88-267 (410)
126 KOG4367 Predicted Zn-finger pr 97.5 5E-05 1.1E-09 68.3 1.9 36 5-40 1-36 (699)
127 KOG1242 Protein containing ada 97.5 0.01 2.2E-07 56.7 17.2 227 102-349 229-464 (569)
128 PF12348 CLASP_N: CLASP N term 97.5 0.00089 1.9E-08 57.9 9.6 176 185-367 18-206 (228)
129 KOG4642 Chaperone-dependent E3 97.5 0.00011 2.4E-09 61.7 3.5 73 4-77 207-279 (284)
130 KOG0212 Uncharacterized conser 97.4 0.013 2.9E-07 55.3 17.1 235 86-327 162-408 (675)
131 KOG2734 Uncharacterized conser 97.4 0.013 2.8E-07 53.8 16.4 210 151-364 102-343 (536)
132 smart00185 ARM Armadillo/beta- 97.4 0.0004 8.7E-09 41.9 4.9 39 328-366 2-40 (41)
133 KOG0804 Cytoplasmic Zn-finger 97.4 5.8E-05 1.3E-09 68.4 1.1 46 6-54 173-222 (493)
134 COG5369 Uncharacterized conser 97.4 0.0014 3.1E-08 61.3 10.0 196 106-305 406-617 (743)
135 COG1413 FOG: HEAT repeat [Ener 97.3 0.024 5.2E-07 52.1 17.7 190 131-365 43-240 (335)
136 KOG1734 Predicted RING-contain 97.3 5.7E-05 1.2E-09 63.7 -0.1 55 7-62 223-288 (328)
137 PF09759 Atx10homo_assoc: Spin 97.3 0.00043 9.4E-09 50.8 4.5 66 106-171 3-69 (102)
138 KOG2259 Uncharacterized conser 97.3 0.0014 3.1E-08 62.7 8.9 242 102-368 211-476 (823)
139 PF11841 DUF3361: Domain of un 97.3 0.0036 7.8E-08 49.9 9.8 123 123-246 3-131 (160)
140 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00048 1.1E-08 44.8 4.2 55 188-244 1-55 (55)
141 PF04078 Rcd1: Cell differenti 97.3 0.023 5E-07 49.0 15.3 218 145-366 7-261 (262)
142 KOG1241 Karyopherin (importin) 97.2 0.013 2.7E-07 57.3 14.9 260 96-367 181-477 (859)
143 PF13513 HEAT_EZ: HEAT-like re 97.2 0.001 2.2E-08 43.2 5.6 55 310-365 1-55 (55)
144 KOG3800 Predicted E3 ubiquitin 97.2 0.00031 6.8E-09 60.3 3.8 50 10-60 2-56 (300)
145 KOG1517 Guanine nucleotide bin 97.2 0.027 5.8E-07 57.1 17.3 231 90-327 475-734 (1387)
146 KOG3036 Protein involved in ce 97.2 0.047 1E-06 46.4 16.0 175 192-367 97-291 (293)
147 KOG1242 Protein containing ada 97.1 0.016 3.4E-07 55.4 14.4 163 187-363 267-440 (569)
148 COG5194 APC11 Component of SCF 97.1 0.00059 1.3E-08 46.3 3.6 44 10-54 33-81 (88)
149 KOG1824 TATA-binding protein-i 97.1 0.039 8.5E-07 55.4 17.3 172 91-270 572-746 (1233)
150 KOG0213 Splicing factor 3b, su 97.1 0.0094 2E-07 58.1 12.6 147 216-366 799-953 (1172)
151 KOG1493 Anaphase-promoting com 97.1 0.00035 7.7E-09 46.9 2.1 49 6-54 29-81 (84)
152 KOG1039 Predicted E3 ubiquitin 97.1 0.00042 9E-09 62.5 3.3 50 5-54 158-221 (344)
153 KOG2259 Uncharacterized conser 97.1 0.0016 3.4E-08 62.4 7.1 184 175-371 235-443 (823)
154 PF07814 WAPL: Wings apart-lik 97.1 0.025 5.5E-07 52.4 14.9 240 90-339 24-313 (361)
155 PF14570 zf-RING_4: RING/Ubox 97.0 0.00045 9.7E-09 42.7 2.0 43 11-53 1-47 (48)
156 PF11793 FANCL_C: FANCL C-term 97.0 0.0001 2.3E-09 50.4 -1.1 47 8-54 2-66 (70)
157 KOG1248 Uncharacterized conser 96.9 0.11 2.4E-06 53.6 19.0 215 144-366 665-897 (1176)
158 PF11841 DUF3361: Domain of un 96.9 0.032 6.9E-07 44.5 12.2 114 169-283 6-131 (160)
159 KOG0212 Uncharacterized conser 96.9 0.039 8.5E-07 52.3 14.5 231 131-368 167-407 (675)
160 KOG0826 Predicted E3 ubiquitin 96.9 0.00053 1.1E-08 59.9 2.2 48 6-54 298-346 (357)
161 smart00744 RINGv The RING-vari 96.8 0.0021 4.6E-08 40.5 4.1 41 10-50 1-49 (49)
162 COG1413 FOG: HEAT repeat [Ener 96.8 0.23 5E-06 45.6 19.5 90 88-202 44-134 (335)
163 PF09759 Atx10homo_assoc: Spin 96.8 0.0092 2E-07 43.9 8.0 65 272-337 4-71 (102)
164 KOG3036 Protein involved in ce 96.8 0.015 3.2E-07 49.4 10.1 149 106-255 96-256 (293)
165 KOG3039 Uncharacterized conser 96.7 0.00099 2.1E-08 55.7 2.5 53 7-61 220-276 (303)
166 KOG1062 Vesicle coat complex A 96.7 0.52 1.1E-05 46.9 21.0 216 145-367 246-544 (866)
167 PF04078 Rcd1: Cell differenti 96.7 0.016 3.6E-07 49.9 9.8 150 106-256 67-228 (262)
168 KOG1059 Vesicle coat complex A 96.7 0.22 4.9E-06 48.8 17.9 200 86-307 180-424 (877)
169 KOG4151 Myosin assembly protei 96.7 0.043 9.3E-07 54.1 13.4 195 162-362 492-694 (748)
170 KOG1059 Vesicle coat complex A 96.7 0.11 2.4E-06 50.7 15.9 205 134-363 147-361 (877)
171 PF04641 Rtf2: Rtf2 RING-finge 96.6 0.0013 2.9E-08 57.9 2.8 52 5-59 110-165 (260)
172 COG5175 MOT2 Transcriptional r 96.6 0.0015 3.3E-08 57.1 2.9 48 7-54 13-64 (480)
173 KOG1517 Guanine nucleotide bin 96.6 0.038 8.3E-07 56.0 12.4 172 195-369 488-673 (1387)
174 KOG0827 Predicted E3 ubiquitin 96.5 0.0022 4.7E-08 57.4 3.5 47 8-54 4-56 (465)
175 PF12717 Cnd1: non-SMC mitotic 96.5 0.095 2.1E-06 43.4 13.1 111 102-227 1-112 (178)
176 PF11698 V-ATPase_H_C: V-ATPas 96.5 0.011 2.5E-07 44.6 6.7 69 297-365 44-113 (119)
177 KOG1061 Vesicle coat complex A 96.5 0.034 7.3E-07 54.6 11.5 240 90-351 52-293 (734)
178 KOG0289 mRNA splicing factor [ 96.5 0.018 3.9E-07 52.5 8.9 49 9-59 1-50 (506)
179 KOG1061 Vesicle coat complex A 96.5 0.028 6.1E-07 55.2 10.8 69 90-165 124-192 (734)
180 PF13764 E3_UbLigase_R4: E3 ub 96.4 0.69 1.5E-05 47.1 20.6 230 92-326 122-407 (802)
181 KOG1785 Tyrosine kinase negati 96.4 0.0012 2.6E-08 59.0 1.1 45 10-54 371-416 (563)
182 KOG0825 PHD Zn-finger protein 96.4 0.00062 1.3E-08 66.0 -0.9 46 8-54 123-171 (1134)
183 PF12755 Vac14_Fab1_bd: Vacuol 96.4 0.044 9.5E-07 40.2 8.9 69 296-367 27-97 (97)
184 KOG4151 Myosin assembly protei 96.4 0.13 2.9E-06 50.8 14.6 237 123-369 496-743 (748)
185 KOG1645 RING-finger-containing 96.3 0.0017 3.6E-08 58.5 1.6 58 8-66 4-67 (463)
186 COG5215 KAP95 Karyopherin (imp 96.3 0.2 4.2E-06 47.9 15.0 248 101-363 17-288 (858)
187 KOG0213 Splicing factor 3b, su 96.3 0.16 3.5E-06 50.0 14.6 147 92-246 804-954 (1172)
188 KOG1078 Vesicle coat complex C 96.3 0.68 1.5E-05 46.0 18.9 246 94-366 252-531 (865)
189 PF08045 CDC14: Cell division 96.3 0.02 4.4E-07 49.6 8.0 101 104-205 106-209 (257)
190 PF04063 DUF383: Domain of unk 96.3 0.034 7.5E-07 46.3 8.8 119 187-305 8-156 (192)
191 COG5181 HSH155 U2 snRNP splice 96.2 0.26 5.7E-06 47.5 15.4 147 91-246 608-759 (975)
192 PF13764 E3_UbLigase_R4: E3 ub 96.2 0.82 1.8E-05 46.6 19.8 241 125-369 111-408 (802)
193 COG5096 Vesicle coat complex, 96.2 0.091 2E-06 52.5 12.8 139 90-247 58-196 (757)
194 PF05290 Baculo_IE-1: Baculovi 96.1 0.0075 1.6E-07 45.7 3.9 48 7-54 79-132 (140)
195 KOG1077 Vesicle coat complex A 96.1 0.8 1.7E-05 45.0 18.2 245 90-357 149-423 (938)
196 PF08569 Mo25: Mo25-like; Int 96.1 0.36 7.8E-06 44.1 15.4 197 169-369 71-285 (335)
197 PF05004 IFRD: Interferon-rela 96.0 0.61 1.3E-05 42.2 16.5 186 176-367 45-257 (309)
198 COG5215 KAP95 Karyopherin (imp 96.0 0.84 1.8E-05 43.8 17.5 270 89-369 131-439 (858)
199 KOG2611 Neurochondrin/leucine- 96.0 0.72 1.6E-05 43.3 16.6 180 136-323 16-223 (698)
200 KOG2999 Regulator of Rac1, req 96.0 0.31 6.7E-06 46.4 14.4 152 90-246 86-242 (713)
201 KOG2817 Predicted E3 ubiquitin 96.0 0.0043 9.4E-08 56.0 2.4 46 6-51 332-382 (394)
202 KOG1824 TATA-binding protein-i 95.9 0.59 1.3E-05 47.4 16.7 215 91-332 821-1043(1233)
203 KOG3039 Uncharacterized conser 95.9 0.0047 1E-07 51.7 2.0 37 4-40 39-75 (303)
204 KOG4265 Predicted E3 ubiquitin 95.8 0.0048 1E-07 55.0 2.0 46 8-54 290-336 (349)
205 PF14447 Prok-RING_4: Prokaryo 95.8 0.0037 8E-08 39.6 0.8 46 6-54 5-50 (55)
206 PF02891 zf-MIZ: MIZ/SP-RING z 95.7 0.008 1.7E-07 38.0 2.2 45 8-52 2-50 (50)
207 KOG1062 Vesicle coat complex A 95.7 0.59 1.3E-05 46.5 15.6 124 222-357 258-404 (866)
208 COG5220 TFB3 Cdk activating ki 95.7 0.0041 9E-08 51.8 1.0 47 8-54 10-64 (314)
209 KOG2930 SCF ubiquitin ligase, 95.7 0.011 2.4E-07 42.4 2.8 27 25-52 80-106 (114)
210 KOG2042 Ubiquitin fusion degra 95.6 0.016 3.5E-07 58.6 5.0 71 4-76 866-937 (943)
211 KOG3161 Predicted E3 ubiquitin 95.6 0.0035 7.6E-08 59.6 0.4 42 3-47 6-51 (861)
212 KOG1077 Vesicle coat complex A 95.6 1.6 3.6E-05 43.0 17.8 242 106-367 128-398 (938)
213 PF12717 Cnd1: non-SMC mitotic 95.5 0.66 1.4E-05 38.3 13.6 93 146-247 1-93 (178)
214 PF14668 RICTOR_V: Rapamycin-i 95.5 0.1 2.2E-06 35.8 7.1 60 234-293 4-68 (73)
215 PF08569 Mo25: Mo25-like; Int 95.5 0.24 5.1E-06 45.3 11.4 183 90-285 124-313 (335)
216 PF12755 Vac14_Fab1_bd: Vacuol 95.4 0.038 8.1E-07 40.6 5.2 90 106-201 3-94 (97)
217 PF06371 Drf_GBD: Diaphanous G 95.3 0.084 1.8E-06 43.9 7.8 107 216-325 66-187 (187)
218 KOG1788 Uncharacterized conser 95.3 0.74 1.6E-05 47.3 14.9 246 111-365 664-980 (2799)
219 PF05004 IFRD: Interferon-rela 95.3 0.94 2E-05 41.0 14.8 174 144-324 54-256 (309)
220 KOG4692 Predicted E3 ubiquitin 95.2 0.011 2.3E-07 52.3 2.0 48 6-54 420-467 (489)
221 PF08045 CDC14: Cell division 95.2 0.22 4.8E-06 43.3 9.9 89 274-363 111-203 (257)
222 PF11701 UNC45-central: Myosin 95.2 0.23 4.9E-06 40.1 9.5 144 92-243 8-156 (157)
223 COG5181 HSH155 U2 snRNP splice 95.1 0.83 1.8E-05 44.3 14.1 92 130-230 687-779 (975)
224 PF11698 V-ATPase_H_C: V-ATPas 95.1 0.038 8.2E-07 41.8 4.3 67 91-160 47-113 (119)
225 PF14668 RICTOR_V: Rapamycin-i 95.1 0.087 1.9E-06 36.2 5.6 67 191-258 4-70 (73)
226 KOG2999 Regulator of Rac1, req 95.0 0.49 1.1E-05 45.1 12.2 148 217-366 84-241 (713)
227 KOG4653 Uncharacterized conser 95.0 0.67 1.4E-05 46.6 13.4 210 144-365 738-962 (982)
228 PF02985 HEAT: HEAT repeat; I 94.9 0.055 1.2E-06 30.3 3.7 29 339-367 1-29 (31)
229 PF06025 DUF913: Domain of Unk 94.9 3.3 7.1E-05 38.7 20.7 219 108-347 3-253 (379)
230 COG5240 SEC21 Vesicle coat com 94.9 3.9 8.5E-05 39.6 18.1 210 144-366 275-515 (898)
231 KOG1001 Helicase-like transcri 94.8 0.015 3.3E-07 57.8 1.9 45 9-54 455-500 (674)
232 COG5209 RCD1 Uncharacterized p 94.7 0.63 1.4E-05 39.2 10.8 143 192-336 118-278 (315)
233 KOG4535 HEAT and armadillo rep 94.6 0.98 2.1E-05 42.5 12.9 262 102-370 268-562 (728)
234 PF11701 UNC45-central: Myosin 94.6 0.28 6.2E-06 39.6 8.7 141 175-322 4-156 (157)
235 COG5231 VMA13 Vacuolar H+-ATPa 94.6 1.1 2.5E-05 39.8 12.7 219 103-324 163-427 (432)
236 KOG4362 Transcriptional regula 94.6 0.015 3.3E-07 56.7 1.5 68 6-74 19-88 (684)
237 PF06371 Drf_GBD: Diaphanous G 94.6 0.17 3.6E-06 42.1 7.6 109 90-202 69-186 (187)
238 KOG4185 Predicted E3 ubiquitin 94.5 0.049 1.1E-06 49.1 4.4 64 9-72 4-77 (296)
239 KOG2114 Vacuolar assembly/sort 94.4 0.025 5.4E-07 56.0 2.4 42 8-53 840-882 (933)
240 KOG1060 Vesicle coat complex A 94.3 6.5 0.00014 39.6 20.0 55 182-245 295-349 (968)
241 PF02985 HEAT: HEAT repeat; I 94.2 0.076 1.6E-06 29.7 3.1 28 176-203 2-29 (31)
242 PF12031 DUF3518: Domain of un 94.1 0.18 3.9E-06 43.0 6.4 85 271-355 141-233 (257)
243 KOG1991 Nuclear transport rece 94.0 1.4 3E-05 45.0 13.4 249 108-365 391-669 (1010)
244 PF12460 MMS19_C: RNAPII trans 94.0 2.8 6E-05 39.8 15.2 183 175-368 190-395 (415)
245 KOG1941 Acetylcholine receptor 93.9 0.034 7.4E-07 50.0 2.1 44 8-51 365-413 (518)
246 COG5209 RCD1 Uncharacterized p 93.9 0.12 2.5E-06 43.5 5.0 149 106-255 117-277 (315)
247 KOG3002 Zn finger protein [Gen 93.9 0.05 1.1E-06 48.5 3.0 61 6-74 46-107 (299)
248 PF07800 DUF1644: Protein of u 93.8 0.06 1.3E-06 42.4 2.9 34 7-40 1-47 (162)
249 KOG3113 Uncharacterized conser 93.7 0.044 9.6E-07 46.3 2.3 54 6-62 109-166 (293)
250 COG5096 Vesicle coat complex, 93.7 4.4 9.5E-05 41.0 16.3 163 183-367 28-195 (757)
251 KOG4535 HEAT and armadillo rep 93.7 0.15 3.2E-06 47.7 5.7 213 145-364 361-600 (728)
252 KOG1058 Vesicle coat complex C 93.6 2.2 4.8E-05 42.4 13.6 29 87-115 170-198 (948)
253 COG5113 UFD2 Ubiquitin fusion 93.6 0.13 2.9E-06 49.4 5.4 71 4-76 850-921 (929)
254 KOG1991 Nuclear transport rece 93.5 5.5 0.00012 41.0 16.5 254 101-363 430-707 (1010)
255 PF12031 DUF3518: Domain of un 93.4 0.8 1.7E-05 39.2 9.1 83 188-270 138-228 (257)
256 KOG0567 HEAT repeat-containing 93.3 5.1 0.00011 34.9 18.5 196 129-366 65-279 (289)
257 KOG2611 Neurochondrin/leucine- 93.3 1.6 3.5E-05 41.1 11.6 124 220-348 15-162 (698)
258 PF12719 Cnd3: Nuclear condens 93.2 2.1 4.5E-05 38.6 12.4 164 132-307 27-208 (298)
259 PHA02825 LAP/PHD finger-like p 93.1 0.11 2.4E-06 41.0 3.5 53 1-54 1-59 (162)
260 KOG1814 Predicted E3 ubiquitin 93.1 0.15 3.3E-06 46.4 4.7 45 7-51 183-237 (445)
261 PF12719 Cnd3: Nuclear condens 93.0 6.6 0.00014 35.4 17.6 156 101-267 39-206 (298)
262 KOG2979 Protein involved in DN 93.0 0.12 2.6E-06 44.1 3.8 44 8-51 176-221 (262)
263 KOG2025 Chromosome condensatio 92.9 7.1 0.00015 38.8 15.7 115 132-256 86-200 (892)
264 PF14569 zf-UDP: Zinc-binding 92.9 0.12 2.5E-06 35.3 2.8 47 8-54 9-62 (80)
265 KOG1060 Vesicle coat complex A 92.8 11 0.00023 38.1 16.9 149 86-256 34-183 (968)
266 KOG1240 Protein kinase contain 92.8 1.2 2.7E-05 46.5 11.1 108 133-246 424-537 (1431)
267 PF05918 API5: Apoptosis inhib 92.8 3.3 7.1E-05 40.4 13.4 119 185-322 33-159 (556)
268 KOG2025 Chromosome condensatio 92.4 4.3 9.2E-05 40.3 13.6 115 173-293 84-200 (892)
269 KOG2274 Predicted importin 9 [ 92.3 11 0.00023 38.7 16.4 219 102-328 463-692 (1005)
270 KOG1240 Protein kinase contain 91.9 17 0.00038 38.5 17.7 248 102-365 436-723 (1431)
271 PF08746 zf-RING-like: RING-li 91.9 0.13 2.9E-06 31.3 2.0 39 11-49 1-43 (43)
272 PF12460 MMS19_C: RNAPII trans 91.9 10 0.00022 36.0 15.8 204 133-345 191-413 (415)
273 KOG2274 Predicted importin 9 [ 91.6 4.6 0.0001 41.1 13.1 212 145-368 462-690 (1005)
274 COG5109 Uncharacterized conser 91.5 0.12 2.6E-06 45.2 2.0 48 5-52 333-385 (396)
275 KOG1943 Beta-tubulin folding c 91.4 10 0.00022 39.6 15.4 189 174-368 341-574 (1133)
276 smart00638 LPD_N Lipoprotein N 91.2 7.4 0.00016 38.7 14.7 226 106-364 287-542 (574)
277 KOG1058 Vesicle coat complex C 91.2 5.4 0.00012 39.9 12.8 208 104-332 221-470 (948)
278 PF10367 Vps39_2: Vacuolar sor 91.1 0.06 1.3E-06 40.4 -0.1 32 5-36 75-108 (109)
279 KOG4653 Uncharacterized conser 91.0 4.2 9.1E-05 41.2 12.1 179 176-368 729-919 (982)
280 COG5098 Chromosome condensatio 90.9 1.7 3.6E-05 42.9 9.1 151 214-369 238-418 (1128)
281 PF07814 WAPL: Wings apart-lik 90.6 12 0.00026 34.8 14.5 228 133-369 23-301 (361)
282 PHA03096 p28-like protein; Pro 90.5 0.18 4E-06 44.6 2.3 43 9-51 179-231 (284)
283 PHA02862 5L protein; Provision 90.5 0.24 5.2E-06 38.3 2.6 45 9-54 3-53 (156)
284 KOG0301 Phospholipase A2-activ 90.2 11 0.00023 37.3 13.7 164 102-269 557-727 (745)
285 KOG3665 ZYG-1-like serine/thre 90.1 2.9 6.4E-05 42.4 10.6 93 112-205 494-589 (699)
286 COG5236 Uncharacterized conser 90.0 0.27 5.9E-06 43.6 2.9 49 6-54 59-108 (493)
287 KOG0567 HEAT repeat-containing 89.8 13 0.00028 32.5 15.8 191 89-325 69-280 (289)
288 KOG0211 Protein phosphatase 2A 89.7 23 0.00051 36.2 16.4 251 102-366 368-624 (759)
289 KOG1940 Zn-finger protein [Gen 89.7 0.22 4.8E-06 43.6 2.1 43 8-51 158-204 (276)
290 PF08324 PUL: PUL domain; Int 89.3 2.4 5.2E-05 37.5 8.5 153 104-257 78-242 (268)
291 PF05918 API5: Apoptosis inhib 89.2 9 0.00019 37.5 12.6 98 94-203 27-125 (556)
292 cd03568 VHS_STAM VHS domain fa 89.0 2.4 5.1E-05 33.6 7.4 70 297-366 38-109 (144)
293 PF14500 MMS19_N: Dos2-interac 89.0 16 0.00034 32.3 17.0 207 95-325 7-237 (262)
294 KOG4739 Uncharacterized protei 88.8 0.17 3.7E-06 43.0 0.8 60 10-75 5-66 (233)
295 PF06025 DUF913: Domain of Unk 88.8 11 0.00023 35.4 12.6 102 169-270 100-208 (379)
296 KOG3970 Predicted E3 ubiquitin 88.4 1.2 2.7E-05 37.1 5.4 47 8-54 50-105 (299)
297 PF05605 zf-Di19: Drought indu 88.4 0.33 7.1E-06 31.2 1.8 39 7-52 1-40 (54)
298 KOG1943 Beta-tubulin folding c 88.4 7.2 0.00016 40.6 11.7 144 216-365 341-498 (1133)
299 COG5656 SXM1 Importin, protein 88.3 30 0.00066 34.9 15.4 253 106-366 433-710 (970)
300 KOG2956 CLIP-associating prote 88.3 20 0.00043 34.0 13.6 169 188-366 301-476 (516)
301 KOG0298 DEAD box-containing he 88.1 0.25 5.4E-06 51.6 1.5 47 7-54 1152-1199(1394)
302 KOG4464 Signaling protein RIC- 88.1 19 0.0004 33.6 13.0 268 92-363 50-383 (532)
303 KOG1248 Uncharacterized conser 87.9 24 0.00052 37.3 15.2 213 100-325 665-898 (1176)
304 cd03561 VHS VHS domain family; 87.9 3.6 7.8E-05 32.1 7.7 70 297-366 38-111 (133)
305 KOG0211 Protein phosphatase 2A 87.7 11 0.00023 38.6 12.6 165 92-267 241-407 (759)
306 KOG1812 Predicted E3 ubiquitin 87.6 0.32 6.9E-06 45.4 1.9 47 8-54 146-203 (384)
307 cd03572 ENTH_epsin_related ENT 87.5 4.3 9.3E-05 31.1 7.6 72 297-368 39-120 (122)
308 cd03569 VHS_Hrs_Vps27p VHS dom 87.3 4 8.7E-05 32.3 7.7 71 296-366 41-113 (142)
309 PF12530 DUF3730: Protein of u 87.0 19 0.00042 31.1 14.5 136 91-245 4-150 (234)
310 PF14225 MOR2-PAG1_C: Cell mor 86.7 20 0.00043 31.6 12.4 178 88-283 61-254 (262)
311 KOG0915 Uncharacterized conser 86.6 27 0.00059 38.1 14.9 253 101-367 1143-1427(1702)
312 KOG3665 ZYG-1-like serine/thre 86.6 21 0.00045 36.4 14.0 193 156-364 494-694 (699)
313 KOG1243 Protein kinase [Genera 86.2 39 0.00084 33.8 15.0 237 102-365 267-513 (690)
314 PLN02189 cellulose synthase 86.1 0.43 9.3E-06 49.3 2.0 46 9-54 35-87 (1040)
315 KOG1820 Microtubule-associated 85.9 30 0.00065 35.8 14.7 184 173-364 248-440 (815)
316 PF14446 Prok-RING_1: Prokaryo 85.6 0.7 1.5E-05 29.4 2.0 30 8-37 5-38 (54)
317 KOG1020 Sister chromatid cohes 85.6 16 0.00035 39.7 12.8 162 192-366 795-959 (1692)
318 PF08167 RIX1: rRNA processing 85.5 4.6 0.0001 32.8 7.4 74 174-247 25-98 (165)
319 PLN02436 cellulose synthase A 85.4 0.48 1E-05 49.0 1.9 46 9-54 37-89 (1094)
320 cd03567 VHS_GGA VHS domain fam 85.2 5.6 0.00012 31.3 7.4 70 297-366 39-115 (139)
321 PF08506 Cse1: Cse1; InterPro 85.2 17 0.00038 33.8 11.9 236 104-362 111-370 (370)
322 PLN02638 cellulose synthase A 85.0 0.52 1.1E-05 48.9 2.0 46 9-54 18-70 (1079)
323 COG3813 Uncharacterized protei 84.8 1.1 2.3E-05 30.1 2.7 44 20-67 21-64 (84)
324 smart00288 VHS Domain present 84.2 7.3 0.00016 30.4 7.7 69 297-365 38-109 (133)
325 PLN02195 cellulose synthase A 83.8 0.76 1.6E-05 47.3 2.5 45 10-54 8-59 (977)
326 PF11864 DUF3384: Domain of un 83.7 44 0.00095 32.3 19.4 88 89-184 29-117 (464)
327 COG5627 MMS21 DNA repair prote 83.6 0.77 1.7E-05 38.6 2.0 59 8-67 189-251 (275)
328 KOG3899 Uncharacterized conser 83.4 0.83 1.8E-05 39.7 2.2 29 26-54 325-365 (381)
329 PF12906 RINGv: RING-variant d 83.4 0.48 1E-05 29.4 0.6 39 11-49 1-47 (47)
330 PF01347 Vitellogenin_N: Lipop 83.3 7.8 0.00017 38.9 9.5 164 174-363 395-585 (618)
331 COG5218 YCG1 Chromosome conden 83.1 11 0.00024 36.8 9.5 147 97-255 58-205 (885)
332 KOG1832 HIV-1 Vpr-binding prot 82.8 2.7 5.8E-05 42.7 5.6 138 123-260 593-787 (1516)
333 PF10363 DUF2435: Protein of u 82.8 5 0.00011 29.0 5.8 69 176-247 5-73 (92)
334 PF11865 DUF3385: Domain of un 82.7 9.3 0.0002 30.9 8.0 140 92-244 15-155 (160)
335 COG5218 YCG1 Chromosome conden 82.7 18 0.00038 35.4 10.7 113 173-292 90-205 (885)
336 PF11865 DUF3385: Domain of un 82.3 14 0.00031 29.8 9.0 139 174-323 10-155 (160)
337 PF10272 Tmpp129: Putative tra 82.2 1 2.2E-05 41.2 2.4 29 26-54 311-351 (358)
338 KOG1820 Microtubule-associated 82.1 28 0.00062 35.9 12.7 135 102-246 308-443 (815)
339 PF14726 RTTN_N: Rotatin, an a 82.1 5.3 0.00011 29.3 5.7 93 104-198 2-95 (98)
340 KOG1967 DNA repair/transcripti 81.8 14 0.00031 37.9 10.2 176 186-367 786-982 (1030)
341 PF07191 zinc-ribbons_6: zinc- 81.5 0.03 6.4E-07 37.7 -5.6 41 8-54 1-41 (70)
342 KOG0915 Uncharacterized conser 81.3 56 0.0012 35.9 14.6 200 102-310 970-1186(1702)
343 PF14726 RTTN_N: Rotatin, an a 81.3 16 0.00035 26.7 8.0 75 289-364 23-97 (98)
344 PRK14707 hypothetical protein; 81.2 1.1E+02 0.0024 35.2 21.5 267 92-367 126-404 (2710)
345 KOG2956 CLIP-associating prote 81.2 47 0.001 31.6 12.6 182 133-325 285-477 (516)
346 KOG3579 Predicted E3 ubiquitin 81.1 0.97 2.1E-05 39.2 1.8 36 6-41 266-305 (352)
347 PF08324 PUL: PUL domain; Int 80.9 39 0.00084 29.8 14.2 185 176-361 65-268 (268)
348 PF05883 Baculo_RING: Baculovi 80.6 0.98 2.1E-05 34.8 1.5 42 8-50 26-76 (134)
349 PLN02400 cellulose synthase 80.4 0.73 1.6E-05 47.9 1.0 46 9-54 37-89 (1085)
350 KOG1967 DNA repair/transcripti 79.7 5.9 0.00013 40.5 6.8 137 131-270 867-1007(1030)
351 KOG0301 Phospholipase A2-activ 79.5 70 0.0015 31.9 13.9 158 144-307 555-727 (745)
352 PLN02915 cellulose synthase A 79.5 1.1 2.3E-05 46.5 1.8 47 8-54 15-68 (1044)
353 KOG0414 Chromosome condensatio 79.3 20 0.00044 37.9 10.5 156 175-350 920-1083(1251)
354 KOG3268 Predicted E3 ubiquitin 79.2 1.8 4E-05 34.7 2.6 45 10-54 167-228 (234)
355 PF00790 VHS: VHS domain; Int 79.0 11 0.00023 29.7 7.1 69 297-365 43-116 (140)
356 KOG2032 Uncharacterized conser 78.8 64 0.0014 31.0 19.0 251 103-367 272-531 (533)
357 PRK14707 hypothetical protein; 78.7 1.3E+02 0.0029 34.6 19.8 262 92-362 168-440 (2710)
358 KOG0414 Chromosome condensatio 78.5 22 0.00047 37.7 10.5 132 101-248 935-1066(1251)
359 smart00288 VHS Domain present 78.5 8.7 0.00019 29.9 6.3 70 91-162 41-111 (133)
360 PF14353 CpXC: CpXC protein 78.3 1.5 3.3E-05 33.9 2.0 47 8-54 1-49 (128)
361 KOG2032 Uncharacterized conser 78.2 66 0.0014 30.9 15.1 161 129-290 252-422 (533)
362 KOG2932 E3 ubiquitin ligase in 78.2 1.2 2.6E-05 39.2 1.4 42 10-54 92-134 (389)
363 PF03854 zf-P11: P-11 zinc fin 75.6 0.48 1E-05 29.0 -1.1 36 18-54 10-46 (50)
364 PF06844 DUF1244: Protein of u 74.5 2.1 4.5E-05 28.3 1.5 13 29-41 11-23 (68)
365 KOG4464 Signaling protein RIC- 74.5 77 0.0017 29.8 15.8 103 103-205 111-233 (532)
366 KOG2062 26S proteasome regulat 74.1 25 0.00053 35.4 9.1 112 102-230 568-679 (929)
367 cd03569 VHS_Hrs_Vps27p VHS dom 73.8 12 0.00027 29.5 6.1 73 173-246 40-114 (142)
368 PF06906 DUF1272: Protein of u 73.1 4.5 9.7E-05 25.9 2.7 42 10-54 7-52 (57)
369 KOG4445 Uncharacterized conser 73.0 1.4 3E-05 38.6 0.5 47 8-54 115-186 (368)
370 cd03561 VHS VHS domain family; 72.8 17 0.00036 28.3 6.6 72 90-163 40-113 (133)
371 cd00197 VHS_ENTH_ANTH VHS, ENT 72.5 30 0.00065 26.0 7.8 70 297-366 38-114 (115)
372 PF10497 zf-4CXXC_R1: Zinc-fin 72.3 3.4 7.4E-05 30.7 2.4 44 8-51 7-69 (105)
373 PF00790 VHS: VHS domain; Int 71.5 14 0.00031 29.0 6.0 69 91-161 46-117 (140)
374 KOG0825 PHD Zn-finger protein 71.4 3.5 7.5E-05 41.2 2.8 47 5-51 93-151 (1134)
375 COG5656 SXM1 Importin, protein 71.3 1.3E+02 0.0027 30.8 13.8 123 130-256 407-538 (970)
376 cd03568 VHS_STAM VHS domain fa 71.2 5.7 0.00012 31.5 3.6 91 131-227 37-130 (144)
377 PF09538 FYDLN_acid: Protein o 71.1 2.8 6E-05 31.3 1.7 12 43-54 26-37 (108)
378 KOG2137 Protein kinase [Signal 71.0 1.1E+02 0.0024 30.8 12.8 132 216-355 389-525 (700)
379 PF14666 RICTOR_M: Rapamycin-i 70.7 69 0.0015 27.6 11.7 128 188-324 78-224 (226)
380 PF11707 Npa1: Ribosome 60S bi 70.3 88 0.0019 28.6 12.3 156 92-250 61-241 (330)
381 KOG2137 Protein kinase [Signal 70.2 63 0.0014 32.5 11.0 133 129-270 387-520 (700)
382 KOG3053 Uncharacterized conser 69.8 3.4 7.4E-05 35.4 2.1 50 5-54 17-82 (293)
383 cd00350 rubredoxin_like Rubred 69.5 3.8 8.3E-05 23.2 1.7 10 43-52 17-26 (33)
384 PF12530 DUF3730: Protein of u 68.3 79 0.0017 27.3 16.4 189 144-352 12-217 (234)
385 PF10363 DUF2435: Protein of u 68.1 19 0.00042 26.0 5.5 68 298-367 5-72 (92)
386 KOG2034 Vacuolar sorting prote 67.9 3.5 7.6E-05 41.8 2.1 36 5-40 814-851 (911)
387 PF08216 CTNNBL: Catenin-beta- 67.4 4.5 9.7E-05 30.1 2.1 42 150-191 63-104 (108)
388 KOG1020 Sister chromatid cohes 67.2 48 0.001 36.3 10.0 133 92-244 821-958 (1692)
389 KOG2062 26S proteasome regulat 66.8 1.2E+02 0.0026 30.8 12.0 71 174-253 554-625 (929)
390 KOG4718 Non-SMC (structural ma 66.7 4 8.7E-05 33.9 1.9 45 9-54 182-227 (235)
391 PF11707 Npa1: Ribosome 60S bi 66.3 87 0.0019 28.7 10.8 101 104-206 129-240 (330)
392 PF10571 UPF0547: Uncharacteri 66.3 2.4 5.1E-05 22.6 0.4 9 10-18 2-10 (26)
393 PF08506 Cse1: Cse1; InterPro 66.2 78 0.0017 29.6 10.5 144 90-241 212-370 (370)
394 PF08216 CTNNBL: Catenin-beta- 65.8 8.8 0.00019 28.6 3.4 42 106-150 63-104 (108)
395 PF14500 MMS19_N: Dos2-interac 65.8 96 0.0021 27.4 12.6 208 135-364 3-234 (262)
396 PF04064 DUF384: Domain of unk 65.5 26 0.00056 22.9 5.1 47 320-367 2-49 (58)
397 PF12726 SEN1_N: SEN1 N termin 64.6 1.6E+02 0.0035 30.4 13.5 121 216-338 441-568 (727)
398 COG5098 Chromosome condensatio 64.4 21 0.00046 35.7 6.4 107 135-246 303-415 (1128)
399 KOG4231 Intracellular membrane 64.2 7 0.00015 37.3 3.2 63 304-367 336-399 (763)
400 PF10235 Cript: Microtubule-as 63.6 3.4 7.4E-05 29.5 0.8 36 9-54 45-80 (90)
401 cd03567 VHS_GGA VHS domain fam 63.3 32 0.00069 27.0 6.3 70 90-161 41-115 (139)
402 KOG2933 Uncharacterized conser 63.3 67 0.0015 28.9 8.8 127 179-318 93-227 (334)
403 PF12074 DUF3554: Domain of un 62.7 1.3E+02 0.0027 27.7 16.5 203 150-365 4-233 (339)
404 cd03565 VHS_Tom1 VHS domain fa 62.6 55 0.0012 25.8 7.6 70 297-366 39-114 (141)
405 KOG1815 Predicted E3 ubiquitin 62.4 5.9 0.00013 38.0 2.5 35 7-41 69-104 (444)
406 PRK06266 transcription initiat 62.2 7 0.00015 32.2 2.6 13 42-54 135-147 (178)
407 KOG2676 Uncharacterized conser 61.9 38 0.00082 31.0 7.1 78 291-369 352-431 (478)
408 PF08167 RIX1: rRNA processing 61.2 29 0.00063 28.1 6.1 104 92-202 30-142 (165)
409 KOG1952 Transcription factor N 60.8 7.7 0.00017 39.3 3.0 45 7-51 190-244 (950)
410 KOG2199 Signal transducing ada 60.8 42 0.00091 31.1 7.3 71 297-367 46-118 (462)
411 PF14205 Cys_rich_KTR: Cystein 58.7 6.9 0.00015 24.9 1.5 12 9-20 5-16 (55)
412 COG5116 RPN2 26S proteasome re 57.9 71 0.0015 31.4 8.6 90 133-230 587-676 (926)
413 COG3492 Uncharacterized protei 57.7 6.7 0.00015 27.7 1.4 13 29-41 42-54 (104)
414 TIGR02300 FYDLN_acid conserved 57.6 6.9 0.00015 29.8 1.6 12 43-54 26-37 (129)
415 KOG2152 Sister chromatid cohes 57.4 1.7E+02 0.0036 29.9 11.1 159 162-338 363-556 (865)
416 KOG1243 Protein kinase [Genera 57.3 1.1E+02 0.0023 30.9 9.9 181 128-322 327-512 (690)
417 PF11791 Aconitase_B_N: Aconit 57.0 20 0.00044 28.4 4.1 28 217-245 95-122 (154)
418 KOG0883 Cyclophilin type, U bo 56.7 7 0.00015 35.7 1.8 33 8-40 40-72 (518)
419 KOG2462 C2H2-type Zn-finger pr 56.2 5 0.00011 34.9 0.8 50 6-55 159-227 (279)
420 PF04499 SAPS: SIT4 phosphatas 55.0 1E+02 0.0022 29.9 9.5 110 258-369 21-151 (475)
421 PF12830 Nipped-B_C: Sister ch 54.7 54 0.0012 27.2 6.7 65 297-366 9-73 (187)
422 PF04216 FdhE: Protein involve 54.6 1.1 2.4E-05 40.3 -3.7 46 8-54 172-222 (290)
423 PF12463 DUF3689: Protein of u 54.5 1.7E+02 0.0036 26.5 10.6 125 124-249 2-176 (303)
424 KOG3842 Adaptor protein Pellin 54.5 11 0.00024 33.4 2.6 47 7-54 340-414 (429)
425 KOG1848 Uncharacterized conser 54.3 3.4E+02 0.0074 30.1 15.5 248 102-366 855-1131(1610)
426 PF06012 DUF908: Domain of Unk 53.2 60 0.0013 29.7 7.4 67 189-255 237-306 (329)
427 PF06685 DUF1186: Protein of u 52.8 1.6E+02 0.0035 25.8 10.4 42 295-336 110-153 (249)
428 cd08050 TAF6 TATA Binding Prot 51.8 1.3E+02 0.0028 27.8 9.3 97 132-229 211-322 (343)
429 KOG2933 Uncharacterized conser 51.3 1.7E+02 0.0037 26.5 9.3 72 297-369 130-201 (334)
430 KOG1812 Predicted E3 ubiquitin 51.2 7.5 0.00016 36.4 1.1 34 9-42 307-345 (384)
431 KOG1566 Conserved protein Mo25 50.9 1.9E+02 0.0042 26.2 13.7 219 123-348 71-310 (342)
432 PF12773 DZR: Double zinc ribb 50.7 13 0.00029 23.1 1.9 27 28-54 12-40 (50)
433 PF00096 zf-C2H2: Zinc finger, 50.6 4.7 0.0001 20.2 -0.1 13 9-21 1-13 (23)
434 KOG1788 Uncharacterized conser 50.5 3.6E+02 0.0078 29.2 17.6 78 249-326 899-983 (2799)
435 PF14663 RasGEF_N_2: Rapamycin 49.6 79 0.0017 23.9 6.3 40 217-257 9-48 (115)
436 PF14666 RICTOR_M: Rapamycin-i 49.5 1.7E+02 0.0037 25.2 13.7 124 232-366 79-224 (226)
437 TIGR01562 FdhE formate dehydro 48.8 3.2 6.9E-05 37.3 -1.6 44 8-52 184-233 (305)
438 TIGR00373 conserved hypothetic 48.7 12 0.00026 30.2 1.8 13 42-54 127-139 (158)
439 PRK11088 rrmA 23S rRNA methylt 47.5 8.6 0.00019 34.1 0.9 24 8-31 2-28 (272)
440 KOG0314 Predicted E3 ubiquitin 47.2 8 0.00017 36.5 0.7 66 5-73 216-285 (448)
441 COG4530 Uncharacterized protei 47.1 19 0.00042 26.5 2.5 31 5-35 6-41 (129)
442 KOG0413 Uncharacterized conser 46.9 2.2E+02 0.0047 30.2 10.3 122 232-364 946-1070(1529)
443 KOG1078 Vesicle coat complex C 46.9 3.5E+02 0.0075 27.9 18.9 76 131-210 241-318 (865)
444 KOG1832 HIV-1 Vpr-binding prot 46.9 1.3E+02 0.0029 31.3 8.8 114 232-349 368-491 (1516)
445 PF10521 DUF2454: Protein of u 46.4 93 0.002 27.8 7.3 70 90-161 122-202 (282)
446 COG5116 RPN2 26S proteasome re 46.2 2.4E+02 0.0052 28.0 10.1 65 175-248 552-617 (926)
447 cd00730 rubredoxin Rubredoxin; 46.2 9.8 0.00021 23.9 0.7 13 4-16 30-42 (50)
448 KOG1428 Inhibitor of type V ad 45.6 21 0.00047 38.8 3.4 48 7-54 3485-3544(3738)
449 KOG2169 Zn-finger transcriptio 45.6 19 0.0004 36.3 3.0 67 5-74 303-375 (636)
450 PRK14559 putative protein seri 45.4 11 0.00024 37.9 1.3 8 10-17 3-10 (645)
451 COG5183 SSM4 Protein involved 45.3 17 0.00036 36.8 2.5 49 6-54 10-66 (1175)
452 KOG3476 Microtubule-associated 45.2 2.3 4.9E-05 29.7 -2.4 36 9-54 55-90 (100)
453 PF12830 Nipped-B_C: Sister ch 45.1 90 0.002 25.9 6.6 68 175-248 9-76 (187)
454 PF00301 Rubredoxin: Rubredoxi 45.0 9 0.00019 23.8 0.4 13 4-16 30-42 (47)
455 PF03130 HEAT_PBS: PBS lyase H 44.8 32 0.00068 18.2 2.5 26 190-226 1-26 (27)
456 COG1675 TFA1 Transcription ini 44.7 28 0.00061 28.5 3.4 13 43-55 132-144 (176)
457 COG3809 Uncharacterized protei 44.6 3 6.6E-05 28.5 -1.8 12 9-20 2-13 (88)
458 COG0068 HypF Hydrogenase matur 44.0 10 0.00022 37.9 0.8 50 5-54 98-184 (750)
459 KOG2676 Uncharacterized conser 43.7 9.9 0.00022 34.6 0.7 63 109-171 376-439 (478)
460 TIGR03504 FimV_Cterm FimV C-te 43.6 75 0.0016 19.3 4.4 28 338-365 17-44 (44)
461 PF01417 ENTH: ENTH domain; I 43.5 1.3E+02 0.0027 23.0 6.8 91 272-368 21-122 (125)
462 PF04821 TIMELESS: Timeless pr 42.9 2.4E+02 0.0052 24.9 14.7 126 105-248 10-151 (266)
463 PF12726 SEN1_N: SEN1 N termin 42.6 1.6E+02 0.0034 30.5 9.2 115 133-252 443-558 (727)
464 PF11791 Aconitase_B_N: Aconit 42.6 64 0.0014 25.7 4.9 29 297-325 95-123 (154)
465 cd03562 CID CID (CTD-Interacti 42.4 1.4E+02 0.0031 22.2 7.0 73 297-369 38-110 (114)
466 cd00729 rubredoxin_SM Rubredox 42.2 20 0.00043 20.4 1.6 10 43-52 18-27 (34)
467 PF08711 Med26: TFIIS helical 41.8 87 0.0019 19.6 5.1 44 320-364 3-47 (53)
468 KOG1992 Nuclear export recepto 41.7 4.3E+02 0.0093 27.5 15.5 172 132-307 499-706 (960)
469 PRK03564 formate dehydrogenase 41.6 9.2 0.0002 34.4 0.2 45 7-52 186-235 (309)
470 PF04423 Rad50_zn_hook: Rad50 41.3 12 0.00027 23.8 0.7 10 45-54 22-31 (54)
471 PRK11595 DNA utilization prote 41.1 18 0.00039 31.1 1.9 39 10-54 7-45 (227)
472 PF13894 zf-C2H2_4: C2H2-type 40.8 9.2 0.0002 19.0 0.0 12 9-20 1-12 (24)
473 KOG1087 Cytosolic sorting prot 40.8 1E+02 0.0022 29.7 6.9 67 297-363 39-108 (470)
474 PF06012 DUF908: Domain of Unk 40.4 1.7E+02 0.0037 26.8 8.2 73 273-345 241-323 (329)
475 PF14225 MOR2-PAG1_C: Cell mor 40.1 2.6E+02 0.0057 24.6 16.2 176 131-325 60-254 (262)
476 KOG4185 Predicted E3 ubiquitin 39.1 10 0.00022 34.1 0.0 44 9-52 208-265 (296)
477 PRK01343 zinc-binding protein; 38.7 34 0.00074 22.2 2.3 34 8-41 9-42 (57)
478 PF12074 DUF3554: Domain of un 38.4 3.1E+02 0.0068 25.0 12.1 111 105-227 3-114 (339)
479 KOG3475 60S ribosomal protein 38.4 21 0.00046 24.9 1.4 28 27-54 15-42 (92)
480 KOG1829 Uncharacterized conser 38.4 19 0.00042 35.3 1.8 39 8-50 511-557 (580)
481 PF01347 Vitellogenin_N: Lipop 38.4 4.2E+02 0.0092 26.5 12.7 124 90-241 489-617 (618)
482 PF04641 Rtf2: Rtf2 RING-finge 38.1 24 0.00052 31.1 2.2 34 8-41 34-68 (260)
483 COG5537 IRR1 Cohesin [Cell div 37.8 2.2E+02 0.0049 28.3 8.5 97 102-203 288-386 (740)
484 PF12397 U3snoRNP10: U3 small 37.6 92 0.002 23.5 5.2 68 175-248 7-76 (121)
485 smart00734 ZnF_Rad18 Rad18-lik 37.6 16 0.00035 19.3 0.7 9 10-18 3-11 (26)
486 PF14663 RasGEF_N_2: Rapamycin 37.5 1.2E+02 0.0026 22.9 5.7 38 296-334 8-45 (115)
487 PLN03086 PRLI-interacting fact 37.4 35 0.00076 33.6 3.3 6 44-50 479-484 (567)
488 PF13251 DUF4042: Domain of un 37.3 2.4E+02 0.0052 23.4 9.1 144 104-249 1-177 (182)
489 PRK04023 DNA polymerase II lar 36.7 25 0.00055 36.7 2.4 45 7-54 625-674 (1121)
490 smart00132 LIM Zinc-binding do 35.5 21 0.00045 20.3 1.0 36 10-54 1-38 (39)
491 PF04499 SAPS: SIT4 phosphatas 35.5 3.7E+02 0.0079 26.2 9.9 73 171-245 59-147 (475)
492 KOG2593 Transcription initiati 34.8 29 0.00062 32.5 2.2 49 6-66 126-176 (436)
493 KOG2152 Sister chromatid cohes 34.2 3.3E+02 0.0073 27.8 9.2 156 120-293 364-554 (865)
494 PF00412 LIM: LIM domain; Int 34.1 21 0.00045 22.8 0.9 30 8-37 26-56 (58)
495 smart00531 TFIIE Transcription 33.8 15 0.00032 29.2 0.2 13 42-54 122-134 (147)
496 PRK00420 hypothetical protein; 33.6 10 0.00022 28.5 -0.7 13 42-54 39-51 (112)
497 PF08389 Xpo1: Exportin 1-like 33.4 2.2E+02 0.0048 21.8 8.1 62 297-362 83-148 (148)
498 KOG3993 Transcription factor ( 33.4 5.1 0.00011 37.0 -2.7 42 6-54 265-306 (500)
499 KOG1609 Protein involved in mR 33.3 33 0.00073 31.0 2.5 47 8-54 78-134 (323)
500 PF07975 C1_4: TFIIH C1-like d 33.0 36 0.00077 21.5 1.8 39 11-50 2-50 (51)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=7.5e-29 Score=258.57 Aligned_cols=276 Identities=20% Similarity=0.242 Sum_probs=243.3
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhh-cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
..+++.|.+++++++.+..|+..|+.+++.++++|..+.+ .|+||.|+.+|. +++..+++.++.+|.+++.+++++.
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~--sg~~~vk~nAaaaL~nLS~~e~nk~ 93 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR--SGTLGAKVNAAAVLGVLCKEEDLRV 93 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCHHHHH
Confidence 5688999988667899999999999999999999999997 799999999999 7889999999999999999999999
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc---ccchhhhccccchHHHHHHHhhcCCc--hHHHHHHHHHHHh
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV---EVNKATIGDYPYAINALVSLLQNGKL--IREKKEAATALYA 243 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~---~~~~~~i~~~~g~i~~Lv~ll~~~~~--~~~~~~a~~aL~~ 243 (372)
.|+..|+|++|+.+|++++.+.|+.|+++|++|+.+ ++++..|+...|+||.|+.++++++. ..++..|+.+|+|
T Consensus 94 ~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~n 173 (2102)
T PLN03200 94 KVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRN 173 (2102)
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 34555554337999999999998642 2356788899999
Q ss_pred hcCCCchhH-HHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcC-ChhHHHhH
Q 017402 244 LTSFPENRK-RVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTG-SSRAVQCS 316 (372)
Q Consensus 244 L~~~~~~~~-~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~-~~~~~~~a 316 (372)
||.+++++. .++++|+|+.|+.+|+++ ++.++.+|.+++.. ++++..+++ .|+++.|++++.++ ++.+++.|
T Consensus 174 Ls~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~A 252 (2102)
T PLN03200 174 LCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVRAEA 252 (2102)
T ss_pred HhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHHHHH
Confidence 999998875 568999999999999655 77899989888865 678888888 89999999999764 45889999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhccc---------HHHHHHHHHHHHHHhcC
Q 017402 317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDN---------EKVRRNANNLIQTLSGN 368 (372)
Q Consensus 317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~---------~~v~~~a~~~L~~l~~~ 368 (372)
+++|.+||.++++++..+++.|+++.|++++.+.+ ...+++|.|+|.++-..
T Consensus 253 A~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 253 AGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999998644 34599999999997664
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.8e-29 Score=227.30 Aligned_cols=279 Identities=19% Similarity=0.225 Sum_probs=249.3
Q ss_pred CCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cc
Q 017402 87 PNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DD 165 (372)
Q Consensus 87 ~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~ 165 (372)
...|.++..|..+ .++..+.+|+++|.|++.++.+..+.++++|.+|.++.+|. +.+..+++.|+++|.|++.+ +.
T Consensus 109 G~v~~lV~~l~~~-~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 109 GVVPRLVEFLSRD-DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred CcHHHHHHHHccC-CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc--CCcHHHHHHHHHHHhccccCChH
Confidence 4558899999865 47899999999999999999999999999999999999999 89999999999999999988 67
Q ss_pred ccccccccCChHHHHHHHhcCCh-HHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 166 NKVGLVAEGAVSRVVAALRFGSP-DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 166 ~~~~i~~~g~i~~lv~~L~~~~~-~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
.|..+.+.|++++|+.++...+. ....+++|+|.||+.+......+.....++|.|..++.+.+. ++...|+|+|++|
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~-~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE-EVLTDACWALSYL 264 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHH
Confidence 78888899999999999987765 788899999999998775444444446899999999999988 9999999999999
Q ss_pred cCC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHH
Q 017402 245 TSF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLF 318 (372)
Q Consensus 245 ~~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~ 318 (372)
+.. ++..+.+++.|+++.|+++|.+. .--|+.++.|++.+.+.+.+.+-..|+++.|..++.. ..+.+++.|++
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 975 56778888999999999999654 4469999999999999988877779999999999984 55568899999
Q ss_pred HHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 319 TLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 319 ~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
++.||+.++++..+.++++|++|.|+.+++++..++|+.|+|++.++..+.
T Consensus 345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred HHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999999999999999999999987765
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=4.6e-28 Score=252.75 Aligned_cols=275 Identities=18% Similarity=0.238 Sum_probs=238.5
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
.|.|+++|.++ +++.|..|++.|++++.++++++..++++|+||.|+++|. +++..+++.|+++|.|++.++++..
T Consensus 448 Ip~LV~LL~s~--s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~--s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 448 VQLLISLLGLS--SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE--TGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 47799999876 7889999999999999988889999999999999999999 7899999999999999998865555
Q ss_pred c-ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch-------------------------------------hh
Q 017402 169 G-LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK-------------------------------------AT 210 (372)
Q Consensus 169 ~-i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~-------------------------------------~~ 210 (372)
. +.++|++++|+++|++++.+.+..|+++|.+++...++. ..
T Consensus 524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 4 447899999999999999999999999999996432211 11
Q ss_pred hccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-
Q 017402 211 IGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC- 284 (372)
Q Consensus 211 i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~- 284 (372)
.....|+++.|+++++++++ .+++.|+++|.+++.. ++.+..++..|+|++|+.+|.++ +..++++|.|++.+
T Consensus 604 g~~~~ggL~~Lv~LL~sgs~-~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSSKE-ETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred hhhccccHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 11125899999999999988 9999999999999985 46788999999999999999655 67799999999963
Q ss_pred -HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHH
Q 017402 285 -KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQ 363 (372)
Q Consensus 285 -~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~ 363 (372)
+..+..++. .|++++|+++++..+..+.+.|+.+|.+++.. ++.+.++.+.|+++.|+++++++++++|+.|+++|.
T Consensus 683 ~~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~ 760 (2102)
T PLN03200 683 KENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALA 760 (2102)
T ss_pred CHHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Confidence 334455666 89999999999999999999999999999988 888899999999999999999999999999999998
Q ss_pred HHhcCCC
Q 017402 364 TLSGNPS 370 (372)
Q Consensus 364 ~l~~~~~ 370 (372)
.|-.+..
T Consensus 761 ~L~~~~~ 767 (2102)
T PLN03200 761 QLLKHFP 767 (2102)
T ss_pred HHHhCCC
Confidence 7766543
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.9e-28 Score=209.72 Aligned_cols=271 Identities=20% Similarity=0.235 Sum_probs=245.4
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
.+++. |.+ +.+..+|..+..+|.+++. +.++|+.++.+|++|.|+.+++ +++.++|+.+..+|.|++.+..+|+.
T Consensus 170 ~pltr-Lak-skdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~--s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 170 EPLTR-LAK-SKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLK--SGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred hhhHh-hcc-cchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhc--cCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 44665 433 2478899999999999997 6779999999999999999999 89999999999999999999999999
Q ss_pred ccccC--ChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 170 LVAEG--AVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 170 i~~~g--~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
+++.+ .++.|+.++.++++.++-.|.-+|.+++...++...|++ .|.+|.++++++++.- ........+++|++.+
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~-plilasVaCIrnisih 322 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMG-PLILASVACIRNISIH 322 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcch-hHHHHHHHHHhhcccc
Confidence 99887 999999999999999999999999999999999999999 8999999999988766 6777788899999999
Q ss_pred CchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHH
Q 017402 248 PENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLS 321 (372)
Q Consensus 248 ~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 321 (372)
+-|-..|+++|.+.+|+++|+.+ +-+|..+|+||+. .+.++..|.+ .|+++.+.+++.+++-.+++.-..++.
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHH
Confidence 99999999999999999999654 4468999999999 5667778888 899999999999999999988888888
Q ss_pred HHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 322 CLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 322 ~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
.++.. +..+..+.+.|+++.|+....+.+.+++-.|+.+|-+|+...
T Consensus 402 ~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 402 QLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHHhc-cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 88876 788899999999999999999999999999999999998753
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.6e-28 Score=210.77 Aligned_cols=260 Identities=23% Similarity=0.325 Sum_probs=237.8
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA 181 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~ 181 (372)
..++|..+++.|.+|+..+ ++|..+...|++.++.++-+ +++..+|..+..+|.||....++|..++.+|++|.||.
T Consensus 139 ~vevqcnaVgCitnLaT~d-~nk~kiA~sGaL~pltrLak--skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVs 215 (550)
T KOG4224|consen 139 GVEVQCNAVGCITNLATFD-SNKVKIARSGALEPLTRLAK--SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVS 215 (550)
T ss_pred CcEEEeeehhhhhhhhccc-cchhhhhhccchhhhHhhcc--cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhh
Confidence 5688999999999999875 59999999999999999666 78899999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhcccccchhhhccccc--hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCc
Q 017402 182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY--AINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGA 259 (372)
Q Consensus 182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g--~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~ 259 (372)
++++++.+++.+++-++.+++.+...+..+++ .+ .|+.|+.+++++++ .++-.|..+|.||++..+-...++++|.
T Consensus 216 ll~s~d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~-kvkcqA~lALrnlasdt~Yq~eiv~ag~ 293 (550)
T KOG4224|consen 216 LLKSGDLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSD-KVKCQAGLALRNLASDTEYQREIVEAGS 293 (550)
T ss_pred hhccCChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCCh-HHHHHHHHHHhhhcccchhhhHHHhcCC
Confidence 99999999999999999999998888888877 55 99999999999999 9999999999999999999999999999
Q ss_pred hHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcC-ChhHHHhHHHHHHHHhcCCHHHHHHH
Q 017402 260 VPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTG-SSRAVQCSLFTLSCLCCCSQEICGDS 334 (372)
Q Consensus 260 v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~ 334 (372)
+|.++++++++ .-..+..+.|++-++-+.--|++ .|.+.+||++|..+ ++.++-+|..+|++++..++.++..+
T Consensus 294 lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i 372 (550)
T KOG4224|consen 294 LPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVI 372 (550)
T ss_pred chHHHHHHhCcchhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHH
Confidence 99999999776 34466778999998887777777 89999999999875 55689999999999999889999999
Q ss_pred HhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 335 RKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 335 ~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
.+.|.++++.+++.++...+|..-..++..|.-
T Consensus 373 ~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 373 RESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred hhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 999999999999999999999888888876653
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=1.1e-26 Score=199.13 Aligned_cols=283 Identities=15% Similarity=0.153 Sum_probs=245.5
Q ss_pred CCCCCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 017402 83 EHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL 162 (372)
Q Consensus 83 ~~~~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~ 162 (372)
......+|.+++++.+. ...-.+.+|+++|.|++.+.....+.++++|.+|.++.+|. +.+.++++.+.++|.|++.
T Consensus 110 VIdaGvVpRfvefm~~~-q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~--s~~~~V~eQavWALGNiAG 186 (526)
T COG5064 110 VIDAGVVPRFVEFMDEI-QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS--STEDDVREQAVWALGNIAG 186 (526)
T ss_pred HHhccccHHHHHHHHhc-chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHc--CchHHHHHHHHHHhccccC
Confidence 34456678999999654 35567889999999999988777778889999999999999 8899999999999999998
Q ss_pred C-ccccccccccCChHHHHHHHhcCC--hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHH
Q 017402 163 D-DDNKVGLVAEGAVSRVVAALRFGS--PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAAT 239 (372)
Q Consensus 163 ~-~~~~~~i~~~g~i~~lv~~L~~~~--~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 239 (372)
+ +..|..+.+.|++++++.+|.+.. .....++.|+|.||+........-.....++|.|.+++.+.+. ++...|+|
T Consensus 187 DS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~-evlvDA~W 265 (526)
T COG5064 187 DSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDP-EVLVDACW 265 (526)
T ss_pred CchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCH-HHHHHHHH
Confidence 8 566778889999999999998764 4778899999999997653222222223689999999999888 99999999
Q ss_pred HHHhhcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHH
Q 017402 240 ALYALTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQ 314 (372)
Q Consensus 240 aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~ 314 (372)
+|+.|+..+ +....+++.|..+.|+++|.+. .--++..+.|+....+.+.+++-.-|+++.+-.+|.+..+.++.
T Consensus 266 AiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irK 345 (526)
T COG5064 266 AISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRK 345 (526)
T ss_pred HHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhh
Confidence 999999866 5667788999999999999665 45588999999999998888777789999999999988889999
Q ss_pred hHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 315 CSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 315 ~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
.|++.+.|+..++.+..+.+++++.+|.|++++.+..-.+|+.|+|++.+.+.+.
T Consensus 346 EaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg 400 (526)
T COG5064 346 EACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400 (526)
T ss_pred hhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999998999999999999999999999999999999999999988765
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.3e-25 Score=201.99 Aligned_cols=277 Identities=16% Similarity=0.156 Sum_probs=237.6
Q ss_pred CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCC-hhHHHHHHHHHhcCCCCc
Q 017402 86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDG-FTLQEKALSLLLNLSLDD 164 (372)
Q Consensus 86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~-~~~~~~a~~~L~~l~~~~ 164 (372)
...+|.++.+|.++ +.+++.+|+++|.|++.+++..|..+.+.|+++.|+.++. ..+ ......+.++|.||+.+.
T Consensus 151 agavp~fi~Ll~s~--~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~--~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSP--SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN--KSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred CCchHHHHHHhcCC--cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc--cccchHHHHHHHHHHHHHHcCC
Confidence 44568899999887 8899999999999999999999999999999999999998 333 368899999999999997
Q ss_pred cccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402 165 DNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA 243 (372)
Q Consensus 165 ~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~ 243 (372)
+....+.. ..++|.|..++.+.|.++...|+|+|.+|+.....+..++-..|+++.|+++|...+. .++..|++++.|
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~-~v~~PaLRaiGN 305 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP-KVVTPALRAIGN 305 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc-ccccHHHhhccc
Confidence 65554444 6789999999999999999999999999997765555544437999999999999888 899999999999
Q ss_pred hcCCC-chhHHHHhcCchHHHHHHHh-hh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHH
Q 017402 244 LTSFP-ENRKRVVSCGAVPILMRLAD-AG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSL 317 (372)
Q Consensus 244 L~~~~-~~~~~i~~~g~v~~L~~ll~-~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~ 317 (372)
++..+ .-.+.++..|+++.|..++. +. ++.|+++++|++.+...+.+.+...|.+|.|+++++++.-+.|..|+
T Consensus 306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 98855 46677889999999999996 33 57799999999997776655444489999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 318 FTLSCLCCCS-QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 318 ~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
+++.|++..+ ++.-..+++.|+++.+..+|.-.+.++-..+...|.++..
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 9999998764 4666778999999999999977788888888888887654
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.90 E-value=6.4e-23 Score=176.17 Aligned_cols=278 Identities=14% Similarity=0.127 Sum_probs=233.1
Q ss_pred CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402 86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165 (372)
Q Consensus 86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 165 (372)
...+|-++++|.+. ..+++.+++++|.|++.+++..|+.+.+.|++++++.+|.+...+..+...+.++|.||+.+..
T Consensus 156 ~~AVPlfiqlL~s~--~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 156 AGAVPLFIQLLSST--EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred CCchHHHHHHHcCc--hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 34568899999876 7899999999999999999999999999999999999998433345789999999999998843
Q ss_pred ccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 166 NKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 166 ~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
....-.. ...+|.|.+++.+.|+++..-|+|++.+|+.....+..++-..|..+.|+++|.+++. .++..|++.+.|+
T Consensus 234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa-~iqtPalR~vGNI 312 (526)
T COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESA-KIQTPALRSVGNI 312 (526)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccc-cccCHHHHhhcCe
Confidence 3221111 4578999999999999999999999999998775555544437999999999999887 8999999999999
Q ss_pred cCC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHH
Q 017402 245 TSF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFT 319 (372)
Q Consensus 245 ~~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 319 (372)
... +...+.++..|+++.+..+|.++ ++.+++.++|+......+.+.+.+...+|+|+++|....-..+..|+++
T Consensus 313 VTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWA 392 (526)
T COG5064 313 VTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWA 392 (526)
T ss_pred eecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 875 45667888999999999999766 6779999999998766665555548899999999998888999999999
Q ss_pred HHHHhcC---CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 320 LSCLCCC---SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 320 L~~l~~~---~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
+.|..++ -|+.-..+++.|+++.|..+|.-.+.++-+.+..++++.-
T Consensus 393 isNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniL 442 (526)
T COG5064 393 ISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENIL 442 (526)
T ss_pred HHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHH
Confidence 9998765 3688888999999999999999877777777788877543
No 9
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.89 E-value=1e-21 Score=186.34 Aligned_cols=282 Identities=22% Similarity=0.246 Sum_probs=232.4
Q ss_pred CCCCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC
Q 017402 84 HANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD 163 (372)
Q Consensus 84 ~~~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~ 163 (372)
...|+.|+.++.|.+. ++.++.+|...++.+|.++.+.|..+.+.|+|+.|+.+|. +.+.+++..|+.+|.||.+.
T Consensus 230 w~d~~lpe~i~mL~~q--~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~--~~~~evq~~acgaLRNLvf~ 305 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQ--DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD--HRNDEVQRQACGALRNLVFG 305 (717)
T ss_pred ccccccHHHHHHHhcc--ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc--CCcHHHHHHHHHHHHhhhcc
Confidence 3567779999999976 8999999999999999999999999999999999999999 89999999999999999887
Q ss_pred ---ccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC----------
Q 017402 164 ---DDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK---------- 229 (372)
Q Consensus 164 ---~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~---------- 229 (372)
++|+..|.+.++|+.++++|+. .|.++++..+++|+||++.+..|+.|.. .+++.|...+-.+.
T Consensus 306 ~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~ 383 (717)
T KOG1048|consen 306 KSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPR 383 (717)
T ss_pred cCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCccc
Confidence 4588999999999999999987 7999999999999999999888888876 67888877653321
Q ss_pred ---chHHHHHHHHHHHhhcC-CCchhHHHHhc-CchHHHHHHHhhh----------HHHHHHHHHHHhCCHh--------
Q 017402 230 ---LIREKKEAATALYALTS-FPENRKRVVSC-GAVPILMRLADAG----------LERAVEVLSILVKCKE-------- 286 (372)
Q Consensus 230 ---~~~~~~~a~~aL~~L~~-~~~~~~~i~~~-g~v~~L~~ll~~~----------~e~a~~~L~~L~~~~~-------- 286 (372)
...+..+++++|+|+++ ..+.|+++.+. |.|+.|+..+.+. .|+|+.+|.||+..-+
T Consensus 384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~ 463 (717)
T KOG1048|consen 384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR 463 (717)
T ss_pred ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence 13678899999999998 67899999877 8999999988421 7999999999986221
Q ss_pred -------------------------HHHH--------HHh------------ccchHHHHHHHHhc-CChhHHHhHHHHH
Q 017402 287 -------------------------GREE--------MMR------------VSGCVGVFVKMLKT-GSSRAVQCSLFTL 320 (372)
Q Consensus 287 -------------------------~~~~--------i~~------------~~g~i~~L~~ll~~-~~~~~~~~a~~~L 320 (372)
.++. +-+ +.-+|.....++.. .++...+.++++|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL 543 (717)
T KOG1048|consen 464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL 543 (717)
T ss_pred hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence 0000 000 01234444555543 5667789999999
Q ss_pred HHHhcCCH----HHHHHH-HhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCCCC
Q 017402 321 SCLCCCSQ----EICGDS-RKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSM 371 (372)
Q Consensus 321 ~~l~~~~~----~~~~~~-~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 371 (372)
.|++.... ..+..+ .++.+++.|+++++++++.|.+.++.+|++|+.+...
T Consensus 544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn 599 (717)
T KOG1048|consen 544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN 599 (717)
T ss_pred hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh
Confidence 99987643 555555 7788999999999999999999999999999987654
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=1.9e-20 Score=181.74 Aligned_cols=267 Identities=21% Similarity=0.221 Sum_probs=226.4
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
++.|+..|+++ +.+...-++..|.+|+.. .+|+..|.+.|+|+.|++++. +++.+++..++++|.||+.+++.|.
T Consensus 292 V~~Lv~~Ldr~--n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~--s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 292 VSLLVKCLDRE--NEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLP--SENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 35688888765 788999999999999984 569999999999999999999 7889999999999999999999999
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
.|++.|++|.|+.+|.++ ..+..+..+|+++|..++.|..+.. .+++|.++.++.+..+.++...++.++.|||.++
T Consensus 367 ~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 999999999999999754 4667799999999999999999988 7999999999877655467778899999999999
Q ss_pred chhHHHHhcCchHHHHHHHhhh-HHHHHHHHHHHhCCH-hHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhc
Q 017402 249 ENRKRVVSCGAVPILMRLADAG-LERAVEVLSILVKCK-EGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCC 325 (372)
Q Consensus 249 ~~~~~i~~~g~v~~L~~ll~~~-~e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 325 (372)
.+.+.+.+.|+++.|++..-.. ....++++.|++.++ ..+..+. +.+..|+..+.. .++...-.++++|.|+..
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~---~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFV---DFIGDLAKIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHH---HHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence 9999999999999999888555 455778999999998 4444443 378888888876 466778899999999987
Q ss_pred CCHHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHHHHHHh
Q 017402 326 CSQEICGDSRKEGVLDICMGLLEDD--NEKVRRNANNLIQTLS 366 (372)
Q Consensus 326 ~~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~L~~l~ 366 (372)
.+.+....+.+.+.+|.|..++..+ .+.+...+..++..+.
T Consensus 521 ~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 521 PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 7667767777789999999999875 4566666666665544
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.86 E-value=8.4e-20 Score=177.23 Aligned_cols=250 Identities=18% Similarity=0.174 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc
Q 017402 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF 185 (372)
Q Consensus 106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~ 185 (372)
..-++..|.|++. +..+...|.+.|+++.|+++|. +++.++...++.+|.+|+...+|+..|.+.|+++.|++++.+
T Consensus 266 lrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ld--r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 266 LRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLD--RENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 3456777999998 6679999999999999999999 788999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHH
Q 017402 186 GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMR 265 (372)
Q Consensus 186 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ 265 (372)
++.+.+..++++|.|||.+.+.+..++. .|+||.|+.+|.++ ..+..++.+|++||.++++|..+...+++|.+++
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~-~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~ 418 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVS-LGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQ 418 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHH-CCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHH
Confidence 9999999999999999999999999999 79999999999865 4567799999999999999999999999999999
Q ss_pred HHhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChh
Q 017402 266 LADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVL 340 (372)
Q Consensus 266 ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~ 340 (372)
++-++ ...+++++.||+.+..+.+.+++ +|+++.|++...+... ...+..+.|++.+++..+..+. +.+
T Consensus 419 ~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i 492 (708)
T PF05804_consen 419 MLLENSEEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFI 492 (708)
T ss_pred HHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHH
Confidence 88433 34578999999999999999998 7889999888755332 2345799999999656555554 477
Q ss_pred HHHHHHhhcc-cHHHHHHHHHHHHHHhcC
Q 017402 341 DICMGLLEDD-NEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 341 ~~l~~ll~~~-~~~v~~~a~~~L~~l~~~ 368 (372)
..|+.++.++ +++..-.+.++|.+|...
T Consensus 493 ~~L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 493 GDLAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred HHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 8888888764 788899999999998743
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=4.1e-19 Score=152.65 Aligned_cols=276 Identities=18% Similarity=0.234 Sum_probs=234.0
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc--
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV-- 168 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~-- 168 (372)
-++.+|....++.++-.-.++.++.-|..++.||+.|.+.++.+.+...|..+ +...+...+.++++-|..+++.|.
T Consensus 149 vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~-gk~~~VRel~~a~r~l~~dDDiRV~f 227 (461)
T KOG4199|consen 149 VVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNRE-GKTRTVRELYDAIRALLTDDDIRVVF 227 (461)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHccc-CccHHHHHHHHHHHHhcCCCceeeec
Confidence 36788888878888888899999999999999999999999999999888743 444688889999999998887764
Q ss_pred --------cccccCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchH---HHHH
Q 017402 169 --------GLVAEGAVSRVVAALRFG-SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIR---EKKE 236 (372)
Q Consensus 169 --------~i~~~g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~---~~~~ 236 (372)
.|.+.|++..|++.+.-+ ++++...++.+|..|+..++.+..|.+ .|++..|++++.+.++.. ..+.
T Consensus 228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhHHHHHHH
Confidence 556678899999999874 789999999999999999999999999 799999999999865533 5578
Q ss_pred HHHHHHhhcCCCchhHHHHhcCchHHHHHHH----hhh--HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcC-
Q 017402 237 AATALYALTSFPENRKRVVSCGAVPILMRLA----DAG--LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTG- 308 (372)
Q Consensus 237 a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll----~~~--~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~- 308 (372)
++..|+.|+.+++++..|++.|+.+.++.++ +++ .+.++.+++-||-- ++....+++ .|+-...++.|+..
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmkahP 385 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMKAHP 385 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHHhCc
Confidence 8999999999999999999999999999888 223 67788888888874 555566666 78888889999774
Q ss_pred -ChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCCC
Q 017402 309 -SSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPS 370 (372)
Q Consensus 309 -~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 370 (372)
...++++|+.++.|+..++.+++..++..| ++.|+......++..+..|..+|+-|-.+.+
T Consensus 386 ~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~v~ 447 (461)
T KOG4199|consen 386 VAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGCDVY 447 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcchh
Confidence 346789999999999999999999999886 6777788888899999999999998766543
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=3e-17 Score=141.26 Aligned_cols=263 Identities=18% Similarity=0.224 Sum_probs=225.1
Q ss_pred CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhc-CCCCccccccccccCChHHH
Q 017402 101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN-LSLDDDNKVGLVAEGAVSRV 179 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~l 179 (372)
.++....+++.+|..+....|+ +.++.+...++++|....++.++-...+..+.. ...++.+|..+++.++++.+
T Consensus 119 ~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li 194 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELI 194 (461)
T ss_pred CchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 4667788999999998876554 467788999999998555677888888888866 44669999999999999999
Q ss_pred HHHHhc-CChHHHHHHHHHHHHhcccccch----------hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 180 VAALRF-GSPDCRAIAATIITSLAVVEVNK----------ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 180 v~~L~~-~~~~~~~~a~~~L~~ls~~~~~~----------~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
...|.. +...+...+++++..|..+++.| ..|.. .|++..|++.++-..++.+...+..+|..|+..+
T Consensus 195 ~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~ 273 (461)
T KOG4199|consen 195 LQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKALAVRD 273 (461)
T ss_pred HHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 988865 45568888999999998887644 34445 4789999999998876789999999999999999
Q ss_pred chhHHHHhcCchHHHHHHHhhh--------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc--CChhHHHhHHH
Q 017402 249 ENRKRVVSCGAVPILMRLADAG--------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT--GSSRAVQCSLF 318 (372)
Q Consensus 249 ~~~~~i~~~g~v~~L~~ll~~~--------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~--~~~~~~~~a~~ 318 (372)
+.+..+.+.|+++.|+++++++ ...++..|+.|+..++.+..|++ .|+.+.++.++.+ .+|.+.+.++.
T Consensus 274 E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~p~Vi~~~~a 352 (461)
T KOG4199|consen 274 EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALRHSDDPLVIQEVMA 352 (461)
T ss_pred HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHHcCCChHHHHHHHH
Confidence 9999999999999999999653 35689999999999999999999 8999999998854 68899999999
Q ss_pred HHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHHHHHHhcCC
Q 017402 319 TLSCLCCCSQEICGDSRKEGVLDICMGLLEDD--NEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 319 ~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~ 369 (372)
++.-+|..+|+....+++.|+-...++.++.. ...++++|+++++++..+.
T Consensus 353 ~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 353 IISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred HHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999864 6789999999999986554
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.79 E-value=4.5e-18 Score=168.52 Aligned_cols=262 Identities=24% Similarity=0.316 Sum_probs=219.6
Q ss_pred HHHH-HHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc----------CCChhHHHHHHHHHhcCCCCcc-cccccc
Q 017402 104 ESKL-ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH----------SDGFTLQEKALSLLLNLSLDDD-NKVGLV 171 (372)
Q Consensus 104 ~~~~-~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----------~~~~~~~~~a~~~L~~l~~~~~-~~~~i~ 171 (372)
+-++ .|+..|.+++. ++++|..|.+.|++..+-++|.-. .....++..+..+|.||.+++. |+..+.
T Consensus 312 ~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 312 EHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred chhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3455 77888888887 788999999999999999988521 1234689999999999999954 566666
Q ss_pred c-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cc-hhhhccccchHHHHHHH-hhcCCchHHHHHHHHHHHhhcCC
Q 017402 172 A-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VN-KATIGDYPYAINALVSL-LQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 172 ~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~-~~~i~~~~g~i~~Lv~l-l~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
. .|++..+|..|.+...++...-+++|.||+=.. .+ +..+.+ .|-+..|+.. ++...+ ..++..+.|||||+.+
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE-~GsVtaLa~~al~~~kE-sTLKavLSALWNLSAH 468 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRE-TGSVTALAACALRNKKE-STLKAVLSALWNLSAH 468 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHh-hhhHHHHHHHHHHhccc-chHHHHHHHHhhhhhc
Confidence 5 799999999999999999999999999998543 33 444555 7888888765 445555 7899999999999985
Q ss_pred -CchhHHHHhc-CchHHHHHHHhhh--------HHHHHHHHHHHhC----CHhHHHHHHhccchHHHHHHHHhcCChhHH
Q 017402 248 -PENRKRVVSC-GAVPILMRLADAG--------LERAVEVLSILVK----CKEGREEMMRVSGCVGVFVKMLKTGSSRAV 313 (372)
Q Consensus 248 -~~~~~~i~~~-g~v~~L~~ll~~~--------~e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~ 313 (372)
.+|+..|..- |++..|+.+|.-. .|.+-.||.|++. ++..|+.+.. ..++..|+..|++.+-.+-
T Consensus 469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-~NCLq~LLQ~LKS~SLTiV 547 (2195)
T KOG2122|consen 469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR-HNCLQTLLQHLKSHSLTIV 547 (2195)
T ss_pred ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH-hhHHHHHHHHhhhcceEEe
Confidence 6899999977 9999999999321 6777788888766 5666777777 6799999999999998999
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 314 QCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 314 ~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
.+++++||||...+++.++.+|+.|+++.|..|+.+-+..+-+-++.+|++|-.++
T Consensus 548 SNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 548 SNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred ecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999987766
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.71 E-value=1.5e-16 Score=158.01 Aligned_cols=277 Identities=19% Similarity=0.219 Sum_probs=221.0
Q ss_pred hhHHHHhhccCC-ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHH----------hhcC-----CChh-HHHH
Q 017402 90 QTLISVLTSKSS-PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCL----------KIHS-----DGFT-LQEK 152 (372)
Q Consensus 90 ~~li~~L~~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL----------~~~~-----~~~~-~~~~ 152 (372)
|-|+++|.-... +.+.|.+|-.+|.|+....++.+..=.+..+++.|-++. .... ...+ -...
T Consensus 238 pLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lca 317 (2195)
T KOG2122|consen 238 PLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCA 317 (2195)
T ss_pred HHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHH
Confidence 447777765432 567899999999999977665555444444444443222 2111 1122 3458
Q ss_pred HHHHHhcCCCCccccccccccCChHHHHHHHhc-----C-------ChHHHHHHHHHHHHhcccc-cchhhhccccchHH
Q 017402 153 ALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-----G-------SPDCRAIAATIITSLAVVE-VNKATIGDYPYAIN 219 (372)
Q Consensus 153 a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-----~-------~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~ 219 (372)
|+.+|..+++++++|..+-+.|+++++.++|.- + ...+|.++..+|.||.+.+ .||..+....|+++
T Consensus 318 A~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMe 397 (2195)
T KOG2122|consen 318 ALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFME 397 (2195)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHH
Confidence 999999999999999999999999999998842 1 4678999999999999988 68888887789999
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHhhcCCCc--hhHHHHhcCchHHHHHHH-hh----hHHHHHHHHHHHhC-CHhHHHHH
Q 017402 220 ALVSLLQNGKLIREKKEAATALYALTSFPE--NRKRVVSCGAVPILMRLA-DA----GLERAVEVLSILVK-CKEGREEM 291 (372)
Q Consensus 220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~--~~~~i~~~g~v~~L~~ll-~~----~~e~a~~~L~~L~~-~~~~~~~i 291 (372)
.+|.-|.+..+ ++..-.+.+|+||++..+ .+..+-+.|-|..|+... .. .....+.+||||+. +.+++..|
T Consensus 398 avVAQL~s~pe-eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i 476 (2195)
T KOG2122|consen 398 AVVAQLISAPE-ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI 476 (2195)
T ss_pred HHHHHHhcChH-HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence 99999999887 889999999999999654 445555779999988766 21 25678999999998 57889999
Q ss_pred HhccchHHHHHHHHhcC----ChhHHHhHHHHHHHHhcC---CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402 292 MRVSGCVGVFVKMLKTG----SSRAVQCSLFTLSCLCCC---SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQT 364 (372)
Q Consensus 292 ~~~~g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~ 364 (372)
+...|++..||.+|... .-.+.+.|-++|.|++.+ .+++|+.+++.+++..|+..|++.+-.+-.++++.|.+
T Consensus 477 CaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWN 556 (2195)
T KOG2122|consen 477 CAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWN 556 (2195)
T ss_pred hcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhh
Confidence 99999999999999764 335678999999998765 46899999999999999999999999999999999998
Q ss_pred Hhc
Q 017402 365 LSG 367 (372)
Q Consensus 365 l~~ 367 (372)
|+-
T Consensus 557 LSA 559 (2195)
T KOG2122|consen 557 LSA 559 (2195)
T ss_pred hhc
Confidence 864
No 16
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.70 E-value=5.4e-18 Score=117.93 Aligned_cols=71 Identities=49% Similarity=0.938 Sum_probs=61.2
Q ss_pred CCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP 76 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~ 76 (372)
+|++|.||||+++|.|||++++||+|++.||++|+..+..+||.|+++++ ..++.+|..++..|+.|+..+
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~-~~~l~pn~~Lk~~I~~~~~~~ 71 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS-ESDLIPNRALKSAIEEWCAEN 71 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S-GGGSEE-HHHHHHHHHHHHHC
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC-cccceECHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999999999987889999999999 889999999999999998764
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.69 E-value=3.2e-15 Score=129.41 Aligned_cols=225 Identities=17% Similarity=0.154 Sum_probs=186.2
Q ss_pred HhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc
Q 017402 127 LTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV 206 (372)
Q Consensus 127 i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~ 206 (372)
+.+.+.++.|+.+|+. +.++.+++.++.++.+.+..+.++..+.+.|+++.+..+|.++++.++..|.++|.|++.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~-t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLES-TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 3567788999999985 368999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccccchHHHHHHHhhcC-CchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHH
Q 017402 207 NKATIGDYPYAINALVSLLQNG-KLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSIL 281 (372)
Q Consensus 207 ~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L 281 (372)
++..|.. .|+.+++.+.+. -+..++..++++|.||+..++....+.. .++.++.+|.+| +..++.+|.||
T Consensus 87 n~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 9998744 577777766554 2338899999999999988888777654 799999999766 67899999999
Q ss_pred hCCHhHHHHHHhccchHHHHHHHHhcC-ChhHHHhHHHHHHHHhcCCH--------------HHHHHHHhcC-hhHHHHH
Q 017402 282 VKCKEGREEMMRVSGCVGVFVKMLKTG-SSRAVQCSLFTLSCLCCCSQ--------------EICGDSRKEG-VLDICMG 345 (372)
Q Consensus 282 ~~~~~~~~~i~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~--------------~~~~~~~~~g-~~~~l~~ 345 (372)
+.++.....++. .++...++.++... +..+...++..+.+|..+-. ..-..+.+.+ ..+.|..
T Consensus 162 S~np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 162 SENPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred ccCHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 999999999998 67999999999774 67788999999999965411 1112233344 6777888
Q ss_pred HhhcccHHHHHHH
Q 017402 346 LLEDDNEKVRRNA 358 (372)
Q Consensus 346 ll~~~~~~v~~~a 358 (372)
+..+.+++||++.
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 8888888888763
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.68 E-value=4e-15 Score=128.86 Aligned_cols=189 Identities=20% Similarity=0.253 Sum_probs=163.2
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
.+.++.+|+.. .++..+..++.++.+.+. .+.++..+.+.|+++.+..+|. +.++.+++.|+.+|.|++.+.+++.
T Consensus 14 l~~Ll~lL~~t-~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~--~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 14 LQKLLCLLEST-EDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLN--DPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHhcC-CChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcC--CCChHHHHHHHHHHHhcCCChhhHH
Confidence 45688888764 689999999999999887 5679999999999999999999 8899999999999999999999988
Q ss_pred cccccCChHHHHHHHhcC--ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402 169 GLVAEGAVSRVVAALRFG--SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~--~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 246 (372)
.|. ..++.+++.+.+. +.+++..+.++|.+|+..+++...+. +.++.++.+|.+++. .++..++++|.|||.
T Consensus 90 ~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~-~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 90 QIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSE-KTKVQVLKVLVNLSE 163 (254)
T ss_pred HHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCCh-HHHHHHHHHHHHhcc
Confidence 764 3688888876553 78899999999999998888877764 479999999999988 999999999999999
Q ss_pred CCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhH
Q 017402 247 FPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEG 287 (372)
Q Consensus 247 ~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~ 287 (372)
++.....++.++++..++.+++.. ...++.+..|+..+-..
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999654 34577777888765433
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.62 E-value=2.2e-13 Score=130.89 Aligned_cols=268 Identities=15% Similarity=0.188 Sum_probs=216.7
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
+.+...|.++ ++.+|.-+++.|.+++.++....+.+.+.+.++.++..|. +.+.++...|+.+|.+++.++.....
T Consensus 80 ~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~--~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 80 PFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR--DPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc--CCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 3466667765 7899999999999999877766777888999999999999 89999999999999999998888778
Q ss_pred ccccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc-chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV-NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
+...+.+..|..++...+..+|.....++.+++...+ ....+.. .|+++.+++.+++++. -++.+|+..|..|+..+
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~dDi-Lvqlnalell~~La~~~ 233 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSDDI-LVQLNALELLSELAETP 233 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCccH-HHHHHHHHHHHHHHcCh
Confidence 8888889999999988888999999999999987764 4444555 7999999999999554 88999999999999999
Q ss_pred chhHHHHhcCchHHHHHHHhhh----------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHH
Q 017402 249 ENRKRVVSCGAVPILMRLADAG----------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLF 318 (372)
Q Consensus 249 ~~~~~i~~~g~v~~L~~ll~~~----------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~ 318 (372)
.+...+.+.|+++.|..++... ....+...++++.. .....+......+..|.+++.+.++..+..|..
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFD 312 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 9999999999999999999433 12234556666664 222222222445667777777889999999999
Q ss_pred HHHHHhcCCHHHHHHH-HhcC-----hhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 319 TLSCLCCCSQEICGDS-RKEG-----VLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 319 ~L~~l~~~~~~~~~~~-~~~g-----~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
++..++.. .+.+..+ ...| ++..+.....++..++|..+..+|..+
T Consensus 313 tlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 313 TLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 99999976 7777766 4443 566666666778889999999999877
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.61 E-value=9.1e-14 Score=132.75 Aligned_cols=277 Identities=17% Similarity=0.147 Sum_probs=213.9
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChH--HHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc--
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSA--SRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD-- 164 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~-- 164 (372)
.+.++.+|.+. ..+++.+|..+|+||..++.. |+-.|.+.|+|+.++++|+. ..|.++++....+|.||+..|
T Consensus 277 I~kLv~Ll~~~--~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~-t~D~ev~e~iTg~LWNLSS~D~l 353 (717)
T KOG1048|consen 277 IPKLVALLDHR--NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRH-TQDDEVRELITGILWNLSSNDAL 353 (717)
T ss_pred HHHHHHHhcCC--cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHh-hcchHHHHHHHHHHhcccchhHH
Confidence 36799999887 889999999999999987665 99999999999999999995 367888888888888887542
Q ss_pred -----------------------------------------------------cccccccc-cCChHHHHHHHhc-----
Q 017402 165 -----------------------------------------------------DNKVGLVA-EGAVSRVVAALRF----- 185 (372)
Q Consensus 165 -----------------------------------------------------~~~~~i~~-~g~i~~lv~~L~~----- 185 (372)
+.++.+.+ .|.|+.|+..+.+
T Consensus 354 K~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 354 KMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 22345555 6889999988863
Q ss_pred -CChHHHHHHHHHHHHhccccc--------------------------------chhh---------hcc----------
Q 017402 186 -GSPDCRAIAATIITSLAVVEV--------------------------------NKAT---------IGD---------- 213 (372)
Q Consensus 186 -~~~~~~~~a~~~L~~ls~~~~--------------------------------~~~~---------i~~---------- 213 (372)
-|....+++.-+|.||+---+ -+.+ +-+
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence 366777899999999873211 0000 000
Q ss_pred --ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc-----hhHHH-HhcCchHHHHHHHhhh----HHHHHHHHHHH
Q 017402 214 --YPYAINALVSLLQNGKLIREKKEAATALYALTSFPE-----NRKRV-VSCGAVPILMRLADAG----LERAVEVLSIL 281 (372)
Q Consensus 214 --~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~-----~~~~i-~~~g~v~~L~~ll~~~----~e~a~~~L~~L 281 (372)
...+|..=..++.......+.+.++++|-||+...- .+..+ .+..+.++|+++|+.+ ...+..+|.||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 012333434444433333899999999999986331 44555 5778999999999655 67889999999
Q ss_pred hCCHhHHHHHHhccchHHHHHHHHhcCC------hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc-cHHH
Q 017402 282 VKCKEGREEMMRVSGCVGVFVKMLKTGS------SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD-NEKV 354 (372)
Q Consensus 282 ~~~~~~~~~i~~~~g~i~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~-~~~v 354 (372)
+.+..++..|.. ++++.|++.|.... ++.-..++.+|+++...+..+.+.+.+.++++.|+.+..+. ++++
T Consensus 594 s~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~ 671 (717)
T KOG1048|consen 594 SRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKE 671 (717)
T ss_pred ccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHH
Confidence 999999998885 68999999996532 46667899999999988899999999999999999999975 6799
Q ss_pred HHHHHHHHHHHhcCCC
Q 017402 355 RRNANNLIQTLSGNPS 370 (372)
Q Consensus 355 ~~~a~~~L~~l~~~~~ 370 (372)
-++|..+|..|..++.
T Consensus 672 ~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 672 FKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988876554
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.61 E-value=6.9e-16 Score=104.99 Aligned_cols=63 Identities=56% Similarity=0.985 Sum_probs=59.0
Q ss_pred CccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHH
Q 017402 8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF 72 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~ 72 (372)
+|.||||+++|.+||+++|||+||+.||.+|+.. ..+||.|+++++ ..++.+|..+++.++.|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~-~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLT-HEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC-hhhceeCHHHHHHHHhC
Confidence 5789999999999999999999999999999987 678999999998 88999999999999876
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.54 E-value=8.7e-13 Score=117.50 Aligned_cols=264 Identities=13% Similarity=0.109 Sum_probs=212.2
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhh-cCC----ChhHHHHHHHHHhcCCCC-ccccccccccCC
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKI-HSD----GFTLQEKALSLLLNLSLD-DDNKVGLVAEGA 175 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~----~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~ 175 (372)
+.++-.+..++|.|.|.++.++|..+.+.||-..++++|+. ++. +.+....+...|.|...+ ++.+..+.+.|+
T Consensus 100 d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gV 179 (604)
T KOG4500|consen 100 DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGV 179 (604)
T ss_pred cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhccc
Confidence 67888999999999999999999999999999999999974 112 236778888899996666 777889999999
Q ss_pred hHHHHHHHhc--CChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhH
Q 017402 176 VSRVVAALRF--GSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRK 252 (372)
Q Consensus 176 i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 252 (372)
++.|...+.- ++....+......++|.+.. ++-............|+.++.+...++..+.....|...+.++..+-
T Consensus 180 l~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl 259 (604)
T KOG4500|consen 180 LNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKL 259 (604)
T ss_pred HHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceee
Confidence 9999988854 45666676777777776544 33333333368888999999876555888899999999999999999
Q ss_pred HHHhcCchHHHHHHHhh-h----HH-------HHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHH
Q 017402 253 RVVSCGAVPILMRLADA-G----LE-------RAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTL 320 (372)
Q Consensus 253 ~i~~~g~v~~L~~ll~~-~----~e-------~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L 320 (372)
.+++.|.+..++++++. . .+ .+.....-|..+++..+.+...+..+..+++-+.+.+......+.-++
T Consensus 260 ~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~Lai 339 (604)
T KOG4500|consen 260 SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAI 339 (604)
T ss_pred ehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999943 1 22 244445555667777777877555888999999888889999999999
Q ss_pred HHHhcCCHHHHHHHHhcChhHHHHHHhh-----cccHHHHHHHHHHHHHHh
Q 017402 321 SCLCCCSQEICGDSRKEGVLDICMGLLE-----DDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 321 ~~l~~~~~~~~~~~~~~g~~~~l~~ll~-----~~~~~v~~~a~~~L~~l~ 366 (372)
.|++.. .+.+..+++.|.+..|++++. +|+.+++.++..+||+|-
T Consensus 340 gNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 340 GNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred Hhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 999987 888899999999999999884 367888899999999874
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.4e-12 Score=117.75 Aligned_cols=248 Identities=19% Similarity=0.156 Sum_probs=199.5
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV 171 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 171 (372)
|+..|..+ +.+...-....|.+|+..++ |+..|.+.|+|+.|++++. ..+++++...+..|.|++++...+..++
T Consensus 309 LVKaLdr~--n~~Ll~lv~~FLkKLSIf~e-NK~~M~~~~iveKL~klfp--~~h~dL~~~tl~LlfNlSFD~glr~KMv 383 (791)
T KOG1222|consen 309 LVKALDRS--NSSLLTLVIKFLKKLSIFDE-NKIVMEQNGIVEKLLKLFP--IQHPDLRKATLMLLFNLSFDSGLRPKMV 383 (791)
T ss_pred HHHHHccc--chHHHHHHHHHHHHhhhhcc-chHHHHhccHHHHHHHhcC--CCCHHHHHHHHHHhhhccccccccHHHh
Confidence 45555554 34445556677888888655 9999999999999999999 8999999999999999999999999999
Q ss_pred ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh
Q 017402 172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR 251 (372)
Q Consensus 172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 251 (372)
+.|.+|.++.+|.+++ -+..|...++.+|.+++.+.++.. ..+|+.+++.+-++...++-......-.|||.+..|.
T Consensus 384 ~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNa 460 (791)
T KOG1222|consen 384 NGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNA 460 (791)
T ss_pred hccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccc
Confidence 9999999999996543 334578899999999999999888 7999999999887765244433333445999999999
Q ss_pred HHHHhcCchHHHHHHH-hhhHHHHHHHHHHHhCCHhH-HHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCH
Q 017402 252 KRVVSCGAVPILMRLA-DAGLERAVEVLSILVKCKEG-REEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQ 328 (372)
Q Consensus 252 ~~i~~~g~v~~L~~ll-~~~~e~a~~~L~~L~~~~~~-~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~ 328 (372)
+.+++-.++..|++.. ....-..+.++.|++.++.. +..++. .+..|...++. .++..-..++++|.++...+.
T Consensus 461 QlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid---yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl 537 (791)
T KOG1222|consen 461 QLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID---YVGDLAGIAKNDNSESFGLECLGTLANLKVTDL 537 (791)
T ss_pred eEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH---HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence 9999987888888766 33345678999999998774 445555 57778777765 456667788999999988767
Q ss_pred HHHHHHHhcChhHHHHHHhhcc
Q 017402 329 EICGDSRKEGVLDICMGLLEDD 350 (372)
Q Consensus 329 ~~~~~~~~~g~~~~l~~ll~~~ 350 (372)
+-.+.+.+...+|.+-..++.|
T Consensus 538 dw~~ilq~~~LvPw~k~~L~pg 559 (791)
T KOG1222|consen 538 DWAKILQSENLVPWMKTQLQPG 559 (791)
T ss_pred CHHHHHhhccccHHHHHhhcCC
Confidence 7888888899999999988875
No 24
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.47 E-value=2e-14 Score=87.73 Aligned_cols=39 Identities=38% Similarity=0.833 Sum_probs=31.2
Q ss_pred ccCCcccCCCceecCCchHhhHHHHHHHHhcCC---CCCCCC
Q 017402 11 CPISLEIMSDPVILSSGHTFDRASIQRWLDSGH---RTCPIT 49 (372)
Q Consensus 11 C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~---~~CP~c 49 (372)
||||+++|++||+++|||+||+.||.+||.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999997532 479987
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.37 E-value=1.3e-10 Score=111.86 Aligned_cols=236 Identities=19% Similarity=0.167 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHH
Q 017402 104 ESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAAL 183 (372)
Q Consensus 104 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L 183 (372)
+.+.+++..+..-....+ .- +..-.+.++..|. +.+.+....++.+|..+......... ..+..+.|...|
T Consensus 16 ~~~~~~L~~l~~~~~~~~-~l----~~~~~~~lf~~L~--~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL 86 (503)
T PF10508_consen 16 AERLEALPELKTELSSSP-FL----ERLPEPVLFDCLN--TSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGL 86 (503)
T ss_pred cchHHHHHHHHHHHhhhh-HH----HhchHHHHHHHHh--hcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHh
Confidence 445667777766444332 11 2222233888898 67778888888888887654332222 567889999999
Q ss_pred hcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHH
Q 017402 184 RFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPIL 263 (372)
Q Consensus 184 ~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L 263 (372)
.++++.+|..+++.|.+++.+.+....+....++++.++.++.+++. .+.+.|..+|.+++.++.+...++..+.++.|
T Consensus 87 ~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L 165 (503)
T PF10508_consen 87 THPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLASHPEGLEQLFDSNLLSKL 165 (503)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhCCchhHHHHhCcchHHHH
Confidence 99999999999999999987776544444337999999999999988 99999999999999999888888899999999
Q ss_pred HHHHhh-h---HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcCh
Q 017402 264 MRLADA-G---LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGV 339 (372)
Q Consensus 264 ~~ll~~-~---~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 339 (372)
..++.. . +-++..++.+++...+.....+...|.++.++..+++.+.-++.+|+.+|..++. .+.+.+-+.+.|+
T Consensus 166 ~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi 244 (503)
T PF10508_consen 166 KSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGI 244 (503)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCH
Confidence 999955 2 6678899999988766655555558999999999999888899999999999999 5899999999999
Q ss_pred hHHHHHHhhcc
Q 017402 340 LDICMGLLEDD 350 (372)
Q Consensus 340 ~~~l~~ll~~~ 350 (372)
++.|..++.+.
T Consensus 245 ~~~L~~~l~~~ 255 (503)
T PF10508_consen 245 FDKLSNLLQDS 255 (503)
T ss_pred HHHHHHHHhcc
Confidence 99999999764
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.36 E-value=4.3e-12 Score=98.27 Aligned_cols=117 Identities=26% Similarity=0.291 Sum_probs=104.8
Q ss_pred HHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 017402 126 KLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV 204 (372)
Q Consensus 126 ~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~ 204 (372)
.+++.|+++.++++|. +.+..++..++.+|.+++.+ ++....+.+.|+++.++.+|.++++.++..++++|.+++..
T Consensus 2 ~~~~~~~i~~l~~~l~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLS--SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHH--cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 4678999999999999 77899999999999999988 77788888899999999999999999999999999999987
Q ss_pred cc-chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402 205 EV-NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246 (372)
Q Consensus 205 ~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 246 (372)
.. ....+.. .|+++.|++++.+.+. .+++.++++|.+|+.
T Consensus 80 ~~~~~~~~~~-~g~l~~l~~~l~~~~~-~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLE-AGGVPKLVNLLDSSNE-DIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHH-CCChHHHHHHHhcCCH-HHHHHHHHHHHHhhC
Confidence 74 4455555 6999999999998877 999999999999874
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.34 E-value=4.9e-11 Score=92.26 Aligned_cols=113 Identities=22% Similarity=0.351 Sum_probs=103.4
Q ss_pred HHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402 253 RVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS 327 (372)
Q Consensus 253 ~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 327 (372)
.+++.|+++.|++++.++ ++.++.+|.+++.. ++....+.. .|+++.++.++.+.++.++..|+++|.+++...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 467889999999999655 78899999999998 777888887 799999999999999999999999999999987
Q ss_pred HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 328 QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 328 ~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
+.....+.+.|+++.++.++.+++.++++.|.++|.+|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 788889999999999999999999999999999999874
No 28
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.32 E-value=2.9e-10 Score=101.68 Aligned_cols=272 Identities=14% Similarity=0.103 Sum_probs=207.8
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc---CC---ChhHHHHHHHHHhcCCCCc
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH---SD---GFTLQEKALSLLLNLSLDD 164 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~---~~~~~~~a~~~L~~l~~~~ 164 (372)
.++++|.+. ..++.+.-.+..+...+.. +..+-.+++.|.+..++++++.. +. ....-..++....-+..++
T Consensus 227 ~l~~ll~~~-v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD 304 (604)
T KOG4500|consen 227 MLLQLLPSM-VREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD 304 (604)
T ss_pred HHHHHHHHh-hccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc
Confidence 356666654 4667777788889998874 45899999999999999999741 11 1123344555555666777
Q ss_pred cccccccccC-ChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC----chHHHHHHHH
Q 017402 165 DNKVGLVAEG-AVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK----LIREKKEAAT 239 (372)
Q Consensus 165 ~~~~~i~~~g-~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~----~~~~~~~a~~ 239 (372)
+....+...+ .++.++.++.+.|.+....+.-+++|++..++++..+++ .|.+..|++++...+ +...+-.++.
T Consensus 305 eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~ls 383 (604)
T KOG4500|consen 305 ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLS 383 (604)
T ss_pred hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence 7766666665 899999999999999999999999999999999999999 799999999986522 2367788999
Q ss_pred HHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHh-HHHHHHhccchHHHHHHHHhcCChh-HH
Q 017402 240 ALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKE-GREEMMRVSGCVGVFVKMLKTGSSR-AV 313 (372)
Q Consensus 240 aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~L~~ll~~~~~~-~~ 313 (372)
+|+|+.....|+.+++.+|.++.++.++... .-+.+..++.+....+ -..++..+...++.|++--++.+-. +.
T Consensus 384 ALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~ 463 (604)
T KOG4500|consen 384 ALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVA 463 (604)
T ss_pred HHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhh
Confidence 9999999999999999999999999998543 5566666666665444 3445555556677777766554433 45
Q ss_pred HhHHHHHHHHhcC--CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 314 QCSLFTLSCLCCC--SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 314 ~~a~~~L~~l~~~--~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
-...+.|..+-++ ..+....+.+.|+++.++..+...+-..+..|.-+|-.+
T Consensus 464 gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 464 GESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLST 517 (604)
T ss_pred hhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence 5667777777777 346677788899999999999999988888887776543
No 29
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.32 E-value=1.4e-12 Score=105.36 Aligned_cols=59 Identities=31% Similarity=0.639 Sum_probs=49.8
Q ss_pred CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhc---------------CCCCCCCCCCCCCCCCCCCccH
Q 017402 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS---------------GHRTCPITKLPLPDQPSLIPNH 63 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~---------------~~~~CP~c~~~~~~~~~~~~n~ 63 (372)
+..+++.||||++.+++||+++|||.||..||.+|+.. +...||.|+..++ ..++.|..
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is-~~~LvPiy 87 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS-EATLVPIY 87 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC-hhcEEEee
Confidence 34577999999999999999999999999999999842 2357999999998 67776654
No 30
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=2.8e-12 Score=116.47 Aligned_cols=71 Identities=23% Similarity=0.470 Sum_probs=63.9
Q ss_pred CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 75 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~ 75 (372)
..++..+.|+||.++|.+||+++|||+||..||..|+.. ...||.|+..+. ...+.+|..+..+++.|...
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~-~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ-ESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccc-cccCccchHHHHHHHHHHHh
Confidence 357788999999999999999999999999999999975 457999999998 77899999999999999763
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.28 E-value=5.4e-10 Score=101.40 Aligned_cols=240 Identities=22% Similarity=0.143 Sum_probs=167.2
Q ss_pred hHHHHHHhhc---CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc-ccc------cCChHHHHHHHhcCChHH
Q 017402 121 SASRRKLTES---GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG-LVA------EGAVSRVVAALRFGSPDC 190 (372)
Q Consensus 121 ~~~~~~i~~~---g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-i~~------~g~i~~lv~~L~~~~~~~ 190 (372)
.+.|..+.+. +....++.+|...+.+.++....+..+..+..++..+.. +.. .....++++++.++|..+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i 121 (312)
T PF03224_consen 42 KEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFI 121 (312)
T ss_dssp H-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHH
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHH
Confidence 3345555554 347778888885336788999999999997766554443 332 136888999998999999
Q ss_pred HHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc---hHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHH
Q 017402 191 RAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL---IREKKEAATALYALTSFPENRKRVVSCGAVPILMRLA 267 (372)
Q Consensus 191 ~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~---~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll 267 (372)
+..|+..|..+.........-.. .+.++.++..+++... .+....|+.+|.+|...++.|..+.+.|+++.++.++
T Consensus 122 ~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 122 QLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHH
Confidence 99999999999877655544333 4788889888886432 2566889999999999999999999999999999999
Q ss_pred ------hhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCHH-HHHHH
Q 017402 268 ------DAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQE-ICGDS 334 (372)
Q Consensus 268 ------~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~ 334 (372)
.+. .=.++.+++.|+..++....+.. .+.++.|+++++. ..+++.+-++.+|.|+....++ +...|
T Consensus 201 ~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~m 279 (312)
T PF03224_consen 201 RKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELM 279 (312)
T ss_dssp H---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred HhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHH
Confidence 222 34588999999999999999988 5699999999976 6788899999999999877553 88889
Q ss_pred HhcChhHHHHHHhhc--ccHHHHHHHHHHH
Q 017402 335 RKEGVLDICMGLLED--DNEKVRRNANNLI 362 (372)
Q Consensus 335 ~~~g~~~~l~~ll~~--~~~~v~~~a~~~L 362 (372)
+..|+++.+-.+... +++++.+--..+-
T Consensus 280 v~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 280 VLCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred HHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999988888777764 5777776655543
No 32
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.4e-09 Score=103.83 Aligned_cols=268 Identities=17% Similarity=0.221 Sum_probs=202.6
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc----
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD---- 165 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~---- 165 (372)
+.|...+.+. +-.+.|+.|++.|..+++ .+|..++.. |++.|+..|..+..++++...++.++.++..+++
T Consensus 25 ~kLcDRvess-TL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 25 EKLCDRVESS-TLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHhhc-cchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 4566666654 578889999999999998 478777665 5899999999777899999999999999877653
Q ss_pred ---cc----------cccc-ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc--cchhhhccccchHHHHHHHhhcCC
Q 017402 166 ---NK----------VGLV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE--VNKATIGDYPYAINALVSLLQNGK 229 (372)
Q Consensus 166 ---~~----------~~i~-~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~ 229 (372)
.+ +.+. ..+.|..++..+...|..+|.++...|.++-... +.+..+...+-+|..|+.+|++..
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 22 1222 4688999999999999999999999999997665 456666555789999999999998
Q ss_pred chHHHHHHHHHHHhhcCCCchhHHHHhc-CchHHHHHHHhh------h--HHHHHHHHHHHhCCHhHHHHHHhccchHHH
Q 017402 230 LIREKKEAATALYALTSFPENRKRVVSC-GAVPILMRLADA------G--LERAVEVLSILVKCKEGREEMMRVSGCVGV 300 (372)
Q Consensus 230 ~~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~L~~ll~~------~--~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~ 300 (372)
+ .++..|+..|..|+......++++.- ++...|..++.. + .+.|+.+|-||-++....+.+..+.+.++.
T Consensus 180 E-~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 180 E-PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR 258 (970)
T ss_pred h-hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence 8 99999999999999988888877755 788999999932 2 789999999999976655555554899999
Q ss_pred HHHHHhc---CChh------HH----HhHHHHHHHHhcCC------HHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHH
Q 017402 301 FVKMLKT---GSSR------AV----QCSLFTLSCLCCCS------QEICGDSRKEGVLDICMGLLEDD--NEKVRRNAN 359 (372)
Q Consensus 301 L~~ll~~---~~~~------~~----~~a~~~L~~l~~~~------~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~ 359 (372)
|.++|.. ++.. -| -.|+.++..+..-+ ..+.+.|.+.+++..|..++-+. ..+++..+.
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi 338 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI 338 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence 9988854 3311 11 24445555554321 13445778888888888877664 345555544
Q ss_pred HHHH
Q 017402 360 NLIQ 363 (372)
Q Consensus 360 ~~L~ 363 (372)
-.+.
T Consensus 339 itvA 342 (970)
T KOG0946|consen 339 ITVA 342 (970)
T ss_pred HHHH
Confidence 4443
No 33
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=4.9e-10 Score=101.57 Aligned_cols=247 Identities=15% Similarity=0.170 Sum_probs=194.8
Q ss_pred HHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcC
Q 017402 107 LESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFG 186 (372)
Q Consensus 107 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~ 186 (372)
.-|+-.|.|++. +...-..|+..++|..||+.|. ..+.++.......|..|+.-.+|+..+.+.|.+..|++++...
T Consensus 281 rva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLd--r~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 281 RVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALD--RSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHc--ccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 446677889997 5557888899999999999999 6788999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHH
Q 017402 187 SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL 266 (372)
Q Consensus 187 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~l 266 (372)
+++.+......|+|+|.+...+.+++. .|.+|.|+.++.+... ..-|+..|+.++.++..+..+.....|+.+++.
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~-~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVN-GGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhh-ccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 7999999999988644 566889999999999999999999999999998
Q ss_pred Hhhh--HH---HHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhH
Q 017402 267 ADAG--LE---RAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLD 341 (372)
Q Consensus 267 l~~~--~e---~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~ 341 (372)
+-++ .+ ..++.--|||.+..+.+-+++ +.++..|.+.--..... .-...+.+++.+....+..+++ .+.
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvce-GqgL~~LM~ra~k~~D~---lLmK~vRniSqHeg~tqn~Fid--yvg 507 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCE-GQGLDLLMERAIKSRDL---LLMKVVRNISQHEGATQNMFID--YVG 507 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhccccceEEec-CcchHHHHHHHhcccch---HHHHHHHHhhhccchHHHHHHH--HHH
Confidence 8443 22 233344689998888888888 67888877654322212 2356778888885556666655 345
Q ss_pred HHHHHhhcccHH-HHHHHHHHHHHHh
Q 017402 342 ICMGLLEDDNEK-VRRNANNLIQTLS 366 (372)
Q Consensus 342 ~l~~ll~~~~~~-v~~~a~~~L~~l~ 366 (372)
-|..++++++++ .--.+.+.|.+|.
T Consensus 508 dLa~i~~nd~~E~F~~EClGtlanL~ 533 (791)
T KOG1222|consen 508 DLAGIAKNDNSESFGLECLGTLANLK 533 (791)
T ss_pred HHHHHhhcCchHHHHHHHHHHHhhcc
Confidence 555666655443 3445555555543
No 34
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.18 E-value=5.2e-09 Score=96.80 Aligned_cols=272 Identities=14% Similarity=0.064 Sum_probs=193.6
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
..++.+|..+ +.-+...|+..|..+...+..+.......-....+...|++ ..+...+..++.+|..|...++.|..
T Consensus 104 ~~fl~lL~~~--d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~-~~~~~~~~~~v~~L~~LL~~~~~R~~ 180 (429)
T cd00256 104 EPFFNLLNRQ--DQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNN-ITNNDYVQTAARCLQMLLRVDEYRFA 180 (429)
T ss_pred HHHHHHHcCC--chhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhc-cCCcchHHHHHHHHHHHhCCchHHHH
Confidence 4466777654 66778889999998876544221111000122334444542 13577889999999999999999999
Q ss_pred ccccCChHHHHHHHhcC--ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 170 LVAEGAVSRVVAALRFG--SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~--~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
+.+.++++.|+.+|+.. +.+.+-.++-.++-|+..++....... .+.|+.|+++++...-..+..-++.+|.||...
T Consensus 181 f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 181 FVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 99999999999999763 567788899999999988876666655 699999999999754338999999999999874
Q ss_pred C-------chhHHHHhcCchHHHHHHHhhh---H-----------HHHHHHHHHHhCCH---------------------
Q 017402 248 P-------ENRKRVVSCGAVPILMRLADAG---L-----------ERAVEVLSILVKCK--------------------- 285 (372)
Q Consensus 248 ~-------~~~~~i~~~g~v~~L~~ll~~~---~-----------e~a~~~L~~L~~~~--------------------- 285 (372)
+ .....+++.|+++ ++..|... . +..-.-+..++..+
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred ccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 3 2345666776655 44444211 1 11112222233222
Q ss_pred ---hHHHHHHhcc-chHHHHHHHHh-cCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHH
Q 017402 286 ---EGREEMMRVS-GCVGVFVKMLK-TGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANN 360 (372)
Q Consensus 286 ---~~~~~i~~~~-g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~ 360 (372)
++...+-+.+ ..+..|+++|. +.++....-|+.=+..++.+.|+.+..+-+.|+=+.+++++.+.+++||..|..
T Consensus 339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~ 418 (429)
T cd00256 339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALL 418 (429)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 2333344422 24688999995 356677778888899999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 017402 361 LIQTLS 366 (372)
Q Consensus 361 ~L~~l~ 366 (372)
+++.|-
T Consensus 419 avQklm 424 (429)
T cd00256 419 AVQKLM 424 (429)
T ss_pred HHHHHH
Confidence 998663
No 35
>PRK09687 putative lyase; Provisional
Probab=99.17 E-value=5e-09 Score=93.00 Aligned_cols=216 Identities=16% Similarity=0.077 Sum_probs=138.2
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV 171 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 171 (372)
+..++.+. ++.+|..|++.|..+-.... . ....++.|..++.+ +.++.++..|+.+|.++.......
T Consensus 59 l~~ll~~~--d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~~~~~~~~~---- 125 (280)
T PRK09687 59 AIELCSSK--NPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALE-DKSACVRASAINATGHRCKKNPLY---- 125 (280)
T ss_pred HHHHHhCC--CHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhc-CCCHHHHHHHHHHHhccccccccc----
Confidence 44444433 67777777777777654221 1 11245666655332 567778888888888775332211
Q ss_pred ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh
Q 017402 172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR 251 (372)
Q Consensus 172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 251 (372)
....++.+...+.+++..+|..++++|..+ .. ..+++.|+.++.+.+. .++..|+.+|..+...++
T Consensus 126 ~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~-~~ai~~L~~~L~d~~~-~VR~~A~~aLg~~~~~~~-- 191 (280)
T PRK09687 126 SPKIVEQSQITAFDKSTNVRFAVAFALSVI----------ND-EAAIPLLINLLKDPNG-DVRNWAAFALNSNKYDNP-- 191 (280)
T ss_pred chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CC-HHHHHHHHHHhcCCCH-HHHHHHHHHHhcCCCCCH--
Confidence 123455566666777778888888877543 22 3578888888887777 888888888887732211
Q ss_pred HHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402 252 KRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS 327 (372)
Q Consensus 252 ~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 327 (372)
.+++.|+.+|.+. +..|+..|..+-. ..+++.|++.+.+++ ++..|+.+|..+-..
T Consensus 192 ------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 192 ------DIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK- 251 (280)
T ss_pred ------HHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-
Confidence 3556677777443 4456655555322 457888888887654 455666666665431
Q ss_pred HHHHHHHHhcChhHHHHHHhh-cccHHHHHHHHHHHHH
Q 017402 328 QEICGDSRKEGVLDICMGLLE-DDNEKVRRNANNLIQT 364 (372)
Q Consensus 328 ~~~~~~~~~~g~~~~l~~ll~-~~~~~v~~~a~~~L~~ 364 (372)
-.++.|..+++ +.+.+++.+|.++|+.
T Consensus 252 ----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 ----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 36899999997 7799999999998864
No 36
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.16 E-value=1.5e-11 Score=74.29 Aligned_cols=38 Identities=37% Similarity=0.963 Sum_probs=33.2
Q ss_pred ccCCcccCCCc-eecCCchHhhHHHHHHHHhcCCCCCCCC
Q 017402 11 CPISLEIMSDP-VILSSGHTFDRASIQRWLDSGHRTCPIT 49 (372)
Q Consensus 11 C~ic~~~~~~P-v~~~cgh~~c~~ci~~~~~~~~~~CP~c 49 (372)
||||.+.+.+| +.++|||+||+.|+.+|+.. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999987 6789987
No 37
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.11 E-value=1.7e-09 Score=98.14 Aligned_cols=219 Identities=17% Similarity=0.191 Sum_probs=157.4
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc------CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES------GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~------g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 165 (372)
++.+|+.-+++++.....+..+..+..+++...+.+.+. ..+..+++++. .++..++..|+.+|..+....+
T Consensus 60 ~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~--~~D~~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 60 FLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD--RNDSFIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp --HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S---SSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc--CCCHHHHHHHHHHHHHHHHcCC
Confidence 455555544578889999999999999888777777652 25777888777 6789999999999999876654
Q ss_pred ccccccccCChHHHHHHHhc----CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHh------hcCCchHHHH
Q 017402 166 NKVGLVAEGAVSRVVAALRF----GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL------QNGKLIREKK 235 (372)
Q Consensus 166 ~~~~i~~~g~i~~lv~~L~~----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll------~~~~~~~~~~ 235 (372)
.+..-...+.++.++.+|++ ++.+.+..++..|.+|...+++|..+.+ .|+++.|++++ .+....+++=
T Consensus 138 ~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 138 KRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp T--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 44432225778888888875 3456778899999999999999999999 79999999999 3333357888
Q ss_pred HHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHh--HHHHHHhccchHHHHHHHHhc-
Q 017402 236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKE--GREEMMRVSGCVGVFVKMLKT- 307 (372)
Q Consensus 236 ~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~--~~~~i~~~~g~i~~L~~ll~~- 307 (372)
+++.++|-|+.+++....+.+.+.|+.|++++... ...+++++.||...+. ....++. .|+++.+-.+..+
T Consensus 217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-HHHHHHHHHSS-
T ss_pred HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-ccHHHHHHHHhcCC
Confidence 99999999999999999999999999999999655 4458999999999776 6667766 4455555444433
Q ss_pred -CChhHHH
Q 017402 308 -GSSRAVQ 314 (372)
Q Consensus 308 -~~~~~~~ 314 (372)
.++++.+
T Consensus 296 ~~Dedl~e 303 (312)
T PF03224_consen 296 WSDEDLTE 303 (312)
T ss_dssp -SSHHHHH
T ss_pred CCCHHHHH
Confidence 4555543
No 38
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.09 E-value=3.7e-11 Score=103.28 Aligned_cols=67 Identities=24% Similarity=0.479 Sum_probs=60.3
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR 74 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~ 74 (372)
.+.++|-||.++|+-|++++|||+||..||..++.. .+.||.|..+++ ...++.|.-+..+++.+..
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~-Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVT-ESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccc-hhhhhhhhHHHHHHHHHHH
Confidence 356889999999999999999999999999999985 778999999999 8889999999888887754
No 39
>PRK09687 putative lyase; Provisional
Probab=99.07 E-value=1.3e-08 Score=90.32 Aligned_cols=159 Identities=14% Similarity=0.067 Sum_probs=88.6
Q ss_pred CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhh
Q 017402 132 AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATI 211 (372)
Q Consensus 132 ~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i 211 (372)
-++.|...|. +.+..++..++.+|..+. ....++.+..++.++++.+|..++++|..+......
T Consensus 24 ~~~~L~~~L~--d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLD--DHNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHh--CCCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 4666777776 677777777777777653 234456667777777777777777777776432211
Q ss_pred ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhH
Q 017402 212 GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEG 287 (372)
Q Consensus 212 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~ 287 (372)
. ..+++.|..++....++.++..|+.+|.+++...... ...++..+...+.+. +..++.+|..+..
T Consensus 88 -~-~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---- 157 (280)
T PRK09687 88 -Q-DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND---- 157 (280)
T ss_pred -h-HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----
Confidence 1 2466677666443333377777777777775422111 001223333333221 3334444432221
Q ss_pred HHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402 288 REEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323 (372)
Q Consensus 288 ~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 323 (372)
..+++.|+.++.+.++.++..|+.+|..+
T Consensus 158 -------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 158 -------EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred -------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 33566666666665666666666666655
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.07 E-value=2.6e-11 Score=78.58 Aligned_cols=61 Identities=25% Similarity=0.511 Sum_probs=34.2
Q ss_pred CCCCccccCCcccCCCcee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHH
Q 017402 5 FPDDFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLI 69 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i 69 (372)
+++.+.|++|.++|++||. ..|.|.||..|+.+.+. ..||+|+.+.. ..+++.|+.+..++
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw-~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAW-IQDIQINRQLDSMI 65 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S--SS----HHHHHHH
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHH-HHHHHhhhhhhccC
Confidence 3456899999999999996 56999999999977553 34999999998 88999999988764
No 41
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.5e-08 Score=89.52 Aligned_cols=187 Identities=22% Similarity=0.235 Sum_probs=145.4
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccccc
Q 017402 93 ISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLV 171 (372)
Q Consensus 93 i~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~ 171 (372)
+..+.+.+.+.+.+..|+..|..++. +-+|..-+...||+..++..+. +.+.++++.|+++|...+.+ +..++.+.
T Consensus 87 ~~~~~~~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~ 163 (342)
T KOG2160|consen 87 IVILNSSSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVI 163 (342)
T ss_pred hhccCcccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34466666789999999999999998 5669999999999999999998 88999999999999998776 88899999
Q ss_pred ccCChHHHHHHHhcC-ChHHHHHHHHHHHHhccccc-chhhhccccchHHHHHHHhhcCC-chHHHHHHHHHHHhhcCCC
Q 017402 172 AEGAVSRVVAALRFG-SPDCRAIAATIITSLAVVEV-NKATIGDYPYAINALVSLLQNGK-LIREKKEAATALYALTSFP 248 (372)
Q Consensus 172 ~~g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~a~~aL~~L~~~~ 248 (372)
+.|+++.|+..|.++ +..++..|..++..+-.+.. ....+.. .++...|.+.+.+++ +..++..|+..+..|...+
T Consensus 164 E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 164 ELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 999999999999875 56677899999999998774 4444555 466999999999853 3588899999999988754
Q ss_pred c-hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC
Q 017402 249 E-NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK 283 (372)
Q Consensus 249 ~-~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~ 283 (372)
. ....+-..|....++.+.... .+.++.++-.+..
T Consensus 243 ~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 243 KSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 3 444333445555555555322 5555544444333
No 42
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.03 E-value=1.3e-10 Score=71.18 Aligned_cols=39 Identities=49% Similarity=1.122 Sum_probs=35.9
Q ss_pred ccCCcccCCCce-ecCCchHhhHHHHHHHHh-cCCCCCCCC
Q 017402 11 CPISLEIMSDPV-ILSSGHTFDRASIQRWLD-SGHRTCPIT 49 (372)
Q Consensus 11 C~ic~~~~~~Pv-~~~cgh~~c~~ci~~~~~-~~~~~CP~c 49 (372)
||||.+.+.+|+ +++|||+||+.|+.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 556789987
No 43
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.01 E-value=1.1e-10 Score=71.02 Aligned_cols=36 Identities=36% Similarity=0.807 Sum_probs=23.2
Q ss_pred ccCCcccCCC----ceecCCchHhhHHHHHHHHhcC---CCCCC
Q 017402 11 CPISLEIMSD----PVILSSGHTFDRASIQRWLDSG---HRTCP 47 (372)
Q Consensus 11 C~ic~~~~~~----Pv~~~cgh~~c~~ci~~~~~~~---~~~CP 47 (372)
||||.+ |.+ |+.++|||+||+.|+++++..+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999754 45787
No 44
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.98 E-value=3.4e-10 Score=95.40 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=55.9
Q ss_pred CCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR 74 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~ 74 (372)
..+.|-||.++++-|+.++|||+||..||.+++.. ...||+|+.... ..-++.+..++..++.+..
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~-esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPC-ESRLRGSSGSREINESHAR 89 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHH-hhhcccchhHHHHHHhhhh
Confidence 45789999999999999999999999999999986 667999999888 6666677777777766654
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.97 E-value=1.5e-07 Score=97.20 Aligned_cols=186 Identities=20% Similarity=0.149 Sum_probs=107.5
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc-------
Q 017402 134 SAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV------- 206 (372)
Q Consensus 134 ~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~------- 206 (372)
+.|...|. +.++.++..++.+|..+... -...++..|++.++.+|..|+.+|..+...+.
T Consensus 687 ~~L~~~L~--~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D 753 (897)
T PRK13800 687 PALRDHLG--SPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATD 753 (897)
T ss_pred HHHHHHhc--CCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcC
Confidence 56667777 67788888888888776421 12345555566666666666666554310000
Q ss_pred ----chhh-------hc-cccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----
Q 017402 207 ----NKAT-------IG-DYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG---- 270 (372)
Q Consensus 207 ----~~~~-------i~-~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~---- 270 (372)
.+.. +. .....++.|..++++.+. .++..|+.+|.++...+. .++.++..|.++
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~-~VR~aA~~aLg~~g~~~~---------~~~~l~~aL~d~d~~V 823 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDP-LVRAAALAALAELGCPPD---------DVAAATAALRASAWQV 823 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCH-HHHHHHHHHHHhcCCcch---------hHHHHHHHhcCCChHH
Confidence 0000 00 001234555555555443 555555555555432211 112344444222
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc
Q 017402 271 LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD 350 (372)
Q Consensus 271 ~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~ 350 (372)
+..|+.+|..+.. ...++.|+.++.+.+..++..|+.+|..+. .++. ..+.|...+++.
T Consensus 824 R~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~ 882 (897)
T PRK13800 824 RQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDS 882 (897)
T ss_pred HHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCC
Confidence 3345555543321 446788899998888999999999988862 2122 467777888999
Q ss_pred cHHHHHHHHHHHH
Q 017402 351 NEKVRRNANNLIQ 363 (372)
Q Consensus 351 ~~~v~~~a~~~L~ 363 (372)
+..||+.|.++|.
T Consensus 883 d~~Vr~~A~~aL~ 895 (897)
T PRK13800 883 DADVRAYARRALA 895 (897)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999985
No 46
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.96 E-value=2.7e-10 Score=72.99 Aligned_cols=47 Identities=36% Similarity=0.728 Sum_probs=40.7
Q ss_pred CCccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
++..|+||.+...+++..+|||. ||..|..+|+. ....||.||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46789999999999999999999 99999999998 4778999998765
No 47
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.93 E-value=6.9e-10 Score=94.09 Aligned_cols=48 Identities=27% Similarity=0.618 Sum_probs=40.5
Q ss_pred CCCccccCCcccCCCc--------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDP--------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~P--------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.++..||||++.+.+| +..+|||.||+.||.+|+.. ..+||.||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4568899999987654 45679999999999999875 678999998876
No 48
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.2e-07 Score=89.84 Aligned_cols=249 Identities=17% Similarity=0.150 Sum_probs=188.0
Q ss_pred HHHHhhccCCChHHHHHHHHHHH-HHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLT-KLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVG 169 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 169 (372)
|++-|... +++-.+.+|+..|. +|...+++.-..|--.-.+|.|+.+|+. ..+.++...|+++|.+|+.- +.....
T Consensus 172 LL~gL~~~-~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~-E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 172 LLQGLQAE-SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH-EHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHhcccc-CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhhccchhhe
Confidence 55555544 47778888998885 5556666666666556789999999995 35789999999999999877 888889
Q ss_pred ccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC-
Q 017402 170 LVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF- 247 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~- 247 (372)
++++++||.|+..|-. .-.++.+++..+|..++.. +.+..+ . +|++-..+..|.=-.. .++..|+.+..|.|..
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~-H~~AiL-~-AG~l~a~LsylDFFSi-~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR-HPKAIL-Q-AGALSAVLSYLDFFSI-HAQRVALAIAANCCKSI 325 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-ccHHHH-h-cccHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence 9999999999987755 6788999999999999854 344444 4 5888888877765555 7899999999999973
Q ss_pred -CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHH----hCCHhHHHHHHhccchHHHHHHHHhcCC----hhHHH
Q 017402 248 -PENRKRVVSCGAVPILMRLADAG----LERAVEVLSIL----VKCKEGREEMMRVSGCVGVFVKMLKTGS----SRAVQ 314 (372)
Q Consensus 248 -~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L----~~~~~~~~~i~~~~g~i~~L~~ll~~~~----~~~~~ 314 (372)
++.-..+++ ++|.|-.+|... .|.++-.+..+ ...++--+++.. .|.+.....++.-.. .....
T Consensus 326 ~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 326 RSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred CCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcCcccccccchh
Confidence 444445555 688888888432 45444333333 345666677787 689999999986532 23345
Q ss_pred hHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc
Q 017402 315 CSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLED 349 (372)
Q Consensus 315 ~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~ 349 (372)
..++.|..+|.+++..+..+.+.|+...|..++..
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 66788888899989999999999999999998865
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.2e-08 Score=86.80 Aligned_cols=183 Identities=18% Similarity=0.206 Sum_probs=152.9
Q ss_pred cCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHH
Q 017402 143 HSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINAL 221 (372)
Q Consensus 143 ~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~L 221 (372)
++.+.+-++.|+.-|..+..+-+|...+.+.|++..++..+++.+.++|..|+++|...+.++ .....+.+ .|+.+.|
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE-LGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHHHH
Confidence 346778899999999999999889899999999999999999999999999999999999877 56666777 6999999
Q ss_pred HHHhhcCCchHHHHHHHHHHHhhcCCC-chhHHHHhcCchHHHHHHHhhh------HHHHHHHHHHHhCCHhHHHHHHhc
Q 017402 222 VSLLQNGKLIREKKEAATALYALTSFP-ENRKRVVSCGAVPILMRLADAG------LERAVEVLSILVKCKEGREEMMRV 294 (372)
Q Consensus 222 v~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L~~L~~~~~~~~~i~~~ 294 (372)
+..+.+..+..++..|+.|++.|-.+. .+...+...++...|...+.++ +.+++..+..|......-..+...
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999997665578899999999999865 6888999999999999999663 677899999988855544446664
Q ss_pred cchHHHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402 295 SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC 326 (372)
Q Consensus 295 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 326 (372)
.|....+..+....+..+.+.+..++..+...
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 66666777777777888899999888776654
No 50
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.91 E-value=3.4e-10 Score=70.41 Aligned_cols=40 Identities=40% Similarity=0.943 Sum_probs=33.8
Q ss_pred cccCCcccCC---CceecCCchHhhHHHHHHHHhcCCCCCCCCC
Q 017402 10 KCPISLEIMS---DPVILSSGHTFDRASIQRWLDSGHRTCPITK 50 (372)
Q Consensus 10 ~C~ic~~~~~---~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~ 50 (372)
.|+||++.+. .++.++|||.||..|+.+|+.. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999884 4567899999999999999987 56899996
No 51
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.89 E-value=1.8e-07 Score=96.64 Aligned_cols=219 Identities=18% Similarity=0.116 Sum_probs=136.9
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
+.|++.|.+. ++.+|..|+..|..+.. .+.++.|+..|+ +.+..++..|+.+|..+.....
T Consensus 624 ~~L~~~L~D~--d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~--D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 624 AELAPYLADP--DPGVRRTAVAVLTETTP-----------PGFGPALVAALG--DGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhccC----
Confidence 4577778765 88999999999987642 346888999998 8899999999999988742211
Q ss_pred ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC-
Q 017402 170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP- 248 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~- 248 (372)
..+.|...|.++++.+|..++.+|..+.. +-...|+..|.+++. .++..|+.+|..+-..+
T Consensus 685 -----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~-~VR~~Av~aL~~~~~~~~ 746 (897)
T PRK13800 685 -----PAPALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGDPDH-RVRIEAVRALVSVDDVES 746 (897)
T ss_pred -----chHHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCH-HHHHHHHHHHhcccCcHH
Confidence 13578888888999999999999888641 113456666766666 77777777777542100
Q ss_pred ----------chhHHHHh---------cCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHH
Q 017402 249 ----------ENRKRVVS---------CGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKML 305 (372)
Q Consensus 249 ----------~~~~~i~~---------~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll 305 (372)
+.|....+ .+.++.|..++.+. +..++..|..+... ...+..+...+
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~----------~~~~~~l~~aL 816 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCP----------PDDVAAATAAL 816 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----------chhHHHHHHHh
Confidence 01110000 00123333333221 22233333222110 11223445555
Q ss_pred hcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 306 KTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 306 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
.+.+..++..|+.+|..+.. ...++.|+.++++.+..||..|..+|..+.
T Consensus 817 ~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 817 RASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred cCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 55555566666666654321 225699999999999999999999998763
No 52
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.87 E-value=5.3e-08 Score=88.33 Aligned_cols=260 Identities=16% Similarity=0.152 Sum_probs=188.2
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccc
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVG 169 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 169 (372)
.|+.++.+......+|.++.+.|..+.. .+|++.++..| +..++.+-+. .+.++.+...+.+|.++..+ ++....
T Consensus 184 ~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~-~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 184 LLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKE-REPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhh-cCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4778888875556779999999988775 35899998887 6666666653 36788999999999999888 566778
Q ss_pred ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc--cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE--VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
++..|+++.++-..+..++.+...++-+|.|++.+. +.+..|++ ..+-+-|..+..+.++ -++-.|+.+.+.|+.+
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDe-l~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDE-LLRLHACLAVAVLATN 337 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHH-HHHHHHHHHHhhhhhh
Confidence 899999999999999999999999999999998765 56677777 5788888888888766 7888999999999999
Q ss_pred CchhHHHHhcCc---hHHHHHHHhhhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402 248 PENRKRVVSCGA---VPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324 (372)
Q Consensus 248 ~~~~~~i~~~g~---v~~L~~ll~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 324 (372)
.+.-..+.+.|. |.+++..++.++ ++++ .....-.....-+..|+-+|++..-+.+--+ + ..+|
T Consensus 338 KE~E~~VrkS~TlaLVEPlva~~DP~~---------FARD-~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~--A-F~l~ 404 (832)
T KOG3678|consen 338 KEVEREVRKSGTLALVEPLVASLDPGR---------FARD-AHDYAQGRGPDDLQRLVPLLDSNRLEAQCIG--A-FYLC 404 (832)
T ss_pred hhhhHHHhhccchhhhhhhhhccCcch---------hhhh-hhhhhccCChHHHHHhhhhhhcchhhhhhhH--H-HHHH
Confidence 887777777775 455555555431 1110 0011111123357778888874333333222 2 2334
Q ss_pred cC----CHHH-HHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 325 CC----SQEI-CGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 325 ~~----~~~~-~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
.. +..+ -+.+-+-|.|+.|-++..+.+...-.-|.++|+.+-+..
T Consensus 405 ~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 405 AEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEV 454 (832)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcccc
Confidence 32 1122 234566799999999999888888889999999886653
No 53
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.87 E-value=7.1e-07 Score=80.30 Aligned_cols=268 Identities=15% Similarity=0.093 Sum_probs=191.9
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCH----HHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAV----SAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i----~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 165 (372)
+..+.+|.++ +.-....+.+.+..++...... .+.+.. ..|...+.+ +.+++....++++|..+...++
T Consensus 117 ~~fl~ll~r~--d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~-~~~~~~~~~~~rcLQ~ll~~~e 189 (442)
T KOG2759|consen 117 LSFLNLLNRQ--DTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQS-STNNDYIQFAARCLQTLLRVDE 189 (442)
T ss_pred HHHHHHHhcC--ChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHhcCcc
Confidence 4577778776 4444445888888887654421 111122 233444552 3678889999999999999999
Q ss_pred ccccccccCChHHHHHHHhc--CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402 166 NKVGLVAEGAVSRVVAALRF--GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA 243 (372)
Q Consensus 166 ~~~~i~~~g~i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~ 243 (372)
.|..++.++++..++..+.+ .+..++-+.+-.++-|+.++...+.+.. -+.|+.|..++++..-..+..-.+.++.|
T Consensus 190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~N 268 (442)
T KOG2759|consen 190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRN 268 (442)
T ss_pred hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999943 4788888999999999998887777755 68999999999975333788889999999
Q ss_pred hcCCC-------chhHHHHhcCchHHHHHHHhhh---HHHHHHH-----------HHHHhCCH-----------------
Q 017402 244 LTSFP-------ENRKRVVSCGAVPILMRLADAG---LERAVEV-----------LSILVKCK----------------- 285 (372)
Q Consensus 244 L~~~~-------~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~-----------L~~L~~~~----------------- 285 (372)
+.... +....++..++ +.-++.|... .|....- .-.|+..+
T Consensus 269 ll~k~~~~~~~k~~~~~mv~~~v-~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~H 347 (442)
T KOG2759|consen 269 LLDKGPDRETKKDIASQMVLCKV-LKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVH 347 (442)
T ss_pred HhccCchhhHHHHHHHHHHhcCc-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccc
Confidence 88755 23345555544 4445555222 1221111 11222222
Q ss_pred -------hHHHHHHh-ccchHHHHHHHHhcCC-hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHH
Q 017402 286 -------EGREEMMR-VSGCVGVFVKMLKTGS-SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRR 356 (372)
Q Consensus 286 -------~~~~~i~~-~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~ 356 (372)
++...+-+ .-..+..|+++|+..+ |....-|+.=+.....+.|+.+..+.+-|+=+.+++++.+.+++||-
T Consensus 348 k~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry 427 (442)
T KOG2759|consen 348 KSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRY 427 (442)
T ss_pred cccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHH
Confidence 22222333 1235888999997754 77777888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 017402 357 NANNLIQTLS 366 (372)
Q Consensus 357 ~a~~~L~~l~ 366 (372)
+|..++..|-
T Consensus 428 ~ALlavQ~lm 437 (442)
T KOG2759|consen 428 HALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHH
Confidence 9999997653
No 54
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.87 E-value=2.2e-09 Score=67.25 Aligned_cols=43 Identities=49% Similarity=1.089 Sum_probs=38.3
Q ss_pred cccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCC
Q 017402 10 KCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLP 52 (372)
Q Consensus 10 ~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~ 52 (372)
.|+||.+.+.+|+.+. |||.||..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888776 999999999999998767789999864
No 55
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.5e-09 Score=92.27 Aligned_cols=51 Identities=25% Similarity=0.529 Sum_probs=45.3
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPS 58 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~ 58 (372)
+..+.|.+|++..++|--++|||.||-+||..|..+ ...||.||..++ +..
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~-psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQ-PSK 287 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCC-Ccc
Confidence 445899999999999999999999999999999986 566999999988 443
No 56
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=9.7e-10 Score=90.59 Aligned_cols=56 Identities=29% Similarity=0.677 Sum_probs=48.8
Q ss_pred CCccccCCcccCCCceecCCchHhhHHHHHHHHhc--CCCCCCCCCCCCCCCCCCCccH
Q 017402 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCPITKLPLPDQPSLIPNH 63 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~--~~~~CP~c~~~~~~~~~~~~n~ 63 (372)
..|.|-||++.-+|||++.|||-||=.||.+|+.. +...||+|+..++ ..+++|-+
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs-~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS-IDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc-cceEEeee
Confidence 46899999999999999999999999999999964 3457999999998 77776644
No 57
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.1e-09 Score=84.56 Aligned_cols=51 Identities=29% Similarity=0.641 Sum_probs=41.7
Q ss_pred CCccccCCcccCCC--ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSD--PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSL 59 (372)
Q Consensus 7 ~~~~C~ic~~~~~~--Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 59 (372)
.-|.||||++-+.+ ||...|||.||+.||.+.+.. ...||.|++.++ ++.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt-~k~~ 182 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKIT-HKQF 182 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccc-hhhh
Confidence 45899999998865 456789999999999998885 667999998777 4433
No 58
>PHA02926 zinc finger-like protein; Provisional
Probab=98.81 E-value=3.4e-09 Score=86.59 Aligned_cols=51 Identities=22% Similarity=0.473 Sum_probs=40.7
Q ss_pred CCCCCccccCCcccCCC---------ceecCCchHhhHHHHHHHHhcC-----CCCCCCCCCCCC
Q 017402 4 QFPDDFKCPISLEIMSD---------PVILSSGHTFDRASIQRWLDSG-----HRTCPITKLPLP 54 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~---------Pv~~~cgh~~c~~ci~~~~~~~-----~~~CP~c~~~~~ 54 (372)
..+++..|+||++...+ ++..+|+|+||..||.+|.... ...||.||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 35678899999997643 3456899999999999999742 346999999876
No 59
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=5.7e-07 Score=87.12 Aligned_cols=229 Identities=17% Similarity=0.186 Sum_probs=168.9
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhc-CCCC-ccccccccccCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccc-cch
Q 017402 133 VSAVLNCLKIHSDGFTLQEKALSLLLN-LSLD-DDNKVGLVAEGAVSRVVAALRFG-SPDCRAIAATIITSLAVVE-VNK 208 (372)
Q Consensus 133 i~~L~~lL~~~~~~~~~~~~a~~~L~~-l~~~-~~~~~~i~~~g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~-~~~ 208 (372)
+..|+.=|.. ..++..+..++.-|.. |.+. ++.-..|.-.-++|.|+.+|++. +.++...||++|.+|+..- ...
T Consensus 169 ~kkLL~gL~~-~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQA-ESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccc-cCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 3444444442 2356666666666654 3443 44333444567899999999985 7999999999999998654 455
Q ss_pred hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh---hh-HHHHHHHHHHHhCC
Q 017402 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD---AG-LERAVEVLSILVKC 284 (372)
Q Consensus 209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~---~~-~e~a~~~L~~L~~~ 284 (372)
..++. .++||.|+.-|..-..-++.++++.+|-.++... -..+.++|++...+..|+ -. +..|+++.+|.|..
T Consensus 248 a~vV~-~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 248 AIVVD-EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred heeec-ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666 7999999988776444489999999999998743 256789999999888884 22 88899999999983
Q ss_pred --HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhc---CCHHHHHHHHhcChhHHHHHHhhcc----cHHHH
Q 017402 285 --KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC---CSQEICGDSRKEGVLDICMGLLEDD----NEKVR 355 (372)
Q Consensus 285 --~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~g~~~~l~~ll~~~----~~~v~ 355 (372)
++.-..+++ ++|.|..+++..+.+..+.++.++..++. ++++.-+.+...|.+....+|+... +..+.
T Consensus 325 i~sd~f~~v~e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 325 IRSDEFHFVME---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred CCCccchHHHH---HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 444455555 79999999999888889998888888864 4578888899999999999988653 34455
Q ss_pred HHHHHHHHHHhcC
Q 017402 356 RNANNLIQTLSGN 368 (372)
Q Consensus 356 ~~a~~~L~~l~~~ 368 (372)
....++|+.+..+
T Consensus 402 ~~vIrmls~msS~ 414 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSG 414 (1051)
T ss_pred hHHHHHHHHHccC
Confidence 6666666665543
No 60
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.77 E-value=9e-09 Score=62.15 Aligned_cols=39 Identities=59% Similarity=1.207 Sum_probs=35.7
Q ss_pred ccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCC
Q 017402 11 CPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPIT 49 (372)
Q Consensus 11 C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c 49 (372)
|+||.+...+|+.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998556789987
No 61
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.75 E-value=6.6e-08 Score=73.20 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=110.9
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
..|+..... +++.+.+.+....|.|++. +|.|...+.+.+++...++.|. ..+..+.+.++..|+|++.++.+.+.
T Consensus 19 q~LV~efq~-tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~--e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 19 QHLVDEFQT-TTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLE--EQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHH-hccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhh--cccHHHHHHhHHHHHhhccChHHHHH
Confidence 345655554 3688999999999999998 7889999999999999999999 88999999999999999999999999
Q ss_pred ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHH
Q 017402 170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSL 224 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~l 224 (372)
|.++++++.++..+++....+...|+.++..|+..+ ..+..+.. ..++..+.+.
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~-p~Vv~~v~r~ 149 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS-PAVVRTVQRW 149 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc-HHHHHHHHHH
Confidence 999999999999999999999999999999998766 45566655 4455444443
No 62
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1.4e-06 Score=75.33 Aligned_cols=268 Identities=16% Similarity=0.149 Sum_probs=188.9
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhh-cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
.+++.+|.+. ++.+|..|+..+..++.. ..+..... .-.++.+.+++. ...+ .+.|+.+|.|++.+...++
T Consensus 6 ~elv~ll~~~--sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~--~~~~--~~~a~~alVnlsq~~~l~~ 77 (353)
T KOG2973|consen 6 VELVELLHSL--SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLK--DLDP--AEPAATALVNLSQKEELRK 77 (353)
T ss_pred HHHHHHhccC--ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHcc--Cccc--ccHHHHHHHHHHhhHHHHH
Confidence 3577888877 789999999999999875 24444432 356788888888 4444 7889999999999988888
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhh-ccc-----cchHHHHHHHhhcCCc-hHHHHHHHHHH
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATI-GDY-----PYAINALVSLLQNGKL-IREKKEAATAL 241 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i-~~~-----~g~i~~Lv~ll~~~~~-~~~~~~a~~aL 241 (372)
.+.+. .+..+++.+.+.....-..++.+|.|++..++....+ ... .|.+.......+.+-. -.-....+-.+
T Consensus 78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 77777 8888888887777777788999999999887543332 111 2444444444443322 13355667788
Q ss_pred HhhcCCCchhHHHHhcCchH--HHHHHHh--hh--HHHHHHHHHHHhCCHhHHHHHHhc-cchHHHHH------------
Q 017402 242 YALTSFPENRKRVVSCGAVP--ILMRLAD--AG--LERAVEVLSILVKCKEGREEMMRV-SGCVGVFV------------ 302 (372)
Q Consensus 242 ~~L~~~~~~~~~i~~~g~v~--~L~~ll~--~~--~e~a~~~L~~L~~~~~~~~~i~~~-~g~i~~L~------------ 302 (372)
.||+..+.+|..+.+...++ .++.+-. +. +...+.+|.|.|.....+..+... ...++.|+
T Consensus 157 ~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 157 ANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred HHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence 99999999999998765322 1222222 11 456889999999988887776662 11223222
Q ss_pred ---------HHHh-----cCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHHHhc
Q 017402 303 ---------KMLK-----TGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 303 ---------~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~ 367 (372)
+++- ..++.++..-+.+|.-+|.. ...|+.+++.|+.+.+.++=+. .+++++++...+...|-+
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 2331 13567888889999999987 8999999999999888887765 588888888888876654
No 63
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.73 E-value=5.8e-06 Score=76.85 Aligned_cols=235 Identities=19% Similarity=0.157 Sum_probs=169.4
Q ss_pred CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc-cccc-----cCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 017402 131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV-GLVA-----EGAVSRVVAALRFGSPDCRAIAATIITSLAVV 204 (372)
Q Consensus 131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~i~~-----~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~ 204 (372)
..+..++.+|.. ....++....+..+..|...++.+. .+.+ .+...+++.+|.++|.-+...++..|..+...
T Consensus 53 ~y~~~~l~ll~~-~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQ-IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 457778888875 3667888888888888766654433 2332 35678888899888999999999999999765
Q ss_pred ccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh------HHHHHHHH
Q 017402 205 EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG------LERAVEVL 278 (372)
Q Consensus 205 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L 278 (372)
......-....-.+..|...+++.++...+..|+.+|.+|...++.|..+.+.++++.|+.+|+.. .=.++-++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 432211111012344556666655434788889999999999999999999999999999999652 23578889
Q ss_pred HHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCC------HHHHHHHHhcChhHHHHHHhhc--
Q 017402 279 SILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCS------QEICGDSRKEGVLDICMGLLED-- 349 (372)
Q Consensus 279 ~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~g~~~~l~~ll~~-- 349 (372)
+-|+..++....... .+.++.|+++++. ..+++.+-++.+|.|+...+ ......|+..|+.+.+-.+...
T Consensus 212 WlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 999998887776655 7899999999976 56788899999999998742 2455678888877766555543
Q ss_pred ccHHHHHHHHHHHHHHhc
Q 017402 350 DNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 350 ~~~~v~~~a~~~L~~l~~ 367 (372)
+++++.+.-..+-..|.+
T Consensus 291 ~DedL~edl~~L~e~L~~ 308 (429)
T cd00256 291 DDEDLTDDLKFLTEELKN 308 (429)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 477776665555554443
No 64
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=8.5e-09 Score=94.96 Aligned_cols=70 Identities=33% Similarity=0.690 Sum_probs=60.8
Q ss_pred CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCCC
Q 017402 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPL 77 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 77 (372)
...+++.||||++.|.+|++++|||+||+.|+..++. ....||.|+. .. . .+.+|..+..+++.+.....
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~-~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-R-NLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-h-ccCccHHHHHHHHHHHhcCC
Confidence 3568899999999999998899999999999999998 5678999996 43 2 77799999999999987644
No 65
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.69 E-value=1.9e-08 Score=62.34 Aligned_cols=41 Identities=27% Similarity=0.553 Sum_probs=34.9
Q ss_pred cccCCcccC---CCceecCCchHhhHHHHHHHHhcCCCCCCCCCC
Q 017402 10 KCPISLEIM---SDPVILSSGHTFDRASIQRWLDSGHRTCPITKL 51 (372)
Q Consensus 10 ~C~ic~~~~---~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~ 51 (372)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999988 467789999999999999988 44678999974
No 66
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=6.5e-09 Score=90.55 Aligned_cols=70 Identities=27% Similarity=0.413 Sum_probs=60.9
Q ss_pred CCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402 5 FPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR 74 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~ 74 (372)
+.-++.||||+++++...+.+ |+|.||..||...+..++..||.||+.+.....++++..+..++.++..
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~ 110 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP 110 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence 445789999999999998876 9999999999999988899999999998778888888888887776654
No 67
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=4.5e-08 Score=85.56 Aligned_cols=62 Identities=23% Similarity=0.477 Sum_probs=47.2
Q ss_pred CCccccCCcc-cCCCce---ec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCC----CCccHHHHHHH
Q 017402 7 DDFKCPISLE-IMSDPV---IL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPS----LIPNHALRSLI 69 (372)
Q Consensus 7 ~~~~C~ic~~-~~~~Pv---~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~----~~~n~~l~~~i 69 (372)
++..||+|.. .+..|- .+ +|||.||..|+.+.|..+...||.|+.++. ... +.++..+.+-+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr-k~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR-KNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc-hhhccccccccHHHHHHH
Confidence 4578999997 355663 23 699999999999999877789999999988 555 44555555544
No 68
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.61 E-value=1e-08 Score=66.74 Aligned_cols=43 Identities=37% Similarity=0.890 Sum_probs=30.5
Q ss_pred CCccccCCcccCCCcee-cCCchHhhHHHHHHHHhc-CCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDS-GHRTCPIT 49 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~-~~~~CP~c 49 (372)
..+.|||++..|.+||+ ..|||+|++..|.+|+.. +...||+.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 46899999999999997 579999999999999943 35589983
No 69
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.60 E-value=9.2e-07 Score=67.10 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=127.9
Q ss_pred cchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHH
Q 017402 215 PYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREE 290 (372)
Q Consensus 215 ~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~ 290 (372)
-+-+..||.-.+...+.+.++..+.-|.|.+.++-|-..+.+..+++..++-|... .+..+..|+|+|.+..+.+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 36778888888776555899999999999999999999999999999999999655 78899999999999999999
Q ss_pred HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 291 MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 291 i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
|.+ .++++.++..+++..+..--.|+..|..++-.+...+.++..--++..+.+.-.+-+...|.-|...|...
T Consensus 95 I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 95 IRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred HHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999 89999999999887777778899999999998888899999888888888777666666666676666543
No 70
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.60 E-value=1.2e-05 Score=78.85 Aligned_cols=238 Identities=17% Similarity=0.191 Sum_probs=161.8
Q ss_pred CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402 101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV 180 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv 180 (372)
.++..|.-|++.|.+++. ++..+. .++.+.+++. +.++.+|..|+.++..+...... .+... .++.+.
T Consensus 91 ~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~ 158 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLS--DPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLK 158 (526)
T ss_dssp SSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHH--SSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHH
T ss_pred CCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhc--CCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHh
Confidence 378899999999999883 444444 3788889999 88999999999999998654222 12223 789999
Q ss_pred HHHhcCChHHHHHHHHHHHHh-cccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCc
Q 017402 181 AALRFGSPDCRAIAATIITSL-AVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGA 259 (372)
Q Consensus 181 ~~L~~~~~~~~~~a~~~L~~l-s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~ 259 (372)
.+|.+.++.++..|+.++..+ ...+... .+. ...+..|.+++...++ -.+...+..|..++........- ...
T Consensus 159 ~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~--~~~~~~L~~~l~~~~~-~~q~~il~~l~~~~~~~~~~~~~--~~~ 232 (526)
T PF01602_consen 159 QLLSDKDPSVVSAALSLLSEIKCNDDSYK-SLI--PKLIRILCQLLSDPDP-WLQIKILRLLRRYAPMEPEDADK--NRI 232 (526)
T ss_dssp HHTTHSSHHHHHHHHHHHHHHHCTHHHHT-THH--HHHHHHHHHHHTCCSH-HHHHHHHHHHTTSTSSSHHHHHH--HHH
T ss_pred hhccCCcchhHHHHHHHHHHHccCcchhh-hhH--HHHHHHhhhcccccch-HHHHHHHHHHHhcccCChhhhhH--HHH
Confidence 999999999999999999999 2111112 111 3566666666666666 78888889998888755432211 446
Q ss_pred hHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHH
Q 017402 260 VPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSR 335 (372)
Q Consensus 260 v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 335 (372)
++.+..++.+. .-.++.++..+..... .. ..+++.|..++.+.++.++-.++..|..++...+ ..+
T Consensus 233 i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~~--~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~----~~v 302 (526)
T PF01602_consen 233 IEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----LL--QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP----PAV 302 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----HH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH----HHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhcchH----HH--HhhHHHHHHHhhcccchhehhHHHHHHHhhcccc----hhh
Confidence 67777777554 3345666666666554 22 3478889999988888889999999999887752 222
Q ss_pred hcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 336 KEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 336 ~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
. .....+..+..+++..+|..+..+|..+..
T Consensus 303 ~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 303 F-NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred h-hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 2 222223333336778888888888876643
No 71
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=9.3e-06 Score=78.42 Aligned_cols=273 Identities=15% Similarity=0.159 Sum_probs=203.6
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcCh----------------HHHHHHhh-cCCHHHHHHHHhhcCCChhHHHH
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDS----------------ASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEK 152 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~----------------~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~ 152 (372)
+.+|+.|..+-.|++....++..+..+...++ ...+.|++ .+.|..|+.++. ..+-.++..
T Consensus 64 k~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e--~~DF~VR~~ 141 (970)
T KOG0946|consen 64 KPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE--EFDFHVRLY 141 (970)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH--hhchhhhhH
Confidence 56999999888899999999999998886552 12334444 488999999998 788899999
Q ss_pred HHHHHhcCCCC--cccccccc-ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC
Q 017402 153 ALSLLLNLSLD--DDNKVGLV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK 229 (372)
Q Consensus 153 a~~~L~~l~~~--~~~~~~i~-~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~ 229 (372)
++..|.++-.. .+.+..+. ..-+|..++.+|.+....+|-.+.-.|..+..+...-.+++...++++.|..++....
T Consensus 142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 142 AIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999997655 34444444 5789999999999888889999999999999888887888777899999999998643
Q ss_pred --c-hHHHHHHHHHHHhhcCCC-chhHHHHhcCchHHHHHHHhh---------h--------HHHHHHHHHHHhCC----
Q 017402 230 --L-IREKKEAATALYALTSFP-ENRKRVVSCGAVPILMRLADA---------G--------LERAVEVLSILVKC---- 284 (372)
Q Consensus 230 --~-~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~---------~--------~e~a~~~L~~L~~~---- 284 (372)
+ .-+...++..|-||-.+. .|...+.+.+.||.|.++|.. + .-.++.++..|..-
T Consensus 222 g~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~ 301 (970)
T KOG0946|consen 222 GLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS 301 (970)
T ss_pred CCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 2 368889999999988854 688888899999999999821 1 12367777777662
Q ss_pred ---HhHHHHHHhccchHHHHHHHHhcC--ChhHHHhHHHHHHHHhcCCHHHHHHHHhcCh------hHHHHH----Hhhc
Q 017402 285 ---KEGREEMMRVSGCVGVFVKMLKTG--SSRAVQCSLFTLSCLCCCSQEICGDSRKEGV------LDICMG----LLED 349 (372)
Q Consensus 285 ---~~~~~~i~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~------~~~l~~----ll~~ 349 (372)
..++..+.. .+++..|..++.+. ..+++..+.-+++++.+++..+...+.+..+ .+.++- +..+
T Consensus 302 ~~~~q~qk~l~s-s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne 380 (970)
T KOG0946|consen 302 SITHQNQKALVS-SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNE 380 (970)
T ss_pred HHHHHHHHHHHH-cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhc
Confidence 223344455 78899998888764 4577888888999999888888888866321 122222 2222
Q ss_pred -ccHHHHHHHHHHHHHH
Q 017402 350 -DNEKVRRNANNLIQTL 365 (372)
Q Consensus 350 -~~~~v~~~a~~~L~~l 365 (372)
.....|=+...+++.+
T Consensus 381 ~q~~~lRcAv~ycf~s~ 397 (970)
T KOG0946|consen 381 KQPFSLRCAVLYCFRSY 397 (970)
T ss_pred cCCchHHHHHHHHHHHH
Confidence 3556666666666543
No 72
>PF05536 Neurochondrin: Neurochondrin
Probab=98.52 E-value=1.2e-05 Score=78.11 Aligned_cols=231 Identities=19% Similarity=0.129 Sum_probs=162.1
Q ss_pred CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc----ccccccccCChHHHHHHHhc-------CChHHHHHHHHHHHH
Q 017402 132 AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD----NKVGLVAEGAVSRVVAALRF-------GSPDCRAIAATIITS 200 (372)
Q Consensus 132 ~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~----~~~~i~~~g~i~~lv~~L~~-------~~~~~~~~a~~~L~~ 200 (372)
.+...+.+|+ ..+.+-+-.++-.+.++..+++ .++.|.++=+.+.+-++|++ +....+..|..+|..
T Consensus 6 ~l~~c~~lL~--~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 6 SLEKCLSLLK--SADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHhc--cCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3566788888 6677778888888888877643 24457777778999999987 235677789999999
Q ss_pred hcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh---HHHHHHH
Q 017402 201 LAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG---LERAVEV 277 (372)
Q Consensus 201 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~ 277 (372)
++..++....-.- .+-||.|++.+.+.++..+...++.+|..++.+++++..+++.|+|+.|.+.+.+. .|.++.+
T Consensus 84 f~~~~~~a~~~~~-~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~l 162 (543)
T PF05536_consen 84 FCRDPELASSPQM-VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNL 162 (543)
T ss_pred HcCChhhhcCHHH-HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHH
Confidence 9986654332211 36799999999887655899999999999999999999999999999999999654 7899999
Q ss_pred HHHHhCCHhHHHHHHhcc----chHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHH-----HHHHHHhcChhHHHHHHhh
Q 017402 278 LSILVKCKEGREEMMRVS----GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQE-----ICGDSRKEGVLDICMGLLE 348 (372)
Q Consensus 278 L~~L~~~~~~~~~i~~~~----g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~g~~~~l~~ll~ 348 (372)
+.+++..... ...-+.. ..++.+.+.+.......+-..+..|..+-...+. ....-+-..+..-+..+++
T Consensus 163 L~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 163 LLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 9998874331 1111212 2344455555444445566677777776555421 1122233446666777777
Q ss_pred cc-cHHHHHHHHHHHHHHh
Q 017402 349 DD-NEKVRRNANNLIQTLS 366 (372)
Q Consensus 349 ~~-~~~v~~~a~~~L~~l~ 366 (372)
+- .+.-|..|..+...|-
T Consensus 242 sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLL 260 (543)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 64 6666777776665553
No 73
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6e-08 Score=81.49 Aligned_cols=49 Identities=24% Similarity=0.462 Sum_probs=43.5
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHH-HHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQR-WLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~-~~~~~~~~CP~c~~~~~ 54 (372)
..++.|+||.+.+.+|.-++|||.||-.||.. |-.+....||.||....
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 45899999999999999999999999999999 66665567999998776
No 74
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.49 E-value=5.1e-05 Score=70.02 Aligned_cols=266 Identities=18% Similarity=0.180 Sum_probs=189.6
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV 171 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 171 (372)
+...+-++ +.++|..+++.++.+.. +++.-+.+.+.+.-..++..|.....+..-+++|++.+..+...+.+... .
T Consensus 30 i~~~lL~~--~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~ 105 (371)
T PF14664_consen 30 IQCMLLSD--SKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-I 105 (371)
T ss_pred HHHHHCCC--cHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-C
Confidence 33344444 48999999999999888 66788899999988888888875434555688999999887655444332 3
Q ss_pred ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh
Q 017402 172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR 251 (372)
Q Consensus 172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 251 (372)
..|++..++.+.++.++..+..|..+|..++..+ -+.+.. .|++..|++.+-++.. +..+..+.++..+-.++..|
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~-~gG~~~L~~~l~d~~~-~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAE-CGGIRVLLRALIDGSF-SISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHH-cCCHHHHHHHHHhccH-hHHHHHHHHHHHHhCCcchh
Confidence 6789999999999999999999999999998654 333444 6899999999998766 68888889999999999998
Q ss_pred HHHHhcCchHHHHHHH-hh-------h-----HHHHHHHHHHHhCCHhHHHHHHhcc-chHHHHHHHHhcCChhHHHhHH
Q 017402 252 KRVVSCGAVPILMRLA-DA-------G-----LERAVEVLSILVKCKEGREEMMRVS-GCVGVFVKMLKTGSSRAVQCSL 317 (372)
Q Consensus 252 ~~i~~~g~v~~L~~ll-~~-------~-----~e~a~~~L~~L~~~~~~~~~i~~~~-g~i~~L~~ll~~~~~~~~~~a~ 317 (372)
..+...--+..++.-+ +. . -..+..++..+-+...|--.+...+ .++..|+..|...++.+++...
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 8776543344444433 11 0 1234555555555555555554433 4677777777666666666666
Q ss_pred HHHHHHhcC------------------CH------------------------------H----HHHHHHhcChhHHHHH
Q 017402 318 FTLSCLCCC------------------SQ------------------------------E----ICGDSRKEGVLDICMG 345 (372)
Q Consensus 318 ~~L~~l~~~------------------~~------------------------------~----~~~~~~~~g~~~~l~~ 345 (372)
.++..+-.- +. . ....+++.|.++.|++
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~ 341 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVE 341 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHH
Confidence 666555210 00 0 0123578999999999
Q ss_pred Hhhcc-cHHHHHHHHHHHHHH
Q 017402 346 LLEDD-NEKVRRNANNLIQTL 365 (372)
Q Consensus 346 ll~~~-~~~v~~~a~~~L~~l 365 (372)
+..+. ++.+..+|.-+|..+
T Consensus 342 li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 342 LIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHhcCCCchHHHHHHHHHHHH
Confidence 99987 889999999988643
No 75
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.48 E-value=1.1e-07 Score=82.61 Aligned_cols=67 Identities=15% Similarity=0.417 Sum_probs=55.4
Q ss_pred CCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCCC---CCCCCccHHHHHHHHHH
Q 017402 5 FPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLPD---QPSLIPNHALRSLISNF 72 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~---~~~~~~n~~l~~~i~~~ 72 (372)
+-...+|.+|..+|.|+.|+. |-||||+.||.+++.. ..+||.|+..+.. ...+..+++++.++..+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 445678999999999999876 9999999999999987 7789999987662 34577788888777555
No 76
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.47 E-value=1.1e-07 Score=65.88 Aligned_cols=40 Identities=35% Similarity=0.803 Sum_probs=32.2
Q ss_pred cccCCcccCCCc------------e-ecCCchHhhHHHHHHHHhcCCCCCCCCC
Q 017402 10 KCPISLEIMSDP------------V-ILSSGHTFDRASIQRWLDSGHRTCPITK 50 (372)
Q Consensus 10 ~C~ic~~~~~~P------------v-~~~cgh~~c~~ci~~~~~~~~~~CP~c~ 50 (372)
.|+||++.+.+| + ...|||.|+..||.+|+.. ..+||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 499999999443 2 3479999999999999986 45899997
No 77
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=9.3e-08 Score=87.79 Aligned_cols=53 Identities=34% Similarity=0.639 Sum_probs=45.7
Q ss_pred CccccCCcccCCCceecCCchHhhHHHHHHHHhcC----CCCCCCCCCCCCCCCCCCc
Q 017402 8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSG----HRTCPITKLPLPDQPSLIP 61 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~----~~~CP~c~~~~~~~~~~~~ 61 (372)
+..||||++...-|+.+.|||.||-.||.++|..+ ...||.|+..++ .+++.|
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~-~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT-LKDLLP 242 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc-ccceee
Confidence 78899999999999999999999999999999754 357999999888 655544
No 78
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.44 E-value=1.1e-05 Score=78.93 Aligned_cols=250 Identities=18% Similarity=0.157 Sum_probs=172.9
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
.++.+.++.+ .+...|+=+.-.+..+...+++.... ++..+.+=|. +.++.++..|+++|.++... +..
T Consensus 44 ~~~vi~l~~s--~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~--~~n~~~~~lAL~~l~~i~~~-~~~- 112 (526)
T PF01602_consen 44 FMEVIKLISS--KDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLN--SPNPYIRGLALRTLSNIRTP-EMA- 112 (526)
T ss_dssp HHHHHCTCSS--SSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHC--SSSHHHHHHHHHHHHHH-SH-HHH-
T ss_pred HHHHHHHhCC--CCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhc--CCCHHHHHHHHhhhhhhccc-chh-
Confidence 3556666663 47888888888888888877652111 3555555566 78899999999999998732 221
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
.-.++.+.+++.++++.+|..|+.++..+.... ...+.. . .++.+..++.+.+. .++..|+.++..+..++
T Consensus 113 ----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~--p~~~~~-~-~~~~l~~lL~d~~~-~V~~~a~~~l~~i~~~~ 183 (526)
T PF01602_consen 113 ----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD--PDLVED-E-LIPKLKQLLSDKDP-SVVSAALSLLSEIKCND 183 (526)
T ss_dssp ----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--HCCHHG-G-HHHHHHHHTTHSSH-HHHHHHHHHHHHHHCTH
T ss_pred ----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--HHHHHH-H-HHHHHhhhccCCcc-hhHHHHHHHHHHHccCc
Confidence 335788999999999999999999999997553 223322 2 79999999988776 99999999999991111
Q ss_pred chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402 249 ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324 (372)
Q Consensus 249 ~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 324 (372)
+....++ ...++.|.+++... +..++.+|..++........- ...++.+..++++.++.+.-.|+.++..+.
T Consensus 184 ~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 184 DSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 1111111 11233344443222 456667777666643332211 347888888888888899999999998877
Q ss_pred cCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 325 CCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
.. +. .-..+++.|..++.+.++++|-.+...|..+...
T Consensus 260 ~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 260 PS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp SS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred cc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence 65 33 3345789999999999999999999999877543
No 79
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.1e-07 Score=91.62 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=47.9
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~ 60 (372)
..-++||.|..-++|.|++.|||.||..|+..........||.|+..|. ..++.
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg-anDv~ 694 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG-ANDVH 694 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC-ccccc
Confidence 3558999999999999999999999999999999877889999999998 65553
No 80
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.40 E-value=2.8e-05 Score=71.70 Aligned_cols=247 Identities=18% Similarity=0.155 Sum_probs=174.6
Q ss_pred HHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcC--Ch
Q 017402 111 TQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFG--SP 188 (372)
Q Consensus 111 ~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~--~~ 188 (372)
..|..+-...+..+..+.-.-..+.+..++- +++.+++..+.++++.+..+.+.-..+.+.+.--.++.-|..+ +.
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL--~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~ 82 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLL--SDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKND 82 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCCh
Confidence 3445555556656666555555666665555 4559999999999999998988888888888777888888664 56
Q ss_pred HHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh
Q 017402 189 DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD 268 (372)
Q Consensus 189 ~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~ 268 (372)
.-|++|...+..+.....+...+- .|++..++......++ ..+..++.+|+.++..+ -+.++++||+..|++.+-
T Consensus 83 ~ER~QALkliR~~l~~~~~~~~~~--~~vvralvaiae~~~D-~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~ 157 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPKEIP--RGVVRALVAIAEHEDD-RLRRICLETLCELALLN--PELVAECGGIRVLLRALI 157 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCC--HHHHHHHHHHHhCCch-HHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHH
Confidence 678899999999876654444443 4899999999999888 99999999999999743 245678999999999985
Q ss_pred hh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcC-------Ch--hHHHhHHHHHHHHhcCCHHHHHHHH
Q 017402 269 AG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTG-------SS--RAVQCSLFTLSCLCCCSQEICGDSR 335 (372)
Q Consensus 269 ~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~-------~~--~~~~~a~~~L~~l~~~~~~~~~~~~ 335 (372)
++ .+..+.++-.+-..+..|..+.. +--++.+..-+.+. +. ..-+.+..++..+-+.=+..-.--.
T Consensus 158 d~~~~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~ 236 (371)
T PF14664_consen 158 DGSFSISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM 236 (371)
T ss_pred hccHhHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence 44 67788888999999999988777 23355554444322 11 1224444555554332121111111
Q ss_pred hc-ChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 336 KE-GVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 336 ~~-g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
.. .+++.|+..+...++++|+....++--+
T Consensus 237 ~~~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11 4788899999999999999988887533
No 81
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00021 Score=65.00 Aligned_cols=234 Identities=18% Similarity=0.176 Sum_probs=174.5
Q ss_pred HHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc---cc-------cccccccCChH
Q 017402 108 ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD---DN-------KVGLVAEGAVS 177 (372)
Q Consensus 108 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~---~~-------~~~i~~~g~i~ 177 (372)
..++.+.-++. -|+....+++.++|+.|+.+|. +.+.++....+..|..|...+ ++ ..++++.++++
T Consensus 103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLg--HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vla 179 (536)
T KOG2734|consen 103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLG--HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLA 179 (536)
T ss_pred HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhc--CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHH
Confidence 45666777776 6888889999999999999999 899999999999999987542 11 23667789999
Q ss_pred HHHHHHhcCChH------HHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcC-CchHHHHHHHHHHHhhcCCC-
Q 017402 178 RVVAALRFGSPD------CRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNG-KLIREKKEAATALYALTSFP- 248 (372)
Q Consensus 178 ~lv~~L~~~~~~------~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~- 248 (372)
.|++-++.-|.. ........+.|+.... +....+++ .|.+..|+.-+... .....+..|..+|.-+-.+.
T Consensus 180 LLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~ 258 (536)
T KOG2734|consen 180 LLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD 258 (536)
T ss_pred HHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence 999988764433 3455667777887655 56666777 58888888866543 22367788888888876654
Q ss_pred chhHHHHhcCchHHHHHHH-----hhh--------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHh
Q 017402 249 ENRKRVVSCGAVPILMRLA-----DAG--------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQC 315 (372)
Q Consensus 249 ~~~~~i~~~g~v~~L~~ll-----~~~--------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~ 315 (372)
+++.....-.+|+.+++-+ ..+ .++....|+.+...+.++..+.. +.++....-+++. ....+..
T Consensus 259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lmlr~-Kk~sr~S 336 (536)
T KOG2734|consen 259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQLMNLMLRE-KKVSRGS 336 (536)
T ss_pred hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHHHHHHHHH-HHHhhhh
Confidence 5888888889999999887 111 45667777777789999999999 4556554444433 4566788
Q ss_pred HHHHHHHHhcCCH--HHHHHHHhcChhHHHHHHh
Q 017402 316 SLFTLSCLCCCSQ--EICGDSRKEGVLDICMGLL 347 (372)
Q Consensus 316 a~~~L~~l~~~~~--~~~~~~~~~g~~~~l~~ll 347 (372)
|.++|-....+.+ .++..+++.+++..+..+.
T Consensus 337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 9999988776644 8889999988777777654
No 82
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.37 E-value=9.9e-06 Score=76.85 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=125.8
Q ss_pred CCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHH
Q 017402 100 SSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSR 178 (372)
Q Consensus 100 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~ 178 (372)
..|.+.+..|+..+.+++..-...+..+....+..+|+++|. .++..++..++++|.|+..+ .+.|..+...|+|+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~--dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~ 465 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM--DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI 465 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh--CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence 356778888888888888755556777777899999999997 78889999999999999888 788999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccc-hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC-chhHHHHh
Q 017402 179 VVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY-AINALVSLLQNGKLIREKKEAATALYALTSFP-ENRKRVVS 256 (372)
Q Consensus 179 lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~ 256 (372)
+.+++.+.+..++..+.|+|.++..+.+...+..-... ....++.+..+++. .+++.+...|+||.-+. +....+++
T Consensus 466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~-~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDW-AVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCH-HHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 99999999999999999999999988866555432223 33455566666666 99999999999997654 56666665
Q ss_pred c
Q 017402 257 C 257 (372)
Q Consensus 257 ~ 257 (372)
.
T Consensus 545 ~ 545 (678)
T KOG1293|consen 545 K 545 (678)
T ss_pred h
Confidence 4
No 83
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.36 E-value=7e-05 Score=71.28 Aligned_cols=279 Identities=12% Similarity=0.063 Sum_probs=187.0
Q ss_pred CCCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCC-hhHHHHHHHHHhcCCCC
Q 017402 85 ANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDG-FTLQEKALSLLLNLSLD 163 (372)
Q Consensus 85 ~~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~-~~~~~~a~~~L~~l~~~ 163 (372)
.-..+|.+..++.....+++.+.+.+..+..+..+.......+.+.+.++.|+++|. +.+ ..+++..++.+.++...
T Consensus 49 k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs--~sD~~~~le~~l~~lR~Ifet 126 (678)
T KOG1293|consen 49 KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLS--ESDSLNVLEKTLRCLRTIFET 126 (678)
T ss_pred hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhc--CcchHhHHHHHHHHHHHHHhc
Confidence 344556777887777667788878888888888878888999999999999999999 555 77999999999997655
Q ss_pred cccccccc---ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402 164 DDNKVGLV---AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA 240 (372)
Q Consensus 164 ~~~~~~i~---~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 240 (372)
...+.... ....+..+..++..+.......-+....+++...+.+....+ .|+.+.+.-++...+. ..+..|+..
T Consensus 127 ~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~N-a~i~ekI~~l~~~~s~-~~RlaaL~~ 204 (678)
T KOG1293|consen 127 SKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCN-AGILEKINILLMYLSS-KLRLAALLC 204 (678)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheecc-ccchhhHHHHHHhhhH-HHHHHHHHH
Confidence 43333222 245666666666546666666677777777777666666666 6776666666555444 677777777
Q ss_pred HH---hhcCCCc-hhHHHH----hcCchHH--HHHHHhhh----HHHHH-------------------------------
Q 017402 241 LY---ALTSFPE-NRKRVV----SCGAVPI--LMRLADAG----LERAV------------------------------- 275 (372)
Q Consensus 241 L~---~L~~~~~-~~~~i~----~~g~v~~--L~~ll~~~----~e~a~------------------------------- 275 (372)
++ ++..+++ ....++ ..|..+. +.+++.++ +..++
T Consensus 205 ~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~ 284 (678)
T KOG1293|consen 205 LSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIV 284 (678)
T ss_pred hhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHH
Confidence 77 5555443 322222 2233331 11221100 00000
Q ss_pred -----------------------------------------------------------------------HHHHHHhCC
Q 017402 276 -----------------------------------------------------------------------EVLSILVKC 284 (372)
Q Consensus 276 -----------------------------------------------------------------------~~L~~L~~~ 284 (372)
.++..++.+
T Consensus 285 q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~ 364 (678)
T KOG1293|consen 285 QYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYG 364 (678)
T ss_pred HHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhh
Confidence 000000000
Q ss_pred H--hHHH--------------------------------------HH---HhccchHHHHHHHHhcCChhHHHhHHHHHH
Q 017402 285 K--EGRE--------------------------------------EM---MRVSGCVGVFVKMLKTGSSRAVQCSLFTLS 321 (372)
Q Consensus 285 ~--~~~~--------------------------------------~i---~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 321 (372)
. ..++ .+ ..+..+..+|+.++..++..++..+.++|.
T Consensus 365 ~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~ 444 (678)
T KOG1293|consen 365 LEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAIC 444 (678)
T ss_pred cchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHH
Confidence 0 0000 00 112456788889998888899999999999
Q ss_pred HHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 322 CLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 322 ~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
|+.-.....+..+++.|+++.+...+.+.++.+|..+.|.|+.+.-
T Consensus 445 NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 445 NLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 9998778899999999999999999999999999999999987654
No 84
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=9.4e-06 Score=77.04 Aligned_cols=268 Identities=13% Similarity=0.109 Sum_probs=173.2
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHh-h---cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLT-E---SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~---~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 165 (372)
|.|..+|.+. +...+..|+.+|.+++.++.+.-+.=. . .-.+|.++++.+ +.++.++..|+.++..+-...
T Consensus 131 p~L~~~L~s~--d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~--h~spkiRs~A~~cvNq~i~~~- 205 (885)
T KOG2023|consen 131 PQLCELLDSP--DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK--HPSPKIRSHAVGCVNQFIIIQ- 205 (885)
T ss_pred HHHHHHhcCC--cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh--CCChhHHHHHHhhhhheeecC-
Confidence 5677788765 566778899999999987765433211 1 135788889999 789999999999987754332
Q ss_pred ccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 166 NKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 166 ~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
++..+.. ...++.+-.+-.+.++++|++.|.++..|......|..-.- .++|+.++...++.++ ++.-+|+.....+
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE-~VALEACEFwla~ 283 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDE-NVALEACEFWLAL 283 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcch-hHHHHHHHHHHHH
Confidence 2222222 33455555555667999999999999999866544444333 5899999999998888 8999999999999
Q ss_pred cCCCchhHHHHhc--CchHHHHHHH----------h---hh-----HHH------------H------------------
Q 017402 245 TSFPENRKRVVSC--GAVPILMRLA----------D---AG-----LER------------A------------------ 274 (372)
Q Consensus 245 ~~~~~~~~~i~~~--g~v~~L~~ll----------~---~~-----~e~------------a------------------ 274 (372)
+..+-.+..+... ..||.|+.-+ . ++ +|. .
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 9888554444432 3556555422 1 00 000 0
Q ss_pred -HHHHHHHhCCHhH---------HHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhc--ChhHH
Q 017402 275 -VEVLSILVKCKEG---------REEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE--GVLDI 342 (372)
Q Consensus 275 -~~~L~~L~~~~~~---------~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~~~~ 342 (372)
...=+||-++... ++++.. -.+|.|-+.|.+..=.+++.++-+|..++.+. -+-|... -.++.
T Consensus 364 D~~~dWNLRkCSAAaLDVLanvf~~elL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p~LpeLip~ 438 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLANVFGDELLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVPHLPELIPF 438 (885)
T ss_pred cccccccHhhccHHHHHHHHHhhHHHHHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhcccchHHHHHH
Confidence 0000122222111 112222 13444444454455578899999999887542 2222221 27899
Q ss_pred HHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 343 CMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 343 l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
|+.++.+-.+-||.-.+|.|+.++.+.
T Consensus 439 l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 439 LLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHhccCccceeeeeeeeHhhhhhhH
Confidence 999999999999999999998776653
No 85
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00013 Score=73.82 Aligned_cols=244 Identities=16% Similarity=0.120 Sum_probs=155.4
Q ss_pred CCChHHHHHHHHHHHHHhhcChHHHHHHhhc--CCHHHHHHHHhhcCCC--------------hhHHHHHHHHHhcCCCC
Q 017402 100 SSPLESKLESLTQLTKLSKRDSASRRKLTES--GAVSAVLNCLKIHSDG--------------FTLQEKALSLLLNLSLD 163 (372)
Q Consensus 100 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~--------------~~~~~~a~~~L~~l~~~ 163 (372)
.-++..|..|+..|..+++.-+...+..... -.++.++.++.....+ ..--..|.++|-.++.+
T Consensus 260 ~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~ 339 (1075)
T KOG2171|consen 260 ELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALH 339 (1075)
T ss_pred cccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhc
Confidence 3456788899999998887544333333222 2344444444311011 11344556666666655
Q ss_pred ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402 164 DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA 243 (372)
Q Consensus 164 ~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~ 243 (372)
=..+. +-.-.++.+-.+|.+.+-.-|..+..+|..++... .+.++.....+++..++.|+++++ .++..|+.++..
T Consensus 340 L~g~~--v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc-~~~m~~~l~~Il~~Vl~~l~Dphp-rVr~AA~naigQ 415 (1075)
T KOG2171|consen 340 LGGKQ--VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGC-SDVMIGNLPKILPIVLNGLNDPHP-RVRYAALNAIGQ 415 (1075)
T ss_pred CChhh--ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHh
Confidence 22222 11234566667777888999999999999987543 333344445788888899998888 999999999999
Q ss_pred hcCC-CchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhH-HHHHHhccchHH-HHHHHHhcCChhHHHh
Q 017402 244 LTSF-PENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEG-REEMMRVSGCVG-VFVKMLKTGSSRAVQC 315 (372)
Q Consensus 244 L~~~-~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~-~~~i~~~~g~i~-~L~~ll~~~~~~~~~~ 315 (372)
++.+ ....++-...-.++.|+..+++. ..+|+.++-|++..-.+ .-.-.- ++.+. .+..+++++++.+++.
T Consensus 416 ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~ 494 (1075)
T KOG2171|consen 416 MSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQ 494 (1075)
T ss_pred hhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHH
Confidence 9985 34555555556777888888665 45677777777763222 111111 34565 5555667789999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHh--cChhHHHHHHhhccc
Q 017402 316 SLFTLSCLCCCSQEICGDSRK--EGVLDICMGLLEDDN 351 (372)
Q Consensus 316 a~~~L~~l~~~~~~~~~~~~~--~g~~~~l~~ll~~~~ 351 (372)
++.+|..++.... ..++. .-.++.|..++++.+
T Consensus 495 vvtaIasvA~AA~---~~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 495 AVTAIASVADAAQ---EKFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHHHHHHHh---hhhHhHHHHHHHHHHHHHhCCC
Confidence 9999999885422 22322 236888888888765
No 86
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=3.4e-05 Score=67.01 Aligned_cols=195 Identities=15% Similarity=0.117 Sum_probs=137.3
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc-ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc
Q 017402 134 SAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG 212 (372)
Q Consensus 134 ~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 212 (372)
..++.+|. +.++.++..|..-+.+++.. ..+.... +.-.++.+.+++....+ ...|+.+|.|++.....+..+.
T Consensus 6 ~elv~ll~--~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLH--SLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHhc--cCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45788888 88999999999999998766 3332221 24577888888876555 6778999999998888888887
Q ss_pred cccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH---h----cCchHHHHHHHhhh------HHHHHHHHH
Q 017402 213 DYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV---S----CGAVPILMRLADAG------LERAVEVLS 279 (372)
Q Consensus 213 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~---~----~g~v~~L~~ll~~~------~e~a~~~L~ 279 (372)
.. .+..++.++.+... ......+.+|.||++.++....+. . .|.+.......+.+ -.....++.
T Consensus 81 ~~--~~k~l~~~~~~p~~-~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 81 QD--LLKVLMDMLTDPQS-PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HH--HHHHHHHHhcCccc-chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 73 89999999988866 788899999999999887655443 2 33444444444443 356789999
Q ss_pred HHhCCHhHHHHHHhccchHHHHHHHHhcCChhHH-HhHHHHHHHHhcCCHHHHHHHHhc
Q 017402 280 ILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAV-QCSLFTLSCLCCCSQEICGDSRKE 337 (372)
Q Consensus 280 ~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~ 337 (372)
||+..+.||..+....-........+...+..+| ...+++|.|+|.. ......++..
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd-~~~h~~lL~e 215 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFD-AKLHEVLLDE 215 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhcc-chhHHHHhcc
Confidence 9999999999998833222222222233334444 5778899998765 4444555443
No 87
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=3.5e-05 Score=77.64 Aligned_cols=225 Identities=14% Similarity=0.102 Sum_probs=139.1
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccc
Q 017402 94 SVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVA 172 (372)
Q Consensus 94 ~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~ 172 (372)
+.|.+ .+...|..|+.+|..++.+..+.-.... ..+++.++..|. +.++.+|..|+.+++.++.+ ...-..-..
T Consensus 355 ~~l~S--~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~--DphprVr~AA~naigQ~stdl~p~iqk~~~ 429 (1075)
T KOG2171|consen 355 AMLQS--TEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLN--DPHPRVRYAALNAIGQMSTDLQPEIQKKHH 429 (1075)
T ss_pred HHhcC--CCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcC--CCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence 44444 3788899999999999987654332221 146777778888 88999999999999999988 333333344
Q ss_pred cCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCch-
Q 017402 173 EGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPEN- 250 (372)
Q Consensus 173 ~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~- 250 (372)
.-.++.|+..+.+ +++.++..|+.++.|++..........-..+.+..++.+|...+.+.+++.++.+|...+..-+.
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 6677889999876 57899999999999998654333222222356664555555555559999999999988753322
Q ss_pred -hHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhC--CHhHHHHHHhcc-chHHHHHHH---HhcCChhHHHhHHH
Q 017402 251 -RKRVVSCGAVPILMRLADAG-----LERAVEVLSILVK--CKEGREEMMRVS-GCVGVFVKM---LKTGSSRAVQCSLF 318 (372)
Q Consensus 251 -~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~--~~~~~~~i~~~~-g~i~~L~~l---l~~~~~~~~~~a~~ 318 (372)
..++ .-.+|.|...|... ++...+.+..++. ..-|++.+.... ..+..+..+ ....+...+.....
T Consensus 510 F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 510 FIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIA 587 (1075)
T ss_pred hHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHH
Confidence 2222 12556666666322 2222222222222 245566665531 234444444 22233444556565
Q ss_pred HHHHHhc
Q 017402 319 TLSCLCC 325 (372)
Q Consensus 319 ~L~~l~~ 325 (372)
....+|+
T Consensus 588 ~warmc~ 594 (1075)
T KOG2171|consen 588 FWARMCR 594 (1075)
T ss_pred HHHHHHH
Confidence 6666665
No 88
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.28 E-value=9.1e-07 Score=75.32 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=57.2
Q ss_pred ccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402 9 FKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 75 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~ 75 (372)
+.||+|..++++|+.+ +|||+||..||...+....+.||.|....--...+.|+...+..++.+.+.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 8999999999999977 699999999999988877899999987543356788888888888887763
No 89
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.25 E-value=6.7e-07 Score=83.00 Aligned_cols=70 Identities=27% Similarity=0.598 Sum_probs=55.6
Q ss_pred CCCCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc-cHHHHHHHHHHhc
Q 017402 3 TQFPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP-NHALRSLISNFTR 74 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~-n~~l~~~i~~~~~ 74 (372)
..+++++.||+|..++.+|+.. .|||.||+.|+..|... ...||.|+.... .....+ ....++.+..+..
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~-~~~~~~~~~~~~~~~~~l~i 87 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELT-QAEELPVPRALRRELLKLPI 87 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccc-hhhccCchHHHHHHHHhccc
Confidence 3467889999999999999994 89999999999999987 889999988877 433333 4555665555543
No 90
>PTZ00429 beta-adaptin; Provisional
Probab=98.23 E-value=0.00048 Score=69.10 Aligned_cols=248 Identities=14% Similarity=0.076 Sum_probs=154.4
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
++.+..+.+. +.+.|+=..-.|.+++..+++..- -.+..+.+=+. +.++.++..|+++|.++-..+ .-
T Consensus 71 ~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~--d~Np~IRaLALRtLs~Ir~~~-i~-- 138 (746)
T PTZ00429 71 VDVVKLAPST--DLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTT--NSSPVVRALAVRTMMCIRVSS-VL-- 138 (746)
T ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcC--CCCHHHHHHHHHHHHcCCcHH-HH--
Confidence 4555555433 666666666666666665443211 12445555555 678889999999999875321 11
Q ss_pred ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc
Q 017402 170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE 249 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~ 249 (372)
.-.++.+.+.+.+.++.+|+.|+.++..+-..+. ..+.. .|.++.|.++|.+.+. .+..+|+.+|..+.....
T Consensus 139 ---e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~-~~~~~~L~~LL~D~dp-~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 139 ---EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQ-QDFKKDLVELLNDNNP-VVASNAAAIVCEVNDYGS 211 (746)
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccc-cchHHHHHHHhcCCCc-cHHHHHHHHHHHHHHhCc
Confidence 2245667788888999999999999999864332 33444 5899999999988777 999999999999986543
Q ss_pred hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402 250 NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324 (372)
Q Consensus 250 ~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 324 (372)
..- -...+.+..|+..+.+. +-..+.+| +.. +...... ...+..+...+++.++.+.-.|++++.++.
T Consensus 212 ~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 212 EKI-ESSNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred hhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 221 12334555666666432 33344444 332 1111111 235677777788888888999999988887
Q ss_pred cCC-HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 325 CCS-QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 325 ~~~-~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
... ++....+.. .+...++.++ ++++++|--+.+-|..+
T Consensus 285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 285 SRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHAL 324 (746)
T ss_pred CcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHH
Confidence 542 332222211 1234555553 45667777776666544
No 91
>PF05536 Neurochondrin: Neurochondrin
Probab=98.21 E-value=9.1e-05 Score=71.97 Aligned_cols=155 Identities=19% Similarity=0.136 Sum_probs=123.9
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHH---HHHHhhcCCHHHHHHHHhhcC-----CChhHHHHHHHHHhcCC
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSAS---RRKLTESGAVSAVLNCLKIHS-----DGFTLQEKALSLLLNLS 161 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~i~~~g~i~~L~~lL~~~~-----~~~~~~~~a~~~L~~l~ 161 (372)
++.+.+|+.. +.+.|.-++-.+.++...++.. ++.+.++=|.+.+-++|++.. +....+.-|+.+|..++
T Consensus 8 ~~c~~lL~~~--~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 8 EKCLSLLKSA--DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHhccC--CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4567788776 4677899999999999876633 445778766899999998421 33567899999999999
Q ss_pred CCccccccccccCChHHHHHHHhcCCh-HHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402 162 LDDDNKVGLVAEGAVSRVVAALRFGSP-DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA 240 (372)
Q Consensus 162 ~~~~~~~~i~~~g~i~~lv~~L~~~~~-~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 240 (372)
.+++....=--.+.||.|++.+.+.+. ++...+...|..++..++++..+.+ .|+|+.|++.+.+.. ...+.|+.+
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~~~--~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPNQS--FQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHhCc--chHHHHHHH
Confidence 976654432225789999999988766 9999999999999999999999998 799999999998843 578999999
Q ss_pred HHhhcCCCc
Q 017402 241 LYALTSFPE 249 (372)
Q Consensus 241 L~~L~~~~~ 249 (372)
|.++.....
T Consensus 163 L~~Lls~~~ 171 (543)
T PF05536_consen 163 LLNLLSRLG 171 (543)
T ss_pred HHHHHHhcc
Confidence 999876443
No 92
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.1e-06 Score=78.20 Aligned_cols=46 Identities=30% Similarity=0.550 Sum_probs=39.8
Q ss_pred ccccCCcccCCCc---eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDP---VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~P---v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+.|.||++-|.+= +.++|+|.|+..||..|+.+....||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 5899999988743 368999999999999999987677999998766
No 93
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.14 E-value=8e-06 Score=49.72 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=38.2
Q ss_pred CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 327 SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 327 ~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
++++++.+++.|+++.|+.+++++++++++.|.++|++|..
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47889999999999999999999999999999999999863
No 94
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00031 Score=61.73 Aligned_cols=262 Identities=10% Similarity=0.083 Sum_probs=172.8
Q ss_pred ChHHHHHHHHHHHHHhhcChHHH----HHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChH
Q 017402 102 PLESKLESLTQLTKLSKRDSASR----RKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVS 177 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~----~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~ 177 (372)
+..++.-+.+.+..+..+.+.|. ..++.+|.++.++..+. ..+.++-..|...|..++.-+..-+.+......+
T Consensus 95 dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg--geddeVAkAAiesikrialfpaaleaiFeSellD 172 (524)
T KOG4413|consen 95 DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG--GEDDEVAKAAIESIKRIALFPAALEAIFESELLD 172 (524)
T ss_pred cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc--CCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCC
Confidence 45566667777777666544332 23457899999999998 7889999999999999999888888888776655
Q ss_pred HHH--HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH
Q 017402 178 RVV--AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV 255 (372)
Q Consensus 178 ~lv--~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 255 (372)
.+- .+-...+.-+|-.....+..+.+.......-....|.+..|..-++...+.-++.+++.....|+....+++.+.
T Consensus 173 dlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefla 252 (524)
T KOG4413|consen 173 DLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLA 252 (524)
T ss_pred hHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcc
Confidence 543 222233455566666677766554432222233379999998888875554788899999999999999999999
Q ss_pred hcCchHHHHHHHh---hh---HHHHHHHHH----HHhCCHhHHHHHHh-ccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402 256 SCGAVPILMRLAD---AG---LERAVEVLS----ILVKCKEGREEMMR-VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324 (372)
Q Consensus 256 ~~g~v~~L~~ll~---~~---~e~a~~~L~----~L~~~~~~~~~i~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 324 (372)
+.|.|+.+..++. ++ .-.++.... +..-.+..-+++++ ..-+++...+++...++...+.|..++..+-
T Consensus 253 QeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilG 332 (524)
T KOG4413|consen 253 QEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILG 332 (524)
T ss_pred hhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhcc
Confidence 9999999999883 33 222443333 33332322233333 1123555567777789999999999999887
Q ss_pred cCCHHHHHHHHhcC--hhHHHHHHhhcccHHH-HHHHHHHHHHHh
Q 017402 325 CCSQEICGDSRKEG--VLDICMGLLEDDNEKV-RRNANNLIQTLS 366 (372)
Q Consensus 325 ~~~~~~~~~~~~~g--~~~~l~~ll~~~~~~v-~~~a~~~L~~l~ 366 (372)
+. .+..+.+.+.| ..+.++.-.-+.+... ++.+..+|..+.
T Consensus 333 Sn-teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 333 SN-TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred CC-cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 66 77778888776 3444443333332222 344555555443
No 95
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.0013 Score=66.16 Aligned_cols=257 Identities=18% Similarity=0.203 Sum_probs=171.6
Q ss_pred CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402 86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165 (372)
Q Consensus 86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 165 (372)
.+.++-+...|... +++.++.-|+..+..+... .+.-..+++.|.+..|+.+|- .-+..++.++.+|..|+...+
T Consensus 1770 ig~F~l~~~~lr~~-~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL~lLH---S~PS~R~~vL~vLYAL~S~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCR-KHPKLQILALQVILLATAN-KECVTDLATCNVLTTLLTLLH---SQPSMRARVLDVLYALSSNGQ 1844 (2235)
T ss_pred hcccHHHHHHHHHc-CCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHHHHHh---cChHHHHHHHHHHHHHhcCcH
Confidence 34455566677665 5778888899999988874 457888899998888999886 668899999999999998877
Q ss_pred ccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhccccc--chhhhcc-----------------------------
Q 017402 166 NKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEV--NKATIGD----------------------------- 213 (372)
Q Consensus 166 ~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~--~~~~i~~----------------------------- 213 (372)
.-..-.+.|++.-+..++-. .++..|.+++..+..|....- .+..|.-
T Consensus 1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence 66666678888888877754 467777888888877754321 1111100
Q ss_pred ----------------------------------------------------------------------------ccch
Q 017402 214 ----------------------------------------------------------------------------YPYA 217 (372)
Q Consensus 214 ----------------------------------------------------------------------------~~g~ 217 (372)
..|.
T Consensus 1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence 0111
Q ss_pred HHHHHHHhhcCCc-hHHHHHHHHHHHhhcC-CCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHH
Q 017402 218 INALVSLLQNGKL-IREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEM 291 (372)
Q Consensus 218 i~~Lv~ll~~~~~-~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i 291 (372)
++.+++++..... ......-..++..|.. ++.-..++-..|.+|.++..+... ...|+.+|..|+.+.-+.+++
T Consensus 2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AM 2084 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAM 2084 (2235)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHH
Confidence 2222222222211 1122222233444444 334445555668888888877322 677999999999999999988
Q ss_pred HhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhhc
Q 017402 292 MRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLED 349 (372)
Q Consensus 292 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~~ 349 (372)
.. ..++..++..|+... ..--.|+.+|-.+-.... +....+++.|.++.|+.+++.
T Consensus 2085 A~-l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2085 AQ-LPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred hc-cccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 88 446666777776532 223377777777665433 666778899999999999974
No 96
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.10 E-value=2.9e-06 Score=51.70 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=37.5
Q ss_pred ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCC
Q 017402 120 DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLS 161 (372)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~ 161 (372)
++++++.+++.|+++.|+++|+ +.+.++++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence 4679999999999999999999 899999999999999986
No 97
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.09 E-value=4.2e-05 Score=69.97 Aligned_cols=175 Identities=13% Similarity=0.184 Sum_probs=134.3
Q ss_pred ccccccCChHHHHHHHhcCChH--HHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 168 VGLVAEGAVSRVVAALRFGSPD--CRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~~~~~~--~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
..|...|+++.|++++..++.+ ++..++.+|..+.. .+|++.++. .| ...++.+.+....++.....+..|.++.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~-~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVAR-IG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhh-cc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 4555689999999999887654 58899999998753 578888877 34 6666666666666688899999999999
Q ss_pred CCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC--CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHH
Q 017402 246 SFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK--CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLF 318 (372)
Q Consensus 246 ~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~--~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~ 318 (372)
.+. +....++++|+++.++.-.... ..+++-+|.|.+. +.+++..+++ ..+-+-|.-+-.+.++..+-+|+.
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHHHH
Confidence 965 5889999999999888766332 5678888888776 5678888888 567777777777778888899999
Q ss_pred HHHHHhcCCHHHHHHHHhcCh---hHHHHHHh
Q 017402 319 TLSCLCCCSQEICGDSRKEGV---LDICMGLL 347 (372)
Q Consensus 319 ~L~~l~~~~~~~~~~~~~~g~---~~~l~~ll 347 (372)
+...++.. .+.-.++.+.|- ++.++..+
T Consensus 330 AV~vlat~-KE~E~~VrkS~TlaLVEPlva~~ 360 (832)
T KOG3678|consen 330 AVAVLATN-KEVEREVRKSGTLALVEPLVASL 360 (832)
T ss_pred HHhhhhhh-hhhhHHHhhccchhhhhhhhhcc
Confidence 99988876 677677777773 44444443
No 98
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.06 E-value=5.8e-06 Score=57.65 Aligned_cols=44 Identities=27% Similarity=0.625 Sum_probs=32.1
Q ss_pred ccCCcccCCC-cee-cCCchHhhHHHHHHHHhc--CCCCCCCCCCCCC
Q 017402 11 CPISLEIMSD-PVI-LSSGHTFDRASIQRWLDS--GHRTCPITKLPLP 54 (372)
Q Consensus 11 C~ic~~~~~~-Pv~-~~cgh~~c~~ci~~~~~~--~~~~CP~c~~~~~ 54 (372)
||.|...-.+ |++ -.|+|.|+..||.+|+.+ ++.+||.||++..
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4444443323 544 479999999999999985 3579999998765
No 99
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.05 E-value=0.0006 Score=64.91 Aligned_cols=226 Identities=16% Similarity=0.139 Sum_probs=152.8
Q ss_pred CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcC---CChhHHHHHHHHHhcCCCC-ccccccccc-cCC
Q 017402 101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHS---DGFTLQEKALSLLLNLSLD-DDNKVGLVA-EGA 175 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~---~~~~~~~~a~~~L~~l~~~-~~~~~~i~~-~g~ 175 (372)
.+.++..+|++.|.|....++..|+.+.+.|+.+.+++.|+... .+.++.-...++|.-++.. .+.+..+++ .++
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~ 123 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHG 123 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Confidence 46788999999999999999999999999999999999999531 2678888899999887654 555655555 588
Q ss_pred hHHHHHHHhc-----------------CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcC-------C-c
Q 017402 176 VSRVVAALRF-----------------GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG-------K-L 230 (372)
Q Consensus 176 i~~lv~~L~~-----------------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-------~-~ 230 (372)
+..++..|.. .+......+..+++|+......... ....+.++.|+.++..- . .
T Consensus 124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 8888887732 1233456688899999766543332 12235666666665422 1 1
Q ss_pred hHHHHHHHHHHHhhcCCC-ch-------hHH----HHhcCchHHHHHHHhhh---------HHH---HHHHHHHHhCC-H
Q 017402 231 IREKKEAATALYALTSFP-EN-------RKR----VVSCGAVPILMRLADAG---------LER---AVEVLSILVKC-K 285 (372)
Q Consensus 231 ~~~~~~a~~aL~~L~~~~-~~-------~~~----i~~~g~v~~L~~ll~~~---------~e~---a~~~L~~L~~~-~ 285 (372)
......+..+|.|+=... .. ... ......+..|+.+|+.. .+. .+.+|..++.. .
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 256778888888872210 01 101 11223567788888543 122 46777777775 3
Q ss_pred hHHHHHHh---------------ccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402 286 EGREEMMR---------------VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS 327 (372)
Q Consensus 286 ~~~~~i~~---------------~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 327 (372)
..|+.+.. ....-..|++++.+..+.++..+...|+.+|..+
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 33443332 2345678999998877999999999999999653
No 100
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.03 E-value=0.0012 Score=59.98 Aligned_cols=236 Identities=17% Similarity=0.134 Sum_probs=166.6
Q ss_pred CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc-------cCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 017402 132 AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA-------EGAVSRVVAALRFGSPDCRAIAATIITSLAVV 204 (372)
Q Consensus 132 ~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-------~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~ 204 (372)
.+..++.++.. ...++.....+..+-.+-..+..+..+.. .-.-...+.+|..++.-+...+.+++..++..
T Consensus 66 ~v~~fi~LlS~-~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 66 YVKTFINLLSH-IDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHhch-hhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 45666777763 23456677777777665555544443332 22367788899888888888899999999876
Q ss_pred ccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh------HHHHHHHH
Q 017402 205 EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG------LERAVEVL 278 (372)
Q Consensus 205 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L 278 (372)
...+....+..=....|-..+++..+.+....|+++|-.+...++.|..++.+.++..++..+.+. +=..+..+
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 654444333111233344445553333788899999999999999999999999999999999432 34578888
Q ss_pred HHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCH------HHHHHHHhcChhHHHHHHhhc--
Q 017402 279 SILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQ------EICGDSRKEGVLDICMGLLED-- 349 (372)
Q Consensus 279 ~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~g~~~~l~~ll~~-- 349 (372)
+.|..++...+.+ ...+.++.|..+++. ..+++.+-.+.++.|++..++ +....|+..++.+.+-.+.+-
T Consensus 225 WlLtFn~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky 303 (442)
T KOG2759|consen 225 WLLTFNPHAAEKL-KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY 303 (442)
T ss_pred HHhhcCHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence 9999988888777 447899999999976 467888899999999987764 555677777776666666554
Q ss_pred ccHHHHHHHHHHHHHHhcCC
Q 017402 350 DNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 350 ~~~~v~~~a~~~L~~l~~~~ 369 (372)
+++++...-..+-..|.++.
T Consensus 304 sDEDL~~di~~L~e~L~~sv 323 (442)
T KOG2759|consen 304 SDEDLVDDIEFLTEKLKNSV 323 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 46777776666666665543
No 101
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.02 E-value=4e-05 Score=55.42 Aligned_cols=88 Identities=28% Similarity=0.317 Sum_probs=71.6
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc
Q 017402 133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG 212 (372)
Q Consensus 133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 212 (372)
|+.|++.|.+ +.++.++..++.+|..+. ....++.|+.+++++++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~-~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQN-DPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHT-SSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhc-CCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 6789999943 689999999999999552 2255899999999999999999999999872
Q ss_pred cccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402 213 DYPYAINALVSLLQNGKLIREKKEAATALY 242 (372)
Q Consensus 213 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 242 (372)
. ..+++.|.+++.++++..++..|..+|+
T Consensus 60 ~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 D-PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp H-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2 4689999999998776456888888874
No 102
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.00 E-value=0.001 Score=58.21 Aligned_cols=222 Identities=19% Similarity=0.138 Sum_probs=157.7
Q ss_pred CChhHHHHHHHHHhcCCCCccccccccc-cCChHHHHHHHhc--CChHHHHHHHHHHHHhcccccchhhhccccchHHHH
Q 017402 145 DGFTLQEKALSLLLNLSLDDDNKVGLVA-EGAVSRVVAALRF--GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINAL 221 (372)
Q Consensus 145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~g~i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~L 221 (372)
-+.-.+.-|.+++.++....+.|..+-. ...-..+++.+++ ++.+++-+..-.++-++...+..+.|-..-..|.-|
T Consensus 161 i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 161 IDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3455788999999999999887765443 4456678888876 678899999999999998777665665544688888
Q ss_pred HHHhhcCCchHHHHHHHHHHHhhcC-CC-chhHHHHhcCchHHHHHHHhhh---HHHHH-------HHH-----------
Q 017402 222 VSLLQNGKLIREKKEAATALYALTS-FP-ENRKRVVSCGAVPILMRLADAG---LERAV-------EVL----------- 278 (372)
Q Consensus 222 v~ll~~~~~~~~~~~a~~aL~~L~~-~~-~~~~~i~~~g~v~~L~~ll~~~---~e~a~-------~~L----------- 278 (372)
+.+.+...-..+..-++..+.|++. .+ .....+.-.|-+..-++.|... .|... ..|
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 8888875433788889999999887 32 3445555556566666666222 11111 111
Q ss_pred ---HHHhC--------------CHhHHHHHHhc-cchHHHHHHHHhcCChh-HHHhHHHHHHHHhcCCHHHHHHHHhcCh
Q 017402 279 ---SILVK--------------CKEGREEMMRV-SGCVGVFVKMLKTGSSR-AVQCSLFTLSCLCCCSQEICGDSRKEGV 339 (372)
Q Consensus 279 ---~~L~~--------------~~~~~~~i~~~-~g~i~~L~~ll~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 339 (372)
..|-. ...+.+.+.+. -..+..|.++++...+. ...-|+.=+..+....|+....+.+-|+
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~ 400 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV 400 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence 11100 12333344442 23578889999886655 4467777788888888999999999999
Q ss_pred hHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 340 LDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 340 ~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
=+.+++++.+++++||-.|..++..+-
T Consensus 401 k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 401 KEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999987653
No 103
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00091 Score=67.14 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHhhc----CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402 105 SKLESLTQLTKLSKRDSASRRKLTES----GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV 180 (372)
Q Consensus 105 ~~~~a~~~L~~l~~~~~~~~~~i~~~----g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv 180 (372)
-..-++.+|+|+...+++....+... |.-+.+...|+. .+++.++..|+.++..+..+.+.-..+++.|.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~-~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRC-RKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHH-cCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence 34568999999999888777766543 666777777775 3788899999999999999999989999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
.+| ++-+..|..+..+|+.|+++.+..+...+ .|++..+..++-.....+.+..|+..+..|..++
T Consensus 1820 ~lL-HS~PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1820 TLL-HSQPSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHH-hcChHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 998 55788899999999999988876666666 5888888877766555589999999999887654
No 104
>PTZ00429 beta-adaptin; Provisional
Probab=97.97 E-value=0.0034 Score=63.11 Aligned_cols=249 Identities=16% Similarity=0.103 Sum_probs=158.1
Q ss_pred CCCchhHHHHhhccCCChHHHHHHHHHHH-HHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc
Q 017402 86 NPNPQTLISVLTSKSSPLESKLESLTQLT-KLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD 164 (372)
Q Consensus 86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~ 164 (372)
..+..++-..|.+. +...+.++++.+- .++.+.+ . ..+.+.+++++. +.+.+++....-.|.+.+...
T Consensus 31 kge~~ELr~~L~s~--~~~~kk~alKkvIa~mt~G~D-v------S~LF~dVvk~~~--S~d~elKKLvYLYL~~ya~~~ 99 (746)
T PTZ00429 31 RGEGAELQNDLNGT--DSYRKKAAVKRIIANMTMGRD-V------SYLFVDVVKLAP--STDLELKKLVYLYVLSTARLQ 99 (746)
T ss_pred cchHHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCCC-c------hHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcccC
Confidence 44567788888765 6677788887654 4444322 2 224555667777 788899998888888887643
Q ss_pred cccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 165 DNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 165 ~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
.... --.+..+.+=+.+.++.+|..|++++.++-. .. +.+ -.++.+.+.+.+.++ -+++.|+.++..+
T Consensus 100 pela----lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~-i~e--~l~~~lkk~L~D~~p-YVRKtAalai~Kl 167 (746)
T PTZ00429 100 PEKA----LLAVNTFLQDTTNSSPVVRALAVRTMMCIRV----SS-VLE--YTLEPLRRAVADPDP-YVRKTAAMGLGKL 167 (746)
T ss_pred hHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HH-HHH--HHHHHHHHHhcCCCH-HHHHHHHHHHHHH
Confidence 2211 1235666777777899999999999988742 11 222 366777777877766 9999999999999
Q ss_pred cCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHH
Q 017402 245 TSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTL 320 (372)
Q Consensus 245 ~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L 320 (372)
...+. ..+.+.|.++.|.++|.+. .-+|+.+|..+......+-.+. .+.+..|+..+...++-.+-..+.+|
T Consensus 168 y~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~L~e~~EW~Qi~IL~lL 243 (746)
T PTZ00429 168 FHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYHLPECNEWGQLYILELL 243 (746)
T ss_pred HhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 76433 2344667888999988544 6778888888876433222222 23566677777666666666555555
Q ss_pred HHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 321 SCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 321 ~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
.. ..|....+. ..++..+...+++.|+-|--.|.+++-.+.
T Consensus 244 ~~---y~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 244 AA---QRPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred Hh---cCCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 33 323221111 234555566666666666666666554443
No 105
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=4.1e-06 Score=73.67 Aligned_cols=47 Identities=28% Similarity=0.659 Sum_probs=39.8
Q ss_pred CCccccCCccc-CCCc------------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEI-MSDP------------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~-~~~P------------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
++-.|.||++- |+.| -.++|||.++-.|+..|+.+ ..+||.||.++-
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccc
Confidence 56789999986 5544 67899999999999999986 778999999843
No 106
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=1.8e-05 Score=73.50 Aligned_cols=269 Identities=14% Similarity=0.107 Sum_probs=169.6
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccc--c
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN--K 167 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~--~ 167 (372)
+.|++.|.++ +..+..-+...+.|+.-.-...+..|.+.|+|..|+.++. +.+..+|.+..+.|..+..+.++ +
T Consensus 434 elLi~~Ls~P--eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~--sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 434 ELLIDALSNP--EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM--SKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred HHHHHHhcCc--cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh--cchhhhhhcchhhhhhhhhcCcchhh
Confidence 3456666543 2233444566777777554457999999999999999999 78889999999999999888444 4
Q ss_pred ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc----cchhhhc---cccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402 168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE----VNKATIG---DYPYAINALVSLLQNGKLIREKKEAATA 240 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~----~~~~~i~---~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 240 (372)
-.+...-++..++.+..+++-.++.+...+|.|+..+. +.++... -..-..+.|++.+...++ -.....+-.
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np-~~i~~~~yi 588 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNP-MEILEGCYI 588 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCc-hhhhhhHHH
Confidence 45667788999999999999999999999999997632 2333322 211267778888888777 445556777
Q ss_pred HHhhcCCCchhHHHH-hc-CchHHHHHHHhhh-----------HHH----HHHHHHHHhCCHhHHHHHHhccchHHHHHH
Q 017402 241 LYALTSFPENRKRVV-SC-GAVPILMRLADAG-----------LER----AVEVLSILVKCKEGREEMMRVSGCVGVFVK 303 (372)
Q Consensus 241 L~~L~~~~~~~~~i~-~~-g~v~~L~~ll~~~-----------~e~----a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ 303 (372)
|.+++..+++...++ +. ..+..+-..|... .++ ......++....++-...+-.. |.+=.
T Consensus 589 lv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p~~D~ 665 (743)
T COG5369 589 LVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---PHLDN 665 (743)
T ss_pred HHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---CCccc
Confidence 888887777776665 33 4555555555221 111 1122223333211111111100 11111
Q ss_pred HHhc---CChhHHHhHHHHHHHHhcC---C------HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 304 MLKT---GSSRAVQCSLFTLSCLCCC---S------QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 304 ll~~---~~~~~~~~a~~~L~~l~~~---~------~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
+=+. .+.+......+...++... . .+-++.+.+.|.-+.++.+...++..||+++..+|..++
T Consensus 666 ~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 666 MKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred cccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 1011 1222333444444443321 1 144566788899999999998999999999999998775
No 107
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4.4e-06 Score=71.65 Aligned_cols=46 Identities=24% Similarity=0.404 Sum_probs=41.7
Q ss_pred ccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
-.|+||.+.+.-||.++|+|.||.-||.-....+..+||+||.++.
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence 4699999999999999999999999998866666778999999987
No 108
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.95 E-value=5.4e-06 Score=66.38 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=39.5
Q ss_pred CccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.|.|.||...++.||+..|||.||..|..+-... ...|-+|+....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence 5899999999999999999999999998765554 567999987654
No 109
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=6.7e-06 Score=69.57 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=41.8
Q ss_pred CCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhc-CCCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDS-GHRTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~-~~~~CP~c~~~~~ 54 (372)
-.....||+|.+.-..|.++- |||.||+.|+..-+.. ..++||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345678999999999998865 9999999999887653 3679999998765
No 110
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=5.1e-06 Score=76.13 Aligned_cols=70 Identities=29% Similarity=0.552 Sum_probs=53.9
Q ss_pred CCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCC----CCCccHHHHHHHHHHhcC
Q 017402 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQP----SLIPNHALRSLISNFTRT 75 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~----~~~~n~~l~~~i~~~~~~ 75 (372)
+..+|.|-+|...+.+||+++|||+||..|+.+.... ...||.||..+.... ....|+....++..|+..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 4678999999999999999999999999999996664 667999999887211 112345555677666653
No 111
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.91 E-value=0.0028 Score=59.34 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=32.6
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
.++.|..+++.. .++..++.+|..+-. ...++.|+..+.+.. +++.|..+++.++.
T Consensus 241 a~~~L~~ll~d~--~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 241 AQAWLRELLQAA--ATRREALRAVGLVGD-----------VEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHHhcCh--hhHHHHHHHHHHcCC-----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 455555555442 255555555554322 235677777665433 88888888877764
No 112
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.87 E-value=2.5e-05 Score=71.91 Aligned_cols=178 Identities=20% Similarity=0.259 Sum_probs=96.7
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHhc----CCCCCCCCCCCCCCCCCCCccHHHH-HHHHHHhcCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS----GHRTCPITKLPLPDQPSLIPNHALR-SLISNFTRTPLPKP 80 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~----~~~~CP~c~~~~~~~~~~~~n~~l~-~~i~~~~~~~~~~~ 80 (372)
..+..|.+|.+.-.||+...|.|+||+.|+.+++.. .+-+||.|...++ ..... +.+. .-.+.|+..
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls-iDlse--~alek~~l~~Fk~s----- 605 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS-IDLSE--PALEKTDLKGFKAS----- 605 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc-ccccc--hhhhhcchhhhhhH-----
Confidence 356789999999999999999999999999888752 3468999998887 33221 1121 222223222
Q ss_pred CCCCCCCCchhHHHHhhccCCChHHHHHHHHH-HHHHhhcChHHHHHHhhcCCHHHHHHHH----hhc---------CCC
Q 017402 81 QLEHANPNPQTLISVLTSKSSPLESKLESLTQ-LTKLSKRDSASRRKLTESGAVSAVLNCL----KIH---------SDG 146 (372)
Q Consensus 81 ~~~~~~~~~~~li~~L~~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~i~~~g~i~~L~~lL----~~~---------~~~ 146 (372)
+++..++-+.--...+.+|+.. |..+-..+- ..+.|+=..+. .+++++ ... +-+
T Consensus 606 ----------SIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~-t~KsIVFSQFT-SmLDLi~~rL~kaGfscVkL~GsMs 673 (791)
T KOG1002|consen 606 ----------SILNRINMDDWQSSTKIEALVEELYFLRERDR-TAKSIVFSQFT-SMLDLIEWRLGKAGFSCVKLVGSMS 673 (791)
T ss_pred ----------HHhhhcchhhhcchhHHHHHHHHHHHHHHccc-chhhhhHHHHH-HHHHHHHHHhhccCceEEEeccCCC
Confidence 3455554332123445666643 444444333 33333222211 122222 211 223
Q ss_pred hhHHHHHHHHHhcCCCCcccccccc--ccCChHHHHHHHh-----c--CChHHHHHHHHHHHHhccccc
Q 017402 147 FTLQEKALSLLLNLSLDDDNKVGLV--AEGAVSRVVAALR-----F--GSPDCRAIAATIITSLAVVEV 206 (372)
Q Consensus 147 ~~~~~~a~~~L~~l~~~~~~~~~i~--~~g~i~~lv~~L~-----~--~~~~~~~~a~~~L~~ls~~~~ 206 (372)
+..+..+ |.++..+.+.+.-++ ++||+..=+.--+ + -++.+.-+|..-+..+.....
T Consensus 674 ~~ardat---ik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rP 739 (791)
T KOG1002|consen 674 PAARDAT---IKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRP 739 (791)
T ss_pred hHHHHHH---HHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccc
Confidence 4444444 445555666666555 3666543322211 1 267777777766666654443
No 113
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=7.4e-06 Score=70.13 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=44.9
Q ss_pred CccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHH
Q 017402 8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRS 67 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~ 67 (372)
.|.|-||.+.|.+||+..|||+||..|-...+.. ...|++|.+... ..+.+...+..
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~--g~~~~akeL~~ 297 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH--GSFNVAKELLV 297 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc--cccchHHHHHH
Confidence 4789999999999999999999999998777664 457999988765 44444444443
No 114
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.0032 Score=59.53 Aligned_cols=255 Identities=20% Similarity=0.190 Sum_probs=135.8
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV 171 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 171 (372)
|-.+|++. .+.+..++++.+..++..+ ....+.+. .|..|-.+|+ +.....+-.|+++|..|+.....+..+.
T Consensus 269 L~~wls~k--~emV~lE~Ar~v~~~~~~n--v~~~~~~~-~vs~L~~fL~--s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 269 LNSWLSDK--FEMVFLEAARAVCALSEEN--VGSQFVDQ-TVSSLRTFLK--STRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHhcCc--chhhhHHHHHHHHHHHHhc--cCHHHHHH-HHHHHHHHHh--cchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 33445443 4788899999999988754 13333332 4677777888 7788899999999999998765555444
Q ss_pred ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh
Q 017402 172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR 251 (372)
Q Consensus 172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 251 (372)
+. .+=.++.+.+..+-.+|...|..-.. +++-.. .+..+..++.+-++ ..+.-+..++..||..-+.+
T Consensus 342 N~----evEsLIsd~Nr~IstyAITtLLKTGt-~e~idr------Lv~~I~sfvhD~SD-~FKiI~ida~rsLsl~Fp~k 409 (898)
T COG5240 342 NK----EVESLISDENRTISTYAITTLLKTGT-EETIDR------LVNLIPSFVHDMSD-GFKIIAIDALRSLSLLFPSK 409 (898)
T ss_pred Ch----hHHHHhhcccccchHHHHHHHHHcCc-hhhHHH------HHHHHHHHHHhhcc-CceEEeHHHHHHHHhhCcHH
Confidence 32 23333444455554444444443321 111111 12222222222222 23333333333333321111
Q ss_pred ---------HHHHhcCc-------hHHHHHHHhh---hHHHHHHHHHHHhCCHhHHHHHHh------ccc--------hH
Q 017402 252 ---------KRVVSCGA-------VPILMRLADA---GLERAVEVLSILVKCKEGREEMMR------VSG--------CV 298 (372)
Q Consensus 252 ---------~~i~~~g~-------v~~L~~ll~~---~~e~a~~~L~~L~~~~~~~~~i~~------~~g--------~i 298 (372)
..+.+.|+ |+.+.+++.. .+|.|+..|+..-.+-+..+..+. .+| .+
T Consensus 410 ~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yv 489 (898)
T COG5240 410 KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYV 489 (898)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHH
Confidence 11123343 3444444422 266666555555443332222111 111 23
Q ss_pred HHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 299 GVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 299 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
..+..-+--.+.-++..|+.+|..++..-. .......+...|-+.+.+.++++|..|..+|+.++..
T Consensus 490 rhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 490 RHIYNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 333333323456778888888877765421 1222334566777888899999999999999998854
No 115
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.1e-05 Score=78.77 Aligned_cols=46 Identities=33% Similarity=0.685 Sum_probs=41.4
Q ss_pred CccccCCcccCCC-----ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSD-----PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~-----Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+-.|+||.+.|.. |..++|||.||..|+..|+.. ..+||.||..+.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 6789999999998 788999999999999999987 778999998554
No 116
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.001 Score=63.67 Aligned_cols=271 Identities=13% Similarity=0.076 Sum_probs=164.6
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc-CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK 167 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~ 167 (372)
.|.+++..++. ++..|..|+..+..+..... ...+... .+++.+..+-. +.++++|...+.+|..|..-...+
T Consensus 176 ipkfl~f~~h~--spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalan--D~~~eVRk~vC~alv~Llevr~dk 249 (885)
T KOG2023|consen 176 IPKFLQFFKHP--SPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALAN--DEDPEVRKNVCRALVFLLEVRPDK 249 (885)
T ss_pred HHHHHHHHhCC--ChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHhcHHh
Confidence 37888888876 89999999998887765322 2222221 34555655555 789999999999998876543333
Q ss_pred ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhcc-ccchHHHHHHHhhcCCchHHH-H----------
Q 017402 168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGD-YPYAINALVSLLQNGKLIREK-K---------- 235 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~-~---------- 235 (372)
..=.-.++++-++....+.|.++...|+.....++..+-.+..+.. ....||.|++-+.-.+...+. +
T Consensus 250 l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpD 329 (885)
T KOG2023|consen 250 LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPD 329 (885)
T ss_pred cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCc
Confidence 2111256777777777778899999999999999987755555432 125677766433211100000 0
Q ss_pred --------------HHH-------------------HHHHhhcCCCc----hhHHHHhcCchHHHHHHHhhh--------
Q 017402 236 --------------EAA-------------------TALYALTSFPE----NRKRVVSCGAVPILMRLADAG-------- 270 (372)
Q Consensus 236 --------------~a~-------------------~aL~~L~~~~~----~~~~i~~~g~v~~L~~ll~~~-------- 270 (372)
... ..=|||=.... ....+.....++.++.+|+..
T Consensus 330 reeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~v 409 (885)
T KOG2023|consen 330 REEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKV 409 (885)
T ss_pred hhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhh
Confidence 000 00122211111 112223444666666666332
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHhc-cchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhh
Q 017402 271 LERAVEVLSILVKCKEGREEMMRV-SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLE 348 (372)
Q Consensus 271 ~e~a~~~L~~L~~~~~~~~~i~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~ 348 (372)
+|..+-+|+.++.+ +.+-+..+ ...++-|+++|.+..+.+|.-++++|...+..-- +-+.+...- ++.-|+.-+-
T Consensus 410 rEagvLAlGAIAEG--cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p-vL~~ll~~ll 486 (885)
T KOG2023|consen 410 REAGVLALGAIAEG--CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP-VLEGLLRRLL 486 (885)
T ss_pred hhhhHHHHHHHHHH--HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH-HHHHHHHHHh
Confidence 66777777777652 22333332 2368888999999999999999988877665310 112222111 3444555555
Q ss_pred cccHHHHHHHHHHHHHHhcC
Q 017402 349 DDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 349 ~~~~~v~~~a~~~L~~l~~~ 368 (372)
+++.+|+++|+.+...|-+.
T Consensus 487 D~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 487 DSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 78999999999999887654
No 117
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.73 E-value=0.0018 Score=61.65 Aligned_cols=257 Identities=15% Similarity=0.132 Sum_probs=167.5
Q ss_pred HHHHHHHhhcChHHHHHHhhcCCHHHHHHHH--------hhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHH
Q 017402 110 LTQLTKLSKRDSASRRKLTESGAVSAVLNCL--------KIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVV 180 (372)
Q Consensus 110 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--------~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv 180 (372)
+..|+-+++ ++.+...+....++..|.++- .....+.++...|+++|.|+... +..|..+.+.|+.+.++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 456666666 455777777766677776665 11145788999999999997666 77788888999999999
Q ss_pred HHHhcC-----ChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhc---------C-------CchHHHHHHH
Q 017402 181 AALRFG-----SPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQN---------G-------KLIREKKEAA 238 (372)
Q Consensus 181 ~~L~~~-----~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~---------~-------~~~~~~~~a~ 238 (372)
..|+.. +.++.-...++|+-++... +.+..+....+++..++..+.. . .+.....+++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 7888899999998887544 5666665545778877776531 0 1235677889
Q ss_pred HHHHhhcCCCchhHHHHhcCchHHHHHHHhh----h---------HHHHHHHHHHHhCCHhHH--------HHH---Hhc
Q 017402 239 TALYALTSFPENRKRVVSCGAVPILMRLADA----G---------LERAVEVLSILVKCKEGR--------EEM---MRV 294 (372)
Q Consensus 239 ~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~----~---------~e~a~~~L~~L~~~~~~~--------~~i---~~~ 294 (372)
+++.|+.........-...+.++.++.++.. . .-+++.+|.|+-...... ..+ ...
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 9999997644322221233455555555410 1 445777777773211110 000 011
Q ss_pred cchHHHHHHHHhc----CC--h--hHHHhHHHHHHHHhcCCHHHHHHHHh----------------cChhHHHHHHhhcc
Q 017402 295 SGCVGVFVKMLKT----GS--S--RAVQCSLFTLSCLCCCSQEICGDSRK----------------EGVLDICMGLLEDD 350 (372)
Q Consensus 295 ~g~i~~L~~ll~~----~~--~--~~~~~a~~~L~~l~~~~~~~~~~~~~----------------~g~~~~l~~ll~~~ 350 (372)
...+..|+.+|.. .. . ..-.--+.+|..++..+...|+.+.. ...--.|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2356677777643 11 1 22334556777777776666666654 23778899999987
Q ss_pred cHHHHHHHHHHHHHHhc
Q 017402 351 NEKVRRNANNLIQTLSG 367 (372)
Q Consensus 351 ~~~v~~~a~~~L~~l~~ 367 (372)
.+.+|..++.+|-.|.+
T Consensus 321 ~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCK 337 (446)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 79999999999977754
No 118
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.014 Score=51.60 Aligned_cols=244 Identities=16% Similarity=0.173 Sum_probs=165.7
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHH
Q 017402 103 LESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAA 182 (372)
Q Consensus 103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~ 182 (372)
.-.|.+.+..+..+..-+++.....-+.|.+..|..=|+. ..+.-++..++.....|+..+-.++-+.+.|.|+.+..+
T Consensus 185 diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkG-teDtLVianciElvteLaeteHgreflaQeglIdlicnI 263 (524)
T KOG4413|consen 185 DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKG-TEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNI 263 (524)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcC-CcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHH
Confidence 3467777888888888888888888889999988888872 256678888999999999888889988999999999999
Q ss_pred HhcC--ChHHHHHHHHHHHH----hcccccchhhhcc-ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH
Q 017402 183 LRFG--SPDCRAIAATIITS----LAVVEVNKATIGD-YPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV 255 (372)
Q Consensus 183 L~~~--~~~~~~~a~~~L~~----ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 255 (372)
+... ++-.+..+...... .+..+-.-+.+.+ ..-+|+.-.+++...++ ...+.|.-++..|-++.++.+.+.
T Consensus 264 IsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDp-daieaAiDalGilGSnteGadlll 342 (524)
T KOG4413|consen 264 ISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDP-DAIEAAIDALGILGSNTEGADLLL 342 (524)
T ss_pred hhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCc-hHHHHHHHHHHhccCCcchhHHHh
Confidence 9653 34444433333332 2222212222222 11245555666666666 899999999999999999999888
Q ss_pred hcCc--hHHHHH-HHhhh----HHHHHHHHHHHhCC---H-----hHHH------HHHhc------cchHHHHHHHHhcC
Q 017402 256 SCGA--VPILMR-LADAG----LERAVEVLSILVKC---K-----EGRE------EMMRV------SGCVGVFVKMLKTG 308 (372)
Q Consensus 256 ~~g~--v~~L~~-ll~~~----~e~a~~~L~~L~~~---~-----~~~~------~i~~~------~g~i~~L~~ll~~~ 308 (372)
+.|- ...++. ..+.. ++.++.+|.+++.. + +|+. .+... -.-...+..+++..
T Consensus 343 kTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp 422 (524)
T KOG4413|consen 343 KTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP 422 (524)
T ss_pred ccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC
Confidence 8764 233332 22221 67788888888762 1 1111 11110 01245566777778
Q ss_pred ChhHHHhHHHHHHHHhcCCHHHHHHHH-hcChhHHHHHHhhc
Q 017402 309 SSRAVQCSLFTLSCLCCCSQEICGDSR-KEGVLDICMGLLED 349 (372)
Q Consensus 309 ~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~~~~l~~ll~~ 349 (372)
.+.++-.|.+.+..++.. |....+|. +.|.++..++....
T Consensus 423 fpEihcAalktfTAiaaq-PWalkeifakeefieiVtDastE 463 (524)
T KOG4413|consen 423 FPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDASTE 463 (524)
T ss_pred ChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeecccchh
Confidence 899999999999999987 87776664 46777766655443
No 119
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.56 E-value=0.00039 Score=60.14 Aligned_cols=200 Identities=16% Similarity=0.143 Sum_probs=112.5
Q ss_pred HHHHh--hccCCChHHHHHHHHHHHHHhhcC--hHHHHHHhhc--CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402 92 LISVL--TSKSSPLESKLESLTQLTKLSKRD--SASRRKLTES--GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165 (372)
Q Consensus 92 li~~L--~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~--g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 165 (372)
+...| ...+.+.+.|.+|+..|+.+..++ ......+.+. ..+..+...+. +....+...|+.++..++..-.
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~--d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS--DLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S---HH---HHHHHHHHHHHHHHHHG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHh
Confidence 34444 344468899999999999999876 3344444332 45556666666 5567788999999998876633
Q ss_pred ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccch-HHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYA-INALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~-i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
..-.-.-...++.|++.+.++..-++..|..+|..+...-. . . ..+ ++.+...+.+.+. .++..++..|..+
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----~-~-~~~~~~~l~~~~~~Kn~-~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----Y-S-PKILLEILSQGLKSKNP-QVREECAEWLAII 158 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H----HHHHHHHHHHTT-S-H-HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----c-H-HHHHHHHHHHHHhCCCH-HHHHHHHHHHHHH
Confidence 22211235678888888888888899999999998875322 1 1 234 5566666666666 8888888888776
Q ss_pred cCCCc-hhHHHHhcCchHHHHHHHhhhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402 245 TSFPE-NRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323 (372)
Q Consensus 245 ~~~~~-~~~~i~~~g~v~~L~~ll~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 323 (372)
...-. ....+-..+ .. ...++.+...+.+.++.+|+.|-.+++.+
T Consensus 159 l~~~~~~~~~l~~~~--------------------------------~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSA--------------------------------FL--KQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HTT-----GGG--HH--------------------------------HH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHccchHhhhcccc--------------------------------hH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 54222 111111000 01 23566677777777888888888888887
Q ss_pred hcCCHHHHHHH
Q 017402 324 CCCSQEICGDS 334 (372)
Q Consensus 324 ~~~~~~~~~~~ 334 (372)
....++....+
T Consensus 205 ~~~~~~~a~~~ 215 (228)
T PF12348_consen 205 YSHFPERAESI 215 (228)
T ss_dssp HHHH-HHH---
T ss_pred HHHCCHhhccc
Confidence 66544444433
No 120
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=2.2e-05 Score=48.78 Aligned_cols=46 Identities=30% Similarity=0.478 Sum_probs=39.1
Q ss_pred ccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..|.||.+--.|.|...|||. .|..|-.+.|......||.||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 579999998888889999995 6999987877767889999998765
No 121
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.52 E-value=0.00019 Score=43.42 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 017402 122 ASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL 162 (372)
Q Consensus 122 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~ 162 (372)
+++..+++.|+++.|+++|. +.+.+++..++++|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHcC
Confidence 48889999999999999999 7899999999999999863
No 122
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.51 E-value=0.00082 Score=48.42 Aligned_cols=81 Identities=35% Similarity=0.451 Sum_probs=62.5
Q ss_pred hHHHHHHH-hcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHH
Q 017402 176 VSRVVAAL-RFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRV 254 (372)
Q Consensus 176 i~~lv~~L-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i 254 (372)
|+.|++.| +++++.+|..++.+|..+ .. ..+++.|+.++++++. .++..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~-~~~~~~L~~~l~d~~~-~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GD-PEAIPALIELLKDEDP-MVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------TH-HHHHHHHHHHHTSSSH-HHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CC-HhHHHHHHHHHcCCCH-HHHHHHHHHHHHhC---------
Confidence 67899999 778999999999999843 22 3689999999987766 99999999999872
Q ss_pred HhcCchHHHHHHHhhh-----HHHHHHHH
Q 017402 255 VSCGAVPILMRLADAG-----LERAVEVL 278 (372)
Q Consensus 255 ~~~g~v~~L~~ll~~~-----~e~a~~~L 278 (372)
...+++.|.+++.++ +..|+.+|
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 234888999988543 34455554
No 123
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=97.51 E-value=0.0016 Score=54.24 Aligned_cols=116 Identities=16% Similarity=0.051 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHhc--C--------------chHHHHHHHhhh----------HHHHHHHHHHHhCCH
Q 017402 232 REKKEAATALYALTSFPENRKRVVSC--G--------------AVPILMRLADAG----------LERAVEVLSILVKCK 285 (372)
Q Consensus 232 ~~~~~a~~aL~~L~~~~~~~~~i~~~--g--------------~v~~L~~ll~~~----------~e~a~~~L~~L~~~~ 285 (372)
.....++..|+||+..++++..+.+. . .+..|++.+..+ -+....++.|++..+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 57788999999999999888866633 2 466777777331 567999999999999
Q ss_pred hHHHHHHhcc-ch--HHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHh---cChhHHHHHHhh
Q 017402 286 EGREEMMRVS-GC--VGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRK---EGVLDICMGLLE 348 (372)
Q Consensus 286 ~~~~~i~~~~-g~--i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~g~~~~l~~ll~ 348 (372)
++|+.+.... +. +..|+..+.+.|..-|.-++++|.|+|.. .+.-..+.. .++++.|+.-+-
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd-~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD-TDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc-HhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999999843 33 56777777777777778999999998866 555566655 356666666554
No 124
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.004 Score=60.64 Aligned_cols=269 Identities=12% Similarity=0.069 Sum_probs=170.5
Q ss_pred hhHHHHhhccCCCh---HHHHHHHHHHHHHhhcChHHHHHHhhc-CCHHHHHHHHhhcCCChhHHHHHHHHHhcC-CCCc
Q 017402 90 QTLISVLTSKSSPL---ESKLESLTQLTKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDGFTLQEKALSLLLNL-SLDD 164 (372)
Q Consensus 90 ~~li~~L~~~~~~~---~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l-~~~~ 164 (372)
|+++..|.+...++ .+|..++.+|+.+|.+-. -....... .++-.++.-.++...+..++-.|+.+|.|- -...
T Consensus 128 p~li~~lv~nv~~~~~~~~k~~slealGyice~i~-pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 128 PELIVTLVSNVGEEQASMVKESSLEALGYICEDID-PEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCC-HHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence 77888877654332 477899999999997522 22333332 455666666655456788999999999883 2211
Q ss_pred cccc-cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402 165 DNKV-GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALY 242 (372)
Q Consensus 165 ~~~~-~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 242 (372)
.|-. ..-..=.++.+++.-.+++.+++..|..-|..+.... +.-..... ...+..-+..++++++ ++...+...=+
T Consensus 207 ~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~-~alfaitl~amks~~d-eValQaiEFWs 284 (859)
T KOG1241|consen 207 ANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYME-QALFAITLAAMKSDND-EVALQAIEFWS 284 (859)
T ss_pred HhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcH-HHHHHHHHHHH
Confidence 1111 1111223445566667788999999888888876544 33333333 3456666777888888 88888888777
Q ss_pred hhcCCC-c---hhHHHHh---------------cCchHHHHHHHhhh--------------HHHHHHHHHHHhCCHhHHH
Q 017402 243 ALTSFP-E---NRKRVVS---------------CGAVPILMRLADAG--------------LERAVEVLSILVKCKEGRE 289 (372)
Q Consensus 243 ~L~~~~-~---~~~~i~~---------------~g~v~~L~~ll~~~--------------~e~a~~~L~~L~~~~~~~~ 289 (372)
++|..+ + .-...++ .+++|.|+++|... .-.|+.+.+..+++
T Consensus 285 ticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D----- 359 (859)
T KOG1241|consen 285 TICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD----- 359 (859)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc-----
Confidence 666421 1 0011111 15678888888221 12345555555553
Q ss_pred HHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 290 EMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 290 ~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
.|+.+ +++-+-+-+++.+=+-++.|+.++..+-.+....+..-+..++++.++.+..+.+--+|..++|.|-.+.++
T Consensus 360 ~Iv~~--Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 360 DIVPH--VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred cchhh--hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 23331 344444455667778889999999998877445555556677899999999988999999999998665543
No 125
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.49 E-value=0.034 Score=52.23 Aligned_cols=176 Identities=18% Similarity=0.042 Sum_probs=99.1
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc
Q 017402 133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG 212 (372)
Q Consensus 133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 212 (372)
+..|+..|. +.++.++..++.+|..+ ...+..+.|+.+|++.++.++..++.++.. .
T Consensus 88 ~~~L~~~L~--d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r 144 (410)
T TIGR02270 88 LRSVLAVLQ--AGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGA-----------H 144 (410)
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHh-----------h
Confidence 677777777 66666777777777643 234456677777777777777766655555 1
Q ss_pred cccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHH
Q 017402 213 DYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGR 288 (372)
Q Consensus 213 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~ 288 (372)
. ....+.|..+|++.+. .++..|+.+|..+-.. ..++.|...+.+. +..++..+..+-.
T Consensus 145 ~-~~~~~~L~~~L~d~d~-~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~----- 207 (410)
T TIGR02270 145 R-HDPGPALEAALTHEDA-LVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS----- 207 (410)
T ss_pred c-cChHHHHHHHhcCCCH-HHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-----
Confidence 1 2345677777776655 7777787777766532 2444455555332 3444444433322
Q ss_pred HHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 289 EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 289 ~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
..++..+..+...........+..++.. ... + ..++.|..++++.. ++..+..+|-.+..
T Consensus 208 ------~~A~~~l~~~~~~~g~~~~~~l~~~lal-~~~-~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 208 ------RLAWGVCRRFQVLEGGPHRQRLLVLLAV-AGG-P---------DAQAWLRELLQAAA--TRREALRAVGLVGD 267 (410)
T ss_pred ------HhHHHHHHHHHhccCccHHHHHHHHHHh-CCc-h---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence 2334444442222222222222222222 211 1 46777778887644 78888887766543
No 126
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.48 E-value=5e-05 Score=68.31 Aligned_cols=36 Identities=25% Similarity=0.577 Sum_probs=32.5
Q ss_pred CCCCccccCCcccCCCceecCCchHhhHHHHHHHHh
Q 017402 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD 40 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~ 40 (372)
+++++.||+|..+|++|++++|||+.|+.|-.....
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 468999999999999999999999999999876554
No 127
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.01 Score=56.68 Aligned_cols=227 Identities=13% Similarity=0.096 Sum_probs=140.8
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA 181 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~ 181 (372)
.+.+|..|..+...+...-+.+.. .-.++.++.-+. +..=..+..++..|..++...+.+....-..++|.+.+
T Consensus 229 ~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~--~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 229 INKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLL--EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSE 302 (569)
T ss_pred chhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHH--HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHH
Confidence 566776666655554432221111 112333333333 12224567888888888877777777777899999999
Q ss_pred HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchH
Q 017402 182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVP 261 (372)
Q Consensus 182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~ 261 (372)
.|-+..++++.++..+|..+...-+|.+ | .-.+|.|+..+.++.- -...+...|..=..-. .+++-.+.
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~d-I---~~~ip~Lld~l~dp~~--~~~e~~~~L~~ttFV~-----~V~~psLa 371 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPD-I---QKIIPTLLDALADPSC--YTPECLDSLGATTFVA-----EVDAPSLA 371 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHH-H---HHHHHHHHHHhcCccc--chHHHHHhhcceeeee-----eecchhHH
Confidence 9999999999999999999998877777 2 3579999999988752 2334444443222111 12233455
Q ss_pred HHHHHHhhh--------HHHHHHHHHHHhCCHhHHHHHHhc-cchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHH
Q 017402 262 ILMRLADAG--------LERAVEVLSILVKCKEGREEMMRV-SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICG 332 (372)
Q Consensus 262 ~L~~ll~~~--------~e~a~~~L~~L~~~~~~~~~i~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 332 (372)
.++.+|..+ ...++.+..|+|.--+....+..- ...+|.|-+.+....|.+|.-+.++|..+-.. .....
T Consensus 372 lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~-~g~~~ 450 (569)
T KOG1242|consen 372 LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER-LGEVS 450 (569)
T ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH-HHhhc
Confidence 556666333 556888999999865444444331 23566666666666789999999999766543 11111
Q ss_pred HHHhcChhHHHHHHhhc
Q 017402 333 DSRKEGVLDICMGLLED 349 (372)
Q Consensus 333 ~~~~~g~~~~l~~ll~~ 349 (372)
. .+.++.+.+.+.+
T Consensus 451 f---~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 451 F---DDLIPELSETLTS 464 (569)
T ss_pred c---cccccHHHHhhcc
Confidence 1 4455555555544
No 128
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.47 E-value=0.00089 Score=57.91 Aligned_cols=176 Identities=15% Similarity=0.075 Sum_probs=103.6
Q ss_pred cCChHHHHHHHHHHHHhcccc---cchhhhcc-ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCch
Q 017402 185 FGSPDCRAIAATIITSLAVVE---VNKATIGD-YPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAV 260 (372)
Q Consensus 185 ~~~~~~~~~a~~~L~~ls~~~---~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v 260 (372)
+.+=+.+..+..-|..+.... .....+.. ....+..+...+.+... .+...|+.++..++..-...-.-.-...+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs-~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS-KVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 346667777888888776655 22222221 12344567777777777 89999999999998643322211122467
Q ss_pred HHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccch-HHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHH
Q 017402 261 PILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGC-VGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSR 335 (372)
Q Consensus 261 ~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~-i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 335 (372)
|.|++.+.++ .+.+..+|..++..-..- ... ++.+...+.+.++.++..++..|..+....+.....+.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 8888888554 677778888887753311 112 44555566778999999999988887665442222222
Q ss_pred h----cChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 336 K----EGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 336 ~----~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
. ..+++.+...+.+.+++||+.|..++..|..
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 2 3478889999999999999999999987753
No 129
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00011 Score=61.70 Aligned_cols=73 Identities=40% Similarity=0.619 Sum_probs=66.9
Q ss_pred CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCCC
Q 017402 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPL 77 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 77 (372)
.+++.++|.|..++|++||+.+.|-+|.+.-|.+.+..-+..-|+++.+++ ...+.||..++..|+.|.+.+.
T Consensus 207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lt-e~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLT-EYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCC-HHhhccchHHHHHHHHHHHhcc
Confidence 478889999999999999999999999999999999876777999999999 8899999999999999988753
No 130
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.013 Score=55.28 Aligned_cols=235 Identities=14% Similarity=0.156 Sum_probs=146.2
Q ss_pred CCCchhHHHHhhcc--CCChHHHHHHHHHHHHHhhcChHHHHHHhh-cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 017402 86 NPNPQTLISVLTSK--SSPLESKLESLTQLTKLSKRDSASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL 162 (372)
Q Consensus 86 ~~~~~~li~~L~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~ 162 (372)
+...++++.+|... ..++..|.--+.=|.-+-. .| ..+.+.= ....+-|+.+|. +.+++++..+=.+|.++-.
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P-~~~m~~yl~~~ldGLf~~Ls--D~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VP-DLEMISYLPSLLDGLFNMLS--DSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CC-cHHHHhcchHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHH
Confidence 44456777777653 2356677655555554443 33 2333322 245666778888 7888888777666655433
Q ss_pred Cccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHH---
Q 017402 163 DDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAA--- 238 (372)
Q Consensus 163 ~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~--- 238 (372)
.-.+....++ ...++.++..+.++++.++..|..-+..+-... .+..+....|++..+++++.+..+...+..+.
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~-g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP-GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC-CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 3222222223 567888999999999999998876666665443 33334343688899999988766522333222
Q ss_pred HHHHhhcCCCchhHHHHhcC-chHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHH
Q 017402 239 TALYALTSFPENRKRVVSCG-AVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAV 313 (372)
Q Consensus 239 ~aL~~L~~~~~~~~~i~~~g-~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~ 313 (372)
..|..+.+....... ++-| .+..|.+.+.++ +-.++.-+..|-....++-.... ......|+.-+.+.+..+-
T Consensus 317 ~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~-~~if~tLL~tLsd~sd~vv 394 (675)
T KOG0212|consen 317 GLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN-DSIFLTLLKTLSDRSDEVV 394 (675)
T ss_pred HHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc-cHHHHHHHHhhcCchhHHH
Confidence 234555555444433 3333 567777777555 23355555555544444443333 6788999999999999999
Q ss_pred HhHHHHHHHHhcCC
Q 017402 314 QCSLFTLSCLCCCS 327 (372)
Q Consensus 314 ~~a~~~L~~l~~~~ 327 (372)
..++..+.++|...
T Consensus 395 l~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 395 LLALSLLASICSSS 408 (675)
T ss_pred HHHHHHHHHHhcCc
Confidence 99999999999863
No 131
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.013 Score=53.77 Aligned_cols=210 Identities=15% Similarity=0.126 Sum_probs=145.0
Q ss_pred HHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc---cc-------hhhhccccchHHH
Q 017402 151 EKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE---VN-------KATIGDYPYAINA 220 (372)
Q Consensus 151 ~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~---~~-------~~~i~~~~g~i~~ 220 (372)
...+.-++.++.-++....+++.++++.++.+|.+.+.++.......|..|...+ ++ -+.++. .++++.
T Consensus 102 hd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaL 180 (536)
T KOG2734|consen 102 HDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLAL 180 (536)
T ss_pred HHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHH
Confidence 4455667778888998888999999999999999999999999999999987543 11 123344 578888
Q ss_pred HHHHhhcCCc-----hHHHHHHHHHHHhhcC-CCchhHHHHhcCchHHHHHHHh-hh-----HHHHHHHHHHHhCCHh-H
Q 017402 221 LVSLLQNGKL-----IREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLAD-AG-----LERAVEVLSILVKCKE-G 287 (372)
Q Consensus 221 Lv~ll~~~~~-----~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~-~~-----~e~a~~~L~~L~~~~~-~ 287 (372)
|+.-+..-++ .....+++..+-|+.. .++....+++.|.+.+|++-+. .. ...|..+|+-+-.+.. +
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 8877754322 2455567778889887 5578888999999999998662 21 5568888888877655 4
Q ss_pred HHHHHhccchHHHHHHHHh---cCC---hhHHH---hHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHH
Q 017402 288 REEMMRVSGCVGVFVKMLK---TGS---SRAVQ---CSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNA 358 (372)
Q Consensus 288 ~~~i~~~~g~i~~L~~ll~---~~~---~~~~~---~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a 358 (372)
+..... -.|+..+++-+. ..+ ..-.+ +-...|..+-. .++++..+....+++.+.-+++. ....|-.|
T Consensus 261 ~~~~~~-l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sa 337 (536)
T KOG2734|consen 261 RKLLGP-LDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE-KKVSRGSA 337 (536)
T ss_pred hhhhcC-cccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH-HHHhhhhH
Confidence 444444 557777766552 222 22233 44444444333 48999999887777776666665 44556666
Q ss_pred HHHHHH
Q 017402 359 NNLIQT 364 (372)
Q Consensus 359 ~~~L~~ 364 (372)
.+.|.-
T Consensus 338 lkvLd~ 343 (536)
T KOG2734|consen 338 LKVLDH 343 (536)
T ss_pred HHHHHH
Confidence 666643
No 132
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.41 E-value=0.0004 Score=41.95 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=35.8
Q ss_pred HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 328 QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 328 ~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
++.+..+++.|+++.|+.+++++++++++.|.++|+++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457788999999999999999999999999999999985
No 133
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.38 E-value=5.8e-05 Score=68.43 Aligned_cols=46 Identities=26% Similarity=0.647 Sum_probs=37.7
Q ss_pred CCCccccCCcccCCCce----ecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPV----ILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv----~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.+--+||+|++.|.+-+ ++.|.|+|.-.|+..|+.. +||+||--.+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 34558999999998776 5679999999999999954 7999986443
No 134
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.0014 Score=61.27 Aligned_cols=196 Identities=9% Similarity=0.114 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHh
Q 017402 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALR 184 (372)
Q Consensus 106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~ 184 (372)
-..++..|..+++.-.-.|..+.+..+++.|+++|. ..+..+.--+...+.|+... +..+..+...|.|..++.++.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls--~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALS--NPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhc--CccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence 334556667777654556788888999999999998 55555667777888887666 667888889999999999999
Q ss_pred cCChHHHHHHHHHHHHhcccccchh--hhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC----chhHHHHhcC
Q 017402 185 FGSPDCRAIAATIITSLAVVEVNKA--TIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP----ENRKRVVSCG 258 (372)
Q Consensus 185 ~~~~~~~~~a~~~L~~ls~~~~~~~--~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~----~~~~~i~~~g 258 (372)
+.|...+.+..|++.++-.+..+.+ .... .-++..++.+..++.- .++...+..|+|+..+. +.+..+++..
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDpc~-~vq~q~lQilrNftc~~~knEkskdv~~K~~ 561 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDPCF-KVQHQVLQILRNFTCDTSKNEKSKDVFIKAT 561 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCccc-ccHHHHHHHHHhcccccccccccceeEEecC
Confidence 8888999999999999987764442 3333 3578999999998888 89999999999987632 2344444432
Q ss_pred c----hHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHH
Q 017402 259 A----VPILMRLADAG----LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKML 305 (372)
Q Consensus 259 ~----v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll 305 (372)
- ...|++.+... .+..+.+|.+++.+++..+.++. .+..+..+-++|
T Consensus 562 p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 562 PRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred hHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 2 23344444332 55668888888887776665544 344555554444
No 135
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.31 E-value=0.024 Score=52.09 Aligned_cols=190 Identities=22% Similarity=0.225 Sum_probs=125.2
Q ss_pred CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhh
Q 017402 131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKAT 210 (372)
Q Consensus 131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~ 210 (372)
..++.+...+. +.+..++..++..+..+. ..-.++.+..++.+.+..+|..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~--~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------- 102 (335)
T COG1413 43 EAADELLKLLE--DEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELG-------- 102 (335)
T ss_pred hhHHHHHHHHc--CCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence 46788888888 667888888888844442 2446788999999999999998888666652
Q ss_pred hccccchHHHHHHHhhc-CCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhhHHH-HHHHHHHHhCCHhHH
Q 017402 211 IGDYPYAINALVSLLQN-GKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLER-AVEVLSILVKCKEGR 288 (372)
Q Consensus 211 i~~~~g~i~~Lv~ll~~-~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~-a~~~L~~L~~~~~~~ 288 (372)
. ...++.|++++.. .+. .++..+..+|..+-... ++.+++..+++.... +.... ......-|
T Consensus 103 --~-~~a~~~li~~l~~d~~~-~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~--~~~~~~~r 166 (335)
T COG1413 103 --D-PEAVPPLVELLENDENE-GVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAAL--DAALLDVR 166 (335)
T ss_pred --C-hhHHHHHHHHHHcCCcH-hHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhc--cchHHHHH
Confidence 2 4678899998885 555 89999999988776432 366777777543111 11111 00000111
Q ss_pred HHH------HhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHH
Q 017402 289 EEM------MRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI 362 (372)
Q Consensus 289 ~~i------~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L 362 (372)
... ..+...++.+...+......++..|..+|..+...+ ..+.+.+...+.+.+..+|..+...|
T Consensus 167 ~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 167 AAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred HHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 111 112457888888888888888888888888877663 33456666666666777776666665
Q ss_pred HHH
Q 017402 363 QTL 365 (372)
Q Consensus 363 ~~l 365 (372)
..+
T Consensus 238 ~~~ 240 (335)
T COG1413 238 GEI 240 (335)
T ss_pred ccc
Confidence 443
No 136
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=5.7e-05 Score=63.74 Aligned_cols=55 Identities=25% Similarity=0.454 Sum_probs=41.8
Q ss_pred CCccccCCcccCCCc----------eecCCchHhhHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCcc
Q 017402 7 DDFKCPISLEIMSDP----------VILSSGHTFDRASIQRWLDSG-HRTCPITKLPLPDQPSLIPN 62 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P----------v~~~cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~~~~~~~~n 62 (372)
++-.|.+|.+-+... .+++|+|.|+..||.-|..-| ..+||.|++.+. ...+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd-l~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD-LKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh-HhhhccC
Confidence 456799999866544 378999999999999999654 569999998776 4443333
No 137
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.28 E-value=0.00043 Score=50.81 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccccc
Q 017402 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLV 171 (372)
Q Consensus 106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~ 171 (372)
|...++.|.+++..++.++..+++.||++.++..-.-++.+|-+++-|+.+|.||+.+ ++|++.|.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5678899999999999999999999999999988764467899999999999999877 77777544
No 138
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0014 Score=62.68 Aligned_cols=242 Identities=18% Similarity=0.177 Sum_probs=150.1
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC------ccccccccccCC
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD------DDNKVGLVAEGA 175 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~------~~~~~~i~~~g~ 175 (372)
+..+|..|++.|..|..+.. .-+ -.....++.++ +.+..++..|+..+.-...- .++-+.=....+
T Consensus 211 D~~Vrt~A~eglL~L~eg~k-L~~-----~~Y~~A~~~ls--D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 211 DFRVRTHAVEGLLALSEGFK-LSK-----ACYSRAVKHLS--DDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred CcchHHHHHHHHHhhccccc-ccH-----HHHHHHHHHhc--chHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 66677777777777665332 111 13556778888 78888998887766443211 111111112457
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh--cC-------
Q 017402 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL--TS------- 246 (372)
Q Consensus 176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L--~~------- 246 (372)
+..+...+++.+-.+|-.|+.+|+.+-... .+.|.+ ..=+.++.-++.... ..+..-....+. ++
T Consensus 283 F~~vC~~v~D~sl~VRV~AaK~lG~~~~vS--ee~i~Q--TLdKKlms~lRRkr~--ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRVEAAKALGEFEQVS--EEIIQQ--TLDKKLMSRLRRKRT--AHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred HHHHHHHHhcCceeeeehHHHHhchHHHhH--HHHHHH--HHHHHHhhhhhhhhh--cccchHHHHhcCCcccCcccccc
Confidence 788888888889999999999988875322 112211 122233332222211 111111112222 00
Q ss_pred -----CCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHH
Q 017402 247 -----FPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSL 317 (372)
Q Consensus 247 -----~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~ 317 (372)
.++.-..++..|+-..++.=|.+. ++.|+..+..|+.. +..+.. .++.-|+.++.+.-..++..|.
T Consensus 357 vpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s---sP~FA~--~aldfLvDMfNDE~~~VRL~ai 431 (823)
T KOG2259|consen 357 VPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS---SPGFAV--RALDFLVDMFNDEIEVVRLKAI 431 (823)
T ss_pred CchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC---CCCcHH--HHHHHHHHHhccHHHHHHHHHH
Confidence 222344677888888888877655 56677777777653 333333 3688999999888889999999
Q ss_pred HHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 318 FTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 318 ~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
.+|..|+.+ ..+++.-++.++..+.+.+.++|++...+|++.+-.
T Consensus 432 ~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~ 476 (823)
T KOG2259|consen 432 FALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNARVS 476 (823)
T ss_pred HHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 999999876 234444678888888888999999988888876543
No 139
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.26 E-value=0.0036 Score=49.87 Aligned_cols=123 Identities=9% Similarity=0.106 Sum_probs=97.4
Q ss_pred HHHHHhhcCCHHHHHHHHhhcCC----ChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcC--ChHHHHHHHH
Q 017402 123 SRRKLTESGAVSAVLNCLKIHSD----GFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFG--SPDCRAIAAT 196 (372)
Q Consensus 123 ~~~~i~~~g~i~~L~~lL~~~~~----~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~--~~~~~~~a~~ 196 (372)
+...|+..||+..|++++.++.. ..+....++.++..|..+.-......+...|..++..++.. +..+...|..
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 56788899999999999994322 24678889999999887765455677888999999999764 6888999999
Q ss_pred HHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402 197 IITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246 (372)
Q Consensus 197 ~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 246 (372)
.|.++..+++.....+...=-++.|+..|+..+. +++.+|...+-.|..
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~-~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQ-EIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCH-HHHHHHHHHHHHHHh
Confidence 9999988776644444424578999999999766 899999888877764
No 140
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.26 E-value=0.00048 Score=44.80 Aligned_cols=55 Identities=31% Similarity=0.175 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 188 PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 188 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
+.+|..|+++|.+++........-.. ..+++.|+.+|+++++ .++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~-~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDD-SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSH-HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCH-HHHHHHHHHHhcC
Confidence 36789999999998865543333333 4799999999998888 9999999999876
No 141
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.25 E-value=0.023 Score=49.01 Aligned_cols=218 Identities=15% Similarity=0.091 Sum_probs=138.8
Q ss_pred CChhHHHHHHHHHhcCCCC-cccccccc-ccCChHHHHHHH-------hcCC--h---HHHHHHHHHHHHhcccccchhh
Q 017402 145 DGFTLQEKALSLLLNLSLD-DDNKVGLV-AEGAVSRVVAAL-------RFGS--P---DCRAIAATIITSLAVVEVNKAT 210 (372)
Q Consensus 145 ~~~~~~~~a~~~L~~l~~~-~~~~~~i~-~~g~i~~lv~~L-------~~~~--~---~~~~~a~~~L~~ls~~~~~~~~ 210 (372)
.+++.++.|+.-|..--.. ++-...+- +-|.+..|++=+ ..++ . .-.-+|...+..++.+++.+..
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 4577788888777664333 22222222 356666665433 1111 1 2234677788888999999988
Q ss_pred hccccchHHHHHHHhhcCCc----hHHHHHHHHHHHhhcCCC--chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHH
Q 017402 211 IGDYPYAINALVSLLQNGKL----IREKKEAATALYALTSFP--ENRKRVVSCGAVPILMRLADAG----LERAVEVLSI 280 (372)
Q Consensus 211 i~~~~g~i~~Lv~ll~~~~~----~~~~~~a~~aL~~L~~~~--~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~ 280 (372)
+.. +...-.|...|+..+. ..++-.++++++.|...+ +....+.+.+.+|..++.++.| +-.|..++..
T Consensus 87 Fl~-a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 87 FLK-AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHH-TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHH-cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 876 5655556666654321 257788999999999854 4667778999999999999777 3458888888
Q ss_pred HhCCHhHHHHHHhccc-------hHHHHHHHH-hcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHH-H----Hh
Q 017402 281 LVKCKEGREEMMRVSG-------CVGVFVKML-KTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICM-G----LL 347 (372)
Q Consensus 281 L~~~~~~~~~i~~~~g-------~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~-~----ll 347 (372)
+-.++.|-..++.+.. ++..++..+ ...+++.-++..++-..++.+ +..+..+.+ .+|..+ + -+
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~aL~~--~LP~~Lrd~~f~~~ 242 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREALRQ--CLPDQLRDGTFSNI 242 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHHHHH--HS-GGGTSSTTTTG
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHHHHH--hCcHHHhcHHHHHH
Confidence 8888888887766433 333333333 447888889999999999976 888777664 233221 1 11
Q ss_pred hcccHHHHHHHHHHHHHHh
Q 017402 348 EDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 348 ~~~~~~v~~~a~~~L~~l~ 366 (372)
-.+++.+|+--..++.++.
T Consensus 243 l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 243 LKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp GCS-HHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHhc
Confidence 1247778887777777764
No 142
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.013 Score=57.35 Aligned_cols=260 Identities=14% Similarity=0.131 Sum_probs=159.1
Q ss_pred hhccCCChHHHHHHHHHHHHHhhcChH-HHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccccccc
Q 017402 96 LTSKSSPLESKLESLTQLTKLSKRDSA-SRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAE 173 (372)
Q Consensus 96 L~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~ 173 (372)
..+..++..+|..|+++|.+--..... +-...-..=+...+.+.-. +.+.+++..|+.+|..+..- -+....-+..
T Consensus 181 mrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq--~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~ 258 (859)
T KOG1241|consen 181 MRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQ--SPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ 258 (859)
T ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeeccc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445778999999999874432111 1111111223344445555 68889999999999886432 3333333334
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhcccc-c----chhhh-------------ccccchHHHHHHHhhcCCc-----
Q 017402 174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVE-V----NKATI-------------GDYPYAINALVSLLQNGKL----- 230 (372)
Q Consensus 174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~----~~~~i-------------~~~~g~i~~Lv~ll~~~~~----- 230 (372)
..+..-+.-++++++++...+...-.+++..+ + +.+.. ....+++|.|+++|...++
T Consensus 259 alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~D 338 (859)
T KOG1241|consen 259 ALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDD 338 (859)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccc
Confidence 45556666778889999998888777665432 1 01110 1112688899999876322
Q ss_pred -hHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh----hh----HHHHHHHHHHHhCCHhHH--HHHHhccchHH
Q 017402 231 -IREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD----AG----LERAVEVLSILVKCKEGR--EEMMRVSGCVG 299 (372)
Q Consensus 231 -~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~----~~----~e~a~~~L~~L~~~~~~~--~~i~~~~g~i~ 299 (372)
=...+.|..+|.-++. .++...++.++..+. ++ ++.++.+...+-..++.. ..++ .++++
T Consensus 339 dWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp 409 (859)
T KOG1241|consen 339 DWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALP 409 (859)
T ss_pred cCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhH
Confidence 1234445555544432 223345666666663 33 566777777666654332 2333 46999
Q ss_pred HHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHH-HHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 300 VFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGD-SRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 300 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
.++.++.+.+--++..+.+.|..++.+-++.+.- ..-.+.+..++.-+. +.+++-.+++|++-.|.+
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE 477 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence 9999999888888999999999999887754432 222334444444443 578889999999988764
No 143
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.23 E-value=0.001 Score=43.22 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=45.5
Q ss_pred hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 310 SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 310 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
+.+|..|+.+|.+++...++...... ..+++.|+.+++++++.||.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46789999999998877666655544 44899999999999999999999999754
No 144
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00031 Score=60.30 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=41.1
Q ss_pred cccCCc-ccCCCce----ecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 017402 10 KCPISL-EIMSDPV----ILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLI 60 (372)
Q Consensus 10 ~C~ic~-~~~~~Pv----~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~ 60 (372)
.||+|. +.+.+|- +-+|||+.|..|+.+.+..|...||.|...+. ...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR-k~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR-KNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh-hcccc
Confidence 599999 4677773 23799999999999999999999999998887 54443
No 145
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.027 Score=57.10 Aligned_cols=231 Identities=16% Similarity=0.118 Sum_probs=160.0
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhc-CCCCccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN-LSLDDDNKV 168 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~-l~~~~~~~~ 168 (372)
|-.++.|-+. --|.+|+..|.++..-.+=.-..-..-|+-|.++++|+ +...+++-.-+-+=.. |+.++..+.
T Consensus 475 PiVLQVLLSQ----vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQ--S~a~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 475 PIVLQVLLSQ----VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQ--SSARELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred chHHHHHHHH----HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhc--cchHhhhhhHHHHHHHHHhcCchhHH
Confidence 3355666543 45788888888888766533333345699999999999 7777777655544433 788888899
Q ss_pred cccccCChHHHHHHHhc-C--ChHHHHHHHHHHHHhcccccc-hhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 169 GLVAEGAVSRVVAALRF-G--SPDCRAIAATIITSLAVVEVN-KATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~-~--~~~~~~~a~~~L~~ls~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
.+++.++-.-.++.|.. + +++-|..|+-+|..+..+... ++.-.+ .+.|..-+..|.++..+-++.=.+.+|..|
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 99998888888888866 3 457777788888888766533 333344 578888888888864436666777888888
Q ss_pred cCC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCH----hHHHHHH-----------hccchH----HH
Q 017402 245 TSF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCK----EGREEMM-----------RVSGCV----GV 300 (372)
Q Consensus 245 ~~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~----~~~~~i~-----------~~~g~i----~~ 300 (372)
=.+ +++|=.=++.++...|+.+|.++ +..|+.+|..+..+. +.+...+ ..+..+ -.
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 764 45666667889999999999655 556778888877741 1111111 012223 36
Q ss_pred HHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402 301 FVKMLKTGSSRAVQCSLFTLSCLCCCS 327 (372)
Q Consensus 301 L~~ll~~~~~~~~~~a~~~L~~l~~~~ 327 (372)
++.+++.+++-++...+.+|..+..+.
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 777888899988888887888877653
No 146
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.18 E-value=0.047 Score=46.40 Aligned_cols=175 Identities=14% Similarity=0.149 Sum_probs=115.6
Q ss_pred HHHHHHHHHhcccccchhhhcc--ccchHHHHHHHhhcCC-chHHHHHHHHHHHhhcCCCc--hhHHHHhcCchHHHHHH
Q 017402 192 AIAATIITSLAVVEVNKATIGD--YPYAINALVSLLQNGK-LIREKKEAATALYALTSFPE--NRKRVVSCGAVPILMRL 266 (372)
Q Consensus 192 ~~a~~~L~~ls~~~~~~~~i~~--~~g~i~~Lv~ll~~~~-~~~~~~~a~~aL~~L~~~~~--~~~~i~~~g~v~~L~~l 266 (372)
-++...|.-++++.+.+..+.. ..-.+.++++.-.... ..-.+-.++++|..|..+++ ....+...++||..++.
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 3556677777888888877755 1123333443333322 23688899999999998664 55667788999999999
Q ss_pred Hhhh----HHHHHHHHHHHhCCHhHHHHHHhccc-------hHHHHHHHH-hcCChhHHHhHHHHHHHHhcCCHHHHHHH
Q 017402 267 ADAG----LERAVEVLSILVKCKEGREEMMRVSG-------CVGVFVKML-KTGSSRAVQCSLFTLSCLCCCSQEICGDS 334 (372)
Q Consensus 267 l~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g-------~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 334 (372)
++.| +-.|..++..+-.++.|-..++.+.. .+..++..+ +.++++...+++++...++.+ +..|..+
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn-prar~aL 255 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN-PRARAAL 255 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-HHHHHHH
Confidence 9877 44588899998888888887766432 233333333 347888899999999999976 8887776
Q ss_pred Hhc---ChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 335 RKE---GVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 335 ~~~---g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
... +.-+--...+-.++...|+--..+++++..
T Consensus 256 ~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 256 RSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HhhCcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence 542 222222222223455556666666666543
No 147
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.016 Score=55.45 Aligned_cols=163 Identities=15% Similarity=0.161 Sum_probs=107.9
Q ss_pred ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHH
Q 017402 187 SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL 266 (372)
Q Consensus 187 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~l 266 (372)
.=..+..++..+..|+...+..-.... ..+||.|.+.|.+... ++++.+..+|.+++..-+|.. |. -.+|.|++-
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~-evr~a~~~~l~~~~svidN~d-I~--~~ip~Lld~ 341 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKP-EVRKAGIETLLKFGSVIDNPD-IQ--KIIPTLLDA 341 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCH-HHHHHHHHHHHHHHHhhccHH-HH--HHHHHHHHH
Confidence 335567788888888766554444444 6899999999999888 999999999999998666655 21 256778877
Q ss_pred Hhhh---HHHHHHHHHHHhCCHhHHHHHHh--ccchHHHHHHHHh----cCChhHHHhHHHHHHHHhcCC--HHHHHHHH
Q 017402 267 ADAG---LERAVEVLSILVKCKEGREEMMR--VSGCVGVFVKMLK----TGSSRAVQCSLFTLSCLCCCS--QEICGDSR 335 (372)
Q Consensus 267 l~~~---~e~a~~~L~~L~~~~~~~~~i~~--~~g~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~ 335 (372)
+.++ ...++..|.. ..++. ++-.+..++.+++ ..+...++.++.+.+|+|..- +.......
T Consensus 342 l~dp~~~~~e~~~~L~~--------ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl 413 (569)
T KOG1242|consen 342 LADPSCYTPECLDSLGA--------TTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL 413 (569)
T ss_pred hcCcccchHHHHHhhcc--------eeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH
Confidence 7555 3444443322 22222 1223444444444 456777899999999999863 22222222
Q ss_pred hcChhHHHHHHhhcccHHHHHHHHHHHH
Q 017402 336 KEGVLDICMGLLEDDNEKVRRNANNLIQ 363 (372)
Q Consensus 336 ~~g~~~~l~~ll~~~~~~v~~~a~~~L~ 363 (372)
.. ++|-+-..+.+..+++|.-|+++|-
T Consensus 414 ~~-Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 414 PS-LLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred HH-HhhHHHHHhcCCChhHHHHHHHHHH
Confidence 22 5555666666668999999999993
No 148
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.14 E-value=0.00059 Score=46.26 Aligned_cols=44 Identities=32% Similarity=0.629 Sum_probs=32.2
Q ss_pred cccCCcccCC----Ccee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 10 KCPISLEIMS----DPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 10 ~C~ic~~~~~----~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+||-|..-|. -|+. -.|.|.|...||.+|+.. ...||.+++++.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 4555554331 1333 259999999999999987 778999998765
No 149
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.13 E-value=0.039 Score=55.38 Aligned_cols=172 Identities=13% Similarity=0.075 Sum_probs=112.2
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
..++.|+...+|.++|++|...+..+... +.+.... ...++.+++-| ++.-.+..|++++..++..+-...
T Consensus 572 ~tl~rL~a~d~DqeVkeraIscmgq~i~~---fgD~l~~eL~~~L~il~eRl----~nEiTRl~AvkAlt~Ia~S~l~i~ 644 (1233)
T KOG1824|consen 572 CTLQRLKATDSDQEVKERAISCMGQIIAN---FGDFLGNELPRTLPILLERL----GNEITRLTAVKALTLIAMSPLDID 644 (1233)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHH----hchhHHHHHHHHHHHHHhccceee
Confidence 46778888878999999999888776642 2222211 12333333333 456788999999998877643222
Q ss_pred cccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 169 GLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 169 ~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
.... ..+++.+...++......+.....++-.|..+...........-++..+-.++...+- .+...|...|..+...
T Consensus 645 l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdl-hvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 645 LSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDL-HVTQLAVAFLTTLAII 723 (1233)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHHHHHhc
Confidence 1111 4578888888888777777777777776655432111111112355566666666555 7888999999999887
Q ss_pred CchhHHHHhcCchHHHHHHHhhh
Q 017402 248 PENRKRVVSCGAVPILMRLADAG 270 (372)
Q Consensus 248 ~~~~~~i~~~g~v~~L~~ll~~~ 270 (372)
......-+..-.++.++.++.++
T Consensus 724 ~ps~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 724 QPSSLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred ccHHHHHHhhhhHHHHHHHhhCc
Confidence 77666666667888899988776
No 150
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.11 E-value=0.0094 Score=58.08 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=92.9
Q ss_pred chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhH---HHHhcCchHHHHHHHhhh-HHH---HHHHHHHHhCCHhHH
Q 017402 216 YAINALVSLLQNGKLIREKKEAATALYALTSFPENRK---RVVSCGAVPILMRLADAG-LER---AVEVLSILVKCKEGR 288 (372)
Q Consensus 216 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~---~i~~~g~v~~L~~ll~~~-~e~---a~~~L~~L~~~~~~~ 288 (372)
.++...+..|++++. .++..|+..++.++..=.++. .+...|. .|.+.|... .|. .+.+|..+...- +.
T Consensus 799 qi~stiL~rLnnksa-~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvi-gm 874 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSA-KVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVI-GM 874 (1172)
T ss_pred HHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhc-cc
Confidence 355566677777776 899999998888775333332 2223333 355666444 333 223333222211 11
Q ss_pred HHH-HhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 289 EEM-MRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 289 ~~i-~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
..+ --..+.+|.|.-+|++..+++++++...+..||..+++....--..-+---|+++|++.+.++|++|..-+-.+.
T Consensus 875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 111 112468999999999999999999999999999988864322222335556788899999999999987655443
No 151
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00035 Score=46.89 Aligned_cols=49 Identities=27% Similarity=0.522 Sum_probs=34.8
Q ss_pred CCCccccCCcccCCC-ceec-CCchHhhHHHHHHHHhc--CCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSD-PVIL-SSGHTFDRASIQRWLDS--GHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~-Pv~~-~cgh~~c~~ci~~~~~~--~~~~CP~c~~~~~ 54 (372)
+-+-.||-|.-.=.| |.++ .|.|.|...||.+|+.. +...||.||+.+.
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 334456666554433 4443 59999999999999964 4568999998764
No 152
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00042 Score=62.45 Aligned_cols=50 Identities=20% Similarity=0.585 Sum_probs=40.4
Q ss_pred CCCCccccCCcccCCCce-----e---cCCchHhhHHHHHHHHhcC------CCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPV-----I---LSSGHTFDRASIQRWLDSG------HRTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv-----~---~~cgh~~c~~ci~~~~~~~------~~~CP~c~~~~~ 54 (372)
-..+..|.||++...++. . .+|.|.||..||..|.... ...||.||....
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 356889999999887776 3 4699999999999999532 257999998765
No 153
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.0016 Score=62.44 Aligned_cols=184 Identities=20% Similarity=0.202 Sum_probs=123.5
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccc-------cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 175 AVSRVVAALRFGSPDCRAIAATIITSLAVVE-------VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 175 ~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-------~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
.....++++++++.++|..|..+++..+.-. .+..... ..++..+.+.+++.+- .++..|+++|..+-..
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~--D~aF~~vC~~v~D~sl-~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK--DAAFSSVCRAVRDRSL-SVRVEAAKALGEFEQV 311 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH--HHHHHHHHHHHhcCce-eeeehHHHHhchHHHh
Confidence 4677888998899999999887776554221 1112222 2577888888888877 8899999988877653
Q ss_pred C-chhHHHHhcCchHHHHHHHhhh---HHHHHHHHHHH--hC------------CHhHHHHHHhccchHHHHHHHHhcCC
Q 017402 248 P-ENRKRVVSCGAVPILMRLADAG---LERAVEVLSIL--VK------------CKEGREEMMRVSGCVGVFVKMLKTGS 309 (372)
Q Consensus 248 ~-~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~L~~L--~~------------~~~~~~~i~~~~g~i~~L~~ll~~~~ 309 (372)
. +...+-.+. .++.-+... .+..-...++. ++ .+++-..|+. .|+-..++.-+.+.-
T Consensus 312 See~i~QTLdK----Klms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~-sGACGA~VhGlEDEf 386 (823)
T KOG2259|consen 312 SEEIIQQTLDK----KLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIP-SGACGALVHGLEDEF 386 (823)
T ss_pred HHHHHHHHHHH----HHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhcccccccccc-ccccceeeeechHHH
Confidence 2 333333222 222222111 12222222222 11 1223345666 678888888887766
Q ss_pred hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCCCC
Q 017402 310 SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPSM 371 (372)
Q Consensus 310 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 371 (372)
-+++++|+..+..|+..+|..... .++.|++.+.++-+.||.+|..+|+.+..+.++
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i 443 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI 443 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee
Confidence 789999999999999988877655 678999999999999999999999999887554
No 154
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=97.06 E-value=0.025 Score=52.41 Aligned_cols=240 Identities=18% Similarity=0.171 Sum_probs=132.6
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
+-++.-|. ++.+...|..++-.|..-+. ++.++..+...|.+..+++.+.....++..-..++.++.-++.+..+...
T Consensus 24 ~ylld~l~-~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 24 EYLLDGLE-SSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHhhcc-cCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 44666676 33466788889999988888 78899999999999999999963223333444555555666666555555
Q ss_pred ccccCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhc------C--CchHHHHHHHHH
Q 017402 170 LVAEGAVSRVVAALRFG-SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN------G--KLIREKKEAATA 240 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~------~--~~~~~~~~a~~a 240 (372)
+...+.+..+++++... ..+.....- .....+-.++.+ ..+...-+.+.. . ..-..+.-|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~--~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ--KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH--HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 55566777778888611 000000000 000000011111 111111111100 0 001233344444
Q ss_pred HHhhc------------C---CCchhHHHHhcCchHHHHHHHhh----h----------------HHHHHHHHHHHhCC-
Q 017402 241 LYALT------------S---FPENRKRVVSCGAVPILMRLADA----G----------------LERAVEVLSILVKC- 284 (372)
Q Consensus 241 L~~L~------------~---~~~~~~~i~~~g~v~~L~~ll~~----~----------------~e~a~~~L~~L~~~- 284 (372)
|-.++ . .+.-+..+.+.|+++.+++.+.. . .+.++.+|.+.+..
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 44442 0 11235667778899999988741 1 34588888888764
Q ss_pred HhHHHHHHhcc-chHH-HHHHHHhcC---ChhHHHhHHHHHHHHhcCCHHHHHHHHhcCh
Q 017402 285 KEGREEMMRVS-GCVG-VFVKMLKTG---SSRAVQCSLFTLSCLCCCSQEICGDSRKEGV 339 (372)
Q Consensus 285 ~~~~~~i~~~~-g~i~-~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 339 (372)
++++....... +.++ .+..++... .......+++++.|+..++++.+.++...++
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l 313 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL 313 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence 44455555432 2333 333333322 2333578999999999998877777665543
No 155
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.02 E-value=0.00045 Score=42.69 Aligned_cols=43 Identities=23% Similarity=0.433 Sum_probs=22.1
Q ss_pred ccCCcccCC--Cceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCC
Q 017402 11 CPISLEIMS--DPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPL 53 (372)
Q Consensus 11 C~ic~~~~~--~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~ 53 (372)
||+|.+.+. +--.. +||+.+|+.|..+........||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 799998872 22233 58999999999988876678899999865
No 156
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.99 E-value=0.0001 Score=50.43 Aligned_cols=47 Identities=26% Similarity=0.608 Sum_probs=22.9
Q ss_pred CccccCCcccCC-C---ceec----CCchHhhHHHHHHHHhc--CC--------CCCCCCCCCCC
Q 017402 8 DFKCPISLEIMS-D---PVIL----SSGHTFDRASIQRWLDS--GH--------RTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~-~---Pv~~----~cgh~~c~~ci~~~~~~--~~--------~~CP~c~~~~~ 54 (372)
+..|+||...+. + |+.. .|+.+|+..|+.+|+.. +. .+||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 568999998754 2 4332 59999999999999963 11 25999988764
No 157
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.11 Score=53.56 Aligned_cols=215 Identities=15% Similarity=0.188 Sum_probs=131.1
Q ss_pred CCChhHHHHHHHHHhcCCCCccccccccc--cCChHHHHHHHhcCChHHHHHHHHHHHHhccc--ccchhhhccccchHH
Q 017402 144 SDGFTLQEKALSLLLNLSLDDDNKVGLVA--EGAVSRVVAALRFGSPDCRAIAATIITSLAVV--EVNKATIGDYPYAIN 219 (372)
Q Consensus 144 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~g~i~ 219 (372)
+.++.+|..+.++|..++..+.......+ ......|..-+++.+...+...+..|..+-.. .+....+.. .|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k---~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK---LIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH---HHH
Confidence 34778999999999998877444332222 12333344444444555555555555444322 234444433 455
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcC------chHHHHHHHhhh-----HHHHHHHHHHHhCCHhHH
Q 017402 220 ALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCG------AVPILMRLADAG-----LERAVEVLSILVKCKEGR 288 (372)
Q Consensus 220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g------~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~ 288 (372)
.++=.++..+. ..+..|..+|..+.. .....+.| .|...+..+..+ ......-|-.+...-...
T Consensus 742 EvIL~~Ke~n~-~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNV-KARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHhcccccH-HHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 55544566666 889999999998873 22222222 555666666433 112221122222211122
Q ss_pred HHHHh---ccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 289 EEMMR---VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 289 ~~i~~---~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
..+.. ..+.+..+...|.++++.+...|++.+..+++..|+.+-.--..-+++.++.++++.+-.+|.+...+|..|
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 22222 124566677777889999999999999999988787665555555899999999999999999999999765
Q ss_pred h
Q 017402 366 S 366 (372)
Q Consensus 366 ~ 366 (372)
-
T Consensus 897 i 897 (1176)
T KOG1248|consen 897 I 897 (1176)
T ss_pred H
Confidence 3
No 158
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.93 E-value=0.032 Score=44.55 Aligned_cols=114 Identities=11% Similarity=0.102 Sum_probs=89.6
Q ss_pred cccccCChHHHHHHHhcCC------hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC-chHHHHHHHHHH
Q 017402 169 GLVAEGAVSRVVAALRFGS------PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK-LIREKKEAATAL 241 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~------~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~a~~aL 241 (372)
.+.+.||+..|+++++++. .+....+..++..|-.++...+.... ...|...+....... ++.+...|+..|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHHH
Confidence 4678899999999999876 36777888999998877766777777 689999999988654 358999999999
Q ss_pred HhhcCCCchhHHHHhcC-chHHHHHHHhhh----HHHHHHHHHHHhC
Q 017402 242 YALTSFPENRKRVVSCG-AVPILMRLADAG----LERAVEVLSILVK 283 (372)
Q Consensus 242 ~~L~~~~~~~~~i~~~g-~v~~L~~ll~~~----~e~a~~~L~~L~~ 283 (372)
-++..++......++.+ -++.|+..|..+ +.++++.+-.|-.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999888877777665 578899999654 4556666665544
No 159
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.039 Score=52.29 Aligned_cols=231 Identities=16% Similarity=0.129 Sum_probs=147.4
Q ss_pred CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc--cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402 131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA--EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK 208 (372)
Q Consensus 131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~ 208 (372)
+.||.|-+-+. ..++..+...+.-|..|-.-++. + +.. ...++.|..+|++++.+++..+-.++.++-..-.++
T Consensus 167 ~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds~P~~-~-m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 167 EFIPLLRERIY--VINPMTRQFLVSWLYVLDSVPDL-E-MISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHhcCCcH-H-HHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 44555555555 56788888888877776444432 2 222 467788888999999999976666665553322233
Q ss_pred hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHH---HHHHHH
Q 017402 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-----LERA---VEVLSI 280 (372)
Q Consensus 209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a---~~~L~~ 280 (372)
.........++.++.-+.+.++ .++..|+.-|.....-...--...-.|++..++..+.+. .+.+ -..|..
T Consensus 243 P~s~d~~~~i~vlv~~l~ss~~-~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 243 PSSMDYDDMINVLVPHLQSSEP-EIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK 321 (675)
T ss_pred ccccCcccchhhccccccCCcH-HHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence 3332435689999999998887 888888887777666444333333456666666666433 1221 123444
Q ss_pred HhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHH
Q 017402 281 LVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANN 360 (372)
Q Consensus 281 L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~ 360 (372)
++..+...+. +.....++.|.+.+.+.....+-.++..+..+-...| +.-......+.+.|+.-+.+.+++|-..+..
T Consensus 322 l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ 399 (675)
T KOG0212|consen 322 LVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALS 399 (675)
T ss_pred HHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHH
Confidence 5554544444 3324578899999988888888888888877755423 2222233457888888888888888888877
Q ss_pred HHHHHhcC
Q 017402 361 LIQTLSGN 368 (372)
Q Consensus 361 ~L~~l~~~ 368 (372)
+|..+-.+
T Consensus 400 lla~i~~s 407 (675)
T KOG0212|consen 400 LLASICSS 407 (675)
T ss_pred HHHHHhcC
Confidence 77655443
No 160
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00053 Score=59.87 Aligned_cols=48 Identities=31% Similarity=0.611 Sum_probs=40.7
Q ss_pred CCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
++.-.||+|..--.+|..+. +|..||..|+..++. +..+||+++.+..
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 45567999999999997765 799999999999998 4788999987655
No 161
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.85 E-value=0.0021 Score=40.48 Aligned_cols=41 Identities=24% Similarity=0.622 Sum_probs=32.1
Q ss_pred cccCCcc--cCCCceecCCc-----hHhhHHHHHHHHhcC-CCCCCCCC
Q 017402 10 KCPISLE--IMSDPVILSSG-----HTFDRASIQRWLDSG-HRTCPITK 50 (372)
Q Consensus 10 ~C~ic~~--~~~~Pv~~~cg-----h~~c~~ci~~~~~~~-~~~CP~c~ 50 (372)
.|-||.+ .-.+|...||. +.+...|+.+|+... ..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889986 44577778874 779999999999764 55899985
No 162
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.85 E-value=0.23 Score=45.57 Aligned_cols=90 Identities=23% Similarity=0.252 Sum_probs=61.5
Q ss_pred CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402 88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK 167 (372)
Q Consensus 88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~ 167 (372)
..+.+++.|.+. +..+|..+...+..+.. .-.++.+..++. +.+..++..|+.+|..+-.
T Consensus 44 ~~~~~~~~l~~~--~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~--d~~~~vr~~a~~aLg~~~~----- 103 (335)
T COG1413 44 AADELLKLLEDE--DLLVRLSAAVALGELGS-----------EEAVPLLRELLS--DEDPRVRDAAADALGELGD----- 103 (335)
T ss_pred hHHHHHHHHcCC--CHHHHHHHHHHHhhhch-----------HHHHHHHHHHhc--CCCHHHHHHHHHHHHccCC-----
Confidence 345677777765 67788888777544433 225777888888 7777888888887766532
Q ss_pred ccccccCChHHHHHHHh-cCChHHHHHHHHHHHHhc
Q 017402 168 VGLVAEGAVSRVVAALR-FGSPDCRAIAATIITSLA 202 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~-~~~~~~~~~a~~~L~~ls 202 (372)
...++.++..+. +.+..++..++++|..+-
T Consensus 104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 104 -----PEAVPPLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 334567777777 467777777777777664
No 163
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.84 E-value=0.0092 Score=43.89 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHH--hcCChhHHHhHHHHHHHHhcCCHHHHHHHHhc
Q 017402 272 ERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKML--KTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE 337 (372)
Q Consensus 272 e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 337 (372)
...+.+|+||+. +...++.+.+ .|+++.++..- +..+|.+++.|..++.++|..++++++.+.+.
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 356788999998 5666777777 67899988876 34689999999999999999999998877553
No 164
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.84 E-value=0.015 Score=49.38 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc---CCChhHHHHHHHHHhcCCCCccc--cccccccCChHHHH
Q 017402 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH---SDGFTLQEKALSLLLNLSLDDDN--KVGLVAEGAVSRVV 180 (372)
Q Consensus 106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~lv 180 (372)
.-+|+..|+-++. .++.|..|.++.+--.+-.+|... .....++..++++|..|...++- ..-+...+++|..+
T Consensus 96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3467777777777 678999999998777777777632 23456899999999998877442 23344689999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccccchhhhccccc-------hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHH
Q 017402 181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY-------AINALVSLLQNGKLIREKKEAATALYALTSFPENRKR 253 (372)
Q Consensus 181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-------~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 253 (372)
+.+..|+...+..|+.++..+-.++.+-..|..... .+..++.-+.+..++.+.+.+.++..+|+.++..|..
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a 254 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA 254 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999888876655544222 2223333333333448999999999999999987776
Q ss_pred HH
Q 017402 254 VV 255 (372)
Q Consensus 254 i~ 255 (372)
+.
T Consensus 255 L~ 256 (293)
T KOG3036|consen 255 LR 256 (293)
T ss_pred HH
Confidence 64
No 165
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.00099 Score=55.69 Aligned_cols=53 Identities=19% Similarity=0.537 Sum_probs=44.4
Q ss_pred CCccccCCcccCCCce----ecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc
Q 017402 7 DDFKCPISLEIMSDPV----ILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP 61 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv----~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~ 61 (372)
..|.||+|.+.+.+.+ ..+|||.||..|.++.+.. ...||+|+.++. ..++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plk-drdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLK-DRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCc-ccceEe
Confidence 5689999999988764 4589999999999987764 778999999999 666655
No 166
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.52 Score=46.90 Aligned_cols=216 Identities=15% Similarity=0.165 Sum_probs=114.5
Q ss_pred CChhHHHHHHHHHhcCCCCccc-ccccc--------------ccC---ChHHHHHHHh-cCChHHHHHHHHHHHHhcccc
Q 017402 145 DGFTLQEKALSLLLNLSLDDDN-KVGLV--------------AEG---AVSRVVAALR-FGSPDCRAIAATIITSLAVVE 205 (372)
Q Consensus 145 ~~~~~~~~a~~~L~~l~~~~~~-~~~i~--------------~~g---~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~ 205 (372)
.+|-+|...++.|.-|-.++.. .+.|- +.| ..+.+..++. ..+...+..|+-+|..+-.+.
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~ 325 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNR 325 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCC
Confidence 3567888888888887766322 22111 011 1222222222 256778888888888887776
Q ss_pred cchhhhccccc----------hH----HHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-
Q 017402 206 VNKATIGDYPY----------AI----NALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG- 270 (372)
Q Consensus 206 ~~~~~i~~~~g----------~i----~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~- 270 (372)
++....+...+ ++ ..+++.|++.+. .++..|++.++.|.... |...+ ++.|+..|.+.
T Consensus 326 d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~-SIkrralELs~~lvn~~-Nv~~m-----v~eLl~fL~~~d 398 (866)
T KOG1062|consen 326 DNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDV-SIKRRALELSYALVNES-NVRVM-----VKELLEFLESSD 398 (866)
T ss_pred ccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHhccc-cHHHH-----HHHHHHHHHhcc
Confidence 55444433111 11 245677777777 88999999888887544 43333 34577777433
Q ss_pred ---HHHHHHHHHHHhC----CHhH----HHHHHhc------cchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC------
Q 017402 271 ---LERAVEVLSILVK----CKEG----REEMMRV------SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS------ 327 (372)
Q Consensus 271 ---~e~a~~~L~~L~~----~~~~----~~~i~~~------~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------ 327 (372)
+..+..-+..++. .... .-.+..+ ...+..++.++.+..+...+.+..-|+.-...+
T Consensus 399 ~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is 478 (866)
T KOG1062|consen 399 EDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDIS 478 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhh
Confidence 3334433444433 1111 1111111 335667777776654444444333333321111
Q ss_pred ------------HHHHH------------HHHhcChhHHHHHHhhc--ccHHHHHHHHHHHHHHhc
Q 017402 328 ------------QEICG------------DSRKEGVLDICMGLLED--DNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 328 ------------~~~~~------------~~~~~g~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~ 367 (372)
.|+-. ..-+..++..+..++.+ .+..+|..|..+|..|+.
T Consensus 479 ~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 479 QEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred hhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 01111 11224477777777765 357778888888876653
No 167
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.72 E-value=0.016 Score=49.92 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCC---hhHHHHHHHHHhcCCCCcc--ccccccccCChHHHH
Q 017402 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDG---FTLQEKALSLLLNLSLDDD--NKVGLVAEGAVSRVV 180 (372)
Q Consensus 106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~---~~~~~~a~~~L~~l~~~~~--~~~~i~~~g~i~~lv 180 (372)
.-+|+..++-+|. +++.|..|.++.+.-.|..+|...+.+ ..++..++++++.|...++ ...-+.+.+.+|..+
T Consensus 67 VcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 67 VCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 4467888888888 678999999999888888999743333 4478999999999887533 333455789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccccchhhhccccc-------hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHH
Q 017402 181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY-------AINALVSLLQNGKLIREKKEAATALYALTSFPENRKR 253 (372)
Q Consensus 181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-------~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 253 (372)
+.++.|+.-.|..|+.++..+-.++.+-..+.+... ++..++.-+....++.+.++..++-..|+.++..+..
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a 225 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA 225 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999999999888776666655333 3333333333343459999999999999999998887
Q ss_pred HHh
Q 017402 254 VVS 256 (372)
Q Consensus 254 i~~ 256 (372)
+..
T Consensus 226 L~~ 228 (262)
T PF04078_consen 226 LRQ 228 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 168
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.22 Score=48.76 Aligned_cols=200 Identities=11% Similarity=0.156 Sum_probs=114.3
Q ss_pred CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc----------------------
Q 017402 86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH---------------------- 143 (372)
Q Consensus 86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---------------------- 143 (372)
.|.+|.|++.|.++ |+.++..|+..+..|++.+|.|.-. .-|.+..+|..+
T Consensus 180 r~~FprL~EkLeDp--Dp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR 252 (877)
T KOG1059|consen 180 RPCFPRLVEKLEDP--DPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR 252 (877)
T ss_pred hhhHHHHHHhccCC--CchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCch
Confidence 56678899999887 8999999999999999988855322 123333444321
Q ss_pred --------------C-CChhHHHHHHHHHhcC--CCC-ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc
Q 017402 144 --------------S-DGFTLQEKALSLLLNL--SLD-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE 205 (372)
Q Consensus 144 --------------~-~~~~~~~~a~~~L~~l--~~~-~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~ 205 (372)
+ .-..+...++.++... +.+ +++-..+ .=.++.|-.++.++|++.+-.++-++..+....
T Consensus 253 LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH 330 (877)
T KOG1059|consen 253 LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH 330 (877)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC
Confidence 1 1122233333333221 111 1111100 012444445556778888888888888776433
Q ss_pred cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhh--h---HHHHHHHHHH
Q 017402 206 VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA--G---LERAVEVLSI 280 (372)
Q Consensus 206 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~--~---~e~a~~~L~~ 280 (372)
-..+. .--+.++..|.+.++ .++-.|+..|+.+...+ |... ++..|+..+.. + +...+.-+-.
T Consensus 331 --p~~Vq---a~kdlIlrcL~DkD~-SIRlrALdLl~gmVskk-Nl~e-----IVk~LM~~~~~ae~t~yrdell~~II~ 398 (877)
T KOG1059|consen 331 --PKAVQ---AHKDLILRCLDDKDE-SIRLRALDLLYGMVSKK-NLME-----IVKTLMKHVEKAEGTNYRDELLTRIIS 398 (877)
T ss_pred --HHHHH---HhHHHHHHHhccCCc-hhHHHHHHHHHHHhhhh-hHHH-----HHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 12222 235567888888888 99999999999888543 3333 34456655521 1 3444444444
Q ss_pred HhCCHhHHHHHHhccchHHHHHHHHhc
Q 017402 281 LVKCKEGREEMMRVSGCVGVFVKMLKT 307 (372)
Q Consensus 281 L~~~~~~~~~i~~~~g~i~~L~~ll~~ 307 (372)
+|.. .+-..|..-+..+..|+++.+-
T Consensus 399 iCS~-snY~~ItdFEWYlsVlveLa~l 424 (877)
T KOG1059|consen 399 ICSQ-SNYQYITDFEWYLSVLVELARL 424 (877)
T ss_pred Hhhh-hhhhhhhhHHHHHHHHHHHHhc
Confidence 4442 3334455545667777777653
No 169
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.043 Score=54.13 Aligned_cols=195 Identities=13% Similarity=0.133 Sum_probs=134.7
Q ss_pred CCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHH-hcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402 162 LDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITS-LAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA 240 (372)
Q Consensus 162 ~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~-ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 240 (372)
.....+...++.|+...|+++...+..+.+..+..+|.. ++.. . +. . ...++++.+.+......--...++.+
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~--~-~~--~-~~v~~~~~s~~~~d~~~~en~E~L~a 565 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP--G-ER--S-YEVVKPLDSALHNDEKGLENFEALEA 565 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC--C-Cc--h-hhhhhhhcchhhhhHHHHHHHHHHHH
Confidence 345556678899999999999999899999988888882 1111 0 11 1 24677777776654433445578999
Q ss_pred HHhhcCCC-chhHHHHhcCchHHHHHHH-hh-h--HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhcCChhHHH
Q 017402 241 LYALTSFP-ENRKRVVSCGAVPILMRLA-DA-G--LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKTGSSRAVQ 314 (372)
Q Consensus 241 L~~L~~~~-~~~~~i~~~g~v~~L~~ll-~~-~--~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~~~~~~~~ 314 (372)
+.||++.+ ..|..+++.-+++.+-.++ ++ . +..++..+.||.-++..-..... .....+.....+....+....
T Consensus 566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 99999854 5778888775665544444 22 2 66688899999998877665444 345666666666666667777
Q ss_pred hHHHHHHHHhcCCHHHHHHHHh-cChhHHHHHHhhcccHHHHHHHHHHH
Q 017402 315 CSLFTLSCLCCCSQEICGDSRK-EGVLDICMGLLEDDNEKVRRNANNLI 362 (372)
Q Consensus 315 ~a~~~L~~l~~~~~~~~~~~~~-~g~~~~l~~ll~~~~~~v~~~a~~~L 362 (372)
.+++++..|.......+..+.+ ......+..++.+++++++.......
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ 694 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVII 694 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhh
Confidence 8888888787776766663333 45688888888888888876655444
No 170
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.11 Score=50.73 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=120.4
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc
Q 017402 134 SAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG 212 (372)
Q Consensus 134 ~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 212 (372)
+-++.+|. +..+-++..|+.+|..+... ++.- ...+|.|++-|.++|+.++..|..++..||.-+. +..+
T Consensus 147 ~Dv~tLL~--sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnP-knyL- 217 (877)
T KOG1059|consen 147 DDVFTLLN--SSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNP-QNYL- 217 (877)
T ss_pred HHHHHHHh--cCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCC-cccc-
Confidence 44667777 77888999999999886544 2221 2357899999999999999999999999986542 2221
Q ss_pred cccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc-hhHHHHhcCchHHHHHHHhhhHH-----HHHHH-HH-HHhCC
Q 017402 213 DYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE-NRKRVVSCGAVPILMRLADAGLE-----RAVEV-LS-ILVKC 284 (372)
Q Consensus 213 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~L~~ll~~~~e-----~a~~~-L~-~L~~~ 284 (372)
..-|.+.++|...+..=+....+....+|+--+. -..+ .+++|..++.+... .|+.. ++ +++.+
T Consensus 218 ---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 218 ---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 2345666666654332566666777777776432 2222 45677777755411 01110 00 23332
Q ss_pred H-hHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHH
Q 017402 285 K-EGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQ 363 (372)
Q Consensus 285 ~-~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~ 363 (372)
. +.-..+.- ++..|-.++.+.++..+-.++-++..+....+...+.- -+.++..+.+.++.+|-.|..+|-
T Consensus 290 ~~d~~asiqL---CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSASIQL---CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred CCCcHHHHHH---HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHH
Confidence 2 22222222 45566556666666666666666666665545443321 234555555666666666665554
No 171
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.64 E-value=0.0013 Score=57.86 Aligned_cols=52 Identities=15% Similarity=0.465 Sum_probs=40.5
Q ss_pred CCCCccccCCcccCCC--ce--ecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSD--PV--ILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSL 59 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~--Pv--~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 59 (372)
-...|.|||+...|.. +. ..+|||.|+..++.+.- ....||.|..+|. ..++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~-~~Di 165 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFT-EEDI 165 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccc-cCCE
Confidence 3567999999999953 22 34899999999998873 3557999999999 5554
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.61 E-value=0.0015 Score=57.12 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=36.4
Q ss_pred CCccccCCcccCC--Ccee--cCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMS--DPVI--LSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~--~Pv~--~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
++..||+|.+.|. |--. .+||...|++|.......-+..||.||..+.
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 3445999999875 3323 4689999999987766555678999999877
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.038 Score=56.05 Aligned_cols=172 Identities=18% Similarity=0.154 Sum_probs=126.7
Q ss_pred HHHHHHhccccc-chhhh--ccccchHHHHHHHhhcCCchHHHHHHHHHHHh--hcCCCchhHHHHhcCchHHHHHHHhh
Q 017402 195 ATIITSLAVVEV-NKATI--GDYPYAINALVSLLQNGKLIREKKEAATALYA--LTSFPENRKRVVSCGAVPILMRLADA 269 (372)
Q Consensus 195 ~~~L~~ls~~~~-~~~~i--~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~--L~~~~~~~~~i~~~g~v~~L~~ll~~ 269 (372)
.+||.-|+..-+ ..+.+ .-..|++|-.++||++... + .+..+-.|+. |+.++.+...+++.++-.-.+..|+.
T Consensus 488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~-E-LrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR-E-LRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH-h-hhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 345555554332 33332 2224999999999998765 4 4445555553 67788888899988776666666644
Q ss_pred -h------HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcC-ChhHHHhHHHHHHHHhcCCHHHHHHHHhcChh
Q 017402 270 -G------LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTG-SSRAVQCSLFTLSCLCCCSQEICGDSRKEGVL 340 (372)
Q Consensus 270 -~------~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~ 340 (372)
+ +..++.+|+.++.+ ..|++...+ .+.+..=.+.+.++ .+-.++=.+-.|..|=.+.++++=.-++.++.
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 2 44588899999885 667777777 77888777777664 47778888888888877767777777889999
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 341 DICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 341 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
++|..++.+.-++||.+|..+|..|-++.
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999998776653
No 174
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0022 Score=57.36 Aligned_cols=47 Identities=23% Similarity=0.622 Sum_probs=35.0
Q ss_pred CccccCCcccCCCce---ec-CCchHhhHHHHHHHHhcCC--CCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPV---IL-SSGHTFDRASIQRWLDSGH--RTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv---~~-~cgh~~c~~ci~~~~~~~~--~~CP~c~~~~~ 54 (372)
.-.|.||.+.+..-. .+ .|||+|+-.|+.+|+...+ .+||.|+-.+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 346999966543221 23 4999999999999998654 48999996666
No 175
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.54 E-value=0.095 Score=43.36 Aligned_cols=111 Identities=24% Similarity=0.317 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCC-hHHHH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA-VSRVV 180 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~-i~~lv 180 (372)
++.+|.+++..+..|+...+..- ...++.+...|. +.++.++..|+.+|..|...+-.+. .|- +..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~--D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLR--DEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHH
Confidence 46789999999999998665332 235888999999 8999999999999999876533222 343 48888
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhc
Q 017402 181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN 227 (372)
Q Consensus 181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~ 227 (372)
..+.+++++++..|...+..++... +...+. ..++.++..+..
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~~-~~~~i~---~~~~e~i~~l~~ 112 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKKR-NPNIIY---NNFPELISSLNN 112 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhc-cchHHH---HHHHHHHHHHhC
Confidence 8999999999999999999998653 223332 345555555554
No 176
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.51 E-value=0.011 Score=44.59 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=58.2
Q ss_pred hHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 297 CVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 297 ~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
.+..|+.+|.. .++....-|+.=|..++.+.|+.+..+-+.|+=..+++++.+.+++||..|..+++.+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 67888999943 4666677888889999998899999999999999999999999999999999999765
No 177
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.034 Score=54.62 Aligned_cols=240 Identities=16% Similarity=0.126 Sum_probs=143.3
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
++.+.... +.|.+.++=.--.+.+.+...+.. ..+.+..+++=.. +.++.++..|++.+..+-.+.-.
T Consensus 52 ~dvvk~~~--T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~--d~np~iR~lAlrtm~~l~v~~i~--- 119 (734)
T KOG1061|consen 52 PDVVKCMQ--TRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCE--DPNPLIRALALRTMGCLRVDKIT--- 119 (734)
T ss_pred HHHHhhcc--cCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCC--CCCHHHHHHHhhceeeEeehHHH---
Confidence 44444333 235666666666777777766632 1233444433333 56788888888888777543221
Q ss_pred ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc
Q 017402 170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE 249 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~ 249 (372)
.-...++.+.++++++.+|..++-.+.++- +.+.+.... .|.++.|-.++.+.++ .+..+|+.+|..+...+.
T Consensus 120 ---ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~-~gl~~~L~~ll~D~~p-~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 120 ---EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVED-SGLVDALKDLLSDSNP-MVVANALAALSEIHESHP 192 (734)
T ss_pred ---HHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccc-cchhHHHHHHhcCCCc-hHHHHHHHHHHHHHHhCC
Confidence 335688999999999999998888777763 344555555 7999999999997666 999999999999987543
Q ss_pred h-hHHHHhcCchHHHHHHHhhhHH-HHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402 250 N-RKRVVSCGAVPILMRLADAGLE-RAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS 327 (372)
Q Consensus 250 ~-~~~i~~~g~v~~L~~ll~~~~e-~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 327 (372)
+ -.--+..-.+..++..+....| .-+.+|.+++..-.... .+....+..+...+++.++.+.-.+..++..+...-
T Consensus 193 ~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 193 SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 2 1111111123334444433322 23455555555321111 000113455566667777777777787777776653
Q ss_pred HHHHHHHHhcChhHHHHHHhhccc
Q 017402 328 QEICGDSRKEGVLDICMGLLEDDN 351 (372)
Q Consensus 328 ~~~~~~~~~~g~~~~l~~ll~~~~ 351 (372)
.. .....-..+.+.++.++....
T Consensus 271 ~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 271 KQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HH-HHHHHHHHhcccceeeecccc
Confidence 34 333333345666666666554
No 178
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.49 E-value=0.018 Score=52.53 Aligned_cols=49 Identities=35% Similarity=0.634 Sum_probs=42.4
Q ss_pred ccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSL 59 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 59 (372)
+.|.|..++-++||+-+ .||.|.++-|++++.+ ..+||..+++++ ..++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs-~eel 50 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLS-IEEL 50 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCC-HHHe
Confidence 46999999999999865 9999999999999987 667999999888 4443
No 179
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.028 Score=55.17 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=56.2
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 165 (372)
.++...+++. ++.+|..++-.+.++-.. +.+...+.|.++.|.+++. +.++.+..+|+.+|..+...+.
T Consensus 124 ~Pl~~~l~d~--~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~--D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 124 DPLLKCLKDD--DPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLS--DSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHhccCC--ChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhc--CCCchHHHHHHHHHHHHHHhCC
Confidence 4577777765 788898888888777653 4667788999999999999 8999999999999999876644
No 180
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.43 E-value=0.69 Score=47.14 Aligned_cols=230 Identities=15% Similarity=0.109 Sum_probs=131.1
Q ss_pred HHHHhhcc---CCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc--CCC----hhHHHHHHHHHhcCCC
Q 017402 92 LISVLTSK---SSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH--SDG----FTLQEKALSLLLNLSL 162 (372)
Q Consensus 92 li~~L~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~----~~~~~~a~~~L~~l~~ 162 (372)
++.+|.+. +++.+.....++.|...++ -+.||+.+.+.|+++.|+..|... ... .++.+..+.++..+..
T Consensus 122 ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ 200 (802)
T PF13764_consen 122 LLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLS 200 (802)
T ss_pred HHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHH
Confidence 45555432 2223333344555555555 678999999999999999888631 222 5677777777766544
Q ss_pred Cccc---c--ccccccC-----C---hHHHHHHHhc----CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHh
Q 017402 163 DDDN---K--VGLVAEG-----A---VSRVVAALRF----GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL 225 (372)
Q Consensus 163 ~~~~---~--~~i~~~g-----~---i~~lv~~L~~----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll 225 (372)
+... . ....... . +..+++.+.+ .++.+....+++|-.|+..++.++...- .-+.+.+++=
T Consensus 201 ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv--~~F~p~l~f~ 278 (802)
T PF13764_consen 201 EANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV--EHFKPYLDFD 278 (802)
T ss_pred HHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH--HHHHHhcChh
Confidence 3111 1 1111111 2 5555555544 3678888899999999977755444322 2333333322
Q ss_pred hcCCc-hHHHHHHHHHHHhhcC----CC---chhHHHHhcCchHHHHHHHhhh--------------------HHHHHHH
Q 017402 226 QNGKL-IREKKEAATALYALTS----FP---ENRKRVVSCGAVPILMRLADAG--------------------LERAVEV 277 (372)
Q Consensus 226 ~~~~~-~~~~~~a~~aL~~L~~----~~---~~~~~i~~~g~v~~L~~ll~~~--------------------~e~a~~~ 277 (372)
+-+.+ ..--...+..++.++. +. .-|..+++.|++...++.|... ...++.+
T Consensus 279 ~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~l 358 (802)
T PF13764_consen 279 KFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRL 358 (802)
T ss_pred hcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHH
Confidence 11111 0111233455555443 22 2567888999999998888211 2357888
Q ss_pred HHHHhCCHhHHHHHHhccchHHHHHHHHhcC--ChhHHHhHHHHHHHHhcC
Q 017402 278 LSILVKCKEGREEMMRVSGCVGVFVKMLKTG--SSRAVQCSLFTLSCLCCC 326 (372)
Q Consensus 278 L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~ 326 (372)
|.-|+.+....+.+.. .+++ .+++.|... ...+-..|-.+|-.++..
T Consensus 359 L~GLa~gh~~tQ~~~~-~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 359 LRGLARGHEPTQLLIA-EQLL-PLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred HHHHHhcCHHHHHHHH-hhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 8999987665555555 5577 444555432 234445666666666653
No 181
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.41 E-value=0.0012 Score=59.04 Aligned_cols=45 Identities=29% Similarity=0.521 Sum_probs=38.8
Q ss_pred cccCCcccCCCceecCCchHhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402 10 KCPISLEIMSDPVILSSGHTFDRASIQRWLDSG-HRTCPITKLPLP 54 (372)
Q Consensus 10 ~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~ 54 (372)
.|.||-+-=+|-.+=+|||-.|-.|+..|.... ..+||.||....
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 599999988887777899999999999999654 678999998766
No 182
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.39 E-value=0.00062 Score=65.96 Aligned_cols=46 Identities=22% Similarity=0.508 Sum_probs=37.8
Q ss_pred CccccCCcccCCCcee---cCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVI---LSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~---~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.-.||+|..-+.|-.. .+|+|.||..|+..|..- ..+||.||..|.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhh
Confidence 3468899888777654 469999999999998874 678999999887
No 183
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.36 E-value=0.044 Score=40.20 Aligned_cols=69 Identities=20% Similarity=0.178 Sum_probs=56.6
Q ss_pred chHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHh--cChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRK--EGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 296 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
..+++++..+.+.+.++|..|+.+|.++++.. +.+++. ..+.+.|..++.+.+++||..|.-+-+.|++
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLKD 97 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcC
Confidence 37888999999999999999999999998763 334433 4588999999999999999999877777753
No 184
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.36 E-value=0.13 Score=50.83 Aligned_cols=237 Identities=15% Similarity=0.139 Sum_probs=152.5
Q ss_pred HHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHh-cCCCCccccccccccCChHHHHHHHhcCChHHH--HHHHHHHH
Q 017402 123 SRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLL-NLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCR--AIAATIIT 199 (372)
Q Consensus 123 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~--~~a~~~L~ 199 (372)
-+...++.|+...|+++.. ....+.+.....+|. .+....+ + ....++++...+.+. .... -.+..++.
T Consensus 496 ~~~~~Ik~~~~~aLlrl~~--~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d-~~~~en~E~L~alt 567 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLGQ--QQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHND-EKGLENFEALEALT 567 (748)
T ss_pred hcCccccccHHHHHHHHHH--HhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhh-HHHHHHHHHHHHhh
Confidence 4566678899999999998 677788888888887 2222211 1 123445555555332 2222 24778899
Q ss_pred Hhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHH-Hh-cCchHHHHHHHhhh---HH-
Q 017402 200 SLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRV-VS-CGAVPILMRLADAG---LE- 272 (372)
Q Consensus 200 ~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i-~~-~g~v~~L~~ll~~~---~e- 272 (372)
||+..+ ..+..|.. .-+++.+-+++...+. ..+..++..+.||...+..-... ++ ...++.....+... .+
T Consensus 568 nLas~s~s~r~~i~k-e~~~~~ie~~~~ee~~-~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 568 NLASISESDRQKILK-EKALGKIEELMTEENP-ALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred cccCcchhhHHHHHH-HhcchhhHHHhhcccH-HHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 998776 45666655 4455555555656665 88999999999999988755544 44 24455555555333 12
Q ss_pred HHHHHHHHHhCCHhHHHH-HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhccc
Q 017402 273 RAVEVLSILVKCKEGREE-MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDN 351 (372)
Q Consensus 273 ~a~~~L~~L~~~~~~~~~-i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~ 351 (372)
.+..++..+....++.-. +.+...+...++.++.+.+..++-..+....++...+.+....+.....++.+..+..-..
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 123333323332222221 3333447888899999999999988888888877666788888888888888888777766
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 017402 352 EKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 352 ~~v~~~a~~~L~~l~~~~ 369 (372)
...++.+...|...-+.+
T Consensus 726 a~~~~~~~~~l~~a~~~~ 743 (748)
T KOG4151|consen 726 APKREDAAPCLSAAEEYG 743 (748)
T ss_pred hhhhhhhhhHHHHHHHhh
Confidence 666777777776544433
No 185
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0017 Score=58.52 Aligned_cols=58 Identities=31% Similarity=0.634 Sum_probs=44.2
Q ss_pred CccccCCcccCCCc-----eecCCchHhhHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCccHHHH
Q 017402 8 DFKCPISLEIMSDP-----VILSSGHTFDRASIQRWLDSG-HRTCPITKLPLPDQPSLIPNHALR 66 (372)
Q Consensus 8 ~~~C~ic~~~~~~P-----v~~~cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~~~~~~~~n~~l~ 66 (372)
.-+||||++-+.-| |.+.|||-|-..||++|+.+. ...||.|...-. +..+.+-..++
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat-kr~i~~e~alR 67 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT-KRQIRPEYALR 67 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH-HHHHHHHHHHH
Confidence 35899999987766 467899999999999999532 347999988776 66666654443
No 186
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.35 E-value=0.2 Score=47.93 Aligned_cols=248 Identities=15% Similarity=0.111 Sum_probs=143.4
Q ss_pred CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhc-CCCCccccc-cccc------
Q 017402 101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN-LSLDDDNKV-GLVA------ 172 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~-l~~~~~~~~-~i~~------ 172 (372)
.|+..|.+|=..|.++..++ +. ..+..+++.|-+....+..+..|.-+|.| |...++.+. ...+
T Consensus 17 pD~n~rl~aE~ql~~l~~~d--F~------qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~ 88 (858)
T COG5215 17 PDPNARLRAEAQLLELQSGD--FE------QFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMR 88 (858)
T ss_pred CCCCccccHHHHHHHhcccc--HH------HHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCC
Confidence 36778888888888888754 22 23556677776434567788888888887 433333221 1110
Q ss_pred ----cCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 173 ----EGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 173 ----~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
..+=....+.|.+..+..-..|+.++..++..+ .+. .-.|.+..++...-++.+...+.+++.++.+.|..
T Consensus 89 ~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~----~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces 164 (858)
T COG5215 89 HESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNS----LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES 164 (858)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccc----cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhc
Confidence 111122334555666666677788888877544 111 11366666666666655557888999999999875
Q ss_pred CchhHHHH-hcCc-h-HHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHh---ccchHHHHHHHHhcCChhHHHhH
Q 017402 248 PENRKRVV-SCGA-V-PILMRLADAG-----LERAVEVLSILVKCKEGREEMMR---VSGCVGVFVKMLKTGSSRAVQCS 316 (372)
Q Consensus 248 ~~~~~~i~-~~g~-v-~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~---~~g~i~~L~~ll~~~~~~~~~~a 316 (372)
..- +.++ ..+. + ......+..+ +-.++.+|.+-+ ..-+..+.. .+-.+...++.-+..+..++..|
T Consensus 165 ~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl--~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aa 241 (858)
T COG5215 165 EAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL--MFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAA 241 (858)
T ss_pred cCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH--HHHHHhhcchhhhchhheeeehhccCCcHHHHHHH
Confidence 543 3333 2232 2 2223333333 222444444411 112222222 11234445566666777888888
Q ss_pred HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHH
Q 017402 317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQ 363 (372)
Q Consensus 317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~ 363 (372)
.++|..|-.-.-+.-+-.++.-.........++.+++|.-+|...-+
T Consensus 242 fgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWs 288 (858)
T COG5215 242 FGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWS 288 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 88888776554455555566656667777888888888888876553
No 187
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.32 E-value=0.16 Score=49.96 Aligned_cols=147 Identities=12% Similarity=0.115 Sum_probs=93.2
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHH---HHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc-cc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASR---RKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD-NK 167 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~-~~ 167 (372)
++.+|++. ++++|.+|+..+..++.-- .++ +.+...|.| |.+-|. ...+++.-..+.+|..+...-. .+
T Consensus 804 iL~rLnnk--sa~vRqqaadlis~la~Vl-ktc~ee~~m~~lGvv--LyEylg--eeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 804 ILWRLNNK--SAKVRQQAADLISSLAKVL-KTCGEEKLMGHLGVV--LYEYLG--EEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHhcCC--ChhHHHHHHHHHHHHHHHH-HhccHHHHHHHhhHH--HHHhcC--cccHHHHHHHHHHHHHHHHhccccc
Confidence 44456655 7899999999998888521 122 233444432 556676 6778876555555544432110 01
Q ss_pred ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402 168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 246 (372)
..=--.|.+|.|.-+|++....+++++...+..++..........+-..+=-.|+++|++.+- +++.+|...+..++.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK-~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKK-EIRRAAVNTFGYIAK 954 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHH
Confidence 100126889999999999999999999999999986553221111111234457777777665 888888888877664
No 188
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.68 Score=46.01 Aligned_cols=246 Identities=17% Similarity=0.163 Sum_probs=123.5
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc--
Q 017402 94 SVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV-- 171 (372)
Q Consensus 94 ~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-- 171 (372)
+.|.+. .+.+..+|++++..+...+. +.+.. .+..|--++. +....+|..|.++|..+++.........
T Consensus 252 s~l~~K--~emV~~EaArai~~l~~~~~---r~l~p--avs~Lq~fls--sp~~~lRfaAvRtLnkvAm~~P~~v~~cN~ 322 (865)
T KOG1078|consen 252 SCLRHK--SEMVIYEAARAIVSLPNTNS---RELAP--AVSVLQLFLS--SPKVALRFAAVRTLNKVAMKHPQAVTVCNL 322 (865)
T ss_pred HHHhch--hHHHHHHHHHHHhhccccCH---hhcch--HHHHHHHHhc--CcHHHHHHHHHHHHHHHHHhCCccccccch
Confidence 344443 67888999999999886543 22222 5666777777 7788899999999999886533222111
Q ss_pred -------cc---CChHHHHHHHhcCChHHHHHHHHHHHHhccc--ccchhhhccccchHHHHHHHhhcCCchHHHHHHHH
Q 017402 172 -------AE---GAVSRVVAALRFGSPDCRAIAATIITSLAVV--EVNKATIGDYPYAINALVSLLQNGKLIREKKEAAT 239 (372)
Q Consensus 172 -------~~---g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 239 (372)
.. =.-.++..+|+.++.........-+.++..+ ++++..++ ++|..|....-.. ..--..
T Consensus 323 elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvv---dai~sLc~~fp~k-----~~~~m~ 394 (865)
T KOG1078|consen 323 DLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVV---DAIRSLCLKFPRK-----HTVMMN 394 (865)
T ss_pred hHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeH---HHHHHHHhhccHH-----HHHHHH
Confidence 11 1334555566666544443333333333221 23332222 2344333322111 111111
Q ss_pred HHHhhcCCC---chhHHHHhcCchHHHHHHHhhh---HHHHHHHHHHHhCCHhHHH---HHHh---c--------cchHH
Q 017402 240 ALYALTSFP---ENRKRVVSCGAVPILMRLADAG---LERAVEVLSILVKCKEGRE---EMMR---V--------SGCVG 299 (372)
Q Consensus 240 aL~~L~~~~---~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~L~~L~~~~~~~~---~i~~---~--------~g~i~ 299 (372)
.|.++-..+ +-+.. .++.++.++... +|..+.-|+..-.+-+-.. .+.. . ...+.
T Consensus 395 FL~~~Lr~eGg~e~K~a-----ivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir 469 (865)
T KOG1078|consen 395 FLSNMLREEGGFEFKRA-----IVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIR 469 (865)
T ss_pred HHHHHHHhccCchHHHH-----HHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhH
Confidence 222221111 11111 223333333211 3333322222221111111 0000 0 11233
Q ss_pred HHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 300 VFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 300 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
.+...+-=.+..++-.|+.+|..+...++. ....+.-.|.+.+.+.++++|..|..+|+.+.
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 343433335667788888888887744322 23345666777788889999999999999987
No 189
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.31 E-value=0.02 Score=49.63 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcC-CCCccccccccccCChHHHHHH
Q 017402 104 ESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNL-SLDDDNKVGLVAEGAVSRVVAA 182 (372)
Q Consensus 104 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l-~~~~~~~~~i~~~g~i~~lv~~ 182 (372)
.....|++.|+-++--++..|..+.+...+..++++|.. ...+.++..++.+|..+ ..++.|...+.+.+|+..++.+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~-~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSP-SNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhcc-CCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 346678999999998899999999999999999999952 46788999999999774 4558888889999999999999
Q ss_pred HhcC--ChHHHHHHHHHHHHhcccc
Q 017402 183 LRFG--SPDCRAIAATIITSLAVVE 205 (372)
Q Consensus 183 L~~~--~~~~~~~a~~~L~~ls~~~ 205 (372)
+++. +.+++......|+-....+
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHccc
Confidence 9874 6788888887776554433
No 190
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.25 E-value=0.034 Score=46.30 Aligned_cols=119 Identities=11% Similarity=0.115 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHHHhcccccchhhhcc---------------ccchHHHHHHHhhc-----CCchHHHHHHHHHHHhhcC
Q 017402 187 SPDCRAIAATIITSLAVVEVNKATIGD---------------YPYAINALVSLLQN-----GKLIREKKEAATALYALTS 246 (372)
Q Consensus 187 ~~~~~~~a~~~L~~ls~~~~~~~~i~~---------------~~g~i~~Lv~ll~~-----~~~~~~~~~a~~aL~~L~~ 246 (372)
+......++.+|.|++..++....+.. ....+..|+..+.. .+...-....+.++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 334455677777777776655542211 12478888888876 1223677889999999999
Q ss_pred CCchhHHHHhc--Cc--hHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhcc--chHHHHHHHH
Q 017402 247 FPENRKRVVSC--GA--VPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVS--GCVGVFVKML 305 (372)
Q Consensus 247 ~~~~~~~i~~~--g~--v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~--g~i~~L~~ll 305 (372)
.+++|..+.+. +. +..|+....+. +.-++.+|.|+|...+....+.... +.++.|+--+
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 99999999955 34 55566555433 5669999999999999998888832 3344443333
No 191
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.24 E-value=0.26 Score=47.50 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=96.8
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcCh--HHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC---cc
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDS--ASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD---DD 165 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~---~~ 165 (372)
.++.+|++. .+++|.+|+.....++.--. .--+.+...|.| |.+-|. ...+++.-..+.++..+... +.
T Consensus 608 tiL~~L~~k--~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lg--e~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 608 TILKLLRSK--PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLG--EDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHhcCC--CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcC--cccHHHHHHHHHHHHHHhhhhcccc
Confidence 355677766 78999999988887774211 012333444432 445555 67788877777777665433 22
Q ss_pred ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
-+.. -.|.+|.|.-+|++....+..+....+..++.......-..+-..+--.|+++|++-+- +.+.+|...+.-++
T Consensus 682 mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nK-eiRR~A~~tfG~Is 758 (975)
T COG5181 682 MQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNK-EIRRNATETFGCIS 758 (975)
T ss_pred cCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhH-HHHHhhhhhhhhHH
Confidence 2222 26899999999999999999999999999887654322222211234467777777766 89999998887766
Q ss_pred C
Q 017402 246 S 246 (372)
Q Consensus 246 ~ 246 (372)
.
T Consensus 759 ~ 759 (975)
T COG5181 759 R 759 (975)
T ss_pred h
Confidence 4
No 192
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.24 E-value=0.82 Score=46.62 Aligned_cols=241 Identities=19% Similarity=0.147 Sum_probs=148.5
Q ss_pred HHHhhcCCHHHHHHHHhhc---CCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc----CC----hHHHHH
Q 017402 125 RKLTESGAVSAVLNCLKIH---SDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF----GS----PDCRAI 193 (372)
Q Consensus 125 ~~i~~~g~i~~L~~lL~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~----~~----~~~~~~ 193 (372)
..+.+.||+..|+++|.+. ....+.....+..|..++.-+.||..+.+.|+++.|+..|.. +. .++-+.
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 3455789999999999742 234567778888888888889999999999999999998852 23 455555
Q ss_pred HHHHHHHhccccc---chhhhc--c-------ccchHHHHHHHhhcCC---chHHHHHHHHHHHhhcCCCchhH-HHHhc
Q 017402 194 AATIITSLAVVEV---NKATIG--D-------YPYAINALVSLLQNGK---LIREKKEAATALYALTSFPENRK-RVVSC 257 (372)
Q Consensus 194 a~~~L~~ls~~~~---~~~~i~--~-------~~g~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L~~~~~~~~-~i~~~ 257 (372)
...++..+..... ...... . ...-+..|++.+.+.. .+.+....+++|-+|+..++... .+++
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~- 269 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE- 269 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-
Confidence 5555554432211 111000 0 1235777887777642 35888899999999998765443 3332
Q ss_pred CchHHHHHHH--hhh----HHHHHHHHH----HHhCC---HhHHHHHHhccchHHHHHHHHhcCChh-------------
Q 017402 258 GAVPILMRLA--DAG----LERAVEVLS----ILVKC---KEGREEMMRVSGCVGVFVKMLKTGSSR------------- 311 (372)
Q Consensus 258 g~v~~L~~ll--~~~----~e~a~~~L~----~L~~~---~~~~~~i~~~~g~i~~L~~ll~~~~~~------------- 311 (372)
-+.+.+++= +.. ....+.... ++-.+ ..-++.+++ .|.+...+.+|...-|.
T Consensus 270 -~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 270 -HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred -HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 112222211 111 111222233 33222 344667777 79999899988653321
Q ss_pred ---HHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc-cHHHHHHHHHHHHHHhcCC
Q 017402 312 ---AVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD-NEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 312 ---~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~ 369 (372)
....++..|.-+|.+.... +.++..++++.+-.|-+.. ...+=.-|..+|..|.++.
T Consensus 348 ~~psLp~iL~lL~GLa~gh~~t-Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHEPT-QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCHHH-HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 2356788888889875544 4446677775544444433 5566677777777777654
No 193
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.21 E-value=0.091 Score=52.50 Aligned_cols=139 Identities=17% Similarity=0.112 Sum_probs=103.8
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
+++++.... .|.+.|+=.--.|...++.+|+ ..+. .+..+.+=|. +.++.+|..|++++..+-..+-
T Consensus 58 ~dViK~~~t--rd~ElKrL~ylYl~~yak~~P~--~~lL---avNti~kDl~--d~N~~iR~~AlR~ls~l~~~el---- 124 (757)
T COG5096 58 PDVIKNVAT--RDVELKRLLYLYLERYAKLKPE--LALL---AVNTIQKDLQ--DPNEEIRGFALRTLSLLRVKEL---- 124 (757)
T ss_pred HHHHHHHHh--cCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHhhcc--CCCHHHHHHHHHHHHhcChHHH----
Confidence 556666653 3777777777777777776661 1111 3556666666 7899999999999998843221
Q ss_pred ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
-...++++.+++.++++.+|..|+-++.++=. -.+..+.+ .|.+..+..++.+.++ .+..+|+.+|..+...
T Consensus 125 --~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~-~g~~~~l~~l~~D~dP-~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 125 --LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHE-LGLIDILKELVADSDP-IVIANALASLAEIDPE 196 (757)
T ss_pred --HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhc-ccHHHHHHHHhhCCCc-hHHHHHHHHHHHhchh
Confidence 24468999999999999999999999999843 34555566 6899999999988887 9999999999988654
No 194
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.14 E-value=0.0075 Score=45.66 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=40.8
Q ss_pred CCccccCCcccCCCceec----CCchHhhHHHHHHHHhcC--CCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVIL----SSGHTFDRASIQRWLDSG--HRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~----~cgh~~c~~ci~~~~~~~--~~~CP~c~~~~~ 54 (372)
.-+.|-||.+...|...+ .||...|..|....|... .+.||+|++++.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 457899999999998876 499999999998888653 468999999887
No 195
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.8 Score=45.01 Aligned_cols=245 Identities=13% Similarity=0.092 Sum_probs=140.1
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKV 168 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~ 168 (372)
+++-.+|.++++..-+|..|+-.|..|-+.+|+. +..-+....++.+|. +.+..+...+...+..|+.. ++..
T Consensus 149 ~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~--D~~~gv~ta~~sLi~~lvk~~p~~y- 222 (938)
T KOG1077|consen 149 DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLD--DQHMGVVTAATSLIEALVKKNPESY- 222 (938)
T ss_pred hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhC--ccccceeeehHHHHHHHHHcCCHHH-
Confidence 3466788888777778888888888888766532 222356778888888 66666777777777666654 2221
Q ss_pred cccccCChHHHHHHHh----c-------------CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc-
Q 017402 169 GLVAEGAVSRVVAALR----F-------------GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL- 230 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~----~-------------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~- 230 (372)
.+.++.-+.-|+ . +.+=.....+++|.++-..++.-....- ..+++.+++..++...
T Consensus 223 ----k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l-~evl~~iLnk~~~~~~~ 297 (938)
T KOG1077|consen 223 ----KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL-NEVLERILNKAQEPPKS 297 (938)
T ss_pred ----hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH-HHHHHHHHhccccCccc
Confidence 122233222221 1 1233455666666666333322222111 2345555555442111
Q ss_pred h-----HHHHHHHHHHHhhcC-CCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHH
Q 017402 231 I-----REKKEAATALYALTS-FPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGV 300 (372)
Q Consensus 231 ~-----~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~ 300 (372)
. .++...+.-..+|+. .++....+.+ ++..|-++|.+. +=.++.-+..|+..+...+.+..+ .+.
T Consensus 298 k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~ 372 (938)
T KOG1077|consen 298 KKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QDT 372 (938)
T ss_pred cchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HHH
Confidence 0 112222222223443 2333344433 455566666432 445777788888887777777664 778
Q ss_pred HHHHHh-cCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHH
Q 017402 301 FVKMLK-TGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRN 357 (372)
Q Consensus 301 L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~ 357 (372)
++..|+ ..+..+++.|+..|..+|. .++.+.+ +.-|++.+.+.+..+|+.
T Consensus 373 Ii~sLkterDvSirrravDLLY~mcD--~~Nak~I-----V~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 373 IINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQI-----VAELLQYLETADYSIREE 423 (938)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhc--hhhHHHH-----HHHHHHHHhhcchHHHHH
Confidence 888887 5788999999999999995 4555554 344566666655555543
No 196
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.11 E-value=0.36 Score=44.09 Aligned_cols=197 Identities=14% Similarity=0.111 Sum_probs=139.8
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchh-----hhccc-cchHHHHHHHhhcCCchHHHHHHHHHH
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKA-----TIGDY-PYAINALVSLLQNGKLIREKKEAATAL 241 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~-----~i~~~-~g~i~~Lv~ll~~~~~~~~~~~a~~aL 241 (372)
.+.+.|.+..|+..|..-+.+.+..++.+..++-... ..+. .+... ..++..|+.--. .+++.-.+...|
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHH
Confidence 3556788999999999999999999999998887654 2222 33332 345555554433 336788888899
Q ss_pred HhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHH-HhCCHhHHHHHHh--ccchHHHHHHHHhcCChhHHH
Q 017402 242 YALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSI-LVKCKEGREEMMR--VSGCVGVFVKMLKTGSSRAVQ 314 (372)
Q Consensus 242 ~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~-L~~~~~~~~~i~~--~~g~i~~L~~ll~~~~~~~~~ 314 (372)
+....++.....+.....+..+.+.+..+ .-.|..++.. |..+..--..+.. .+..+..+..++.+++-..++
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 99998888888888888888888888665 3445555554 4556665555555 234677888888888888999
Q ss_pred hHHHHHHHHhcCCHHHHHHHHh----cChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 315 CSLFTLSCLCCCSQEICGDSRK----EGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 315 ~a~~~L~~l~~~~~~~~~~~~~----~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
.++..|..+-.. +.+...|.+ ..-+..++.++++.+..+|-.|=.+.+.+--++
T Consensus 228 qslkLL~ellld-r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 228 QSLKLLGELLLD-RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHS-GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred hhHHHHHHHHHc-hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 999999999876 655555433 347999999999999999999999988876554
No 197
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.05 E-value=0.61 Score=42.24 Aligned_cols=186 Identities=23% Similarity=0.246 Sum_probs=108.3
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhcc-ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC---Cchh
Q 017402 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGD-YPYAINALVSLLQNGKLIREKKEAATALYALTSF---PENR 251 (372)
Q Consensus 176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~---~~~~ 251 (372)
+...+..+.......|+.+...+.++-.....-..+.. ....++.+.+.++.+.. +-+..|+.++.-++.. .+..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccH
Confidence 44455555566788999999998888655543334422 23578888888888776 5566777777777654 2344
Q ss_pred HHHHhcCchHHHHHHHhhh------HHHHHHHHHHHhC---C-HhHHHHHHhccchHHHHHH--HHhc-C---------C
Q 017402 252 KRVVSCGAVPILMRLADAG------LERAVEVLSILVK---C-KEGREEMMRVSGCVGVFVK--MLKT-G---------S 309 (372)
Q Consensus 252 ~~i~~~g~v~~L~~ll~~~------~e~a~~~L~~L~~---~-~~~~~~i~~~~g~i~~L~~--ll~~-~---------~ 309 (372)
..+.+ ...|.|...+..+ +..++.+|+.++. . .+.....++ .+..+.. ..+. + +
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccccCCCc
Confidence 45554 3677788887433 2334444444433 2 122221222 2332222 1221 1 2
Q ss_pred hhHHHhHHHHHHHHhcCCHH-HHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 310 SRAVQCSLFTLSCLCCCSQE-ICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 310 ~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
+.+.-.|+.+-.-|...-+. .....++ ..++.|..+|++++.+||.+|-..|..|-+
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34555555444444433233 2223333 369999999999999999999999987643
No 198
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.04 E-value=0.84 Score=43.84 Aligned_cols=270 Identities=12% Similarity=0.066 Sum_probs=159.2
Q ss_pred chhHHHHhhccCCC---hHHHHHHHHHHHHHhhcChHHHHHHhhcCC-HHHHHH-HHhhcCCChhHHHHHHHHHhc-CCC
Q 017402 89 PQTLISVLTSKSSP---LESKLESLTQLTKLSKRDSASRRKLTESGA-VSAVLN-CLKIHSDGFTLQEKALSLLLN-LSL 162 (372)
Q Consensus 89 ~~~li~~L~~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~-i~~L~~-lL~~~~~~~~~~~~a~~~L~~-l~~ 162 (372)
-|.+...+-+..++ ...+.+++..+.+.|.. +.-...+...+. +-.++. -++. ..+..++..|+.+|.+ +-.
T Consensus 131 wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~-et~~avRLaaL~aL~dsl~f 208 (858)
T COG5215 131 WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKN-ETTSAVRLAALKALMDSLMF 208 (858)
T ss_pred chHHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhccc-CchHHHHHHHHHHHHHHHHH
Confidence 36777777665433 34678899999999964 222334434433 223332 3332 3567789999999987 332
Q ss_pred Cccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402 163 DDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATA 240 (372)
Q Consensus 163 ~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 240 (372)
-..+-..=.+ .=.++..++.-..++.+++..+-+-|..+-... ..-..+.+ .-........++++++ ++...|...
T Consensus 209 v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd-~va~qavEf 286 (858)
T COG5215 209 VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQND-EVAIQAVEF 286 (858)
T ss_pred HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcch-HHHHHHHHH
Confidence 2221111011 113445566666778899988888887775443 33333444 2344444567788888 888888876
Q ss_pred HHhhcCCC-chhHHHH----------------hcCchHHHHHHHhhh--------------HHHHHHHHHHHhCCHhHHH
Q 017402 241 LYALTSFP-ENRKRVV----------------SCGAVPILMRLADAG--------------LERAVEVLSILVKCKEGRE 289 (372)
Q Consensus 241 L~~L~~~~-~~~~~i~----------------~~g~v~~L~~ll~~~--------------~e~a~~~L~~L~~~~~~~~ 289 (372)
-+.+|..+ ++-..+- -+.++|.|+.+|... ...++...+.++.+
T Consensus 287 WsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd----- 361 (858)
T COG5215 287 WSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD----- 361 (858)
T ss_pred HHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-----
Confidence 65555422 1111111 224789999999431 12244444444443
Q ss_pred HHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 290 EMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 290 ~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
.|++ + .+.-+-.-+++.+-..++.|+.++..+-.+..+.+..-+-...+|.+.....+..--++..++|++-.+.++.
T Consensus 362 ~i~~-p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v 439 (858)
T COG5215 362 KIMR-P-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV 439 (858)
T ss_pred HhHH-H-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence 2222 1 2222223344566677899999999987663344443344557888888888888889999999988777654
No 199
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.01 E-value=0.72 Score=43.31 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=116.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHHhcCCCCc----cccccccccCChHHHHHHHhcC-------ChHHHHHHHHHHHHhccc
Q 017402 136 VLNCLKIHSDGFTLQEKALSLLLNLSLDD----DNKVGLVAEGAVSRVVAALRFG-------SPDCRAIAATIITSLAVV 204 (372)
Q Consensus 136 L~~lL~~~~~~~~~~~~a~~~L~~l~~~~----~~~~~i~~~g~i~~lv~~L~~~-------~~~~~~~a~~~L~~ls~~ 204 (372)
+..+++ ..+.+-+-.|+-.+..+..++ -+++.+.++=|.+.+=++|.+. +.-.+..+..+|.-++..
T Consensus 16 ~~~L~~--~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 16 CLKLLK--GKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred HHHHhc--ccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 444555 455666677777777776664 3577788888899999999652 233456677888888877
Q ss_pred ccc--hhhhccccchHHHHHHHhhcCCchH------HHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh--hh---H
Q 017402 205 EVN--KATIGDYPYAINALVSLLQNGKLIR------EKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD--AG---L 271 (372)
Q Consensus 205 ~~~--~~~i~~~~g~i~~Lv~ll~~~~~~~------~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~--~~---~ 271 (372)
++. ...+. ..||.|++.+....+++ ....+..+|..++..+.+...++..|+++.+-++-. ++ .
T Consensus 94 pElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 94 PELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred hhhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhH
Confidence 653 33343 46999999998655433 788999999999999999999999999999987652 22 3
Q ss_pred HHHHHHHHHHhC----CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402 272 ERAVEVLSILVK----CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323 (372)
Q Consensus 272 e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 323 (372)
+.++.++--+.. .++.-..+.. .+..+.+=+.......+-..+.+|..+
T Consensus 171 alal~Vlll~~~~~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HHHHHHHHHHHHhcccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444333332 2222233333 233443333333445566677777644
No 200
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.00 E-value=0.31 Score=46.39 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=111.6
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCC--ChhHHHHHHHHHhcCCCCcccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSD--GFTLQEKALSLLLNLSLDDDNK 167 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~--~~~~~~~a~~~L~~l~~~~~~~ 167 (372)
-.+.+.+.++ +...+..|++.|..++. ++.+...++...++..|..++.+... ..++....++++..+-.+.-..
T Consensus 86 ~~i~e~l~~~--~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 86 KRIMEILTEG--NNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHhCC--CcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 3578888877 77778889999999998 67799999999999999999995333 4567788888887776654433
Q ss_pred ccccccCChHHHHHHHhc--CChHHHHHHHHHHHHhccccc-chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 168 VGLVAEGAVSRVVAALRF--GSPDCRAIAATIITSLAVVEV-NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
-..+...+|..++.+.+- -+..+-..|...|.++...+. ....+.+ .--+..|+..++..+. .+...|...|-.+
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~e-ev~i~~li~hlq~~n~-~i~~~aial~nal 240 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAE-EVPIETLIRHLQVSNQ-RIQTCAIALLNAL 240 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHh-cCcHHHHHHHHHhcch-HHHHHHHHHHHHH
Confidence 344455566666666532 366777888899988887775 4455555 5678999999988777 6777766666555
Q ss_pred cC
Q 017402 245 TS 246 (372)
Q Consensus 245 ~~ 246 (372)
..
T Consensus 241 ~~ 242 (713)
T KOG2999|consen 241 FR 242 (713)
T ss_pred Hh
Confidence 43
No 201
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.0043 Score=55.99 Aligned_cols=46 Identities=28% Similarity=0.600 Sum_probs=38.4
Q ss_pred CCCccccCCcccCC---CceecCCchHhhHHHHHHHHhcCC--CCCCCCCC
Q 017402 6 PDDFKCPISLEIMS---DPVILSSGHTFDRASIQRWLDSGH--RTCPITKL 51 (372)
Q Consensus 6 ~~~~~C~ic~~~~~---~Pv~~~cgh~~c~~ci~~~~~~~~--~~CP~c~~ 51 (372)
..-|.|||-.+--. .|+.+.|||..++..+.+....+. +.||.|-.
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 35689999998654 578999999999999999887776 78999954
No 202
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.92 E-value=0.59 Score=47.43 Aligned_cols=215 Identities=15% Similarity=0.145 Sum_probs=124.8
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccc
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL 170 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 170 (372)
.++.-+.++.++...|.-|+-.++.+-...+ .-...+.-..+++.+. +.+.+++..|..+|++++.+.-
T Consensus 821 kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iieaf~--sp~edvksAAs~ALGsl~vgnl----- 889 (1233)
T KOG1824|consen 821 KLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIEAFN--SPSEDVKSAASYALGSLAVGNL----- 889 (1233)
T ss_pred HHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHHHcC--CChHHHHHHHHHHhhhhhcCch-----
Confidence 3565566554555667777777777665432 1112233345667777 7889999999999999986532
Q ss_pred cccCChHHHHHHHhcC--ChHHHHHHH-HHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 171 VAEGAVSRVVAALRFG--SPDCRAIAA-TIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 171 ~~~g~i~~lv~~L~~~--~~~~~~~a~-~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
...+|.++....++ .......+. .+|..-+. +..+..+ ..+...|.+-.....+ .++.-.+.+|+.|+..
T Consensus 890 --~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~sv-d~~~~~v---~~IW~lL~k~cE~~ee-gtR~vvAECLGkL~l~ 962 (1233)
T KOG1824|consen 890 --PKYLPFILEQIESQPKRQYLLLHSLKEVIVSASV-DGLKPYV---EKIWALLFKHCECAEE-GTRNVVAECLGKLVLI 962 (1233)
T ss_pred --HhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhcc-chhhhhH---HHHHHHHHHhcccchh-hhHHHHHHHhhhHHhC
Confidence 23567777777654 222333332 22222221 1111111 1344444454444445 6788888899888875
Q ss_pred CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHH-HhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHH
Q 017402 248 PENRKRVVSCGAVPILMRLADAG----LERAVEVLSI-LVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSC 322 (372)
Q Consensus 248 ~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~-L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~ 322 (372)
+.. ..+|.|-..+.++ +-.++.+... ++..+..-+.+.. ..+..+..++++++..+++.|+.++-.
T Consensus 963 epe-------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk--~~ig~fl~~~~dpDl~VrrvaLvv~nS 1033 (1233)
T KOG1824|consen 963 EPE-------SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK--QQIGDFLKLLRDPDLEVRRVALVVLNS 1033 (1233)
T ss_pred ChH-------HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH--HHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 432 1445555555444 2223333332 2333333344444 368888899999999999999999999
Q ss_pred HhcCCHHHHH
Q 017402 323 LCCCSQEICG 332 (372)
Q Consensus 323 l~~~~~~~~~ 332 (372)
.+++.|..-.
T Consensus 1034 aahNKpslIr 1043 (1233)
T KOG1824|consen 1034 AAHNKPSLIR 1043 (1233)
T ss_pred HHccCHhHHH
Confidence 8877664433
No 203
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.0047 Score=51.74 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=33.0
Q ss_pred CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHh
Q 017402 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD 40 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~ 40 (372)
.+.+..+|.+|++.++|||+.+-||.|||.||.+++.
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3556678999999999999999999999999999874
No 204
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.0048 Score=54.97 Aligned_cols=46 Identities=24% Similarity=0.430 Sum_probs=39.1
Q ss_pred CccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.-.|=||+.--+|-++++|.|. .|..|-+... .....||.||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchH
Confidence 4679999999999999999995 6999987655 33667999999887
No 205
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.79 E-value=0.0037 Score=39.61 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=36.4
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..+..|-.|...-...++++|||..|+.|..-+- -.-||.|..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~ 50 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPGER---YNGCPFCGTPFE 50 (55)
T ss_pred ccceeEEEccccccccccccccceeeccccChhh---ccCCCCCCCccc
Confidence 3456778888888888999999999998875433 346999999887
No 206
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.74 E-value=0.008 Score=38.01 Aligned_cols=45 Identities=29% Similarity=0.583 Sum_probs=22.9
Q ss_pred CccccCCcccCCCcee-cCCchH--hhHHH-HHHHHhcCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVI-LSSGHT--FDRAS-IQRWLDSGHRTCPITKLP 52 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~-~~cgh~--~c~~c-i~~~~~~~~~~CP~c~~~ 52 (372)
.+.||++...+..|+- ..|.|. |+..- ++.....+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3689999999999996 569996 44322 222223345689999863
No 207
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.59 Score=46.52 Aligned_cols=124 Identities=11% Similarity=0.163 Sum_probs=64.3
Q ss_pred HHHhhcCCchHHHHHHHHHHHhhcCCCc---hhHHHHhcCchHHHHHHHhhh--HHHHHHHHHHHhCCHhHHHHHHhccc
Q 017402 222 VSLLQNGKLIREKKEAATALYALTSFPE---NRKRVVSCGAVPILMRLADAG--LERAVEVLSILVKCKEGREEMMRVSG 296 (372)
Q Consensus 222 v~ll~~~~~~~~~~~a~~aL~~L~~~~~---~~~~i~~~g~v~~L~~ll~~~--~e~a~~~L~~L~~~~~~~~~i~~~~g 296 (372)
+++|..++. +..+.-.-.|..++.+.+ |.-..+=-..|..++.+-..+ ++.|+.+|+.+..+.+..-..+.
T Consensus 258 LriLGq~d~-daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYva--- 333 (866)
T KOG1062|consen 258 LRILGQNDA-DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVA--- 333 (866)
T ss_pred HHHhcCCCc-cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeee---
Confidence 344444444 566666666767666443 222222223566666665443 77888888887776555433332
Q ss_pred hHHHHH------------------HHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHH
Q 017402 297 CVGVFV------------------KMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRN 357 (372)
Q Consensus 297 ~i~~L~------------------~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~ 357 (372)
+..|. +.+++.+..+++.|+..+..|... ...+ ..++.|+.++...+++.|..
T Consensus 334 -Ln~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~------~mv~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 334 -LNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVR------VMVKELLEFLESSDEDFKAD 404 (866)
T ss_pred -hhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHH------HHHHHHHHHHHhccHHHHHH
Confidence 33444 444444455555555554444432 1111 14556666676666666543
No 208
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=95.70 E-value=0.0041 Score=51.80 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=37.3
Q ss_pred CccccCCcc-cCCCce--e--cC-CchHhhHHHHHHHHhcCCCCCC--CCCCCCC
Q 017402 8 DFKCPISLE-IMSDPV--I--LS-SGHTFDRASIQRWLDSGHRTCP--ITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~-~~~~Pv--~--~~-cgh~~c~~ci~~~~~~~~~~CP--~c~~~~~ 54 (372)
+-.||+|.. .+-+|= . -| |=|..|.+|+.+.|+.|+..|| -|++-+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 458999994 566662 1 24 9999999999999999999999 5766554
No 209
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.011 Score=42.42 Aligned_cols=27 Identities=30% Similarity=0.737 Sum_probs=23.8
Q ss_pred CCchHhhHHHHHHHHhcCCCCCCCCCCC
Q 017402 25 SSGHTFDRASIQRWLDSGHRTCPITKLP 52 (372)
Q Consensus 25 ~cgh~~c~~ci~~~~~~~~~~CP~c~~~ 52 (372)
.|.|.|...||.+|+.+ +..||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 59999999999999987 6679999764
No 210
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.016 Score=58.60 Aligned_cols=71 Identities=37% Similarity=0.587 Sum_probs=64.8
Q ss_pred CCCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402 4 QFPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP 76 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~ 76 (372)
+++++|.=|+...+|+|||.+| .|++.||.=|.+++.. ..+-|.||.+++ ...+.||..++..+..|.+..
T Consensus 866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt-~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLT-EDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCc-hhhcCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998 9999999999998875 667899999999 999999999999999998764
No 211
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.0035 Score=59.63 Aligned_cols=42 Identities=29% Similarity=0.544 Sum_probs=34.2
Q ss_pred CCCCCCccccCCcccC----CCceecCCchHhhHHHHHHHHhcCCCCCC
Q 017402 3 TQFPDDFKCPISLEIM----SDPVILSSGHTFDRASIQRWLDSGHRTCP 47 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~----~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP 47 (372)
..|.+-+.|+||...| ..||.+-|||+.|+.|.+.... .+||
T Consensus 6 ~~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 6 LKWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred hhhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 3466788999998765 4899999999999999987553 3688
No 212
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=1.6 Score=42.97 Aligned_cols=242 Identities=15% Similarity=0.122 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHh
Q 017402 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALR 184 (372)
Q Consensus 106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~ 184 (372)
.-=|+..+.|+-. .++++.+.. -| -++|.+.+..+-++..|+-+|..|-.. ++. +-..+..+.++.+|.
T Consensus 128 v~LAL~~I~niG~--re~~ea~~~--DI---~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~ 197 (938)
T KOG1077|consen 128 VCLALHCIANIGS--REMAEAFAD--DI---PKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLD 197 (938)
T ss_pred HHHHHHHHHhhcc--HhHHHHhhh--hh---HHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhC
Confidence 3345555555443 234444422 23 366774444455676666666665444 332 223578999999998
Q ss_pred cCChHHHHHHHHHHHHhccccc--chhhhccccchHHHHHHHhhcCCc------------hHHHHHHHHHHHhhcCC--C
Q 017402 185 FGSPDCRAIAATIITSLAVVEV--NKATIGDYPYAINALVSLLQNGKL------------IREKKEAATALYALTSF--P 248 (372)
Q Consensus 185 ~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~------------~~~~~~a~~aL~~L~~~--~ 248 (372)
+.+..+...+...+..++...+ ++..+. -++..|......... +=+....+++|.+.-.. +
T Consensus 198 D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~---~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~ 274 (938)
T KOG1077|consen 198 DQHMGVVTAATSLIEALVKKNPESYKTCLP---LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDP 274 (938)
T ss_pred ccccceeeehHHHHHHHHHcCCHHHhhhHH---HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCc
Confidence 8888888888888888876542 333332 244444444332211 23555666666666332 2
Q ss_pred chhHHHHhcCchHHHHHHHhhh----------HHH-HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHH
Q 017402 249 ENRKRVVSCGAVPILMRLADAG----------LER-AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSL 317 (372)
Q Consensus 249 ~~~~~i~~~g~v~~L~~ll~~~----------~e~-a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~ 317 (372)
.+|..+.+ ....++...+.+ ..+ .+.-.-+|+.+-+.-..+.. .++..|..++.+....+|-.|+
T Consensus 275 ~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaL 350 (938)
T KOG1077|consen 275 STRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLAL 350 (938)
T ss_pred hHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhH
Confidence 34544443 334444443321 111 22222234433333333333 2788999999888888899999
Q ss_pred HHHHHHhcCCHHHHHHHHhcChhHHHHHHhh-cccHHHHHHHHHHHHHHhc
Q 017402 318 FTLSCLCCCSQEICGDSRKEGVLDICMGLLE-DDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 318 ~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~ 367 (372)
..+..+|.. +.....+... .+.++..++ ..+..+|++|..+|=.|-+
T Consensus 351 Esm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD 398 (938)
T KOG1077|consen 351 ESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD 398 (938)
T ss_pred HHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 888888865 3333444444 777888888 5578889999988865543
No 213
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.53 E-value=0.66 Score=38.29 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=71.0
Q ss_pred ChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHh
Q 017402 146 GFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL 225 (372)
Q Consensus 146 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll 225 (372)
++.++..++.++..|+..-.+-. ...++.+...|+++++.+|..|...|.+|...+-.|.. ...+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence 46788888888888875533211 45688899999999999999999999999765432222 23447888888
Q ss_pred hcCCchHHHHHHHHHHHhhcCC
Q 017402 226 QNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 226 ~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
.++++ +++..|..++..+...
T Consensus 73 ~D~~~-~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENP-EIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCH-HHHHHHHHHHHHHHHh
Confidence 77777 9999999999998875
No 214
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.49 E-value=0.1 Score=35.83 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHh
Q 017402 234 KKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMR 293 (372)
Q Consensus 234 ~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~ 293 (372)
++.|++++.++++.+.+...+.+.++++.++++.... +-.|..+|.-++...++.+.+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6789999999999999998888889999999999654 67899999999999999988776
No 215
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.45 E-value=0.24 Score=45.25 Aligned_cols=183 Identities=11% Similarity=0.116 Sum_probs=134.1
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhc-CCCCccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN-LSLDDDNKV 168 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~-l~~~~~~~~ 168 (372)
|+++..|-++-++++.-..+...|+...+ .+...+.+.....+..+++... ..+-++...|..++.. |..+...-.
T Consensus 124 peil~~L~~gy~~~dial~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~--~~~Fdiasdaf~t~~~llt~hk~~~a 200 (335)
T PF08569_consen 124 PEILDILLRGYENPDIALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQ--LPNFDIASDAFSTFKELLTRHKKLVA 200 (335)
T ss_dssp THHHHHHHHGGGSTTTHHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTT--SSSHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhcCccccchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhc--CCccHhHHHHHHHHHHHHhccHHHHH
Confidence 67888888877788988889999999887 5667777778888888888888 7888999999999988 445444333
Q ss_pred ccccc---CChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhh---hccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402 169 GLVAE---GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKAT---IGDYPYAINALVSLLQNGKLIREKKEAATALY 242 (372)
Q Consensus 169 ~i~~~---g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~---i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 242 (372)
.+... ..+...-.+|.+++.-++.++...|+.+-.+..|... .+....-+..++.+|++.+. .++-+|..+..
T Consensus 201 ~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk-~Iq~eAFhvFK 279 (335)
T PF08569_consen 201 EFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSK-NIQFEAFHVFK 279 (335)
T ss_dssp HHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-H-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcch-hhhHHHHHHHH
Confidence 33332 3566778888999999999999999999888766442 33436789999999999877 89999999887
Q ss_pred hhcCCCchhHHHHhcCchHHHHHHHhhhHHHHHHHHHHHhCCH
Q 017402 243 ALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCK 285 (372)
Q Consensus 243 ~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~a~~~L~~L~~~~ 285 (372)
-...++.- -+++.++|...+++.+..|.++....
T Consensus 280 vFVANp~K---------~~~I~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 280 VFVANPNK---------PPPIVDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHH-SS----------BHHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHhCCCC---------ChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 66655532 23455555555677777777666654
No 216
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.45 E-value=0.038 Score=40.55 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc--cCChHHHHHHH
Q 017402 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA--EGAVSRVVAAL 183 (372)
Q Consensus 106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~lv~~L 183 (372)
|..++..|...+..-+..-.... .-++++++..+. +.+..++..|+.+|.|++..-. ..+.. ...++.|.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~--D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFD--DQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLS 77 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 56778888877765443321111 247889999998 8999999999999999986532 22322 56778888888
Q ss_pred hcCChHHHHHHHHHHHHh
Q 017402 184 RFGSPDCRAIAATIITSL 201 (372)
Q Consensus 184 ~~~~~~~~~~a~~~L~~l 201 (372)
.+.++.++..| ..|-++
T Consensus 78 ~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 78 ADPDENVRSAA-ELLDRL 94 (97)
T ss_pred cCCchhHHHHH-HHHHHH
Confidence 88888877655 444443
No 217
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.33 E-value=0.084 Score=43.94 Aligned_cols=107 Identities=16% Similarity=0.213 Sum_probs=75.2
Q ss_pred chHHHHHHHhhcCCchHHHHHHHHHHHh-hcCCC-chhHHHHhcCchHHHHHHHhhh-------------HHHHHHHHHH
Q 017402 216 YAINALVSLLQNGKLIREKKEAATALYA-LTSFP-ENRKRVVSCGAVPILMRLADAG-------------LERAVEVLSI 280 (372)
Q Consensus 216 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~-L~~~~-~~~~~i~~~g~v~~L~~ll~~~-------------~e~a~~~L~~ 280 (372)
.-...+++.+++... .. ..+.-|.- |-..+ .=...|++.||+..|+..|..- ...++..+..
T Consensus 66 ~~p~~~i~~L~~~~~-~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPS-TS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp HHHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCc-cH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 456666777766544 11 22222221 22222 2356788899999999988321 2348889999
Q ss_pred HhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhc
Q 017402 281 LVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC 325 (372)
Q Consensus 281 L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 325 (372)
+.....|...+..+.+++..|+..+.+.+..++..++.+|..+|.
T Consensus 143 l~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 143 LMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALCL 187 (187)
T ss_dssp HTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHHT
T ss_pred HHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999883
No 218
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.74 Score=47.34 Aligned_cols=246 Identities=15% Similarity=0.153 Sum_probs=149.2
Q ss_pred HHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCC---
Q 017402 111 TQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGS--- 187 (372)
Q Consensus 111 ~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~--- 187 (372)
..|..+.+.+.+|...+.++.|+..++.++- +.+.+...++++..|-..+..+. .+..+-.+|..|+++-
T Consensus 664 DcLisllKnnteNqklFreanGvklilpfli----ndehRSslLrivscLitvdpkqv---hhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLI----NDEHRSSLLRIVSCLITVDPKQV---HHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeee----chHHHHHHHHHHHHHhccCcccc---cHHHHHHHHHHHHhcceec
Confidence 3455666778889999999999999888885 23556666777766554433322 3455677888887741
Q ss_pred ---------hHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhc---------CCchHHHHHHHHHHH-----h
Q 017402 188 ---------PDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQN---------GKLIREKKEAATALY-----A 243 (372)
Q Consensus 188 ---------~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~---------~~~~~~~~~a~~aL~-----~ 243 (372)
...+....++++..-..+ ..+..+++ .+++..|..+|.. ..+.-+...-...|. .
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFge-atGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTla 815 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE-ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLA 815 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhc-cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHH
Confidence 233445567777765333 45666777 6777777766642 111111222222222 2
Q ss_pred hcCCCchhHHHHhcCchHHHHHHHhhh-----------------------------HHH-HHHHHHHHhC----------
Q 017402 244 LTSFPENRKRVVSCGAVPILMRLADAG-----------------------------LER-AVEVLSILVK---------- 283 (372)
Q Consensus 244 L~~~~~~~~~i~~~g~v~~L~~ll~~~-----------------------------~e~-a~~~L~~L~~---------- 283 (372)
++.++.|+.++-..=.-+.+..+|... .|. |+.-+-.+-.
T Consensus 816 vcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsG 895 (2799)
T KOG1788|consen 816 VCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSG 895 (2799)
T ss_pred HhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCC
Confidence 344556665543211112222222110 111 1111111111
Q ss_pred -CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhh---cccHHHHHHHH
Q 017402 284 -CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE---DDNEKVRRNAN 359 (372)
Q Consensus 284 -~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~---~~~~~v~~~a~ 359 (372)
....++.|.. .|++..|.+.+...+++.+-.-+..+..++..++.++...-..|+++.|++++. +++...-.+|-
T Consensus 896 qfnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshal 974 (2799)
T KOG1788|consen 896 QFNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHAL 974 (2799)
T ss_pred CcCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccH
Confidence 0123445666 789999999998889999999999999999999999888889999999999875 35555556666
Q ss_pred HHHHHH
Q 017402 360 NLIQTL 365 (372)
Q Consensus 360 ~~L~~l 365 (372)
+++..|
T Consensus 975 kIvemL 980 (2799)
T KOG1788|consen 975 KIVEML 980 (2799)
T ss_pred HHHHHH
Confidence 666554
No 219
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.29 E-value=0.94 Score=41.04 Aligned_cols=174 Identities=13% Similarity=0.128 Sum_probs=97.0
Q ss_pred CCChhHHHHHHHHHhcCCCCcccccccc--ccCChHHHHHHHhcCChHHHHHHHHHHHHhccc---ccchhhhccccchH
Q 017402 144 SDGFTLQEKALSLLLNLSLDDDNKVGLV--AEGAVSRVVAALRFGSPDCRAIAATIITSLAVV---EVNKATIGDYPYAI 218 (372)
Q Consensus 144 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~--~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~---~~~~~~i~~~~g~i 218 (372)
+.....|+.++..|.++....-....+. ..-.++.+.+.++.+..+-+..|+.++.-++.. .+....+.. ...
T Consensus 54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~--~~~ 131 (309)
T PF05004_consen 54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE--ELK 131 (309)
T ss_pred hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH--HHH
Confidence 4556677777777766543322112121 134677888888888777777788877777655 233444444 588
Q ss_pred HHHHHHhhcCCc-hHHHHHHHHHHHhhcC---CC-chhHHHHhcCchHHHHH--HHhhh--------------HHHH---
Q 017402 219 NALVSLLQNGKL-IREKKEAATALYALTS---FP-ENRKRVVSCGAVPILMR--LADAG--------------LERA--- 274 (372)
Q Consensus 219 ~~Lv~ll~~~~~-~~~~~~a~~aL~~L~~---~~-~~~~~i~~~g~v~~L~~--ll~~~--------------~e~a--- 274 (372)
|.|...+.+... ..++..++.+|.-++. .+ +......+ .+..+.. .++.+ .-.|
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 899999888754 3555666666665543 22 22221111 1221111 11110 1112
Q ss_pred HHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402 275 VEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324 (372)
Q Consensus 275 ~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 324 (372)
...|..+.....-. .... ..++.|+.+|.+.+..+|..|-.+|.-|.
T Consensus 210 W~lLlt~~~~~~~~-~~~~--~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 210 WALLLTTLPDSKLE-DLLE--EALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHhcCCHHHHH-HHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 23333222221122 3333 47999999999999999998888877663
No 220
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.011 Score=52.31 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=40.3
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.++-.||||.----..|..||+|.-|+.||.+++.. ...|-.|+..+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 467889999987777888999999999999999875 566888876555
No 221
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.18 E-value=0.22 Score=43.29 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=73.7
Q ss_pred HHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHh-cCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc-
Q 017402 274 AVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLK-TGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD- 350 (372)
Q Consensus 274 a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~- 350 (372)
|+.+|.-++- ++..|..+.. ...+..|+.++. ..++.++..++.+|..+...++.+...+.+.||+..+..++++.
T Consensus 111 aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~ 189 (257)
T PF08045_consen 111 ALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKS 189 (257)
T ss_pred HHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcccc
Confidence 5566666665 6667777766 789999999994 46788999999999999988899999999999999999999874
Q ss_pred -cHHHHHHHHHHHH
Q 017402 351 -NEKVRRNANNLIQ 363 (372)
Q Consensus 351 -~~~v~~~a~~~L~ 363 (372)
+.++|-+...-|-
T Consensus 190 ~~~~~r~K~~EFL~ 203 (257)
T PF08045_consen 190 TDRELRLKCIEFLY 203 (257)
T ss_pred ccHHHhHHHHHHHH
Confidence 7788888777664
No 222
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.18 E-value=0.23 Score=40.13 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=94.2
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cc-cccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DD-NKVG 169 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~-~~~~ 169 (372)
++..|......+++|..++-.+.++- +..++.+.+. .-+.+-..+. ..+.+-...+..++..+--. ++ ....
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~--~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLD--EGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHC--CHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHc--cccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 55666542346788888888887773 2344444331 2223333343 34445667777777665433 33 3445
Q ss_pred ccccCChHHHHHHHh--cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchH-HHHHHHHHHHh
Q 017402 170 LVAEGAVSRVVAALR--FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIR-EKKEAATALYA 243 (372)
Q Consensus 170 i~~~g~i~~lv~~L~--~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~-~~~~a~~aL~~ 243 (372)
+...|.++.++.+.. ..+...+..++.+|..-+.+..-+..|.. .+++.|-++++...+.. ++..|+-.|..
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 567899999999998 67888888888888887776666777766 67999999997555424 67777777764
No 223
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.14 E-value=0.83 Score=44.28 Aligned_cols=92 Identities=14% Similarity=0.224 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402 130 SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK 208 (372)
Q Consensus 130 ~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~ 208 (372)
.|++|.|..+|+ +....++.+.+..++.++..........+ -..-=.|+..|++.+.++|.+|...++.+|.
T Consensus 687 ~~ilP~ltPILr--nkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~----- 759 (975)
T COG5181 687 SGILPSLTPILR--NKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR----- 759 (975)
T ss_pred hhccccccHhhh--hhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh-----
Confidence 588999999999 78889999999999999887444332222 1233457888889999999999999988863
Q ss_pred hhhccccchHHHHHHHhhcCCc
Q 017402 209 ATIGDYPYAINALVSLLQNGKL 230 (372)
Q Consensus 209 ~~i~~~~g~i~~Lv~ll~~~~~ 230 (372)
.|+- ..++..|++-|+.++-
T Consensus 760 -aiGP-qdvL~~LlnnLkvqeR 779 (975)
T COG5181 760 -AIGP-QDVLDILLNNLKVQER 779 (975)
T ss_pred -hcCH-HHHHHHHHhcchHHHH
Confidence 3343 4677777777766543
No 224
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.09 E-value=0.038 Score=41.82 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=54.2
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNL 160 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l 160 (372)
.|+.+|..+ .++.+..-|...|+.++...|..|..+.+.|+=..+.+++. +.+++++..|+.++..+
T Consensus 47 ~L~~lL~~s-~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 47 KLIKLLDKS-DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHH-SH-HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHH
T ss_pred HHHHHHccC-CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence 477777543 37777777999999999999988888888899999999999 89999999999998764
No 225
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.05 E-value=0.087 Score=36.20 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcC
Q 017402 191 RAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCG 258 (372)
Q Consensus 191 ~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g 258 (372)
.+.|.+++.+++..+..-..+.+ .++++.++++....+.-.+|--|..+|.-++.+.++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 46789999999988777777766 69999999999876655899999999999999999988887765
No 226
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.03 E-value=0.49 Score=45.07 Aligned_cols=148 Identities=19% Similarity=0.228 Sum_probs=107.1
Q ss_pred hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHH--
Q 017402 217 AINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGRE-- 289 (372)
Q Consensus 217 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~-- 289 (372)
....+.+.+.+++. ..+..|..-|..++.+..-...++...++..|..++.++ .+.....|..++...+.--
T Consensus 84 ~a~~i~e~l~~~~~-~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEGNN-ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCCCc-HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 45677888888887 778789999999999998999999999999999999665 2233333344433211100
Q ss_pred -HHHhccchHHHHHHHH--hcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 290 -EMMRVSGCVGVFVKML--KTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 290 -~i~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
..+. ..+|...+.+. +..+..+-..|+..|-++...+...++.+.++--++.|+..++..+..++.+|..++..|.
T Consensus 163 W~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 0111 22444444444 2244566789999999999888888888999888999999999999999999888886543
No 227
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.67 Score=46.56 Aligned_cols=210 Identities=11% Similarity=0.058 Sum_probs=130.4
Q ss_pred CCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHH
Q 017402 144 SDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVS 223 (372)
Q Consensus 144 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ 223 (372)
+.-+.++..++..|..+.........+...+++...+..|++.|.-+-.+|...+..|+.. .. ...+|-|.+
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~-e~il~dL~e 809 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YP-EDILPDLSE 809 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cc-hhhHHHHHH
Confidence 4456688889999998887765556666789999999999999988888888888887643 12 356777766
Q ss_pred HhhcCCc---hHHHHHHHHHHHhhcCC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHH--HHHHh
Q 017402 224 LLQNGKL---IREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGR--EEMMR 293 (372)
Q Consensus 224 ll~~~~~---~~~~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~--~~i~~ 293 (372)
--.+... .+.+-..-.++.++... .+-.....+ -.+...++.++++ +..+++++++||..-..+ +.+.+
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 3332211 13444455666666542 222221111 2445555555544 566888999998744432 22222
Q ss_pred ccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCHHHHHHHHhc---ChhHHHHHHhhc-ccHHHHHHHHHHHHHH
Q 017402 294 VSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQEICGDSRKE---GVLDICMGLLED-DNEKVRRNANNLIQTL 365 (372)
Q Consensus 294 ~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---g~~~~l~~ll~~-~~~~v~~~a~~~L~~l 365 (372)
++..++.+.+. ++..+|+.|+..+..+-.+-....-.+.+. .....+..+... .++.+|.+|...|..+
T Consensus 889 ---v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 889 ---VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred ---HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 56666676654 678889999999988766433322333222 234444444444 4667788887776543
No 228
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.91 E-value=0.055 Score=30.28 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=25.0
Q ss_pred hhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 339 VLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 339 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
++|.+++++++.+++||.+|..+|..+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999987754
No 229
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.91 E-value=3.3 Score=38.70 Aligned_cols=219 Identities=10% Similarity=0.054 Sum_probs=130.4
Q ss_pred HHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhc--CCCCccccccc--------cccCChH
Q 017402 108 ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN--LSLDDDNKVGL--------VAEGAVS 177 (372)
Q Consensus 108 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~--l~~~~~~~~~i--------~~~g~i~ 177 (372)
.|++.|..+....+..-..+.+.||+..+++.|+ .+-....+. .-... -...++.+... .+.+.+.
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~--~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK 78 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQ--YEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLK 78 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHH--HHHHHHHhc--ccccCCCCCCCCCcccccccccccCHHHHHHHH
Confidence 5778888888777777888899999999999998 332222221 00000 00001111111 1223333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcc-cccchhhh---ccccchHHHHHHHhhcCCc--hHHHHHHHHHHHhhcCCCc-h
Q 017402 178 RVVAALRFGSPDCRAIAATIITSLAV-VEVNKATI---GDYPYAINALVSLLQNGKL--IREKKEAATALYALTSFPE-N 250 (372)
Q Consensus 178 ~lv~~L~~~~~~~~~~a~~~L~~ls~-~~~~~~~i---~~~~g~i~~Lv~ll~~~~~--~~~~~~a~~aL~~L~~~~~-~ 250 (372)
.|++++ ..+.. .......+ .+.......|-..+++... +.+...|+.++...-.++. .
T Consensus 79 ~lLk~l---------------~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~ 143 (379)
T PF06025_consen 79 SLLKFL---------------SHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS 143 (379)
T ss_pred HHHHHH---------------HHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch
Confidence 333333 33222 22222222 2212445556666665443 4788889999998877655 5
Q ss_pred hHHHHhcCchHHHHHHHh-hh---HHH----HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCCh-------hHHHh
Q 017402 251 RKRVVSCGAVPILMRLAD-AG---LER----AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSS-------RAVQC 315 (372)
Q Consensus 251 ~~~i~~~g~v~~L~~ll~-~~---~e~----a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~-------~~~~~ 315 (372)
-..+.++|.++.+++.+. .+ ... .-.++..||-+.+|.+.+.+ .+.++.+.+++.+..- ..-..
T Consensus 144 ~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~-~~~l~~~f~if~s~~~~~~l~~~d~a~~ 222 (379)
T PF06025_consen 144 FSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKS-SNPLDKLFEIFTSPDYVKALRRRDTASN 222 (379)
T ss_pred hHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHh-cChHHHHHHHhCCHHHHHHhcccchHHH
Confidence 567778899999999997 44 222 33778889999999999999 6899999998865221 11112
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcChhHHHHHHh
Q 017402 316 SLFTLSCLCCCSQEICGDSRKEGVLDICMGLL 347 (372)
Q Consensus 316 a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll 347 (372)
--..+-.|.++.|..+..+++. ++..+-++.
T Consensus 223 lG~~~DEL~RH~p~Lk~~i~~~-ii~~l~~l~ 253 (379)
T PF06025_consen 223 LGNSFDELMRHHPSLKPDIIDA-IIKILDRLV 253 (379)
T ss_pred HHHHHHHHHccCHHHHHHHHHH-HHHHHHHHH
Confidence 2234555677778887777665 344333333
No 230
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.91 E-value=3.9 Score=39.55 Aligned_cols=210 Identities=19% Similarity=0.182 Sum_probs=104.3
Q ss_pred CCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHH
Q 017402 144 SDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVS 223 (372)
Q Consensus 144 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ 223 (372)
+.-..+...+++++..++...-.-. ++ ...+..|-.+|++.....|-.|.++|-.|+.....+..... --++.|+.
T Consensus 275 ~k~emV~lE~Ar~v~~~~~~nv~~~-~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN--~evEsLIs 350 (898)
T COG5240 275 DKFEMVFLEAARAVCALSEENVGSQ-FV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN--KEVESLIS 350 (898)
T ss_pred CcchhhhHHHHHHHHHHHHhccCHH-HH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC--hhHHHHhh
Confidence 3446677888888887765431111 00 22455566667777888899999999999987766655554 23444432
Q ss_pred HhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-HHHHHHHHHHHhCC-HhHHHH--------HHh
Q 017402 224 LLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-LERAVEVLSILVKC-KEGREE--------MMR 293 (372)
Q Consensus 224 ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-~e~a~~~L~~L~~~-~~~~~~--------i~~ 293 (372)
+.+- .+...|...|.. ..++++...++. .|+.++.=+.++ .--++.++..||.. +..+.. +..
T Consensus 351 ---d~Nr-~IstyAITtLLK-TGt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~ 423 (898)
T COG5240 351 ---DENR-TISTYAITTLLK-TGTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ 423 (898)
T ss_pred ---cccc-cchHHHHHHHHH-cCchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 3332 344444443322 123344444433 233333333333 23344444444432 111111 112
Q ss_pred ccch-------HHHHHHHHhcCChhHHHhHHHHHHHHhcCC--HHHH----HHHHhcC--------hhHHHHHHhhcccH
Q 017402 294 VSGC-------VGVFVKMLKTGSSRAVQCSLFTLSCLCCCS--QEIC----GDSRKEG--------VLDICMGLLEDDNE 352 (372)
Q Consensus 294 ~~g~-------i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~----~~~~~~g--------~~~~l~~ll~~~~~ 352 (372)
+|+ ++.+..++. ..|..++.|+..|...-..+ ++.. ..+.++| .+..+.+-+--.|.
T Consensus 424 -eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ 501 (898)
T COG5240 424 -EGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENN 501 (898)
T ss_pred -cccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhh
Confidence 332 455555553 34566777766555543221 1111 1122333 34444444444566
Q ss_pred HHHHHHHHHHHHHh
Q 017402 353 KVRRNANNLIQTLS 366 (372)
Q Consensus 353 ~v~~~a~~~L~~l~ 366 (372)
-+|.+|..+|+.+-
T Consensus 502 ivRsaAv~aLskf~ 515 (898)
T COG5240 502 IVRSAAVQALSKFA 515 (898)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777776543
No 231
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.78 E-value=0.015 Score=57.83 Aligned_cols=45 Identities=20% Similarity=0.451 Sum_probs=37.8
Q ss_pred ccccCCcccCCCceecCCchHhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPVILSSGHTFDRASIQRWLDSG-HRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~ 54 (372)
+.|++|.+ ..+|+...|||.||+.|+...+... ...||.|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 7788888999999999999988653 346999987655
No 232
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.74 E-value=0.63 Score=39.24 Aligned_cols=143 Identities=14% Similarity=0.094 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcccccchhhhccccc---hHHHHHHHhhcCCc-hHHHHHHHHHHHhhcCCCc--hhHHHHhcCchHHHHH
Q 017402 192 AIAATIITSLAVVEVNKATIGDYPY---AINALVSLLQNGKL-IREKKEAATALYALTSFPE--NRKRVVSCGAVPILMR 265 (372)
Q Consensus 192 ~~a~~~L~~ls~~~~~~~~i~~~~g---~i~~Lv~ll~~~~~-~~~~~~a~~aL~~L~~~~~--~~~~i~~~g~v~~L~~ 265 (372)
-+|...|.-++++++.|..+.+ +- .+-+.+....+.+. .-.+..+++++..|..+++ ....+....+||.+++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 3566777778888888877765 32 33344444443322 2577889999999998765 5566667799999999
Q ss_pred HHhhh----HHHHHHHHHHHhCCHhHHHHHHhcc-------chHHHHHHHH-hcCChhHHHhHHHHHHHHhcCCHHHHHH
Q 017402 266 LADAG----LERAVEVLSILVKCKEGREEMMRVS-------GCVGVFVKML-KTGSSRAVQCSLFTLSCLCCCSQEICGD 333 (372)
Q Consensus 266 ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~-------g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 333 (372)
+++.+ +-.++.++..+-.++.|-+.++.+- ..+..++.-+ +.++.+...++.++-..+|.. ++.|..
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~-p~aR~l 275 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK-PHARAL 275 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC-HhHHHH
Confidence 99777 3357788888888888887766631 2233333333 446778889999999998876 877766
Q ss_pred HHh
Q 017402 334 SRK 336 (372)
Q Consensus 334 ~~~ 336 (372)
+..
T Consensus 276 L~~ 278 (315)
T COG5209 276 LSS 278 (315)
T ss_pred Hhc
Confidence 543
No 233
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.64 E-value=0.98 Score=42.49 Aligned_cols=262 Identities=18% Similarity=0.152 Sum_probs=139.8
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC------ccccccccccCC
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD------DDNKVGLVAEGA 175 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~------~~~~~~i~~~g~ 175 (372)
...+|.++++.|..++..-.-.+-.+++. ...+-.-+. +..+.+++.++..+..+-.. ++.-+.=...|.
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~~~~l--~RvI~~~~~--~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~ 343 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAYLMEL--GRVICKCMG--EADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAP 343 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccCC--CCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhcc
Confidence 34689999999999887433222222221 222222333 56788999999988776432 222221112221
Q ss_pred hHHHH------HHHh-cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 176 VSRVV------AALR-FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 176 i~~lv------~~L~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
+-.+. .... +..+..+..+|.++.+++...-++-.-......+..+...-.+++. -++..|.+++.-+..++
T Consensus 344 fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~-lv~~aA~Ra~~VyVLHp 422 (728)
T KOG4535|consen 344 FWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNR-LVKAAASRALGVYVLHP 422 (728)
T ss_pred HHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHH-HHHHHHHhhceeEEecc
Confidence 11111 1111 2245567778888888875442222211111222233332212222 45667777777777777
Q ss_pred chhHHHH-hcCchHHHHHHHhh-h---HHHHHHHHHHHhC-----CHh---HHHHHHhccchHHHHHHHHh---cCChhH
Q 017402 249 ENRKRVV-SCGAVPILMRLADA-G---LERAVEVLSILVK-----CKE---GREEMMRVSGCVGVFVKMLK---TGSSRA 312 (372)
Q Consensus 249 ~~~~~i~-~~g~v~~L~~ll~~-~---~e~a~~~L~~L~~-----~~~---~~~~i~~~~g~i~~L~~ll~---~~~~~~ 312 (372)
..+.... -..+...++..+.+ . ++++.+.++|++. .+. ....+.. -.+..++..-. ....++
T Consensus 423 ~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg--~ll~~~~~~A~~~~Ad~dkV 500 (728)
T KOG4535|consen 423 CLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG--LLLLKMLRSAIEASADKDKV 500 (728)
T ss_pred chhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH--HHHHHHHHHHHHhhhhhhhh
Confidence 6554332 22333444444433 3 7889999998876 111 1122221 12333333221 135678
Q ss_pred HHhHHHHHHHHhcCCH---H-HHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCCC
Q 017402 313 VQCSLFTLSCLCCCSQ---E-ICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPS 370 (372)
Q Consensus 313 ~~~a~~~L~~l~~~~~---~-~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 370 (372)
+.+|+.+|.++...-. + .-.++++....+.+....-.++-.||.+|+-++.+|-.|+-
T Consensus 501 ~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 501 KSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred hhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence 8899999999876411 1 11233333344444445556788999999999999988874
No 234
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.63 E-value=0.28 Score=39.57 Aligned_cols=141 Identities=21% Similarity=0.225 Sum_probs=94.1
Q ss_pred ChHHHHHHHhc--CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC-chh
Q 017402 175 AVSRVVAALRF--GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP-ENR 251 (372)
Q Consensus 175 ~i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~ 251 (372)
-++.++..|.. ..+++|..+.-++..+- +..+....+ -+-+.+-.++..... +....+..++..|-..+ +..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~~~~~-d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLDEGEM-DSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHCCHHC-CHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHccccc-hhHHHHHHHHHHHhCCCHHHH
Confidence 34556666653 57888888888887772 333444322 222333333333334 67888888898888744 555
Q ss_pred HHHH-hcCchHHHHHHHh--hh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChh-HHHhHHHHHHH
Q 017402 252 KRVV-SCGAVPILMRLAD--AG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSR-AVQCSLFTLSC 322 (372)
Q Consensus 252 ~~i~-~~g~v~~L~~ll~--~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~-~~~~a~~~L~~ 322 (372)
..+. ..|.++.++.++. +. ...++.+|..-|.+...|..+..+ +++.|-+..+. .++. ++..|+-+|..
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~--~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN--YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH--CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH--HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 5554 6688899999997 33 456788888888888889888884 79999898854 4455 67777766643
No 235
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.63 E-value=1.1 Score=39.84 Aligned_cols=219 Identities=14% Similarity=0.115 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHhh-cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc-cCChHHHH
Q 017402 103 LESKLESLTQLTKLSKRDSASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA-EGAVSRVV 180 (372)
Q Consensus 103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~g~i~~lv 180 (372)
+-.|.-|++.+.++.. .++.|..+-. ...-..++.+++++-++.++|...+-++..|+.++...+.|-+ .+.+..++
T Consensus 163 ~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 163 FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3456777788888887 5667776644 4455668888887657789999999999999998776543333 46777788
Q ss_pred HHHhcC-ChHHHHHHHHHHHHhcccccchhhhcc--ccchHHHHHHHhhcC--CchHHHHH---------------HHH-
Q 017402 181 AALRFG-SPDCRAIAATIITSLAVVEVNKATIGD--YPYAINALVSLLQNG--KLIREKKE---------------AAT- 239 (372)
Q Consensus 181 ~~L~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~--~~g~i~~Lv~ll~~~--~~~~~~~~---------------a~~- 239 (372)
++.+.. -..+-..+++++.|+... ..+..|.. ..|-+..-+..|... ++.+++.. ...
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK-~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDK-SPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-cccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 888764 455667888999998752 22222222 013234444444332 11111110 000
Q ss_pred -HHHh-----hcCCC---------chhHHHHhc--CchHHHHHHHhhh-----HHHHHHHHHHHhC-CHhHHHHHHhccc
Q 017402 240 -ALYA-----LTSFP---------ENRKRVVSC--GAVPILMRLADAG-----LERAVEVLSILVK-CKEGREEMMRVSG 296 (372)
Q Consensus 240 -aL~~-----L~~~~---------~~~~~i~~~--g~v~~L~~ll~~~-----~e~a~~~L~~L~~-~~~~~~~i~~~~g 296 (372)
-+.. |+.++ .|...+.+. ..+..|.+++++. ...|+.=+..+.+ .++++.-+.. .|
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K-yg 399 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK-YG 399 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH-hh
Confidence 0111 22222 255555544 3577888888554 2335555555555 6778888887 78
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLC 324 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 324 (372)
+-..+..++.+.+++++-.|+.++..+-
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999987753
No 236
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=94.62 E-value=0.015 Score=56.67 Aligned_cols=68 Identities=24% Similarity=0.489 Sum_probs=50.8
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHhc--CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCPITKLPLPDQPSLIPNHALRSLISNFTR 74 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~--~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~ 74 (372)
...+.||||...+++|+.+.|.|.||+.|+...+.. +...||+|+.... ....+......++++....
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e-K~s~~Es~r~sq~vqe~lk 88 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE-KRSLRESPRFSQLSKESLK 88 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh-hhhccccchHHHHHHHhcC
Confidence 346789999999999999999999999998765532 3568999997666 5555445555566655544
No 237
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.59 E-value=0.17 Score=42.13 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=77.5
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhc-------CCChhHHHHHHHHHhcCC
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIH-------SDGFTLQEKALSLLLNLS 161 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-------~~~~~~~~~a~~~L~~l~ 161 (372)
..++..|.+...+. +.+..|...-+. ...--+.|++.||+..|+++|... ..+.+.+..++++|..+.
T Consensus 69 ~~~i~~L~~~~~~~----~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 69 EWYIKKLKSRPSTS----KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHTTT--HH----HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCccH----HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 44777887653222 344555443333 334577888999999999999641 134578899999999998
Q ss_pred CCccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhc
Q 017402 162 LDDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLA 202 (372)
Q Consensus 162 ~~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls 202 (372)
.+..+...+.+ .+++..|+..|.+.+..++..++.+|..++
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 88777776665 789999999999999999999999998775
No 238
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.049 Score=49.11 Aligned_cols=64 Identities=30% Similarity=0.399 Sum_probs=48.9
Q ss_pred ccccCCcccCC------CceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC----CCCCCCccHHHHHHHHHH
Q 017402 9 FKCPISLEIMS------DPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP----DQPSLIPNHALRSLISNF 72 (372)
Q Consensus 9 ~~C~ic~~~~~------~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~----~~~~~~~n~~l~~~i~~~ 72 (372)
+.|-||.+.|. -|..+.|||++|..|+......+...||.||.+.. ....+..|..+...++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 56889988764 57788999999999998877766678999998843 123466777777777665
No 239
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=0.025 Score=56.00 Aligned_cols=42 Identities=19% Similarity=0.435 Sum_probs=35.5
Q ss_pred CccccCCcccCCCcee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPL 53 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~ 53 (372)
.-.|..|.-.+.-|++ ..|||.|+++|++ .+...||.|+...
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccchhh
Confidence 3579999999999976 6899999999998 3577899997633
No 240
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=6.5 Score=39.55 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=35.2
Q ss_pred HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
+|.+.++.+...++.+.++++... . ...++++|+.+|++... ++.-.+..+..++
T Consensus 295 Ll~S~n~sVVmA~aql~y~lAP~~----~---~~~i~kaLvrLLrs~~~--vqyvvL~nIa~~s 349 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHLAPKN----Q---VTKIAKALVRLLRSNRE--VQYVVLQNIATIS 349 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhhCCHH----H---HHHHHHHHHHHHhcCCc--chhhhHHHHHHHH
Confidence 334567788888888888887433 1 13578888888887653 4444444444444
No 241
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.18 E-value=0.076 Score=29.71 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.9
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 017402 176 VSRVVAALRFGSPDCRAIAATIITSLAV 203 (372)
Q Consensus 176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~ 203 (372)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999864
No 242
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=94.08 E-value=0.18 Score=42.99 Aligned_cols=85 Identities=13% Similarity=0.174 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHhc------cchHHHHHHHHh-cCChhHHHhHHHHHHHHhcCCHHHH-HHHHhcChhHH
Q 017402 271 LERAVEVLSILVKCKEGREEMMRV------SGCVGVFVKMLK-TGSSRAVQCSLFTLSCLCCCSQEIC-GDSRKEGVLDI 342 (372)
Q Consensus 271 ~e~a~~~L~~L~~~~~~~~~i~~~------~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~~~~ 342 (372)
+..++.+|..|+..+.+.+-+..+ +..+..|++++. ++++..+|.|+.+|.++|..+...+ ....+.+.+..
T Consensus 141 qrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~ 220 (257)
T PF12031_consen 141 QRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISH 220 (257)
T ss_pred HHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHH
Confidence 455666666666666665555542 224556666664 3678889999999999999877665 45577889999
Q ss_pred HHHHhhcccHHHH
Q 017402 343 CMGLLEDDNEKVR 355 (372)
Q Consensus 343 l~~ll~~~~~~v~ 355 (372)
|+.++++....++
T Consensus 221 Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 221 LIAFIEDAEQNAH 233 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998654443
No 243
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=1.4 Score=45.04 Aligned_cols=249 Identities=18% Similarity=0.167 Sum_probs=137.9
Q ss_pred HHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhh------cCCChhHHHHHHHHHhcCCCC---ccccccccccCChHH
Q 017402 108 ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKI------HSDGFTLQEKALSLLLNLSLD---DDNKVGLVAEGAVSR 178 (372)
Q Consensus 108 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~~~~~~~a~~~L~~l~~~---~~~~~~i~~~g~i~~ 178 (372)
.|+..+..++.. +.+..+ .|.++.+++.|.. ...++.-.+-|+.++.+|+.- ...-+...+.=.+..
T Consensus 391 Aa~~~l~~~~~K--R~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 391 AALDFLTTLVSK--RGKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH 466 (1010)
T ss_pred HHHHHHHHHHHh--cchhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 344445554442 123333 3578888888873 123445678888888887622 111122233334444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc-hhHHHHh
Q 017402 179 VVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE-NRKRVVS 256 (372)
Q Consensus 179 lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~ 256 (372)
+.-.++++.--.|..||+++..++..+ ...... ..+++...+.|.+.++-.++..|+-||..+-++.+ +..++..
T Consensus 467 VfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l---~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 467 VFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL---SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred hhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH---HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 555556777788999999999998443 222222 35788888888844443899999999998776554 4444544
Q ss_pred c--CchHHHHHHHhhh-HHHHHHHHHHHhC-CHhHH----HHHHhccchHHHHHHHHhc---CC---hhHHHhHHHHHHH
Q 017402 257 C--GAVPILMRLADAG-LERAVEVLSILVK-CKEGR----EEMMRVSGCVGVFVKMLKT---GS---SRAVQCSLFTLSC 322 (372)
Q Consensus 257 ~--g~v~~L~~ll~~~-~e~a~~~L~~L~~-~~~~~----~~i~~~~g~i~~L~~ll~~---~~---~~~~~~a~~~L~~ 322 (372)
. +.++.|+++.+.- .+....++..+.. .++.- ..++. ......+++++. .+ ..-...|.++|..
T Consensus 544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q--~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 544 HVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ--NLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH--HHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 3 3455555555443 3333333333322 22211 12222 245566677763 11 2223466666666
Q ss_pred HhcC--CHHHHHHHH---hcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 323 LCCC--SQEICGDSR---KEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 323 l~~~--~~~~~~~~~---~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
+..- +-+...++. +.-+++.+-.++++.-.++.+.+..++..+
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~ 669 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSL 669 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 6542 113333332 233666677777777677777776666544
No 244
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.97 E-value=2.8 Score=39.84 Aligned_cols=183 Identities=13% Similarity=0.052 Sum_probs=112.3
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhc-cccchHHHHHHHh-hcCCc---hHHHHHHHHHHHhhcC-C
Q 017402 175 AVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIG-DYPYAINALVSLL-QNGKL---IREKKEAATALYALTS-F 247 (372)
Q Consensus 175 ~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~-~~~g~i~~Lv~ll-~~~~~---~~~~~~a~~aL~~L~~-~ 247 (372)
.+..++.+..+ .+...+..++..+..+. ||..-. .....+..+...+ ..... ........|....|.. .
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~Lv----NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLV----NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHH----cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 66777777655 35677777777777765 221110 1124555555555 22222 1333334444444433 2
Q ss_pred CchhHHHHhcCchHHHHHHHhhh--HHHHHHHHHHHhCC-HhH-------------HHHHHhccchHHHHHHHHhcCChh
Q 017402 248 PENRKRVVSCGAVPILMRLADAG--LERAVEVLSILVKC-KEG-------------REEMMRVSGCVGVFVKMLKTGSSR 311 (372)
Q Consensus 248 ~~~~~~i~~~g~v~~L~~ll~~~--~e~a~~~L~~L~~~-~~~-------------~~~i~~~~g~i~~L~~ll~~~~~~ 311 (372)
+..-. ..++.|+.+++++ ...+...+..|..+ ++. ++++.. ..+|.|++..+..+..
T Consensus 266 ~~~~~-----~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~~ 338 (415)
T PF12460_consen 266 HPLAT-----ELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADDE 338 (415)
T ss_pred CchHH-----HHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcChh
Confidence 21111 2456788888665 56677777777765 322 344444 2688888888776666
Q ss_pred HHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 312 AVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 312 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
.+.....+|.++..+-|...-.---..++|.+++-+...+.+++..+...|..+-..
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 888999999999887663322222234899999999999999999999999866543
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.95 E-value=0.034 Score=49.97 Aligned_cols=44 Identities=25% Similarity=0.517 Sum_probs=34.8
Q ss_pred CccccCCcccCC-Cce---ecCCchHhhHHHHHHHHhc-CCCCCCCCCC
Q 017402 8 DFKCPISLEIMS-DPV---ILSSGHTFDRASIQRWLDS-GHRTCPITKL 51 (372)
Q Consensus 8 ~~~C~ic~~~~~-~Pv---~~~cgh~~c~~ci~~~~~~-~~~~CP~c~~ 51 (372)
++.|..|++.+- .|- -++|.|.|+.+|+..++.. +..+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 578999998753 332 4799999999999999965 3568999983
No 246
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.92 E-value=0.12 Score=43.46 Aligned_cols=149 Identities=18% Similarity=0.145 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcC---CChhHHHHHHHHHhcCCCCccc--cccccccCChHHHH
Q 017402 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHS---DGFTLQEKALSLLLNLSLDDDN--KVGLVAEGAVSRVV 180 (372)
Q Consensus 106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~---~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~lv 180 (372)
.-+|+..|+-++. .|+.+..+.++.+--.+..+|...+ ....++..+++++..|..+++- ...+....++|.++
T Consensus 117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3467777777776 6889999999987767777776422 2345789999999998877432 23444688999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccccchhhhcccc-------chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHH
Q 017402 181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYP-------YAINALVSLLQNGKLIREKKEAATALYALTSFPENRKR 253 (372)
Q Consensus 181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~-------g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 253 (372)
+++..++.-.+..|+-++..+-.++..-..|.+.- ..+..++.-+-+..+....+.++++-..||.++..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 99999999999999988888877776555554311 22333333332322237888999988889988887775
Q ss_pred HH
Q 017402 254 VV 255 (372)
Q Consensus 254 i~ 255 (372)
+-
T Consensus 276 L~ 277 (315)
T COG5209 276 LS 277 (315)
T ss_pred Hh
Confidence 54
No 247
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.86 E-value=0.05 Score=48.51 Aligned_cols=61 Identities=20% Similarity=0.448 Sum_probs=47.3
Q ss_pred CCCccccCCcccCCCcee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402 6 PDDFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR 74 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~ 74 (372)
.+-+.||+|.+.+..|+. ..-||.-|-.|-.+ ....||.|+.++. ++ .++.+++.++....
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g---~~-R~~amEkV~e~~~v 107 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIG---NI-RCRAMEKVAEAVLV 107 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCccccccc---cH-HHHHHHHHHHhcee
Confidence 356789999999999974 56799999998753 3557999998877 22 67778887777654
No 248
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.82 E-value=0.06 Score=42.38 Aligned_cols=34 Identities=21% Similarity=0.556 Sum_probs=24.9
Q ss_pred CCccccCCcccCCCceecCC------------chHh-hHHHHHHHHh
Q 017402 7 DDFKCPISLEIMSDPVILSS------------GHTF-DRASIQRWLD 40 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~c------------gh~~-c~~ci~~~~~ 40 (372)
|+.+||||++.-++.|.+-| +-+| ...|++++..
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 57799999999999998744 2222 3458888764
No 249
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=0.044 Score=46.31 Aligned_cols=54 Identities=15% Similarity=0.310 Sum_probs=40.6
Q ss_pred CCCccccCCcccCCCcee----cCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 017402 6 PDDFKCPISLEIMSDPVI----LSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~----~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n 62 (372)
...|.|||..-.|..-.. .+|||.|....+.+.. ...|++|+..+.....+.-|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEeeC
Confidence 456899999999987753 4899999988887655 34799999999843333334
No 250
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.74 E-value=4.4 Score=41.00 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=94.0
Q ss_pred HhcCChHHHHHHH-HHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchH
Q 017402 183 LRFGSPDCRAIAA-TIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVP 261 (372)
Q Consensus 183 L~~~~~~~~~~a~-~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~ 261 (372)
+.+++...|..|+ .+|..|+..++ + .-..+.+++...+.+. ++++-.-.=|.+.+........+ ++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d----m---ssLf~dViK~~~trd~-ElKrL~ylYl~~yak~~P~~~lL----avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED----M---SSLFPDVIKNVATRDV-ELKRLLYLYLERYAKLKPELALL----AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC----h---HHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhccCHHHHHH----HHH
Confidence 4455555555554 56666665444 1 2355556666553333 66666666666666544422222 334
Q ss_pred HHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhc
Q 017402 262 ILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE 337 (372)
Q Consensus 262 ~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 337 (372)
.+.+=+.++ +-.|+..++.|=. .++.. ..++.+.+.+.++++.+|+.|+.++..+=..+++ ...+.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~-----~el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~ 165 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRV-----KELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHEL 165 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcCh-----HHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcc
Confidence 444444333 2233333333221 12222 3677777888788888888888888776654333 34557
Q ss_pred ChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 338 GVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 338 g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
|.+..+..++.+.++.|..+|...|..+-.
T Consensus 166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 166 GLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred cHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 788888888888888888888877776543
No 251
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=93.69 E-value=0.15 Score=47.67 Aligned_cols=213 Identities=16% Similarity=0.143 Sum_probs=119.4
Q ss_pred CChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc-C---ChHHHHHHHHHHHHhcccccchhhhccccchHHH
Q 017402 145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-G---SPDCRAIAATIITSLAVVEVNKATIGDYPYAINA 220 (372)
Q Consensus 145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-~---~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~ 220 (372)
..+..+..++.++.++...+...- ..|-=...+.++.. + +.-++..|.+++.-+-.+...+....-...+...
T Consensus 361 ~~~Tl~~s~Cdals~i~~~~f~~l---pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~ 437 (728)
T KOG4535|consen 361 EHPTLQASACDALSSILPEAFSNL---PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANA 437 (728)
T ss_pred cCCCchhHHHHHHhhcCchhhcCC---CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHH
Confidence 345566777777777653321111 11111223333321 2 2335556666666666666566554443467777
Q ss_pred HHHHhhcCCchHHHHHHHHHHHhhcC-----CCchhHHHHhc-C-chHHHHHHHh-----hh--HHHHHHHHHHHhCCHh
Q 017402 221 LVSLLQNGKLIREKKEAATALYALTS-----FPENRKRVVSC-G-AVPILMRLAD-----AG--LERAVEVLSILVKCKE 286 (372)
Q Consensus 221 Lv~ll~~~~~~~~~~~a~~aL~~L~~-----~~~~~~~i~~~-g-~v~~L~~ll~-----~~--~e~a~~~L~~L~~~~~ 286 (372)
++..+.+..- ..++.+++++.|++. .+.-+..-.+. | .+..++.... .. ..++..+|.|+...-+
T Consensus 438 il~sl~d~~l-n~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq 516 (728)
T KOG4535|consen 438 ILMSLEDKSL-NVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ 516 (728)
T ss_pred HHHHhhhHhH-hHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH
Confidence 7777777665 789999999999863 12222222221 1 1222333221 11 5678888888876322
Q ss_pred HH-----HHHHhccchHHHHH-HHHhcCChhHHHhHHHHHHHHhcCCHHH-HHHH-HhcChhHHHHHHhhc-ccHHHHHH
Q 017402 287 GR-----EEMMRVSGCVGVFV-KMLKTGSSRAVQCSLFTLSCLCCCSQEI-CGDS-RKEGVLDICMGLLED-DNEKVRRN 357 (372)
Q Consensus 287 ~~-----~~i~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~-~~~g~~~~l~~ll~~-~~~~v~~~ 357 (372)
.- ..+.+ |.+..+. .....+.-+++=+|+.++.|+-++ +.. -+.+ +..-+.+.|..++.+ .|.+||..
T Consensus 517 ~i~~~~~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn-~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~ 593 (728)
T KOG4535|consen 517 PIEKPTFAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKN-PALPLQTAPWASQAFNALTSLVTSCKNFKVRIR 593 (728)
T ss_pred HhhhccHHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcC-ccccccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence 11 11222 2333222 222335567888999999999987 433 2333 334478888888887 48899999
Q ss_pred HHHHHHH
Q 017402 358 ANNLIQT 364 (372)
Q Consensus 358 a~~~L~~ 364 (372)
|+.+|..
T Consensus 594 AA~aL~v 600 (728)
T KOG4535|consen 594 AAAALSV 600 (728)
T ss_pred hhhhhcC
Confidence 9998853
No 252
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=2.2 Score=42.43 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=15.2
Q ss_pred CCchhHHHHhhccCCChHHHHHHHHHHHH
Q 017402 87 PNPQTLISVLTSKSSPLESKLESLTQLTK 115 (372)
Q Consensus 87 ~~~~~li~~L~~~~~~~~~~~~a~~~L~~ 115 (372)
|+.|+++...-....|+..+++|+..|..
T Consensus 170 pDapeLi~~fL~~e~DpsCkRNAFi~L~~ 198 (948)
T KOG1058|consen 170 PDAPELIESFLLTEQDPSCKRNAFLMLFT 198 (948)
T ss_pred CChHHHHHHHHHhccCchhHHHHHHHHHh
Confidence 34456664333333466666666655543
No 253
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.13 Score=49.36 Aligned_cols=71 Identities=38% Similarity=0.608 Sum_probs=62.8
Q ss_pred CCCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402 4 QFPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP 76 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~ 76 (372)
++|++|.-|+...+|+|||.++ .+-+..|+=|..++-. ..+-|.-|.+++ ..+..||..+++.+..+.+..
T Consensus 850 DvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLt-lddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 850 DVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLT-LDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred CCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCc-hhhcCCCHHHHHHHHHHHhcc
Confidence 5899999999999999999987 7889999999887764 567899999999 999999999999998887653
No 254
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=5.5 Score=40.97 Aligned_cols=254 Identities=17% Similarity=0.117 Sum_probs=137.5
Q ss_pred CChHHHHHHHHHHHHHhhc---ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChH
Q 017402 101 SPLESKLESLTQLTKLSKR---DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVS 177 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~ 177 (372)
.++..+..|+..+.+++.. +..++..+ +.=.+.-++..++ +..--++..|+++++.++.-+ .+..-.-..+++
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~--s~~g~Lrarac~vl~~~~~~d-f~d~~~l~~ale 505 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQ--SPYGYLRARACWVLSQFSSID-FKDPNNLSEALE 505 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhc--CchhHHHHHHHHHHHHHHhcc-CCChHHHHHHHH
Confidence 3455667777777777731 22233333 2223444555556 566678999999999987321 111111234566
Q ss_pred HHHHHHh-cCChHHHHHHHHHHHHhccccc-chhhhcc-ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC-chhHH
Q 017402 178 RVVAALR-FGSPDCRAIAATIITSLAVVEV-NKATIGD-YPYAINALVSLLQNGKLIREKKEAATALYALTSFP-ENRKR 253 (372)
Q Consensus 178 ~lv~~L~-~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~ 253 (372)
.....|. +.+..++..|+-||..+-++.+ ..+.+.. ..+.++.|+++.+..+. +........+. +... +.-..
T Consensus 506 ~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt~vme~iV--~~fseElsPf 582 (1010)
T KOG1991|consen 506 LTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN-DDLTNVMEKIV--CKFSEELSPF 582 (1010)
T ss_pred HHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-hHHHHHHHHHH--HHHHHhhchh
Confidence 7777777 5678899999999999877664 3354432 24778888888887665 45554444332 2211 11111
Q ss_pred HHh--cCchHHHHHHHhh----h---HHHHHHHHHHH---hC---CHhHHHHHHh--ccchHHHHHHHHhcCChhHHHhH
Q 017402 254 VVS--CGAVPILMRLADA----G---LERAVEVLSIL---VK---CKEGREEMMR--VSGCVGVFVKMLKTGSSRAVQCS 316 (372)
Q Consensus 254 i~~--~g~v~~L~~ll~~----~---~e~a~~~L~~L---~~---~~~~~~~i~~--~~g~i~~L~~ll~~~~~~~~~~a 316 (372)
..+ .......++++.. . .++++.+++-| .. .-+....+.. +.-..+.+-.++++.-..+=+.+
T Consensus 583 A~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~ 662 (1010)
T KOG1991|consen 583 AVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEEL 662 (1010)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 111 1234455666642 1 33333333322 22 1122222222 12345666666666555666777
Q ss_pred HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHH
Q 017402 317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQ 363 (372)
Q Consensus 317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~ 363 (372)
..+...+...+++..-.|++ +.+.+.+..+...-.--....-+|+
T Consensus 663 ~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~ 707 (1010)
T KOG1991|consen 663 LEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGIDYFTDMMPALH 707 (1010)
T ss_pred HHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 77777776666666666654 3566666555544333344444444
No 255
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.41 E-value=0.8 Score=39.16 Aligned_cols=83 Identities=20% Similarity=0.153 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHhcccccchhhhcccc------chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc--hhHHHHhcCc
Q 017402 188 PDCRAIAATIITSLAVVEVNKATIGDYP------YAINALVSLLQNGKLIREKKEAATALYALTSFPE--NRKRVVSCGA 259 (372)
Q Consensus 188 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~------g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~--~~~~i~~~g~ 259 (372)
..-+..|..+|..|+..+.|-..|.... ..+..|++++....++-.++.|+..|.+|+..++ .+....+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 3568899999999999999888876622 3555667777776666899999999999999776 3344457799
Q ss_pred hHHHHHHHhhh
Q 017402 260 VPILMRLADAG 270 (372)
Q Consensus 260 v~~L~~ll~~~ 270 (372)
|..|+..++..
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999999664
No 256
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.30 E-value=5.1 Score=34.88 Aligned_cols=196 Identities=14% Similarity=0.130 Sum_probs=107.8
Q ss_pred hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402 129 ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK 208 (372)
Q Consensus 129 ~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~ 208 (372)
....++.|+..|...+..+-++..|..+|.++. .+ +.++.+-+..++...++++.+..++..+--.+...
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 345678888888754456778888888888875 22 22344555555566777777667776653221100
Q ss_pred h-----h-hcc------ccchHHHHHHHhhcCCchHH-HHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHH--hhh--H
Q 017402 209 A-----T-IGD------YPYAINALVSLLQNGKLIRE-KKEAATALYALTSFPENRKRVVSCGAVPILMRLA--DAG--L 271 (372)
Q Consensus 209 ~-----~-i~~------~~g~i~~Lv~ll~~~~~~~~-~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll--~~~--~ 271 (372)
. . +.. ..+-|..|-..|.+...+.. +..|...|+|+-... +|-.|++-+ ++. +
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee----------aI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE----------AINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH----------HHHHHHHhcccchHHHH
Confidence 0 0 000 01123333333333222111 112233333322111 112222222 111 3
Q ss_pred HHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc--CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc
Q 017402 272 ERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT--GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLED 349 (372)
Q Consensus 272 e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~ 349 (372)
-.+..+++.|-. .-+++.|.+.|.+ ..+-+|-.|+.+|..++.. + +++.|.+.+.+
T Consensus 205 hEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~---------~~~vL~e~~~D 262 (289)
T KOG0567|consen 205 HEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D---------CVEVLKEYLGD 262 (289)
T ss_pred HHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H---------HHHHHHHHcCC
Confidence 334444444433 5578888888865 5677888999999988742 2 56777888888
Q ss_pred ccHHHHHHHHHHHHHHh
Q 017402 350 DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 350 ~~~~v~~~a~~~L~~l~ 366 (372)
..+.|++.+.-+|..+.
T Consensus 263 ~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 263 EERVVRESCEVALDMLE 279 (289)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 88999999988887654
No 257
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.30 E-value=1.6 Score=41.09 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=93.0
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHhhcCCCc----hhHHHHhcCchHHHHHHHhhh-----------HHHHHHHHHHHhCC
Q 017402 220 ALVSLLQNGKLIREKKEAATALYALTSFPE----NRKRVVSCGAVPILMRLADAG-----------LERAVEVLSILVKC 284 (372)
Q Consensus 220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~----~~~~i~~~g~v~~L~~ll~~~-----------~e~a~~~L~~L~~~ 284 (372)
.+..++...++ .-+-.|+.....++.+++ +++.+.++=+.+.+=+++.+. ...++.+|+.+|+.
T Consensus 15 ~~~~L~~~k~D-~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 15 DCLKLLKGKRD-EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hHHHHhcccCh-HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 35566666666 666677777778888765 677788988888888888332 45688999999998
Q ss_pred HhHH--HHHHhccchHHHHHHHHhc-CChh------HHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhh
Q 017402 285 KEGR--EEMMRVSGCVGVFVKMLKT-GSSR------AVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE 348 (372)
Q Consensus 285 ~~~~--~~i~~~~g~i~~L~~ll~~-~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~ 348 (372)
++-. .+++. .||.|.+.+.. .++. ..+.+...|..++.. +.....++..|+++.+-+.-.
T Consensus 94 pElAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 94 PELASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hhhccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHh
Confidence 7643 45666 59999999965 3333 567888999999988 778888999999998886554
No 258
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.20 E-value=2.1 Score=38.62 Aligned_cols=164 Identities=12% Similarity=0.102 Sum_probs=102.1
Q ss_pred CHHHHH-HHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhh
Q 017402 132 AVSAVL-NCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKAT 210 (372)
Q Consensus 132 ~i~~L~-~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~ 210 (372)
.+..|+ ..++ +.++.+++.|+.+|+-.+.-+... ....++.+...++.++.+++..|+.++..+.........
T Consensus 27 ll~~lI~P~v~--~~~~~vR~~al~cLGl~~Lld~~~----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 27 LLDSLILPAVQ--SSDPAVRELALKCLGLCCLLDKEL----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 344433 4556 678899999999999977654421 133467788888788999999999999988765421111
Q ss_pred ---------hccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHH-hhh-------HHH
Q 017402 211 ---------IGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLA-DAG-------LER 273 (372)
Q Consensus 211 ---------i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll-~~~-------~e~ 273 (372)
... ...+..+.+.+.+.++ +++..|+..++.|-....... ...++..|+-+- +.. +..
T Consensus 101 ~~~~~~~~~~~~-~~l~~~l~~~l~~~~~-~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 101 DSESDNDESVDS-KSLLKILTKFLDSENP-ELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred cchhccCccchH-hHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 111 3578888888888866 899999999998776554322 122333333332 111 112
Q ss_pred HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc
Q 017402 274 AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT 307 (372)
Q Consensus 274 a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~ 307 (372)
.-..+-..+......+..+. ...++.+..+...
T Consensus 176 L~~Ffp~y~~s~~~~Q~~l~-~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQERLA-EAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHhC
Confidence 22333444554444444444 4577777776654
No 259
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.14 E-value=0.11 Score=40.96 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=38.7
Q ss_pred CCCCCCCCccccCCcccCCCceecCCch-----HhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402 1 MATQFPDDFKCPISLEIMSDPVILSSGH-----TFDRASIQRWLDSG-HRTCPITKLPLP 54 (372)
Q Consensus 1 ~~~~~~~~~~C~ic~~~~~~Pv~~~cgh-----~~c~~ci~~~~~~~-~~~CP~c~~~~~ 54 (372)
|......+..|=||.+--. +..-||.. ..++.|+++|...+ ...||.|+.++.
T Consensus 1 ~~~~s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 1 MEDVSLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCcCCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3445566788999998743 34456543 34899999999764 568999998876
No 260
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.15 Score=46.42 Aligned_cols=45 Identities=24% Similarity=0.444 Sum_probs=33.2
Q ss_pred CCccccCCcccCCC---ceecCCchHhhHHHHHHHHhc----C---CCCCCCCCC
Q 017402 7 DDFKCPISLEIMSD---PVILSSGHTFDRASIQRWLDS----G---HRTCPITKL 51 (372)
Q Consensus 7 ~~~~C~ic~~~~~~---Pv~~~cgh~~c~~ci~~~~~~----~---~~~CP~c~~ 51 (372)
..|.|.||.+-..- =+.++|+|.||+.|...++.. + ...||.++-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 45789999986432 345799999999999999852 2 236887553
No 261
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.02 E-value=6.6 Score=35.39 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=103.5
Q ss_pred CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC--cccc-------cccc
Q 017402 101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD--DDNK-------VGLV 171 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~--~~~~-------~~i~ 171 (372)
.++.+|..|++.|+-.+--+.+.... .++.+...+. .++.+++..|+.+|..+... .+.- ....
T Consensus 39 ~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~--~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 39 SDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQ--KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred CCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 37899999999999999766533222 3677778886 56899999999999885432 1111 1122
Q ss_pred ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc--hHHHHHHHH-HHHhhcCCC
Q 017402 172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL--IREKKEAAT-ALYALTSFP 248 (372)
Q Consensus 172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~--~~~~~~a~~-aL~~L~~~~ 248 (372)
....++.+.+.+.+.+++++..|+..+..|-..+.... ...++..|+-+.-++.. ..-....+. .+-..+...
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~ 187 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSS 187 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCC
Confidence 35678888888888899999999999999876553333 14677777766655432 123334444 444556655
Q ss_pred chhHHHHhcCchHHHHHHH
Q 017402 249 ENRKRVVSCGAVPILMRLA 267 (372)
Q Consensus 249 ~~~~~i~~~g~v~~L~~ll 267 (372)
...+..+..+.++.+-.+.
T Consensus 188 ~~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 188 PENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5445555666777766666
No 262
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=93.02 E-value=0.12 Score=44.11 Aligned_cols=44 Identities=34% Similarity=0.543 Sum_probs=35.8
Q ss_pred CccccCCcccCCCcee-cCCchHhhHHHHHHHHhcC-CCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSG-HRTCPITKL 51 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~~-~~~CP~c~~ 51 (372)
+++||+......+|+. ..|||.|.|.-|....... ...||+-+.
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 5789999999999986 5699999999999887542 347999433
No 263
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.92 E-value=7.1 Score=38.83 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=77.1
Q ss_pred CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhh
Q 017402 132 AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATI 211 (372)
Q Consensus 132 ~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i 211 (372)
.+..+++... +.+..++...+.+|..+.....-...-+-.+....+..-+.+.-+.+|..|..+|..+=..+ +-+.
T Consensus 86 ~f~hlLRg~E--skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~-~dee- 161 (892)
T KOG2025|consen 86 TFYHLLRGTE--SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP-KDEE- 161 (892)
T ss_pred HHHHHHhccc--CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC-CCCc-
Confidence 3444444444 67888999999999888753222222233556666666677778999999999998885322 1111
Q ss_pred ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHh
Q 017402 212 GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVS 256 (372)
Q Consensus 212 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~ 256 (372)
..++..+..+++.+.+++++..| |.|++-++.....+++
T Consensus 162 ---~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 162 ---CPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE 200 (892)
T ss_pred ---ccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence 35677888888887666888765 4577777777777764
No 264
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=92.90 E-value=0.12 Score=35.29 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=22.3
Q ss_pred CccccCCcccCC-----Cceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMS-----DPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~-----~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.-.|.||.+-.- +|.+. .|+-..||.|++--...+...||.|+..+.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 357999997532 44443 488889999998878888899999997766
No 265
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.84 E-value=11 Score=38.09 Aligned_cols=149 Identities=21% Similarity=0.229 Sum_probs=98.8
Q ss_pred CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402 86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165 (372)
Q Consensus 86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 165 (372)
.++..+|..+|.+. ....+.+|++.|..+-..+... ...-|.+|+-.. +.+.+++.-.---|...+....
T Consensus 34 ~~~~~dL~~lLdSn--kd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVa--skn~EVKkLVyvYLlrYAEeqp 103 (968)
T KOG1060|consen 34 NIRHDDLKQLLDSN--KDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVA--SKNIEVKKLVYVYLLRYAEEQP 103 (968)
T ss_pred CCChHHHHHHHhcc--ccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhh--ccCHHHHHHHHHHHHHHhhcCC
Confidence 34456799999886 5566778998877666544422 234677888888 7899998887777777776655
Q ss_pred ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
+-..+ -|..+=+-|+++++.+|..|.++|..+ |..+.. .=.+-++-+...+..+ -+++.|+.||-.|-
T Consensus 104 dLALL----SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~Ia-PI~llAIk~~~~D~s~-yVRk~AA~AIpKLY 171 (968)
T KOG1060|consen 104 DLALL----SINTFQKALKDPNQLIRASALRVLSSI------RVPMIA-PIMLLAIKKAVTDPSP-YVRKTAAHAIPKLY 171 (968)
T ss_pred Cceee----eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHH-HHHHHHHHHHhcCCcH-HHHHHHHHhhHHHh
Confidence 43322 256677788889999998888777665 222222 1122233344445555 89999999999987
Q ss_pred C-CCchhHHHHh
Q 017402 246 S-FPENRKRVVS 256 (372)
Q Consensus 246 ~-~~~~~~~i~~ 256 (372)
+ .++-+.++++
T Consensus 172 sLd~e~k~qL~e 183 (968)
T KOG1060|consen 172 SLDPEQKDQLEE 183 (968)
T ss_pred cCChhhHHHHHH
Confidence 6 4455554433
No 266
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.83 E-value=1.2 Score=46.45 Aligned_cols=108 Identities=26% Similarity=0.270 Sum_probs=73.4
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhcCCCC--ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc----c
Q 017402 133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLD--DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE----V 206 (372)
Q Consensus 133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~----~ 206 (372)
++.+...++. -...+.+..|+..|..|+.. ++.+. ..++|-++.++.++..++|..|..+|..+-..- .
T Consensus 424 vs~lts~IR~-lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRA-LKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHh-hhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 4555566653 25677899999999999876 33332 567899999999999999999998888764321 1
Q ss_pred chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402 207 NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246 (372)
Q Consensus 207 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 246 (372)
.-..|-. .-++|.|-.++.+.....++..-+..|..||.
T Consensus 499 ~daniF~-eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 499 SDANIFP-EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred ccchhhH-hhhhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 2222322 35788888888874433566666666666654
No 267
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.75 E-value=3.3 Score=40.42 Aligned_cols=119 Identities=24% Similarity=0.290 Sum_probs=70.3
Q ss_pred cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC-CchhHHHHhcCchHHH
Q 017402 185 FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF-PENRKRVVSCGAVPIL 263 (372)
Q Consensus 185 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L 263 (372)
.++...+..|+..|...-..-+. +. ..+|..++.|..+.+. .++..|.+.|..+|.+ ++...++ ++.|
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~---l~--~~Ai~a~~DLcEDed~-~iR~~aik~lp~~ck~~~~~v~kv-----aDvL 101 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPD---LQ--EEAINAQLDLCEDEDV-QIRKQAIKGLPQLCKDNPEHVSKV-----ADVL 101 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GG---GH--HHHHHHHHHHHT-SSH-HHHHHHHHHGGGG--T--T-HHHH-----HHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChh---hH--HHHHHHHHHHHhcccH-HHHHHHHHhHHHHHHhHHHHHhHH-----HHHH
Confidence 36888999999999887543322 22 2689999999998888 9999999999999985 4566655 4588
Q ss_pred HHHHhhh--HH--HHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHh---cCChhHHHhHHHHHHH
Q 017402 264 MRLADAG--LE--RAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLK---TGSSRAVQCSLFTLSC 322 (372)
Q Consensus 264 ~~ll~~~--~e--~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~~ 322 (372)
+++|.+. .| .+-.+|..|-..+ ..+.+..|...+. .+++.+++.++..|..
T Consensus 102 ~QlL~tdd~~E~~~v~~sL~~ll~~d--------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 102 VQLLQTDDPVELDAVKNSLMSLLKQD--------PKGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHTT---HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 8888544 22 2223333332211 1233344444443 4566777777766643
No 268
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.45 E-value=4.3 Score=40.29 Aligned_cols=115 Identities=16% Similarity=0.093 Sum_probs=77.8
Q ss_pred cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhH
Q 017402 173 EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRK 252 (372)
Q Consensus 173 ~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 252 (372)
.|.+..+++...+.+..+|...+.+|..++........-+. .+.+..+..-+.+..+ .++.+|+.+|+.+-.++..-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep-~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREP-NVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCc-hHHHHHHHHHHHHhcCCCCC-
Confidence 45566666666778999999999999998753333333333 3778888888888777 99999999999987533210
Q ss_pred HHHhcCchHHHHHHHhhh--HHHHHHHHHHHhCCHhHHHHHHh
Q 017402 253 RVVSCGAVPILMRLADAG--LERAVEVLSILVKCKEGREEMMR 293 (372)
Q Consensus 253 ~i~~~g~v~~L~~ll~~~--~e~a~~~L~~L~~~~~~~~~i~~ 293 (372)
+..++..+..+++.+ .|.=-.+|.|++..+.....|++
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVE 200 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHH
Confidence 123556677777443 55555567888876655555554
No 269
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.27 E-value=11 Score=38.65 Aligned_cols=219 Identities=11% Similarity=0.070 Sum_probs=135.9
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA 181 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~ 181 (372)
.|....+++..+..++.....+...+.. ++...+..+.. +..+.++..|++++...+....... ...++++.|..
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~-~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~q 537 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTM-DVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQ 537 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhcc-CCCCchhHHHHHHHHhccCceeccc--cchHHHHHHHH
Confidence 4555557777777666644433322211 33344444442 3556788888888888762211111 13678888888
Q ss_pred HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcC-CchHHHHHHHHHHHhhcCCCchhHHHHhcCch
Q 017402 182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG-KLIREKKEAATALYALTSFPENRKRVVSCGAV 260 (372)
Q Consensus 182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v 260 (372)
+....+.++.-....+|......+.......+ .-+.|..+.+.... +++.+...+-.++..|+....+..-+.+ -.+
T Consensus 538 las~~s~evl~llmE~Ls~vv~~dpef~as~~-skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~i 615 (1005)
T KOG2274|consen 538 LASKSSDEVLVLLMEALSSVVKLDPEFAASME-SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLI 615 (1005)
T ss_pred HcccccHHHHHHHHHHHHHHhccChhhhhhhh-cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHH
Confidence 88777888888888899988887765555555 46777777776543 3357777777777777764444433333 378
Q ss_pred HHHHHHHhhh--------HHHHHHHHHHHhCCHh-HHHHHHhccchHHHHHHHHh-cCChhHHHhHHHHHHHHhcCCH
Q 017402 261 PILMRLADAG--------LERAVEVLSILVKCKE-GREEMMRVSGCVGVFVKMLK-TGSSRAVQCSLFTLSCLCCCSQ 328 (372)
Q Consensus 261 ~~L~~ll~~~--------~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~ 328 (372)
|.++..++.. ..-++.+|..+.+... .-..... .-++|++.+..- +++...-++|-.+|..+-..+.
T Consensus 616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 9999998433 4456777776666422 2222222 236788777764 4566777888888887765544
No 270
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.91 E-value=17 Score=38.52 Aligned_cols=248 Identities=18% Similarity=0.148 Sum_probs=125.7
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC----ccccccccccCChH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD----DDNKVGLVAEGAVS 177 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~ 177 (372)
..+.|.+|+.-|+.++.... --..+ -.++|.++.++. +....+|..|+.+|..+... +..-..|.-+=.+|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~-de~~L--DRVlPY~v~l~~--Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP 510 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYID-DEVKL--DRVLPYFVHLLM--DSEADVRATALETLTELLALVRDIPPSDANIFPEYLFP 510 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcc-hHHHH--hhhHHHHHHHhc--CchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence 45789999999999986422 11111 247899999999 78899999999998774322 22222344445677
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHHhcccc------------------cch-hhhcc--------ccchHHHHH-HHhhcC
Q 017402 178 RVVAALRFG-SPDCRAIAATIITSLAVVE------------------VNK-ATIGD--------YPYAINALV-SLLQNG 228 (372)
Q Consensus 178 ~lv~~L~~~-~~~~~~~a~~~L~~ls~~~------------------~~~-~~i~~--------~~g~i~~Lv-~ll~~~ 228 (372)
.|-.++.+. ...+|..-+.-|..||... .+- ..... ....|+.++ .++.+.
T Consensus 511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~ 590 (1431)
T KOG1240|consen 511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS 590 (1431)
T ss_pred hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC
Confidence 777777663 3334443334444433221 000 00000 000111111 122222
Q ss_pred CchHHHHHHHHHHHhhcCCCchhHHHHhcC----chHHHHHHHhhhHHH-HHHHHHHHhCCHh--HHHHHHhccchHHHH
Q 017402 229 KLIREKKEAATALYALTSFPENRKRVVSCG----AVPILMRLADAGLER-AVEVLSILVKCKE--GREEMMRVSGCVGVF 301 (372)
Q Consensus 229 ~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g----~v~~L~~ll~~~~e~-a~~~L~~L~~~~~--~~~~i~~~~g~i~~L 301 (372)
.+ -++..-+..|.-||. -+.+.+ +++.|+-.|++.... =.+....+..... |.+. ++ ++.+|.|
T Consensus 591 ~~-~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs-~s-eyllPLl 661 (1431)
T KOG1240|consen 591 PP-IVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS-VS-EYLLPLL 661 (1431)
T ss_pred ch-HHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee-HH-HHHHHHH
Confidence 11 233333333333331 111111 223333333222000 0011111111000 0000 12 4567888
Q ss_pred HHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 302 VKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 302 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
..-+.++.+.+-..|+++|..|+.. .-.++..+- .+++-..-++-..|.=+|+.+..++-..
T Consensus 662 ~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 662 QQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVK-DILQDVLPLLCHPNLWIRRAVLGIIAAI 723 (1431)
T ss_pred HHhccCcchhhHHHHHHHHHHHHHh-cccchHHHH-HHHHhhhhheeCchHHHHHHHHHHHHHH
Confidence 8888888899999999999999976 322222221 1344455566778888999998887543
No 271
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.90 E-value=0.13 Score=31.28 Aligned_cols=39 Identities=15% Similarity=0.352 Sum_probs=22.9
Q ss_pred ccCCcccCCCceecC---CchHhhHHHHHHHHhcCCC-CCCCC
Q 017402 11 CPISLEIMSDPVILS---SGHTFDRASIQRWLDSGHR-TCPIT 49 (372)
Q Consensus 11 C~ic~~~~~~Pv~~~---cgh~~c~~ci~~~~~~~~~-~CP~c 49 (372)
|.+|.++...-+.-+ |+-.+...|+..+|+.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667888776666543 8877888999999976443 69987
No 272
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.88 E-value=10 Score=36.03 Aligned_cols=204 Identities=17% Similarity=0.131 Sum_probs=108.6
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHH-hcCChHHHHHHHHHHHHhcccccchhh
Q 017402 133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAAL-RFGSPDCRAIAATIITSLAVVEVNKAT 210 (372)
Q Consensus 133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L-~~~~~~~~~~a~~~L~~ls~~~~~~~~ 210 (372)
+..++.+..+ ..++..+..++..+..+.-. ++.. .-...+..+...+ ...+...+..+..++..++..=--|..
T Consensus 191 l~~l~~~~~~-~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 191 LQSLLNLALS-SEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHc-CCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 3344444432 23455666666666655422 0000 0012233333333 223444444455555444422111111
Q ss_pred hccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC-Cc--------hhHHHHhcCc----hHHHHHHHhhh----HHH
Q 017402 211 IGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF-PE--------NRKRVVSCGA----VPILMRLADAG----LER 273 (372)
Q Consensus 211 i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~-~~--------~~~~i~~~g~----v~~L~~ll~~~----~e~ 273 (372)
-.. ...+..|+.++.+. ++...|+.++.-|..+ ++ +.+.+.++-. +|.|++-..+. +..
T Consensus 267 ~~~-~~~~~~L~~lL~~~---~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~ 342 (415)
T PF12460_consen 267 PLA-TELLDKLLELLSSP---ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN 342 (415)
T ss_pred chH-HHHHHHHHHHhCCh---hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence 111 24677888888773 6677788887777665 22 3333444443 44444444322 456
Q ss_pred HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHH
Q 017402 274 AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMG 345 (372)
Q Consensus 274 a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ 345 (372)
.+.+|.++..+-...-..-+-+..+|.|++-|...+..++..++.+|..+....++....=++ .+++.|+.
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 778888888754433333333457889999998888889999999999988776544333222 25555544
No 273
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=91.64 E-value=4.6 Score=41.10 Aligned_cols=212 Identities=13% Similarity=0.115 Sum_probs=131.5
Q ss_pred CChhHHHHHHHHHhcCCCCccccccccccCChHH----HHHHHh-cCChHHHHHHHHHHHHhcccccchhhhccccchHH
Q 017402 145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSR----VVAALR-FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAIN 219 (372)
Q Consensus 145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~----lv~~L~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~ 219 (372)
..+...-.+..++...+... .+..+.+.. .+..+. +..+.++..|++++...+.. +....-.++++.
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~-----~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~---~vl~~~~p~ild 533 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSST-----VINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKV---KVLLSLQPMILD 533 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhh-----ccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCc---eeccccchHHHH
Confidence 44555556666666443321 112222222 233332 34566778888888877622 111122257888
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh----hh--HHHHHHHHHHHhCCHhHHHHHHh
Q 017402 220 ALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD----AG--LERAVEVLSILVKCKEGREEMMR 293 (372)
Q Consensus 220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~----~~--~e~a~~~L~~L~~~~~~~~~i~~ 293 (372)
.|..+....++ ++......+|+..++.+.-.....++-+.|..+.+.- .+ ...+-.++..|+....+...+.+
T Consensus 534 ~L~qlas~~s~-evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e 612 (1005)
T KOG2274|consen 534 GLLQLASKSSD-EVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE 612 (1005)
T ss_pred HHHHHcccccH-HHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH
Confidence 88888877777 8999999999999987766666677777777777662 22 44455566666665555555554
Q ss_pred ccchHHHHHHHHhcCC----hhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHH-hhcccHHHHHHHHHHHHHHhc
Q 017402 294 VSGCVGVFVKMLKTGS----SRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGL-LEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 294 ~~g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~l-l~~~~~~v~~~a~~~L~~l~~ 367 (372)
..+|.|++.|.... ....--|+.+|..+.++.+ ..-+.+..- +.|.+.+. +++++...-..+..+|+.+-.
T Consensus 613 --~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 613 --RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred --HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 37999999997654 4555677777776766544 333344333 45555553 556777788888888887654
Q ss_pred C
Q 017402 368 N 368 (372)
Q Consensus 368 ~ 368 (372)
.
T Consensus 690 ~ 690 (1005)
T KOG2274|consen 690 V 690 (1005)
T ss_pred c
Confidence 4
No 274
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.49 E-value=0.12 Score=45.22 Aligned_cols=48 Identities=27% Similarity=0.575 Sum_probs=36.7
Q ss_pred CCCCccccCCcccCC---CceecCCchHhhHHHHHHHHhcC--CCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMS---DPVILSSGHTFDRASIQRWLDSG--HRTCPITKLP 52 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~---~Pv~~~cgh~~c~~ci~~~~~~~--~~~CP~c~~~ 52 (372)
...-|.||+-.+.-. .|+.+.|||..-+..+.+.-..| .+.||.|-..
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 345689999887643 57899999999998887766655 3689999543
No 275
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=91.42 E-value=10 Score=39.58 Aligned_cols=189 Identities=15% Similarity=0.117 Sum_probs=113.5
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHH
Q 017402 174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKR 253 (372)
Q Consensus 174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 253 (372)
++++.|...|++.|..++=.|+.-+..++.-.+ ..+.. .+|...++++...++...-.-|+.+|+.|+...=-...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad--~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD--QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH--HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 566777777778889999999999999875544 22222 57777777666555436667888899888864432222
Q ss_pred HHhcCchHHHHHHH---------hhh---HHHHHHHHHHHhCCHhHH--HHHHhccchHHHHHHHHhcCChhHHHhHHHH
Q 017402 254 VVSCGAVPILMRLA---------DAG---LERAVEVLSILVKCKEGR--EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFT 319 (372)
Q Consensus 254 i~~~g~v~~L~~ll---------~~~---~e~a~~~L~~L~~~~~~~--~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 319 (372)
..+ .++|.+++-+ ..| ++.|+.+.+.+++..+.. +.+.. .=.-..|...+.+..-.+|+.|..+
T Consensus 417 ~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHHH
Confidence 222 2566666665 112 788999999998854333 22222 1112233334445555667777777
Q ss_pred HHHHhcC-C-------------------H-----HHHHHHHh-cChhHHHHHHh-----hcccHHHHHHHHHHHHHHhcC
Q 017402 320 LSCLCCC-S-------------------Q-----EICGDSRK-EGVLDICMGLL-----EDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 320 L~~l~~~-~-------------------~-----~~~~~~~~-~g~~~~l~~ll-----~~~~~~v~~~a~~~L~~l~~~ 368 (372)
+...... + . +.+.-+.+ .|....+++-+ .+-+..+|+.|+++|+.|+..
T Consensus 495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 7665322 0 0 11111222 34444444432 345889999999999987643
No 276
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.17 E-value=7.4 Score=38.69 Aligned_cols=226 Identities=13% Similarity=0.073 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccc----ccccccc---CCh
Q 017402 106 KLESLTQLTKLSKRDSASRRKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN----KVGLVAE---GAV 176 (372)
Q Consensus 106 ~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~----~~~i~~~---g~i 176 (372)
..+....+..|+... ...+.+ ....-.|+++|+ .-+.+-.+....-+.. .. ... ...+... ..+
T Consensus 287 ~~~~~~~l~~L~~~~---~~~~~~~~~~~f~~lv~~lR--~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~ 359 (574)
T smart00638 287 EVQIVEVLKHLVQDI---ASDVQEPAAAKFLRLVRLLR--TLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPAL 359 (574)
T ss_pred hhhHHHHHHHHHHHH---HHHhccchHHHHHHHHHHHH--hCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHH
Confidence 334555566666432 222221 234555677777 4555555555554443 21 122 2233333 467
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhc-ccccchhhhccccchHHHHHHHhhcCC---chHHHHHHHHHHHhh----cCCC
Q 017402 177 SRVVAALRFGSPDCRAIAATIITSLA-VVEVNKATIGDYPYAINALVSLLQNGK---LIREKKEAATALYAL----TSFP 248 (372)
Q Consensus 177 ~~lv~~L~~~~~~~~~~a~~~L~~ls-~~~~~~~~i~~~~g~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L----~~~~ 248 (372)
..+.+.+.++.....+ ++.++..+. ..... . ...+..+..++.++. ...++..|..++++| |.+.
T Consensus 360 ~~i~~~i~~~~~~~~e-a~~~~~~~~~~~~~P-----t-~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 360 KFIKQWIKNKKITPLE-AAQLLAVLPHTARYP-----T-EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred HHHHHHHHcCCCCHHH-HHHHHHHHHHhhhcC-----C-HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 7777777776433222 222222221 11111 1 346777777777542 234555556655554 3333
Q ss_pred chhHHHHhcCchHHHHHHHhhh-----H---HHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHh---cCChhHHHhHH
Q 017402 249 ENRKRVVSCGAVPILMRLADAG-----L---ERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLK---TGSSRAVQCSL 317 (372)
Q Consensus 249 ~~~~~i~~~g~v~~L~~ll~~~-----~---e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~---~~~~~~~~~a~ 317 (372)
+.+...+....++.+...|... . -..+.+|+|+-. ...+..|..++. ..+..+|..|+
T Consensus 433 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------~~~i~~l~~~l~~~~~~~~~iR~~Av 501 (574)
T smart00638 433 PSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-----------PSSIKVLEPYLEGAEPLSTFIRLAAI 501 (574)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-----------hhHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 3322222334666677666432 1 225677777655 345555555554 23567888999
Q ss_pred HHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc--ccHHHHHHHHHHHHH
Q 017402 318 FTLSCLCCCSQEICGDSRKEGVLDICMGLLED--DNEKVRRNANNLIQT 364 (372)
Q Consensus 318 ~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~--~~~~v~~~a~~~L~~ 364 (372)
.+|..++...++. +-+.++.+..+ .+.++|-+|..+|-.
T Consensus 502 ~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 502 LALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 9999887543432 33445555544 466777777666543
No 277
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=5.4 Score=39.87 Aligned_cols=208 Identities=19% Similarity=0.214 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc------------------c
Q 017402 104 ESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD------------------D 165 (372)
Q Consensus 104 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~------------------~ 165 (372)
..+.-.++.+++.+..++.-+ ...|..+..+|. +.++.++..|+.+|..|+.++ +
T Consensus 221 ~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~--stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd 293 (948)
T KOG1058|consen 221 SLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLS--STSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD 293 (948)
T ss_pred HHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHh--cCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC
Confidence 344445555666665444322 335677888888 556667777777776666443 2
Q ss_pred ccc-ccc-------c-------cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc
Q 017402 166 NKV-GLV-------A-------EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL 230 (372)
Q Consensus 166 ~~~-~i~-------~-------~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~ 230 (372)
|.. .|+ + .|.+--++++|+++|.+++..+......|+.+. |-..++.. .-..+.+.-....+
T Consensus 294 nnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr-Nvediv~~--Lkke~~kT~~~e~d 370 (948)
T KOG1058|consen 294 NNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR-NVEDIVQF--LKKEVMKTHNEESD 370 (948)
T ss_pred cchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc-cHHHHHHH--HHHHHHhccccccc
Confidence 221 111 0 123333445556667777777776666665433 22222110 01111111111111
Q ss_pred --hHHHHHHHHHHHhhcCC-CchhHHHHhcCchHHHHHHHhhh-HHHHHHHHHHHhC----CHhHHHHHHhccchHHHHH
Q 017402 231 --IREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLADAG-LERAVEVLSILVK----CKEGREEMMRVSGCVGVFV 302 (372)
Q Consensus 231 --~~~~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~-~e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~L~ 302 (372)
.+-+..-..+|...+.. ++. .+.+|+.|++.+.+. .+.|..+|.-+.. .+.-|.. .+..|+
T Consensus 371 ~~~~yRqlLiktih~cav~Fp~~-----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~------ii~~l~ 439 (948)
T KOG1058|consen 371 DNGKYRQLLIKTIHACAVKFPEV-----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRAS------IIEKLL 439 (948)
T ss_pred cchHHHHHHHHHHHHHhhcChHH-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHH------HHHHHH
Confidence 23345555566555542 322 234678888888555 4444444444433 2233333 344444
Q ss_pred HHHhc-CChhHHHhHHHHHHHHhcCCHHHHH
Q 017402 303 KMLKT-GSSRAVQCSLFTLSCLCCCSQEICG 332 (372)
Q Consensus 303 ~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~ 332 (372)
.-+.. .+.++-+.|++++..-|....+.+.
T Consensus 440 ~~~~~irS~ki~rgalwi~GeYce~~~~i~~ 470 (948)
T KOG1058|consen 440 ETFPQIRSSKICRGALWILGEYCEGLSEIQS 470 (948)
T ss_pred HhhhhhcccccchhHHHHHHHHHhhhHHHHH
Confidence 44432 5677788999999998876554443
No 278
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.09 E-value=0.06 Score=40.37 Aligned_cols=32 Identities=19% Similarity=0.495 Sum_probs=26.1
Q ss_pred CCCCccccCCcccCCCce--ecCCchHhhHHHHH
Q 017402 5 FPDDFKCPISLEIMSDPV--ILSSGHTFDRASIQ 36 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv--~~~cgh~~c~~ci~ 36 (372)
+.++-.|++|.+.+.+++ +.||||.|+..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 456678999999888775 46899999999975
No 279
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.98 E-value=4.2 Score=41.20 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=105.0
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH
Q 017402 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV 255 (372)
Q Consensus 176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 255 (372)
.+..+..+.++-..+|.++...|..+....+.+..+.. .+++...++.+++.++ -+--+|...+..||.- .
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~-ekvl~i~ld~Lkdeds-yvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQG-EKVLAIALDTLKDEDS-YVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHHhcccCc-eeeHHHHHHHHHHHHh-------c
Confidence 33344444556678899999999999877766666666 6999999999999887 7777777766666642 2
Q ss_pred hcCchHHHHH-HHhhh----HH---HHHHHHHHHhCCHhHHHHHHh--ccchHHHHHHHHhcCChhHHHhHHHHHHHHhc
Q 017402 256 SCGAVPILMR-LADAG----LE---RAVEVLSILVKCKEGREEMMR--VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC 325 (372)
Q Consensus 256 ~~g~v~~L~~-ll~~~----~e---~a~~~L~~L~~~~~~~~~i~~--~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 325 (372)
....+|-|.+ ..+.. .+ ..=.++.++.. .+-.++. .+-.+...++.+++.+...|-.++.+|+++|.
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~q---a~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQ---ALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHH---HhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 2234444444 22111 01 11122222221 0001111 01123344444444555567888999999987
Q ss_pred CCH-HHHHHHHhcChhHHHHHHhh-cccHHHHHHHHHHHHHHhcC
Q 017402 326 CSQ-EICGDSRKEGVLDICMGLLE-DDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 326 ~~~-~~~~~~~~~g~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~~ 368 (372)
... .....+ ..++..++.+.+ +++.-+|++|..++..+-.+
T Consensus 877 ~~a~~vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 877 LLAFQVSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHhhhhhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 533 112222 225666666666 46889999999999766543
No 280
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.94 E-value=1.7 Score=42.92 Aligned_cols=151 Identities=20% Similarity=0.161 Sum_probs=91.0
Q ss_pred ccchHHHHHHHhhcC-CchHHHHHHHHHHHhhcCCCc---hhH---HHH-hc-----Cc----hHHHHHHHhhh----HH
Q 017402 214 YPYAINALVSLLQNG-KLIREKKEAATALYALTSFPE---NRK---RVV-SC-----GA----VPILMRLADAG----LE 272 (372)
Q Consensus 214 ~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~~---~~~---~i~-~~-----g~----v~~L~~ll~~~----~e 272 (372)
..|.+..|++.+.+. +.+...+.-...|++++.+.. +-. .++ +. |. ...++.+|++. +-
T Consensus 238 ls~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc 317 (1128)
T COG5098 238 LSGLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRC 317 (1128)
T ss_pred HHHHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHH
Confidence 346666667666654 223555566677777776432 211 111 11 11 23456667655 33
Q ss_pred HHHHHHHHHhCCHhHHHHHHhc-----cchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH---HHHHHHHhcChhHHHH
Q 017402 273 RAVEVLSILVKCKEGREEMMRV-----SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ---EICGDSRKEGVLDICM 344 (372)
Q Consensus 273 ~a~~~L~~L~~~~~~~~~i~~~-----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~~~~l~ 344 (372)
..+.+.+|+..+-....+++++ ...+..|++-+.+.+|..+..|+..+..++..+- .-+.+ ++....
T Consensus 318 ~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~e-----v~~lv~ 392 (1128)
T COG5098 318 CFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHE-----VIRLVG 392 (1128)
T ss_pred HHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHH-----HHHHHH
Confidence 4456666666533222233331 2356667777777899999999999999986532 33333 556667
Q ss_pred HHhhcccHHHHHHHHHHHH-HHhcCC
Q 017402 345 GLLEDDNEKVRRNANNLIQ-TLSGNP 369 (372)
Q Consensus 345 ~ll~~~~~~v~~~a~~~L~-~l~~~~ 369 (372)
+-+++-+..||++|.++++ .|..|+
T Consensus 393 r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 393 RRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 7788889999999999996 444443
No 281
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=90.60 E-value=12 Score=34.81 Aligned_cols=228 Identities=20% Similarity=0.156 Sum_probs=120.9
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhh
Q 017402 133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATI 211 (372)
Q Consensus 133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i 211 (372)
|..+++=|. ++....++..++--|..-+.++..+..+..+|.++.+++.+.. ++..+-..++.++..+...+..-..+
T Consensus 23 v~ylld~l~-~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLE-SSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcc-cCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 556666666 2456678888888888888899999999999999999999955 33335555544444444333333333
Q ss_pred ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhh-------------hHHHHHHHH
Q 017402 212 GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA-------------GLERAVEVL 278 (372)
Q Consensus 212 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~-------------~~e~a~~~L 278 (372)
....+....++.++............. .....+..++.+ +.+..+-+.+.. ++-.++.+|
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~l 174 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLAL 174 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHHH
Confidence 222567777788877111000000000 000111111111 111212222200 022344445
Q ss_pred HHHhC---------------CHhHHHHHHhccchHHHHHHHHhc----C-------Ch-----hHHHhHHHHHHHHhcCC
Q 017402 279 SILVK---------------CKEGREEMMRVSGCVGVFVKMLKT----G-------SS-----RAVQCSLFTLSCLCCCS 327 (372)
Q Consensus 279 ~~L~~---------------~~~~~~~i~~~~g~i~~L~~ll~~----~-------~~-----~~~~~a~~~L~~l~~~~ 327 (372)
..++. .+.-++++.+ .|++..++.++.. . .+ ..-..++++|-+.+..+
T Consensus 175 e~l~~~~~~~~~~~~t~~~~~~~fkeelr~-lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 175 ESLVRSLREAGDLSETSSRAGEWFKEELRE-LGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHhhcccchhhhhhccccchhhhhh-HHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 55531 1122445555 6889999888862 1 11 12357888888888777
Q ss_pred HHHHHHHHhc--Ch-hHHHHHHhhcccHHHH---HHHHHHHHHHhcCC
Q 017402 328 QEICGDSRKE--GV-LDICMGLLEDDNEKVR---RNANNLIQTLSGNP 369 (372)
Q Consensus 328 ~~~~~~~~~~--g~-~~~l~~ll~~~~~~v~---~~a~~~L~~l~~~~ 369 (372)
.++....+.. +. ...+..++....+.+. ..+.+++-+++.+.
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n 301 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN 301 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence 7776666553 23 3333334444444443 45555555666554
No 282
>PHA03096 p28-like protein; Provisional
Probab=90.51 E-value=0.18 Score=44.61 Aligned_cols=43 Identities=28% Similarity=0.469 Sum_probs=30.2
Q ss_pred ccccCCcccC-CCce------ec-CCchHhhHHHHHHHHhcC--CCCCCCCCC
Q 017402 9 FKCPISLEIM-SDPV------IL-SSGHTFDRASIQRWLDSG--HRTCPITKL 51 (372)
Q Consensus 9 ~~C~ic~~~~-~~Pv------~~-~cgh~~c~~ci~~~~~~~--~~~CP~c~~ 51 (372)
-.|.||++.. ..|. ++ .|.|.||..|+..|.... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 4699999853 2322 23 599999999999999753 345666654
No 283
>PHA02862 5L protein; Provisional
Probab=90.45 E-value=0.24 Score=38.32 Aligned_cols=45 Identities=16% Similarity=0.298 Sum_probs=33.5
Q ss_pred ccccCCcccCCCceecCCch-----HhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPVILSSGH-----TFDRASIQRWLDSG-HRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~~~cgh-----~~c~~ci~~~~~~~-~~~CP~c~~~~~ 54 (372)
-.|=||.+--.+. .-||.. ..++.|+.+|+... +..||.|+.++.
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 3688999876554 355543 36899999999753 458999998877
No 284
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=90.17 E-value=11 Score=37.30 Aligned_cols=164 Identities=14% Similarity=0.081 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccccc--CChHHH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE--GAVSRV 179 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~l 179 (372)
..+.+.-|+..|+-+..+...+-..+-..-+-..+..++.....++.-+..++++|.|+..++.+++.+... -.+..+
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~ 636 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPV 636 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhh
Confidence 345567777888877775554433333222223333333321256788999999999998888777766653 222222
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCC----chHHHHHHHHHHHhhcCCCchhHHH
Q 017402 180 VAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGK----LIREKKEAATALYALTSFPENRKRV 254 (372)
Q Consensus 180 v~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~----~~~~~~~a~~aL~~L~~~~~~~~~i 254 (372)
+..=..++..++...+....|++..- ....+ .|..+.|..++.... +-+..-..+.||.+|+..+.+..++
T Consensus 637 ~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~ 712 (745)
T KOG0301|consen 637 IEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQL 712 (745)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHH
Confidence 22222245666666555555555322 11111 245555555554322 2134445677888999988888888
Q ss_pred HhcCchHHHHHHHhh
Q 017402 255 VSCGAVPILMRLADA 269 (372)
Q Consensus 255 ~~~g~v~~L~~ll~~ 269 (372)
.+.=.++.+++-+.+
T Consensus 713 A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLKE 727 (745)
T ss_pred HHhcCHHHHHHHHHH
Confidence 777677777777743
No 285
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.07 E-value=2.9 Score=42.36 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=68.1
Q ss_pred HHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChH--HHHHHHhcCCh-
Q 017402 112 QLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVS--RVVAALRFGSP- 188 (372)
Q Consensus 112 ~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~--~lv~~L~~~~~- 188 (372)
.|.+...+++++.+.+.+.||+..+.+.++.. ...+.+..+++.+.|++...+.+.....-..+. .+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 78899999999999999999999999999975 778899999999999987765544333221122 23334444444
Q ss_pred HHHHHHHHHHHHhcccc
Q 017402 189 DCRAIAATIITSLAVVE 205 (372)
Q Consensus 189 ~~~~~a~~~L~~ls~~~ 205 (372)
+.--.++++|..+..+.
T Consensus 573 ersY~~~siLa~ll~~~ 589 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDS 589 (699)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 55566777777776553
No 286
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.97 E-value=0.27 Score=43.63 Aligned_cols=49 Identities=16% Similarity=0.311 Sum_probs=38.3
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHhc-CCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS-GHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~-~~~~CP~c~~~~~ 54 (372)
+++-.|.||-+-..=-..+||+|..|..|-.+.... ....||.|+..-.
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 466789999987766667899999999998775542 3567999997543
No 287
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=89.84 E-value=13 Score=32.50 Aligned_cols=191 Identities=21% Similarity=0.206 Sum_probs=119.3
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc---
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD--- 165 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~--- 165 (372)
.|-++..|.+.+..+.+|.+|..+|..+.. + +.++.+-+..+ +...++++.+..++..+-..+.
T Consensus 69 v~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~--dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 69 VPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIK--DPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred hHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhc--CCccccchHHHHHHHHHHHhhcccc
Confidence 366888888887788999999999988762 2 23455555554 4555666655555554422110
Q ss_pred --ccccc--------cccCChHHHHHHHhcCC-hHH-HHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHH
Q 017402 166 --NKVGL--------VAEGAVSRVVAALRFGS-PDC-RAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIRE 233 (372)
Q Consensus 166 --~~~~i--------~~~g~i~~lv~~L~~~~-~~~-~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~ 233 (372)
+.... ...+-+..+-..|.+.+ +.. +..|.-.|.|+ +. ..+|..|++-+..++. -.
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~-EeaI~al~~~l~~~Sa-lf 203 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GT-EEAINALIDGLADDSA-LF 203 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------Cc-HHHHHHHHHhcccchH-HH
Confidence 01011 12233555555554432 222 22333333332 22 3578888888877754 78
Q ss_pred HHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc
Q 017402 234 KKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT 307 (372)
Q Consensus 234 ~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~ 307 (372)
+..++.++..|-+. -+|+.|.+.|... +-.|+.+|..++. +.+++.|.+++..
T Consensus 204 rhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D 262 (289)
T KOG0567|consen 204 RHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGD 262 (289)
T ss_pred HHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCC
Confidence 88888888877543 3677888877433 5568888887776 6688889899888
Q ss_pred CChhHHHhHHHHHHHHhc
Q 017402 308 GSSRAVQCSLFTLSCLCC 325 (372)
Q Consensus 308 ~~~~~~~~a~~~L~~l~~ 325 (372)
..+-+++.+..+|-.+-.
T Consensus 263 ~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 263 EERVVRESCEVALDMLEY 280 (289)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 888888888877766543
No 288
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=89.70 E-value=23 Score=36.21 Aligned_cols=251 Identities=16% Similarity=0.101 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402 102 PLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV 180 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv 180 (372)
-.+.+...+.....++.. +.+.+..+.....+|.+..+.. +.+..++...+..+..++---. +..- -.-.++.++
T Consensus 368 ~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~--d~~~~vr~a~a~~~~~~~p~~~-k~~t-i~~llp~~~ 443 (759)
T KOG0211|consen 368 EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVL--DNALHVRSALASVITGLSPILP-KERT-ISELLPLLI 443 (759)
T ss_pred hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHh--cccchHHHHHhccccccCccCC-cCcC-ccccChhhh
Confidence 445666666667766643 2233455666667788877777 6777777777777766643211 1110 134567777
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCc
Q 017402 181 AALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGA 259 (372)
Q Consensus 181 ~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~ 259 (372)
..+++.+++++.+....+..+-... ........ ...+|.++.+-....- .++....+.+..++.... ...+.+. .
T Consensus 444 ~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s-~slLp~i~el~~d~~w-Rvr~ail~~ip~la~q~~-~~~~~~~-~ 519 (759)
T KOG0211|consen 444 GNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVS-NSLLPAIVELAEDLLW-RVRLAILEYIPQLALQLG-VEFFDEK-L 519 (759)
T ss_pred hhcchhhHHHHHhhHHHHHHHHhccCcccchhhh-hhhhhhhhhhccchhH-HHHHHHHHHHHHHHHhhh-hHHhhHH-H
Confidence 7888888999988887665443222 12222233 3567777776655544 667777777776665433 1111111 1
Q ss_pred hHHHHHHH-h---hhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHH
Q 017402 260 VPILMRLA-D---AGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSR 335 (372)
Q Consensus 260 v~~L~~ll-~---~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 335 (372)
-+.+..-+ + +-++.|...+..++..-. .+.... ..++.++.+...++-..|...+..+..++ +-.-+.+.
T Consensus 520 ~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~--~~i~k~L~~~~q~~y~~R~t~l~si~~la---~v~g~ei~ 593 (759)
T KOG0211|consen 520 AELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARL--EEIPKLLAMDLQDNYLVRMTTLFSIHELA---EVLGQEIT 593 (759)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHH--HhhHHHHHHhcCcccchhhHHHHHHHHHH---HHhccHHH
Confidence 11111111 1 115556655555554222 222222 13444444443333333443333333322 11123333
Q ss_pred hcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 336 KEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 336 ~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
..-.++.+.++..+..++||-.+++.|..+.
T Consensus 594 ~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 594 CEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred HHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 4446777777888888888888887776543
No 289
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=89.69 E-value=0.22 Score=43.55 Aligned_cols=43 Identities=33% Similarity=0.685 Sum_probs=34.9
Q ss_pred CccccCCcccC----CCceecCCchHhhHHHHHHHHhcCCCCCCCCCC
Q 017402 8 DFKCPISLEIM----SDPVILSSGHTFDRASIQRWLDSGHRTCPITKL 51 (372)
Q Consensus 8 ~~~C~ic~~~~----~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~ 51 (372)
++-||||.+.+ .+|..++|||+....|++.....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 45599999864 466678999998888888877776 99999976
No 290
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.26 E-value=2.4 Score=37.53 Aligned_cols=153 Identities=17% Similarity=0.143 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHhhcC--CHHHHHHHHhhc--CCChhHHHHHHHHHhcCCCCccccccccccC--ChH
Q 017402 104 ESKLESLTQLTKLSKRDSASRRKLTESG--AVSAVLNCLKIH--SDGFTLQEKALSLLLNLSLDDDNKVGLVAEG--AVS 177 (372)
Q Consensus 104 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g--~i~ 177 (372)
+.+.-++..++-++. ++..-..+...+ ....+..++... ...+..+-.+++++.|+..++.++..+.+.. .+-
T Consensus 78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~ 156 (268)
T PF08324_consen 78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSIL 156 (268)
T ss_dssp CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHH
T ss_pred ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHH
Confidence 456666666666665 555555555443 355666666532 2466789999999999998888887776642 233
Q ss_pred HHHHHHhcC----ChHHHHHHHHHHHHhcccccchhhhcc-ccchHHHHHHHhhcC-CchHHHHHHHHHHHhhcCCCchh
Q 017402 178 RVVAALRFG----SPDCRAIAATIITSLAVVEVNKATIGD-YPYAINALVSLLQNG-KLIREKKEAATALYALTSFPENR 251 (372)
Q Consensus 178 ~lv~~L~~~----~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~-~~~~~~~~a~~aL~~L~~~~~~~ 251 (372)
..+..+... +..++..++.++.|+|..-.....-.+ ....+..+++.+... .++++.-.++-+|++|...+...
T Consensus 157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence 333333333 688999999999999865422221111 013566677744332 44589999999999999777666
Q ss_pred HHHHhc
Q 017402 252 KRVVSC 257 (372)
Q Consensus 252 ~~i~~~ 257 (372)
....+.
T Consensus 237 ~~~~~~ 242 (268)
T PF08324_consen 237 KQLAKS 242 (268)
T ss_dssp HHHCCC
T ss_pred HHHHHH
Confidence 555553
No 291
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.15 E-value=9 Score=37.49 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=63.0
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccc
Q 017402 94 SVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVA 172 (372)
Q Consensus 94 ~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~ 172 (372)
..|....++...+.=|...|.++...-|+..+. ++..++++.. +.+..++..|++.|-.++.+ ++...
T Consensus 27 ~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcE--Ded~~iR~~aik~lp~~ck~~~~~v~---- 95 (556)
T PF05918_consen 27 EILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCE--DEDVQIRKQAIKGLPQLCKDNPEHVS---- 95 (556)
T ss_dssp HHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT---SSHHHHHHHHHHGGGG--T--T-HH----
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh--cccHHHHHHHHHhHHHHHHhHHHHHh----
Confidence 334333346777777888888888776765433 5778899998 88999999999999999987 34433
Q ss_pred cCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 017402 173 EGAVSRVVAALRFGSPDCRAIAATIITSLAV 203 (372)
Q Consensus 173 ~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~ 203 (372)
.+.+.|+++|..+++......-.+|..+-.
T Consensus 96 -kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 96 -KVADVLVQLLQTDDPVELDAVKNSLMSLLK 125 (556)
T ss_dssp -HHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 345778888988876666666666665543
No 292
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.03 E-value=2.4 Score=33.64 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=59.7
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~l~ 366 (372)
++..|.+-+.+.++.++..|+.+|-.+..+.. ....++.+...+..|+.++.. .+..|+.+...+++...
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 67777788888899999999999999887754 677788888899999999988 79999999999997543
No 293
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=88.98 E-value=16 Score=32.31 Aligned_cols=207 Identities=15% Similarity=0.068 Sum_probs=126.0
Q ss_pred HhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccC
Q 017402 95 VLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEG 174 (372)
Q Consensus 95 ~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g 174 (372)
.|.+ +++..|.+|+..|......-+... ....-+..|++++.+.-.+......++..+..|...... ..+
T Consensus 7 ~Lts--ed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~-----~~~ 76 (262)
T PF14500_consen 7 YLTS--EDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF-----SPE 76 (262)
T ss_pred hhCC--CCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC-----Chh
Confidence 3444 378899999999988776544221 233347888888864335566665557766666533221 122
Q ss_pred ChHHHHHHHh-c-----CChHHHHHHHHHHHHhcccccchhhhccc-cchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 175 AVSRVVAALR-F-----GSPDCRAIAATIITSLAVVEVNKATIGDY-PYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 175 ~i~~lv~~L~-~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
....+++.+- + -....|.....++..+.... ...+... .+.+..++..+..+.+|.....+...+..+...
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 2344444332 2 23556677777777775443 2222210 368999999999888888888888888877653
Q ss_pred CchhHHHHhcCchHHHHHHH------------hhh----HHH-HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCCh
Q 017402 248 PENRKRVVSCGAVPILMRLA------------DAG----LER-AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSS 310 (372)
Q Consensus 248 ~~~~~~i~~~g~v~~L~~ll------------~~~----~e~-a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~ 310 (372)
=+. ....+.+.+.+ +++ ++. ...+...|+..+ .+. +-+++.|++-|.+.++
T Consensus 155 ~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa--~~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 155 FDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFA--PFAFPLLLEKLDSTSP 222 (262)
T ss_pred ccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhH--HHHHHHHHHHHcCCCc
Confidence 331 22334444444 111 333 333344444432 222 3479999999999999
Q ss_pred hHHHhHHHHHHHHhc
Q 017402 311 RAVQCSLFTLSCLCC 325 (372)
Q Consensus 311 ~~~~~a~~~L~~l~~ 325 (372)
.++..++.+|...+.
T Consensus 223 ~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 223 SVKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
No 294
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.83 E-value=0.17 Score=42.97 Aligned_cols=60 Identities=18% Similarity=0.339 Sum_probs=37.5
Q ss_pred cccCCccc-CCCcee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402 10 KCPISLEI-MSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 75 (372)
Q Consensus 10 ~C~ic~~~-~~~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~ 75 (372)
.|--|... -.+|.. +.|+|.||..|...-. ...||.|+.++. ...+..| +-..+..+...
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir-~i~l~~s--lp~~ik~~F~d 66 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIR-IIQLNRS--LPTDIKSYFAD 66 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceee-eeecccc--cchhHHHHccC
Confidence 46656543 256654 5699999999985422 238999999876 4444444 44444455433
No 295
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.82 E-value=11 Score=35.37 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=78.8
Q ss_pred cccc-cCChHHHHHHHhcC---ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhh-cCC--chHHHHHHHHHH
Q 017402 169 GLVA-EGAVSRVVAALRFG---SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ-NGK--LIREKKEAATAL 241 (372)
Q Consensus 169 ~i~~-~g~i~~lv~~L~~~---~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~-~~~--~~~~~~~a~~aL 241 (372)
.+.+ ...+..|..++++. ...+-..|+.++..+--++...-.+....|.++.+++.+. .+. +.++....-.+|
T Consensus 100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l 179 (379)
T PF06025_consen 100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVL 179 (379)
T ss_pred cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 3445 45566666777664 5778889999999998777666555444899999999998 432 246777777788
Q ss_pred HhhcCCCchhHHHHhcCchHHHHHHHhhh
Q 017402 242 YALTSFPENRKRVVSCGAVPILMRLADAG 270 (372)
Q Consensus 242 ~~L~~~~~~~~~i~~~g~v~~L~~ll~~~ 270 (372)
..||.+.++.+++.+.+.++.+++++.+.
T Consensus 180 ~AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 180 SAICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred hHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 99999999999999999999999999543
No 296
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.42 E-value=1.2 Score=37.13 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=37.1
Q ss_pred CccccCCcccCC--CceecCCchHhhHHHHHHHHhc-------CCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMS--DPVILSSGHTFDRASIQRWLDS-------GHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~--~Pv~~~cgh~~c~~ci~~~~~~-------~~~~CP~c~~~~~ 54 (372)
.--|.+|.-.+. |-+.+.|-|.|.-.|+..|-.. ....||.|.+++.
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 345889988764 6677899999999999999864 2357999988766
No 297
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=88.42 E-value=0.33 Score=31.21 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=24.8
Q ss_pred CCccccCCcccCCCceecCCchHhhHHHHHHHHhc-CCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS-GHRTCPITKLP 52 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~-~~~~CP~c~~~ 52 (372)
+.|.||.|.+.+.. ..+...|....... ....||.|...
T Consensus 1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchhh
Confidence 46899999994433 23555555555543 24579999754
No 298
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=88.39 E-value=7.2 Score=40.59 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=92.2
Q ss_pred chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHH
Q 017402 216 YAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREE 290 (372)
Q Consensus 216 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~ 290 (372)
++++.|+..+++.+. .++..|++.+..++...+ ..+++ .+|...++++... ---++-+|+.|+.-.--...
T Consensus 341 ~vie~Lls~l~d~dt-~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDT-VVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcc-hhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 789999999999888 999999999999987554 22222 2556666655221 33577778888774332222
Q ss_pred HHhccchHHHHHHHHhc--------CChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHH
Q 017402 291 MMRVSGCVGVFVKMLKT--------GSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNL 361 (372)
Q Consensus 291 i~~~~g~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~ 361 (372)
... ..++.++.-+.. ....+|..|+.+.|.++... +..-+-++..=.-..|...+-+..-+.|++|..+
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 232 256666655532 24578999999999998653 2222223332223344445566778899999999
Q ss_pred HHHH
Q 017402 362 IQTL 365 (372)
Q Consensus 362 L~~l 365 (372)
+...
T Consensus 495 lqE~ 498 (1133)
T KOG1943|consen 495 LQEN 498 (1133)
T ss_pred HHHH
Confidence 8643
No 299
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=88.31 E-value=30 Score=34.88 Aligned_cols=253 Identities=16% Similarity=0.121 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhh--cChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHH
Q 017402 106 KLESLTQLTKLSK--RDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAAL 183 (372)
Q Consensus 106 ~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L 183 (372)
...|++.+.++.. ..++-...+.+.=+++.+...++ +..--++..|+..+..+..+ .+....-..+.+.....+
T Consensus 433 ~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~--s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl 508 (970)
T COG5656 433 AEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFR--SNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCL 508 (970)
T ss_pred HhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhc--CcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHH
Confidence 3445555554443 22222333334334555666667 66677889999999888443 333223345677788888
Q ss_pred hcCChHHHHHHHHHHHHhcccccchhhhcc-ccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC--chhHHHHhcCch
Q 017402 184 RFGSPDCRAIAATIITSLAVVEVNKATIGD-YPYAINALVSLLQNGKLIREKKEAATALYALTSFP--ENRKRVVSCGAV 260 (372)
Q Consensus 184 ~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~--~~~~~i~~~g~v 260 (372)
++.+..++..|+-|+.-+-.++...+++.+ ..+.++.|+.+-+.-+. +........+..=...+ .-...++. ..+
T Consensus 509 ~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fei-D~LS~vMe~fVe~fseELspfa~eLa~-~Lv 586 (970)
T COG5656 509 KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEI-DPLSMVMESFVEYFSEELSPFAPELAG-SLV 586 (970)
T ss_pred hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccc-hHHHHHHHHHHHHhHHhhchhHHHHHH-HHH
Confidence 888999999999999988887766666644 13566666666655444 44444444332211110 01111111 123
Q ss_pred HHHHHHH----hhh-------HH---HHHHHHHHHhC---CHhHHHHHHh--ccchHHHHHHHHhcCChhHHHhHHHHHH
Q 017402 261 PILMRLA----DAG-------LE---RAVEVLSILVK---CKEGREEMMR--VSGCVGVFVKMLKTGSSRAVQCSLFTLS 321 (372)
Q Consensus 261 ~~L~~ll----~~~-------~e---~a~~~L~~L~~---~~~~~~~i~~--~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 321 (372)
...+++. +.+ .+ .|..+|..+.. .-+++..+.. .....|.+--++++.-...-+.|+.+|-
T Consensus 587 ~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dild 666 (970)
T COG5656 587 RQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILD 666 (970)
T ss_pred HHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333333 111 11 23333333222 1122221111 0112333333444444455566666666
Q ss_pred HHhcCCHHHHHHHHhcChhHHHHHHhhccc-HHHHHHHHHHHHHHh
Q 017402 322 CLCCCSQEICGDSRKEGVLDICMGLLEDDN-EKVRRNANNLIQTLS 366 (372)
Q Consensus 322 ~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~-~~v~~~a~~~L~~l~ 366 (372)
+....+.+.-..| =|+.+.+.+++.+.. ..--+.++.+|.++-
T Consensus 667 g~tf~skeI~pim--wgi~Ell~~~l~~~~t~~y~ee~~~al~nfi 710 (970)
T COG5656 667 GYTFMSKEIEPIM--WGIFELLLNLLIDEITAVYSEEVADALDNFI 710 (970)
T ss_pred hhhHHHHHhhhhh--hHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence 6444433333222 356677777776644 244566667776553
No 300
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.27 E-value=20 Score=34.01 Aligned_cols=169 Identities=12% Similarity=0.015 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHH
Q 017402 188 PDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRL 266 (372)
Q Consensus 188 ~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~l 266 (372)
.+-+..|..-|..+...+ ..-+.=.- ..++..+++.|.+..+...++.|++.|..++.+...+-.=-..-+|..+++.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 444555555444443332 22222111 2467788888887444378899999999998876543211111233344443
Q ss_pred Hhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChh
Q 017402 267 ADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVL 340 (372)
Q Consensus 267 l~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~ 340 (372)
-.+. ....=.++.-++.+.. ...|..+..++...+...-..++..+..++..= .+-..-++ ..+.
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P--------~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~dia 450 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLP--------LQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDIA 450 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCc--------hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhh
Confidence 3222 1111122222333211 224555556665555554555555666665431 11111112 4578
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 341 DICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 341 ~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
|-+++.-.+.+..||+.|.-+|-.+-
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 88888888889999999988875543
No 301
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.13 E-value=0.25 Score=51.62 Aligned_cols=47 Identities=30% Similarity=0.473 Sum_probs=38.3
Q ss_pred CCccccCCcccCCC-ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSD-PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~-Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..+.|++|.+++++ --+..|||.+|.+|...|... ...||.|+....
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhhhh
Confidence 45689999999994 456779999999999999986 567999975443
No 302
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=88.09 E-value=19 Score=33.61 Aligned_cols=268 Identities=14% Similarity=0.182 Sum_probs=137.9
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhh--c------CCChhHHHHHHHHHhcCCCC
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKI--H------SDGFTLQEKALSLLLNLSLD 163 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~------~~~~~~~~~a~~~L~~l~~~ 163 (372)
+...|.++ ....-+...+..++-|+++.. .-+.+.....+..|+.+-+- . ..+..+...++++|.|+..+
T Consensus 50 i~~Vle~~-~p~t~~v~~LetvrILSRdk~-~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 50 IFEVLENG-EPLTHRVVCLETVRILSRDKD-GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHhcC-CCchhhhhHHHHHHHHhcccc-ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 45566655 234455567777777776432 33333222223334333221 0 13457899999999999888
Q ss_pred -ccccccccccCChHHHHHHHhc-----CChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCC-------
Q 017402 164 -DDNKVGLVAEGAVSRVVAALRF-----GSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGK------- 229 (372)
Q Consensus 164 -~~~~~~i~~~g~i~~lv~~L~~-----~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~------- 229 (372)
...+....+......+.+.+.. --..+...-.+.|+-++..+ +.+..+....++++.+.+++.+.-
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 4556666677666677766632 12344455566666665444 455554443688999999987521
Q ss_pred -c---h---HHHHHHHHHHHhhcCCCc--hh-HHHHhcCchHHHHHHH----hhh-----------------HHHHHHHH
Q 017402 230 -L---I---REKKEAATALYALTSFPE--NR-KRVVSCGAVPILMRLA----DAG-----------------LERAVEVL 278 (372)
Q Consensus 230 -~---~---~~~~~a~~aL~~L~~~~~--~~-~~i~~~g~v~~L~~ll----~~~-----------------~e~a~~~L 278 (372)
+ + +...+++.++.|++.+.. .+ ......-.+..+++.+ ... .+.++.++
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~~~~~ 287 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKCLDVL 287 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhhhhcc
Confidence 0 1 234467777778876443 22 2222222222333222 000 11222222
Q ss_pred HHHhCCHhHHHHHHhccc-hHHHHHHHHhcCCh----------hHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHh
Q 017402 279 SILVKCKEGREEMMRVSG-CVGVFVKMLKTGSS----------RAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLL 347 (372)
Q Consensus 279 ~~L~~~~~~~~~i~~~~g-~i~~L~~ll~~~~~----------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll 347 (372)
.-.-.++..-+.+....| .+..+..+|.. ++ ......+.+|..+|.. ........+..++|+|.++.
T Consensus 288 ~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~-~~~qq~~~ss~~EllsPvlsVL~~car~-~R~~Rkylr~qVLPPLrDV~ 365 (532)
T KOG4464|consen 288 AGAKPHECCSQCFEKRNGRNMDVILRLLNF-SEKQQEKESSLHELLSPVLSVLTECARS-HRVMRKYLRQQVLPPLRDVS 365 (532)
T ss_pred cCCCCcchHHHHHHHhcchhHHHHHHHHHh-hHHHHhhhhhhhhhhhhHHHHHHHHHhh-hHHHHHHHHHhcCCchhhhh
Confidence 222223333332322222 34555555432 11 1222445667776665 44445555556999999887
Q ss_pred hcc--cHHHHHHHHHHHH
Q 017402 348 EDD--NEKVRRNANNLIQ 363 (372)
Q Consensus 348 ~~~--~~~v~~~a~~~L~ 363 (372)
+-. +..+|.+-++++.
T Consensus 366 ~RPEvg~tLRnkl~Rlmt 383 (532)
T KOG4464|consen 366 QRPEVGQTLRNKLVRLMT 383 (532)
T ss_pred cCcchhHHHHHhhHhhee
Confidence 753 4556666555543
No 303
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.90 E-value=24 Score=37.33 Aligned_cols=213 Identities=14% Similarity=0.123 Sum_probs=111.1
Q ss_pred CCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc--CCChhHHHHHHHHHhcCCCC-c-cccccccccCC
Q 017402 100 SSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH--SDGFTLQEKALSLLLNLSLD-D-DNKVGLVAEGA 175 (372)
Q Consensus 100 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~~~a~~~L~~l~~~-~-~~~~~i~~~g~ 175 (372)
+++..+|.++.+.|..++.. ++......+ -+..+.+.|.++ +.+...+...+.+|..|-.. + +....+ ...
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q--~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~ 739 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQ--RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKL 739 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHH
Confidence 35788999999999999985 322222222 233344433321 34555666666666655332 1 222211 223
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcc----cccchhhhccccchHHHHHHHhhcC--CchHHHHHH--HHHHHhhcCC
Q 017402 176 VSRVVAALRFGSPDCRAIAATIITSLAV----VEVNKATIGDYPYAINALVSLLQNG--KLIREKKEA--ATALYALTSF 247 (372)
Q Consensus 176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~----~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~~a--~~aL~~L~~~ 247 (372)
|+.++-.++.-+...+..|-..|..+.. .++..+. . ...|...+..+..+ .+ ..+..+ +-++..+...
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~-~~~lnefl~~Isagl~gd-~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--A-SAILNEFLSIISAGLVGD-STRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--h-HHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHH
Confidence 4555555566788888888888887762 1112111 1 23566666666544 22 223222 2333333321
Q ss_pred CchhHHHHhcCchHHHHHHH----hhh----HHHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHH
Q 017402 248 PENRKRVVSCGAVPILMRLA----DAG----LERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLF 318 (372)
Q Consensus 248 ~~~~~~i~~~g~v~~L~~ll----~~~----~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~ 318 (372)
. ..+...+.+..+++++ .+. ...|+..+..++. .++..-..-. +..++.+..++++....++...-.
T Consensus 816 ~---~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 816 F---KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred H---hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1 2223333444444444 222 4456666666655 2332222222 336788888877777777777777
Q ss_pred HHHHHhc
Q 017402 319 TLSCLCC 325 (372)
Q Consensus 319 ~L~~l~~ 325 (372)
.|-.++.
T Consensus 892 LlekLir 898 (1176)
T KOG1248|consen 892 LLEKLIR 898 (1176)
T ss_pred HHHHHHH
Confidence 7766654
No 304
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.88 E-value=3.6 Score=32.10 Aligned_cols=70 Identities=20% Similarity=0.144 Sum_probs=57.4
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHH-HHHHHHhcChhHHHHHHhhc---ccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQE-ICGDSRKEGVLDICMGLLED---DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~~~~l~~ll~~---~~~~v~~~a~~~L~~l~ 366 (372)
++..|-+-|+++++.++..|+.+|-.+..+... ...++.....+..|+.++.. .+..||.++..++....
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 677788888889999999999999999888654 67777776777778888875 48899999999997554
No 305
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=87.71 E-value=11 Score=38.55 Aligned_cols=165 Identities=15% Similarity=0.156 Sum_probs=100.5
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV 171 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 171 (372)
+...|..+ ..+.+|..+...+.+++..-+ ......+.++.+..+.. +....+++.|...+.++...-+.... .
T Consensus 241 ~~~~lc~d-~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~--DdqdsVr~~a~~~~~~l~~l~~~~~d-~ 313 (759)
T KOG0211|consen 241 IVQSLCQD-DTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLR--DDQDSVREAAVESLVSLLDLLDDDDD-V 313 (759)
T ss_pred HHHhhccc-cchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhh--cchhhHHHHHHHHHHHHHHhcCCchh-h
Confidence 33444443 367888888888888887433 36677888999999998 67788888888888776433111101 1
Q ss_pred ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC--CCc
Q 017402 172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS--FPE 249 (372)
Q Consensus 172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~--~~~ 249 (372)
...+.+.++...++++..++...+.....++..-.. .... ...+++...++++... +.+..++.-...++. +.+
T Consensus 314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~-~~~~~~~~~l~~~~~~-e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATR-TQLVPPVSNLLKDEEW-EVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCc-ccchhhHHHHhcchhh-hhhHHhhcchHHHhhhcCcc
Confidence 244667788888777777777766666666543222 3333 3567777777776654 455444444444443 223
Q ss_pred hhHHHHhcCchHHHHHHH
Q 017402 250 NRKRVVSCGAVPILMRLA 267 (372)
Q Consensus 250 ~~~~i~~~g~v~~L~~ll 267 (372)
....+....+++.+-.++
T Consensus 390 ~~~~i~~~~ilp~~~~lv 407 (759)
T KOG0211|consen 390 CYPNIPDSSILPEVQVLV 407 (759)
T ss_pred cccccchhhhhHHHHHHH
Confidence 444444444555555554
No 306
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=0.32 Score=45.36 Aligned_cols=47 Identities=21% Similarity=0.402 Sum_probs=32.3
Q ss_pred CccccCCc-ccCCCce---ecCCchHhhHHHHHHHHhc-----CCCCCCC--CCCCCC
Q 017402 8 DFKCPISL-EIMSDPV---ILSSGHTFDRASIQRWLDS-----GHRTCPI--TKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~-~~~~~Pv---~~~cgh~~c~~ci~~~~~~-----~~~~CP~--c~~~~~ 54 (372)
..+|.||. +.+...- +..|+|.||..|..+++.. ....||. |...++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 56899999 4433212 3569999999999999862 2347877 555444
No 307
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=87.51 E-value=4.3 Score=31.07 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=54.4
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhc-ChhHHHHHHhh-----c---ccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKE-GVLDICMGLLE-----D---DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~-g~~~~l~~ll~-----~---~~~~v~~~a~~~L~~l~ 366 (372)
.+..|.+-|++.++.++..++.+|..+|..+. +.+..+.+. ..|..+.+.-- . .+..||..|..++..+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 56677777778889999999999999998655 666666553 46777666654 1 25689999999999876
Q ss_pred cC
Q 017402 367 GN 368 (372)
Q Consensus 367 ~~ 368 (372)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 54
No 308
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.35 E-value=4 Score=32.25 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=59.3
Q ss_pred chHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHHHh
Q 017402 296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 296 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~l~ 366 (372)
.++..|.+-|+++++.++-.|+.+|-.+..+. .....++.+.+.+..|+.++.. .+++||+++..++..-.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 36778888888899999999999999988874 5677888888899999999874 68899999999987543
No 309
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=87.00 E-value=19 Score=31.11 Aligned_cols=136 Identities=20% Similarity=0.148 Sum_probs=84.1
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccc
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL 170 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 170 (372)
.++..+.+. ++++.+...+..|..++..+..+.. -++..|..+.. .++.+....+.+.+..+....+-.-
T Consensus 4 ~L~~~l~~~-~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~--~~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 4 LLLYKLGKI-SDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVE--QGSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred HHHHHhcCC-CChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHc--CCchhHHHHHHHHHHHHHHhCchHH--
Confidence 345545444 5788899999999999986511221 13444555555 4556666677777777765433211
Q ss_pred cccCChHHHHHHH--h------cC--ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHh-hcCCchHHHHHHHH
Q 017402 171 VAEGAVSRVVAAL--R------FG--SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL-QNGKLIREKKEAAT 239 (372)
Q Consensus 171 ~~~g~i~~lv~~L--~------~~--~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~~a~~ 239 (372)
+.+..++..+ + ++ ..+.....+..+..++...++ .. ...++.+...+ ...++ .++..++.
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g-~~ll~~ls~~L~~~~~~-~~~alale 144 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HG-VDLLPLLSGCLNQSCDE-VAQALALE 144 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hH-HHHHHHHHHHHhccccH-HHHHHHHH
Confidence 4455555541 1 11 233444455677777766655 22 35788888888 45555 78889999
Q ss_pred HHHhhc
Q 017402 240 ALYALT 245 (372)
Q Consensus 240 aL~~L~ 245 (372)
+|..|+
T Consensus 145 ~l~~Lc 150 (234)
T PF12530_consen 145 ALAPLC 150 (234)
T ss_pred HHHHHH
Confidence 999998
No 310
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.72 E-value=20 Score=31.62 Aligned_cols=178 Identities=16% Similarity=0.149 Sum_probs=100.5
Q ss_pred CchhHHHHhhccCCChHHHHHHHHHHHHHhhcCh-------HHHHHHhhcCCHHHHHHHHhhcCCC----hhHHHHHHHH
Q 017402 88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDS-------ASRRKLTESGAVSAVLNCLKIHSDG----FTLQEKALSL 156 (372)
Q Consensus 88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~-------~~~~~i~~~g~i~~L~~lL~~~~~~----~~~~~~a~~~ 156 (372)
..+-+..++-+|-.+...-..+++.|..++.-.. +.|-.+.=.+.+|.++.-+. +.+ ......++..
T Consensus 61 ~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d--~~~~i~~~~~~~~~A~~ 138 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFD--DPNPIQPDQECIEIAEA 138 (262)
T ss_pred CchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhc--ccccccccHHHHHHHHH
Confidence 3444555555554444555567777777775321 12222222233344444444 223 1445666777
Q ss_pred HhcCCCCccccccccccCChHHHHHHHhcCC----hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchH
Q 017402 157 LLNLSLDDDNKVGLVAEGAVSRVVAALRFGS----PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIR 232 (372)
Q Consensus 157 L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~----~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~ 232 (372)
|..++.... .+.+..++.....+. .+....++..|..- +-... . ...+..|+++|.++.. -
T Consensus 139 La~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~-----f~P~~-~-~~~l~~Ll~lL~n~~~-w 203 (262)
T PF14225_consen 139 LAQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREA-----FFPDH-E-FQILTFLLGLLENGPP-W 203 (262)
T ss_pred HHHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----hCchh-H-HHHHHHHHHHHhCCcH-H
Confidence 777773211 223444554444332 23333333333321 11111 1 3578889999988877 8
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-HHHHHHHHHHHhC
Q 017402 233 EKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-LERAVEVLSILVK 283 (372)
Q Consensus 233 ~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-~e~a~~~L~~L~~ 283 (372)
.+...+..|+.+-..-+.+.. ...+.+.++++++.++ ...|+.+|.+...
T Consensus 204 ~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 204 LRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccHHHHHHHHHHHHh
Confidence 999999999998776554433 4556899999999887 7778887776544
No 311
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.63 E-value=27 Score=38.10 Aligned_cols=253 Identities=14% Similarity=0.129 Sum_probs=128.6
Q ss_pred CChHHHHHHHHHHHHHhhcChHH-HHHHhhcCCHHHHHHHHhhcCCChhHH-HHHHHHHhcCCCC--ccccccccc----
Q 017402 101 SPLESKLESLTQLTKLSKRDSAS-RRKLTESGAVSAVLNCLKIHSDGFTLQ-EKALSLLLNLSLD--DDNKVGLVA---- 172 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~-~~a~~~L~~l~~~--~~~~~~i~~---- 172 (372)
+-+++|.-++..+..+++..... +..+ ...||.|++... .-.+.+. +.++++ .|.... |..|..+.+
T Consensus 1143 ~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s--~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspm 1217 (1702)
T KOG0915|consen 1143 KVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYS--ELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPM 1217 (1702)
T ss_pred chHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHcc--ccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcH
Confidence 35788999999999999865431 1111 134555555554 3333332 222322 222111 111111111
Q ss_pred ----------------cCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHH
Q 017402 173 ----------------EGAVSRVVAALRFG-SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK 235 (372)
Q Consensus 173 ----------------~g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 235 (372)
...+|.+.++++.+ ....|..++..+..|+.-- ..++---....+.+++..+++.++ .+++
T Consensus 1218 meTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~-~~emtP~sgKll~al~~g~~dRNe-sv~k 1295 (1702)
T KOG0915|consen 1218 METINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL-GSEMTPYSGKLLRALFPGAKDRNE-SVRK 1295 (1702)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh-ccccCcchhHHHHHHhhccccccH-HHHH
Confidence 23567777777665 4555666666666665321 111111102377888888888776 7888
Q ss_pred HHHHHHHhhcCCC--chhHHHHhcCchHHHH-HHHh--hh-HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCC
Q 017402 236 EAATALYALTSFP--ENRKRVVSCGAVPILM-RLAD--AG-LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGS 309 (372)
Q Consensus 236 ~a~~aL~~L~~~~--~~~~~i~~~g~v~~L~-~ll~--~~-~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~ 309 (372)
.-+.|...|+... +...+.++ .++ .++. ++ ...++.++.+++.+.. +.+-++...+-+|+-+-....
T Consensus 1296 afAsAmG~L~k~Ss~dq~qKLie-----~~l~~~l~k~es~~siscatis~Ian~s~--e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1296 AFASAMGYLAKFSSPDQMQKLIE-----TLLADLLGKDESLKSISCATISNIANYSQ--EMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred HHHHHHHHHHhcCChHHHHHHHH-----HHHHHHhccCCCccchhHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHhHH
Confidence 8778888877633 23333333 333 2331 11 4557777777665432 233333344555544443322
Q ss_pred -hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 310 -SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 310 -~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
...++.=-.+...+...+....+....+=+...+.....+....+|..++.+++....
T Consensus 1369 ~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~ 1427 (1702)
T KOG0915|consen 1369 EKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAE 1427 (1702)
T ss_pred HHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcc
Confidence 1222222223333343333333333333345555566666778888888888876543
No 312
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=86.60 E-value=21 Score=36.42 Aligned_cols=193 Identities=16% Similarity=0.150 Sum_probs=122.1
Q ss_pred HHhcCCCC-ccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHH--HHHHHhhcCCch
Q 017402 156 LLLNLSLD-DDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAIN--ALVSLLQNGKLI 231 (372)
Q Consensus 156 ~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~--~Lv~ll~~~~~~ 231 (372)
+|.++... +++.+.+.+.|++..+...++. ...+.+..+.+.+.+++...+++..... ...+. .+-.++..-+..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~-~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMI-FEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHhhcchh
Confidence 77777666 7888999999999999999986 5788889999999999987766655443 12222 222333333333
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhhHHHHHHHH-HHHhCCHhHHHHHHhccchHHH-HHHHHhc-C
Q 017402 232 REKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVL-SILVKCKEGREEMMRVSGCVGV-FVKMLKT-G 308 (372)
Q Consensus 232 ~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~a~~~L-~~L~~~~~~~~~i~~~~g~i~~-L~~ll~~-~ 308 (372)
+..-.|+..|..+..+.+. ..+.+. ++.+...+ ............... ...+.. +..++.. .
T Consensus 573 ersY~~~siLa~ll~~~~~---~~~~~~-----------r~~~~~~l~e~i~~~~~~~~~~~~-~~~f~~~~~~il~~s~ 637 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEK---TTECVF-----------RNSVNELLVEAISRWLTSEIRVIN-DRSFFPRILRILRLSK 637 (699)
T ss_pred hHHHHHHHHHHHHHhCCCc---Cccccc-----------hHHHHHHHHHHhhccCccceeehh-hhhcchhHHHHhcccC
Confidence 5666788888887765443 111111 22222222 222333333332222 223333 5455543 4
Q ss_pred ChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc-cHHHHHHHHHHHHH
Q 017402 309 SSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD-NEKVRRNANNLIQT 364 (372)
Q Consensus 309 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~-~~~v~~~a~~~L~~ 364 (372)
.+..+--|++++.++....+++++.+.+.|+++.+.++-... -..++..+...+..
T Consensus 638 ~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 638 SDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred CCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 556677888999999988899999999999999888876543 55666666665544
No 313
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=86.15 E-value=39 Score=33.79 Aligned_cols=237 Identities=13% Similarity=0.108 Sum_probs=134.2
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCC--hhHHHHHHHHHhcCCCCccccccccccCChHHH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDG--FTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRV 179 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~--~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~l 179 (372)
+.+.+.+-.+.|.+-. +..-+.++..-.++.|+..+. .++ ..+....+..-.-+...+ .+.+++|.|
T Consensus 267 s~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~--~g~a~~~~ltpl~k~~k~ld~~e------yq~~i~p~l 335 (690)
T KOG1243|consen 267 SVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALE--FGDAASDFLTPLFKLGKDLDEEE------YQVRIIPVL 335 (690)
T ss_pred cHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhh--ccccchhhhhHHHHhhhhccccc------cccchhhhH
Confidence 4566666666666522 234555666667777777766 333 233333333333332222 567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCc
Q 017402 180 VAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGA 259 (372)
Q Consensus 180 v~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~ 259 (372)
+++++..|..+|..-+.-+-... +..-..+.. ..++|.+..-+.+.+. .+++.++.++..|+..=.-+ .+.
T Consensus 336 ~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~-d~I~phv~~G~~DTn~-~Lre~Tlksm~~La~kL~~~--~Ln--- 406 (690)
T KOG1243|consen 336 LKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILN-DQIFPHVALGFLDTNA-TLREQTLKSMAVLAPKLSKR--NLN--- 406 (690)
T ss_pred HHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhc-chhHHHHHhhcccCCH-HHHHHHHHHHHHHHhhhchh--hhc---
Confidence 99999999999986665555543 233344555 5799999999999888 99999999888777521111 011
Q ss_pred hHHHHHHHhh------h--HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHH
Q 017402 260 VPILMRLADA------G--LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEIC 331 (372)
Q Consensus 260 v~~L~~ll~~------~--~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 331 (372)
-.+++.+.. + +-+..-+|..++.+. .......-.+.++.+.+++.-...+..+..+++..+...+ ..
T Consensus 407 -~Ellr~~ar~q~d~~~~irtntticlgki~~~l---~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~-~~ 481 (690)
T KOG1243|consen 407 -GELLRYLARLQPDEHGGIRTNTTICLGKIAPHL---AASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD-QS 481 (690)
T ss_pred -HHHHHHHHhhCccccCcccccceeeeccccccc---chhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccc-hh
Confidence 112222211 0 111111112222211 0111111123344555555556678888888887665522 11
Q ss_pred HHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 332 GDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 332 ~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
. +..-+++.+.-+.-+.+..+|..|-.+++.+
T Consensus 482 ~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 482 E--VANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred h--hhhhccccccccccCcccchhhHHHHHHHHH
Confidence 1 1233677777777778888888888777643
No 314
>PLN02189 cellulose synthase
Probab=86.15 E-value=0.43 Score=49.30 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=36.3
Q ss_pred ccccCCcccCC-----Cceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMS-----DPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~-----~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
-.|.||.+-.- +|.+. .||...|+.|++-=.++++..||.|++.+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 37999998533 45443 388889999998777778899999998876
No 315
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=85.93 E-value=30 Score=35.77 Aligned_cols=184 Identities=13% Similarity=0.083 Sum_probs=106.1
Q ss_pred cCChHHHHHHHh----cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 173 EGAVSRVVAALR----FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 173 ~g~i~~lv~~L~----~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
.+.++.+...+. +.+-.-|..|+..+........ +.......|.+-.+++....+.+..+...|+..|..++..-
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l 326 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL 326 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc
Confidence 455555555443 3455556666666665544333 23322224566666666555544478888888888888632
Q ss_pred chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402 249 ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324 (372)
Q Consensus 249 ~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 324 (372)
.....=...+..+.+++-+... .+.++.++-..+. ...-....+.+..++.++++..+......+...-
T Consensus 327 r~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 327 RPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN-------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKL 399 (815)
T ss_pred chhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 2112222335677777777433 4444444443333 1111335677778888899998887666655543
Q ss_pred cCCH-HHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402 325 CCSQ-EICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQT 364 (372)
Q Consensus 325 ~~~~-~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~ 364 (372)
.... .....---.++++.++....+.+..||.+|..++-.
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~ 440 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAA 440 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHH
Confidence 3222 111122224578888888888999999999888753
No 316
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=85.63 E-value=0.7 Score=29.43 Aligned_cols=30 Identities=20% Similarity=0.582 Sum_probs=24.2
Q ss_pred CccccCCcccC--CCceec--CCchHhhHHHHHH
Q 017402 8 DFKCPISLEIM--SDPVIL--SSGHTFDRASIQR 37 (372)
Q Consensus 8 ~~~C~ic~~~~--~~Pv~~--~cgh~~c~~ci~~ 37 (372)
.-.|++|.+.| .|.++. .||-.|.|.|.++
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45799999999 677664 4999999998764
No 317
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.62 E-value=16 Score=39.66 Aligned_cols=162 Identities=11% Similarity=0.068 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc-hh-HHHHhcCchHHHHHHHhh
Q 017402 192 AIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE-NR-KRVVSCGAVPILMRLADA 269 (372)
Q Consensus 192 ~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~-~~-~~i~~~g~v~~L~~ll~~ 269 (372)
..+.++...++.. +.......+.+..++..+.++.. .++..|+++|.++..-+. .. ..-++.|+...+.+---+
T Consensus 795 ~~a~li~~~la~~---r~f~~sfD~yLk~Il~~l~e~~i-alRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dssas 870 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHA---RSFSQSFDPYLKLILSVLGENAI-ALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSAS 870 (1692)
T ss_pred hhHHHHHHHHHhh---hHHHHhhHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhH
Confidence 3444555555433 22222224678888888886666 899999999999987554 22 233454554444432222
Q ss_pred hHHHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhh
Q 017402 270 GLERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE 348 (372)
Q Consensus 270 ~~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~ 348 (372)
-+|.|+.+++.... +++.-.+ ....+.+-+.+.+..+|.++.+++..+|...|+.-.. .+ +...++.-..
T Consensus 871 VREAaldLvGrfvl~~~e~~~q------yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-~~--~cakmlrRv~ 941 (1692)
T KOG1020|consen 871 VREAALDLVGRFVLSIPELIFQ------YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-VD--MCAKMLRRVN 941 (1692)
T ss_pred HHHHHHHHHhhhhhccHHHHHH------HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-HH--HHHHHHHHhc
Confidence 27888888875443 2222111 2334444455667889999999999999876644221 11 1222222223
Q ss_pred cccHHHHHHHHHHHHHHh
Q 017402 349 DDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 349 ~~~~~v~~~a~~~L~~l~ 366 (372)
++...+++-+...+..|+
T Consensus 942 DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 942 DEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred cchhHHHHHHHHHHHHHh
Confidence 333446666666665544
No 318
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.50 E-value=4.6 Score=32.83 Aligned_cols=74 Identities=16% Similarity=0.075 Sum_probs=52.6
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
..+..+..+|++.+.+.|-.++..+..................-+..|+..|+..++..+.+.++.+|..|...
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888888876543332222332357888999999887778888888888877643
No 319
>PLN02436 cellulose synthase A
Probab=85.39 E-value=0.48 Score=49.03 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=36.2
Q ss_pred ccccCCcccC-----CCceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIM-----SDPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~-----~~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
-.|.||.+-. -+|.+. .||...|+.|++-=..+++..||.|++.+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3799999853 245443 388889999997777778889999998876
No 320
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=85.19 E-value=5.6 Score=31.29 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=57.9
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhc------ccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLED------DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~------~~~~v~~~a~~~L~~l~ 366 (372)
++..|.+-+.++++.++..|+.+|-.+..+. .....++.+.+.+..|+.++.. .+..||.+...++..-.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 6777888888999999999999999988764 5677888888899899999853 47899999999887543
No 321
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=85.17 E-value=17 Score=33.84 Aligned_cols=236 Identities=13% Similarity=0.058 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc---CCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402 104 ESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH---SDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV 180 (372)
Q Consensus 104 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv 180 (372)
.++..+...+...+...++.-..+.. ..+..+..+|.+- .....+...++..|..++.....+..+...+.++.++
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 44555666666666543332222221 2445555555421 1223456667777766555444333333344445454
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc-hhHHHHhcCc
Q 017402 181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE-NRKRVVSCGA 259 (372)
Q Consensus 181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~ 259 (372)
+-+ ++=+|+..++.-+.+.. .-.+-+-.-+...+...-+..|...|..|+..-+ ....++- +.
T Consensus 190 e~V-------------I~Pnl~~~e~D~ElfEd--dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~ 253 (370)
T PF08506_consen 190 EKV-------------IFPNLCLREEDEELFED--DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QY 253 (370)
T ss_dssp HHT-------------HHHHHS--HHHHHHHHH--SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHh-------------ccCccCCCHHHHHHHcc--CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HH
Confidence 432 34455554444444333 3344443333322222567788888888885311 1111111 12
Q ss_pred hHHHHHHH-hhh------HHHHHHHHHHHhCCHhHH-------------HHHHhccchHHHHHHHHhcCChhHHHhHHHH
Q 017402 260 VPILMRLA-DAG------LERAVEVLSILVKCKEGR-------------EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFT 319 (372)
Q Consensus 260 v~~L~~ll-~~~------~e~a~~~L~~L~~~~~~~-------------~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 319 (372)
+..++.-. .++ ++.|+.++..|+.-.... ..+.. .-.+|-|. --.+..+-++-.|++.
T Consensus 254 i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~-~~v~peL~-~~~~~~piLka~aik~ 331 (370)
T PF08506_consen 254 IQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS-QHVLPELQ-PDVNSHPILKADAIKF 331 (370)
T ss_dssp HHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH-HHTCHHHH--SS-S-HHHHHHHHHH
T ss_pred HHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH-HHhHHHhc-ccCCCCcchHHHHHHH
Confidence 22222211 111 566888888888754321 11222 11233332 0012344556667766
Q ss_pred HHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHH
Q 017402 320 LSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI 362 (372)
Q Consensus 320 L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L 362 (372)
+...-..-+. ... .++++.++..+.+++..|+..|+.++
T Consensus 332 ~~~Fr~~l~~---~~l-~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 332 LYTFRNQLPK---EQL-LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHGGGS-H---HHH-HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhhCCH---HHH-HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 6665544221 222 34899999999999999999998764
No 322
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=85.00 E-value=0.52 Score=48.88 Aligned_cols=46 Identities=17% Similarity=0.323 Sum_probs=36.4
Q ss_pred ccccCCcccC-----CCceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIM-----SDPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~-----~~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
-.|.||.+-. -+|.+. .||-..||.|++-=.++++..||.|++.+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3799999853 355543 388889999997767788899999998876
No 323
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.83 E-value=1.1 Score=30.06 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=31.8
Q ss_pred CceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHH
Q 017402 20 DPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRS 67 (372)
Q Consensus 20 ~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~ 67 (372)
|..+..-.++||..|.+..+ ...||.|+..+. ....+|...+.+
T Consensus 21 dA~ICtfEcTFCadCae~~l---~g~CPnCGGelv-~RP~RPaa~L~r 64 (84)
T COG3813 21 DARICTFECTFCADCAENRL---HGLCPNCGGELV-ARPIRPAAKLAR 64 (84)
T ss_pred ceeEEEEeeehhHhHHHHhh---cCcCCCCCchhh-cCcCChHHHHhh
Confidence 33444456899999998766 448999999888 777777555443
No 324
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.21 E-value=7.3 Score=30.38 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=56.5
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHHHHHH
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLEDD--NEKVRRNANNLIQTL 365 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~L~~l 365 (372)
++..|-+-|+++++.++..|+.+|-.+..+. .....++.+.+.+..|..++... .+.|++++..++...
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 5677788888899999999999999988874 56778888888999999988863 345999999888643
No 325
>PLN02195 cellulose synthase A
Probab=83.76 E-value=0.76 Score=47.25 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=36.3
Q ss_pred cccCCcccC-----CCceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 10 KCPISLEIM-----SDPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 10 ~C~ic~~~~-----~~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.|.||.+.. -+|.+. .||...||.|++-=.++|+..||.|++.+.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 699999843 366553 489899999997666778899999998877
No 326
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=83.69 E-value=44 Score=32.31 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=50.3
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHH-HHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVS-AVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK 167 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~-~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~ 167 (372)
.....+-|-......+.|..+++-|..+...... + .|+.. .+.+.+..+ ..++--..-+.+|..|+.+...-
T Consensus 29 iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~-~-----~~~~R~~fF~~I~~~-~~~~d~~~~l~aL~~LT~~Grdi 101 (464)
T PF11864_consen 29 IWYAAKDLIDPNQPSEARRAALELLIACIKRQDS-S-----SGLMRAEFFRDISDP-SNDDDFDLRLEALIALTDNGRDI 101 (464)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccc-c-----cHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHcCCcCc
Confidence 3445555555555678899899988888875542 1 22222 233444432 33443445555555565543322
Q ss_pred ccccccCChHHHHHHHh
Q 017402 168 VGLVAEGAVSRVVAALR 184 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~ 184 (372)
...+.+..+.|...|.
T Consensus 102 -~~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 102 -DFFEYEIGPFLLSWLE 117 (464)
T ss_pred -hhcccchHHHHHHHHH
Confidence 3356788888888884
No 327
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=83.57 E-value=0.77 Score=38.63 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=43.4
Q ss_pred CccccCCcccCCCcee-cCCchHhhHHHHHHHHhc-CCCCCCC--CCCCCCCCCCCCccHHHHH
Q 017402 8 DFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDS-GHRTCPI--TKLPLPDQPSLIPNHALRS 67 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~-~~~~CP~--c~~~~~~~~~~~~n~~l~~ 67 (372)
+.+|||..+...-|+. ..|.|.|.+.-|..++.. -...||. |.+... ...+..++-++.
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~-~~~~v~d~IlE~ 251 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEV-VDPYVCDHILEK 251 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchhee-ccchhhhHHHHH
Confidence 4689999999999986 569999999999888763 2346888 766665 555555554443
No 328
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.44 E-value=0.83 Score=39.72 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=23.2
Q ss_pred CchHhhHHHHHHHHhc------------CCCCCCCCCCCCC
Q 017402 26 SGHTFDRASIQRWLDS------------GHRTCPITKLPLP 54 (372)
Q Consensus 26 cgh~~c~~ci~~~~~~------------~~~~CP~c~~~~~ 54 (372)
|....|+.|+.+|+.. ++-+||.||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5556799999999852 4558999999887
No 329
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=83.42 E-value=0.48 Score=29.45 Aligned_cols=39 Identities=33% Similarity=0.734 Sum_probs=23.0
Q ss_pred ccCCcccCC--CceecCCch-----HhhHHHHHHHHhc-CCCCCCCC
Q 017402 11 CPISLEIMS--DPVILSSGH-----TFDRASIQRWLDS-GHRTCPIT 49 (372)
Q Consensus 11 C~ic~~~~~--~Pv~~~cgh-----~~c~~ci~~~~~~-~~~~CP~c 49 (372)
|-||.+.-. +|.+.||+. ..++.|+.+|+.. +...|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 567776533 257777753 2477899999974 45678876
No 330
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.33 E-value=7.8 Score=38.94 Aligned_cols=164 Identities=16% Similarity=0.112 Sum_probs=85.6
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcC---CchHHHHHHHHHHHhhc----
Q 017402 174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNG---KLIREKKEAATALYALT---- 245 (372)
Q Consensus 174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~---- 245 (372)
..+..+..++.++.....+ |..+|..+.... ..- ...+..+..+++.. ..+.+...|+.+++.|.
T Consensus 395 ~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPT------EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCC------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 3677777777765433322 445555554321 111 24566666666542 22356666666666554
Q ss_pred CCC------chhHHHHhcCchHHHHHHHhhh--------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcC---
Q 017402 246 SFP------ENRKRVVSCGAVPILMRLADAG--------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTG--- 308 (372)
Q Consensus 246 ~~~------~~~~~i~~~g~v~~L~~ll~~~--------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~--- 308 (372)
... ......+....++.|...+... .-.++.+|+|+-. ...++.|..++...
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEV 536 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhcccc
Confidence 331 1122223334677777777422 2346788888754 44677777776554
Q ss_pred ChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc--ccHHHHHHHHHHHH
Q 017402 309 SSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLED--DNEKVRRNANNLIQ 363 (372)
Q Consensus 309 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~--~~~~v~~~a~~~L~ 363 (372)
+..+|..|+.+|..++...++. +.+.++.+..+ .+.++|-+|..+|-
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 5677788888888776554433 34455555554 35677777765553
No 331
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.08 E-value=11 Score=36.76 Aligned_cols=147 Identities=17% Similarity=0.166 Sum_probs=87.0
Q ss_pred hccCCChHHHHHHHHHHHH-HhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCC
Q 017402 97 TSKSSPLESKLESLTQLTK-LSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA 175 (372)
Q Consensus 97 ~~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~ 175 (372)
+.+.+.++-...-+..+-+ .--++|+. ..++ .|.+.-+++.+. +.+..++...+.+|.-+...-.......-.|.
T Consensus 58 Kk~~si~dRil~fl~~f~~Y~~~~dpeg-~~~V-~~~~~h~lRg~e--skdk~VR~r~lqila~~~d~v~eIDe~l~N~L 133 (885)
T COG5218 58 KKNPSIPDRILSFLKRFFEYDMPDDPEG-EELV-AGTFYHLLRGTE--SKDKKVRKRSLQILALLSDVVREIDEVLANGL 133 (885)
T ss_pred ccCCCcHHHHHHHHHHHHHhcCCCChhh-hHHH-HHHHHHHHhccc--CcchhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3433444433334443333 22335544 2222 345666667676 78889999999998887644222223344677
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH
Q 017402 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV 255 (372)
Q Consensus 176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 255 (372)
+..|.+-+-+..+.+|..|..+|..+-....+-+ ......|+.+++.+.+.+++..| |.|+..++..+..++
T Consensus 134 ~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-----n~~~n~l~~~vqnDPS~EVRr~a---llni~vdnsT~p~Il 205 (885)
T COG5218 134 LEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-----NRIVNLLKDIVQNDPSDEVRRLA---LLNISVDNSTYPCIL 205 (885)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-----HHHHHHHHHHHhcCcHHHHHHHH---HHHeeeCCCcchhHH
Confidence 7777777767788899999888887753322221 13444677777766554777654 457776666555554
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.83 E-value=2.7 Score=42.73 Aligned_cols=138 Identities=17% Similarity=0.094 Sum_probs=93.3
Q ss_pred HHHHHhhcCCHHHHHHHHhhc------CCChhHHHHHHHHHhcCCCCccccccccc--------cCChHHHHHHHhc---
Q 017402 123 SRRKLTESGAVSAVLNCLKIH------SDGFTLQEKALSLLLNLSLDDDNKVGLVA--------EGAVSRVVAALRF--- 185 (372)
Q Consensus 123 ~~~~i~~~g~i~~L~~lL~~~------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--------~g~i~~lv~~L~~--- 185 (372)
-.+.+.+.+++..++.+.... +...++...|+.+|+.+..-++.+..+.. ..||..++..-.-
T Consensus 593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 456677888888888887531 23467889999999998877777665542 1244444433221
Q ss_pred -CChHHHHHHHHHHHHhcccc-cchhh----------------------------------hccccchHHHHHHHhhcCC
Q 017402 186 -GSPDCRAIAATIITSLAVVE-VNKAT----------------------------------IGDYPYAINALVSLLQNGK 229 (372)
Q Consensus 186 -~~~~~~~~a~~~L~~ls~~~-~~~~~----------------------------------i~~~~g~i~~Lv~ll~~~~ 229 (372)
-|++++..|+..|.|+...+ +++.. .+...++|..|+++|+-..
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~ 752 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN 752 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 27888888888888776544 22111 1112467889999998543
Q ss_pred c----hHHHHHHHHHHHhhcCCCchhHHHHhcCch
Q 017402 230 L----IREKKEAATALYALTSFPENRKRVVSCGAV 260 (372)
Q Consensus 230 ~----~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v 260 (372)
+ ..++..|+.+|.-|+.++..|+.+.+...+
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDTVRQILTKLPLV 787 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccc
Confidence 2 378889999999999999888887766554
No 333
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=82.75 E-value=5 Score=29.01 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=54.3
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
+...+..|.++.+.+|..+...|..|..... ..+....+++..+...++++++ =+--+|..+|..|+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~Ds-yVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDS-YVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHH
Confidence 4556677778889999999999999986655 2333335788888898988877 8999999999998863
No 334
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=82.75 E-value=9.3 Score=30.87 Aligned_cols=140 Identities=13% Similarity=0.086 Sum_probs=76.7
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV 171 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 171 (372)
++..|+.. .+...|.++++.|+.+-.=|| ++....+.+. + ..-.. ..+.................++ ..
T Consensus 15 L~~iLk~e-~s~~iR~E~lr~lGilGALDP-~~~k~~~~~~-~---~~~~~-~~~~~~~~~~l~~~~~~~~~ee----~y 83 (160)
T PF11865_consen 15 LLNILKTE-QSQSIRREALRVLGILGALDP-YKHKSIQKSL-D---SKSSE-NSNDESTDISLPMMGISPSSEE----YY 83 (160)
T ss_pred HHHHHHhC-CCHHHHHHHHHHhhhccccCc-HHHhcccccC-C---ccccc-cccccchhhHHhhccCCCchHH----HH
Confidence 55667665 568999999999999998888 4443222211 1 00000 1111222222211111111222 33
Q ss_pred ccCChHHHHHHHhcCChHH-HHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 172 AEGAVSRVVAALRFGSPDC-RAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 172 ~~g~i~~lv~~L~~~~~~~-~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
-..++..|++.|++.+... ...+..++.++-.....+- ..-...++|.+++.++...+ ..++....-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~-~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPD-SLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCH-HHHHHHHHHHHHH
Confidence 3456888999998764332 3345566655543322222 32224699999999998776 7777766666554
No 335
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.73 E-value=18 Score=35.44 Aligned_cols=113 Identities=13% Similarity=0.080 Sum_probs=72.5
Q ss_pred cCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh
Q 017402 173 EGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR 251 (372)
Q Consensus 173 ~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 251 (372)
.|.+..+++-+.+.+..+|..++.+|.-++..- +.-+.+. .|.+..|.+-+.+... .++.+|+.+|+.+-....+-
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~--N~L~ekl~~R~~DRE~-~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLA--NGLLEKLSERLFDREK-AVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHhcchH-HHHHHHHHHHHHHHhccCCh
Confidence 566777777778889999999999999887433 2223333 3788888888877666 89999999998765433332
Q ss_pred HHHHhcCchHHHHHHHhhh--HHHHHHHHHHHhCCHhHHHHHH
Q 017402 252 KRVVSCGAVPILMRLADAG--LERAVEVLSILVKCKEGREEMM 292 (372)
Q Consensus 252 ~~i~~~g~v~~L~~ll~~~--~e~a~~~L~~L~~~~~~~~~i~ 292 (372)
... .+..|+.+++.+ .|.=-.+|.|+..+...+.-++
T Consensus 167 en~----~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~Il 205 (885)
T COG5218 167 ENR----IVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCIL 205 (885)
T ss_pred HHH----HHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHH
Confidence 222 223556666433 4444445667766544444333
No 336
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=82.34 E-value=14 Score=29.76 Aligned_cols=139 Identities=12% Similarity=0.131 Sum_probs=77.2
Q ss_pred CChHHHHHHHhcC-ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhH
Q 017402 174 GAVSRVVAALRFG-SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRK 252 (372)
Q Consensus 174 g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 252 (372)
..++.|.++|+.+ +.++|..+.++|+.|..-|.++.+... +..+.-. -.+..+ ..... .+.+.... ..-.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~--~~~~~~~--~~~~~~-~~~~~---~l~~~~~~-~~~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQ--KSLDSKS--SENSND-ESTDI---SLPMMGIS-PSSE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccc--ccCCccc--cccccc-cchhh---HHhhccCC-CchH
Confidence 3467788888775 689999999999999888877666333 1111000 001111 11111 11111111 1233
Q ss_pred HHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHH-HHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402 253 RVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGR-EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323 (372)
Q Consensus 253 ~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~-~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 323 (372)
...-..++..|+++|++. ...++.++.++......+ -.+. +..+|.+++.++..++..++.-..-|..+
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344445778888888554 335666666665322111 2222 34789999999877777777655555444
No 337
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=82.18 E-value=1 Score=41.25 Aligned_cols=29 Identities=17% Similarity=0.471 Sum_probs=22.0
Q ss_pred CchHhhHHHHHHHHhc------------CCCCCCCCCCCCC
Q 017402 26 SGHTFDRASIQRWLDS------------GHRTCPITKLPLP 54 (372)
Q Consensus 26 cgh~~c~~ci~~~~~~------------~~~~CP~c~~~~~ 54 (372)
|....|..|+-+||.. ++-.||.||..|.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 3445688999999953 2347999999987
No 338
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=82.15 E-value=28 Score=35.93 Aligned_cols=135 Identities=14% Similarity=0.106 Sum_probs=88.1
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA 181 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~ 181 (372)
+..+...|+..|..++......-..+ ..+..+.+++-+. +....+++.+..++-.... ...-...++.+..
T Consensus 308 N~~v~~~aa~~l~~ia~~lr~~~~~~-~~~v~p~lld~lk--ekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e 378 (815)
T KOG1820|consen 308 NINVVMLAAQILELIAKKLRPLFRKY-AKNVFPSLLDRLK--EKKSELRDALLKALDAILN------STPLSKMSEAILE 378 (815)
T ss_pred chhHHHHHHHHHHHHHHhcchhhHHH-HHhhcchHHHHhh--hccHHHHHHHHHHHHHHHh------cccHHHHHHHHHH
Confidence 56677788888888887543221111 2367788888888 6777777777666655443 1112456788899
Q ss_pred HHhcCChHHHHHHHHHHHHhcccccchhhh-ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402 182 ALRFGSPDCRAIAATIITSLAVVEVNKATI-GDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246 (372)
Q Consensus 182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 246 (372)
+++++++..+..+...+...-........- ....+.++.++....+.+. +++..|..++..+-.
T Consensus 379 ~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~-~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 379 ALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDK-DVRKAALEAVAAVMK 443 (815)
T ss_pred HhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcH-HHHHHHHHHHHHHHH
Confidence 999999999988666555543322211111 1113678888888877777 899998888776543
No 339
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=82.11 E-value=5.3 Score=29.26 Aligned_cols=93 Identities=20% Similarity=0.168 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHh-hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHH
Q 017402 104 ESKLESLTQLTKLSKRDSASRRKLT-ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAA 182 (372)
Q Consensus 104 ~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~ 182 (372)
++|.+|+..|..--...--.-..+. ..+.+..|++-+. ..+....+.++..|..+..++.....+.+-|+...|-++
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFn--f~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~kl 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFN--FPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKL 79 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHH
Confidence 6788888777533322221222232 2344444444444 456668899999999999998888888888988886666
Q ss_pred HhcCChHHHHHHHHHH
Q 017402 183 LRFGSPDCRAIAATII 198 (372)
Q Consensus 183 L~~~~~~~~~~a~~~L 198 (372)
-..-++..+...-.++
T Consensus 80 r~~~~~~~~~~id~il 95 (98)
T PF14726_consen 80 RPNVEPNLQAEIDEIL 95 (98)
T ss_pred HhcCCHHHHHHHHHHH
Confidence 5445555554443333
No 340
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=81.76 E-value=14 Score=37.93 Aligned_cols=176 Identities=18% Similarity=0.169 Sum_probs=102.7
Q ss_pred CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC----------chhHHHH
Q 017402 186 GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP----------ENRKRVV 255 (372)
Q Consensus 186 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~----------~~~~~i~ 255 (372)
|+.+.++.|...+..+...--.|..-.. ..+-..|+.+|++++. -..|+.++.-+.++. +.| .+.
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s-~~ia~klld~Ls~~~~---g~~aa~~fsiim~D~~~~~~r~~~a~~r-iLy 860 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPES-SEIAEKLLDLLSGPST---GSPAAKLFSIIMSDSNPLLKRKGHAEPR-ILY 860 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCccc-chHHHHHHHhcCCccc---cchHHHhhHhhhccChHHhhhccccchh-HHH
Confidence 4555566665555555322111111111 2466677788877543 333333333333222 121 122
Q ss_pred hc----CchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402 256 SC----GAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS 327 (372)
Q Consensus 256 ~~----g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 327 (372)
++ ..+|.|+....+. +-.-+.+|+++-.+-..+.-+-..+...|.|++.+.-.+..++..+..++..+...+
T Consensus 861 kQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 861 KQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 22 4677777777522 445667777777643333333334557888888888888888888888888776654
Q ss_pred HHHHHHHHhcChhHHHHHHhhccc---HHHHHHHHHHHHHHhc
Q 017402 328 QEICGDSRKEGVLDICMGLLEDDN---EKVRRNANNLIQTLSG 367 (372)
Q Consensus 328 ~~~~~~~~~~g~~~~l~~ll~~~~---~~v~~~a~~~L~~l~~ 367 (372)
+....+=+. -++|.++.+-.+.+ -.||..|..+|..|.+
T Consensus 941 ~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 941 ETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTR 982 (1030)
T ss_pred cccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 433332222 27888988888754 5789999999988876
No 341
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=81.55 E-value=0.03 Score=37.65 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=21.3
Q ss_pred CccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+..||.|.+.|.. .-|+.+|..|-.++.. ...||.|++++.
T Consensus 1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE----ETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE----eCCEEECcccccccee--cccCCCcccHHH
Confidence 4689999986432 2367777777765332 347999998776
No 342
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.28 E-value=56 Score=35.87 Aligned_cols=200 Identities=15% Similarity=0.107 Sum_probs=107.4
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRV 179 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~l 179 (372)
....|..|+-.+..++... ++.+.- ...||.|.+.=. +.+..++.....+=..|..++..-..-.-..+++.|
T Consensus 970 ~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~y--DP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQY--DPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDEL 1044 (1702)
T ss_pred hhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhcc--CCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3456667777777777633 233322 135666666655 566667766655555565553322111123456666
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHH---HHHHHhhcC--CC-chhHH
Q 017402 180 VAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEA---ATALYALTS--FP-ENRKR 253 (372)
Q Consensus 180 v~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a---~~aL~~L~~--~~-~~~~~ 253 (372)
+.-|.+.--.+|+.+|.||..|-...+.-+..-........+.+.+.+-.+ .+++.| +.+|..|+. .+ .+-..
T Consensus 1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKE-sVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKE-SVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 666666677789999999999987765544443323455555555555444 555544 445555542 11 11000
Q ss_pred HHhcCchHHHHHHH-hhh--------HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCCh
Q 017402 254 VVSCGAVPILMRLA-DAG--------LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSS 310 (372)
Q Consensus 254 i~~~g~v~~L~~ll-~~~--------~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~ 310 (372)
...+++.++..| +.+ +.-++.++.-|++...+.-.-- .+..++.|......-.+
T Consensus 1124 --~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1124 --GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred --HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHccccch
Confidence 011334444433 222 4558888888888544422111 13456666666554333
No 343
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=81.25 E-value=16 Score=26.71 Aligned_cols=75 Identities=9% Similarity=0.061 Sum_probs=57.5
Q ss_pred HHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402 289 EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQT 364 (372)
Q Consensus 289 ~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~ 364 (372)
..+....+.+..|++-....+...++.++..|..+..+ +.....+.+-|+...|-.+-.+-++..+....+++..
T Consensus 23 ~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 23 EDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 34444345566666666666667888999999999887 8888999999999998888777788888888777754
No 344
>PRK14707 hypothetical protein; Provisional
Probab=81.18 E-value=1.1e+02 Score=35.21 Aligned_cols=267 Identities=17% Similarity=0.179 Sum_probs=146.6
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV 171 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 171 (372)
|...|++.+...... +|+.-|.........-+..+. .--+..+++-+.+-.++.+.+..+..+...++.++..+..+
T Consensus 126 ~~n~~sk~~~~~~c~-~a~a~i~~~~~~~~~~~~~l~-~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~- 202 (2710)
T PRK14707 126 FLNAFSKNLDSGRCE-RAVARLARHLRREDKARQTLN-AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM- 202 (2710)
T ss_pred HHHHHhcCCCchHHH-HHHHHHHHHhccccchhhhhc-cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-
Confidence 445666665444444 444444433332221222221 12366677777654466777777777777787777655544
Q ss_pred ccCChHHHHHHHhc--CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh-hcCCC
Q 017402 172 AEGAVSRVVAALRF--GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA-LTSFP 248 (372)
Q Consensus 172 ~~g~i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~-L~~~~ 248 (372)
...+|..++.-++. +++..+..+...-..++.....+..+- ...+-..++.|..-.+..+-..|+.+|.. ++.+.
T Consensus 203 ~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~--~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~ 280 (2710)
T PRK14707 203 DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELK--PQELGNALNALSKWADTPVCAAAASALAERLVDDP 280 (2710)
T ss_pred chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCC--hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH
Confidence 56677777777776 567777666666666665544444443 34566666666654332677777777764 55433
Q ss_pred chhHHHHhcCchHHHHHHHh----hh--HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHH
Q 017402 249 ENRKRVVSCGAVPILMRLAD----AG--LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLS 321 (372)
Q Consensus 249 ~~~~~i~~~g~v~~L~~ll~----~~--~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~ 321 (372)
.- .+-...-.+...+.-|. .. .+.+..+...|..+++-+..+-. -.+...+..++. .+..+...|+.+|.
T Consensus 281 ~l-~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~--~~~~~~LNalsKWpd~~~C~~Aa~~LA 357 (2710)
T PRK14707 281 GL-RKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNA--RGLSTALNALSKWPDNPVCAAAVSALA 357 (2710)
T ss_pred HH-HHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccch--HHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence 33 33333333444444441 11 44555666667765555543332 345555566643 55555555555554
Q ss_pred H-HhcCCHHHHHHHHhcChhHHHHHHhhcc-cHHHHHHHHHHHHHHhc
Q 017402 322 C-LCCCSQEICGDSRKEGVLDICMGLLEDD-NEKVRRNANNLIQTLSG 367 (372)
Q Consensus 322 ~-l~~~~~~~~~~~~~~g~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~ 367 (372)
. ++. +++.++.+--.|+-..|=.+.+=. ++..+..|..+-..+.+
T Consensus 358 ~rl~~-d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~ 404 (2710)
T PRK14707 358 ERLVA-DPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVD 404 (2710)
T ss_pred HHhcc-CHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhcc
Confidence 4 554 488888877666555555555533 44444444444344443
No 345
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=81.18 E-value=47 Score=31.62 Aligned_cols=182 Identities=15% Similarity=0.097 Sum_probs=102.7
Q ss_pred HHHHHHHHhhcCC--ChhHHHHHHHHHhc-CCCCccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccch
Q 017402 133 VSAVLNCLKIHSD--GFTLQEKALSLLLN-LSLDDDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNK 208 (372)
Q Consensus 133 i~~L~~lL~~~~~--~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~ 208 (372)
.+.+.++|+..++ ..+-+..|+.-|.. ++.+...-..=.-...+..+++.|++ .+...+..|.++|..+..+...+
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 3444455553222 33445666664444 44432221110112345678888877 68888999999999998776544
Q ss_pred hhhccccchHHHHHHHhhcCCchHHHHHHHHH-HHhhcCCCchhHHHHhcCchHHHHHHH-hhhHHH---HHHHHHHHhC
Q 017402 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATA-LYALTSFPENRKRVVSCGAVPILMRLA-DAGLER---AVEVLSILVK 283 (372)
Q Consensus 209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a-L~~L~~~~~~~~~i~~~g~v~~L~~ll-~~~~e~---a~~~L~~L~~ 283 (372)
..=.. .-+|..+++.-.+..+ .+...|... +.-+++...-.... .+..++ ..+.+. ++..+..++.
T Consensus 365 l~Dst-E~ai~K~Leaa~ds~~-~v~~~Aeed~~~~las~~P~~~I~-------~i~~~Ilt~D~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 365 LFDST-EIAICKVLEAAKDSQD-EVMRVAEEDCLTTLASHLPLQCIV-------NISPLILTADEPRAVAVIKMLTKLFE 435 (516)
T ss_pred hhchH-HHHHHHHHHHHhCCch-hHHHHHHHHHHHHHHhhCchhHHH-------HHhhHHhcCcchHHHHHHHHHHHHHh
Confidence 33222 3577777777777666 566666554 44566654322211 122222 122222 3344444444
Q ss_pred C--HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhc
Q 017402 284 C--KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC 325 (372)
Q Consensus 284 ~--~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 325 (372)
. .+.-..++ ....|.+++.-.+.+..+|..|+.+|..+..
T Consensus 436 ~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 436 RLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 2 11112222 3478888888888889999999999888764
No 346
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.11 E-value=0.97 Score=39.17 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=29.3
Q ss_pred CCCccccCCcccCCCceecCC----chHhhHHHHHHHHhc
Q 017402 6 PDDFKCPISLEIMSDPVILSS----GHTFDRASIQRWLDS 41 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~c----gh~~c~~ci~~~~~~ 41 (372)
...++|.+|.+.+.|--...| .|.||..|-.+.++.
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 355999999999999976655 699999998777753
No 347
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=80.94 E-value=39 Score=29.77 Aligned_cols=185 Identities=15% Similarity=0.113 Sum_probs=107.8
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccc-hHHHHHHHhhcC---CchHHHHHHHHHHHhhcCCCchh
Q 017402 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY-AINALVSLLQNG---KLIREKKEAATALYALTSFPENR 251 (372)
Q Consensus 176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-~i~~Lv~ll~~~---~~~~~~~~a~~aL~~L~~~~~~~ 251 (372)
+..+.+++.....+.+--+.-++.-+..+...-..+....+ ....+..++... .....+.-++++++|+..++.++
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 45555555555555566677777777766655444433222 345555555443 23478888999999999999999
Q ss_pred HHHHhc-C-chHHHHHHH-hh----h---HHHHHHHHHHHhCCHhHHHHHHhc--cchHHHHHHHHhc--CChhHHHhHH
Q 017402 252 KRVVSC-G-AVPILMRLA-DA----G---LERAVEVLSILVKCKEGREEMMRV--SGCVGVFVKMLKT--GSSRAVQCSL 317 (372)
Q Consensus 252 ~~i~~~-g-~v~~L~~ll-~~----~---~e~a~~~L~~L~~~~~~~~~i~~~--~g~i~~L~~ll~~--~~~~~~~~a~ 317 (372)
..+.+. + .+-..+..+ .+ . +-.+..++.|++..-..... -.. ...+..+.+.+.. .+++..-.++
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~-~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS-DEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS--CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 888765 3 233332222 21 1 33356667777663211110 000 0134445553322 5778888999
Q ss_pred HHHHHHhcCCHHHHHHHHhcChhHHHHHHhh-cccHHHHHHHHHH
Q 017402 318 FTLSCLCCCSQEICGDSRKEGVLDICMGLLE-DDNEKVRRNANNL 361 (372)
Q Consensus 318 ~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~-~~~~~v~~~a~~~ 361 (372)
.+|+++...++.........|+...+..... ...+++++-+..+
T Consensus 224 vAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 224 VALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 9999999776666555555676666655554 3577888777654
No 348
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=80.59 E-value=0.98 Score=34.80 Aligned_cols=42 Identities=19% Similarity=0.525 Sum_probs=30.1
Q ss_pred CccccCCcccCCC--cee-cCCc------hHhhHHHHHHHHhcCCCCCCCCC
Q 017402 8 DFKCPISLEIMSD--PVI-LSSG------HTFDRASIQRWLDSGHRTCPITK 50 (372)
Q Consensus 8 ~~~C~ic~~~~~~--Pv~-~~cg------h~~c~~ci~~~~~~~~~~CP~c~ 50 (372)
...|.||.+...+ -|+ ++|| |.||..|+.+|-.+ ...-|.=|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR 76 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNR 76 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCccc
Confidence 6779999998776 554 5665 56999999999643 34455543
No 349
>PLN02400 cellulose synthase
Probab=80.44 E-value=0.73 Score=47.90 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=36.0
Q ss_pred ccccCCcccC-----CCceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIM-----SDPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~-----~~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
-.|.||.+-. -+|.+. .|+-..||.|++-=.++++..||.|++.+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3799999853 255543 488889999997666778889999998877
No 350
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=79.66 E-value=5.9 Score=40.51 Aligned_cols=137 Identities=16% Similarity=0.102 Sum_probs=91.3
Q ss_pred CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchh
Q 017402 131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKA 209 (372)
Q Consensus 131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~ 209 (372)
.++|.+++... +.....+..-+.+|.++-.+-.-...+-+ ...+|.|++.|+-.|..+|..+...+.-+....+.-.
T Consensus 867 ~ivP~l~~~~~--t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFE--TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhc--cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 57888888887 45555555556666554433211111112 5678999999988999999888888877654332222
Q ss_pred hhccccchHHHHHHHhhcCCc--hHHHHHHHHHHHhhcC-CCchhHHHHhcCchHHHHHHHhhh
Q 017402 210 TIGDYPYAINALVSLLQNGKL--IREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLADAG 270 (372)
Q Consensus 210 ~i~~~~g~i~~Lv~ll~~~~~--~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~ 270 (372)
.--- ...+|.++.+-++.++ ..++..|+.+|..|.. .|...-.-.+-.++..|.+.|++.
T Consensus 945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK 1007 (1030)
T ss_pred hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH
Confidence 1111 2588888888777653 4789999999999998 555444555556788888888665
No 351
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=79.53 E-value=70 Score=31.92 Aligned_cols=158 Identities=14% Similarity=0.092 Sum_probs=92.1
Q ss_pred CCChhHHHHHHHHHhcCCCCccccccccc----cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHH
Q 017402 144 SDGFTLQEKALSLLLNLSLDDDNKVGLVA----EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAIN 219 (372)
Q Consensus 144 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~----~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~ 219 (372)
....+.+--|+.+|+.+..+...-..+.. ...+..++..+. +++.-+..+++.|.|+-.+..++..+.....-+.
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESIL 633 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Confidence 46677888888888887776443332222 335555555554 5677788899999999777666666544222222
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHhhcC--CCchhHHHHhcCchHHHHHHHhhh------HH---HHHHHHHHHhCCHhHH
Q 017402 220 ALVSLLQNGKLIREKKEAATALYALTS--FPENRKRVVSCGAVPILMRLADAG------LE---RAVEVLSILVKCKEGR 288 (372)
Q Consensus 220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~~i~~~g~v~~L~~ll~~~------~e---~a~~~L~~L~~~~~~~ 288 (372)
..+.-.++.++..++...+....|++. ...+- +.|+.+.|..++... .| +++.+|.+|+..+...
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 222223333332333333333334432 22111 246666666666322 23 4678899999988888
Q ss_pred HHHHhccchHHHHHHHHhc
Q 017402 289 EEMMRVSGCVGVFVKMLKT 307 (372)
Q Consensus 289 ~~i~~~~g~i~~L~~ll~~ 307 (372)
.++.. .-.+..+++-++.
T Consensus 710 ~~~A~-~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 710 IQLAK-NRSVDSIAKKLKE 727 (745)
T ss_pred HHHHH-hcCHHHHHHHHHH
Confidence 88887 4567777777754
No 352
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=79.49 E-value=1.1 Score=46.55 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=36.6
Q ss_pred CccccCCcccC-----CCceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIM-----SDPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~-----~~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.-.|.||.+-. -+|.+. .|+...|+.|++-=..+++..||.|++.+.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 35699999853 356543 388889999997666778889999998876
No 353
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.27 E-value=20 Score=37.91 Aligned_cols=156 Identities=18% Similarity=0.157 Sum_probs=88.0
Q ss_pred ChHHHHHHHhc----CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCch
Q 017402 175 AVSRVVAALRF----GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPEN 250 (372)
Q Consensus 175 ~i~~lv~~L~~----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 250 (372)
..|.+++..++ ++++++..|.-+|..+...+ ..+.+ ...|.|+..+....++.++-++..+++.++..-.|
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fce--s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCE--SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHH--HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 34445555533 46778888888887775433 12222 35777777777544447777888888777653322
Q ss_pred hHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402 251 RKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC 326 (372)
Q Consensus 251 ~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 326 (372)
. ++ -.-+.|...|.+. ++.|+.+|++|-.. .++...|.++-.+..+.++++.++..|-...-.|+..
T Consensus 995 l---ie-~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 995 L---IE-PWTEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred c---cc-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 1 11 0112344444222 56677777777653 2333367777777777777777766666666555543
Q ss_pred CHHHHHHHHhcChhHHHHHHhhcc
Q 017402 327 SQEICGDSRKEGVLDICMGLLEDD 350 (372)
Q Consensus 327 ~~~~~~~~~~~g~~~~l~~ll~~~ 350 (372)
+ ..+. +++|-++.-|.++
T Consensus 1066 ~----n~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1066 G----NTIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred c----cchh--hhchHHHHhhccC
Confidence 1 2222 2455555555554
No 354
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.18 E-value=1.8 Score=34.70 Aligned_cols=45 Identities=22% Similarity=0.544 Sum_probs=30.9
Q ss_pred cccCCcccCC-----Cce--ecCCchHhhHHHHHHHHhc-----CC-----CCCCCCCCCCC
Q 017402 10 KCPISLEIMS-----DPV--ILSSGHTFDRASIQRWLDS-----GH-----RTCPITKLPLP 54 (372)
Q Consensus 10 ~C~ic~~~~~-----~Pv--~~~cgh~~c~~ci~~~~~~-----~~-----~~CP~c~~~~~ 54 (372)
-|.||.-+-- |.+ -+.||..|+.-|+..|++. .. ..||.|..++.
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 3667765422 222 1479999999999999973 11 36999987765
No 355
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=79.05 E-value=11 Score=29.68 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=56.2
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhcc-cHH---HHHHHHHHHHHH
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLEDD-NEK---VRRNANNLIQTL 365 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~~-~~~---v~~~a~~~L~~l 365 (372)
++..|.+-|.++++.++..|+.+|-.+..+. +....++.+...+..|..++.+. ... ||+++..+|...
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 5777888888899999999999999988876 57777887778899999988763 333 899999888654
No 356
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.78 E-value=64 Score=30.99 Aligned_cols=251 Identities=12% Similarity=-0.004 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCC---hHHH
Q 017402 103 LESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA---VSRV 179 (372)
Q Consensus 103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~---i~~l 179 (372)
...|..|++.|.+.+.+-|.-...... -.+..++.-|.+ ..+.+++..++.+|..+...-.+.. +..+. .-.+
T Consensus 272 a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D-~~~~~V~leam~~Lt~v~~~~~~~~--l~~~~l~ialrl 347 (533)
T KOG2032|consen 272 AKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYD-DLNEEVQLEAMKCLTMVLEKASNDD--LESYLLNIALRL 347 (533)
T ss_pred hHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHhhhhcc--hhhhchhHHHHH
Confidence 467888999999999875644444433 345566666653 3568899999999888765433333 12233 3345
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcccccchhhhccc---cchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHh
Q 017402 180 VAALRFGSPDCRAIAATIITSLAVVEVNKATIGDY---PYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVS 256 (372)
Q Consensus 180 v~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~---~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~ 256 (372)
..+..+.+++.+.+|..++..|+..-..+..+... .+...+|+-.+++.. .-...|++.....+.-.-.++...
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~--p~va~ACr~~~~~c~p~l~rke~~- 424 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN--PYVARACRSELRTCYPNLVRKELY- 424 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC--hHHHHHHHHHHHhcCchhHHHHHH-
Confidence 55667789999999999999888765444333221 122223333334433 345566776666665443333222
Q ss_pred cCchHHHHHHHhhhHHHHHHH--HHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcC-CHHHHHH
Q 017402 257 CGAVPILMRLADAGLERAVEV--LSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC-SQEICGD 333 (372)
Q Consensus 257 ~g~v~~L~~ll~~~~e~a~~~--L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~ 333 (372)
+.++..++.... .-.+..- --.|...-..+..+. ......++++.-+.+++.|...-.+.-.+ .+..+..
T Consensus 425 -~~~q~~ld~~~~-~~q~Fyn~~c~~L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~ 497 (533)
T KOG2032|consen 425 -HLFQESLDTDMA-RFQAFYNQWCIQLNHIHPDILMLL-----LTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSS 497 (533)
T ss_pred -HHHhhhhHHhHH-HHHHHHHHHHHHHhhhCHHHHHHH-----HHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 122222111000 0000000 000111000000000 11111222223344444444333333222 1233333
Q ss_pred HHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 334 SRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 334 ~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
.-..-....+..+.++.-+++++.|.++|..+..
T Consensus 498 ~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 498 ADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred hhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 2223356667777788899999999999987654
No 357
>PRK14707 hypothetical protein; Provisional
Probab=78.68 E-value=1.3e+02 Score=34.64 Aligned_cols=262 Identities=15% Similarity=0.119 Sum_probs=146.2
Q ss_pred HHHHhhccCCChHHHHHHHHHH-HHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQL-TKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL 170 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 170 (372)
++.-+++-.++.+.+. ++..| ..++. ++..++.+ +..+|..+++-+.+=.+++..+..+...-.-++.++.-+..
T Consensus 168 llNafSKw~~~~~c~~-aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~- 243 (2710)
T PRK14707 168 ALNAFSKWSDNPDCQA-VAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE- 243 (2710)
T ss_pred HHHHhhcCCCCchHHH-HHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh-
Confidence 4455555555666664 55555 45555 45567666 45567777777764224455554444444456655444333
Q ss_pred cccCChHHHHHHHhc-CC-hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH-hhcCC
Q 017402 171 VAEGAVSRVVAALRF-GS-PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALY-ALTSF 247 (372)
Q Consensus 171 ~~~g~i~~lv~~L~~-~~-~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~-~L~~~ 247 (372)
.+..++-..+..|+. .+ +.....+..+=..++.....+..+.. ..+...++-|+.=.+..+-..|+..|. .|..+
T Consensus 244 ~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~--q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d 321 (2710)
T PRK14707 244 LKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDP--INVTQALNALSKWADLPVCAEAAIALAERLADD 321 (2710)
T ss_pred CChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCH--HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhcc
Confidence 345556666666665 33 44444444444455544444444433 345555565655333255555555555 46665
Q ss_pred CchhHHHHhcCchHHHHHHHh----hh--HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHh-cCChhHHHhHHHHH
Q 017402 248 PENRKRVVSCGAVPILMRLAD----AG--LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLK-TGSSRAVQCSLFTL 320 (372)
Q Consensus 248 ~~~~~~i~~~g~v~~L~~ll~----~~--~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L 320 (372)
++-++.+ +.-.+...+.-|. .. .+.+..+...|+.+++-+..+-. .++...+..+. ..+......|+..|
T Consensus 322 ~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~--q~~a~~lNalsKWp~~~~c~~aa~~L 398 (2710)
T PRK14707 322 PELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP--QGVSSVLNALSKWPDTPVCAAAASAL 398 (2710)
T ss_pred Hhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch--hHHHHHHhhhhcCCCchHHHHHHHHH
Confidence 5544333 3334455555552 11 45566666677777777666554 35666666664 46666666666666
Q ss_pred HHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHH
Q 017402 321 SCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI 362 (372)
Q Consensus 321 ~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L 362 (372)
..=...+++.++.|-..|+-..|=.+.+=.+..+-..|+..|
T Consensus 399 A~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 399 AEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred HHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 664446688888877777666666666555555555555444
No 358
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.54 E-value=22 Score=37.68 Aligned_cols=132 Identities=17% Similarity=0.119 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402 101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV 180 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv 180 (372)
++|+.+..|.-+|.++.--+.++... -+|.|+..+.. +.++-++.++.-++..|+.--++-. .-.-+.|-
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimek-sp~p~IRsN~VvalgDlav~fpnli----e~~T~~Ly 1004 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEK-SPSPRIRSNLVVALGDLAVRFPNLI----EPWTEHLY 1004 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhc-CCCceeeecchheccchhhhccccc----chhhHHHH
Confidence 57888988888888887655544322 37889999976 4788899999999988876522211 22335577
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
+.|.+.++.+|+.|..+|.+|-..+ +|.- .|-+..+..++.+++. +++..|=.....|+...
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILnd----miKV-KGql~eMA~cl~D~~~-~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILND----MIKV-KGQLSEMALCLEDPNA-EISDLAKSFFKELSSKG 1066 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhh----hhHh-cccHHHHHHHhcCCcH-HHHHHHHHHHHHhhhcc
Confidence 7778889999999999999997644 3333 5889999999988877 77777766666666533
No 359
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=78.53 E-value=8.7 Score=29.95 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=55.2
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL 162 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~ 162 (372)
.+...|.++ ++.++..|+..|..+... ...+...+...+++..|+.++......+.++..++..+..-+.
T Consensus 41 ~l~krl~~~--n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 41 LLKKRLNNK--NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 466677754 899999999999999876 4668888888999999999998543344489999998877543
No 360
>PF14353 CpXC: CpXC protein
Probab=78.35 E-value=1.5 Score=33.91 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=28.7
Q ss_pred CccccCCcccCCCceecCCchHhhHHHHHHHHhcC--CCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSG--HRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~--~~~CP~c~~~~~ 54 (372)
+.+||-|...+.-.+-..-.-.....-.++.+... ..+||.|+..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 36899999988766543322222233444444321 348999998876
No 361
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.24 E-value=66 Score=30.89 Aligned_cols=161 Identities=14% Similarity=0.023 Sum_probs=95.4
Q ss_pred hcCCHHHHHHHHhh--cCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccc
Q 017402 129 ESGAVSAVLNCLKI--HSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFG-SPDCRAIAATIITSLAVVE 205 (372)
Q Consensus 129 ~~g~i~~L~~lL~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~ 205 (372)
+.|.+..++..+.. .+.+..++..|++.|.|.+..-..+..-...-.+..++.-|.++ +.++...+...|..+...-
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 45777776666643 23456789999999999988722222112234566677666554 6788888888887776443
Q ss_pred cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC--CchhHHHHhc--CchHHHHHHHhhh---HHHHHHHH
Q 017402 206 VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF--PENRKRVVSC--GAVPILMRLADAG---LERAVEVL 278 (372)
Q Consensus 206 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~--~~~~~~i~~~--g~v~~L~~ll~~~---~e~a~~~L 278 (372)
.+...-.-.-.+.-.+..+..+.++ +.+..|..+...|+.. ...+..+.+. +...+++-.+... .-.|+...
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~-~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~ 410 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDD-KMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSE 410 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcCh-hhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHH
Confidence 3333321112355566677777777 8898888888887763 3344455432 2333444444333 45566666
Q ss_pred HHHhCCHhHHHH
Q 017402 279 SILVKCKEGREE 290 (372)
Q Consensus 279 ~~L~~~~~~~~~ 290 (372)
...|.-.-.++.
T Consensus 411 ~~~c~p~l~rke 422 (533)
T KOG2032|consen 411 LRTCYPNLVRKE 422 (533)
T ss_pred HHhcCchhHHHH
Confidence 656554444443
No 362
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=78.24 E-value=1.2 Score=39.19 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=27.3
Q ss_pred cccCCcccCCCc-eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 10 KCPISLEIMSDP-VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 10 ~C~ic~~~~~~P-v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+|--|.....-- ..++|.|.||..|-.. .....||.|...+.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~---~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS---DSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc---CccccCcCcccHHH
Confidence 466665433222 3579999999999642 22457999976654
No 363
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=75.63 E-value=0.48 Score=28.98 Aligned_cols=36 Identities=22% Similarity=0.459 Sum_probs=22.4
Q ss_pred CCCceecCCc-hHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 18 MSDPVILSSG-HTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 18 ~~~Pv~~~cg-h~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
|.+--.+.|. |..|..|+...+.. ...||.|+.+++
T Consensus 10 f~~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LP 46 (50)
T PF03854_consen 10 FANKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLP 46 (50)
T ss_dssp S--SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE--
T ss_pred hcCCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCc
Confidence 4444455554 88899999887765 667999998886
No 364
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=74.54 E-value=2.1 Score=28.30 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=9.3
Q ss_pred HhhHHHHHHHHhc
Q 017402 29 TFDRASIQRWLDS 41 (372)
Q Consensus 29 ~~c~~ci~~~~~~ 41 (372)
.|||.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999964
No 365
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=74.52 E-value=77 Score=29.78 Aligned_cols=103 Identities=14% Similarity=0.033 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc---CCChhHHHHHHHHHhcCCCC-ccccc-cccccCChH
Q 017402 103 LESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH---SDGFTLQEKALSLLLNLSLD-DDNKV-GLVAEGAVS 177 (372)
Q Consensus 103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~~~~~~~a~~~L~~l~~~-~~~~~-~i~~~g~i~ 177 (372)
.++..+|++.|.|+...+...+..+.+...+..+.+.+... .-..++...=++.|.-+..- .+.|. .+...+|++
T Consensus 111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~ 190 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE 190 (532)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence 47889999999999999999999999998888888777531 11233444555555444322 34444 455689999
Q ss_pred HHHHHHhcC---------C------hHHHHHHHHHHHHhcccc
Q 017402 178 RVVAALRFG---------S------PDCRAIAATIITSLAVVE 205 (372)
Q Consensus 178 ~lv~~L~~~---------~------~~~~~~a~~~L~~ls~~~ 205 (372)
.+..+|.+. + .+....+..+++|+..+.
T Consensus 191 ~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 191 LLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 999999641 1 123345667777887654
No 366
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.13 E-value=25 Score=35.43 Aligned_cols=112 Identities=10% Similarity=-0.038 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA 181 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~ 181 (372)
+.++|+.|+.+|.-.+..+++ .++..+.+|.. +-++.++.-++.+|.-.+.+..+++.+ ..|=.
T Consensus 568 nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLse-s~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLep 631 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSE-SYNPHVRYGAAMALGIACAGTGLKEAI------NLLEP 631 (929)
T ss_pred chHHHHHHHHHheeeEecChh---------hchHHHHHHhh-hcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhh
Confidence 344555555555554444442 24667777764 367788888888888777766665542 22222
Q ss_pred HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc
Q 017402 182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL 230 (372)
Q Consensus 182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~ 230 (372)
+.++...=+|..|+-++..+.... +-..--...++.+.+.+.+.+.++
T Consensus 632 l~~D~~~fVRQgAlIa~amIm~Q~-t~~~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 632 LTSDPVDFVRQGALIALAMIMIQQ-TEQLCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred hhcChHHHHHHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHhhhhhh
Confidence 223334446666666666554322 111111224677788888887766
No 367
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=73.83 E-value=12 Score=29.50 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=57.7
Q ss_pred cCChHHHHHHHhcCChHHHHHHHHHHHHhcccc--cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402 173 EGAVSRVVAALRFGSPDCRAIAATIITSLAVVE--VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246 (372)
Q Consensus 173 ~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 246 (372)
..++..|.+-|.++++.++..|..+|-.+..+- .....+.. .+.+..|+.++....++.++..++..+.+-+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS-REFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 346778888888899999999999998888763 34555666 69999999999865445899999988887653
No 368
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=73.10 E-value=4.5 Score=25.85 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=28.6
Q ss_pred cccCCcccCC----CceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 10 KCPISLEIMS----DPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 10 ~C~ic~~~~~----~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.|--|..-+. +..+-+--.|||..|.+..+ ...||.|+..+.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l---~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML---NGVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh---cCcCcCCCCccc
Confidence 3666665443 22333344689999999876 447999998876
No 369
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=73.03 E-value=1.4 Score=38.60 Aligned_cols=47 Identities=21% Similarity=0.425 Sum_probs=34.4
Q ss_pred CccccCCcccCC-Cc-ee-cCCchHhhHHHHHHHHhc----------------------CCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMS-DP-VI-LSSGHTFDRASIQRWLDS----------------------GHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~-~P-v~-~~cgh~~c~~ci~~~~~~----------------------~~~~CP~c~~~~~ 54 (372)
.-.|.||+.=|. .| .+ +.|.|-|.-.|+.+++.. ....||+||..+.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 456999997654 44 33 579999999999888752 1125999998776
No 370
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=72.85 E-value=17 Score=28.33 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=56.3
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcCh-HHHHHHhhcCCHHHHHHHHhhc-CCChhHHHHHHHHHhcCCCC
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDS-ASRRKLTESGAVSAVLNCLKIH-SDGFTLQEKALSLLLNLSLD 163 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~~~a~~~L~~l~~~ 163 (372)
..|...|+++ ++.++..|+..|..+..... .+...+....++..|++++... ..+..++..++..|.+.+..
T Consensus 40 raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 40 RAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3466677765 89999999999999987654 3788888878888899999742 35778999999999886543
No 371
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=72.51 E-value=30 Score=25.96 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=52.4
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHh------hcccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLL------EDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll------~~~~~~v~~~a~~~L~~l~ 366 (372)
++..|.+-|.+.++.+...|+.+|-.+..++ +....++.+...+..++.+. ...+..||+++..++....
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 5667777777888999999999999998765 46777777776666665431 1237899999999987654
No 372
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=72.26 E-value=3.4 Score=30.73 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=30.0
Q ss_pred CccccCCcccCCCceec--------CC---chHhhHHHHHHHHhc--------CCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVIL--------SS---GHTFDRASIQRWLDS--------GHRTCPITKL 51 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~--------~c---gh~~c~~ci~~~~~~--------~~~~CP~c~~ 51 (372)
.-+|-.|.+.-.++.+. .| .-.||..|+..+..+ ....||.|+.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 34677787765555543 24 556999999888753 2357999876
No 373
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=71.46 E-value=14 Score=28.96 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=54.3
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcC-hHHHHHHhhcCCHHHHHHHHhhcCCChh--HHHHHHHHHhcCC
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRD-SASRRKLTESGAVSAVLNCLKIHSDGFT--LQEKALSLLLNLS 161 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~--~~~~a~~~L~~l~ 161 (372)
.+...|.++ ++.++..|+..|..+.... +.++..+....++..|..++......+. +++.++..|...+
T Consensus 46 ~l~krl~~~--~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 46 ALRKRLKHG--NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHTTS--SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 355667764 8999999999999998865 6788888888999999999985433343 8999998887643
No 374
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=71.37 E-value=3.5 Score=41.17 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=33.9
Q ss_pred CCCCccccCCcccCCCce----ecC---CchHhhHHHHHHHHhcC-----CCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPV----ILS---SGHTFDRASIQRWLDSG-----HRTCPITKL 51 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv----~~~---cgh~~c~~ci~~~~~~~-----~~~CP~c~~ 51 (372)
..+..+|++|..-+.+|+ ..+ |+|.||..||..|..+- ...|+.|..
T Consensus 93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 345678999998888865 223 99999999999998641 234666643
No 375
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=71.29 E-value=1.3e+02 Score=30.81 Aligned_cols=123 Identities=21% Similarity=0.122 Sum_probs=79.4
Q ss_pred cCCHHHHHHHHhhcC------CChhHHHHHHHHHhcCCC--C-ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 017402 130 SGAVSAVLNCLKIHS------DGFTLQEKALSLLLNLSL--D-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITS 200 (372)
Q Consensus 130 ~g~i~~L~~lL~~~~------~~~~~~~~a~~~L~~l~~--~-~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ 200 (372)
.|+++.+.+.|.... ++.--.+.|++.+.++.. . +.--+.+.+.=.++.++-.+++..--.+..||..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 588999999994211 122234667777766543 2 2222233344455556666677777788889999988
Q ss_pred hcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHh
Q 017402 201 LAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVS 256 (372)
Q Consensus 201 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~ 256 (372)
++. +.+..-.. ..+.+...+.+++.+- .++..|+.||.-+-.+++...++.+
T Consensus 487 ~ee--Dfkd~~il-l~aye~t~ncl~nn~l-pv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 487 IEE--DFKDNGIL-LEAYENTHNCLKNNHL-PVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHH--hcccchHH-HHHHHHHHHHHhcCCc-chhhhHHHHHHHHHhchhhhHHHHh
Confidence 843 33333222 3577888888888665 8899999999888777766666554
No 376
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.21 E-value=5.7 Score=31.49 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=66.3
Q ss_pred CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC--ccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccc
Q 017402 131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD--DDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVN 207 (372)
Q Consensus 131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~ 207 (372)
.++..|.+-|. +.++.++..|+..|-.+..+ ......|.+...+..|++++.. .+..++......+...+....+
T Consensus 37 ~a~ral~KRl~--~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 37 DCLKAIMKRLN--HKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 34566666676 67888999999999888776 4456677788899999999987 6899999999999988754432
Q ss_pred hhhhccccchHHHHHHHhhc
Q 017402 208 KATIGDYPYAINALVSLLQN 227 (372)
Q Consensus 208 ~~~i~~~~g~i~~Lv~ll~~ 227 (372)
... -+.|..+.+.|+.
T Consensus 115 ~~~----l~~i~~~y~~L~~ 130 (144)
T cd03568 115 DPS----LSLMSDLYKKLKN 130 (144)
T ss_pred Ccc----cHHHHHHHHHHHH
Confidence 221 2445556555554
No 377
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=71.10 E-value=2.8 Score=31.33 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCC
Q 017402 43 HRTCPITKLPLP 54 (372)
Q Consensus 43 ~~~CP~c~~~~~ 54 (372)
+-.||.|+..+.
T Consensus 26 PivCP~CG~~~~ 37 (108)
T PF09538_consen 26 PIVCPKCGTEFP 37 (108)
T ss_pred CccCCCCCCccC
Confidence 457888888776
No 378
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=71.04 E-value=1.1e+02 Score=30.83 Aligned_cols=132 Identities=16% Similarity=0.092 Sum_probs=76.2
Q ss_pred chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHH-hhh----HHHHHHHHHHHhCCHhHHHH
Q 017402 216 YAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLA-DAG----LERAVEVLSILVKCKEGREE 290 (372)
Q Consensus 216 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll-~~~----~e~a~~~L~~L~~~~~~~~~ 290 (372)
.++|.|..-+++.+. .++..++..+-.++..-+ ..+++.-++|.|-.+. .+. +-+++.++..+. ..-.+..
T Consensus 389 ~IlplL~~S~~~~~~-~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~-q~lD~~~ 464 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDV-QIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI-QRLDKAA 464 (700)
T ss_pred HHHHHHHHHhcCcch-hhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 466666666655555 788888888877765433 3344444566665554 111 445666666666 1222223
Q ss_pred HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHH
Q 017402 291 MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVR 355 (372)
Q Consensus 291 i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~ 355 (372)
+++ -+..+.+-++..++.+.-....+..++....... .+++-+.++|.++-+...+.-.+.
T Consensus 465 v~d---~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~ 525 (700)
T KOG2137|consen 465 VLD---ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGE 525 (700)
T ss_pred hHH---HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHH
Confidence 333 2555555555567777766666666655443333 566667788988888876654333
No 379
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=70.68 E-value=69 Score=27.57 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC-----c------------hHHHHHHHHHHHhhcCCCch
Q 017402 188 PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK-----L------------IREKKEAATALYALTSFPEN 250 (372)
Q Consensus 188 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~-----~------------~~~~~~a~~aL~~L~~~~~~ 250 (372)
......++..+..|...++....+.. .+.++.+.+.|..-+ . ......-...|+.|+.++.+
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~-~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSE-SKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHH-ccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 55566778888888777765555555 578888877775431 0 02233445588899999999
Q ss_pred hHHHHhcCchHHHHHHHhhh--HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402 251 RKRVVSCGAVPILMRLADAG--LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324 (372)
Q Consensus 251 ~~~i~~~g~v~~L~~ll~~~--~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 324 (372)
...+-+.|....+.++.+.. .+...-++.+|=-.-++.. -..|-+.|..+++.+|..|...|..+.
T Consensus 157 l~lLe~~~if~~l~~i~~~~~~~~l~klil~~LDY~~~~~~--------R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSSRDDLLKLILSSLDYSVDGHP--------RIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCchHHHHHHHHhhCCCCCccHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999654 3334445666633222221 122336667788999999998887654
No 380
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=70.27 E-value=88 Score=28.65 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=104.1
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhh-cChHHHHHHhhc-CC-HHHHHHHHhhc--C-CC--------hhHHHHHHHHH
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSK-RDSASRRKLTES-GA-VSAVLNCLKIH--S-DG--------FTLQEKALSLL 157 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~-g~-i~~L~~lL~~~--~-~~--------~~~~~~a~~~L 157 (372)
+...|.+. .......+++.|..++. .+......+.+. +. .+.+.+++... . .. +.+|...+..+
T Consensus 61 lyr~L~~~--~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~ 138 (330)
T PF11707_consen 61 LYRSLSSS--KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFW 138 (330)
T ss_pred HHHHhCcC--cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHH
Confidence 44455544 45666789999999998 665666666654 43 45667776421 0 11 28888888888
Q ss_pred hcCCCC--cccccccc-ccCChHHHHHHHhcCChHHHHHHHHHHHH-hcccc----cchhhhccccchHHHHHHHhhcCC
Q 017402 158 LNLSLD--DDNKVGLV-AEGAVSRVVAALRFGSPDCRAIAATIITS-LAVVE----VNKATIGDYPYAINALVSLLQNGK 229 (372)
Q Consensus 158 ~~l~~~--~~~~~~i~-~~g~i~~lv~~L~~~~~~~~~~a~~~L~~-ls~~~----~~~~~i~~~~g~i~~Lv~ll~~~~ 229 (372)
..+... +..+..+. +.+.+..+.+-|..++.++......+|.. +..+. ..|..+-. ...+..|+.+.....
T Consensus 139 Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 139 LSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHHhcccC
Confidence 776554 34455555 46788999999988889988888888874 33332 24555555 578899999665433
Q ss_pred c---hHHHHHHHHHHHhhcCCCch
Q 017402 230 L---IREKKEAATALYALTSFPEN 250 (372)
Q Consensus 230 ~---~~~~~~a~~aL~~L~~~~~~ 250 (372)
+ ..+.+.+-..|..+|.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 2 36777888888888877653
No 381
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=70.19 E-value=63 Score=32.48 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=85.3
Q ss_pred hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHh-cCChHHHHHHHHHHHHhcccccc
Q 017402 129 ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALR-FGSPDCRAIAATIITSLAVVEVN 207 (372)
Q Consensus 129 ~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~~~ 207 (372)
...++|.|.+.++ +.+..+|+.++..+..++..-+ ..+++.-++|.|-.+.. ..+..++.+++.++..+. +.
T Consensus 387 ~~~IlplL~~S~~--~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~ 459 (700)
T KOG2137|consen 387 KEKILPLLYRSLE--DSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QR 459 (700)
T ss_pred HHHHHHHHHHHhc--CcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HH
Confidence 4456777777777 7788899999999999887644 44566677777777643 467888888888888887 22
Q ss_pred hhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh
Q 017402 208 KATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG 270 (372)
Q Consensus 208 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~ 270 (372)
.+.... ...+.++....+..++ .+.-..+.+..++.........+....++|.++.+...+
T Consensus 460 lD~~~v-~d~~lpi~~~~~~~dp-~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 460 LDKAAV-LDELLPILKCIKTRDP-AIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHh-HHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 222111 1234444444444444 666666666666766554434444556777777776443
No 382
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.78 E-value=3.4 Score=35.44 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=34.6
Q ss_pred CCCCccccCCcccCCCcee----cCC-----chHhhHHHHHHHHhcCC-------CCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPVI----LSS-----GHTFDRASIQRWLDSGH-------RTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~----~~c-----gh~~c~~ci~~~~~~~~-------~~CP~c~~~~~ 54 (372)
.+.+..|-||...=.|--. -|| .|..+..|+.+|+.+.. -.||.|+..+.
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4567789999876443321 233 36688999999997522 26999998765
No 383
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=69.51 E-value=3.8 Score=23.16 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=7.5
Q ss_pred CCCCCCCCCC
Q 017402 43 HRTCPITKLP 52 (372)
Q Consensus 43 ~~~CP~c~~~ 52 (372)
...||.|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 5579999764
No 384
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=68.33 E-value=79 Score=27.32 Aligned_cols=189 Identities=15% Similarity=0.081 Sum_probs=100.9
Q ss_pred CCChhHHHHHHHHHhcCCCCc-cccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHH
Q 017402 144 SDGFTLQEKALSLLLNLSLDD-DNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALV 222 (372)
Q Consensus 144 ~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv 222 (372)
..+++.+...+.+|..++.++ .+. .-++..+..+.+.++.+.+..+.+.+..+-..++ +.. +.+..++
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-----~~L~~~L 80 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-----PFLQPLL 80 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH-----HHHHHHH
Confidence 578899999999999999887 332 2234556666666666665566666666643321 111 3444444
Q ss_pred HHh--------hcCCc-hHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHH-hhh----HHHHHHHHHHHhCCHhHH
Q 017402 223 SLL--------QNGKL-IREKKEAATALYALTSFPENRKRVVSCGAVPILMRLA-DAG----LERAVEVLSILVKCKEGR 288 (372)
Q Consensus 223 ~ll--------~~~~~-~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll-~~~----~e~a~~~L~~L~~~~~~~ 288 (372)
..+ .+++. -+.....+.++..+|...++ .-...++.+...+ +.. ...++.+|..|| .
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc-----~ 151 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC-----E 151 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-----H
Confidence 441 11111 13333344577777775544 1112456677777 333 556788889898 2
Q ss_pred HHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhcccH
Q 017402 289 EEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLEDDNE 352 (372)
Q Consensus 289 ~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~~~~ 352 (372)
..+++-......+...+.. ..+.+.+.-+..+..+.... +..........++..+.++..+.+.
T Consensus 152 ~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 152 AEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 3333322234444444422 23333333333333332221 1222344556678888888877553
No 385
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=68.05 E-value=19 Score=25.99 Aligned_cols=68 Identities=18% Similarity=0.099 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 298 VGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 298 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
+...+..+.+..+.+|-+++..|..+..... ....-..+++..+...+++.++-|.-+|...|..|-+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 4455666677778899999999999887633 2223335688889999999999999999998876643
No 386
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.88 E-value=3.5 Score=41.85 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=28.6
Q ss_pred CCCCccccCCccc-CCCce-ecCCchHhhHHHHHHHHh
Q 017402 5 FPDDFKCPISLEI-MSDPV-ILSSGHTFDRASIQRWLD 40 (372)
Q Consensus 5 ~~~~~~C~ic~~~-~~~Pv-~~~cgh~~c~~ci~~~~~ 40 (372)
++..-.|.+|... +..|. +.+|||.|++.|+.+...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3456689999985 55775 568999999999998764
No 387
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=67.35 E-value=4.5 Score=30.06 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHH
Q 017402 150 QEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCR 191 (372)
Q Consensus 150 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~ 191 (372)
....+..+..|+..++....+++.|+++.|+.+|.+++.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 567788889999999988999999999999999999887664
No 388
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=67.16 E-value=48 Score=36.34 Aligned_cols=133 Identities=15% Similarity=0.172 Sum_probs=78.4
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHH-HHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCC-Ccccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSAS-RRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL-DDDNKVG 169 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 169 (372)
++..|.++ ....|.+|++.|..+...++.. ....++.|+... +. +.+..+++.|+..++.... +++....
T Consensus 821 Il~~l~e~--~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R----~~--DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 821 ILSVLGEN--AIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR----LN--DSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHhcCc--hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh----hc--cchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 44445433 6788999999999999877744 222333333322 23 4667899999999986432 3333222
Q ss_pred ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhc---CCchHHHHHHHHHHHhh
Q 017402 170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN---GKLIREKKEAATALYAL 244 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~---~~~~~~~~~a~~aL~~L 244 (372)
..+.+..-+.+....+|..+...+..++...+.-..+. ...+++++. +.. .+++.+..++.++
T Consensus 893 -----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~------~~cakmlrRv~DEEg-~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 893 -----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV------DMCAKMLRRVNDEEG-NIKKLVRETFLKL 958 (1692)
T ss_pred -----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH------HHHHHHHHHhccchh-HHHHHHHHHHHHH
Confidence 23445555556677888888888888876544433332 233333332 222 3566666666555
No 389
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.85 E-value=1.2e+02 Score=30.83 Aligned_cols=71 Identities=20% Similarity=0.129 Sum_probs=45.5
Q ss_pred CChHHHHHH-HhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhH
Q 017402 174 GAVSRVVAA-LRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRK 252 (372)
Q Consensus 174 g~i~~lv~~-L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 252 (372)
++|..|+.. .++.+.++|..|..+|+-+...+ ....+..|.+|....++.++--|+.+|.--|....++.
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~d---------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD---------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecC---------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 445555555 35567888888888887765433 34455666666655444778788888877776655544
Q ss_pred H
Q 017402 253 R 253 (372)
Q Consensus 253 ~ 253 (372)
.
T Consensus 625 A 625 (929)
T KOG2062|consen 625 A 625 (929)
T ss_pred H
Confidence 3
No 390
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=66.74 E-value=4 Score=33.95 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=35.4
Q ss_pred ccccCCcccCCCcee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..|.+|.++.-.-+. -+||-.|.+.|+..++.+ ...||.|+.-.+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccC
Confidence 469999998766554 368888999999999987 778999965444
No 391
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=66.28 E-value=87 Score=28.68 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhh-cChHHHHHHhh-cCCHHHHHHHHhhcCCChhHHHHHHHHHhc-CCCCc----cccccccccCCh
Q 017402 104 ESKLESLTQLTKLSK-RDSASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEKALSLLLN-LSLDD----DNKVGLVAEGAV 176 (372)
Q Consensus 104 ~~~~~a~~~L~~l~~-~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~-l~~~~----~~~~~i~~~g~i 176 (372)
++|...++-+..+.. .++..+..+.+ .+.+..+++-|. .++.++....+.+|.. +..++ ..|..+.+...+
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~--~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L 206 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLR--KDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTL 206 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhccc--CCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHH
Confidence 778888877765554 45666777665 467788888888 6788899999999975 44443 345577788899
Q ss_pred HHHHHHHhcCCh----HHHHHHHHHHHHhccccc
Q 017402 177 SRVVAALRFGSP----DCRAIAATIITSLAVVEV 206 (372)
Q Consensus 177 ~~lv~~L~~~~~----~~~~~a~~~L~~ls~~~~ 206 (372)
..|+.+....+. .+...+-..|..++.+..
T Consensus 207 ~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 207 SQLASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 999997776666 888889999999886654
No 392
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=66.28 E-value=2.4 Score=22.60 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=4.8
Q ss_pred cccCCcccC
Q 017402 10 KCPISLEIM 18 (372)
Q Consensus 10 ~C~ic~~~~ 18 (372)
.||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 366665544
No 393
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=66.17 E-value=78 Score=29.57 Aligned_cols=144 Identities=18% Similarity=0.150 Sum_probs=71.4
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc--CCHHHHHHHHh-hcCCChhHHHHHHHHHhcCCCCccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES--GAVSAVLNCLK-IHSDGFTLQEKALSLLLNLSLDDDN 166 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~-~~~~~~~~~~~a~~~L~~l~~~~~~ 166 (372)
.|.|..=-++++....|..|..-|+.+++.- .+.+... +.+..++.-.. +...+...++.|+..+..++.....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~---~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t 288 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKF---EKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST 288 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence 3455443344333345666677778888632 2222211 22333322221 2234556788899988888766433
Q ss_pred cc-ccccc----CChHHHHHH----Hh---cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHH
Q 017402 167 KV-GLVAE----GAVSRVVAA----LR---FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREK 234 (372)
Q Consensus 167 ~~-~i~~~----g~i~~lv~~----L~---~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 234 (372)
.. -+.+. ++.+.+... |. +..+-++..|++.+...... -.+..+ .+++|.++..|.+++. -+.
T Consensus 289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~-l~~~~l---~~~~~~l~~~L~~~~~-vv~ 363 (370)
T PF08506_consen 289 TKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ-LPKEQL---LQIFPLLVNHLQSSSY-VVH 363 (370)
T ss_dssp BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG-S-HHHH---HHHHHHHHHHTTSS-H-HHH
T ss_pred ccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh-CCHHHH---HHHHHHHHHHhCCCCc-chh
Confidence 22 11111 111111111 12 23455667777777766432 223333 3689999999999887 677
Q ss_pred HHHHHHH
Q 017402 235 KEAATAL 241 (372)
Q Consensus 235 ~~a~~aL 241 (372)
..|+.++
T Consensus 364 tyAA~~i 370 (370)
T PF08506_consen 364 TYAAIAI 370 (370)
T ss_dssp HHHHHHH
T ss_pred hhhhhhC
Confidence 7777664
No 394
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=65.83 E-value=8.8 Score=28.55 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHH
Q 017402 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQ 150 (372)
Q Consensus 106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~ 150 (372)
.-..++.+..++. .|+....+++.|+++.|+.+|. +.+.++.
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~--HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLS--HENTDIA 104 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHC--CCCccee
Confidence 4467788888887 6789999999999999999998 6666553
No 395
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=65.79 E-value=96 Score=27.38 Aligned_cols=208 Identities=12% Similarity=0.088 Sum_probs=105.7
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHhc--CChHHHHHHHHHHHHhcccccchhhh
Q 017402 135 AVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALRF--GSPDCRAIAATIITSLAVVEVNKATI 211 (372)
Q Consensus 135 ~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~~~~~i 211 (372)
.|-..|. ++++.+|..|+..|..+... +... .+..-+..|+.++.+ .|......++.++..|..........
T Consensus 3 ~Lg~~Lt--sed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~ 77 (262)
T PF14500_consen 3 SLGEYLT--SEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES 77 (262)
T ss_pred chhhhhC--CCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh
Confidence 3455676 78899999999988875443 3221 233335667776644 45555555566666665322211111
Q ss_pred ccccchHHHHHHHhhcCC-chHHHHHHHHHHHhhcCCCchhHHHH--hcCchHHHHHHHhhh-HHH----HHHHHHHHhC
Q 017402 212 GDYPYAINALVSLLQNGK-LIREKKEAATALYALTSFPENRKRVV--SCGAVPILMRLADAG-LER----AVEVLSILVK 283 (372)
Q Consensus 212 ~~~~g~i~~Lv~ll~~~~-~~~~~~~a~~aL~~L~~~~~~~~~i~--~~g~v~~L~~ll~~~-~e~----a~~~L~~L~~ 283 (372)
. ...+..+..-...+. ....|..+...|..|..+.. ..+. ..+.+..+++.++.. ..+ +..++..+..
T Consensus 78 ~--~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~--~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 78 A--VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR--EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred H--HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH--HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1 123333333222221 13677788888888765432 2222 234566777777544 222 3333333333
Q ss_pred CHhHHHHHHhccchHHHHHHHHhc----------CCh-hH-H-HhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc
Q 017402 284 CKEGREEMMRVSGCVGVFVKMLKT----------GSS-RA-V-QCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD 350 (372)
Q Consensus 284 ~~~~~~~i~~~~g~i~~L~~ll~~----------~~~-~~-~-~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~ 350 (372)
.-+. +...+.+-+.+.. +++ .+ + +........++.. +..... +++.|++-+.++
T Consensus 154 ~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-~~fa~~-----~~p~LleKL~s~ 220 (262)
T PF14500_consen 154 EFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-PLFAPF-----AFPLLLEKLDST 220 (262)
T ss_pred hccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-HhhHHH-----HHHHHHHHHcCC
Confidence 2111 1223333333321 111 11 2 2333333334433 444322 688888888888
Q ss_pred cHHHHHHHHHHHHH
Q 017402 351 NEKVRRNANNLIQT 364 (372)
Q Consensus 351 ~~~v~~~a~~~L~~ 364 (372)
...+|..+...|..
T Consensus 221 ~~~~K~D~L~tL~~ 234 (262)
T PF14500_consen 221 SPSVKLDSLQTLKA 234 (262)
T ss_pred CcHHHHHHHHHHHH
Confidence 88888888777753
No 396
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=65.55 E-value=26 Score=22.86 Aligned_cols=47 Identities=30% Similarity=0.355 Sum_probs=38.1
Q ss_pred HHHHhcCCHHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHHHhc
Q 017402 320 LSCLCCCSQEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 320 L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~ 367 (372)
|.-||.. ...|..+++.|+.+.+..+=.. .+++++...-++...|-.
T Consensus 2 LllL~~T-~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLir 49 (58)
T PF04064_consen 2 LLLLCAT-REGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIR 49 (58)
T ss_pred HhHHhcc-HHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 4566766 8999999999998888886665 589999999999987654
No 397
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=64.64 E-value=1.6e+02 Score=30.36 Aligned_cols=121 Identities=11% Similarity=-0.002 Sum_probs=76.6
Q ss_pred chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhh----hHHHHHHHHHHHhCC-HhHHHH
Q 017402 216 YAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA----GLERAVEVLSILVKC-KEGREE 290 (372)
Q Consensus 216 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~----~~e~a~~~L~~L~~~-~~~~~~ 290 (372)
..-..+...+..++. ......+.++.+++.-..-...- ...-.+.-..-.+. -.+....+|..++.. ++....
T Consensus 441 ~lW~~l~~~~~~~~~-~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~ 518 (727)
T PF12726_consen 441 NLWKALLKSLDSDNP-DLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKE 518 (727)
T ss_pred HHHHHHHHhhcCCCh-HHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 345555666665544 67777888888877643211111 11122222222222 255677888888884 556677
Q ss_pred HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC--HHHHHHHHhcC
Q 017402 291 MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS--QEICGDSRKEG 338 (372)
Q Consensus 291 i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~g 338 (372)
+....++...++.++.+++..+.+.|..+|..+...+ .+.-+++.+..
T Consensus 519 l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~ 568 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSN 568 (727)
T ss_pred HHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 8887889999999999999999999999999976431 14445555543
No 398
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=64.38 E-value=21 Score=35.68 Aligned_cols=107 Identities=21% Similarity=0.161 Sum_probs=71.0
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc------cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402 135 AVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA------EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK 208 (372)
Q Consensus 135 ~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~------~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~ 208 (372)
.++.+|. +.+-.++...+.+..|+..+-.-...+++ ...+..+++-|.+.++-+|..|...+..+..- +-
T Consensus 303 ~~~~LLd--ses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl--~s 378 (1128)
T COG5098 303 HFDELLD--SESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDL--NS 378 (1128)
T ss_pred HHHHHhc--ccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhC--cc
Confidence 3455666 66777788888888887655211112332 24555666666677899999888888877532 22
Q ss_pred hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246 (372)
Q Consensus 209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 246 (372)
........++...+..+++.+. -++++|...+..|-.
T Consensus 379 k~~~~r~ev~~lv~r~lqDrss-~VRrnaikl~SkLL~ 415 (1128)
T COG5098 379 KTVGRRHEVIRLVGRRLQDRSS-VVRRNAIKLCSKLLM 415 (1128)
T ss_pred cccchHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHh
Confidence 2233335678888888888877 899999998887654
No 399
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=64.23 E-value=7 Score=37.28 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=45.2
Q ss_pred HHhcCChhHHHhHHHHHHHHhcCCHHHHHH-HHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 304 MLKTGSSRAVQCSLFTLSCLCCCSQEICGD-SRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 304 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
+....++.+++.|..++.+++.. -++|.. +-....-..+++++....+++-+.+..+++.+-+
T Consensus 336 ~~a~~n~~l~~qa~~~v~~~~~~-~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 336 LCAHKNPELQRQALLAVGNLAFC-LENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HhcccChHHHHHHHHHHHHheec-ccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 33457889999999999999876 334333 3334566777888888888888888888876644
No 400
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=63.56 E-value=3.4 Score=29.52 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=27.5
Q ss_pred ccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
-.|-+|..-.+.| |+.||..|-.+ ...|..|+..+.
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC-----CCccChhhhcc-----cCcccccCCeec
Confidence 3688888766654 88899999653 568999998774
No 401
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=63.34 E-value=32 Score=27.05 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=54.6
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhh----cCCChhHHHHHHHHHhcCC
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKI----HSDGFTLQEKALSLLLNLS 161 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~----~~~~~~~~~~a~~~L~~l~ 161 (372)
..+...|.+. ++.++..|+..|..+... ...+...+...+++..|++++.. ...+..++...+..|..-+
T Consensus 41 rai~krl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 41 RLLAHKIQSP--QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3466677765 789999999999888864 35688889999999999999962 1246789999999887754
No 402
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.33 E-value=67 Score=28.92 Aligned_cols=127 Identities=16% Similarity=0.078 Sum_probs=66.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcC
Q 017402 179 VVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCG 258 (372)
Q Consensus 179 lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g 258 (372)
.+..|.+.+=+.+-.+.-.+..|+.... ....-.....|-.+++-+++..+ .+.+.|+.++..+.+.-.+.-.-
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS-~VsraA~~t~~difs~ln~~i~~---- 166 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRS-AVSRAACMTLADIFSSLNNSIDQ---- 166 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3444444444444445555555554432 11111113577888888888887 88889999998887643222111
Q ss_pred chHHHHHHH--hh--h----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHH
Q 017402 259 AVPILMRLA--DA--G----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLF 318 (372)
Q Consensus 259 ~v~~L~~ll--~~--~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~ 318 (372)
..+.++..| .. + ++.+-.+|..+..+-... ..++.|...+++.++.++..++.
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~ 227 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAAL 227 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhc
Confidence 233333333 11 1 566667776666643222 23344444455555665555543
No 403
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=62.74 E-value=1.3e+02 Score=27.67 Aligned_cols=203 Identities=15% Similarity=0.078 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCCCCccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcC
Q 017402 150 QEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG 228 (372)
Q Consensus 150 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~ 228 (372)
+...+.+|..+.. .+ ....++..++.++.. .++.....++.++..-...- ...+. ..++..+.+=+.+.
T Consensus 4 r~~~~~~L~~l~~-~~-----~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~--~~~~~--~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS-----LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL--SSELP--KKVVDAFKKGLKDK 73 (339)
T ss_pred HHHHHHHHHhCCC-cc-----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh--CcCCC--HHHHHHHHHHhcCC
Confidence 4455566666655 22 345566777777765 46666666666666543222 12222 36788888888887
Q ss_pred CchHHHHHHHHHHHhhcCCCchh--HHHHhcCchHHHHHHHhhh---------HHH--HHHHHHHHhC--CHhHHH-HHH
Q 017402 229 KLIREKKEAATALYALTSFPENR--KRVVSCGAVPILMRLADAG---------LER--AVEVLSILVK--CKEGRE-EMM 292 (372)
Q Consensus 229 ~~~~~~~~a~~aL~~L~~~~~~~--~~i~~~g~v~~L~~ll~~~---------~e~--a~~~L~~L~~--~~~~~~-~i~ 292 (372)
.. .+|+..+..+.+......+. ..+++ ..++.|++.++.. ... +..++..+.. .+.... .+.
T Consensus 74 k~-~vR~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 151 (339)
T PF12074_consen 74 KP-PVRRAWLLCLGEALWESPNSDSLKFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNIS 151 (339)
T ss_pred CC-cHHHHHHHHHHHHHhhccCchHHHHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhh
Confidence 77 68988888888877622222 22222 3778888888432 011 2222222111 000000 000
Q ss_pred h---ccchHHHH---HHHHhc-CChhHHHhHHHHHHHHhcCCHH-HHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHHH
Q 017402 293 R---VSGCVGVF---VKMLKT-GSSRAVQCSLFTLSCLCCCSQE-ICGDSRKEGVLDICMGLLEDD--NEKVRRNANNLI 362 (372)
Q Consensus 293 ~---~~g~i~~L---~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~L 362 (372)
. ..+-=+.+ -++... .+++...-.+.+|..+..+..+ ..... .......++.++-+. ..++|+.|..+|
T Consensus 152 ~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l 230 (339)
T PF12074_consen 152 FWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSAL 230 (339)
T ss_pred hhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 0 00000000 022222 3444455566666665544332 11122 334677788888777 889999999999
Q ss_pred HHH
Q 017402 363 QTL 365 (372)
Q Consensus 363 ~~l 365 (372)
+.+
T Consensus 231 ~~l 233 (339)
T PF12074_consen 231 KKL 233 (339)
T ss_pred HHH
Confidence 754
No 404
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=62.64 E-value=55 Score=25.77 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=53.4
Q ss_pred hHHHHHHHHhc-CChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHH-HHHHhhc---ccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDI-CMGLLED---DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~-l~~ll~~---~~~~v~~~a~~~L~~l~ 366 (372)
++..|.+-|.. .++.+...|+.+|-.+..+. .....++.+.+.+.. |+.++.. .+..|+.+...+++...
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 56666676664 57888889999998888765 477778888888886 8888863 35689999999987554
No 405
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.37 E-value=5.9 Score=37.97 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=29.2
Q ss_pred CCccccCCcccCCC-ceecCCchHhhHHHHHHHHhc
Q 017402 7 DDFKCPISLEIMSD-PVILSSGHTFDRASIQRWLDS 41 (372)
Q Consensus 7 ~~~~C~ic~~~~~~-Pv~~~cgh~~c~~ci~~~~~~ 41 (372)
....|.||.+-+.. .+.+.|||.||..|...++..
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 45789999998875 556789999999999998864
No 406
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=62.25 E-value=7 Score=32.21 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCC
Q 017402 42 GHRTCPITKLPLP 54 (372)
Q Consensus 42 ~~~~CP~c~~~~~ 54 (372)
..+.||.|+..+.
T Consensus 135 ~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 135 YGFRCPQCGEMLE 147 (178)
T ss_pred cCCcCCCCCCCCe
Confidence 4789999999888
No 407
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.89 E-value=38 Score=31.05 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=55.7
Q ss_pred HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHh--hcccHHHHHHHHHHHHHHhcC
Q 017402 291 MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLL--EDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 291 i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll--~~~~~~v~~~a~~~L~~l~~~ 368 (372)
+..++|++..=.-....++ ....|-...++++|+..+++...+.+.||++.++.-. .+.+|-+++-..-+++.|.++
T Consensus 352 i~s~egcvr~el~i~nv~n-~~esHvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~n 430 (478)
T KOG2676|consen 352 ISSMEGCVRQELYIANVGN-KRESHVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQN 430 (478)
T ss_pred eccccchHHhhhhhhhhcc-cchHHHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhc
Confidence 4434565544333222222 1123677899999999899999999999999998855 456899999999999988765
Q ss_pred C
Q 017402 369 P 369 (372)
Q Consensus 369 ~ 369 (372)
.
T Consensus 431 N 431 (478)
T KOG2676|consen 431 N 431 (478)
T ss_pred c
Confidence 4
No 408
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.19 E-value=29 Score=28.12 Aligned_cols=104 Identities=21% Similarity=0.177 Sum_probs=62.4
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcC--CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC----cc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESG--AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD----DD 165 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~----~~ 165 (372)
+.++|.++ +.+.|-.++..+...+..++ .+.+.+.| .+..++.+|+. .+...+.+.++.+|..+... ++
T Consensus 30 i~~LL~s~--~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 30 INSLLQSK--SAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHhCCC--ChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 55666654 67888888888888887542 56665543 47778888985 35566788888887775433 33
Q ss_pred ccccccc---cCChHHHHHHHhcCChHHHHHHHHHHHHhc
Q 017402 166 NKVGLVA---EGAVSRVVAALRFGSPDCRAIAATIITSLA 202 (372)
Q Consensus 166 ~~~~i~~---~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls 202 (372)
..+.+.. .+.++.++.+++. ......++.+|..+-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 3333332 2345555555543 344445555555544
No 409
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=60.85 E-value=7.7 Score=39.26 Aligned_cols=45 Identities=29% Similarity=0.560 Sum_probs=34.4
Q ss_pred CCccccCCcccCC--Ccee--cCCchHhhHHHHHHHHhc------CCCCCCCCCC
Q 017402 7 DDFKCPISLEIMS--DPVI--LSSGHTFDRASIQRWLDS------GHRTCPITKL 51 (372)
Q Consensus 7 ~~~~C~ic~~~~~--~Pv~--~~cgh~~c~~ci~~~~~~------~~~~CP~c~~ 51 (372)
..+.|-||.+.+. +|+- ..|=|.|...||.+|-.. ....||.|+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 4578999998764 6653 247899999999999863 2357999983
No 410
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=60.84 E-value=42 Score=31.12 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=59.0
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhh-cccHHHHHHHHHHHHHHhc
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLE-DDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~ 367 (372)
++..|.+-|...++.+.-.|+..|..+..+.. ..+.++-.......|..++. ..+++|+++-+.+++..++
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 67777788888899999999999988876644 77888888889999999999 6789999999888876654
No 411
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=58.72 E-value=6.9 Score=24.88 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=8.3
Q ss_pred ccccCCcccCCC
Q 017402 9 FKCPISLEIMSD 20 (372)
Q Consensus 9 ~~C~ic~~~~~~ 20 (372)
+.||+|+.--+.
T Consensus 5 i~CP~CgnKTR~ 16 (55)
T PF14205_consen 5 ILCPICGNKTRL 16 (55)
T ss_pred EECCCCCCccce
Confidence 579999865443
No 412
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.93 E-value=71 Score=31.38 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc
Q 017402 133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG 212 (372)
Q Consensus 133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 212 (372)
++..+++|.+ +.+..++...+-+|.-.+.+...+. ++..|-.++.+.+.=+|..|+-++..+.... +-+..-
T Consensus 587 lv~tvelLs~-shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~-n~~Lnp 658 (926)
T COG5116 587 LVGTVELLSE-SHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQC-NPELNP 658 (926)
T ss_pred hhHHHHHhhh-ccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc-CcccCh
Confidence 4444555543 2445555555555554443322221 2334444445556667777777777665432 333333
Q ss_pred cccchHHHHHHHhhcCCc
Q 017402 213 DYPYAINALVSLLQNGKL 230 (372)
Q Consensus 213 ~~~g~i~~Lv~ll~~~~~ 230 (372)
...++++.+..++.+..+
T Consensus 659 ~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 659 NVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred hHHHHHHHHHHHHhhhhH
Confidence 335788888888887665
No 413
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.70 E-value=6.7 Score=27.69 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=11.6
Q ss_pred HhhHHHHHHHHhc
Q 017402 29 TFDRASIQRWLDS 41 (372)
Q Consensus 29 ~~c~~ci~~~~~~ 41 (372)
.|||.|+..|...
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999975
No 414
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=57.58 E-value=6.9 Score=29.84 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCC
Q 017402 43 HRTCPITKLPLP 54 (372)
Q Consensus 43 ~~~CP~c~~~~~ 54 (372)
...||.|+..+.
T Consensus 26 p~vcP~cg~~~~ 37 (129)
T TIGR02300 26 PAVSPYTGEQFP 37 (129)
T ss_pred CccCCCcCCccC
Confidence 456787777655
No 415
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=57.45 E-value=1.7e+02 Score=29.85 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=85.1
Q ss_pred CCccccccccccCChHHHHHHHhcCC-hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcC---CchHHHHHH
Q 017402 162 LDDDNKVGLVAEGAVSRVVAALRFGS-PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG---KLIREKKEA 237 (372)
Q Consensus 162 ~~~~~~~~i~~~g~i~~lv~~L~~~~-~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~a 237 (372)
..++.|..+...|++..+.+.|.+.+ .+....+..+|..|-..+..-+.+-. --++..++||+-. .+++.+...
T Consensus 363 ~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~d~lnmdldf--~Slelmi~LL~~ek~~gS~e~~~~~ 440 (865)
T KOG2152|consen 363 VMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSRDKLNMDLDF--LSLELMIHLLRLEKFEGSHESRDKF 440 (865)
T ss_pred cChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhhhhhcccccc--hhHHHHHHHHhhhcccCChhhHHHH
Confidence 34778888889999999999997643 33444455566665544433333222 2344555555432 221222111
Q ss_pred HHHHHhhcCCCchhHHHHhcCchHHHHHHHhh-----------h----HHHHHHH-HHHHhC---CHhHHHHHHhccchH
Q 017402 238 ATALYALTSFPENRKRVVSCGAVPILMRLADA-----------G----LERAVEV-LSILVK---CKEGREEMMRVSGCV 298 (372)
Q Consensus 238 ~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~-----------~----~e~a~~~-L~~L~~---~~~~~~~i~~~~g~i 298 (372)
. |+. ++ .|..|...... . ...+..+ +..|++ .+-.+..+.. .|++
T Consensus 441 ~----n~~-----~e------vir~L~e~~~~gG~~~h~n~~~~t~~~~~lamet~vl~lsSk~~~d~~k~elr~-Lg~l 504 (865)
T KOG2152|consen 441 T----NLV-----KE------VIRSLCELQLRGGQKVHLNMRNETLGPSSLAMETLVLILSSKRAGDWFKSELRN-LGGL 504 (865)
T ss_pred H----HHH-----HH------HHHHHHHHHHhcCCcccccccCCCCCchhhhhheeEEEEeccccchhHHHHHHh-cchH
Confidence 1 110 00 12222222211 0 2233333 222222 3445666666 7788
Q ss_pred HHHHHHHhcC-C-------h----hHHHhHHHHHHHHhcCCHHHHHHHHhcC
Q 017402 299 GVFVKMLKTG-S-------S----RAVQCSLFTLSCLCCCSQEICGDSRKEG 338 (372)
Q Consensus 299 ~~L~~ll~~~-~-------~----~~~~~a~~~L~~l~~~~~~~~~~~~~~g 338 (372)
..++..+... + + ...+.+..+|.+.+.+++.++..++..|
T Consensus 505 q~iv~~i~~~~~~~~~~~~e~~~~~tL~rC~rvles~s~hn~snq~yLis~g 556 (865)
T KOG2152|consen 505 QHIVSKIETNVSPTSDNGDESSVILTLERCLRVLESVSVHNGSNQGYLISLG 556 (865)
T ss_pred HHHHHHHHhccCcCCCCcchhhHHHhHHHHHHHhhcccccCcchhHHHHhcc
Confidence 8888777541 1 1 1236788888888888889988888876
No 416
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=57.27 E-value=1.1e+02 Score=30.89 Aligned_cols=181 Identities=9% Similarity=0.021 Sum_probs=104.1
Q ss_pred hhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccc
Q 017402 128 TESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVN 207 (372)
Q Consensus 128 ~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~ 207 (372)
.+.+++|.|+++++ ..+..+|..-+.=+-+...+ ....+++.-++|.+..-+.+.++.+|+.....+..|+..=..
T Consensus 327 yq~~i~p~l~kLF~--~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFK--SPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhc--CcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 45678999999999 78888887766666554332 233456778899999999999999999999988888743333
Q ss_pred hhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCc-hHHHHHHHhhh----HHHHHHHHHHHh
Q 017402 208 KATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGA-VPILMRLADAG----LERAVEVLSILV 282 (372)
Q Consensus 208 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~-v~~L~~ll~~~----~e~a~~~L~~L~ 282 (372)
+ .+ . ...+..+..+-. +..+.++.+..-+|..++..... .++.++ +....+.+.++ +...+.+++...
T Consensus 403 ~-~L-n-~Ellr~~ar~q~-d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 403 R-NL-N-GELLRYLARLQP-DEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred h-hh-c-HHHHHHHHhhCc-cccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 3 22 2 235555555444 33347888888888887765321 112222 22344444333 344444444443
Q ss_pred CCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHH
Q 017402 283 KCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSC 322 (372)
Q Consensus 283 ~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~ 322 (372)
..-+..+.. ...++.++-+.-+.+..++..|..++..
T Consensus 476 ~~~~~~~va---~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 476 EYFDQSEVA---NKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred cccchhhhh---hhccccccccccCcccchhhHHHHHHHH
Confidence 322222111 1234444444444445555555554444
No 417
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=57.04 E-value=20 Score=28.42 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=17.9
Q ss_pred hHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 217 AINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 217 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
-|.+|+++|.+.++ .+...|+.+|.+--
T Consensus 95 NV~~LI~~L~~~d~-~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 95 NVQPLIDLLKSDDE-ELAEEAAEALKNTL 122 (154)
T ss_dssp THHHHHHGG--G-T-TTHHHHHHHHHT--
T ss_pred cHHHHHHHHcCCcH-HHHHHHHHHHHhhH
Confidence 47788888876666 77888888887743
No 418
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.71 E-value=7 Score=35.74 Aligned_cols=33 Identities=30% Similarity=0.597 Sum_probs=30.4
Q ss_pred CccccCCcccCCCceecCCchHhhHHHHHHHHh
Q 017402 8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLD 40 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~ 40 (372)
...|.+.+..|.+||-..-|-.|....|..|+.
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lk 72 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLK 72 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHH
Confidence 457999999999999999999999999999996
No 419
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=56.21 E-value=5 Score=34.95 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=30.7
Q ss_pred CCCccccCCcccCC-Cc--------eecCCchHhhHHHHH-HHHhc---------CCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMS-DP--------VILSSGHTFDRASIQ-RWLDS---------GHRTCPITKLPLPD 55 (372)
Q Consensus 6 ~~~~~C~ic~~~~~-~P--------v~~~cgh~~c~~ci~-~~~~~---------~~~~CP~c~~~~~~ 55 (372)
+..+.|+.|...+. -| -+++|...+|..-+. .|+-+ .++.||.|++.|.+
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 45688999998654 22 123444445544443 35543 34689999998884
No 420
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=55.05 E-value=1e+02 Score=29.89 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=62.5
Q ss_pred CchHHHHHHHhhh--HHHHHHHHHHHhCCHhHHHH---HHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCH---
Q 017402 258 GAVPILMRLADAG--LERAVEVLSILVKCKEGREE---MMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQ--- 328 (372)
Q Consensus 258 g~v~~L~~ll~~~--~e~a~~~L~~L~~~~~~~~~---i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~--- 328 (372)
+.|+.+++.++.+ .+-.+.++. +...+.+.. .....+.++.|+.+|.. .+...+.+|+..|..|...+.
T Consensus 21 ~~v~~llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~ 98 (475)
T PF04499_consen 21 NFVDNLLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAP 98 (475)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 5566666666544 344444444 222233333 33347899999999964 566778888888777643221
Q ss_pred ----------HHHHHHHhcChhHHHHHHhh--cccHHHHHHHHHHHHHHhcCC
Q 017402 329 ----------EICGDSRKEGVLDICMGLLE--DDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 329 ----------~~~~~~~~~g~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~ 369 (372)
.....+.+.-.+..|+..+- .+...+-....-++..++++.
T Consensus 99 ~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknn 151 (475)
T PF04499_consen 99 QNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNN 151 (475)
T ss_pred cccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc
Confidence 33344556667777777554 333333344444456666553
No 421
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=54.69 E-value=54 Score=27.18 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=48.6
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
.++.++++..+.+..++..|+.++..+...+=-+= .-++|.++.+..+.++.++..|..+++.+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 45666676677788888888888877665421111 117899999999999999999999998764
No 422
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=54.64 E-value=1.1 Score=40.26 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=19.7
Q ss_pred CccccCCcccCCCceecCC---c--hHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVILSS---G--HTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~c---g--h~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.-.||+|+..-.--++..- | +-+|..|-.+|--. ...||.|+..-.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~~~ 222 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNTDH 222 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---SS
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCCCC
Confidence 3589999985333333322 4 34688888888653 668999987544
No 423
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=54.52 E-value=1.7e+02 Score=26.51 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=84.6
Q ss_pred HHHHhhcCCHHHHHHHHhhc---------------------CCChhHHHHHHHHHhcCCCCccccc--------------
Q 017402 124 RRKLTESGAVSAVLNCLKIH---------------------SDGFTLQEKALSLLLNLSLDDDNKV-------------- 168 (372)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~~~---------------------~~~~~~~~~a~~~L~~l~~~~~~~~-------------- 168 (372)
...+.+.|.||.|-+++..- +.+..++.+-++.+++++.++.++.
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 35677889999988887531 0112478888999999887432211
Q ss_pred --------cccccCChHHHHHHHhcC--ChHHHHHHHHHHHHhcccccc---hhhhccccchHHHHHHHhhcCCc--hHH
Q 017402 169 --------GLVAEGAVSRVVAALRFG--SPDCRAIAATIITSLAVVEVN---KATIGDYPYAINALVSLLQNGKL--IRE 233 (372)
Q Consensus 169 --------~i~~~g~i~~lv~~L~~~--~~~~~~~a~~~L~~ls~~~~~---~~~i~~~~g~i~~Lv~ll~~~~~--~~~ 233 (372)
.-.+.|.+..++..+... +...+---+.++..+...... +..+.. .|.++.|+..+-++.. ..+
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~-~GLLe~lv~eil~~~~~~~~v 160 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAE-RGLLEHLVSEILSDGCMSQEV 160 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHh-cchHHHHHHHHhcCccchHHH
Confidence 112357888888888764 555566666666666655433 334455 7999999998876643 368
Q ss_pred HHHHHHHHHhhcCCCc
Q 017402 234 KKEAATALYALTSFPE 249 (372)
Q Consensus 234 ~~~a~~aL~~L~~~~~ 249 (372)
...+.-.|+.|-..+.
T Consensus 161 ~Q~~FDLLGELiK~n~ 176 (303)
T PF12463_consen 161 LQSNFDLLGELIKFNR 176 (303)
T ss_pred HHHHHHHHHHHHCCCH
Confidence 8888889999888653
No 424
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=54.49 E-value=11 Score=33.43 Aligned_cols=47 Identities=19% Similarity=0.502 Sum_probs=28.3
Q ss_pred CCccccCCcccCC--------Cc-----------eecCCchHhhHHHHHHHHhc-----C----CCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMS--------DP-----------VILSSGHTFDRASIQRWLDS-----G----HRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~--------~P-----------v~~~cgh~~c~~ci~~~~~~-----~----~~~CP~c~~~~~ 54 (372)
.+-.||+|+.+-. +| ..-+|||.. ..--..+|.+ + ...||.|.+.+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~-sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVC-SEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCccccc-chhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 4678999987421 11 123799954 4444456653 1 236999987765
No 425
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.33 E-value=3.4e+02 Score=30.06 Aligned_cols=248 Identities=17% Similarity=0.094 Sum_probs=131.7
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc-----CCChhHHHHHHHHHhcCCCC--ccccccccccC
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH-----SDGFTLQEKALSLLLNLSLD--DDNKVGLVAEG 174 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-----~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g 174 (372)
..+++...+..|.++-...- +.+. .| ++.+.++|++- .....+...+...|.-++.+ ...-.. .=.+
T Consensus 855 ~~evr~~sl~~l~silet~g---e~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~s-ci~~ 928 (1610)
T KOG1848|consen 855 GVEVRISSLEALVSILETVG---EHLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTS-CILD 928 (1610)
T ss_pred cceeeHHHHHHHHHHHhccc---hhhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChH-HHHH
Confidence 45778888888877775322 1221 23 77888877641 11345666666777666554 111000 0145
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhh-hccccchHHHHHHHhhcCCc-hHHHHHHHHH--HHhhcCCCc
Q 017402 175 AVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKAT-IGDYPYAINALVSLLQNGKL-IREKKEAATA--LYALTSFPE 249 (372)
Q Consensus 175 ~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~-i~~~~g~i~~Lv~ll~~~~~-~~~~~~a~~a--L~~L~~~~~ 249 (372)
.|+.++..-+. .|.++-..|.+.++.++..-.+++. .++ .+.-...++-+.+... ..+.-+++|. +.+|+..-+
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~se-d~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSE-DSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccch-hhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 56666666544 5788888999999998755444333 233 3444445555544221 2445555552 334554333
Q ss_pred hhHHHHhcCchHHHHHHHhhh----HHH-----HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHH
Q 017402 250 NRKRVVSCGAVPILMRLADAG----LER-----AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTL 320 (372)
Q Consensus 250 ~~~~i~~~g~v~~L~~ll~~~----~e~-----a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L 320 (372)
.-..-++.|+++.+.+.+++. ... +..++.-|-.....+. .++-.+ +.+ ...-.+-.+.+|
T Consensus 1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~--~~ewng-----kei---qkqwtet~~lti 1077 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN--VSEWNG-----KEI---QKQWTETSCLTI 1077 (1610)
T ss_pred cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc--hhhhcc-----hhH---hhhhhhhhhhhH
Confidence 334456889999999999653 111 2222222222111111 000000 000 011234556677
Q ss_pred HHHhcCCHHHHHHHHhcC----hhHHHH----HHhhcccHHHHHHHHHHHHHHh
Q 017402 321 SCLCCCSQEICGDSRKEG----VLDICM----GLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 321 ~~l~~~~~~~~~~~~~~g----~~~~l~----~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
..|++-.+++.+.+.... +-+.++ .+..++++++...|.+.++.+.
T Consensus 1078 sgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1078 SGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 777776677777666543 233333 3444678888888888887553
No 426
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=53.24 E-value=60 Score=29.74 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcccccchhhhcc-ccchHHHHHHHhhcCCc--hHHHHHHHHHHHhhcCCCchhHHHH
Q 017402 189 DCRAIAATIITSLAVVEVNKATIGD-YPYAINALVSLLQNGKL--IREKKEAATALYALTSFPENRKRVV 255 (372)
Q Consensus 189 ~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~--~~~~~~a~~aL~~L~~~~~~~~~i~ 255 (372)
.+|..|...+..+.........+.. ..+.+..|+++++.... ..++..|+.+|..++....-...++
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3445566666565544444444433 24699999999987543 5789999999999998654333333
No 427
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=52.80 E-value=1.6e+02 Score=25.78 Aligned_cols=42 Identities=7% Similarity=0.056 Sum_probs=28.3
Q ss_pred cchHHHHHHHHhcC--ChhHHHhHHHHHHHHhcCCHHHHHHHHh
Q 017402 295 SGCVGVFVKMLKTG--SSRAVQCSLFTLSCLCCCSQEICGDSRK 336 (372)
Q Consensus 295 ~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 336 (372)
.|-++.|.+++.+. ++-+|..|..+|..+...++.-|..+++
T Consensus 110 ~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 110 DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 35666777777553 4566778888888888776666666554
No 428
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=51.79 E-value=1.3e+02 Score=27.79 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=59.8
Q ss_pred CHHHHHHHHhhc----CC-ChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc----------CChHHHHHHHH
Q 017402 132 AVSAVLNCLKIH----SD-GFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF----------GSPDCRAIAAT 196 (372)
Q Consensus 132 ~i~~L~~lL~~~----~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~----------~~~~~~~~a~~ 196 (372)
.+|.++.++... .. +.......++++..|..++.......=+-.++.++.++-. ++-.+|..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 467777777531 12 4566777788888887776655433335578888877721 23478899999
Q ss_pred HHHHhcccccchhhhccccchHHHHHHHhhcCC
Q 017402 197 IITSLAVVEVNKATIGDYPYAINALVSLLQNGK 229 (372)
Q Consensus 197 ~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~ 229 (372)
.|..++........-.. ..++..|.+.+.+..
T Consensus 291 ll~~i~~~f~~~y~~l~-~ri~~tl~k~l~d~~ 322 (343)
T cd08050 291 LLAQICRKFSTSYNTLQ-PRITRTLLKALLDPK 322 (343)
T ss_pred HHHHHHHHcCCCCCcHH-HHHHHHHHHHHcCCC
Confidence 99999854333222122 345556666666544
No 429
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.27 E-value=1.7e+02 Score=26.47 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=30.5
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
.+-.+++-+++....+-..|+.++..|...-.+.... .-.+.+..|+.--..++.-+++.|.++|..+..+.
T Consensus 130 vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v 201 (334)
T KOG2933|consen 130 VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV 201 (334)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc
Confidence 3444444444444455555555555554331111111 11122222222222234455666666665555544
No 430
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.15 E-value=7.5 Score=36.40 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=26.1
Q ss_pred ccccCCcccCC-----CceecCCchHhhHHHHHHHHhcC
Q 017402 9 FKCPISLEIMS-----DPVILSSGHTFDRASIQRWLDSG 42 (372)
Q Consensus 9 ~~C~ic~~~~~-----~Pv~~~cgh~~c~~ci~~~~~~~ 42 (372)
..||.|.-... ..++-.|||-||..|...|...+
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~ 345 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHN 345 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCC
Confidence 35999986542 45666799999999999988753
No 431
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=50.88 E-value=1.9e+02 Score=26.18 Aligned_cols=219 Identities=10% Similarity=0.116 Sum_probs=142.7
Q ss_pred HHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc-cccc----ccc-ccCChHHHHHHHhcCChHHHHHHHH
Q 017402 123 SRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD-DNKV----GLV-AEGAVSRVVAALRFGSPDCRAIAAT 196 (372)
Q Consensus 123 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~-~~~~----~i~-~~g~i~~lv~~L~~~~~~~~~~a~~ 196 (372)
....+.++|....++..|. ..+-+.+..++.+..++-... .++. .+. +...+..++.--.. .+++-..+-.
T Consensus 71 Ltqef~~~~~l~~lI~~l~--~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~ 147 (342)
T KOG1566|consen 71 LTQEFYNADVLSLLIQHLP--KLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGN 147 (342)
T ss_pred HHHHHHhCCchHHHHHhhh--cccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHH
Confidence 4556778899999999998 677788888888887765432 2222 111 22344444443111 4666666667
Q ss_pred HHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-CCchhHHHHhcCc----hHHHHHHHhhh-
Q 017402 197 IITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPENRKRVVSCGA----VPILMRLADAG- 270 (372)
Q Consensus 197 ~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~----v~~L~~ll~~~- 270 (372)
.+.....++.....|.. ..-.......+..+.- ++...|......+-. +......+...+. .+.--.++.++
T Consensus 148 mlrEcirhe~LakiiL~-s~~~~~FF~~vq~p~F-diasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N 225 (342)
T KOG1566|consen 148 MLRECIRHEFLAKIILE-STNFEKFFLYVQLPNF-DIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN 225 (342)
T ss_pred HHHHHHhhHHHHHHHHc-chhHHHHHHHHhccch-HHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc
Confidence 77777777766666666 5678888888888777 778888888887654 4444455544432 22244455555
Q ss_pred ---HHHHHHHHHHHhCCHhHHHH---HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC---HHHHHHHHhcChhH
Q 017402 271 ---LERAVEVLSILVKCKEGREE---MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS---QEICGDSRKEGVLD 341 (372)
Q Consensus 271 ---~e~a~~~L~~L~~~~~~~~~---i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~g~~~ 341 (372)
+..++.+|..+-.+..+... .+.....+..+..+|++.+..++-.|..+.+-...+- ...+..+.+.. +
T Consensus 226 yvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~ 303 (342)
T KOG1566|consen 226 YVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--P 303 (342)
T ss_pred eehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--H
Confidence 66788888888775554443 3334567889999999999999999999998877652 25555555553 4
Q ss_pred HHHHHhh
Q 017402 342 ICMGLLE 348 (372)
Q Consensus 342 ~l~~ll~ 348 (372)
.|+.++.
T Consensus 304 KLl~~l~ 310 (342)
T KOG1566|consen 304 KLLELLH 310 (342)
T ss_pred HHHHHHH
Confidence 4555554
No 432
>PF12773 DZR: Double zinc ribbon
Probab=50.75 E-value=13 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=14.5
Q ss_pred hHhhHHHHHHHH--hcCCCCCCCCCCCCC
Q 017402 28 HTFDRASIQRWL--DSGHRTCPITKLPLP 54 (372)
Q Consensus 28 h~~c~~ci~~~~--~~~~~~CP~c~~~~~ 54 (372)
..||..|-.... ......||.|+....
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 345555544333 222456888887655
No 433
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=50.61 E-value=4.7 Score=20.23 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=8.2
Q ss_pred ccccCCcccCCCc
Q 017402 9 FKCPISLEIMSDP 21 (372)
Q Consensus 9 ~~C~ic~~~~~~P 21 (372)
|.|++|...|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 3577777666654
No 434
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.50 E-value=3.6e+02 Score=29.19 Aligned_cols=78 Identities=21% Similarity=0.384 Sum_probs=59.7
Q ss_pred chhHHHHhcCchHHHHHHH--hhh--HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHh---cCChhHHHhHHHHHH
Q 017402 249 ENRKRVVSCGAVPILMRLA--DAG--LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLK---TGSSRAVQCSLFTLS 321 (372)
Q Consensus 249 ~~~~~i~~~g~v~~L~~ll--~~~--~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~ 321 (372)
..++++..+|++..+++.+ ..+ +-.-+..+..+++............|+++.|++++. +++.....+|..++.
T Consensus 899 pdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIve 978 (2799)
T KOG1788|consen 899 PDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVE 978 (2799)
T ss_pred chHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHH
Confidence 3667889999999999877 332 445677788888866666666666899999999884 467778889998888
Q ss_pred HHhcC
Q 017402 322 CLCCC 326 (372)
Q Consensus 322 ~l~~~ 326 (372)
.+|..
T Consensus 979 mLgay 983 (2799)
T KOG1788|consen 979 MLGAY 983 (2799)
T ss_pred HHhhc
Confidence 88765
No 435
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=49.65 E-value=79 Score=23.86 Aligned_cols=40 Identities=23% Similarity=0.076 Sum_probs=33.9
Q ss_pred hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhc
Q 017402 217 AINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSC 257 (372)
Q Consensus 217 ~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~ 257 (372)
+|+.|+.-|.+.+. ++...|+.+|...|..++....++..
T Consensus 9 ~i~lLv~QL~D~~~-~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSP-EVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 68999999998888 99999999999999888766666653
No 436
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=49.52 E-value=1.7e+02 Score=25.17 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhh-----h---------H--------HHHHHHHHHHhCCHhHHH
Q 017402 232 REKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA-----G---------L--------ERAVEVLSILVKCKEGRE 289 (372)
Q Consensus 232 ~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~-----~---------~--------e~a~~~L~~L~~~~~~~~ 289 (372)
.-...++..+..|...+++...+.+.+.++.+.+.|.. + . ..=...|+.|+..+.|.+
T Consensus 79 ~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~ 158 (226)
T PF14666_consen 79 KYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGLK 158 (226)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHHH
Confidence 45556777777888888888888888888888887721 1 1 112478889999999998
Q ss_pred HHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 290 EMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 290 ~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
.+-. .+.+..+..+....+. ......+|.++=...+.. .=..|-..+.++++.+|..|.+.|+.+-
T Consensus 159 lLe~-~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~--------~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 159 LLER-WNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGH--------PRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHH-CCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccH--------HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 7777 7899999998876432 222222444442221111 1123344678899999999999998653
No 437
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=48.75 E-value=3.2 Score=37.29 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=28.3
Q ss_pred CccccCCcccCCCceec----CCc--hHhhHHHHHHHHhcCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVIL----SSG--HTFDRASIQRWLDSGHRTCPITKLP 52 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~----~cg--h~~c~~ci~~~~~~~~~~CP~c~~~ 52 (372)
.-.||+|+..-.--++. .-| +-+|..|-.+|-.. ...||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 44899999853222221 234 33577788887754 6689999874
No 438
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=48.69 E-value=12 Score=30.21 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCC
Q 017402 42 GHRTCPITKLPLP 54 (372)
Q Consensus 42 ~~~~CP~c~~~~~ 54 (372)
..++||.|+.++.
T Consensus 127 ~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 127 LNFTCPRCGAMLD 139 (158)
T ss_pred cCCcCCCCCCEee
Confidence 3789999999877
No 439
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=47.51 E-value=8.6 Score=34.10 Aligned_cols=24 Identities=25% Similarity=0.714 Sum_probs=16.0
Q ss_pred CccccCCcccCC-Cc--eecCCchHhh
Q 017402 8 DFKCPISLEIMS-DP--VILSSGHTFD 31 (372)
Q Consensus 8 ~~~C~ic~~~~~-~P--v~~~cgh~~c 31 (372)
.|.||+|...|. ++ .....||+|.
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd 28 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFD 28 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCc
Confidence 478999999875 22 2334577774
No 440
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.23 E-value=8 Score=36.50 Aligned_cols=66 Identities=26% Similarity=0.487 Sum_probs=43.9
Q ss_pred CCCCccccCC-cccCCCceec--CCchHhhHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCccHHHHHHHHHHh
Q 017402 5 FPDDFKCPIS-LEIMSDPVIL--SSGHTFDRASIQRWLDSGH-RTCPITKLPLPDQPSLIPNHALRSLISNFT 73 (372)
Q Consensus 5 ~~~~~~C~ic-~~~~~~Pv~~--~cgh~~c~~ci~~~~~~~~-~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~ 73 (372)
.++.+.|++| ...|.+-+++ .|..+||..||.+.+.... ..|+.|... -..+.++..++.......
T Consensus 216 ~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~~---~~~~~~p~~~r~~~n~~~ 285 (448)
T KOG0314|consen 216 LPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNVL---ADDLLPPKTLRDTINRIL 285 (448)
T ss_pred CCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhccc---ccccCCchhhHHHHHHHH
Confidence 5678999999 7889998876 4889999999988765322 234444332 234555666655554443
No 441
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.08 E-value=19 Score=26.49 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=17.5
Q ss_pred CCCCccccCCcccC----CCceecC-CchHhhHHHH
Q 017402 5 FPDDFKCPISLEIM----SDPVILS-SGHTFDRASI 35 (372)
Q Consensus 5 ~~~~~~C~ic~~~~----~~Pv~~~-cgh~~c~~ci 35 (372)
+-....||-|+.-| ++|++.| ||.+|-++.+
T Consensus 6 LGtKridPetg~KFYDLNrdPiVsPytG~s~P~s~f 41 (129)
T COG4530 6 LGTKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYF 41 (129)
T ss_pred ccccccCccccchhhccCCCccccCcccccchHHHH
Confidence 34455677777644 4666554 6666644433
No 442
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=46.94 E-value=2.2e+02 Score=30.23 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhhHHHHHHHHHHH--hCCHhHHHHHHhccchHHHHHHHHhcCC
Q 017402 232 REKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSIL--VKCKEGREEMMRVSGCVGVFVKMLKTGS 309 (372)
Q Consensus 232 ~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~a~~~L~~L--~~~~~~~~~i~~~~g~i~~L~~ll~~~~ 309 (372)
.++..+.-+|.++|.-++-..+ ..+|.|++-|.-....+ +-.|+ +-++-+-..-...+..+|.+..-|.+.+
T Consensus 946 ~vra~~vvTlakmcLah~~LaK----r~~P~lvkeLe~~~~~a--iRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~ 1019 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAK----RLMPMLVKELEYNTAHA--IRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPS 1019 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHhhhHHH--HhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCch
Confidence 4566667777777764432111 14566665553321111 11222 2233333332233568999999999999
Q ss_pred hhHHHhHHHHHHHHhcCCHHHHHHHHhcC-hhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402 310 SRAVQCSLFTLSCLCCCSQEICGDSRKEG-VLDICMGLLEDDNEKVRRNANNLIQT 364 (372)
Q Consensus 310 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~~~~l~~ll~~~~~~v~~~a~~~L~~ 364 (372)
+-+++++...|.+|-.. ..+.-.| ..-.++.-+-+.++.+|.-|..++.-
T Consensus 1020 ~iVRrqt~ilL~rLLq~-----~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~ 1070 (1529)
T KOG0413|consen 1020 VIVRRQTIILLARLLQF-----GIVKWNGELFIRFMLALLDANEDIRNDAKFYISE 1070 (1529)
T ss_pred HHHHHHHHHHHHHHHhh-----hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 99999999999998765 3333345 22233333445688899988888853
No 443
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.88 E-value=3.5e+02 Score=27.94 Aligned_cols=76 Identities=18% Similarity=0.105 Sum_probs=51.2
Q ss_pred CCHHHHHHHHhhc--CCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402 131 GAVSAVLNCLKIH--SDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK 208 (372)
Q Consensus 131 g~i~~L~~lL~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~ 208 (372)
.+...+..++.+. +....+...|++++.++..-.. +. + ...+..|--++++.....|-.|.++|..+|.....+
T Consensus 241 ~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~-r~-l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS-RE-L--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred cchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH-hh-c--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence 3444555555431 4567789999999999864321 11 1 116677777777888889999999999998776544
Q ss_pred hh
Q 017402 209 AT 210 (372)
Q Consensus 209 ~~ 210 (372)
..
T Consensus 317 v~ 318 (865)
T KOG1078|consen 317 VT 318 (865)
T ss_pred cc
Confidence 33
No 444
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=46.86 E-value=1.3e+02 Score=31.33 Aligned_cols=114 Identities=12% Similarity=0.132 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHhc-----cchHHHH
Q 017402 232 REKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMRV-----SGCVGVF 301 (372)
Q Consensus 232 ~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~~-----~g~i~~L 301 (372)
.+.-.+++.|+.|+.+..-...+++.|+|..|+..=..+ ...++..|. ......+.++.. ..++..-
T Consensus 368 ~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~~~~g~s~cly~~~---~~q~~mervc~~p~~v~~~vv~~~ 444 (1516)
T KOG1832|consen 368 PLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSETFYGLSSCLYTIG---SLQGIMERVCALPLVVIHQVVKLA 444 (1516)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchhhhhhHHHHHHHHh---hhhhHHHHHhhccHHHHHHHHHHH
Confidence 677889999999999998889999999987776544221 333444443 333333433332 1244444
Q ss_pred HHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc
Q 017402 302 VKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLED 349 (372)
Q Consensus 302 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~ 349 (372)
+.+|.......+.++.. ...+|.........+=....+..|+.++++
T Consensus 445 ~~l~~cs~~~~~~~~~~-ff~~~f~frail~~fd~~d~l~~l~~~~~~ 491 (1516)
T KOG1832|consen 445 IELLDCSQDQARKNSAL-FFAAAFVFRAILDAFDAQDSLQKLLAILKD 491 (1516)
T ss_pred HHHHhcchhhccchHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55665544455555543 334444335555555556677777777753
No 445
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=46.37 E-value=93 Score=27.76 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=48.5
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHH-HHHhhcCCHHHHHHHHhhc----------CCChhHHHHHHHHHh
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASR-RKLTESGAVSAVLNCLKIH----------SDGFTLQEKALSLLL 158 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~lL~~~----------~~~~~~~~~a~~~L~ 158 (372)
|.++.++.+. +++.|..++..|..+...-+... ..+.+.|..+.+-+.|... ..+..+...+..+|.
T Consensus 122 P~iL~llDD~--~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 122 PPILNLLDDY--SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred hhHHHHhcCC--CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 6677778765 89999999999999997544222 2377788877777666531 234456677777777
Q ss_pred cCC
Q 017402 159 NLS 161 (372)
Q Consensus 159 ~l~ 161 (372)
.|.
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 763
No 446
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.18 E-value=2.4e+02 Score=27.95 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=34.6
Q ss_pred ChHHHHHH-HhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 175 AVSRVVAA-LRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 175 ~i~~lv~~-L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
++..++.. .++++.++|..|.-+|.-.+..+ ...++..+++|.+.....++.-.+-+|.-.|...
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 44444444 34566777777777776665443 2344444555554444355555555665544433
No 447
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=46.17 E-value=9.8 Score=23.94 Aligned_cols=13 Identities=38% Similarity=1.017 Sum_probs=9.8
Q ss_pred CCCCCccccCCcc
Q 017402 4 QFPDDFKCPISLE 16 (372)
Q Consensus 4 ~~~~~~~C~ic~~ 16 (372)
.+++++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 3677888888864
No 448
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=45.64 E-value=21 Score=38.79 Aligned_cols=48 Identities=29% Similarity=0.555 Sum_probs=32.3
Q ss_pred CCccccCCcc--cCCCc-eecCCchHhhHHHHHHHHhc---C------CCCCCCCCCCCC
Q 017402 7 DDFKCPISLE--IMSDP-VILSSGHTFDRASIQRWLDS---G------HRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~--~~~~P-v~~~cgh~~c~~ci~~~~~~---~------~~~CP~c~~~~~ 54 (372)
.+..|-||.- +---| +.+.|+|.|...|..+.+.. + -..||.|..+..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 4567888873 23345 56899999988876554432 1 236999988776
No 449
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=45.56 E-value=19 Score=36.32 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=46.5
Q ss_pred CCCCccccCCcccCCCcee-cCCchHhhHHHHHHHHh-----cCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402 5 FPDDFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLD-----SGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR 74 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~-----~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~ 74 (372)
..-.+.|||+.-.+.=|.. ..|+|.-|..-. |+. .....||+|.+... ...+..+..+...+.....
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~~-~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPARGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAAP-FEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred ceeEecCCcccceeecCCcccccccceecchh--hhHHhccCCCeeeCccCCcccc-ccchhhhHHHHHHHhhccC
Confidence 3446889999999988875 579986543322 221 12357999998887 7778777777777666655
No 450
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=45.37 E-value=11 Score=37.87 Aligned_cols=8 Identities=25% Similarity=0.293 Sum_probs=4.9
Q ss_pred cccCCccc
Q 017402 10 KCPISLEI 17 (372)
Q Consensus 10 ~C~ic~~~ 17 (372)
.||-|...
T Consensus 3 ~Cp~Cg~~ 10 (645)
T PRK14559 3 ICPQCQFE 10 (645)
T ss_pred cCCCCCCc
Confidence 56666654
No 451
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=45.29 E-value=17 Score=36.84 Aligned_cols=49 Identities=20% Similarity=0.508 Sum_probs=36.8
Q ss_pred CCCccccCCcc--cCCCceecCCchH-----hhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402 6 PDDFKCPISLE--IMSDPVILSSGHT-----FDRASIQRWLDSG-HRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~--~~~~Pv~~~cgh~-----~c~~ci~~~~~~~-~~~CP~c~~~~~ 54 (372)
.|.-.|-||.. .-.+|..-||.++ .++.|+.+|..-+ ...|-.|+.++.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 45678999984 4567777677543 5889999999754 457999987765
No 452
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=45.16 E-value=2.3 Score=29.66 Aligned_cols=36 Identities=17% Similarity=0.444 Sum_probs=26.2
Q ss_pred ccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
-.|-||.+..+.| |..||..|-.+ ...|..|+..+-
T Consensus 55 ~kC~iCk~~vHQ~-----GshYC~tCAY~-----KgiCAMCGKki~ 90 (100)
T KOG3476|consen 55 AKCRICKQLVHQP-----GSHYCQTCAYK-----KGICAMCGKKIL 90 (100)
T ss_pred chhHHHHHHhcCC-----cchhHhHhhhh-----hhHHHHhhhHhh
Confidence 3688999988887 65688888754 446777776554
No 453
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=45.08 E-value=90 Score=25.85 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=53.8
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 175 AVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 175 ~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
.++.++++.-+.+..++..|...+..... .-++.-...+|.|+.|..+++. .++..|...+..+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~-----qGLvnP~~cvp~lIAL~ts~~~-~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR-----QGLVNPKQCVPTLIALETSPNP-SIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh-----cCCCChHHHHhHhhhhhCCCCh-HHHHHHHHHHHHHHHHh
Confidence 45677777778899999999999888753 2334423689999999999877 99999999999997643
No 454
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=44.99 E-value=9 Score=23.76 Aligned_cols=13 Identities=38% Similarity=1.017 Sum_probs=7.3
Q ss_pred CCCCCccccCCcc
Q 017402 4 QFPDDFKCPISLE 16 (372)
Q Consensus 4 ~~~~~~~C~ic~~ 16 (372)
.+++++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 4678888888864
No 455
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=44.75 E-value=32 Score=18.22 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcccccchhhhccccchHHHHHHHhh
Q 017402 190 CRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ 226 (372)
Q Consensus 190 ~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~ 226 (372)
+|..|+++|..+.. ..+++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd-----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD-----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S-----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-----------HHHHHHHHHHhc
Confidence 45677777777642 357888887765
No 456
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=44.74 E-value=28 Score=28.51 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCC
Q 017402 43 HRTCPITKLPLPD 55 (372)
Q Consensus 43 ~~~CP~c~~~~~~ 55 (372)
.++||.|+..+.+
T Consensus 132 ~F~Cp~Cg~~L~~ 144 (176)
T COG1675 132 GFTCPKCGEDLEE 144 (176)
T ss_pred CCCCCCCCchhhh
Confidence 5899999998873
No 457
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.62 E-value=3 Score=28.54 Aligned_cols=12 Identities=25% Similarity=0.359 Sum_probs=8.0
Q ss_pred ccccCCcccCCC
Q 017402 9 FKCPISLEIMSD 20 (372)
Q Consensus 9 ~~C~ic~~~~~~ 20 (372)
+.||+|.--+.-
T Consensus 2 llCP~C~v~l~~ 13 (88)
T COG3809 2 LLCPICGVELVM 13 (88)
T ss_pred cccCcCCceeee
Confidence 468988865443
No 458
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=43.97 E-value=10 Score=37.88 Aligned_cols=50 Identities=26% Similarity=0.304 Sum_probs=36.8
Q ss_pred CCCCccccCCcccCCCcee----------cCCchHh--------------------hHHHHHHHHhc-------CCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPVI----------LSSGHTF--------------------DRASIQRWLDS-------GHRTCP 47 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~----------~~cgh~~--------------------c~~ci~~~~~~-------~~~~CP 47 (372)
++|--+|+-|++-|.||-. +.||..| |..|-.++-.- ....||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 5677789999998888731 2578776 88898877642 234699
Q ss_pred CCCCCCC
Q 017402 48 ITKLPLP 54 (372)
Q Consensus 48 ~c~~~~~ 54 (372)
.|+..+.
T Consensus 178 ~CGP~~~ 184 (750)
T COG0068 178 KCGPHLF 184 (750)
T ss_pred ccCCCeE
Confidence 9998765
No 459
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.67 E-value=9.9 Score=34.59 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccccc
Q 017402 109 SLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLV 171 (372)
Q Consensus 109 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~ 171 (372)
..+.|.++|...+++.+.+.+.||++.++.--.-++.+|-+++-.+-++.+|..+ .+|++.|.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 4567899999889999999999999988755433367888999999999998766 66766444
No 460
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.63 E-value=75 Score=19.33 Aligned_cols=28 Identities=25% Similarity=0.486 Sum_probs=22.1
Q ss_pred ChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 338 GVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 338 g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
|.-..|-+++..+++..|..|..+|..|
T Consensus 17 ~Ar~lL~evl~~~~~~q~~eA~~LL~~l 44 (44)
T TIGR03504 17 GARELLEEVIEEGDEAQRQEARALLAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 3566677778888999999999998753
No 461
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=43.50 E-value=1.3e+02 Score=22.98 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHH---hcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhc-ChhHHHHHH
Q 017402 272 ERAVEVLSILVKCKEGREEMMRVSGCVGVFVKML---KTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKE-GVLDICMGL 346 (372)
Q Consensus 272 e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~-g~~~~l~~l 346 (372)
...+.-|+.++........+ +..|.+-| +..+....-.|+.+|..|..+++ ++...+.+. ..+..|..+
T Consensus 21 ~~~l~eIa~~t~~~~~~~~I------~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f 94 (125)
T PF01417_consen 21 GKLLAEIAQLTYNSKDCQEI------MDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDF 94 (125)
T ss_dssp HHHHHHHHHHTTSCHHHHHH------HHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG-
T ss_pred HHHHHHHHHHHhccccHHHH------HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhccee
Confidence 34555566666654433333 34455555 33455667789999998887654 566666443 456666555
Q ss_pred hh--c-c---cHHHHHHHHHHHHHHhcC
Q 017402 347 LE--D-D---NEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 347 l~--~-~---~~~v~~~a~~~L~~l~~~ 368 (372)
-- . | ...||++|..++..|.+.
T Consensus 95 ~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 95 QYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp --BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred eccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 32 1 2 245999999999998763
No 462
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=42.87 E-value=2.4e+02 Score=24.93 Aligned_cols=126 Identities=25% Similarity=0.237 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhhc-Ch---HHHHHHhhcCCHH-HHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc-ccccccCChHH
Q 017402 105 SKLESLTQLTKLSKR-DS---ASRRKLTESGAVS-AVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK-VGLVAEGAVSR 178 (372)
Q Consensus 105 ~~~~a~~~L~~l~~~-~~---~~~~~i~~~g~i~-~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~~g~i~~ 178 (372)
....+++.|....+. ++ ..+..+++.++++ -|+.+|....++..+...+++.|.+|+..-+.. +..
T Consensus 10 dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~-------- 81 (266)
T PF04821_consen 10 DCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELLVESQ-------- 81 (266)
T ss_pred hHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHhccCC--------
Confidence 345666666555533 22 3466777778777 588888865568899999999999998752221 000
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhc----------CCchHHHHHHHHHHHhhcCCC
Q 017402 179 VVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN----------GKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 179 lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~----------~~~~~~~~~a~~aL~~L~~~~ 248 (372)
..+...+.........+ ..+|..+.. .+++..++..+.. +.+..+.+..+..++|+-.-+
T Consensus 82 ------~~~~~~~~~~~~l~~~l---~~yK~afl~-~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip 151 (266)
T PF04821_consen 82 ------PKDKNQRRNIPELLKYL---QSYKEAFLD-PRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIP 151 (266)
T ss_pred ------CCChHHHHHHHHHHHHH---HHHHHHHcc-cHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 00222222222222222 245555555 5666666655421 111356677777888876543
No 463
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=42.63 E-value=1.6e+02 Score=30.48 Aligned_cols=115 Identities=17% Similarity=0.081 Sum_probs=73.8
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhh
Q 017402 133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATI 211 (372)
Q Consensus 133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i 211 (372)
+..+.+.+. +++.......+.++.++..-+.....= ....++.-..-.+..-..+......+|..++..+ +....+
T Consensus 443 W~~l~~~~~--~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 443 WKALLKSLD--SDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHHhhc--CCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 344455555 567777777777777776432221110 2223333333333334556677888999998766 333334
Q ss_pred ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhH
Q 017402 212 GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRK 252 (372)
Q Consensus 212 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 252 (372)
....+++..++.++-++++ ++...|...|..... .++|.
T Consensus 520 ~~d~~~~~~i~s~lfsp~~-~l~qaA~~llk~~~d-~~~R~ 558 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDD-DLYQAAQDLLKQAFD-VDGRL 558 (727)
T ss_pred HcCcchhhHHHhheeCCCh-HHHHHHHHHHHHHhc-CCcHH
Confidence 3337999999999999988 999999999999885 44443
No 464
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=42.62 E-value=64 Score=25.67 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=20.0
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhc
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCC 325 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 325 (372)
-+..|+.+|++.++.+...|+.+|.+.-.
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 48889999988888888888888887543
No 465
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=42.41 E-value=1.4e+02 Score=22.17 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=52.4
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
.+..+.+.+....+.-+-.++.++-.++++...-..........+.+.......++.+|.+..+++..-.+..
T Consensus 38 iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~~~~ 110 (114)
T cd03562 38 IVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWEERF 110 (114)
T ss_pred HHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCC
Confidence 4556666777777777778888888888775444444444445777777778889999999999887665544
No 466
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=42.17 E-value=20 Score=20.40 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=6.9
Q ss_pred CCCCCCCCCC
Q 017402 43 HRTCPITKLP 52 (372)
Q Consensus 43 ~~~CP~c~~~ 52 (372)
...||.|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3478888764
No 467
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=41.83 E-value=87 Score=19.61 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=30.8
Q ss_pred HHHHhcCCHHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHH
Q 017402 320 LSCLCCCSQEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQT 364 (372)
Q Consensus 320 L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~ 364 (372)
|..|... +-....+.+.|+...+-.+-++ .+++++..|..+++.
T Consensus 3 L~~L~~l-~it~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~ 47 (53)
T PF08711_consen 3 LKVLEKL-PITVELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKK 47 (53)
T ss_dssp HHHHHCS-S-SHHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred HHHhhcC-CCCHHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3334433 3345667778888888888888 899999999999864
No 468
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.68 E-value=4.3e+02 Score=27.54 Aligned_cols=172 Identities=10% Similarity=0.172 Sum_probs=80.9
Q ss_pred CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHH-HHH----HHh---cCChHHHHHHHHHHHHh-
Q 017402 132 AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSR-VVA----ALR---FGSPDCRAIAATIITSL- 201 (372)
Q Consensus 132 ~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~-lv~----~L~---~~~~~~~~~a~~~L~~l- 201 (372)
.+|.++++|. .++.-+...|+.++-.+-.- +.+...+...+-+.+ +.. +.+ .+...--++...++..+
T Consensus 499 ~~p~li~~L~--a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii 576 (960)
T KOG1992|consen 499 LLPRLIRFLE--AESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRII 576 (960)
T ss_pred HHHHHHHhcc--CcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHH
Confidence 4677888888 67788888999998775444 444555555443332 222 221 12111112222232222
Q ss_pred cccccchhhhccccchHHHHHH----HhhcCCchHHHHHHHHH----HHhhcCCCchhHHHHhcCchHHHHHHHhhh---
Q 017402 202 AVVEVNKATIGDYPYAINALVS----LLQNGKLIREKKEAATA----LYALTSFPENRKRVVSCGAVPILMRLADAG--- 270 (372)
Q Consensus 202 s~~~~~~~~i~~~~g~i~~Lv~----ll~~~~~~~~~~~a~~a----L~~L~~~~~~~~~i~~~g~v~~L~~ll~~~--- 270 (372)
...++.-.... ...+..|.+ ..++++++..-..-... +...+..+...-...+...+|.+-..+..+
T Consensus 577 ~i~~~~i~p~~--~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~E 654 (960)
T KOG1992|consen 577 SILQSAIIPHA--PELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQE 654 (960)
T ss_pred HhCHHhhhhhh--hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222111111 123333333 33444443433332232 223333332222222334666666666555
Q ss_pred -HHHHHHHHHHHhCCHhH--------------HHHHHhccchHHHHHHHHhc
Q 017402 271 -LERAVEVLSILVKCKEG--------------REEMMRVSGCVGVFVKMLKT 307 (372)
Q Consensus 271 -~e~a~~~L~~L~~~~~~--------------~~~i~~~~g~i~~L~~ll~~ 307 (372)
-..++.+|+.|.....+ ...+.+..|-++.++++++.
T Consensus 655 fiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~a 706 (960)
T KOG1992|consen 655 FIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQA 706 (960)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHH
Confidence 23456666655553333 22455567888888888753
No 469
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=41.58 E-value=9.2 Score=34.45 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=29.4
Q ss_pred CCccccCCcccCCCcee-c--CCch--HhhHHHHHHHHhcCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVI-L--SSGH--TFDRASIQRWLDSGHRTCPITKLP 52 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~-~--~cgh--~~c~~ci~~~~~~~~~~CP~c~~~ 52 (372)
..-.||+|+..-.--++ . .-|+ -+|..|-.+|--. ...||.|+..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-RVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 45789999985322222 1 2343 3577888887754 6689999863
No 470
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=41.32 E-value=12 Score=23.78 Aligned_cols=10 Identities=40% Similarity=0.949 Sum_probs=5.3
Q ss_pred CCCCCCCCCC
Q 017402 45 TCPITKLPLP 54 (372)
Q Consensus 45 ~CP~c~~~~~ 54 (372)
.||+|+.++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 8999988776
No 471
>PRK11595 DNA utilization protein GntX; Provisional
Probab=41.09 E-value=18 Score=31.11 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=25.9
Q ss_pred cccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 10 KCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 10 ~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.|.+|.+.+..+ ....|..|...+-.. ...||.|+.+..
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~-~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTL-KTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcc-cCcCccCCCcCC
Confidence 699999876322 223788887765332 357999987654
No 472
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=40.83 E-value=9.2 Score=18.96 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=5.5
Q ss_pred ccccCCcccCCC
Q 017402 9 FKCPISLEIMSD 20 (372)
Q Consensus 9 ~~C~ic~~~~~~ 20 (372)
|.|++|...+.+
T Consensus 1 ~~C~~C~~~~~~ 12 (24)
T PF13894_consen 1 FQCPICGKSFRS 12 (24)
T ss_dssp EE-SSTS-EESS
T ss_pred CCCcCCCCcCCc
Confidence 346666655554
No 473
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.79 E-value=1e+02 Score=29.72 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=53.8
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHHHH
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLEDD--NEKVRRNANNLIQ 363 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~L~ 363 (372)
++..|.+.+.+.++.++..|+.+|-.+.++.. .....+.+.+++.-++.+.+.. ...||+++..+|.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 56677777777788999999998887777654 5556888889999999988864 7789999888885
No 474
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=40.36 E-value=1.7e+02 Score=26.79 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=51.1
Q ss_pred HHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhcC---ChhHHHhHHHHHHHHhcCCHHHHHHH------HhcChhHH
Q 017402 273 RAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKTG---SSRAVQCSLFTLSCLCCCSQEICGDS------RKEGVLDI 342 (372)
Q Consensus 273 ~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~------~~~g~~~~ 342 (372)
.|+..+..+...+.....+.. +.+.+..|++++... ...++..|+.+|..++.........+ +.+|++..
T Consensus 241 lAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~ 320 (329)
T PF06012_consen 241 LAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQ 320 (329)
T ss_pred HHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHH
Confidence 466666667777777777777 345899999999753 45778999999999998754443333 23566666
Q ss_pred HHH
Q 017402 343 CMG 345 (372)
Q Consensus 343 l~~ 345 (372)
+++
T Consensus 321 llR 323 (329)
T PF06012_consen 321 LLR 323 (329)
T ss_pred HHH
Confidence 554
No 475
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=40.09 E-value=2.6e+02 Score=24.65 Aligned_cols=176 Identities=14% Similarity=0.126 Sum_probs=98.3
Q ss_pred CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc--------cccccCChHHHHHHHhcCC----hHHHHHHHHHH
Q 017402 131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV--------GLVAEGAVSRVVAALRFGS----PDCRAIAATII 198 (372)
Q Consensus 131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~--------~i~~~g~i~~lv~~L~~~~----~~~~~~a~~~L 198 (372)
|.-+-+..++-++-.+....+.++.+|..|...+++.. .+.=.+.+|.++..+.+++ ...-...+..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 44555555554333456678888888888766544311 1111234444445554545 13345666777
Q ss_pred HHhcccccchhhhccccchHHHHHHHhhcCCc---hHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----H
Q 017402 199 TSLAVVEVNKATIGDYPYAINALVSLLQNGKL---IREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----L 271 (372)
Q Consensus 199 ~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~---~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~ 271 (372)
..++... . .+.+..++.....+.. .+....++..|++-...+- +...+..|+.+|.++ +
T Consensus 140 a~~a~~~-~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~------~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 140 AQVAEAQ-G-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH------EFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HHHHHhC-C-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHhCCcHHHH
Confidence 7777221 1 1223333333333221 2556666666655432221 223556788888665 7
Q ss_pred HHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhc
Q 017402 272 ERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC 325 (372)
Q Consensus 272 e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 325 (372)
...+.+|..+-..-+-+.... ...+.+|.+++++ .....|..+|-++-.
T Consensus 206 ~~~L~iL~~ll~~~d~~~~~~--~dlispllrlL~t---~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 206 RKTLQILKVLLPHVDMRSPHG--ADLISPLLRLLQT---DLWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHHhccccCCCCcc--hHHHHHHHHHhCC---ccHHHHHHHHHHHHh
Confidence 788888988887655554422 4588999999965 345667777766543
No 476
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.08 E-value=10 Score=34.10 Aligned_cols=44 Identities=32% Similarity=0.515 Sum_probs=33.2
Q ss_pred ccccCCcccCC------CceecC--------CchHhhHHHHHHHHhcCCCCCCCCCCC
Q 017402 9 FKCPISLEIMS------DPVILS--------SGHTFDRASIQRWLDSGHRTCPITKLP 52 (372)
Q Consensus 9 ~~C~ic~~~~~------~Pv~~~--------cgh~~c~~ci~~~~~~~~~~CP~c~~~ 52 (372)
-.|.+|...+. .|.+.. |||+.|..|+..-.......||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 34777776554 455666 999999999999876545789999764
No 477
>PRK01343 zinc-binding protein; Provisional
Probab=38.73 E-value=34 Score=22.18 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=19.4
Q ss_pred CccccCCcccCCCceecCCchHhhHHHHHHHHhc
Q 017402 8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS 41 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~ 41 (372)
...||+|...+..+..--|....-..=+.+|+.+
T Consensus 9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e 42 (57)
T PRK01343 9 TRPCPECGKPSTREAYPFCSERCRDIDLNRWLSG 42 (57)
T ss_pred CCcCCCCCCcCcCCCCcccCHHHhhhhHHHHhCC
Confidence 5789999998765543334432111125667765
No 478
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=38.44 E-value=3.1e+02 Score=25.04 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhc-CCCCccccccccccCChHHHHHHH
Q 017402 105 SKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLN-LSLDDDNKVGLVAEGAVSRVVAAL 183 (372)
Q Consensus 105 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~lv~~L 183 (372)
.|.-....|..+.. .+ ....++..+..++.+ +.++.....++.+|.. +..- ..-....++..+.+-+
T Consensus 3 ~r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~K-E~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl 70 (339)
T PF12074_consen 3 QRVLHASMLSSLPS-SS------LSSKIVQGLSPLLSK-ESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGL 70 (339)
T ss_pred HHHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHh
Confidence 34445555555554 22 233456666777764 4667777777777755 2211 1111234556666666
Q ss_pred hcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhc
Q 017402 184 RFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN 227 (372)
Q Consensus 184 ~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~ 227 (372)
++....+|..-...+........+..........++.|+..++.
T Consensus 71 ~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 114 (339)
T PF12074_consen 71 KDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKE 114 (339)
T ss_pred cCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHH
Confidence 66566677766666665543222222222213688888888854
No 479
>KOG3475 consensus 60S ribosomal protein L37 [Translation, ribosomal structure and biogenesis]
Probab=38.41 E-value=21 Score=24.87 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.5
Q ss_pred chHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 27 GHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 27 gh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.|+.|+.|-.+.+.....+|..|.-+-.
T Consensus 15 shtlC~RCG~~syH~QKstC~~CGYpaa 42 (92)
T KOG3475|consen 15 SHTLCRRCGRRSYHIQKSTCSSCGYPAA 42 (92)
T ss_pred chHHHHHhCchhhhhhcccccccCCcch
Confidence 5899999998877666778999986654
No 480
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=38.37 E-value=19 Score=35.31 Aligned_cols=39 Identities=15% Similarity=0.364 Sum_probs=24.4
Q ss_pred CccccCCcc-----cC-CCcee--cCCchHhhHHHHHHHHhcCCCCCCCCC
Q 017402 8 DFKCPISLE-----IM-SDPVI--LSSGHTFDRASIQRWLDSGHRTCPITK 50 (372)
Q Consensus 8 ~~~C~ic~~-----~~-~~Pv~--~~cgh~~c~~ci~~~~~~~~~~CP~c~ 50 (372)
-|.|.+|.. .| .+-+. ..||+.|++.|..+ ....||.|-
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCchH
Confidence 467888843 12 22222 24899998887754 455599994
No 481
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=38.35 E-value=4.2e+02 Score=26.53 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=71.3
Q ss_pred hhHHHHhhc--cCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc-CCChhHHHHHHHHHhcCCCCccc
Q 017402 90 QTLISVLTS--KSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH-SDGFTLQEKALSLLLNLSLDDDN 166 (372)
Q Consensus 90 ~~li~~L~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~~~a~~~L~~l~~~~~~ 166 (372)
+.+...|.. ...+.+.+.-++++|+|+-. + ..++.|...+... ..+..++..|+.+|..++.....
T Consensus 489 ~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~ 557 (618)
T PF01347_consen 489 PYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE 557 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH
Confidence 344455542 22356778888999998754 1 2577777777732 23677899999999987544322
Q ss_pred cccccccCChHHHHHHHhc--CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHH
Q 017402 167 KVGLVAEGAVSRVVAALRF--GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATAL 241 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL 241 (372)
-+.+.+..++.+ .+.++|..|..+|...- + . ...+..+...+..+.+.++.......|
T Consensus 558 -------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~--P-~-------~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 558 -------KVREILLPIFMNTTEDPEVRIAAYLILMRCN--P-S-------PSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp -------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT-------------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred -------HHHHHHHHHhcCCCCChhHHHHHHHHHHhcC--C-C-------HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 224667777765 46888888877666531 1 1 245566666666555446655554443
No 482
>PF04641 Rtf2: Rtf2 RING-finger
Probab=38.14 E-value=24 Score=31.11 Aligned_cols=34 Identities=21% Similarity=0.476 Sum_probs=29.7
Q ss_pred CccccCCcccCCCceec-CCchHhhHHHHHHHHhc
Q 017402 8 DFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDS 41 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~ 41 (372)
-..|+|.++.+.+||+. .-|+-|-+.-|.+|+..
T Consensus 34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence 36799999999999975 48999999999999864
No 483
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=37.82 E-value=2.2e+02 Score=28.30 Aligned_cols=97 Identities=12% Similarity=-0.026 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc--cCChHHH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA--EGAVSRV 179 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~l 179 (372)
++..|..++..|+.....-|++ +.+-.++...-++|. +.+..++.....+|..|+.++.+...+.+ ...-..+
T Consensus 288 ~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LS--Dn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 288 DDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLS--DNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hHHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccc--cchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 4566777778777776644433 333336666777787 78889999999999999888766664443 3455667
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcc
Q 017402 180 VAALRFGSPDCRAIAATIITSLAV 203 (372)
Q Consensus 180 v~~L~~~~~~~~~~a~~~L~~ls~ 203 (372)
++++..+..-+|..+...+..+..
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLRI 386 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHHH
Confidence 777777655588877777777643
No 484
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=37.65 E-value=92 Score=23.53 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=44.6
Q ss_pred ChHHHHHHHh-cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHH-HHHHHHHHHhhcCCC
Q 017402 175 AVSRVVAALR-FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIRE-KKEAATALYALTSFP 248 (372)
Q Consensus 175 ~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~-~~~a~~aL~~L~~~~ 248 (372)
.+|.+.+.|. +...+.+..+..++..|+..-.... .++..+++.+-....... .+.++.+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~------~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD------EVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH------HHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4677777787 5678999999999999975433322 355555554433322133 478888888888654
No 485
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=37.58 E-value=16 Score=19.34 Aligned_cols=9 Identities=22% Similarity=0.929 Sum_probs=5.0
Q ss_pred cccCCcccC
Q 017402 10 KCPISLEIM 18 (372)
Q Consensus 10 ~C~ic~~~~ 18 (372)
.||||.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 466665544
No 486
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=37.49 E-value=1.2e+02 Score=22.86 Aligned_cols=38 Identities=21% Similarity=0.102 Sum_probs=29.9
Q ss_pred chHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHH
Q 017402 296 GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDS 334 (372)
Q Consensus 296 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 334 (372)
-+++.|+.-|.+.++.+...|..+|...|... +....+
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~ 45 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYL 45 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHH
Confidence 47888999898888899999999999988764 443333
No 487
>PLN03086 PRLI-interacting factor K; Provisional
Probab=37.45 E-value=35 Score=33.62 Aligned_cols=6 Identities=33% Similarity=0.850 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 017402 44 RTCPITK 50 (372)
Q Consensus 44 ~~CP~c~ 50 (372)
..|| |+
T Consensus 479 v~Cp-Cg 484 (567)
T PLN03086 479 LQCP-CG 484 (567)
T ss_pred ccCC-CC
Confidence 3455 54
No 488
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=37.31 E-value=2.4e+02 Score=23.35 Aligned_cols=144 Identities=19% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhc-Ch----HHHHHHhhcC------CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccc
Q 017402 104 ESKLESLTQLTKLSKR-DS----ASRRKLTESG------AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVA 172 (372)
Q Consensus 104 ~~~~~a~~~L~~l~~~-~~----~~~~~i~~~g------~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 172 (372)
.+|..|+..|..+++. ++ .+...+.=.+ .-+.|+..+-. +.++.++..|+.+|..|-.+....-...+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~-Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK-DPSPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc-CCchhHHHHHHHHHHHHHHccHHHHHHHH
Q ss_pred cC--------------------ChHHHHHHHhcC-ChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCc
Q 017402 173 EG--------------------AVSRVVAALRFG-SPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKL 230 (372)
Q Consensus 173 ~g--------------------~i~~lv~~L~~~-~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~ 230 (372)
+- .-..|+..|..+ +..+.......+..|...- ..|....-....+..+-.++.+.+.
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Q ss_pred hHHHHHHHHHHHhhcCCCc
Q 017402 231 IREKKEAATALYALTSFPE 249 (372)
Q Consensus 231 ~~~~~~a~~aL~~L~~~~~ 249 (372)
+++..++.++..+.+.+.
T Consensus 160 -~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 160 -NVRVAALSCLGALLSVQP 177 (182)
T ss_pred -cHHHHHHHHHHHHHcCCC
No 489
>PRK04023 DNA polymerase II large subunit; Validated
Probab=36.74 E-value=25 Score=36.71 Aligned_cols=45 Identities=11% Similarity=-0.115 Sum_probs=28.7
Q ss_pred CCccccCCcccCCCceecCCch-----HhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVILSSGH-----TFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh-----~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
....||-|........--.||. .||..|-. . .+...||.|+....
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~--~-~~~y~CPKCG~El~ 674 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGI--E-VEEDECEKCGREPT 674 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccC--c-CCCCcCCCCCCCCC
Confidence 3467998988753322223873 48998832 2 23467999998876
No 490
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=35.52 E-value=21 Score=20.26 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=20.4
Q ss_pred cccCCcccCCC--ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 10 KCPISLEIMSD--PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 10 ~C~ic~~~~~~--Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.|+.|.+.+.+ .+...-+..|+.. -+.|..|+.++.
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~---------Cf~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPE---------CFKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEeCCcccccc---------CCCCcccCCcCc
Confidence 47778887665 3333344545443 345777776553
No 491
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=35.50 E-value=3.7e+02 Score=26.19 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=47.6
Q ss_pred cccCChHHHHHHHhc-CChHHHHHHHHHHHHhccccc--------------chhhhccccchHHHHHHHhhc-CCchHHH
Q 017402 171 VAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEV--------------NKATIGDYPYAINALVSLLQN-GKLIREK 234 (372)
Q Consensus 171 ~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~--------------~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~ 234 (372)
.+.+.|+.|+.+|.. .+.+++.+|+.+|..+..... .-..+.. ...|..|++.+-. ... ...
T Consensus 59 ~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S-~~~v~~Ll~~mL~~~~~-s~l 136 (475)
T PF04499_consen 59 AEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVS-EETVEKLLDIMLNSQGG-SSL 136 (475)
T ss_pred HHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhC-hHHHHHHHHHHhcCCCc-chH
Confidence 358999999999974 467788888887776643221 1223444 4677777776664 333 566
Q ss_pred HHHHHHHHhhc
Q 017402 235 KEAATALYALT 245 (372)
Q Consensus 235 ~~a~~aL~~L~ 245 (372)
.+++.++..|-
T Consensus 137 vn~v~IlieLI 147 (475)
T PF04499_consen 137 VNGVSILIELI 147 (475)
T ss_pred HHHHHHHHHHH
Confidence 67777666654
No 492
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=34.83 E-value=29 Score=32.54 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=29.2
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHh--cCCCCCCCCCCCCCCCCCCCccHHHH
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD--SGHRTCPITKLPLPDQPSLIPNHALR 66 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~--~~~~~CP~c~~~~~~~~~~~~n~~l~ 66 (372)
+..|.||.|..-|.. ... .+.+. .+.+.|-.|+..+-....-.++...+
T Consensus 126 ~~~Y~Cp~C~kkyt~---------Lea---~~L~~~~~~~F~C~~C~gelveDe~~~~~~e~~ 176 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYTS---------LEA---LQLLDNETGEFHCENCGGELVEDENKLPSKESR 176 (436)
T ss_pred cccccCCccccchhh---------hHH---HHhhcccCceEEEecCCCchhcccccCchHHHH
Confidence 456888888876654 222 22333 25678999988877444444444443
No 493
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=34.17 E-value=3.3e+02 Score=27.84 Aligned_cols=156 Identities=21% Similarity=0.170 Sum_probs=79.2
Q ss_pred ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc----CChHHHHHHH
Q 017402 120 DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF----GSPDCRAIAA 195 (372)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~----~~~~~~~~a~ 195 (372)
.+.+|..+.+.|++..+++.|.++..+..+-..+..++.-|+.+.-+... .---++..+.+|+- ++.+.+..-.
T Consensus 364 ~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~d~lnmdl--df~Slelmi~LL~~ek~~gS~e~~~~~~ 441 (865)
T KOG2152|consen 364 MPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSRDKLNMDL--DFLSLELMIHLLRLEKFEGSHESRDKFT 441 (865)
T ss_pred ChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhhhhhcccc--cchhHHHHHHHHhhhcccCChhhHHHHH
Confidence 57899999999999999999985433333323333333334333222110 11234555666642 3444442111
Q ss_pred HHHHHhcccccchhhhccccchHHHHHHHhhc---------CCc-hHHHHHHHHH-HHhhcCCC---chhHHHHhcCchH
Q 017402 196 TIITSLAVVEVNKATIGDYPYAINALVSLLQN---------GKL-IREKKEAATA-LYALTSFP---ENRKRVVSCGAVP 261 (372)
Q Consensus 196 ~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~---------~~~-~~~~~~a~~a-L~~L~~~~---~~~~~i~~~g~v~ 261 (372)
++ ++ ..|..|.++... .+. ...-..+..+ +.-|++.. -.+..+...|+.+
T Consensus 442 ----n~-----~~-------evir~L~e~~~~gG~~~h~n~~~~t~~~~~lamet~vl~lsSk~~~d~~k~elr~Lg~lq 505 (865)
T KOG2152|consen 442 ----NL-----VK-------EVIRSLCELQLRGGQKVHLNMRNETLGPSSLAMETLVLILSSKRAGDWFKSELRNLGGLQ 505 (865)
T ss_pred ----HH-----HH-------HHHHHHHHHHHhcCCcccccccCCCCCchhhhhheeEEEEeccccchhHHHHHHhcchHH
Confidence 11 11 122222222211 111 0111233344 33344422 2667777889988
Q ss_pred HHHHHHhhh----------------HHHHHHHHHHHhC-CHhHHHHHHh
Q 017402 262 ILMRLADAG----------------LERAVEVLSILVK-CKEGREEMMR 293 (372)
Q Consensus 262 ~L~~ll~~~----------------~e~a~~~L~~L~~-~~~~~~~i~~ 293 (372)
.++..+... .+.++.+|.+.+. ++.++..++.
T Consensus 506 ~iv~~i~~~~~~~~~~~~e~~~~~tL~rC~rvles~s~hn~snq~yLis 554 (865)
T KOG2152|consen 506 HIVSKIETNVSPTSDNGDESSVILTLERCLRVLESVSVHNGSNQGYLIS 554 (865)
T ss_pred HHHHHHHhccCcCCCCcchhhHHHhHHHHHHHhhcccccCcchhHHHHh
Confidence 888877211 3678888888887 5566666555
No 494
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=34.11 E-value=21 Score=22.76 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=19.9
Q ss_pred CccccCCcccCCCc-eecCCchHhhHHHHHH
Q 017402 8 DFKCPISLEIMSDP-VILSSGHTFDRASIQR 37 (372)
Q Consensus 8 ~~~C~ic~~~~~~P-v~~~cgh~~c~~ci~~ 37 (372)
=|.|..|...+.+. ....=|..||..|..+
T Consensus 26 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 26 CFKCSKCGKPLNDGDFYEKDGKPYCKDCYQK 56 (58)
T ss_dssp TSBETTTTCBTTTSSEEEETTEEEEHHHHHH
T ss_pred ccccCCCCCccCCCeeEeECCEEECHHHHhh
Confidence 46777887776655 3445667777777654
No 495
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=33.83 E-value=15 Score=29.21 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCC
Q 017402 42 GHRTCPITKLPLP 54 (372)
Q Consensus 42 ~~~~CP~c~~~~~ 54 (372)
+.+.||.|+..+.
T Consensus 122 ~~f~Cp~Cg~~l~ 134 (147)
T smart00531 122 GTFTCPRCGEELE 134 (147)
T ss_pred CcEECCCCCCEEE
Confidence 3478999998876
No 496
>PRK00420 hypothetical protein; Validated
Probab=33.56 E-value=10 Score=28.48 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCC
Q 017402 42 GHRTCPITKLPLP 54 (372)
Q Consensus 42 ~~~~CP~c~~~~~ 54 (372)
+...||.|+..+.
T Consensus 39 g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 39 GEVVCPVHGKVYI 51 (112)
T ss_pred CceECCCCCCeee
Confidence 4557999988655
No 497
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=33.42 E-value=2.2e+02 Score=21.82 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=41.5
Q ss_pred hHHHHHHHHhcCC----hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHH
Q 017402 297 CVGVFVKMLKTGS----SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI 362 (372)
Q Consensus 297 ~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L 362 (372)
.+..+.+.+.... +.....++.++...... -....+.+.+.++.+.+++.+ +..+..|..+|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~--~~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISW--IPIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT--S-HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh--CCHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 4555555565433 66678888888887663 223456667799999999954 44478887765
No 498
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=33.38 E-value=5.1 Score=37.03 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=26.4
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.-+|.|.+|.+.|.||..+.-.. | .|| ..-...||.|.+.|+
T Consensus 265 iGdyiCqLCK~kYeD~F~LAQHr--C-~RI----V~vEYrCPEC~KVFs 306 (500)
T KOG3993|consen 265 IGDYICQLCKEKYEDAFALAQHR--C-PRI----VHVEYRCPECDKVFS 306 (500)
T ss_pred HHHHHHHHHHHhhhhHHHHhhcc--C-Cee----EEeeecCCccccccc
Confidence 34688888888888886543111 0 011 112467999999887
No 499
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=33.28 E-value=33 Score=30.99 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=33.9
Q ss_pred CccccCCcccCCC----ceecCCc-----hHhhHHHHHHHHhc-CCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSD----PVILSSG-----HTFDRASIQRWLDS-GHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~----Pv~~~cg-----h~~c~~ci~~~~~~-~~~~CP~c~~~~~ 54 (372)
...|-||...... |...+|. ...++.|++.|+.. +...|..|...+.
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 3679999985432 5556653 34589999999974 4678999987666
No 500
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=32.96 E-value=36 Score=21.54 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=19.8
Q ss_pred ccCCcccCCCc---------eec-CCchHhhHHHHHHHHhcCCCCCCCCC
Q 017402 11 CPISLEIMSDP---------VIL-SSGHTFDRASIQRWLDSGHRTCPITK 50 (372)
Q Consensus 11 C~ic~~~~~~P---------v~~-~cgh~~c~~ci~~~~~~~~~~CP~c~ 50 (372)
|.-|...+.++ +.- .|++.||..|=. +.-+.-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~-fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDV-FIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHH-TTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcCh-hhhccccCCcCCC
Confidence 55677777665 122 488899888842 3334456799884
Done!