Query 017402
Match_columns 372
No_of_seqs 296 out of 2368
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 13:50:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 7.2E-35 2.5E-39 266.4 21.0 264 103-370 46-337 (354)
2 3nmz_A APC variant protein; pr 100.0 6.2E-34 2.1E-38 267.7 20.5 259 108-369 167-452 (458)
3 3l6x_A Catenin delta-1; cateni 100.0 1.3E-32 4.5E-37 264.3 25.2 282 83-371 44-388 (584)
4 1xm9_A Plakophilin 1; armadill 100.0 7.3E-33 2.5E-37 263.6 20.4 276 88-370 3-363 (457)
5 3nmz_A APC variant protein; pr 100.0 4.3E-32 1.5E-36 255.2 20.7 280 87-367 70-408 (458)
6 3now_A UNC-45 protein, SD10334 100.0 1.7E-30 5.8E-35 257.5 25.6 275 90-368 424-738 (810)
7 1xm9_A Plakophilin 1; armadill 100.0 2.9E-30 1E-34 245.7 23.7 278 88-372 45-454 (457)
8 3ul1_B Importin subunit alpha- 100.0 3.3E-30 1.1E-34 248.8 22.4 276 88-368 101-388 (510)
9 3now_A UNC-45 protein, SD10334 100.0 1.4E-29 4.9E-34 251.0 23.8 271 90-367 380-694 (810)
10 3tpo_A Importin subunit alpha- 100.0 1.9E-29 6.4E-34 244.8 24.2 276 88-368 120-407 (529)
11 3l6x_A Catenin delta-1; cateni 100.0 6.9E-30 2.4E-34 245.4 20.6 277 88-370 91-479 (584)
12 3ul1_B Importin subunit alpha- 100.0 1.3E-29 4.4E-34 244.7 19.6 277 89-369 59-347 (510)
13 3nmw_A APC variant protein; AR 100.0 1.8E-29 6.3E-34 230.6 16.9 239 89-330 75-339 (354)
14 4b8j_A Importin subunit alpha- 100.0 2.8E-27 9.5E-32 229.7 25.7 275 88-368 118-401 (528)
15 4hxt_A De novo protein OR329; 100.0 1.3E-27 4.6E-32 209.1 20.5 234 131-369 2-243 (252)
16 3tpo_A Importin subunit alpha- 100.0 2.6E-27 8.8E-32 229.8 24.4 272 90-366 165-448 (529)
17 4b8j_A Importin subunit alpha- 100.0 2.9E-27 1E-31 229.6 24.2 275 89-368 76-359 (528)
18 1wa5_B Importin alpha subunit; 100.0 1.7E-26 5.7E-31 224.3 25.5 275 88-368 131-413 (530)
19 4db8_A Armadillo-repeat protei 99.9 3.2E-27 1.1E-31 207.1 17.2 233 86-325 11-251 (252)
20 4db8_A Armadillo-repeat protei 99.9 3.3E-27 1.1E-31 207.0 17.1 232 131-367 12-251 (252)
21 2jdq_A Importin alpha-1 subuni 99.9 8.2E-26 2.8E-30 214.6 27.7 274 87-367 64-347 (450)
22 4hxt_A De novo protein OR329; 99.9 1.4E-26 4.7E-31 202.6 19.4 232 89-327 4-243 (252)
23 1wa5_B Importin alpha subunit; 99.9 8.3E-26 2.8E-30 219.4 24.8 275 87-368 87-371 (530)
24 2jdq_A Importin alpha-1 subuni 99.9 4.9E-25 1.7E-29 209.3 27.8 272 89-367 109-390 (450)
25 1jdh_A Beta-catenin; beta-cate 99.9 2.3E-25 7.9E-30 216.0 24.7 275 87-368 17-340 (529)
26 2z6h_A Catenin beta-1, beta-ca 99.9 2.7E-25 9.2E-30 220.7 23.8 277 85-368 12-337 (644)
27 3tt9_A Plakophilin-2; cell adh 99.9 4.4E-26 1.5E-30 194.6 15.1 195 86-284 7-230 (233)
28 1jdh_A Beta-catenin; beta-cate 99.9 3.6E-25 1.2E-29 214.6 22.4 275 89-369 61-387 (529)
29 2z6h_A Catenin beta-1, beta-ca 99.9 1.1E-24 3.8E-29 216.3 23.2 275 89-369 58-384 (644)
30 3tt9_A Plakophilin-2; cell adh 99.9 1.6E-25 5.5E-30 191.1 10.7 191 131-326 8-230 (233)
31 2z6g_A B-catenin; FULL-length, 99.9 3.7E-24 1.3E-28 216.2 21.3 270 90-367 195-472 (780)
32 2z6g_A B-catenin; FULL-length, 99.9 3.6E-24 1.2E-28 216.2 19.5 270 90-369 153-430 (780)
33 4db6_A Armadillo repeat protei 99.9 1.5E-23 5.3E-28 178.4 20.0 194 172-368 10-210 (210)
34 3opb_A SWI5-dependent HO expre 99.9 3.6E-23 1.2E-27 201.7 18.7 274 91-367 380-728 (778)
35 4db6_A Armadillo repeat protei 99.9 4.6E-23 1.6E-27 175.5 15.5 191 88-284 13-210 (210)
36 3opb_A SWI5-dependent HO expre 99.9 4.9E-22 1.7E-26 193.7 21.8 271 90-366 337-682 (778)
37 1xqr_A HSPBP1 protein; armadil 99.9 1E-21 3.6E-26 174.8 16.7 221 145-367 52-287 (296)
38 1xqr_A HSPBP1 protein; armadil 99.9 2.2E-21 7.4E-26 172.7 17.6 178 102-284 53-239 (296)
39 2kre_A Ubiquitin conjugation f 99.8 1.1E-19 3.8E-24 133.8 5.8 73 3-77 24-96 (100)
40 2kr4_A Ubiquitin conjugation f 99.8 1.3E-19 4.6E-24 129.5 5.0 71 3-75 9-79 (85)
41 1wgm_A Ubiquitin conjugation f 99.8 2.7E-19 9.2E-24 131.2 5.7 72 3-76 17-89 (98)
42 1t1h_A Gspef-atpub14, armadill 99.8 3.8E-19 1.3E-23 125.8 3.8 73 3-76 3-75 (78)
43 3grl_A General vesicular trans 99.7 2.2E-16 7.7E-21 150.3 19.0 269 90-365 24-340 (651)
44 2f42_A STIP1 homology and U-bo 99.7 2E-18 7E-23 139.4 4.2 73 3-76 101-173 (179)
45 2yu4_A E3 SUMO-protein ligase 99.7 5.8E-18 2E-22 123.7 6.0 74 3-77 2-84 (94)
46 3ztg_A E3 ubiquitin-protein li 99.7 5.7E-17 1.9E-21 118.5 6.4 73 3-75 8-82 (92)
47 2c2l_A CHIP, carboxy terminus 99.7 4.9E-17 1.7E-21 144.6 5.1 72 4-76 204-275 (281)
48 3grl_A General vesicular trans 99.6 1.3E-14 4.5E-19 138.3 19.1 276 89-367 62-394 (651)
49 3fl2_A E3 ubiquitin-protein li 99.6 2.4E-16 8.3E-21 121.8 3.9 70 6-75 50-119 (124)
50 1z6u_A NP95-like ring finger p 99.6 9.2E-16 3.1E-20 121.9 3.6 70 5-74 75-144 (150)
51 3lrq_A E3 ubiquitin-protein li 99.5 6.4E-16 2.2E-20 114.4 1.1 70 5-75 19-89 (100)
52 2ecy_A TNF receptor-associated 99.5 5.7E-15 2E-19 100.5 4.6 53 2-54 9-61 (66)
53 2egp_A Tripartite motif-contai 99.5 1.7E-16 5.9E-21 112.4 -3.3 64 2-66 6-75 (79)
54 2y43_A E3 ubiquitin-protein li 99.5 3.4E-15 1.2E-19 110.5 3.2 68 6-75 20-88 (99)
55 3hct_A TNF receptor-associated 99.5 4E-15 1.4E-19 113.7 3.0 73 1-74 11-83 (118)
56 2yur_A Retinoblastoma-binding 99.5 7.8E-15 2.7E-19 102.1 4.1 60 3-62 10-71 (74)
57 2ecw_A Tripartite motif-contai 99.5 2.2E-15 7.4E-20 108.4 0.9 63 3-66 14-81 (85)
58 3htk_C E3 SUMO-protein ligase 99.5 3.8E-15 1.3E-19 125.7 2.1 71 4-75 177-251 (267)
59 2ckl_A Polycomb group ring fin 99.5 9.4E-15 3.2E-19 109.9 3.2 68 5-74 12-84 (108)
60 2djb_A Polycomb group ring fin 99.5 3.3E-14 1.1E-18 98.5 5.1 58 3-62 10-68 (72)
61 3l11_A E3 ubiquitin-protein li 99.5 3.7E-15 1.3E-19 113.5 0.1 70 4-73 11-86 (115)
62 2ckl_B Ubiquitin ligase protei 99.5 9.6E-15 3.3E-19 118.7 2.5 71 5-75 51-122 (165)
63 2ecv_A Tripartite motif-contai 99.5 3.4E-15 1.2E-19 107.3 -0.2 63 3-66 14-81 (85)
64 2ysl_A Tripartite motif-contai 99.5 4.2E-14 1.4E-18 98.3 4.7 55 3-58 15-71 (73)
65 1jm7_B BARD1, BRCA1-associated 99.5 1E-14 3.5E-19 111.3 1.5 67 5-75 19-86 (117)
66 4ayc_A E3 ubiquitin-protein li 99.4 2.6E-14 8.8E-19 112.4 3.1 64 6-73 51-114 (138)
67 2ysj_A Tripartite motif-contai 99.4 6.7E-14 2.3E-18 94.2 4.5 47 3-49 15-63 (63)
68 2csy_A Zinc finger protein 183 99.4 1E-13 3.5E-18 98.4 5.5 60 4-66 11-70 (81)
69 1g25_A CDK-activating kinase a 99.4 6.4E-14 2.2E-18 94.9 3.3 55 7-62 2-61 (65)
70 1jm7_A BRCA1, breast cancer ty 99.4 2.9E-14 1E-18 108.1 1.7 68 6-74 19-88 (112)
71 1rmd_A RAG1; V(D)J recombinati 99.4 3.9E-14 1.3E-18 108.0 1.4 69 5-74 20-89 (116)
72 3hcs_A TNF receptor-associated 99.4 7.8E-14 2.7E-18 113.9 2.8 73 1-74 11-83 (170)
73 2bay_A PRE-mRNA splicing facto 99.4 7E-14 2.4E-18 92.4 1.5 54 8-63 3-57 (61)
74 3knv_A TNF receptor-associated 99.4 1.9E-14 6.6E-19 112.9 -1.5 72 3-74 26-105 (141)
75 3ltm_A Alpha-REP4; protein eng 99.4 3.4E-11 1.2E-15 101.8 18.4 185 129-369 17-205 (211)
76 1oyz_A Hypothetical protein YI 99.4 5.2E-11 1.8E-15 105.4 19.8 219 89-365 25-248 (280)
77 2ecj_A Tripartite motif-contai 99.4 3.1E-13 1.1E-17 89.3 3.8 48 2-49 9-58 (58)
78 2ct2_A Tripartite motif protei 99.3 7E-13 2.4E-17 95.8 5.1 52 3-54 10-67 (88)
79 3ng2_A RNF4, snurf, ring finge 99.3 3.6E-13 1.2E-17 93.0 2.8 57 4-62 6-69 (71)
80 2d8t_A Dactylidin, ring finger 99.3 3.7E-13 1.3E-17 92.8 2.4 50 4-54 11-60 (71)
81 3ltj_A Alpharep-4; protein eng 99.3 8.1E-11 2.8E-15 98.7 17.4 183 129-367 12-198 (201)
82 1e4u_A Transcriptional repress 99.3 9.1E-13 3.1E-17 91.8 4.0 51 4-54 7-61 (78)
83 2ea6_A Ring finger protein 4; 99.3 9.9E-13 3.4E-17 90.2 3.2 52 2-54 9-67 (69)
84 3ltm_A Alpha-REP4; protein eng 99.3 2.7E-10 9.2E-15 96.3 18.5 180 89-326 21-204 (211)
85 3ltj_A Alpharep-4; protein eng 99.3 3.6E-10 1.2E-14 94.7 18.7 177 90-324 17-197 (201)
86 4fdd_A Transportin-1; heat rep 99.3 1.3E-10 4.5E-15 118.8 18.4 267 90-367 131-429 (852)
87 2xeu_A Ring finger protein 4; 99.2 1.2E-12 4.2E-17 88.3 1.4 53 7-61 2-61 (64)
88 2ect_A Ring finger protein 126 99.2 3.8E-12 1.3E-16 89.5 3.6 57 4-62 11-70 (78)
89 1oyz_A Hypothetical protein YI 99.2 7.9E-10 2.7E-14 97.7 17.9 197 127-366 19-220 (280)
90 1bor_A Transcription factor PM 99.2 4E-12 1.4E-16 82.9 1.2 46 5-54 3-48 (56)
91 1chc_A Equine herpes virus-1 r 99.2 1.1E-11 3.6E-16 84.7 3.2 48 6-54 3-51 (68)
92 2ecm_A Ring finger and CHY zin 99.2 1.1E-11 3.7E-16 80.8 2.8 48 6-54 3-54 (55)
93 4fdd_A Transportin-1; heat rep 99.2 1.1E-10 3.7E-15 119.4 11.6 265 92-367 179-471 (852)
94 1iym_A EL5; ring-H2 finger, ub 99.2 1E-11 3.5E-16 80.9 2.5 49 5-54 2-54 (55)
95 4gmo_A Putative uncharacterize 99.1 6.8E-10 2.3E-14 110.4 16.0 189 174-366 34-257 (684)
96 2ep4_A Ring finger protein 24; 99.1 3.2E-11 1.1E-15 83.8 4.3 50 4-54 11-63 (74)
97 2kiz_A E3 ubiquitin-protein li 99.1 3E-11 1E-15 82.7 4.0 49 5-54 11-62 (69)
98 2l0b_A E3 ubiquitin-protein li 99.1 2.1E-11 7.3E-16 88.2 2.9 49 5-54 37-88 (91)
99 2ecn_A Ring finger protein 141 99.1 7.9E-12 2.7E-16 85.9 0.3 50 3-54 10-59 (70)
100 1x4j_A Ring finger protein 38; 99.1 3.2E-11 1.1E-15 84.0 3.1 49 5-54 20-71 (75)
101 1v87_A Deltex protein 2; ring- 99.1 6.5E-11 2.2E-15 89.7 4.2 48 7-54 24-93 (114)
102 4ap4_A E3 ubiquitin ligase RNF 99.1 2.8E-11 9.6E-16 94.5 1.7 55 5-61 4-65 (133)
103 1ibr_B P95, importin beta-1 su 99.1 2.2E-09 7.6E-14 101.4 15.1 267 90-367 131-437 (462)
104 1b3u_A Protein (protein phosph 99.0 4E-09 1.4E-13 102.8 14.8 256 91-367 328-587 (588)
105 4ic3_A E3 ubiquitin-protein li 99.0 3.8E-11 1.3E-15 83.1 0.0 44 6-54 22-66 (74)
106 1b3u_A Protein (protein phosph 99.0 1.2E-08 4.2E-13 99.4 17.3 247 101-364 99-350 (588)
107 3m62_A Ubiquitin conjugation f 99.0 2.3E-10 7.9E-15 113.4 4.5 72 3-76 886-958 (968)
108 4gmo_A Putative uncharacterize 99.0 2.1E-09 7.2E-14 106.9 11.4 187 133-324 36-257 (684)
109 2y1n_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 102.0 3.7 48 7-54 331-378 (389)
110 2vgl_B AP-2 complex subunit be 98.9 1.3E-08 4.6E-13 99.5 15.1 253 89-367 51-311 (591)
111 2vgl_B AP-2 complex subunit be 98.9 7.1E-08 2.4E-12 94.4 19.5 257 90-365 124-417 (591)
112 2ecl_A Ring-box protein 2; RNF 98.9 4.2E-10 1.4E-14 79.3 2.6 47 7-54 14-75 (81)
113 2ecg_A Baculoviral IAP repeat- 98.9 3.9E-10 1.3E-14 78.3 0.8 44 6-54 23-67 (75)
114 2vje_A E3 ubiquitin-protein li 98.8 1.4E-09 4.9E-14 72.7 3.0 48 6-54 6-56 (64)
115 4ap4_A E3 ubiquitin ligase RNF 98.8 5.5E-10 1.9E-14 87.1 0.5 54 6-61 70-130 (133)
116 3dpl_R Ring-box protein 1; ubi 98.8 2.7E-09 9.1E-14 78.8 3.5 47 7-54 36-100 (106)
117 2vje_B MDM4 protein; proto-onc 98.8 2.5E-09 8.5E-14 71.3 2.5 47 7-54 6-55 (63)
118 1w63_A Adapter-related protein 98.8 7.7E-07 2.6E-11 87.4 20.9 252 89-368 72-380 (618)
119 1wim_A KIAA0161 protein; ring 98.7 3.7E-09 1.3E-13 76.8 1.8 47 6-52 3-61 (94)
120 1qgr_A Protein (importin beta 98.7 3E-07 1E-11 93.9 16.1 267 92-367 177-479 (876)
121 2yho_A E3 ubiquitin-protein li 98.7 1.8E-09 6E-14 75.5 -0.5 44 6-54 16-60 (79)
122 2bpt_A Importin beta-1 subunit 98.7 3.9E-07 1.3E-11 92.9 16.5 258 101-366 381-667 (861)
123 1qgr_A Protein (importin beta 98.7 1E-06 3.5E-11 90.0 19.4 268 90-368 131-438 (876)
124 2d8s_A Cellular modulator of i 98.6 3E-08 1E-12 69.1 3.7 50 5-54 12-69 (80)
125 2ea5_A Cell growth regulator w 98.6 4.4E-08 1.5E-12 66.1 3.9 44 6-54 13-57 (68)
126 4a0k_B E3 ubiquitin-protein li 98.5 1.1E-08 3.8E-13 76.5 0.3 46 8-54 48-111 (117)
127 1w63_A Adapter-related protein 98.5 2.1E-06 7E-11 84.4 15.7 244 90-366 145-413 (618)
128 1ibr_B P95, importin beta-1 su 98.5 1.1E-06 3.8E-11 82.8 12.7 252 101-367 13-288 (462)
129 3b2a_A TON_1937, putative unch 98.5 3.6E-06 1.2E-10 69.7 13.3 144 91-249 37-182 (265)
130 1u6g_C TIP120 protein, CAND1; 98.4 3.7E-07 1.3E-11 97.0 8.8 262 91-367 10-284 (1230)
131 2bpt_A Importin beta-1 subunit 98.4 6.6E-06 2.3E-10 83.8 17.4 271 91-367 502-811 (861)
132 2qk2_A LP04448P; mini spindles 98.4 4.2E-06 1.4E-10 71.9 12.1 178 177-366 18-204 (242)
133 1u6g_C TIP120 protein, CAND1; 98.3 3.2E-06 1.1E-10 89.7 13.4 224 90-328 51-287 (1230)
134 3b2a_A TON_1937, putative unch 98.3 7.6E-06 2.6E-10 67.8 12.5 181 173-368 32-219 (265)
135 1ho8_A Vacuolar ATP synthase s 98.3 0.0001 3.5E-09 68.2 21.3 217 147-365 182-474 (480)
136 1te4_A Conserved protein MTH18 98.3 2.2E-07 7.5E-12 71.9 2.9 118 89-244 14-131 (131)
137 3dad_A FH1/FH2 domain-containi 98.2 4.4E-05 1.5E-09 67.2 15.4 147 218-365 120-284 (339)
138 2qk2_A LP04448P; mini spindles 98.2 1.5E-05 5.2E-10 68.4 12.6 177 135-326 19-206 (242)
139 2db0_A 253AA long hypothetical 98.2 0.00021 7.2E-09 56.9 17.0 210 130-365 31-244 (253)
140 2vgl_A Adaptor protein complex 98.1 0.00023 7.8E-09 69.8 19.8 249 90-365 149-431 (621)
141 2vgl_A Adaptor protein complex 98.1 0.00083 2.8E-08 65.8 23.6 241 101-366 123-397 (621)
142 2ct0_A Non-SMC element 1 homol 98.1 3E-06 1E-10 57.6 3.9 48 7-54 14-63 (74)
143 3dad_A FH1/FH2 domain-containi 98.1 3.6E-05 1.2E-09 67.8 11.7 150 90-243 121-283 (339)
144 1te4_A Conserved protein MTH18 98.0 1.8E-06 6.2E-11 66.7 2.6 115 130-279 11-129 (131)
145 3vk6_A E3 ubiquitin-protein li 98.0 2.7E-06 9.1E-11 60.1 2.7 45 10-54 3-48 (101)
146 2qk1_A Protein STU2; STU2P, XM 98.0 3.4E-05 1.2E-09 66.5 10.1 185 91-283 20-220 (249)
147 2qk1_A Protein STU2; STU2P, XM 97.9 9E-05 3.1E-09 63.8 11.9 184 179-366 21-219 (249)
148 4ady_A RPN2, 26S proteasome re 97.9 0.00088 3E-08 67.4 19.6 218 103-366 451-675 (963)
149 2iw3_A Elongation factor 3A; a 97.9 0.00073 2.5E-08 68.7 19.0 245 107-367 70-324 (986)
150 1vyx_A ORF K3, K3RING; zinc-bi 97.8 1.1E-05 3.8E-10 52.5 3.1 49 6-54 4-58 (60)
151 2db0_A 253AA long hypothetical 97.6 0.0069 2.4E-07 48.4 16.6 207 91-325 36-246 (253)
152 3tjz_B Coatomer subunit gamma; 97.5 0.00088 3E-08 60.3 11.7 238 92-365 73-314 (355)
153 3oc3_A Helicase MOT1, MOT1; re 97.5 0.00092 3.1E-08 62.6 11.6 233 91-363 178-432 (800)
154 3k1l_B Fancl; UBC, ring, RWD, 97.4 1.3E-05 4.4E-10 70.2 -1.3 48 7-54 307-372 (381)
155 4ady_A RPN2, 26S proteasome re 97.2 0.076 2.6E-06 53.7 22.4 200 133-365 509-717 (963)
156 1ho8_A Vacuolar ATP synthase s 97.1 0.14 4.9E-06 47.4 22.2 230 129-367 75-350 (480)
157 2fv2_A RCD1 required for cell 97.1 0.023 7.9E-07 47.9 14.7 169 192-365 74-266 (268)
158 1wa5_C Importin alpha RE-expor 97.0 0.033 1.1E-06 57.4 19.2 251 103-365 375-668 (960)
159 3tjz_B Coatomer subunit gamma; 96.7 0.15 5.1E-06 45.8 18.2 238 96-367 34-279 (355)
160 2iw3_A Elongation factor 3A; a 96.7 0.066 2.3E-06 54.6 17.2 215 90-323 98-322 (986)
161 2jun_A Midline-1; B-BOX, TRIM, 96.7 0.0006 2.1E-08 49.6 1.8 34 7-40 2-38 (101)
162 2fv2_A RCD1 required for cell 96.6 0.01 3.4E-07 50.0 9.1 148 107-255 74-233 (268)
163 3ebb_A Phospholipase A2-activa 96.3 0.1 3.5E-06 45.8 14.2 143 220-364 151-303 (304)
164 3nw0_A Non-structural maintena 96.1 0.003 1E-07 53.5 3.0 47 8-54 180-228 (238)
165 3ebb_A Phospholipase A2-activa 95.4 0.11 3.8E-06 45.6 10.5 151 105-256 118-273 (304)
166 3eg5_B Protein diaphanous homo 95.3 0.28 9.5E-06 44.7 13.1 177 86-265 65-272 (383)
167 3i2d_A E3 SUMO-protein ligase 95.1 0.014 4.8E-07 52.0 3.8 64 8-72 249-316 (371)
168 3c2g_A SYS-1 protein; beta-cat 95.1 0.32 1.1E-05 42.9 12.0 116 150-267 260-376 (619)
169 2x1g_F Cadmus; transport prote 95.0 1.7 5.9E-05 44.6 19.8 207 145-365 476-720 (971)
170 1upk_A MO25 protein; transfera 94.9 1.7 5.9E-05 38.2 16.4 197 169-369 73-285 (341)
171 1weo_A Cellulose synthase, cat 94.7 0.032 1.1E-06 38.1 3.8 46 9-54 17-69 (93)
172 2x19_B Importin-13; nuclear tr 94.7 1.8 6.1E-05 44.4 18.8 207 145-365 461-712 (963)
173 2f31_A Diaphanous protein homo 94.6 0.51 1.7E-05 39.7 12.0 114 91-206 4-128 (233)
174 4fo9_A E3 SUMO-protein ligase 94.5 0.024 8.3E-07 50.4 3.7 63 8-71 215-281 (360)
175 1upk_A MO25 protein; transfera 94.2 0.36 1.2E-05 42.5 10.4 183 90-285 124-313 (341)
176 3c2g_A SYS-1 protein; beta-cat 94.2 1.1 3.8E-05 39.6 13.1 133 106-243 260-400 (619)
177 4ffb_C Protein STU2; tubulin f 93.6 0.46 1.6E-05 41.0 10.1 181 92-284 14-213 (278)
178 3oc3_A Helicase MOT1, MOT1; re 93.6 0.22 7.5E-06 47.1 8.1 183 103-320 242-431 (800)
179 2f31_A Diaphanous protein homo 93.4 1.1 3.8E-05 37.5 11.8 161 173-359 42-220 (233)
180 3eg5_B Protein diaphanous homo 93.3 1.9 6.6E-05 39.1 14.0 163 167-356 103-283 (383)
181 1wa5_C Importin alpha RE-expor 92.9 3.1 0.00011 42.7 16.5 173 102-282 471-669 (960)
182 2of3_A ZYG-9; multifunctional 92.5 0.91 3.1E-05 38.8 10.0 175 90-283 49-236 (266)
183 1lrv_A LRV, leucine-rich repea 92.3 0.014 4.9E-07 49.6 -1.5 45 299-362 197-241 (244)
184 4ffb_C Protein STU2; tubulin f 92.0 1.8 6.1E-05 37.2 11.6 181 179-367 14-212 (278)
185 2bnx_A Diaphanous protein homo 91.1 3.8 0.00013 37.2 13.1 144 188-357 72-222 (386)
186 2bnx_A Diaphanous protein homo 90.7 4 0.00014 37.0 12.8 175 89-267 6-211 (386)
187 3u0r_A Apoptosis inhibitor 5; 90.4 3.9 0.00013 37.9 12.2 75 184-270 38-112 (507)
188 4hat_C Exportin-1; heat repeat 89.5 4.7 0.00016 41.7 13.7 135 145-284 465-619 (1023)
189 2cs3_A Protein C14ORF4, MY039 89.2 0.27 9.1E-06 32.8 2.7 36 6-41 13-52 (93)
190 3u0r_A Apoptosis inhibitor 5; 89.1 11 0.00037 35.0 14.1 97 94-203 33-129 (507)
191 2of3_A ZYG-9; multifunctional 89.0 7.9 0.00027 33.0 12.6 168 179-365 51-234 (266)
192 3a6p_A Exportin-5; exportin-5, 89.0 7.9 0.00027 40.9 15.2 129 97-246 21-162 (1204)
193 3ibv_A Exportin-T; karyopherin 88.6 5.1 0.00017 41.2 13.2 206 148-367 458-730 (980)
194 2x1g_F Cadmus; transport prote 88.6 12 0.00041 38.3 16.1 132 186-326 476-616 (971)
195 2x19_B Importin-13; nuclear tr 87.8 13 0.00045 37.9 15.8 170 186-364 461-643 (963)
196 4hat_C Exportin-1; heat repeat 87.0 22 0.00074 36.8 16.7 141 101-248 465-620 (1023)
197 3mjh_B Early endosome antigen 85.7 0.12 4.3E-06 28.6 -0.4 17 6-22 3-19 (34)
198 3ibv_A Exportin-T; karyopherin 85.3 35 0.0012 35.0 17.2 206 98-326 17-261 (980)
199 1x5b_A Signal transducing adap 85.2 2.8 9.6E-05 32.9 7.1 69 297-365 53-123 (163)
200 3l9t_A Putative uncharacterize 84.5 5.7 0.0002 33.1 8.9 141 92-257 75-219 (240)
201 1mhq_A ADP-ribosylation factor 83.8 3.3 0.00011 31.9 6.8 70 297-366 39-115 (148)
202 1vdy_A Hypothetical protein (R 83.6 5 0.00017 30.5 7.6 74 297-370 50-133 (140)
203 3ldz_A STAM-1, signal transduc 82.8 3.2 0.00011 31.6 6.3 69 297-365 43-112 (140)
204 3m1i_C Exportin-1; heat repeat 82.6 25 0.00085 36.4 15.0 199 145-366 28-262 (1049)
205 1juq_A ADP-ribosylation factor 82.3 3.2 0.00011 32.8 6.3 70 297-366 51-127 (171)
206 2ko5_A Ring finger protein Z; 80.3 0.46 1.6E-05 32.9 0.6 44 8-54 28-72 (99)
207 1wil_A KIAA1045 protein; ring 78.9 1.8 6.1E-05 29.3 3.1 36 3-38 10-47 (89)
208 3qml_C Protein SLS1, nucleotid 78.8 16 0.00053 31.7 9.8 149 90-245 25-188 (315)
209 3g2s_A C-terminal fragment of 78.1 6.7 0.00023 30.2 6.7 70 297-366 49-125 (149)
210 1lsh_A Lipovitellin (LV-1N, LV 76.6 8.1 0.00028 40.1 8.9 130 175-326 357-508 (1056)
211 3zyq_A Hepatocyte growth facto 71.9 9.8 0.00034 31.5 6.8 70 297-366 46-117 (226)
212 1lsh_A Lipovitellin (LV-1N, LV 71.7 41 0.0014 34.9 12.7 128 92-249 445-579 (1056)
213 3gjx_A Exportin-1; transport, 71.4 1E+02 0.0034 32.0 18.1 212 133-366 30-274 (1073)
214 2jvx_A NF-kappa-B essential mo 71.1 1.2 4.1E-05 23.4 0.6 17 7-23 2-18 (28)
215 3m1i_C Exportin-1; heat repeat 71.0 99 0.0034 31.8 20.3 180 92-284 53-264 (1049)
216 1dvp_A HRS, hepatocyte growth 70.7 11 0.00037 31.1 6.8 70 297-366 43-114 (220)
217 2jne_A Hypothetical protein YF 70.2 0.062 2.1E-06 37.4 -5.8 40 9-54 33-72 (101)
218 3a6p_A Exportin-5; exportin-5, 70.0 71 0.0024 33.6 14.3 119 145-283 25-162 (1204)
219 3gs3_A Symplekin, LD45768P; he 68.0 54 0.0018 27.6 11.9 143 90-244 15-171 (257)
220 3qml_C Protein SLS1, nucleotid 67.8 60 0.0021 28.1 11.9 105 94-202 75-188 (315)
221 3l9t_A Putative uncharacterize 67.8 52 0.0018 27.3 10.3 139 177-337 74-219 (240)
222 1x5b_A Signal transducing adap 66.9 17 0.00058 28.3 6.8 70 175-245 53-124 (163)
223 1lrv_A LRV, leucine-rich repea 66.8 2.1 7.2E-05 36.1 1.6 85 92-197 103-193 (244)
224 1elk_A Target of MYB1; superhe 65.5 19 0.00065 27.8 6.8 69 297-365 54-128 (157)
225 1m3v_A FLIN4, fusion of the LI 65.4 2.9 0.0001 30.9 2.0 45 9-54 33-80 (122)
226 2o35_A Hypothetical protein DU 63.0 2.7 9.3E-05 29.3 1.2 12 30-41 43-54 (105)
227 3zyq_A Hepatocyte growth facto 62.9 16 0.00056 30.2 6.3 71 174-245 45-117 (226)
228 3fyb_A Protein of unknown func 62.7 2.8 9.6E-05 29.2 1.2 12 30-41 42-53 (104)
229 3ldz_A STAM-1, signal transduc 62.6 7 0.00024 29.7 3.7 90 132-227 43-134 (140)
230 1mhq_A ADP-ribosylation factor 60.5 16 0.00056 27.9 5.5 69 91-161 42-115 (148)
231 2jrp_A Putative cytoplasmic pr 60.5 0.23 7.9E-06 33.7 -4.4 40 9-54 3-42 (81)
232 2xqn_T Testin, TESS; metal-bin 59.2 3.6 0.00012 30.4 1.5 44 8-54 30-74 (126)
233 1dvp_A HRS, hepatocyte growth 58.0 25 0.00085 28.8 6.6 71 174-245 42-114 (220)
234 1juq_A ADP-ribosylation factor 56.2 31 0.001 27.1 6.5 70 175-245 51-127 (171)
235 3gae_A Protein DOA1; UFD3, CDC 56.0 8.7 0.0003 32.5 3.5 102 144-249 101-220 (253)
236 3g2s_A C-terminal fragment of 55.6 36 0.0012 26.0 6.7 70 175-245 49-125 (149)
237 3pst_A Protein DOA1; protein d 54.8 27 0.00092 31.8 6.7 100 145-248 274-391 (425)
238 2lri_C Autoimmune regulator; Z 52.1 8.6 0.00029 24.9 2.2 46 6-53 10-60 (66)
239 3uk3_C Zinc finger protein 217 50.4 9.1 0.00031 23.0 2.1 41 7-54 3-43 (57)
240 3l3f_X Protein DOA1, DOA1/UFD3 50.2 26 0.00087 31.3 5.7 101 144-248 210-328 (362)
241 6rxn_A Rubredoxin; electron tr 49.7 5.2 0.00018 23.8 0.8 13 4-16 26-38 (46)
242 3o2t_A Symplekin; heat repeat, 47.3 87 0.003 28.1 8.7 140 90-243 25-180 (386)
243 1e8j_A Rubredoxin; iron-sulfur 47.2 8.2 0.00028 23.6 1.4 13 4-16 32-44 (52)
244 4gzn_C ZFP-57, zinc finger pro 47.1 11 0.00036 23.7 2.0 37 7-54 3-43 (60)
245 2lv2_A Insulinoma-associated p 46.7 12 0.00041 25.4 2.4 38 6-54 26-67 (85)
246 2eps_A POZ-, at HOOK-, and zin 46.1 28 0.00094 20.6 3.9 38 6-54 10-52 (54)
247 2xjy_A Rhombotin-2; oncoprotei 46.0 8.2 0.00028 28.6 1.6 47 7-54 28-77 (131)
248 3gae_A Protein DOA1; UFD3, CDC 46.0 1.3E+02 0.0045 25.1 10.3 99 230-331 103-223 (253)
249 1vfy_A Phosphatidylinositol-3- 45.8 5.9 0.0002 26.2 0.7 33 4-36 7-43 (73)
250 2rgt_A Fusion of LIM/homeobox 45.4 13 0.00043 29.1 2.7 45 7-54 32-76 (169)
251 1rut_X Flinc4, fusion protein 45.4 3.6 0.00012 33.0 -0.6 47 7-54 31-80 (188)
252 1x61_A Thyroid receptor intera 45.0 18 0.0006 23.4 3.0 32 9-40 34-66 (72)
253 3vhs_A ATPase wrnip1; zinc fin 44.7 4.7 0.00016 20.3 0.0 12 8-19 6-17 (29)
254 4rxn_A Rubredoxin; electron tr 43.3 7.3 0.00025 24.1 0.8 13 4-16 32-44 (54)
255 2jtn_A LIM domain-binding prot 43.0 9.6 0.00033 30.3 1.7 45 7-54 86-130 (182)
256 2epq_A POZ-, at HOOK-, and zin 42.6 33 0.0011 19.0 3.8 15 7-21 9-23 (45)
257 1bbo_A Human enhancer-binding 40.6 14 0.00047 22.1 1.8 35 9-54 2-40 (57)
258 2ytm_A Zinc finger protein 28 40.5 46 0.0016 18.6 4.2 15 7-21 11-25 (46)
259 3gs3_A Symplekin, LD45768P; he 39.5 1.2E+02 0.004 25.5 7.9 87 148-243 30-116 (257)
260 2kn9_A Rubredoxin; metalloprot 39.4 12 0.0004 25.3 1.4 14 4-17 56-69 (81)
261 2epr_A POZ-, at HOOK-, and zin 39.4 38 0.0013 19.2 3.7 36 5-51 9-48 (48)
262 1x6e_A Zinc finger protein 24; 39.4 16 0.00055 23.3 2.1 38 6-54 12-53 (72)
263 2lbm_A Transcriptional regulat 39.1 18 0.0006 27.5 2.4 42 8-51 63-116 (142)
264 2adr_A ADR1; transcription reg 38.8 17 0.00057 22.0 2.0 36 8-54 2-41 (60)
265 1yk4_A Rubredoxin, RD; electro 38.8 9.5 0.00033 23.3 0.8 13 4-16 31-43 (52)
266 3vld_A DNA mismatch repair pro 38.5 2E+02 0.0068 26.7 9.7 116 133-257 75-196 (500)
267 2lce_A B-cell lymphoma 6 prote 38.4 28 0.00094 22.2 3.2 38 6-54 15-56 (74)
268 3ttc_A HYPF, transcriptional r 38.2 8.7 0.0003 37.3 0.8 49 5-53 14-99 (657)
269 4g9i_A Hydrogenase maturation 38.0 8.8 0.0003 38.2 0.8 70 5-74 103-212 (772)
270 2ct7_A Ring finger protein 31; 37.8 2.2 7.5E-05 29.4 -2.6 29 10-38 27-61 (86)
271 2v3b_B Rubredoxin 2, rubredoxi 37.7 9.9 0.00034 23.6 0.7 12 5-16 33-44 (55)
272 2eq4_A Zinc finger protein 224 37.6 53 0.0018 18.2 4.1 15 7-21 11-25 (46)
273 2jmo_A Parkin; IBR, E3 ligase, 37.6 1.9 6.5E-05 29.3 -2.9 32 8-39 25-69 (80)
274 1iml_A CRIP, cysteine rich int 36.8 11 0.00039 24.7 1.0 45 7-54 26-72 (76)
275 3pst_A Protein DOA1; protein d 36.7 2.4E+02 0.0084 25.6 10.1 101 230-333 275-397 (425)
276 2ytt_A Zinc finger protein 473 36.6 49 0.0017 18.4 3.8 15 7-21 11-25 (46)
277 2eov_A Zinc finger protein 484 36.3 56 0.0019 18.1 4.1 15 7-21 11-25 (46)
278 2cup_A Skeletal muscle LIM-pro 35.9 6.3 0.00021 27.7 -0.5 44 8-54 33-77 (101)
279 2fiy_A Protein FDHE homolog; F 35.8 1.8 6E-05 37.9 -4.1 45 7-52 181-231 (309)
280 2ctd_A Zinc finger protein 512 35.6 39 0.0013 23.2 3.8 39 8-54 34-73 (96)
281 2ee8_A Protein ODD-skipped-rel 35.3 61 0.0021 22.1 4.9 17 5-21 14-30 (106)
282 2epz_A Zinc finger protein 28 35.2 57 0.002 18.0 4.0 15 7-21 11-25 (46)
283 2gqj_A Zinc finger protein KIA 33.9 28 0.00094 23.9 2.7 41 7-54 23-65 (98)
284 2ytn_A Zinc finger protein 347 33.7 58 0.002 18.0 3.9 15 7-21 11-25 (46)
285 2ytr_A Zinc finger protein 347 33.5 63 0.0021 17.8 4.0 15 7-21 11-25 (46)
286 2ytq_A Zinc finger protein 268 33.5 64 0.0022 17.9 4.2 15 7-21 11-25 (46)
287 1dx8_A Rubredoxin; electron tr 33.3 13 0.00044 24.4 0.8 14 4-17 36-49 (70)
288 2em8_A Zinc finger protein 224 32.8 49 0.0017 18.4 3.4 15 7-21 11-25 (46)
289 2elz_A Zinc finger protein 224 32.7 65 0.0022 17.8 3.9 15 7-21 11-25 (46)
290 2eop_A Zinc finger protein 268 32.6 65 0.0022 17.7 4.1 15 7-21 11-25 (46)
291 2eml_A Zinc finger protein 28 32.6 53 0.0018 18.2 3.5 15 7-21 11-25 (46)
292 3vth_A Hydrogenase maturation 32.5 10 0.00036 37.5 0.3 70 5-75 108-215 (761)
293 2emp_A Zinc finger protein 347 32.5 50 0.0017 18.3 3.4 15 7-21 11-25 (46)
294 1wig_A KIAA1808 protein; LIM d 32.4 11 0.00038 24.7 0.3 21 10-30 7-27 (73)
295 2xpp_A IWS1, ECU08_0440; trans 32.1 1.6E+02 0.0056 22.2 8.7 92 106-202 37-135 (145)
296 2ctu_A Zinc finger protein 483 32.1 7.8 0.00027 24.7 -0.5 34 7-54 17-50 (73)
297 2eoe_A Zinc finger protein 347 32.0 58 0.002 18.0 3.6 15 7-21 11-25 (46)
298 2cur_A Skeletal muscle LIM-pro 31.6 25 0.00087 22.3 2.1 32 8-39 31-63 (69)
299 2k16_A Transcription initiatio 31.6 10 0.00034 25.1 0.0 48 7-54 17-70 (75)
300 2cot_A Zinc finger protein 435 31.4 33 0.0011 22.0 2.7 38 6-54 16-57 (77)
301 2eoq_A Zinc finger protein 224 31.4 69 0.0024 17.7 4.1 15 7-21 11-25 (46)
302 2d8x_A Protein pinch; LIM doma 31.4 24 0.00081 22.6 1.9 31 9-39 32-63 (70)
303 3l3f_X Protein DOA1, DOA1/UFD3 31.3 1.9E+02 0.0067 25.6 8.3 101 230-333 212-334 (362)
304 1x5w_A Zinc finger protein 64, 31.3 25 0.00086 22.1 2.0 38 6-54 7-48 (70)
305 2ep2_A Zinc finger protein 484 31.3 56 0.0019 18.1 3.5 15 7-21 11-25 (46)
306 2emh_A Zinc finger protein 484 31.2 47 0.0016 18.4 3.1 15 7-21 11-25 (46)
307 2d8z_A Four and A half LIM dom 30.9 21 0.00071 22.8 1.5 31 9-39 32-63 (70)
308 2em5_A ZFP-95, zinc finger pro 30.9 54 0.0018 18.2 3.3 15 7-21 11-25 (46)
309 2kkx_A Uncharacterized protein 30.5 46 0.0016 23.3 3.2 49 5-54 24-78 (102)
310 3vld_A DNA mismatch repair pro 30.4 3.3E+02 0.011 25.2 10.2 115 102-229 92-209 (500)
311 2emk_A Zinc finger protein 28 30.3 73 0.0025 17.6 4.3 15 7-21 11-25 (46)
312 1llm_C Chimera of ZIF23-GCN4; 30.2 25 0.00084 23.4 1.9 41 7-54 2-42 (88)
313 1weu_A Inhibitor of growth fam 30.1 18 0.00063 25.0 1.2 46 5-54 33-87 (91)
314 2eme_A Zinc finger protein 473 29.7 63 0.0021 17.8 3.5 15 7-21 11-25 (46)
315 1joc_A EEA1, early endosomal a 29.6 10 0.00034 28.2 -0.3 29 9-37 70-102 (125)
316 2gmg_A Hypothetical protein PF 29.6 7.6 0.00026 27.6 -0.9 30 19-54 66-95 (105)
317 2wbt_A B-129; zinc finger; 2.7 29.6 42 0.0014 24.2 3.3 13 42-54 99-111 (129)
318 2yt9_A Zinc finger-containing 29.2 30 0.001 23.2 2.3 17 5-21 4-20 (95)
319 1elk_A Target of MYB1; superhe 29.0 1.5E+02 0.0051 22.6 6.4 70 175-245 54-129 (157)
320 2dlq_A GLI-kruppel family memb 28.8 58 0.002 22.9 4.0 16 6-21 5-20 (124)
321 2ytd_A Zinc finger protein 473 28.6 64 0.0022 17.8 3.4 15 7-21 11-25 (46)
322 2ene_A Zinc finger protein 347 28.6 62 0.0021 17.9 3.3 15 7-21 11-25 (46)
323 3gjx_A Exportin-1; transport, 28.5 1E+02 0.0034 32.0 6.8 105 146-255 492-602 (1073)
324 2el6_A Zinc finger protein 268 28.5 70 0.0024 17.7 3.6 15 7-21 11-25 (46)
325 2emm_A ZFP-95, zinc finger pro 28.3 65 0.0022 17.7 3.4 15 7-21 11-25 (46)
326 2emy_A Zinc finger protein 268 28.2 50 0.0017 18.3 2.8 15 7-21 11-25 (46)
327 2eoo_A ZFP-95, zinc finger pro 28.1 61 0.0021 17.9 3.3 15 7-21 11-25 (46)
328 2d9h_A Zinc finger protein 692 28.1 33 0.0011 22.1 2.2 42 6-54 5-49 (78)
329 1nyp_A Pinch protein; LIM doma 27.9 17 0.00058 23.0 0.7 28 9-36 32-60 (66)
330 2ysp_A Zinc finger protein 224 27.9 56 0.0019 18.1 3.0 15 7-21 11-25 (46)
331 2ema_A Zinc finger protein 347 27.8 65 0.0022 17.8 3.3 15 7-21 11-25 (46)
332 2el4_A Zinc finger protein 268 27.5 61 0.0021 17.9 3.2 15 7-21 11-25 (46)
333 3v43_A Histone acetyltransfera 27.4 55 0.0019 23.4 3.5 45 6-50 3-62 (112)
334 2em7_A Zinc finger protein 224 27.3 61 0.0021 17.9 3.1 15 7-21 11-25 (46)
335 1wyh_A SLIM 2, skeletal muscle 27.2 22 0.00074 22.9 1.1 29 9-37 34-63 (72)
336 2ct1_A Transcriptional repress 27.1 28 0.00097 22.4 1.7 37 7-54 14-56 (77)
337 1x6a_A LIMK-2, LIM domain kina 26.9 34 0.0012 22.6 2.1 31 9-39 42-75 (81)
338 3rru_A TOM1L1 protein; structu 26.7 1.1E+02 0.0036 23.4 5.1 71 297-367 54-130 (152)
339 2e72_A POGO transposable eleme 26.7 18 0.0006 21.5 0.5 14 41-54 10-23 (49)
340 2pv0_B DNA (cytosine-5)-methyl 26.7 33 0.0011 30.8 2.5 64 8-73 93-168 (386)
341 2epx_A Zinc finger protein 28 26.7 86 0.0029 17.2 4.0 15 7-21 11-25 (47)
342 2ytk_A Zinc finger protein 347 26.7 72 0.0025 17.6 3.4 15 7-21 11-25 (46)
343 2epw_A Zinc finger protein 268 26.6 76 0.0026 17.4 3.5 15 7-21 11-25 (46)
344 2l43_A N-teminal domain from h 26.5 4.5 0.00016 27.9 -2.5 50 5-54 22-77 (88)
345 2eq0_A Zinc finger protein 347 26.4 69 0.0024 17.7 3.3 15 7-21 11-25 (46)
346 2yu8_A Zinc finger protein 347 26.4 64 0.0022 17.8 3.1 15 7-21 11-25 (46)
347 1y02_A CARP2, FYVE-ring finger 26.4 11 0.00038 27.7 -0.5 33 7-39 18-54 (120)
348 2ep0_A Zinc finger protein 28 26.3 75 0.0026 17.5 3.4 15 7-21 11-25 (46)
349 3lqh_A Histone-lysine N-methyl 26.2 18 0.00062 28.8 0.7 46 9-54 3-65 (183)
350 2emx_A Zinc finger protein 268 26.1 57 0.002 17.8 2.8 15 7-21 9-23 (44)
351 1x64_A Alpha-actinin-2 associa 26.1 20 0.00067 24.4 0.8 37 9-54 26-62 (89)
352 2dar_A PDZ and LIM domain prot 25.9 34 0.0012 23.2 2.0 23 10-32 27-49 (90)
353 1f62_A Transcription factor WS 25.7 17 0.00059 21.8 0.4 42 10-51 2-49 (51)
354 2l5u_A Chromodomain-helicase-D 25.7 18 0.00063 22.8 0.5 45 5-51 8-57 (61)
355 1sz9_A PCF11 protein; RNA poly 25.4 2.1E+02 0.0073 21.4 7.7 71 297-367 44-114 (144)
356 2em9_A Zinc finger protein 224 25.3 70 0.0024 17.6 3.1 15 7-21 11-25 (46)
357 1j2o_A FLIN2, fusion of rhombo 25.2 45 0.0015 23.9 2.6 35 7-41 29-66 (114)
358 2enc_A Zinc finger protein 224 24.9 83 0.0028 17.3 3.4 15 7-21 11-25 (46)
359 1wen_A Inhibitor of growth fam 24.4 33 0.0011 22.4 1.6 46 5-54 13-67 (71)
360 2en8_A Zinc finger protein 224 24.2 78 0.0027 17.4 3.2 15 7-21 11-25 (46)
361 1ard_A Yeast transcription fac 24.2 28 0.00097 16.6 1.0 12 9-20 3-14 (29)
362 1p7a_A BF3, BKLF, kruppel-like 24.0 30 0.001 18.1 1.2 15 7-21 10-24 (37)
363 2m0e_A Zinc finger and BTB dom 23.9 35 0.0012 16.1 1.4 10 45-54 4-13 (29)
364 1z60_A TFIIH basal transcripti 23.9 34 0.0012 21.5 1.5 39 10-49 17-58 (59)
365 2emf_A Zinc finger protein 484 23.7 78 0.0027 17.5 3.1 15 7-21 11-25 (46)
366 2ytj_A Zinc finger protein 484 23.7 85 0.0029 17.2 3.3 15 7-21 11-25 (46)
367 2en1_A Zinc finger protein 224 23.6 68 0.0023 17.7 2.8 15 7-21 11-25 (46)
368 2kmk_A Zinc finger protein GFI 23.5 36 0.0012 21.9 1.7 13 9-21 2-14 (82)
369 1znf_A 31ST zinc finger from X 23.3 30 0.001 16.2 1.0 12 9-20 2-13 (27)
370 1x62_A C-terminal LIM domain p 23.0 20 0.0007 23.7 0.3 28 8-35 15-42 (79)
371 2yso_A ZFP-95, zinc finger pro 23.0 86 0.003 17.2 3.2 15 7-21 11-25 (46)
372 1wjp_A Zinc finger protein 295 22.8 74 0.0025 21.8 3.4 15 7-21 15-29 (107)
373 1klr_A Zinc finger Y-chromosom 22.8 39 0.0013 16.1 1.5 12 9-20 3-14 (30)
374 3o2t_A Symplekin; heat repeat, 22.7 2.2E+02 0.0076 25.5 7.1 15 309-323 76-90 (386)
375 2kvh_A Zinc finger and BTB dom 22.7 26 0.00088 16.6 0.6 13 8-20 3-15 (27)
376 2dmd_A Zinc finger protein 64, 22.6 49 0.0017 22.1 2.4 16 6-21 6-21 (96)
377 2en6_A Zinc finger protein 268 22.5 74 0.0025 17.5 2.8 15 7-21 11-25 (46)
378 1a1h_A QGSR zinc finger peptid 22.4 41 0.0014 22.1 1.9 14 8-21 4-19 (90)
379 2l3k_A Rhombotin-2, linker, LI 22.0 30 0.001 25.3 1.1 34 7-40 35-70 (123)
380 1wff_A Riken cDNA 2810002D23 p 22.0 29 0.00099 23.6 0.9 25 8-32 25-51 (85)
381 1paa_A Yeast transcription fac 21.8 41 0.0014 16.2 1.4 12 9-20 3-14 (30)
382 2elr_A Zinc finger protein 406 21.7 38 0.0013 17.4 1.3 15 7-21 8-22 (36)
383 1x3h_A Leupaxin; paxillin fami 21.6 48 0.0016 21.7 2.0 31 9-39 42-73 (80)
384 2cor_A Pinch protein; LIM doma 21.3 32 0.0011 22.7 1.0 36 10-54 17-52 (79)
385 2yw8_A RUN and FYVE domain-con 21.0 21 0.00073 24.0 0.1 29 9-37 20-52 (82)
386 1z2q_A LM5-1; membrane protein 21.0 21 0.00073 24.2 0.1 30 8-37 21-54 (84)
387 2m0d_A Zinc finger and BTB dom 20.9 29 0.00098 16.7 0.6 13 8-20 3-15 (30)
388 1wfh_A Zinc finger (AN1-like) 20.7 51 0.0017 21.0 1.8 26 7-32 14-40 (64)
389 1wep_A PHF8; structural genomi 20.7 95 0.0033 20.5 3.4 47 7-54 11-65 (79)
390 3gox_A Restriction endonucleas 20.6 40 0.0014 26.8 1.6 46 9-54 76-148 (200)
391 1b8t_A Protein (CRP1); LIM dom 20.6 34 0.0012 27.2 1.3 34 7-40 33-67 (192)
392 1rik_A E6APC1 peptide; E6-bind 20.2 32 0.0011 16.4 0.7 13 9-21 3-15 (29)
393 3ql9_A Transcriptional regulat 20.2 50 0.0017 24.5 2.0 41 8-50 57-109 (129)
394 1f2i_G Fusion of N-terminal 17 20.1 51 0.0017 20.7 1.9 37 7-54 18-60 (73)
395 2kvf_A Zinc finger and BTB dom 20.1 32 0.0011 16.3 0.7 13 8-20 3-15 (28)
396 2d8y_A Eplin protein; LIM doma 20.0 39 0.0013 23.0 1.3 29 9-37 43-72 (91)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=7.2e-35 Score=266.42 Aligned_cols=264 Identities=22% Similarity=0.267 Sum_probs=232.4
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc---------CCChhHHHHHHHHHhcCCCCcc-ccccccc
Q 017402 103 LESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH---------SDGFTLQEKALSLLLNLSLDDD-NKVGLVA 172 (372)
Q Consensus 103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---------~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~ 172 (372)
.+.+..|+++|.+++. ++++|+.|++.|+++.|+.+|... ..+++++..|+++|.||+.+++ ++..+..
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445589999999998 578999999999999999999621 1246799999999999998855 7777755
Q ss_pred -cCChHHHHHHHhcCChHHHHHHHHHHHHhccc--ccchhhhccccchHHHHHHHhhc-CCchHHHHHHHHHHHhhcC-C
Q 017402 173 -EGAVSRVVAALRFGSPDCRAIAATIITSLAVV--EVNKATIGDYPYAINALVSLLQN-GKLIREKKEAATALYALTS-F 247 (372)
Q Consensus 173 -~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~~a~~aL~~L~~-~ 247 (372)
.|+|+.|+++|++++.+++..|+++|.+|+.. +++|..|.+ .|+|+.|+++|.. .+. .+++.|+.+|+||+. +
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~-~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKE-STLKSVLSALWNLSAHC 202 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTTC
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCH-HHHHHHHHHHHHHHccC
Confidence 55699999999999999999999999999975 468888888 7999999998654 445 899999999999999 6
Q ss_pred CchhHHHH-hcCchHHHHHHHhhh--------HHHHHHHHHHHhC----CHhHHHHHHhccchHHHHHHHHhcCChhHHH
Q 017402 248 PENRKRVV-SCGAVPILMRLADAG--------LERAVEVLSILVK----CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQ 314 (372)
Q Consensus 248 ~~~~~~i~-~~g~v~~L~~ll~~~--------~e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~ 314 (372)
++++..++ ..|+++.|+++|.++ .+.++.+|+||+. .++++..+.+ .|+++.|+.+|.+++..+++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCChHHHH
Confidence 68888888 789999999999532 5779999999995 8888888888 89999999999999999999
Q ss_pred hHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCCC
Q 017402 315 CSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPS 370 (372)
Q Consensus 315 ~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 370 (372)
.|+++|++++..+++.+..+++.|+++.|+.+++++++++|+.|+++|++|..++.
T Consensus 282 ~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999998889999999999999999999999999999999999999988764
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=6.2e-34 Score=267.69 Aligned_cols=259 Identities=22% Similarity=0.273 Sum_probs=228.7
Q ss_pred HHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc---------CCChhHHHHHHHHHhcCCCCcc-ccccccc-cCCh
Q 017402 108 ESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH---------SDGFTLQEKALSLLLNLSLDDD-NKVGLVA-EGAV 176 (372)
Q Consensus 108 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---------~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~-~g~i 176 (372)
+|+++|.|++. ++++|+.|.+.|+++.|+.+|... ..+++++..|+++|.||+.+++ ++..+.. .|+|
T Consensus 167 qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 167 PAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 89999999987 588999999999999999999521 1346789999999999998865 6666654 5669
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhccc--ccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-CCchhHH
Q 017402 177 SRVVAALRFGSPDCRAIAATIITSLAVV--EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPENRKR 253 (372)
Q Consensus 177 ~~lv~~L~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~~~ 253 (372)
+.|+++|++++.+++..|+++|.+|+.. ++++..|.+ .|+|+.|+++|....+..+++.|+.+|+||+. +++++..
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999999999999999999984 468888888 79999999986543333899999999999999 7789988
Q ss_pred HH-hcCchHHHHHHHhhh--------HHHHHHHHHHHhC----CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHH
Q 017402 254 VV-SCGAVPILMRLADAG--------LERAVEVLSILVK----CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTL 320 (372)
Q Consensus 254 i~-~~g~v~~L~~ll~~~--------~e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L 320 (372)
++ ..|+++.|+.+|.++ .+.++++|+||+. .++.+..+.+ .|+++.|+.+|.+++..+++.|+++|
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHHHHHHHHH
Confidence 88 789999999999432 5779999999994 7888888888 89999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 321 SCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 321 ~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
++++..+++.+..+++.|+++.|+++++++++++++.|+++|++|..+.
T Consensus 404 ~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999888999999999999999999999999999999999999988765
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.3e-32 Score=264.25 Aligned_cols=282 Identities=20% Similarity=0.257 Sum_probs=240.1
Q ss_pred CCCCCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 017402 83 EHANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL 162 (372)
Q Consensus 83 ~~~~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~ 162 (372)
....+..|.++++|.++ +++++.+|++.|.+++..+++++..+++.|+||.|+++|+ +.+.++++.|+++|.||+.
T Consensus 44 ~~~~~~i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~--s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD--HPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG--CSSHHHHHHHHHHHHHHTS
T ss_pred CcccccHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC--CCCHHHHHHHHHHHHHHHc
Confidence 34567789999999876 7899999999999999888899999999999999999999 8899999999999999998
Q ss_pred C--ccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhh-------------
Q 017402 163 D--DDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ------------- 226 (372)
Q Consensus 163 ~--~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~------------- 226 (372)
+ ++++..|++.|+|+.|+.+|++ .+.++++.++++|++||.+++++..|+. ++|+.|+.++.
T Consensus 120 ~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 120 GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC------
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhccccccccccccc
Confidence 4 7899999999999999999997 5789999999999999999999999985 67999999872
Q ss_pred ----cCCchHHHHHHHHHHHhhcCCCc-hhHHHHhc-CchHHHHHHHhhh----------HHHHHHHHHHHhCCHhHH--
Q 017402 227 ----NGKLIREKKEAATALYALTSFPE-NRKRVVSC-GAVPILMRLADAG----------LERAVEVLSILVKCKEGR-- 288 (372)
Q Consensus 227 ----~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~-g~v~~L~~ll~~~----------~e~a~~~L~~L~~~~~~~-- 288 (372)
+..+..++++|+++|+||+.+.+ +|..+++. |+++.|+.++.+. .+.|+++|+||+..-...
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~ 277 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP 277 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccccc
Confidence 11124899999999999999764 68999986 6678999999531 688999999999863211
Q ss_pred ------------------------HHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCC----HHHHHHHHhcCh
Q 017402 289 ------------------------EEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCS----QEICGDSRKEGV 339 (372)
Q Consensus 289 ------------------------~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~g~ 339 (372)
+.+.. .++++.|+.++.. .++.+++.|+++|++||... ...+..+.+.|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~g 356 (584)
T 3l6x_A 278 QAERYQEAAPNVANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA 356 (584)
T ss_dssp TCCC--------------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHH
T ss_pred chhhhhhhcccccccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCc
Confidence 11111 3567888999964 67899999999999999764 244556667899
Q ss_pred hHHHHHHhhcccHHHHHHHHHHHHHHhcCCCC
Q 017402 340 LDICMGLLEDDNEKVRRNANNLIQTLSGNPSM 371 (372)
Q Consensus 340 ~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 371 (372)
++.|+.++.++++++++.|.++|++|..+...
T Consensus 357 lp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~ 388 (584)
T 3l6x_A 357 LSAIADLLTNEHERVVKAASGALRNLAVDARN 388 (584)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH
Confidence 99999999999999999999999999987654
No 4
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=7.3e-33 Score=263.62 Aligned_cols=276 Identities=17% Similarity=0.196 Sum_probs=235.7
Q ss_pred CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402 88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN 166 (372)
Q Consensus 88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~ 166 (372)
..|.++..|.++ +++.+..|++.|++++.+++.++..+++.|+||.|+++|+ +++++++..|+++|.||+.+ +++
T Consensus 3 ~l~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 3 TIPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp CHHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred CHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHH
Confidence 347799999886 7899999999999999878778889999999999999999 78999999999999999987 899
Q ss_pred cccccccCChHHHHHHHh-cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhh--------cCC-------c
Q 017402 167 KVGLVAEGAVSRVVAALR-FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ--------NGK-------L 230 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~--------~~~-------~ 230 (372)
+..|++.|+++.|+++|+ +++.++++.++++|+||+..++++..+.+ |++|.|+.++. +.. +
T Consensus 79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhccccc
Confidence 999999999999999999 78999999999999999999888888876 99999999993 221 2
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHhc-CchHHHHHHHhh-------h---HHHHHHHHHHHhCCHh-------------
Q 017402 231 IREKKEAATALYALTSFPENRKRVVSC-GAVPILMRLADA-------G---LERAVEVLSILVKCKE------------- 286 (372)
Q Consensus 231 ~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~L~~ll~~-------~---~e~a~~~L~~L~~~~~------------- 286 (372)
..+...|+++|+|||.+++++..+++. |+++.|+.+|.+ + .+.++.+|.||+...+
T Consensus 157 ~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 356779999999999998899999998 999999999964 1 6789999999984211
Q ss_pred --------------------------------------HHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCC
Q 017402 287 --------------------------------------GREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCS 327 (372)
Q Consensus 287 --------------------------------------~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~ 327 (372)
+.+.+. +.|+++.|+.+|.. .++.+++.|+++|+++|.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY-HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHh-CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence 111222 26789999999976 46899999999999999764
Q ss_pred HH----H-HHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCCC
Q 017402 328 QE----I-CGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNPS 370 (372)
Q Consensus 328 ~~----~-~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 370 (372)
.. . +..+.+.|+++.|++++.++++++++.|+++|++|+.+.+
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 32 3 3344568999999999999999999999999999987654
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=255.17 Aligned_cols=280 Identities=20% Similarity=0.267 Sum_probs=237.7
Q ss_pred CCchhHHHHhhccC----------CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCH----------HHHHHHHhhcCCC
Q 017402 87 PNPQTLISVLTSKS----------SPLESKLESLTQLTKLSKRDSASRRKLTESGAV----------SAVLNCLKIHSDG 146 (372)
Q Consensus 87 ~~~~~li~~L~~~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i----------~~L~~lL~~~~~~ 146 (372)
.-.|.|+++|.... ++++.+.+|+++|.|++.++++......+.|++ +.+++++.+...+
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 34578999998642 347999999999999999998888888888888 6666677643212
Q ss_pred hh-----HHH-------HHHHHHhcCCCCccccccccccCChHHHHHHHhc-----------CChHHHHHHHHHHHHhcc
Q 017402 147 FT-----LQE-------KALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-----------GSPDCRAIAATIITSLAV 203 (372)
Q Consensus 147 ~~-----~~~-------~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-----------~~~~~~~~a~~~L~~ls~ 203 (372)
.+ +++ .|+++|.|++.++++|..|.+.|++++|+.+|.. .+..++..|+++|.||+.
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~ 229 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence 22 434 9999999999999999999999999999999952 246789999999999998
Q ss_pred ccc-chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC--CchhHHHHhcCchHHHHHHH-hhh----HHHHH
Q 017402 204 VEV-NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF--PENRKRVVSCGAVPILMRLA-DAG----LERAV 275 (372)
Q Consensus 204 ~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~--~~~~~~i~~~g~v~~L~~ll-~~~----~e~a~ 275 (372)
.++ ++..+....|+||.|+.+|+++++ +++..|+++|+||+.. ++++..+++.|+|+.|+++| .++ .+.++
T Consensus 230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~-~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 230 GDVANKATLCSMKGCMRALVAQLKSESE-DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TCHHHHHHHHHCHHHHHHHHHGGGCSCH-HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCcccHHHHHHcCCcHHHHHHHHhCCCH-HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 774 677775435779999999998877 9999999999999984 46889999999999999986 322 67899
Q ss_pred HHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcCCh----hHHHhHHHHHHHHhc---CCHHHHHHHHhcChhHHHHHHh
Q 017402 276 EVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTGSS----RAVQCSLFTLSCLCC---CSQEICGDSRKEGVLDICMGLL 347 (372)
Q Consensus 276 ~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~g~~~~l~~ll 347 (372)
.+|+||+. +++++..+....|+++.|++++.+.++ .+++.|+++|++++. .++++++.+++.|+++.|+.++
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 99999999 888899998558999999999987654 489999999999997 5799999999999999999999
Q ss_pred hcccHHHHHHHHHHHHHHhc
Q 017402 348 EDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 348 ~~~~~~v~~~a~~~L~~l~~ 367 (372)
.+++.++++.|+++|.+|..
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHS
T ss_pred cCCChHHHHHHHHHHHHHHc
Confidence 99999999999999999984
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=1.7e-30 Score=257.55 Aligned_cols=275 Identities=16% Similarity=0.152 Sum_probs=242.4
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcCh-----------------------------HHH---HHHhhcCCHHHHH
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDS-----------------------------ASR---RKLTESGAVSAVL 137 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~---~~i~~~g~i~~L~ 137 (372)
|.|+.+|+++ ++..+..|+++|.|++.+++ .++ +.+++.|++|.|+
T Consensus 424 p~LV~LL~s~--d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV 501 (810)
T 3now_A 424 HALMDLARGG--NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501 (810)
T ss_dssp HHHHHHHHTT--CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHhCCC--ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence 6799999864 78899999999999998542 223 6788999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhcc--cc
Q 017402 138 NCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGD--YP 215 (372)
Q Consensus 138 ~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~--~~ 215 (372)
.+|+ ++++.+++.|+++|.|++.+++++..+++.|++++|+.+|++++...++.|+++|.+|+...+....+.. ..
T Consensus 502 ~LL~--s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~ 579 (810)
T 3now_A 502 ALAK--TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSL 579 (810)
T ss_dssp HHHT--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHH
T ss_pred HHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhh
Confidence 9999 8899999999999999999988999999999999999999999999999999999999876544433321 14
Q ss_pred chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHH
Q 017402 216 YAINALVSLLQNGKLIREKKEAATALYALTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREE 290 (372)
Q Consensus 216 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~ 290 (372)
|++++|+.+|.++.+...+..|+++|.||+..+ +++..++++|+++.|+.++.++ ++.|+.+|+||+.+++.+..
T Consensus 580 ~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~ 659 (810)
T 3now_A 580 DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659 (810)
T ss_dssp HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH
T ss_pred cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence 799999999986644244568999999999975 6889999999999999999654 78899999999999999999
Q ss_pred HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHh-cChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 291 MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRK-EGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 291 i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
+....|+++.|+.++...+..+++.|+++|++++.++++..+.+++ .|+++.|+.++.++++++|+.|.++|.++..+
T Consensus 660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 8864789999999999999999999999999999977888899998 89999999999999999999999999998764
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=2.9e-30 Score=245.68 Aligned_cols=278 Identities=17% Similarity=0.199 Sum_probs=236.7
Q ss_pred CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402 88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK 167 (372)
Q Consensus 88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~ 167 (372)
..|.|+.+|.++ +++++..|+++|.+++.++++++..+++.|+||.|+++|.. ++++++++.++++|.||+.+++++
T Consensus 45 ~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~~~~~ 121 (457)
T 1xm9_A 45 GICKLVDLLRSP--NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSSTDELK 121 (457)
T ss_dssp HHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh-CCCHHHHHHHHHHHHHHhcCHHhH
Confidence 357899999865 88999999999999999778999999999999999999984 357899999999999999999999
Q ss_pred ccccccCChHHHHHHHh--------cC--------ChHHHHHHHHHHHHhcccccchhhhcccc-chHHHHHHHhhcC--
Q 017402 168 VGLVAEGAVSRVVAALR--------FG--------SPDCRAIAATIITSLAVVEVNKATIGDYP-YAINALVSLLQNG-- 228 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~--------~~--------~~~~~~~a~~~L~~ls~~~~~~~~i~~~~-g~i~~Lv~ll~~~-- 228 (372)
..+++ |+++.|+++|. ++ +.++...|+++|.||+..++++..+.+ . |+++.|+.++++.
T Consensus 122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~ 199 (457)
T 1xm9_A 122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN-YSGLIDSLMAYVQNCVA 199 (457)
T ss_dssp HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT-STTHHHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH-cCCCHHHHHHHHHhhcc
Confidence 98999 99999999993 22 456667999999999988788888887 5 9999999888641
Q ss_pred ----C---------------------------------------------------------------------------
Q 017402 229 ----K--------------------------------------------------------------------------- 229 (372)
Q Consensus 229 ----~--------------------------------------------------------------------------- 229 (372)
+
T Consensus 200 ~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (457)
T 1xm9_A 200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL 279 (457)
T ss_dssp HTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG
T ss_pred ccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH
Confidence 1
Q ss_pred -----------------chHHHHHHHHHHHhhcCCCch------hHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHh
Q 017402 230 -----------------LIREKKEAATALYALTSFPEN------RKRVVSCGAVPILMRLADAG----LERAVEVLSILV 282 (372)
Q Consensus 230 -----------------~~~~~~~a~~aL~~L~~~~~~------~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~ 282 (372)
++.+++.|+++|+||+..+.. +..+.+.|++|.|+++|.++ +..|+++|.||+
T Consensus 280 ~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 280 YHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359 (457)
T ss_dssp GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHh
Confidence 124566789999999975432 22334689999999999665 678999999999
Q ss_pred CCHhHHHHHHhccchHHHHHHHHhcCCh------hHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc-cHHHH
Q 017402 283 KCKEGREEMMRVSGCVGVFVKMLKTGSS------RAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD-NEKVR 355 (372)
Q Consensus 283 ~~~~~~~~i~~~~g~i~~L~~ll~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~-~~~v~ 355 (372)
.+++.+..+.. |+++.|+++|...++ .+...++.+|.++...+++.+..+.+.|+++.|++++.++ +++++
T Consensus 360 ~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~ 437 (457)
T 1xm9_A 360 RHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437 (457)
T ss_dssp TSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred cCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHH
Confidence 99888776654 699999999987543 5677999999999988899999999999999999999999 99999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 017402 356 RNANNLIQTLSGNPSMQ 372 (372)
Q Consensus 356 ~~a~~~L~~l~~~~~~~ 372 (372)
++|.++|.++..+++.|
T Consensus 438 ~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 438 EAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHHHcchhhh
Confidence 99999999999888764
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=3.3e-30 Score=248.82 Aligned_cols=276 Identities=19% Similarity=0.247 Sum_probs=242.6
Q ss_pred CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402 88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN 166 (372)
Q Consensus 88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~ 166 (372)
..|.|+++|++. +++++|.+|+++|.|++.+++++++.+++.|+||.|+.+|+ +++.++++.|+++|.||+.+ +..
T Consensus 101 ~ip~LV~lL~~~-~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~--s~~~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 101 LIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp HHHHHHHHTTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHH
Confidence 358899999764 47899999999999999999999999999999999999999 89999999999999999987 667
Q ss_pred cccccccCChHHHHHHHhcCC-----hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHH
Q 017402 167 KVGLVAEGAVSRVVAALRFGS-----PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATAL 241 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L~~~~-----~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL 241 (372)
+..+.+.|+++.|+.+|...+ ...+..++++|.+++........+....|+++.|+.++.+.++ +++..|+++|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCH-HHHHHHHHHH
Confidence 888889999999999997654 4567889999999998776655554436899999999998887 9999999999
Q ss_pred HhhcCCCc-hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhH-HHHHHhccchHHHHHHHHhcCChhHHHh
Q 017402 242 YALTSFPE-NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEG-REEMMRVSGCVGVFVKMLKTGSSRAVQC 315 (372)
Q Consensus 242 ~~L~~~~~-~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~-~~~i~~~~g~i~~L~~ll~~~~~~~~~~ 315 (372)
++|+..++ ....+++.|+++.|+.+|.++ ...++.+|+|++...+. +..+.. .|+++.|+.++.+.++.+++.
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKE 335 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGCC-CTTCSSHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccchHHHHHHhcCCCHHHHHH
Confidence 99998775 445677889999999999655 67899999999876544 455566 899999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 316 SLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 316 a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
|+++|.+|+.++++.+..+.+.|+++.|+.++++++.++|+.|+++|.++..+
T Consensus 336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 99999999999899999999999999999999999999999999999988653
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=1.4e-29 Score=250.96 Aligned_cols=271 Identities=13% Similarity=0.163 Sum_probs=234.7
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHh-hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc-
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLT-ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK- 167 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~- 167 (372)
+.++.+|.++..+.+++..|++.|.+|+. +++.+..++ +.|++|.|+.+|+ +++..++..++++|.||+.+.+.+
T Consensus 380 ~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~--s~d~~i~~~al~~L~NLt~~~d~q~ 456 (810)
T 3now_A 380 EACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLAR--GGNQSCLYGVVTTFVNLCNAYEKQE 456 (810)
T ss_dssp HHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHH--TTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhC--CCChHHHHHHHHHHHHHcCCchhhh
Confidence 45777887754478999999999999998 566788877 5799999999999 788999999999999999864211
Q ss_pred --------------------------------ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhcccc
Q 017402 168 --------------------------------VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYP 215 (372)
Q Consensus 168 --------------------------------~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~ 215 (372)
..+++.|+++.|+.+|+++++.+++.|+|+|.|++.+++++..+.+ .
T Consensus 457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~-~ 535 (810)
T 3now_A 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQ-E 535 (810)
T ss_dssp CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-T
T ss_pred hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-C
Confidence 4667889999999999999999999999999999988889999988 7
Q ss_pred chHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH---hcCchHHHHHHHhhh-----HHHHHHHHHHHhCC-Hh
Q 017402 216 YAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV---SCGAVPILMRLADAG-----LERAVEVLSILVKC-KE 286 (372)
Q Consensus 216 g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~---~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~-~~ 286 (372)
|++++|+.+|+++.+ ..++.|+++|.||+.+.+....+. ..|++++|+.+|.++ ...++.+|.||+.. ++
T Consensus 536 Gaip~Lv~LL~s~~~-~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~ 614 (810)
T 3now_A 536 GGVKALLRMALEGTE-KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614 (810)
T ss_dssp THHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHccCCH-HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH
Confidence 999999999999877 899999999999987544332221 246999999999643 35699999999997 56
Q ss_pred HHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHh-cChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 287 GREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRK-EGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 287 ~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
.+..+++ +|+++.|+.++.+.++.+++.|+.+|.|++.+ ++.+..+.+ .|+++.|+.++.+.+..+|+.|+++|.++
T Consensus 615 ~~~~Ii~-aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanL 692 (810)
T 3now_A 615 VRQRIIK-EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAII 692 (810)
T ss_dssp HHHHHHH-TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 7778888 79999999999999999999999999999986 777777775 78999999999999999999999999999
Q ss_pred hc
Q 017402 366 SG 367 (372)
Q Consensus 366 ~~ 367 (372)
+.
T Consensus 693 t~ 694 (810)
T 3now_A 693 TS 694 (810)
T ss_dssp HH
T ss_pred hC
Confidence 86
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=1.9e-29 Score=244.80 Aligned_cols=276 Identities=19% Similarity=0.239 Sum_probs=243.4
Q ss_pred CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402 88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN 166 (372)
Q Consensus 88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~ 166 (372)
..|.|+++|.++ ++++.+.+|+++|.+++.++++++..+++.|+||.|+.+|. +.+.++++.|+++|.||+.+ +++
T Consensus 120 ~ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~--s~~~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 120 LIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp HHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhccCHHH
Confidence 347899999765 47899999999999999999989999999999999999999 89999999999999999987 678
Q ss_pred cccccccCChHHHHHHHhcCC-----hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHH
Q 017402 167 KVGLVAEGAVSRVVAALRFGS-----PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATAL 241 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L~~~~-----~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL 241 (372)
+..+.+.|+++.|+.+|...+ ...+..++++|.+++.+......+....|++|.|+.++.++++ +++..|+++|
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~a~~aL 275 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAI 275 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH-HHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcH-HHHHHHHHHH
Confidence 889999999999999997643 4567889999999998776555554436899999999999887 9999999999
Q ss_pred HhhcCCCc-hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHh-HHHHHHhccchHHHHHHHHhcCChhHHHh
Q 017402 242 YALTSFPE-NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKE-GREEMMRVSGCVGVFVKMLKTGSSRAVQC 315 (372)
Q Consensus 242 ~~L~~~~~-~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~L~~ll~~~~~~~~~~ 315 (372)
.+++..++ ....+++.|+++.|+.+|.++ ...++.+|+|++...+ .+..+.. .|+++.|+.++.+.++.+++.
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh-cccHHHHHHHHcCCCHHHHHH
Confidence 99998765 556677899999999999655 6789999999987554 4555666 899999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 316 SLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 316 a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
|+++|.+|+.++++.+..+.+.|+++.|+.++.+++.++|+.|+++|.++..+
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999899999999999999999999999999999999999988653
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=6.9e-30 Score=245.39 Aligned_cols=277 Identities=19% Similarity=0.171 Sum_probs=228.3
Q ss_pred CchhHHHHhhccCCChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccc
Q 017402 88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN 166 (372)
Q Consensus 88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~ 166 (372)
..|.|+++|.++ +++++..|+++|.+++.. ++++|..|++.|+|+.|+++|++ ..+.++++.++.+|.||+.++++
T Consensus 91 ~Ip~LV~LL~s~--~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s-~~~~~~~e~aa~aL~nLS~~~~~ 167 (584)
T 3l6x_A 91 GIPVLVGLLDHP--KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK-ARDMDLTEVITGTLWNLSSHDSI 167 (584)
T ss_dssp HHHHHHHGGGCS--SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHH-CCSHHHHHHHHHHHHHHTTSGGG
T ss_pred CcHHHHHHHCCC--CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCchh
Confidence 347899999876 899999999999999985 68899999999999999999994 25788999999999999999999
Q ss_pred cccccccCChHHHHHHHh------------------cCChHHHHHHHHHHHHhccccc-chhhhccccchHHHHHHHhhc
Q 017402 167 KVGLVAEGAVSRVVAALR------------------FGSPDCRAIAATIITSLAVVEV-NKATIGDYPYAINALVSLLQN 227 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L~------------------~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~ 227 (372)
+..|++ ++++.|++++. ..+.+++.+|+++|.||+..++ ++..|.+..|+|+.|+.++++
T Consensus 168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 999985 67999999872 1257899999999999998764 477666545677777776643
Q ss_pred -------------------------------------------------------------------------CCchHHH
Q 017402 228 -------------------------------------------------------------------------GKLIREK 234 (372)
Q Consensus 228 -------------------------------------------------------------------------~~~~~~~ 234 (372)
.....++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 1112455
Q ss_pred HHHHHHHHhhcCCC-----chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHH
Q 017402 235 KEAATALYALTSFP-----ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKML 305 (372)
Q Consensus 235 ~~a~~aL~~L~~~~-----~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll 305 (372)
+.|+++|.||+... .++..+.+.|+++.|+++|.++ .+.++.+|+||+.+...+..| . .|+++.|+.+|
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~ip~LV~LL 404 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G-KHAIPNLVKNL 404 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H-hCCHHHHHHHh
Confidence 66777777776543 1233445678899999999664 778999999999998888766 4 68999999999
Q ss_pred hcC--------ChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHHHHHHhcCCC
Q 017402 306 KTG--------SSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD--NEKVRRNANNLIQTLSGNPS 370 (372)
Q Consensus 306 ~~~--------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~ 370 (372)
.++ +..+...|+++|.+|+..++++++.+.+.|+++.|+.+++++ .+++++.|+++|.+|..+..
T Consensus 405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 405 PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp SSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred cCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 875 356788999999999988899999999999999999999986 89999999999999987653
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=1.3e-29 Score=244.74 Aligned_cols=277 Identities=18% Similarity=0.208 Sum_probs=239.0
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN 166 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~ 166 (372)
.+++++.|.++ +++.+.+|+..++++... ...-.+.+++.|+||.|+++|+. +++++++..|+++|.|++.+ +++
T Consensus 59 i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 59 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHH
Confidence 48899999876 899999999999987642 22246789999999999999983 35688999999999999776 677
Q ss_pred cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCc----hHHHHHHHHHH
Q 017402 167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKL----IREKKEAATAL 241 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~----~~~~~~a~~aL 241 (372)
+..+++.|+||.|+.+|++++.++++.|+++|.+++.+. +.+..+.. .|+++.|+.++.+.+. ...+..++++|
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 888999999999999999999999999999999999865 56777777 7999999999987543 24678999999
Q ss_pred HhhcCCCchhHHH-HhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhH
Q 017402 242 YALTSFPENRKRV-VSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCS 316 (372)
Q Consensus 242 ~~L~~~~~~~~~i-~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a 316 (372)
.|++.+......+ ...|+++.|++++.++ ...++++|++|+.....+...+...|+++.|+.++.+.+..++..|
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 294 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHH
Confidence 9999977655444 4568999999999654 6789999999999877776665558999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
+.+|++++..+++.+..+++.|+++.|+.+++++++.+|+.|+++|.++..+.
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~ 347 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 347 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 99999999998999999999999999999999999999999999999997654
No 13
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=1.8e-29 Score=230.63 Aligned_cols=239 Identities=19% Similarity=0.173 Sum_probs=208.2
Q ss_pred chhHHHHhhcc---------CCChHHHHHHHHHHHHHhhcChHHHHHHhhc-CCHHHHHHHHhhcCCChhHHHHHHHHHh
Q 017402 89 PQTLISVLTSK---------SSPLESKLESLTQLTKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDGFTLQEKALSLLL 158 (372)
Q Consensus 89 ~~~li~~L~~~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~ 158 (372)
.+.|+.+|... ..+++.+.+|+++|.+++.+++.++..+... |.||.|+++|+ ++++++++.|+++|.
T Consensus 75 l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~--s~~~~v~~~A~~aL~ 152 (354)
T 3nmw_A 75 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK--SESEDLQQVIASVLR 152 (354)
T ss_dssp HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 46788888531 1246789999999999999888789888765 55999999999 889999999999999
Q ss_pred cCCCC--ccccccccccCChHHHHHHH-hcCChHHHHHHHHHHHHhcc-cccchhhhccccchHHHHHHHhhcCCch---
Q 017402 159 NLSLD--DDNKVGLVAEGAVSRVVAAL-RFGSPDCRAIAATIITSLAV-VEVNKATIGDYPYAINALVSLLQNGKLI--- 231 (372)
Q Consensus 159 ~l~~~--~~~~~~i~~~g~i~~lv~~L-~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~--- 231 (372)
||+.. ++++..|.+.|+|+.|+++| ++++.++++.|+++|++|+. .++++..|....|+|+.|+++|++.++.
T Consensus 153 nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~ 232 (354)
T 3nmw_A 153 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 232 (354)
T ss_dssp HHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCC
T ss_pred HHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccH
Confidence 99985 56889999999999999975 56789999999999999998 5578888873379999999999987652
Q ss_pred HHHHHHHHHHHhhcC----CCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC-CHhHHHHHHhccchHHHHH
Q 017402 232 REKKEAATALYALTS----FPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK-CKEGREEMMRVSGCVGVFV 302 (372)
Q Consensus 232 ~~~~~a~~aL~~L~~----~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~ 302 (372)
++++.|+++|+||+. +++++..+++.|+++.|+.+|.++ ++.|+++|+||+. +++.+..+.+ .|+++.|+
T Consensus 233 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~G~i~~Lv 311 (354)
T 3nmw_A 233 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD-MGAVSMLK 311 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHHHH
Confidence 489999999999995 778999999999999999999655 7889999999995 6888888888 89999999
Q ss_pred HHHhcCChhHHHhHHHHHHHHhcCCHHH
Q 017402 303 KMLKTGSSRAVQCSLFTLSCLCCCSQEI 330 (372)
Q Consensus 303 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 330 (372)
+++.++++.+++.|+.+|.+|+.+.++.
T Consensus 312 ~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 312 NLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999886643
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=2.8e-27 Score=229.72 Aligned_cols=275 Identities=17% Similarity=0.193 Sum_probs=242.6
Q ss_pred CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402 88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN 166 (372)
Q Consensus 88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~ 166 (372)
..|.|+.+|.++ ++++++..|++.|.+++.++++++..+++.|+++.|+.+|. +.+.++++.|+++|.+|+.+ +.+
T Consensus 118 ~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 118 VVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG--SSSDDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp CHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhCCChhh
Confidence 457789999865 34899999999999999988899999999999999999999 78999999999999999877 556
Q ss_pred cccccccCChHHHHHHH-hcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 167 KVGLVAEGAVSRVVAAL-RFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
+..+.+.|+++.|+.+| .+.+..++..++++|.+|+........... .|+++.|+.++.+.+. .++..|+++|.+|+
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~~~-~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDE-EVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCCCH-HHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCCCH-HHHHHHHHHHHHHH
Confidence 78888899999999999 567899999999999999987544444444 6999999999998877 99999999999999
Q ss_pred CCCchh-HHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcC-ChhHHHhHHH
Q 017402 246 SFPENR-KRVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTG-SSRAVQCSLF 318 (372)
Q Consensus 246 ~~~~~~-~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~-~~~~~~~a~~ 318 (372)
..++.+ ..+++.|+++.|+.+|.++ +..++.+|++|+.. +.....+.. .|+++.|+.++.+. ++.++..|++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~ 351 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACW 351 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHH
Confidence 876544 6778899999999999654 77899999999985 445556666 89999999999988 8999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 319 TLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 319 ~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
+|.+++..+++....+++.|+++.|+.++++++++++..|.++|.++..+
T Consensus 352 ~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 352 TISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999988888888999999999999999999999999999999988754
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=1.3e-27 Score=209.11 Aligned_cols=234 Identities=21% Similarity=0.265 Sum_probs=213.2
Q ss_pred CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc-cccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc-ccch
Q 017402 131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD-DNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNK 208 (372)
Q Consensus 131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~~~ 208 (372)
|+++.|+.+|. +.+++++..|+.+|.+++.++ +++..+.+.|+++.|+.+|++++.+++..++++|.+++.. ++++
T Consensus 2 ~~i~~L~~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLT--STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 67999999999 778999999999999998775 4888899999999999999999999999999999999987 5778
Q ss_pred hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-CCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC
Q 017402 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK 283 (372)
Q Consensus 209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~ 283 (372)
..+.. .|+++.|+.++++++. .++..|+++|.+|+. +++++..+++.|+++.|++++.++ +..++.+|.+|+.
T Consensus 80 ~~~~~-~~~i~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 80 KAIVD-AGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHH-TTHHHHHHHHTTCSSH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHH-CCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88877 7999999999998776 999999999999995 667889999999999999999654 7889999999998
Q ss_pred CHhHH-HHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHH
Q 017402 284 CKEGR-EEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI 362 (372)
Q Consensus 284 ~~~~~-~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L 362 (372)
..+.. ..+.. .|+++.|+.++.+.++.++..|+.+|.+++..+++.+..+.+.|+++.|+.+++++++++++.|.++|
T Consensus 158 ~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 158 GPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp SCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 55544 56666 89999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 017402 363 QTLSGNP 369 (372)
Q Consensus 363 ~~l~~~~ 369 (372)
.+|....
T Consensus 237 ~~l~~~~ 243 (252)
T 4hxt_A 237 ENIKSGG 243 (252)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 9998765
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=2.6e-27 Score=229.80 Aligned_cols=272 Identities=18% Similarity=0.192 Sum_probs=235.3
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcC---CChhHHHHHHHHHhcCCCCccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHS---DGFTLQEKALSLLLNLSLDDDN 166 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~---~~~~~~~~a~~~L~~l~~~~~~ 166 (372)
|.|+.+|.++ +++++..|+++|.+++.+++++|..+.+.|+++.|+.+|...+ ....++..++++|.+++.+...
T Consensus 165 p~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~ 242 (529)
T 3tpo_A 165 PAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP 242 (529)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccc
Confidence 6688888776 8999999999999999989999999999999999999998321 1235688999999999988655
Q ss_pred ccccc-ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch-hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 167 KVGLV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK-ATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 167 ~~~i~-~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
...+. ..|+++.|+.+|.+++++++..++++|.+++...+.+ ..+.. .|+++.|+.+|.+.+. .++..|+.+|+|+
T Consensus 243 ~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~-~v~~~a~~aL~nl 320 (529)
T 3tpo_A 243 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGATEL-PIVTPALRAIGNI 320 (529)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT-TTCHHHHHHHHTCSCH-HHHHHHHHHHHHH
T ss_pred hhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh-ccchHHHHHHhcCCCh-hHHHHHHHHHHHH
Confidence 55444 3789999999999999999999999999999876544 44555 7999999999998877 9999999999999
Q ss_pred cCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHH-HHHhccchHHHHHHHHhcCChhHHHhHHH
Q 017402 245 TSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGRE-EMMRVSGCVGVFVKMLKTGSSRAVQCSLF 318 (372)
Q Consensus 245 ~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~-~i~~~~g~i~~L~~ll~~~~~~~~~~a~~ 318 (372)
+..+ +.+..+++.|+++.|+.+|.++ ++.++++|+||+.+..... .+.. .|+++.|+.++.+++..++..|++
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHH
Confidence 8754 5778889999999999999655 6789999999998655544 4555 899999999999999999999999
Q ss_pred HHHHHhcC-CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 319 TLSCLCCC-SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 319 ~L~~l~~~-~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
+|.+++.+ +++....+++.|+++.|+.++.+.+++++..+.++|.++-
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999864 5688888999999999999999999999999999998764
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=2.9e-27 Score=229.55 Aligned_cols=275 Identities=20% Similarity=0.174 Sum_probs=241.1
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcCh-HHHHHHhhcCCHHHHHHHHhhcCCC-hhHHHHHHHHHhcCCCC-cc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDS-ASRRKLTESGAVSAVLNCLKIHSDG-FTLQEKALSLLLNLSLD-DD 165 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~-~~~~~~a~~~L~~l~~~-~~ 165 (372)
.|.++..|.++ +++.+..|++.|.+++.... .....+++.|+++.|+.+|. +.+ +.++..|+++|.+++.+ ++
T Consensus 76 l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~--~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 76 LPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT--REDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT--CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHhCCCHH
Confidence 47899999765 89999999999999976543 57888999999999999999 555 89999999999999987 77
Q ss_pred ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
++..+++.|+++.|+.+|.+++..++..|+++|.+++... .++..+.. .|+++.|+.++....+..++..|+++|++|
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999999999999765 46777777 699999999995444449999999999999
Q ss_pred cCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHH
Q 017402 245 TSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTL 320 (372)
Q Consensus 245 ~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L 320 (372)
+............|+++.|+.++.++ ...++.+|.+|+.....+...+...|+++.|+.++.+.++.++..|+.+|
T Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 231 CRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 310 (528)
T ss_dssp HCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 99765555566789999999999554 67899999999998776654443379999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcChhHHHHHHhhcc-cHHHHHHHHHHHHHHhcC
Q 017402 321 SCLCCCSQEICGDSRKEGVLDICMGLLEDD-NEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 321 ~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~ 368 (372)
.+++.+++.....+++.|+++.|+.++.++ ++.++..|+++|.++...
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 999998889999999999999999999998 999999999999998754
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=1.7e-26 Score=224.33 Aligned_cols=275 Identities=17% Similarity=0.162 Sum_probs=242.3
Q ss_pred CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402 88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN 166 (372)
Q Consensus 88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~ 166 (372)
..|.|+..|.+. ++++++..|++.|.+++..+++++..+++.|+++.|+.+|. +.++++++.|+++|.+++.+ +.+
T Consensus 131 ~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~--~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 131 VVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY--TGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp CHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH--HCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCccc
Confidence 457788888764 37899999999999999988889999999999999999999 78899999999999999987 567
Q ss_pred cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
+..+...|+++.|+.+|.+.+..++..++++|.+|+... ........ .++++.|+.++.+.+. .++..|+++|.+|+
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSMDT-ETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCCCH-HHHHHHHHHHHHHH
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCCCH-HHHHHHHHHHHHHh
Confidence 778888999999999999999999999999999999775 44444444 6999999999998876 99999999999999
Q ss_pred CCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCH-hHHHHHHhccchHHHHHHHHhcCChhHHHhHHHH
Q 017402 246 SFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCK-EGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFT 319 (372)
Q Consensus 246 ~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 319 (372)
... +....+++.|+++.|+.++.++ ++.++.+|.+++... .....+.. .|+++.|+.++.+.++.++..|+++
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~a 364 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIKKEACWT 364 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHHHHHHHH
Confidence 864 5677888999999999999654 678999999999764 44555565 7999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 320 LSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 320 L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
|.+++.++++....+++.|+++.|+.++.+++++++..|.++|.++...
T Consensus 365 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999988888888899999999999999999999999999999988653
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=3.2e-27 Score=207.12 Aligned_cols=233 Identities=19% Similarity=0.240 Sum_probs=207.5
Q ss_pred CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-c
Q 017402 86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-D 164 (372)
Q Consensus 86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~ 164 (372)
....+.++..|.++ +++++..|++.|.++...+++++..+.+.|+++.|+++|+ +.+++++..|+.+|.+++.+ +
T Consensus 11 ~~~~~~~~~~L~s~--~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 11 GSELPQMTQQLNSD--DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp TCSHHHHHHHHHSS--CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCH
T ss_pred cchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCH
Confidence 44568899999886 8899999999998766657778999999999999999999 77899999999999999984 7
Q ss_pred cccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch-hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402 165 DNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK-ATIGDYPYAINALVSLLQNGKLIREKKEAATALYA 243 (372)
Q Consensus 165 ~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~ 243 (372)
+++..+.+.|+++.|+.+|++++.+++..|+++|.+++..++++ ..+.. .|+++.|+.++++++. .++..|+++|++
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~-~v~~~a~~~L~~ 164 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNE-QILQEALWALSN 164 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCSCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCCCH-HHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999988887 66777 7999999999998876 999999999999
Q ss_pred hcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHH
Q 017402 244 LTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSL 317 (372)
Q Consensus 244 L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~ 317 (372)
|+..+ +.+..+++.|+++.|+.++.++ ++.++.+|.+|+. .+..+..+.+ .|+++.|+.++.++++.+++.|+
T Consensus 165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 165 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHH
Confidence 99855 6777888999999999999654 7889999999996 4556666776 89999999999999999999999
Q ss_pred HHHHHHhc
Q 017402 318 FTLSCLCC 325 (372)
Q Consensus 318 ~~L~~l~~ 325 (372)
.+|.+++.
T Consensus 244 ~~L~~l~~ 251 (252)
T 4db8_A 244 EALEKLQS 251 (252)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 99999875
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=3.3e-27 Score=206.99 Aligned_cols=232 Identities=22% Similarity=0.276 Sum_probs=209.4
Q ss_pred CCHHHHHHHHhhcCCChhHHHHHHHHHhcC-CCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcc-cccch
Q 017402 131 GAVSAVLNCLKIHSDGFTLQEKALSLLLNL-SLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAV-VEVNK 208 (372)
Q Consensus 131 g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l-~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~-~~~~~ 208 (372)
...+.+++.|. +++++++..|+.+|.++ +.+++++..+.+.|+++.|+.+|++++.+++..|+++|.+++. .++++
T Consensus 12 ~~~~~~~~~L~--s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLN--SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHH--SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 56899999999 89999999999999774 4457778889999999999999999999999999999999998 45778
Q ss_pred hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh-HHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC
Q 017402 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR-KRVVSCGAVPILMRLADAG----LERAVEVLSILVK 283 (372)
Q Consensus 209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~-~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~ 283 (372)
..+.. .|+++.|+.++++++. .++..|+++|+||+.+++++ ..+++.|+++.|++++.++ ++.++.+|.+|+.
T Consensus 90 ~~i~~-~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 90 QAVID-AGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHH-TTHHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHH-cCCHHHHHHHHcCCCH-HHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 88887 7999999999999876 99999999999999999888 8899999999999999654 7889999999998
Q ss_pred CH-hHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHH
Q 017402 284 CK-EGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI 362 (372)
Q Consensus 284 ~~-~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L 362 (372)
.. ..+..+.. .|+++.|+.++.+.++.+++.|+.+|.+++..+++.+..+.+.|+++.|+.+++++++++|+.|.++|
T Consensus 168 ~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 168 GGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp SCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred CChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 55 44555566 89999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHhc
Q 017402 363 QTLSG 367 (372)
Q Consensus 363 ~~l~~ 367 (372)
.+|..
T Consensus 247 ~~l~~ 251 (252)
T 4db8_A 247 EKLQS 251 (252)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 98865
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.95 E-value=8.2e-26 Score=214.63 Aligned_cols=274 Identities=16% Similarity=0.150 Sum_probs=239.6
Q ss_pred CCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cc
Q 017402 87 PNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DD 165 (372)
Q Consensus 87 ~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~ 165 (372)
...|.+++.|.++ +++++|..|++.|.+++..++++...+.+.|+++.|+++|+ +.++++++.|+.+|.+++.+ ++
T Consensus 64 ~~i~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~vr~~a~~~L~~l~~~~~~ 140 (450)
T 2jdq_A 64 GVVARFVEFLKRK-ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS--SEFEDVQEQAVWALGNIAGDSTM 140 (450)
T ss_dssp THHHHHHHHHTCT-TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHccCCHH
Confidence 3457788888764 37899999999999999988888888999999999999999 78999999999999999987 45
Q ss_pred ccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccc-c-chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402 166 NKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVE-V-NKATIGDYPYAINALVSLLQNGKLIREKKEAATALY 242 (372)
Q Consensus 166 ~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~-~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 242 (372)
.+..+.+.|+++.|+.++.+ .+..++..++++|.+++... . .+..+. .++++.|+.++++++. .++..++++|.
T Consensus 141 ~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~~~~-~v~~~a~~~L~ 217 (450)
T 2jdq_A 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLFVSDT-DVLADACWALS 217 (450)
T ss_dssp HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTTCCCH-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHccCCH-HHHHHHHHHHH
Confidence 77778889999999999986 68999999999999999764 2 233333 5899999999998777 99999999999
Q ss_pred hhcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHH-HHHhccchHHHHHHHHhcCChhHHHhH
Q 017402 243 ALTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGRE-EMMRVSGCVGVFVKMLKTGSSRAVQCS 316 (372)
Q Consensus 243 ~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~-~i~~~~g~i~~L~~ll~~~~~~~~~~a 316 (372)
+|+... +.+..+++.|+++.|+.++.++ ++.++.+|.+++...+... .+.. .|+++.|+.++.+.++.++..|
T Consensus 218 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a 296 (450)
T 2jdq_A 218 YLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEA 296 (450)
T ss_dssp HHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCCCHHHHHHH
Confidence 999865 5777888999999999999544 6789999999998765544 4555 7999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
+++|.+++.++++..+.+++.|+++.|+.+++++++++|..|+++|.++..
T Consensus 297 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 297 CWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 999999998888888889999999999999999999999999999998864
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=1.4e-26 Score=202.63 Aligned_cols=232 Identities=23% Similarity=0.312 Sum_probs=209.0
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNK 167 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~ 167 (372)
.|.++..|.++ +++++..|++.|.+++..+++++..+.+.|+++.|+++|+ +.+.+++..++.+|.+++.+ ++++
T Consensus 4 i~~L~~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 4 VEKLVKLLTST--DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHcCChHHH
Confidence 36788999876 6899999999999999988889999999999999999999 78899999999999999988 8888
Q ss_pred ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcc-cccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402 168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAV-VEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 246 (372)
..+.+.|+++.++.+|++++.+++..|+++|.+++. .++++..+.. .|+++.|++++++.+. .++..|+++|+||+.
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDS-EVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHc
Confidence 899999999999999999999999999999999994 5577777877 7999999999998877 999999999999998
Q ss_pred CC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHH
Q 017402 247 FP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTL 320 (372)
Q Consensus 247 ~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L 320 (372)
.. +.+..+++.|+++.|+.++.++ +..++.+|.+|+.. +..+..+.+ .|+++.|++++.++++.+++.|+.+|
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 55 4667888999999999999654 77899999999984 555566666 89999999999999999999999999
Q ss_pred HHHhcCC
Q 017402 321 SCLCCCS 327 (372)
Q Consensus 321 ~~l~~~~ 327 (372)
.+++...
T Consensus 237 ~~l~~~~ 243 (252)
T 4hxt_A 237 ENIKSGG 243 (252)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 9999764
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=8.3e-26 Score=219.42 Aligned_cols=275 Identities=17% Similarity=0.162 Sum_probs=240.1
Q ss_pred CCchhHHHHhhccCCChHHHHHHHHHHHHHhhcC-hHHHHHHhhcCCHHHHHHHHhhcCC-ChhHHHHHHHHHhcCCCC-
Q 017402 87 PNPQTLISVLTSKSSPLESKLESLTQLTKLSKRD-SASRRKLTESGAVSAVLNCLKIHSD-GFTLQEKALSLLLNLSLD- 163 (372)
Q Consensus 87 ~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~-~~~~~~~a~~~L~~l~~~- 163 (372)
...+.++..|.++ +++++..|+..|+++.... ......+++.|+++.|+.+|. +. ++.++..|+++|.+++.+
T Consensus 87 ~~i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~--~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR--ENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp CCHHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS--TTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHhCCC
Confidence 3457899999865 7899999999999997542 345678889999999999998 55 889999999999999986
Q ss_pred ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402 164 DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALY 242 (372)
Q Consensus 164 ~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 242 (372)
++.+..+++.|+++.|+.+|++++.+++..|+++|.+++... +++..+.. .|+++.|+.++.+.+. .++..|+++|+
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~-~v~~~a~~~L~ 240 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSNKP-SLIRTATWTLS 240 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSCCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhccCCH-HHHHHHHHHHH
Confidence 556777888999999999999999999999999999999764 56777776 6999999999998665 89999999999
Q ss_pred hhcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCH-hHHHHHHhccchHHHHHHHHhcCChhHHHhH
Q 017402 243 ALTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCK-EGREEMMRVSGCVGVFVKMLKTGSSRAVQCS 316 (372)
Q Consensus 243 ~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a 316 (372)
+|+... .........|+++.|+.++.++ ...++.+|.+|+... +....+.. .|+++.|+.++.+.++.++..|
T Consensus 241 ~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a 319 (530)
T 1wa5_B 241 NLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPA 319 (530)
T ss_dssp HHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHH
Confidence 999876 5556667789999999999554 678999999999864 45566666 7999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
+.+|.+++.++++....+++.|+++.|+.++.++++.++..|.++|.++..+
T Consensus 320 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 320 LRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999998888888899999999999999999999999999999998754
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=4.9e-25 Score=209.26 Aligned_cols=272 Identities=15% Similarity=0.150 Sum_probs=235.5
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc--cc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD--DN 166 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~--~~ 166 (372)
.|.++.+|.++ ++++|..|++.|.+++..++.++..+.+.|+++.|+.+|.+ +.+.+++..++++|.+++.+. ..
T Consensus 109 i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 109 VPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 46788888865 88999999999999999888899999999999999999983 267899999999999998764 33
Q ss_pred cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
+..+. .|+++.|+.++++++..++..++++|.+++... +....+.. .|+++.|+.++.+.+. .++..|+++|.+++
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~ 262 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDY-KVVSPALRAVGNIV 262 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCH-HHHHHHHHHHHHHT
T ss_pred CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCch-hHHHHHHHHHHHHh
Confidence 33333 899999999999999999999999999999765 44555555 6999999999997766 99999999999999
Q ss_pred CCCc-hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHH
Q 017402 246 SFPE-NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFT 319 (372)
Q Consensus 246 ~~~~-~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 319 (372)
...+ ....+++.|+++.|+.++.++ +..++.+|.+++. .+.....+.+ .|+++.|+.++.++++.++..|+++
T Consensus 263 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 263 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID-ANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 8664 556678889999999999654 7789999999997 5566666776 7899999999999999999999999
Q ss_pred HHHHhcC-CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 320 LSCLCCC-SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 320 L~~l~~~-~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
|.+++.. +++..+.+++.|+++.|+.++++++++++..|.++|.++..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999975 57888888899999999999999999999999999987753
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.94 E-value=2.3e-25 Score=215.95 Aligned_cols=275 Identities=17% Similarity=0.216 Sum_probs=234.5
Q ss_pred CCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhh-cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402 87 PNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTE-SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165 (372)
Q Consensus 87 ~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 165 (372)
...|.++.+|.++ ++++|..|+..|.+++.+ +.++..+.+ .|+++.|+++|.+ +.+.+++..++.+|.+|+.+++
T Consensus 17 ~~i~~Lv~lL~~~--~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 17 RAIPELTKLLNDE--DQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp CHHHHHHHHHTCS--CHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhHHHHHHHhCCC--CHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCch
Confidence 3357899999865 899999999999999985 457777765 4899999999983 2488999999999999999988
Q ss_pred ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
++..+.+.|+++.|+++|++++++++..|+++|.+++..+ +.+..+.+ .|+++.|+.++++++. +++..++.+|.++
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~-~~~~~~~~~L~~l 170 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNV-KFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCCCH-HHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHhcCCH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 55666666 7999999999998776 8899999999999
Q ss_pred cCC-CchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHH------------------
Q 017402 245 TSF-PENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGV------------------ 300 (372)
Q Consensus 245 ~~~-~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~------------------ 300 (372)
+.. ++++..+++.|+++.|++++.++ .+.+..+|.+|+.+++.+..+.. .|+++.
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHHHHHHH
Confidence 974 67888999999999999999654 45678889999998888887776 455544
Q ss_pred ---------------------HHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc--cHHHHHH
Q 017402 301 ---------------------FVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD--NEKVRRN 357 (372)
Q Consensus 301 ---------------------L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~ 357 (372)
|++++.+.++.+++.|+++|.+++.++++.+..+.+.|+++.|+.++.+. ++.++..
T Consensus 250 ~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~ 329 (529)
T 1jdh_A 250 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 329 (529)
T ss_dssp HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHH
Confidence 44555556778888899999999988888999999999999999999863 4799999
Q ss_pred HHHHHHHHhcC
Q 017402 358 ANNLIQTLSGN 368 (372)
Q Consensus 358 a~~~L~~l~~~ 368 (372)
|.++|.+|..+
T Consensus 330 a~~~L~nl~~~ 340 (529)
T 1jdh_A 330 AICALRHLTSR 340 (529)
T ss_dssp HHHHHHHHTSS
T ss_pred HHHHHHHHHcC
Confidence 99999998754
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.94 E-value=2.7e-25 Score=220.71 Aligned_cols=277 Identities=17% Similarity=0.211 Sum_probs=237.8
Q ss_pred CCCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc-CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC
Q 017402 85 ANPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD 163 (372)
Q Consensus 85 ~~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~ 163 (372)
.....|.|+.+|.+. ++.+|..|+..|.+++.+.+ ++..+... |+++.|+++|.+ +.+.+++..|+.+|.+|+.+
T Consensus 12 ~~g~i~~Lv~lL~~~--~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~ 87 (644)
T 2z6h_A 12 ATRAIPELTKLLNDE--DQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH 87 (644)
T ss_dssp CTTTHHHHHHHHTCS--CHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTS
T ss_pred hhchHHHHHHHHcCC--CHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcC
Confidence 344568899999865 88999999999999998654 77777654 899999999983 24889999999999999999
Q ss_pred ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402 164 DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALY 242 (372)
Q Consensus 164 ~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 242 (372)
++++..+.+.|+++.|+++|+++++.++..|+++|.+++... ..+..+.. .|+++.|+.+|++.+. +++..++.+|.
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~-~~~~~a~~~L~ 165 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNV-KFLAITTDCLQ 165 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCH-HHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcCCH-HHHHHHHHHHH
Confidence 889999999999999999999999999999999999999875 45556666 6999999999998876 88888999999
Q ss_pred hhcC-CCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHH-------------
Q 017402 243 ALTS-FPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVK------------- 303 (372)
Q Consensus 243 ~L~~-~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~------------- 303 (372)
+|+. +++++..+++.|+++.|++++.++ .+.++.+|.+|+.++..+..++. .|+++.|+.
T Consensus 166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~~~a 244 (644)
T 2z6h_A 166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNC 244 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHHHTTTTCSCHHHHHHH
T ss_pred HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhcCCHHHHHHH
Confidence 9997 678999999999999999999654 56789999999999999888887 566665544
Q ss_pred --------------------------HHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcc--cHHHH
Q 017402 304 --------------------------MLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDD--NEKVR 355 (372)
Q Consensus 304 --------------------------ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~ 355 (372)
++.+.++.+++.|+++|.+++..+++.+..+.+.|+++.|+.++.+. .+.++
T Consensus 245 ~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 245 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 44556677888888999999888788899999999999999999874 37999
Q ss_pred HHHHHHHHHHhcC
Q 017402 356 RNANNLIQTLSGN 368 (372)
Q Consensus 356 ~~a~~~L~~l~~~ 368 (372)
..|.++|.+|...
T Consensus 325 ~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 325 EPAICALRHLTSR 337 (644)
T ss_dssp HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999753
No 27
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.94 E-value=4.4e-26 Score=194.65 Aligned_cols=195 Identities=17% Similarity=0.194 Sum_probs=170.9
Q ss_pred CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-c
Q 017402 86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-D 164 (372)
Q Consensus 86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~ 164 (372)
....|.++++|.+++...+++..|++.|.+++..+++++..+++.|+||.|+++|+ ++++++++.|+++|.||+.+ +
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~--s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK--VQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCH
Confidence 44568899999887333388999999999999989999999999999999999999 78999999999999999985 8
Q ss_pred cccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhh---cC------------
Q 017402 165 DNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQ---NG------------ 228 (372)
Q Consensus 165 ~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~---~~------------ 228 (372)
+++..|.+.|+|+.|+++|++ ++.++++.|+.+|++|+..+++|..|.. ++|++|+.++. ++
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccccccccc
Confidence 899999999999999999984 7999999999999999999999999987 57999998763 11
Q ss_pred CchHHHHHHHHHHHhhcCC-CchhHHHHhc-CchHHHHHHHhhh----------HHHHHHHHHHHhCC
Q 017402 229 KLIREKKEAATALYALTSF-PENRKRVVSC-GAVPILMRLADAG----------LERAVEVLSILVKC 284 (372)
Q Consensus 229 ~~~~~~~~a~~aL~~L~~~-~~~~~~i~~~-g~v~~L~~ll~~~----------~e~a~~~L~~L~~~ 284 (372)
.+..++.+|+.+|+||+.. +++|..+.+. |+|+.|+.+++++ +|+|+.+|.||+..
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1348999999999999985 4899999987 6789999999542 68999999999863
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.94 E-value=3.6e-25 Score=214.58 Aligned_cols=275 Identities=19% Similarity=0.188 Sum_probs=235.9
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNK 167 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~ 167 (372)
.+.+++.|.++ .+++++..|+..|.+++.. ++++..+.+.|+++.|+++|+ +++++++..|+.+|.+++.+ ++.+
T Consensus 61 i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 61 VSAIVRTMQNT-NDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcchH
Confidence 46788888764 4789999999999999984 569999999999999999999 78899999999999999987 5667
Q ss_pred ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc-ccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402 168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 246 (372)
..+.+.|+++.|+++|++++.+++..++.+|.+++.. ++++..+.. .|+++.|+.++++.++...+..++.+|++|+.
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 7788899999999999999999999999999999975 477888887 69999999999988765777889999999999
Q ss_pred CCchhHHHHhcCchHHHHHHHhh---------------------------------------h----HHHHHHHHHHHhC
Q 017402 247 FPENRKRVVSCGAVPILMRLADA---------------------------------------G----LERAVEVLSILVK 283 (372)
Q Consensus 247 ~~~~~~~i~~~g~v~~L~~ll~~---------------------------------------~----~e~a~~~L~~L~~ 283 (372)
+++++..+++.|+++.|+.++.+ + ++.++.+|++|+.
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 99999999999988887766522 1 4557788888877
Q ss_pred C-HhHHHHHHhccchHHHHHHHHhcC--ChhHHHhHHHHHHHHhcCCHH---HHHHHHhcChhHHHHHHhhccc-HHHHH
Q 017402 284 C-KEGREEMMRVSGCVGVFVKMLKTG--SSRAVQCSLFTLSCLCCCSQE---ICGDSRKEGVLDICMGLLEDDN-EKVRR 356 (372)
Q Consensus 284 ~-~~~~~~i~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~g~~~~l~~ll~~~~-~~v~~ 356 (372)
. ++.+..+.+ .|+++.|++++.+. ++.+++.|+.+|++++..+++ .+..+.+.|+++.|+.++++++ +.+++
T Consensus 296 ~~~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~ 374 (529)
T 1jdh_A 296 NNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374 (529)
T ss_dssp TCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHH
T ss_pred CCHHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHH
Confidence 5 457777777 78999999999763 378999999999999986543 5778999999999999999876 69999
Q ss_pred HHHHHHHHHhcCC
Q 017402 357 NANNLIQTLSGNP 369 (372)
Q Consensus 357 ~a~~~L~~l~~~~ 369 (372)
.|.++|.++..+.
T Consensus 375 ~a~~~l~nl~~~~ 387 (529)
T 1jdh_A 375 ATVGLIRNLALCP 387 (529)
T ss_dssp HHHHHHHHHTTSG
T ss_pred HHHHHHHHHhcCh
Confidence 9999999988654
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=216.26 Aligned_cols=275 Identities=19% Similarity=0.183 Sum_probs=235.0
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNK 167 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~ 167 (372)
.+.++..|.++ .+++++..|+..|.+++.. ++++..+.+.|+++.|+++|+ +.++.++..|+.+|.+++.+ +..+
T Consensus 58 i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 58 VSAIVRTMQNT-NDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHSC-CCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHhCcchhH
Confidence 46788888764 4789999999999999985 569999999999999999999 78899999999999999877 4566
Q ss_pred ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcc-cccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402 168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAV-VEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 246 (372)
..+.+.|+++.|+++|++++..++..++.+|.+++. +++++..+.. .|+++.|+.++++......+..++.+|+||+.
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 777789999999999999999899999999999996 5578888888 79999999999987655788999999999999
Q ss_pred CCchhHHHHhcCchHHHHHHHhh---------------------------------------h----HHHHHHHHHHHhC
Q 017402 247 FPENRKRVVSCGAVPILMRLADA---------------------------------------G----LERAVEVLSILVK 283 (372)
Q Consensus 247 ~~~~~~~i~~~g~v~~L~~ll~~---------------------------------------~----~e~a~~~L~~L~~ 283 (372)
+++++..+++.|+++.|+.++.+ + ++.++.+|.+|+.
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999998888776532 1 4557778888877
Q ss_pred C-HhHHHHHHhccchHHHHHHHHhcCC--hhHHHhHHHHHHHHhcCCH---HHHHHHHhcChhHHHHHHhhccc-HHHHH
Q 017402 284 C-KEGREEMMRVSGCVGVFVKMLKTGS--SRAVQCSLFTLSCLCCCSQ---EICGDSRKEGVLDICMGLLEDDN-EKVRR 356 (372)
Q Consensus 284 ~-~~~~~~i~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~~~~l~~ll~~~~-~~v~~ 356 (372)
. ++.+..+.+ .|+++.|+.++.+.+ +.+++.|+.+|.+|+..++ ..+..+++.|+++.|+.++.+++ +.+++
T Consensus 293 ~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~ 371 (644)
T 2z6h_A 293 NNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 371 (644)
T ss_dssp TCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHH
T ss_pred CCHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHH
Confidence 5 456667776 789999999998743 7899999999999997644 34566888999999999999875 79999
Q ss_pred HHHHHHHHHhcCC
Q 017402 357 NANNLIQTLSGNP 369 (372)
Q Consensus 357 ~a~~~L~~l~~~~ 369 (372)
.|.++|.++..+.
T Consensus 372 ~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 372 ATVGLIRNLALCP 384 (644)
T ss_dssp HHHHHHHHHTTSG
T ss_pred HHHHHHHHHccCH
Confidence 9999999987654
No 30
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.92 E-value=1.6e-25 Score=191.14 Aligned_cols=191 Identities=15% Similarity=0.227 Sum_probs=168.3
Q ss_pred CCHHHHHHHHhhcCCCh--hHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc-cc
Q 017402 131 GAVSAVLNCLKIHSDGF--TLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EV 206 (372)
Q Consensus 131 g~i~~L~~lL~~~~~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~ 206 (372)
-.++.++++|. ++++ +++..|+.+|.+++.+ ++++..|.+.|+||.|+++|++++.+++..|+++|.||+.. ++
T Consensus 8 ~~i~~lV~lL~--s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLE--ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCC--SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhC--CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 35899999999 6666 8999999999999965 77899999999999999999999999999999999999984 58
Q ss_pred chhhhccccchHHHHHHHhhc-CCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHh---h-------------
Q 017402 207 NKATIGDYPYAINALVSLLQN-GKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLAD---A------------- 269 (372)
Q Consensus 207 ~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~---~------------- 269 (372)
++..|.+ .|+||.|+++|++ ++. ++++.|+.+|+||+..++++..+++. ++++|+.++. +
T Consensus 86 nk~~I~~-~GaI~~Lv~lL~~~~~~-~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 86 NKLEVAE-LNGVPRLLQVLKQTRDL-ETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHH-TTHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHH-cCCHHHHHHHHccCCCH-HHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccccc
Confidence 9999998 7999999999986 455 89999999999999999999999874 7999988651 0
Q ss_pred ---h-HHHHHHHHHHHhC-CHhHHHHHHhccchHHHHHHHHhcC------ChhHHHhHHHHHHHHhcC
Q 017402 270 ---G-LERAVEVLSILVK-CKEGREEMMRVSGCVGVFVKMLKTG------SSRAVQCSLFTLSCLCCC 326 (372)
Q Consensus 270 ---~-~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L~~ll~~~------~~~~~~~a~~~L~~l~~~ 326 (372)
. .+++..+|+||+. ++++|+.+.+.+|+|+.|+.+++.. +.+.+++|+.+|+||++.
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1 5779999999987 6799999999788999999999763 557889999999999975
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=3.7e-24 Score=216.22 Aligned_cols=270 Identities=19% Similarity=0.210 Sum_probs=236.4
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKV 168 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~ 168 (372)
+.|+..|.++ .++++|..|+..|.+++. +++++..+.+.|+++.|+++|+ +.++.++..|+.+|.+|+.+ ++.+.
T Consensus 195 ~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~--~~~~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 195 SAIVRTMQNT-NDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLG--SPVDSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHC-CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 4577777754 478999999999999998 4668999999999999999999 78899999999999999987 56667
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhccc-ccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
.+.+.|+++.|+.+|++++..++..++.+|.+++.. ++++..+.. .|+++.|+.++++.+.......++.+|++|+.+
T Consensus 271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 777899999999999999999999999999999864 478888887 699999999999887646777899999999999
Q ss_pred CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402 248 PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323 (372)
Q Consensus 248 ~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 323 (372)
++++..+++.|+++.|+.++.++ .+.++.+|.+|+...... ....++++.|+.++.+.++.+++.|+.+|.+|
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999554 678999999999865331 11257899999999999999999999999999
Q ss_pred hcCCHHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHHHHHHhc
Q 017402 324 CCCSQEICGDSRKEGVLDICMGLLEDD--NEKVRRNANNLIQTLSG 367 (372)
Q Consensus 324 ~~~~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~L~~l~~ 367 (372)
+..+++.+..+.+.|+++.|+.++.+. .+.++..|.++|.+|..
T Consensus 427 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp TSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 998889999999999999999999873 34999999999999875
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=3.6e-24 Score=216.25 Aligned_cols=270 Identities=21% Similarity=0.250 Sum_probs=235.6
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc-CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
|.|+.+|.+. ++.+|..|+..|.+++.. ..++..+.+. |+++.|+++|++ +.+.+++..|+.+|.+|+.+++++.
T Consensus 153 p~Lv~lL~~~--d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~Ls~~~~~~~ 228 (780)
T 2z6g_A 153 PELTKLLNDE--DQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTSGTLHNLSHHREGLL 228 (780)
T ss_dssp HHHHHHHHCS--CHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCchhHH
Confidence 5678888754 889999999999999985 4577777754 899999999984 2488999999999999999988888
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS- 246 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~- 246 (372)
.+.+.|+++.|+.+|++++..++..|+++|.+++... +.+..+.. .|+++.|+.++.+.+. .++..++.+|.+++.
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~-~v~~~a~~aL~~La~~ 306 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNV-KFLAITTDCLQILAYG 306 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-cCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999875 45556666 6999999999998766 889999999999997
Q ss_pred CCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHH
Q 017402 247 FPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLS 321 (372)
Q Consensus 247 ~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 321 (372)
+++++..+++.|+++.|+.++.++ .+.++.+|.+|+.+...+..++. .|+++.|+.++.+.++.+++.|+++|.
T Consensus 307 ~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a~~~L~ 385 (780)
T 2z6g_A 307 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLR 385 (780)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGGTTCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHHHcCCchHHHHHHHHHHH
Confidence 567999999999999999999654 45689999999999999999998 799999999999989999999999999
Q ss_pred HHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 322 CLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 322 ~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
+++...+.. ....++++.|+.++.+.++++++.|+++|.+|..+.
T Consensus 386 ~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 386 NLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp HHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 999765431 122568999999999999999999999999997753
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=1.5e-23 Score=178.41 Aligned_cols=194 Identities=23% Similarity=0.289 Sum_probs=172.6
Q ss_pred ccCChHHHHHHHhcCChHHHHHHHHHHHHhccc-ccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-CCc
Q 017402 172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVV-EVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPE 249 (372)
Q Consensus 172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-~~~ 249 (372)
..|+.+.|+.+|++++.+++..|+++|.+++.. ++++..+.+ .|+++.|+++|++++. .++..|+++|.|++. +++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID-AGALPALVQLLSSPNE-QILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCCcH
Confidence 468899999999999999999999999999954 467777777 7999999999999877 999999999999996 557
Q ss_pred hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402 250 NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324 (372)
Q Consensus 250 ~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 324 (372)
++..+++.|+++.|+.+|+++ ++.++.+|.||+.. +..+..+.+ .|+++.|++++.++++.+++.|+.+|.+++
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 889999999999999999655 78899999999975 445556666 899999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 325 CCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
..+++.+..+.+.|+++.|+.+++++++++++.|.++|..|..+
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 98899999999999999999999999999999999999998753
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.6e-23 Score=201.68 Aligned_cols=274 Identities=15% Similarity=0.149 Sum_probs=225.7
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcCh-------------------------------------H-HHHHHhhcCC
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDS-------------------------------------A-SRRKLTESGA 132 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~-------------------------------------~-~~~~i~~~g~ 132 (372)
.|+.+++.. .+......++..|.|++...+ + ++..+.+.|+
T Consensus 380 ~Lv~llk~~-~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGv 458 (778)
T 3opb_A 380 ILLTMIKSQ-KMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTEL 458 (778)
T ss_dssp HHHHHHTTT-CCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHhCC-CCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcC
Confidence 477777652 366778889999998886322 1 5677889999
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChH---HHHHHHHHHHHhcccccchh
Q 017402 133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPD---CRAIAATIITSLAVVEVNKA 209 (372)
Q Consensus 133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~---~~~~a~~~L~~ls~~~~~~~ 209 (372)
++.|+.+++ +.++.+++.++++|.||+.++++|..+++.|+++.|+.+|.+++.. .+..|+.+|.+++...+...
T Consensus 459 Ip~Lv~Ll~--S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 459 ISFLKREMH--NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp HHHHHHHGG--GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999 7899999999999999999999999999999999999999887544 89999999999986655444
Q ss_pred hhcc--ccchHHHHHHHhhc-CCc-----------h-HHHHHHHHHHHhhcCCCc-----hhHHHHhc-CchHHHHHHHh
Q 017402 210 TIGD--YPYAINALVSLLQN-GKL-----------I-REKKEAATALYALTSFPE-----NRKRVVSC-GAVPILMRLAD 268 (372)
Q Consensus 210 ~i~~--~~g~i~~Lv~ll~~-~~~-----------~-~~~~~a~~aL~~L~~~~~-----~~~~i~~~-g~v~~L~~ll~ 268 (372)
.+.. ..|+|++|+++|.. ... + --+.+|+.||.||+..++ .+..+++. |+++.|..++.
T Consensus 537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence 4421 13899999999983 111 0 126799999999999873 47888885 99999999995
Q ss_pred hh----HHHHHHHHHHHhCCHhHH-HHHHhcc-----chHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhc-
Q 017402 269 AG----LERAVEVLSILVKCKEGR-EEMMRVS-----GCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE- 337 (372)
Q Consensus 269 ~~----~e~a~~~L~~L~~~~~~~-~~i~~~~-----g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~- 337 (372)
++ ++.|+.+++||+.+++++ +.+.... +.++.|+.++..++...++.|.++|.+++..++..+..+++.
T Consensus 617 s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~ 696 (778)
T 3opb_A 617 DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKK 696 (778)
T ss_dssp CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcc
Confidence 44 778999999999998886 3554311 248899999999999999999999999987778888888887
Q ss_pred ChhHHHHHHhhc--ccHHHHHHHHHHHHHHhc
Q 017402 338 GVLDICMGLLED--DNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 338 g~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~ 367 (372)
|+++.+++++++ ++++++..+..++.+|.+
T Consensus 697 ~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 697 ELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 799999999999 899999999999999986
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=4.6e-23 Score=175.50 Aligned_cols=191 Identities=21% Similarity=0.227 Sum_probs=170.3
Q ss_pred CchhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc
Q 017402 88 NPQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN 166 (372)
Q Consensus 88 ~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~ 166 (372)
.++.++.+|.+. +++++..|++.|.+++..+++++..+.+.|+++.|+++|+ +.+++++..|+++|.+++.+ +++
T Consensus 13 ~~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 13 ELPQMVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp CHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred hhHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcHH
Confidence 346688888765 8999999999999999888999999999999999999999 78999999999999999965 677
Q ss_pred cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 167 KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
+..+.+.|+++.|+.+|++++..++..|+++|.+++..+ +.+..+.+ .|+++.|+.++++++. .++..|+++|.||+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~-~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNE-QILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCH-HHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999755 44555666 7999999999998876 99999999999999
Q ss_pred CC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC
Q 017402 246 SF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC 284 (372)
Q Consensus 246 ~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~ 284 (372)
.. ++++..+++.|+++.|++++.++ ++.|+.+|.+|+.+
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 87 57888899999999999999654 78899999999863
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.9e-22 Score=193.73 Aligned_cols=271 Identities=15% Similarity=0.139 Sum_probs=221.5
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc-CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc---
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES-GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD--- 165 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~--- 165 (372)
+.++..|.++ +.+.+..|++.|..++. +++.|+.+++. |.++.|+++++. ..+..+.+.++.+|.||+...+
T Consensus 337 ~~~~~~L~~~--~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 337 EIFINAISRR--IVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHTTTC--CHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHhcC--CccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCcccc
Confidence 3455666654 45568999999999998 66789999875 779999999983 2677899999999999986421
Q ss_pred ------------------------------------ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchh
Q 017402 166 ------------------------------------NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKA 209 (372)
Q Consensus 166 ------------------------------------~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~ 209 (372)
++..+.+.|+++.|+.+++++++.++..++++|.+|+.+.++|.
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~ 492 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP 492 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 34567789999999999999999999999999999999999999
Q ss_pred hhccccchHHHHHHHhhcCCch--HHHHHHHHHHHhhcCCCchhHHHH--h-cCchHHHHHHHhh--h------------
Q 017402 210 TIGDYPYAINALVSLLQNGKLI--REKKEAATALYALTSFPENRKRVV--S-CGAVPILMRLADA--G------------ 270 (372)
Q Consensus 210 ~i~~~~g~i~~Lv~ll~~~~~~--~~~~~a~~aL~~L~~~~~~~~~i~--~-~g~v~~L~~ll~~--~------------ 270 (372)
.+++ .|+++.|+.++.+.... ..+..|+.+|.+|....+....+- . .|+|++|+.+|.. +
T Consensus 493 ~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 493 QLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9998 79999999999987651 389999999999986554333331 1 3899999999962 1
Q ss_pred ----HHHHHHHHHHHhCCH-----hHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHH-HHHHh----
Q 017402 271 ----LERAVEVLSILVKCK-----EGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEIC-GDSRK---- 336 (372)
Q Consensus 271 ----~e~a~~~L~~L~~~~-----~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~---- 336 (372)
.-.|+.+|.||+..+ +.|..++.+.|+++.|..++.+.++.+++.|+.++.|++.. ++.. +.+..
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENP 650 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCc
Confidence 236999999999975 34777888458999999999999999999999999999975 6654 34432
Q ss_pred --cChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 337 --EGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 337 --~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
.+.++.|+.++++++.++|++|.++|.++.
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 234889999999999999999999999985
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=1e-21 Score=174.75 Aligned_cols=221 Identities=19% Similarity=0.170 Sum_probs=181.9
Q ss_pred CChhHHHHHHHHHhcCCCCccccccccccCChHHHHH-HHhcCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHH
Q 017402 145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA-ALRFGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALV 222 (372)
Q Consensus 145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~-~L~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv 222 (372)
.+.+-+..|+..|.++..+.++...+.+.|+++.|+. +|++++++++..|+++|.+++.++ ..+..+.+ .|+++.|+
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~-~g~l~~Ll 130 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHH
Confidence 3456788999999999998888888999999999999 999999999999999999999866 56777777 79999999
Q ss_pred HHhhcCCchHHHHHHHHHHHhhcCCC-chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC-HhHHHHHHhccc
Q 017402 223 SLLQNGKLIREKKEAATALYALTSFP-ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC-KEGREEMMRVSG 296 (372)
Q Consensus 223 ~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~-~~~~~~i~~~~g 296 (372)
.+|++..+..+++.|+++|+|++.+. +....+++.|+++.|+.+|.++ +..++++|++|+.. ++.+..+++ .|
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g 209 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MG 209 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH-cC
Confidence 99997533489999999999999855 5677888999999999999665 67899999999875 556777777 89
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhc--ChhHH---HHHHhh-c-ccHHHHHHHHHHHHHHhc
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE--GVLDI---CMGLLE-D-DNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~~~~---l~~ll~-~-~~~~v~~~a~~~L~~l~~ 367 (372)
+++.|+.+|.+.++.+++.|+.+|.+|+...+......... ..... ..+-++ . .+.++.++|..++..+..
T Consensus 210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999998866555444332 22222 233333 2 367889999999987764
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=2.2e-21 Score=172.70 Aligned_cols=178 Identities=18% Similarity=0.185 Sum_probs=159.4
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHH-HHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLN-CLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRV 179 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~l 179 (372)
+.+.+..|+..|.+++. +.+++..|.+.|+++.|+. +|. +.+++++..|+++|.+++.+ +..+..+++.|+++.|
T Consensus 53 ~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~--s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~L 129 (296)
T 1xqr_A 53 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 56789999999999998 5569999999999999999 999 78999999999999999877 5678889999999999
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-CCchhHHHHh
Q 017402 180 VAALRFG-SPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPENRKRVVS 256 (372)
Q Consensus 180 v~~L~~~-~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~~~i~~ 256 (372)
+.+|+++ +..++..|+++|.+++.+. +....+.. .|+++.|+.+|++++. .++..|+++|++|+. +++.+..+++
T Consensus 130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~-~v~~~A~~aLs~L~~~~~~~~~~vv~ 207 (296)
T 1xqr_A 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQ-KLKVKSAFLLQNLLVGHPEHKGTLCS 207 (296)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 9999964 8899999999999999765 44556666 6999999999999877 999999999999987 4678899999
Q ss_pred cCchHHHHHHHhhh----HHHHHHHHHHHhCC
Q 017402 257 CGAVPILMRLADAG----LERAVEVLSILVKC 284 (372)
Q Consensus 257 ~g~v~~L~~ll~~~----~e~a~~~L~~L~~~ 284 (372)
.|+++.|+.+|.++ ++.++.+|.+|+..
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999654 88999999999987
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.78 E-value=1.1e-19 Score=133.77 Aligned_cols=73 Identities=33% Similarity=0.511 Sum_probs=67.5
Q ss_pred CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCCC
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPL 77 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 77 (372)
..++++|.||||+++|+|||+++|||+||+.||.+||.. ..+||.|+.++. ..++.||..+++.++.|+..+.
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~-~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLT-ESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCC-TTSSEECHHHHHHHHHHHHTTT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCC-hhhceECHHHHHHHHHHHHHhh
Confidence 357889999999999999999999999999999999984 678999999999 8899999999999999998753
No 40
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.78 E-value=1.3e-19 Score=129.55 Aligned_cols=71 Identities=34% Similarity=0.527 Sum_probs=66.1
Q ss_pred CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 75 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~ 75 (372)
..++++|.||||+++|+|||+++|||+||+.||.+|+.. ..+||.|+.++. ...+.+|..++++++.|...
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~-~~~l~pn~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLT-ESMLEPVPELKEQIQAWMRE 79 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCC-GGGCEECHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCC-hHhcchHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999985 678999999999 78999999999999999864
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.77 E-value=2.7e-19 Score=131.19 Aligned_cols=72 Identities=35% Similarity=0.516 Sum_probs=67.0
Q ss_pred CCCCCCccccCCcccCCCceecCCc-hHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSG-HTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP 76 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cg-h~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~ 76 (372)
..++++|.||||+++|+|||+++|| |+||+.||.+||.. ..+||.|++++. ...+.||..+++.++.|+..+
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~-~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT-MDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC-TTTSEECHHHHHHHHHHHHHS
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCC-hhhceEcHHHHHHHHHHHHHc
Confidence 4578999999999999999999999 99999999999986 678999999999 889999999999999998864
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.75 E-value=3.8e-19 Score=125.81 Aligned_cols=73 Identities=51% Similarity=1.010 Sum_probs=67.4
Q ss_pred CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP 76 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~ 76 (372)
..+++++.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+..+. ...+.+|..++++++.|...+
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~-~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL-HAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS-SCCCEECTTTHHHHHHHHHHS
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC-hhhCccCHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999999876789999999998 788999999999999998753
No 43
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=2.2e-16 Score=150.33 Aligned_cols=269 Identities=17% Similarity=0.179 Sum_probs=212.2
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccc--
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDN-- 166 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~-- 166 (372)
+.|...|.+. +-.+.|+.|+..|+.++++ ++..++ .++++.|+..|++...|.++...++.+|.++... ++.
T Consensus 24 ~~L~~Rl~~~-tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~ 98 (651)
T 3grl_A 24 QKLCDRVASS-TLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEV 98 (651)
T ss_dssp HHHHHHHHHC-CSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhhc-cchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccc
Confidence 5577788764 6788999999999999873 455554 5679999999997667899999999999885433 211
Q ss_pred ---------------cccc-cccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc--chhhhccccchHHHHHHHhhcC
Q 017402 167 ---------------KVGL-VAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV--NKATIGDYPYAINALVSLLQNG 228 (372)
Q Consensus 167 ---------------~~~i-~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~ 228 (372)
.+.+ .+.+.|+.|+.+|+..+..+|.++...|..|+.... +++.|....++|+.|+.+|.+.
T Consensus 99 ~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~ 178 (651)
T 3grl_A 99 EENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS 178 (651)
T ss_dssp ---------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS
T ss_pred cccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc
Confidence 1122 246889999999999999999999999999997763 5666775479999999999998
Q ss_pred CchHHHHHHHHHHHhhcCCCchhHHHHhc-CchHHHHHHHhhh--------HHHHHHHHHHHhCCH-hHHHHHHhccchH
Q 017402 229 KLIREKKEAATALYALTSFPENRKRVVSC-GAVPILMRLADAG--------LERAVEVLSILVKCK-EGREEMMRVSGCV 298 (372)
Q Consensus 229 ~~~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~L~~ll~~~--------~e~a~~~L~~L~~~~-~~~~~i~~~~g~i 298 (372)
++ .++..|+..|.+|+.++...++++.. |+++.|+.++... .+.|+.+|.||.++. .++..|.+ .|++
T Consensus 179 rE-~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE-t~~i 256 (651)
T 3grl_A 179 RE-VIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE-GSYI 256 (651)
T ss_dssp SH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCG
T ss_pred hH-HHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH-cCCH
Confidence 88 99999999999999988877777755 9999999999432 678999999999965 46777777 7999
Q ss_pred HHHHHHHhcCChh------HHH---hHHHHHHHHhcC------CHHHHHHHHhcChhHHHHHHhhcc--cHHHHHHHHHH
Q 017402 299 GVFVKMLKTGSSR------AVQ---CSLFTLSCLCCC------SQEICGDSRKEGVLDICMGLLEDD--NEKVRRNANNL 361 (372)
Q Consensus 299 ~~L~~ll~~~~~~------~~~---~a~~~L~~l~~~------~~~~~~~~~~~g~~~~l~~ll~~~--~~~v~~~a~~~ 361 (372)
+.|..++..+.+. ... .++.++..++.. .+.+++.+.+.|+++.|++++... ...++..|..+
T Consensus 257 ~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~t 336 (651)
T 3grl_A 257 QRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINT 336 (651)
T ss_dssp GGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHH
Confidence 9999998653221 112 356666666654 236788899999999999998865 67888888888
Q ss_pred HHHH
Q 017402 362 IQTL 365 (372)
Q Consensus 362 L~~l 365 (372)
+..+
T Consensus 337 la~~ 340 (651)
T 3grl_A 337 VSEV 340 (651)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8543
No 44
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.72 E-value=2e-18 Score=139.36 Aligned_cols=73 Identities=37% Similarity=0.599 Sum_probs=67.0
Q ss_pred CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP 76 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~ 76 (372)
..++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.+++ ...+.||..++++++.|+..+
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~-~~~L~pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT-QDQLIPNLAMKEVIDAFIQEN 173 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCEECHHHHHHHHHHHHHC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC-hhhCcchHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999999999999875457999999998 889999999999999998753
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.8e-18 Score=123.66 Aligned_cols=74 Identities=31% Similarity=0.550 Sum_probs=65.3
Q ss_pred CCCCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcC-----CCCCCC--CCCC-CCCCCCCCccHHHHHHHHHHh
Q 017402 3 TQFPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSG-----HRTCPI--TKLP-LPDQPSLIPNHALRSLISNFT 73 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~-----~~~CP~--c~~~-~~~~~~~~~n~~l~~~i~~~~ 73 (372)
+..+++|.||||+++|.|||+++ |||+||+.||.+||..+ ..+||. |+.. +. ..++.+|..++++++.|.
T Consensus 2 ~~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~-~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 2 SSGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR-KSDLIQDEALRRAIENHN 80 (94)
T ss_dssp CSCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC-GGGEEECHHHHHHHHHHH
T ss_pred CCCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC-HhhCcCCHHHHHHHHHHH
Confidence 45788999999999999999996 99999999999999753 468999 7766 77 789999999999999999
Q ss_pred cCCC
Q 017402 74 RTPL 77 (372)
Q Consensus 74 ~~~~ 77 (372)
....
T Consensus 81 ~~~~ 84 (94)
T 2yu4_A 81 KKRH 84 (94)
T ss_dssp TTCC
T ss_pred HHhc
Confidence 8743
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.67 E-value=5.7e-17 Score=118.46 Aligned_cols=73 Identities=29% Similarity=0.527 Sum_probs=65.2
Q ss_pred CCCCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402 3 TQFPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSG-HRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 75 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~ 75 (372)
..+++++.||||.++|.+|++++ |||+||+.||.+|+... ...||.||..+.....+.+|..++.+++.|...
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNE 82 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHH
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHH
Confidence 45788999999999999999999 99999999999999753 478999999974367899999999999999875
No 47
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=4.9e-17 Score=144.58 Aligned_cols=72 Identities=38% Similarity=0.604 Sum_probs=67.0
Q ss_pred CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP 76 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~ 76 (372)
.++++|.||||.++|.|||+++|||+||+.||.+|+..++.+||.|+.+++ ...+.||..++++++.|+..+
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~-~~~l~~n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT-QEQLIPNLAMKEVIDAFISEN 275 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC-GGGCEECHHHHHHHHHHHTTC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc-hhcCcccHHHHHHHHHHHHHC
Confidence 477899999999999999999999999999999999876667999999998 889999999999999999764
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.63 E-value=1.3e-14 Score=138.26 Aligned_cols=276 Identities=14% Similarity=0.116 Sum_probs=220.6
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChH-----------------HHHHHh-hcCCHHHHHHHHhhcCCChhHH
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSA-----------------SRRKLT-ESGAVSAVLNCLKIHSDGFTLQ 150 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~-----------------~~~~i~-~~g~i~~L~~lL~~~~~~~~~~ 150 (372)
.+.++..|+++.+|.+....++..|.++...+++ +.+.+. +.+.|+.|+.+|+ +.+..++
T Consensus 62 l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~--~~df~vR 139 (651)
T 3grl_A 62 MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE--EFDFHVR 139 (651)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT--CCCHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc--CccHHHH
Confidence 3779999999888889888999999876654332 333443 4588999999999 8899999
Q ss_pred HHHHHHHhcCCCC--ccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhc
Q 017402 151 EKALSLLLNLSLD--DDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN 227 (372)
Q Consensus 151 ~~a~~~L~~l~~~--~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~ 227 (372)
..++..|..|+.+ +..++.|.. .++++.|+.+|++....+|-.++.+|.+|+.++..-.+++...|+++.|+++++.
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence 9999999998876 336888885 6999999999999899999999999999999887777776657999999999987
Q ss_pred CCc---hHHHHHHHHHHHhhcCCC-chhHHHHhcCchHHHHHHHhhh----------HHH---HHHHHHHHhCC------
Q 017402 228 GKL---IREKKEAATALYALTSFP-ENRKRVVSCGAVPILMRLADAG----------LER---AVEVLSILVKC------ 284 (372)
Q Consensus 228 ~~~---~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~----------~e~---a~~~L~~L~~~------ 284 (372)
+.. ..+...++.+|.||...+ .|...+.|.|+++.|..+++.+ ..+ ++.++..|+..
T Consensus 220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~ 299 (651)
T 3grl_A 220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299 (651)
T ss_dssp HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 432 368889999999999855 5889999999999999998422 122 66777777764
Q ss_pred -HhHHHHHHhccchHHHHHHHHhcC--ChhHHHhHHHHHHHHhcCCHHHHHHHHhcC---------hhHHHHHHhhc-cc
Q 017402 285 -KEGREEMMRVSGCVGVFVKMLKTG--SSRAVQCSLFTLSCLCCCSQEICGDSRKEG---------VLDICMGLLED-DN 351 (372)
Q Consensus 285 -~~~~~~i~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g---------~~~~l~~ll~~-~~ 351 (372)
..++..+.+ .|++..|++++... +..++..|+.++..+..+++.++..+.+.. ++..|+.++.+ ..
T Consensus 300 t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 300 TSSCQKAMFQ-CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 245667777 79999999999764 677889999999999999999988887643 44445554544 46
Q ss_pred HHHHHHHHHHHHHHhc
Q 017402 352 EKVRRNANNLIQTLSG 367 (372)
Q Consensus 352 ~~v~~~a~~~L~~l~~ 367 (372)
..+|-+|..+++.+-.
T Consensus 379 ~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8889999999986543
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.61 E-value=2.4e-16 Score=121.77 Aligned_cols=70 Identities=16% Similarity=0.351 Sum_probs=62.9
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 75 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~ 75 (372)
++++.||||.+.|.+|++++|||+||+.|+.+|+..+...||.||..+.....+.+|..+..+++.|...
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 4678999999999999999999999999999999866679999999998337899999999999888753
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.56 E-value=9.2e-16 Score=121.91 Aligned_cols=70 Identities=24% Similarity=0.422 Sum_probs=62.5
Q ss_pred CCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR 74 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~ 74 (372)
+++++.||||.++|.+|++++|||+||+.||.+|+..+...||.||..+.....+.+|..++.+++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 3467899999999999999999999999999999987667899999999933389999999999998874
No 51
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.55 E-value=6.4e-16 Score=114.36 Aligned_cols=70 Identities=20% Similarity=0.404 Sum_probs=62.1
Q ss_pred CCCCccccCCcccCCCcee-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402 5 FPDDFKCPISLEIMSDPVI-LSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 75 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~ 75 (372)
+.+++.||||++.|.+|++ ++|||+||+.||.+|+......||.||.++. ...+.++..+..+++.+...
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ-LRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC-HHHhHhhHHHHHHHHHHHHH
Confidence 4467899999999999999 9999999999999999876578999999998 88888898888887777655
No 52
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.7e-15 Score=100.47 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=48.5
Q ss_pred CCCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 2 ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 2 ~~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
...+++++.||||++.+.+|++++|||+||+.|+.+|+..+...||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 45678899999999999999999999999999999999766778999999887
No 53
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-16 Score=112.43 Aligned_cols=64 Identities=27% Similarity=0.567 Sum_probs=55.1
Q ss_pred CCCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcC------CCCCCCCCCCCCCCCCCCccHHHH
Q 017402 2 ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSG------HRTCPITKLPLPDQPSLIPNHALR 66 (372)
Q Consensus 2 ~~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~------~~~CP~c~~~~~~~~~~~~n~~l~ 66 (372)
.+.+++++.||||++.|.+|++++|||+||+.|+.+|+... ...||.||..+. ..++.+|..++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~-~~~l~~n~~l~ 75 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS-FEHLQANQHLA 75 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC-SSGGGTCSSSC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC-HhhCCcCHHHH
Confidence 45678899999999999999999999999999999999753 568999999998 66777776544
No 54
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.52 E-value=3.4e-15 Score=110.46 Aligned_cols=68 Identities=22% Similarity=0.486 Sum_probs=61.7
Q ss_pred CCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402 6 PDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 75 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~ 75 (372)
++++.||||.+.|.+|+++ +|||+||+.|+.+|+.. ...||.||..+. ..++.+|..++++++.+...
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~l~~n~~l~~~i~~~~~~ 88 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVT-EPDLKNNRILDELVKSLNFA 88 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC-GGGCEECHHHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCC-hhhCCcCHHHHHHHHHHHHH
Confidence 3568999999999999998 89999999999999985 578999999998 78899999999999999775
No 55
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.51 E-value=4e-15 Score=113.72 Aligned_cols=73 Identities=22% Similarity=0.463 Sum_probs=64.4
Q ss_pred CCCCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402 1 MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR 74 (372)
Q Consensus 1 ~~~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~ 74 (372)
|...+++++.||||++.+.+|++++|||+||+.|+.+|+..+...||.||.++. ...+.++..+++.+..+..
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~l~~~i~~l~v 83 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL-ENQLFPDNFAKREILSLMV 83 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC-GGGCEECHHHHHHHHTSEE
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC-HHhcccCHHHHHHHcccee
Confidence 346688899999999999999999999999999999999876668999999998 7778899999888877654
No 56
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.51 E-value=7.8e-15 Score=102.12 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=49.9
Q ss_pred CCCCCCccccCCcccCCCceecC-CchHhhHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCcc
Q 017402 3 TQFPDDFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSG-HRTCPITKLPLPDQPSLIPN 62 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~~~~~~~~n 62 (372)
..+++++.||||++.|.+|++++ |||+||+.||.+|+... ...||.||..+.....+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 45778899999999999999999 99999999999999753 36899999986634444443
No 57
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=2.2e-15 Score=108.40 Aligned_cols=63 Identities=32% Similarity=0.662 Sum_probs=54.6
Q ss_pred CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcC-----CCCCCCCCCCCCCCCCCCccHHHH
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSG-----HRTCPITKLPLPDQPSLIPNHALR 66 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~-----~~~CP~c~~~~~~~~~~~~n~~l~ 66 (372)
+.+.+++.||||.+.+.+|++++|||+||+.|+.+|+... ...||.||..+. ...+.+|..++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~-~~~~~~n~~l~ 81 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP-FGNLKPNLHVA 81 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC-TTCCEECSCCC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC-HHhCCcCHHHH
Confidence 4567889999999999999999999999999999999863 568999999998 77777776544
No 58
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.8e-15 Score=125.75 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=63.4
Q ss_pred CCCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcC-CCCCCC--CCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402 4 QFPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSG-HRTCPI--TKLPLPDQPSLIPNHALRSLISNFTRT 75 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~-~~~CP~--c~~~~~~~~~~~~n~~l~~~i~~~~~~ 75 (372)
....+++||||+++|++||+. .|||+||+.||.+||..+ ...||+ |++.+. ..++.+|..++++++.|...
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~-~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS-MRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC-GGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc-hhhCCcCHHHHHHHHHHHHH
Confidence 356789999999999999985 899999999999999763 468999 999998 88999999999999988763
No 59
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.49 E-value=9.4e-15 Score=109.89 Aligned_cols=68 Identities=16% Similarity=0.441 Sum_probs=60.0
Q ss_pred CCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCC----CCCccHHHHHHHHHHhc
Q 017402 5 FPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQP----SLIPNHALRSLISNFTR 74 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~----~~~~n~~l~~~i~~~~~ 74 (372)
+++++.||||.+.|.+|+++ +|||+||+.|+.+|+.. ...||.|+..+. .. .+.+|..+..+++.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVH-KTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSC-SSCGGGGEEECHHHHHHHHHHST
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccc-ccCcccccCcCHHHHHHHHHHhh
Confidence 46789999999999999997 99999999999999986 478999999988 44 67889999998887764
No 60
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.3e-14 Score=98.45 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=50.0
Q ss_pred CCCCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 017402 3 TQFPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n 62 (372)
+.+++++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.||..+. ..++..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVH-QTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCC-SSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccC-ccccccc
Confidence 4567889999999999999997 89999999999999976 678999999988 5555443
No 61
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.47 E-value=3.7e-15 Score=113.52 Aligned_cols=70 Identities=21% Similarity=0.426 Sum_probs=59.0
Q ss_pred CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCC------CCCCCccHHHHHHHHHHh
Q 017402 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPD------QPSLIPNHALRSLISNFT 73 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~------~~~~~~n~~l~~~i~~~~ 73 (372)
...+++.||||.+.+.+|++++|||+||+.|+.+|+..+...||.||..+.. ...+..|..+..++..+.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 4556799999999999999999999999999999998767899999998861 145667788888777765
No 62
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.47 E-value=9.6e-15 Score=118.70 Aligned_cols=71 Identities=27% Similarity=0.509 Sum_probs=61.9
Q ss_pred CCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402 5 FPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 75 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~ 75 (372)
+.+++.||||++.|.+|+++ +|||+||+.|+.+|+..+...||.||..+.....+.+|..+..++..+...
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 44567999999999999987 999999999999999976788999999986467789999999999988654
No 63
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.4e-15 Score=107.33 Aligned_cols=63 Identities=25% Similarity=0.660 Sum_probs=54.5
Q ss_pred CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhc-----CCCCCCCCCCCCCCCCCCCccHHHH
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS-----GHRTCPITKLPLPDQPSLIPNHALR 66 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~-----~~~~CP~c~~~~~~~~~~~~n~~l~ 66 (372)
..+++.+.||||.+.+.+|++++|||+||+.|+..|+.. +...||.||..+. ..++.+|..++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~-~~~~~~n~~l~ 81 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ-PENIRPNRHVA 81 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC-SSSCCCSCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC-HHhcCccHHHH
Confidence 457788999999999999999999999999999999975 3678999999998 77777776544
No 64
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.2e-14 Score=98.34 Aligned_cols=55 Identities=27% Similarity=0.643 Sum_probs=48.2
Q ss_pred CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhc--CCCCCCCCCCCCCCCCC
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCPITKLPLPDQPS 58 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~--~~~~CP~c~~~~~~~~~ 58 (372)
..+++++.||||++.+.+|++++|||+||+.|+.+|+.. +...||.||..+. ..+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~-~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR-KNA 71 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC-CCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC-ccc
Confidence 457788999999999999999999999999999999973 4568999999887 443
No 65
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.46 E-value=1e-14 Score=111.29 Aligned_cols=67 Identities=22% Similarity=0.403 Sum_probs=61.0
Q ss_pred CCCCccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcC
Q 017402 5 FPDDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRT 75 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~ 75 (372)
+.+++.||||.++|.+|+++ +|||+||+.||.+|+. ..||.|+..+. ..++.+|..+..+++.+...
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~-~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW-IQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS-CSSCCCCHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc-cccccccHHHHHHHHHHHHH
Confidence 34679999999999999999 9999999999999986 67999999998 88999999999999888764
No 66
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.44 E-value=2.6e-14 Score=112.37 Aligned_cols=64 Identities=22% Similarity=0.474 Sum_probs=51.7
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHh
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFT 73 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~ 73 (372)
++++.||||.+.|.+||+++|||+||..|+.+|+.. ..+||.||.++. . ...+..+...+..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~-~--~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIK-S--KTYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCC-C--EEECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCC-C--CCCccchhHHHHHHH
Confidence 356889999999999999999999999999999975 678999999887 2 234555555555544
No 67
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.7e-14 Score=94.19 Aligned_cols=47 Identities=30% Similarity=0.717 Sum_probs=42.4
Q ss_pred CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhc--CCCCCCCC
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCPIT 49 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~--~~~~CP~c 49 (372)
..+++++.||||++.+.+|++++|||+||+.|+.+|+.. +...||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 457789999999999999999999999999999999975 45689987
No 68
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=98.40 Aligned_cols=60 Identities=20% Similarity=0.327 Sum_probs=51.5
Q ss_pred CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHH
Q 017402 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALR 66 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~ 66 (372)
...+.+.||||++.+.+|++++|||+||+.|+.+|+.. ...||.||..+. ..+.+|..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~--~~~~~~~~l~ 70 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG--GIFNPAKELM 70 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC--SCCEECHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc--ccCCcHHHHH
Confidence 45678999999999999999999999999999999975 678999999886 5667775443
No 69
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=6.4e-14 Score=94.91 Aligned_cols=55 Identities=24% Similarity=0.454 Sum_probs=47.9
Q ss_pred CCccccCCcc-cCCCc----eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 017402 7 DDFKCPISLE-IMSDP----VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62 (372)
Q Consensus 7 ~~~~C~ic~~-~~~~P----v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n 62 (372)
+++.||||++ .+.+| ++++|||+||+.|+.+|+..+...||.||..+. ..++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR-KSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS-SCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc-cccceee
Confidence 5789999999 99999 468999999999999999876778999999998 6666554
No 70
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=2.9e-14 Score=108.11 Aligned_cols=68 Identities=24% Similarity=0.516 Sum_probs=56.8
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHhcC--CCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSG--HRTCPITKLPLPDQPSLIPNHALRSLISNFTR 74 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~--~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~ 74 (372)
.+.+.||||.+.+.+|++++|||+||+.|+.+|+... ...||.|+..+. ...+.+|..+..+++.+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT-KRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC-TTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC-HhhcCccHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999853 358999999998 7778777666666655543
No 71
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.40 E-value=3.9e-14 Score=107.98 Aligned_cols=69 Identities=28% Similarity=0.461 Sum_probs=56.6
Q ss_pred CCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCC-CccHHHHHHHHHHhc
Q 017402 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSL-IPNHALRSLISNFTR 74 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~-~~n~~l~~~i~~~~~ 74 (372)
+++++.||||.+.+.+|++++|||+||+.|+.+|+..+...||.||..+. ..++ .++..+..++..+..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~~l~~~i~~l~v 89 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF-PTDLESPVKSFLNILNSLMV 89 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCBCCCHHHHHHHHHCEE
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC-HhhccccHHHHHHHHHHhcC
Confidence 34578999999999999999999999999999999876778999999988 5444 456666666655543
No 72
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.39 E-value=7.8e-14 Score=113.92 Aligned_cols=73 Identities=22% Similarity=0.463 Sum_probs=63.8
Q ss_pred CCCCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhc
Q 017402 1 MATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTR 74 (372)
Q Consensus 1 ~~~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~ 74 (372)
|...+++++.||||.++|.+||+++|||+||+.|+.+|+..+..+||.||..+. ...+.++..+.+.+..+..
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL-ENQLFPDNFAKREILSLMV 83 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC-GGGCEECHHHHHHHHTSEE
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc-hhhhhhhHHHHHHHhhccc
Confidence 345788999999999999999999999999999999999876669999999998 7778889888887776543
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.38 E-value=7e-14 Score=92.44 Aligned_cols=54 Identities=22% Similarity=0.432 Sum_probs=48.0
Q ss_pred CccccCCcccCCCceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccH
Q 017402 8 DFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNH 63 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~ 63 (372)
.|.||||+++|.|||+. +|||+||+.||++|+.. +.+||.+++++. ..++.+++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~-~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLS-IEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCC-GGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCC-hhhcEECc
Confidence 58999999999999999 89999999999999986 356999999998 77887764
No 74
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.38 E-value=1.9e-14 Score=112.93 Aligned_cols=72 Identities=18% Similarity=0.346 Sum_probs=58.3
Q ss_pred CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCC--------CCCCCccHHHHHHHHHHhc
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPD--------QPSLIPNHALRSLISNFTR 74 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~--------~~~~~~n~~l~~~i~~~~~ 74 (372)
+.+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.||.++.. ...+.++..+++.+..+..
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v 105 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPA 105 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEE
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccccc
Confidence 45778999999999999999999999999999999998766789999986531 1234577878777765443
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.38 E-value=3.4e-11 Score=101.82 Aligned_cols=185 Identities=22% Similarity=0.176 Sum_probs=152.7
Q ss_pred hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402 129 ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK 208 (372)
Q Consensus 129 ~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~ 208 (372)
..+.++.|+..|. +.+..++..|+..|..+.. .+.++.|+.+|.+++..++..++.+|..+.
T Consensus 17 ~~~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------ 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------ 78 (211)
T ss_dssp CGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC------
T ss_pred CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC------
Confidence 3467999999999 8899999999999987642 467899999999999999999999998874
Q ss_pred hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC
Q 017402 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC 284 (372)
Q Consensus 209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~ 284 (372)
. .++++.|+.++.+++. .++..|+.+|..+.. .+.++.|+.++.++ +..++.+|..+..
T Consensus 79 ----~-~~~~~~L~~~l~~~~~-~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 79 ----D-ERAVEPLIKALKDEDG-WVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp ----C-GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred ----C-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence 2 4689999999988777 999999999998853 35788999999554 5678888887743
Q ss_pred HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402 285 KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQT 364 (372)
Q Consensus 285 ~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~ 364 (372)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..+++++++.||..|..+|..
T Consensus 142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4589999999988999999999999998842 3367889999999999999999999998
Q ss_pred HhcCC
Q 017402 365 LSGNP 369 (372)
Q Consensus 365 l~~~~ 369 (372)
+..+.
T Consensus 201 ~~~~~ 205 (211)
T 3ltm_A 201 HKSFN 205 (211)
T ss_dssp -----
T ss_pred cCCCC
Confidence 87654
No 76
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.37 E-value=5.2e-11 Score=105.37 Aligned_cols=219 Identities=15% Similarity=0.104 Sum_probs=152.5
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
.+.++..|.++ ++.+|..|++.|.++.. .+.++.|+.+|. +.++.++..|+.+|..+...+....
T Consensus 25 i~~L~~~L~~~--~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~--d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 25 DDELFRLLDDH--NSLKRISSARVLQLRGG-----------QDAVRLAIEFCS--DKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HHHHHHHTTCS--SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHT--CSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHccCC-----------chHHHHHHHHHc--CCCHHHHHHHHHHHHHhccccccch
Confidence 46788899865 88999999999998762 235788999998 7889999999999999864322111
Q ss_pred cccccCChHHHH-HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 169 GLVAEGAVSRVV-AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 169 ~i~~~g~i~~lv-~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
..++.|. .++++++..++..++++|.++...... .. ..+++.|+.++++++. .++..|+.+|.++..
T Consensus 90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~-~~~~~~L~~~l~d~~~-~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAFDKST-NVRRATAFAISVIND- 157 (280)
T ss_dssp -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTTCSCH-HHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----cc-HHHHHHHHHHhhCCCH-HHHHHHHHHHHhcCC-
Confidence 1233343 245668899999999999998643211 12 3678999999988776 899999999988753
Q ss_pred CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402 248 PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323 (372)
Q Consensus 248 ~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 323 (372)
.++++.|+.++.++ +..++.+|..+... ....++.|+.++.+.++.++..|+.+|..+
T Consensus 158 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 158 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 24788999988554 56677888776421 134677888888878888888888888776
Q ss_pred hcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 324 CCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 324 ~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
.. ..+++.|+.++++.+ +|..|..+|..+
T Consensus 220 ~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 220 KD-----------KRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp TC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred CC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 52 224444555444422 445555554443
No 77
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.1e-13 Score=89.28 Aligned_cols=48 Identities=31% Similarity=0.764 Sum_probs=42.6
Q ss_pred CCCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhc--CCCCCCCC
Q 017402 2 ATQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDS--GHRTCPIT 49 (372)
Q Consensus 2 ~~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~--~~~~CP~c 49 (372)
.+.+.+++.||||++.+.+|++++|||+||+.|+.+|+.. ....||.|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3457788999999999999999999999999999999864 46789987
No 78
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7e-13 Score=95.77 Aligned_cols=52 Identities=27% Similarity=0.575 Sum_probs=46.9
Q ss_pred CCCCCCccccCCcccCCC----ceecCCchHhhHHHHHHHHhcC--CCCCCCCCCCCC
Q 017402 3 TQFPDDFKCPISLEIMSD----PVILSSGHTFDRASIQRWLDSG--HRTCPITKLPLP 54 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~----Pv~~~cgh~~c~~ci~~~~~~~--~~~CP~c~~~~~ 54 (372)
..+.+.+.||||.+.|.+ |++++|||+||+.|+.+|+... ...||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 457788999999999999 9999999999999999999864 468999999877
No 79
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.34 E-value=3.6e-13 Score=93.02 Aligned_cols=57 Identities=23% Similarity=0.424 Sum_probs=49.3
Q ss_pred CCCCCccccCCcccCCCc-------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 017402 4 QFPDDFKCPISLEIMSDP-------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~P-------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n 62 (372)
...+++.||||++.+.+| ++++|||+||+.|+.+|+.. ..+||.||..+. ..++.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN-HKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCC-CCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccC-hhheeec
Confidence 456789999999999998 88999999999999999986 568999999988 6665543
No 80
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=3.7e-13 Score=92.83 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=45.0
Q ss_pred CCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 4 QFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
...+++.|+||++.+.+|++++|||+||+.|+.+|+.. ...||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhC
Confidence 34567899999999999999999999999999999976 478999999876
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.33 E-value=8.1e-11 Score=98.72 Aligned_cols=183 Identities=22% Similarity=0.185 Sum_probs=152.3
Q ss_pred hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402 129 ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK 208 (372)
Q Consensus 129 ~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~ 208 (372)
..+..+.+++.|. +.++.++..|+.+|..+.. .+.++.|+..|.+++..++..++.+|..+.
T Consensus 12 ~~~~~~~~i~~L~--~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------ 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------ 73 (201)
T ss_dssp CHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------
T ss_pred CCcchHHHHHHhc--CCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC------
Confidence 3466888999999 8999999999999987642 367899999999999999999999998874
Q ss_pred hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC
Q 017402 209 ATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC 284 (372)
Q Consensus 209 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~ 284 (372)
. .++++.|+.++.+.+. .++..|+++|.++.. .++++.|+.++.++ +..++.+|..+..
T Consensus 74 ----~-~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 74 ----D-ERAVEPLIKALKDEDG-WVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp ----C-GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred ----C-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 2 3689999999998776 999999999998753 24788899988554 5678888877753
Q ss_pred HhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402 285 KEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQT 364 (372)
Q Consensus 285 ~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~ 364 (372)
.+.++.|..++.+.++.++..|+.+|..+.. ..+++.|..++++.++.+|..|..+|..
T Consensus 137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5689999999998999999999999999832 2368888899999999999999999988
Q ss_pred Hhc
Q 017402 365 LSG 367 (372)
Q Consensus 365 l~~ 367 (372)
+..
T Consensus 196 l~~ 198 (201)
T 3ltj_A 196 HKS 198 (201)
T ss_dssp CC-
T ss_pred HHh
Confidence 764
No 82
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.32 E-value=9.1e-13 Score=91.82 Aligned_cols=51 Identities=24% Similarity=0.464 Sum_probs=44.4
Q ss_pred CCCCCccccCCcccC--CCceecC--CchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 4 QFPDDFKCPISLEIM--SDPVILS--SGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~--~~Pv~~~--cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.+++++.||||++.+ .++++.+ |||+||+.|+.++|..+...||.||+++.
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 477899999999988 4566665 99999999999999766789999999988
No 83
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9.9e-13 Score=90.22 Aligned_cols=52 Identities=23% Similarity=0.441 Sum_probs=46.3
Q ss_pred CCCCCCCccccCCcccCCCc-------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 2 ATQFPDDFKCPISLEIMSDP-------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 2 ~~~~~~~~~C~ic~~~~~~P-------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.....+.+.|+||++.+.+| ++++|||.||..|+.+|+.. ..+||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 34567889999999999988 88999999999999999986 678999999876
No 84
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.29 E-value=2.7e-10 Score=96.26 Aligned_cols=180 Identities=19% Similarity=0.172 Sum_probs=147.7
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
.+.++..|.+. ++.+|..|+..|..+.. .+.++.|+++|. +.+..++..++.+|..+.
T Consensus 21 ~~~L~~~L~~~--~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~--~~~~~vr~~a~~aL~~~~------- 78 (211)
T 3ltm_A 21 VEMYIKNLQDD--SYYVRRAAAYALGKIGD-----------ERAVEPLIKALK--DEDAWVRRAAADALGQIG------- 78 (211)
T ss_dssp HHHHHHHTTCS--SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT--CSCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHc--CCCHHHHHHHHHHHHhhC-------
Confidence 36788888865 89999999999988653 357899999999 789999999999998874
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
..+.++.|+.+|.++++.++..++.+|..+.. .+.++.|+.++.+++. .++..|+.+|.++..
T Consensus 79 ---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 79 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDW-FVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC--
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCC--
Confidence 24678999999999999999999999998742 3689999999988777 999999999999853
Q ss_pred chhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402 249 ENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324 (372)
Q Consensus 249 ~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 324 (372)
...++.|+.+++++ +..++.+|..+.. ..+++.|..++.+.++.++..|..+|..+.
T Consensus 142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 24788899999554 5678888888743 457888999999999999999999999887
Q ss_pred cC
Q 017402 325 CC 326 (372)
Q Consensus 325 ~~ 326 (372)
..
T Consensus 203 ~~ 204 (211)
T 3ltm_A 203 SF 204 (211)
T ss_dssp --
T ss_pred CC
Confidence 65
No 85
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.28 E-value=3.6e-10 Score=94.68 Aligned_cols=177 Identities=20% Similarity=0.172 Sum_probs=147.7
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
+.+++.|.++ ++.+|..|+..|..+.. .+.++.|+++|. +.++.++..++.+|..+..
T Consensus 17 ~~~i~~L~~~--~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 17 EMYIKNLQDD--SYYVRRAAAYALGKIGD-----------ERAVEPLIKALK--DEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc--CCCHHHHHHHHHHHHhhCC-------
Confidence 6789999876 89999999999987653 246899999998 7899999999999988742
Q ss_pred ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCc
Q 017402 170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPE 249 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~ 249 (372)
.+.++.|+..|.++++.++..|+++|..+.. ..+++.|+.++.+++. .++..|+.+|.++..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDW-FVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHTC---
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCC---
Confidence 3678999999999999999999999998742 3589999999988776 999999999998853
Q ss_pred hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402 250 NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC 324 (372)
Q Consensus 250 ~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 324 (372)
.+.++.|+.++.++ +..++.+|..+.. ..+++.|..++.+.++.++..|..+|..+-
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 35788899999554 5678888887732 457889999998899999999999998764
No 86
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.26 E-value=1.3e-10 Score=118.83 Aligned_cols=267 Identities=12% Similarity=0.126 Sum_probs=184.9
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHH--Hh--hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRK--LT--ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--i~--~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 165 (372)
+.+++.+.++ ++..|..++..|..++...+..-.. +. -...++.++.++. +.+.+++..|+.+|.++.....
T Consensus 131 ~~L~~~l~~~--~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~--~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 131 PKLCSLLDSE--DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK--HSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp HHHHHHHSCS--SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTT--CSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhccc
Confidence 5566677654 7789999999999999753322110 00 1235666667777 6789999999999998875432
Q ss_pred ccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
....-.-.+.++.+..++.+++.+++..++++|..++........- ...++++.++..+++.++ .++..|+.++..++
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~-~l~~l~~~l~~~~~~~~~-~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP-HMHNIVEYMLQRTQDQDE-NVALEACEFWLTLA 284 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG-GHHHHHHHHHHHHTCSSH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHccCCcH-HHHHHHHHHHHHHh
Confidence 2111111357888888888899999999999999998654322111 113688899999888766 89999999999999
Q ss_pred CCCchhHHHHh--cCchHHHHHHH-----------hh-----------h----HHHHHHHHHHHhCCHhHHHHHHhccch
Q 017402 246 SFPENRKRVVS--CGAVPILMRLA-----------DA-----------G----LERAVEVLSILVKCKEGREEMMRVSGC 297 (372)
Q Consensus 246 ~~~~~~~~i~~--~g~v~~L~~ll-----------~~-----------~----~e~a~~~L~~L~~~~~~~~~i~~~~g~ 297 (372)
.....+..+.. ...++.++..+ .+ . +..+..+|..|+.... ..+.. ..
T Consensus 285 ~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~--~l 360 (852)
T 4fdd_A 285 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP--HI 360 (852)
T ss_dssp TSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH--HH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH--HH
Confidence 76644432211 13456666655 11 1 3346666776665322 12222 36
Q ss_pred HHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 298 VGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 298 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
++.+...+.+.+...|+.|+.+|..++....+...... .++++.++.++++.++.||..|+++|..+..
T Consensus 361 ~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 77788888888899999999999999987554333222 4589999999999999999999999987654
No 87
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.25 E-value=1.2e-12 Score=88.31 Aligned_cols=53 Identities=25% Similarity=0.464 Sum_probs=46.0
Q ss_pred CCccccCCcccCCCc-------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc
Q 017402 7 DDFKCPISLEIMSDP-------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP 61 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P-------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~ 61 (372)
+++.||||++.+.+| ++++|||.||..|+.+|+.. ..+||.||..+. ..++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN-HKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCT-TTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCC-ccceee
Confidence 578999999999988 78999999999999999986 678999999988 555443
No 88
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.23 E-value=3.8e-12 Score=89.49 Aligned_cols=57 Identities=25% Similarity=0.533 Sum_probs=47.0
Q ss_pred CCCCCccccCCcccCCCc---eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 017402 4 QFPDDFKCPISLEIMSDP---VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPN 62 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~P---v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n 62 (372)
...+++.|+||++.|.+| ++++|||.||+.|+.+|+.. ..+||.||..+. ...+.++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLT-GQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCC-CSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccC-CcccCCC
Confidence 456788999999999877 45699999999999999975 578999999988 5555443
No 89
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.20 E-value=7.9e-10 Score=97.67 Aligned_cols=197 Identities=14% Similarity=0.056 Sum_probs=149.2
Q ss_pred HhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc
Q 017402 127 LTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV 206 (372)
Q Consensus 127 i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~ 206 (372)
+.+.+.++.|+..|. +.++.++..|+.+|.++. ..+.++.|+.+|.++++.++..|+++|..+.....
T Consensus 19 ~~~~~~i~~L~~~L~--~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLD--DHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHTSCHHHHHHHTT--CSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHhhHHHHHHHHH--cCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 445678999999999 789999999999999875 24578999999999999999999999998863221
Q ss_pred chhhhccccchHHHHHHH-hhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHH
Q 017402 207 NKATIGDYPYAINALVSL-LQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSIL 281 (372)
Q Consensus 207 ~~~~i~~~~g~i~~Lv~l-l~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L 281 (372)
. + ...++.|... +.+++. .++..|+++|.++...... ....+++.|+.++.++ +..++.+|.++
T Consensus 87 ~---~---~~l~~~L~~~~~~d~~~-~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 87 C---E---DNVFNILNNMALNDKSA-CVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp T---H---HHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred c---c---hHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 1 1 1345555533 444544 8999999999998742211 1124578888888554 45566777665
Q ss_pred hCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHH
Q 017402 282 VKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNL 361 (372)
Q Consensus 282 ~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~ 361 (372)
.. .+.++.|+.++.+.++.++..|+.+|..+...++ .+++.|+.++++.++.+|..|..+
T Consensus 156 ~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~a 215 (280)
T 1oyz_A 156 ND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIG 215 (280)
T ss_dssp --------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 43 3589999999999999999999999998854333 357888999999999999999999
Q ss_pred HHHHh
Q 017402 362 IQTLS 366 (372)
Q Consensus 362 L~~l~ 366 (372)
|..+.
T Consensus 216 L~~~~ 220 (280)
T 1oyz_A 216 LSYRK 220 (280)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 98765
No 90
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=4e-12 Score=82.92 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=41.1
Q ss_pred CCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
-.+++.|+||++.+.+|++++|||+||+.|+.+ ....||.||..+.
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSSCCSSSS
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCCCCcCCcEee
Confidence 357899999999999999999999999999977 3567999999877
No 91
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.17 E-value=1.1e-11 Score=84.69 Aligned_cols=48 Identities=35% Similarity=0.660 Sum_probs=42.5
Q ss_pred CCCccccCCcccCCCc-eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDP-VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~P-v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.++..||||++.+.+| +.++|||.||..|+.+|+.. ..+||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhH
Confidence 3567899999999997 67899999999999999976 578999998876
No 92
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.16 E-value=1.1e-11 Score=80.79 Aligned_cols=48 Identities=29% Similarity=0.585 Sum_probs=41.9
Q ss_pred CCCccccCCcccCCC----ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSD----PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~----Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.++..|+||++.+.+ ++.++|||.||..|+.+|+... .+||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 356789999999876 7789999999999999999874 78999998764
No 93
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.16 E-value=1.1e-10 Score=119.43 Aligned_cols=265 Identities=13% Similarity=0.098 Sum_probs=179.8
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
+++.+.+ .++++|..|++.|..+....+. .+.. .+.++.++.++. +++.+++..++.+|..++........
T Consensus 179 l~~~l~~--~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~--d~~~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 179 FLQFFKH--SSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAG--DEEPEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HTTTTTC--SSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHhcC--CCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 4444443 3789999999999988864331 1111 246778888887 78899999999999998765221111
Q ss_pred ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhcc-ccchHHHHHHHhh----------cC----------
Q 017402 170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGD-YPYAINALVSLLQ----------NG---------- 228 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~----------~~---------- 228 (372)
-.-.+.++.++..+++.+.+++..|+.++..++.....+..+.. ....++.|+..+. .+
T Consensus 252 ~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~ 331 (852)
T 4fdd_A 252 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT 331 (852)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence 01135788888888888999999999999999865433322211 1257788887772 11
Q ss_pred -CchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHH
Q 017402 229 -KLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVK 303 (372)
Q Consensus 229 -~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ 303 (372)
..-.++..|..+|..++.... ..++. ..++.+..++.+. ++.++.+|++++........-. ..+.++.|+.
T Consensus 332 ~~~~~vr~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~ 407 (852)
T 4fdd_A 332 ISDWNLRKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQ 407 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHH
Confidence 011468888888888875322 11221 3456666666443 7789999999998654322211 2468899999
Q ss_pred HHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 304 MLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 304 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
.+.+.++.++..|+.+|..++...+.......-.++++.|+..+.+.++.+|.+|.++|..+.+
T Consensus 408 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 408 CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 9998999999999999999886422211111123578889999988999999999999987753
No 94
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.16 E-value=1e-11 Score=80.88 Aligned_cols=49 Identities=33% Similarity=0.765 Sum_probs=42.9
Q ss_pred CCCCccccCCcccCCC---ceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSD---PVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~---Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+.++..|+||++.+.+ +++++ |||.||..|+.+|+.. ..+||.||..+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 5678899999999988 78887 9999999999999975 678999998764
No 95
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.14 E-value=6.8e-10 Score=110.38 Aligned_cols=189 Identities=10% Similarity=0.086 Sum_probs=146.5
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHH-HHhhcCCchHHHHHHHHHHHhhcCC--Cch
Q 017402 174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALV-SLLQNGKLIREKKEAATALYALTSF--PEN 250 (372)
Q Consensus 174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv-~ll~~~~~~~~~~~a~~aL~~L~~~--~~~ 250 (372)
+.|.++++.|++++++.|..|+++|.+|+.+.+.+..+.. .|+|..++ .+|.+.+. +++..|+++|+||+.. .+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~~~-~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDNNI-DSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCSCH-HHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCCCH-HHHHHHHHHHHHHHhhcCchH
Confidence 4566788889999999999999999999987777777766 57777655 56666666 9999999999999975 468
Q ss_pred hHHHHhcCchHHHHHHHhhh-------------------------HHHHHHHHHHHhCCH-hHHHHHHhccchHHHHHHH
Q 017402 251 RKRVVSCGAVPILMRLADAG-------------------------LERAVEVLSILVKCK-EGREEMMRVSGCVGVFVKM 304 (372)
Q Consensus 251 ~~~i~~~g~v~~L~~ll~~~-------------------------~e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L~~l 304 (372)
+..+++.|++++|+.++... .+.++.+|++||... +....+.. .++++.|+..
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l~~~ 190 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRLLFR 190 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHHHHH
Confidence 88999999999999998321 235778899998744 44456666 7899999998
Q ss_pred Hhc---CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhH---HHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 305 LKT---GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLD---ICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 305 l~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~---~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
+.. .+..+...|+.+|..++..+++..+.+.+.|... .++.+. ..++..+..++++|.++.
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence 854 2457889999999999999999989998887433 333333 344455778889988764
No 96
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.2e-11 Score=83.77 Aligned_cols=50 Identities=24% Similarity=0.582 Sum_probs=43.5
Q ss_pred CCCCCccccCCcccCCCceec---CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 4 QFPDDFKCPISLEIMSDPVIL---SSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~Pv~~---~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
...++..|+||++.+.+|..+ +|||.||..|+.+|+.. ..+||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVL 63 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccc
Confidence 456788999999999887644 99999999999999986 458999999887
No 97
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=3e-11 Score=82.65 Aligned_cols=49 Identities=29% Similarity=0.624 Sum_probs=42.0
Q ss_pred CCCCccccCCcccCC---CceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMS---DPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~---~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..++..|+||++.+. .++.++|||.||..|+.+|+.. ..+||.||..+.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIE 62 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCcccc
Confidence 456789999999884 4577899999999999999986 557999999877
No 98
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.12 E-value=2.1e-11 Score=88.18 Aligned_cols=49 Identities=24% Similarity=0.587 Sum_probs=43.0
Q ss_pred CCCCccccCCcccCCC---ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSD---PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~---Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..++..|+||++.|.+ +++++|||.||..||.+|+.. ..+||.||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCC
Confidence 4467889999999887 788999999999999999975 568999998876
No 99
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=7.9e-12 Score=85.87 Aligned_cols=50 Identities=36% Similarity=0.780 Sum_probs=44.9
Q ss_pred CCCCCCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..+.+.+.|+||++.+.+ ++++|||.||..|+.+|+. ...+||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTT
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCccc
Confidence 456778999999999999 9999999999999999987 4778999998887
No 100
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=3.2e-11 Score=83.98 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=43.1
Q ss_pred CCCCccccCCcccCCCc---eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSDP---VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~P---v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..++..|+||++.+.++ +.++|||.||..|+.+|+.. ..+||.||..+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCC
Confidence 34678899999999888 67899999999999999986 568999999876
No 101
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.08 E-value=6.5e-11 Score=89.71 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=41.3
Q ss_pred CCccccCCcccCCCce------------------ecCCchHhhHHHHHHHHhc----CCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPV------------------ILSSGHTFDRASIQRWLDS----GHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv------------------~~~cgh~~c~~ci~~~~~~----~~~~CP~c~~~~~ 54 (372)
.+..|+||++.|.+|+ .++|||.||..||.+|+.. ...+||.||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4569999999998775 6789999999999999963 3568999999887
No 102
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=2.8e-11 Score=94.53 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=47.1
Q ss_pred CCCCccccCCcccCCCc-------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc
Q 017402 5 FPDDFKCPISLEIMSDP-------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP 61 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~P-------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~ 61 (372)
.++++.||||++.|.+| ++++|||+||..||.+|+.. ..+||.|+..+. ...+.+
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~-~~~l~~ 65 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN-HKRYHP 65 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCT-TTCEEE
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCc-cccccc
Confidence 45789999999999999 89999999999999999985 568999999988 554433
No 103
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.06 E-value=2.2e-09 Score=101.42 Aligned_cols=267 Identities=13% Similarity=0.114 Sum_probs=176.6
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcC-hHHHHHHhhcCCHHHHHHHHhhcCC--ChhHHHHHHHHHhcCCCC-cc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRD-SASRRKLTESGAVSAVLNCLKIHSD--GFTLQEKALSLLLNLSLD-DD 165 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~--~~~~~~~a~~~L~~l~~~-~~ 165 (372)
|.+++.+.+++.++..|..|+..|..++... ++.-.... ...++.++..|. +. +..++..|+.++.++... ++
T Consensus 131 ~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~--~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 131 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMR--KEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHS--TTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5566677653216788999999999999743 21111111 236777888887 44 789999999999986432 11
Q ss_pred cc-ccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch--hhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402 166 NK-VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK--ATIGDYPYAINALVSLLQNGKLIREKKEAATALY 242 (372)
Q Consensus 166 ~~-~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~--~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 242 (372)
+. ......-.++.+...+.+++.+++..++.+|..++...... ..+. .++++.++..+++.++ .++..|+..+.
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~-~v~~~a~~~l~ 284 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDID-EVALQGIEFWS 284 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT--TTHHHHHHHHHHCSSH-HHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCch-HHHHHHHHHHH
Confidence 10 00011113556666666788999999999999998654321 2222 1688888888887776 89999999988
Q ss_pred hhcCCCc------------------hhHHHHh---cCchHHHHHHHhh-------h----HHHHHHHHHHHhCCHhHHHH
Q 017402 243 ALTSFPE------------------NRKRVVS---CGAVPILMRLADA-------G----LERAVEVLSILVKCKEGREE 290 (372)
Q Consensus 243 ~L~~~~~------------------~~~~i~~---~g~v~~L~~ll~~-------~----~e~a~~~L~~L~~~~~~~~~ 290 (372)
.++.... ....+++ ...+|.+++.+.. . +..+..+|..++..-. +.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~ 362 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD 362 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TT
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence 8875320 0111111 2345666666621 1 5567777777776322 12
Q ss_pred HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 291 MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 291 i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
+.. ..++.+...+.+.+...++.|+.+|..++.+.. +.-...+ ..+++.++..+.+.++.||..|+++|..+..
T Consensus 363 ~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 363 IVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 222 467777778888888999999999999997532 2111111 4689999999999999999999999987764
No 104
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.01 E-value=4e-09 Score=102.84 Aligned_cols=256 Identities=12% Similarity=0.018 Sum_probs=180.6
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccc
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL 170 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 170 (372)
.+...+.+. ++.+|..+++.|..++..-. . .......++.+..+++ +.+++++..++.+|..+...-.. . .
T Consensus 328 ~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~--~-~~~~~~l~p~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~-~-~ 398 (588)
T 1b3u_A 328 CIKELVSDA--NQHVKSALASVIMGLSPILG--K-DNTIEHLLPLFLAQLK--DECPEVRLNIISNLDCVNEVIGI-R-Q 398 (588)
T ss_dssp HHHHHHTCS--CHHHHHHHHTTGGGGHHHHC--H-HHHHHHTHHHHHHHHT--CSCHHHHHHHHTTCHHHHHHSCH-H-H
T ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHHHHhh--H-hHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHHHHhcCH-H-H
Confidence 344455443 78899999999988875311 1 1112347888899998 78899999999888776532111 0 1
Q ss_pred cccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCch
Q 017402 171 VAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPEN 250 (372)
Q Consensus 171 ~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 250 (372)
.....++.+..++++.+..+|..++.+|..++..-... ... ...++.++.++.+.+. .++..|+.+|..++..-..
T Consensus 399 ~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~-~~l~~~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 399 LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFD-EKLNSLCMAWLVDHVY-AIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCC-HHHHHHHHHGGGCSSH-HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHH-HHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhCc
Confidence 12457888888888888999999999999987532211 222 4688999999988776 8999999999998753222
Q ss_pred hHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402 251 RKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC 326 (372)
Q Consensus 251 ~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 326 (372)
. ......+|.|+.++.+. +..++.++..++..-. ...+. ...++.|...+.+.++.++..++.+|..++..
T Consensus 475 ~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~~~~~--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 475 E--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-QDITT--KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp H--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-HHHHH--HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred h--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-HHHHH--HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 1 12234667777666443 5667888888876322 22222 34788999999888899999999999999864
Q ss_pred CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 327 SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 327 ~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
-.. ......+++.|..++.+.+.++|..|..+|..+.+
T Consensus 550 ~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 550 LDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp SCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred hch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 222 12234577888888888999999999999988764
No 105
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.00 E-value=3.8e-11 Score=83.12 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=40.1
Q ss_pred CCCccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.+++.|+||++.+.+|++++|||. ||..|+.+| ..||.||..+.
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCcc
Confidence 356889999999999999999999 999999988 67999999876
No 106
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.99 E-value=1.2e-08 Score=99.35 Aligned_cols=247 Identities=16% Similarity=0.113 Sum_probs=166.5
Q ss_pred CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402 101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV 180 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv 180 (372)
.++.+|..|...|.+++...+.. . ...-.++.+..+.. +.+...+..++.+|..++..-... .....++.+.
T Consensus 99 ~~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~--~~~~~~R~~a~~~l~~~~~~~~~~---~~~~l~~~l~ 170 (588)
T 1b3u_A 99 EETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAG--GDWFTSRTSACGLFSVCYPRVSSA---VKAELRQYFR 170 (588)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHT--CSSHHHHHHHGGGHHHHTTTSCHH---HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHH
Confidence 37889999999999999754421 1 22234666666666 677889999999998876552211 1345678888
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCch
Q 017402 181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAV 260 (372)
Q Consensus 181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v 260 (372)
.++.++++.+|..++.+|..++..-.... . . ...+|.|..++.+++. .++..|+.+|..++..-.. .......+
T Consensus 171 ~l~~d~~~~VR~~a~~~l~~l~~~~~~~~-~-~-~~l~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~~~ 244 (588)
T 1b3u_A 171 NLCSDDTPMVRRAAASKLGEFAKVLELDN-V-K-SEIIPMFSNLASDEQD-SVRLLAVEACVNIAQLLPQ--EDLEALVM 244 (588)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHTSCHHH-H-H-HTHHHHHHHHHTCSCH-HHHTTHHHHHHHHHHHSCH--HHHHHHTH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcHHh-H-H-HHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHhCCH--HHHHHHHH
Confidence 88888999999999999999975432221 1 2 3689999999988776 8999999999988753221 11223466
Q ss_pred HHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHH
Q 017402 261 PILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSR 335 (372)
Q Consensus 261 ~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~ 335 (372)
+.+..++++. +..++.+|..++..... ..+ . ...++.+..++.+.++.++..|+.+|..++...+ +.+....
T Consensus 245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EIT-K-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHH-H-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccc-h-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 7777777543 66788888888763211 112 2 3578999999998899999999999999886432 2111111
Q ss_pred hcChhHHHHHHhhcccHHHHHHHHHHHHH
Q 017402 336 KEGVLDICMGLLEDDNEKVRRNANNLIQT 364 (372)
Q Consensus 336 ~~g~~~~l~~ll~~~~~~v~~~a~~~L~~ 364 (372)
-..+++.+..++++.++.+|..+.++|..
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~ 350 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMG 350 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 23355555556666666666665555443
No 107
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.98 E-value=2.3e-10 Score=113.39 Aligned_cols=72 Identities=36% Similarity=0.605 Sum_probs=66.7
Q ss_pred CCCCCCccccCCcccCCCceecCCc-hHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhcCC
Q 017402 3 TQFPDDFKCPISLEIMSDPVILSSG-HTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTP 76 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~~~cg-h~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~ 76 (372)
..+|++|.|||..++|+|||+++.| +||.|.+|++|+.. ..+||.+|++++ ...+.||+.++..|+.|+..+
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~-~~~liPN~~Lk~~I~~w~~~~ 958 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLK-LEDVTPNEELRQKILCFKKQK 958 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC-GGGCEECHHHHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCC-cccccccHHHHHHHHHHHHHH
Confidence 4689999999999999999999997 69999999999986 668999999999 889999999999999999863
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.98 E-value=2.1e-09 Score=106.88 Aligned_cols=187 Identities=18% Similarity=0.085 Sum_probs=140.8
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH-HHhcCChHHHHHHHHHHHHhcccc--cchh
Q 017402 133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA-ALRFGSPDCRAIAATIITSLAVVE--VNKA 209 (372)
Q Consensus 133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~-~L~~~~~~~~~~a~~~L~~ls~~~--~~~~ 209 (372)
|.++++.|+ +.+++.|..|+.+|.+|+.++..+..+...|++..++. +|.+.+.+++..|+++|.||+... +.+.
T Consensus 36 i~Pll~~L~--S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 36 ILPVLKDLK--SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp THHHHHHHS--SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 455667788 78999999999999999998888888889999887654 678889999999999999999764 4556
Q ss_pred hhccccchHHHHHHHhhcCCc--------------------hHHHHHHHHHHHhhcCC-CchhHHHHhcCchHHHHHHHh
Q 017402 210 TIGDYPYAINALVSLLQNGKL--------------------IREKKEAATALYALTSF-PENRKRVVSCGAVPILMRLAD 268 (372)
Q Consensus 210 ~i~~~~g~i~~Lv~ll~~~~~--------------------~~~~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~ 268 (372)
.+.. .|++++|..+++.... ..+..+++.+|++||.. ++....+.+.|+++.|+..|.
T Consensus 114 ~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 6666 6999999999863110 02445678899999974 456778888899999999883
Q ss_pred hh-------HHHHHHHHHHHhCCHh-HHHHHHhccch---HHHHHHHHhcCChhHHHhHHHHHHHHh
Q 017402 269 AG-------LERAVEVLSILVKCKE-GREEMMRVSGC---VGVFVKMLKTGSSRAVQCSLFTLSCLC 324 (372)
Q Consensus 269 ~~-------~e~a~~~L~~L~~~~~-~~~~i~~~~g~---i~~L~~ll~~~~~~~~~~a~~~L~~l~ 324 (372)
+. ...++..|.+|+.+.. ..+.+.. .|. +..+..+ ...+...+..++++|+++.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 22 5668889999998644 4455555 343 3333333 3445556788999999974
No 109
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.93 E-value=3.5e-10 Score=102.00 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=43.9
Q ss_pred CCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
....|+||.+.+.+|+.++|||.||..|+.+|+......||.||.++.
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 347899999999999999999999999999999855778999999887
No 110
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.93 E-value=1.3e-08 Score=99.54 Aligned_cols=253 Identities=14% Similarity=0.073 Sum_probs=173.3
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
.++++.++.+. +.+.|.-+...+..++..+++.. .-.+..+.+-|. +.++.++..|+++|.++.. ++.
T Consensus 51 ~~~vi~l~~s~--~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~--~~n~~ir~~AL~~L~~i~~-~~~-- 118 (591)
T 2vgl_B 51 FPDVVNCMQTD--NLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCE--DPNPLIRALAVRTMGCIRV-DKI-- 118 (591)
T ss_dssp HHHHHHTTSSS--CHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSS--SSSHHHHHHHHHHHHTCCS-GGG--
T ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcC--CCCHHHHHHHHHHHHcCCh-HHH--
Confidence 35677766544 78888888888888887555432 224566666777 7889999999999999962 221
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
....++.+.++|.+.++.+|..|+.++..+.... .+.+.. .+.++.|..+|.+.+. .++..|+.+|..++...
T Consensus 119 ---~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~-~~~~~~l~~lL~d~d~-~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 119 ---TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVED-QGFLDSLRDLIADSNP-MVVANAVAALSEISESH 191 (591)
T ss_dssp ---HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHH-HHHHHHHHHTTSCSCH-HHHHHHHHHHHHHTTSC
T ss_pred ---HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC--hhhccc-ccHHHHHHHHhCCCCh-hHHHHHHHHHHHHHhhC
Confidence 2345678999999999999999999999997643 223333 4789999999987766 99999999999999865
Q ss_pred chh-HHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402 249 ENR-KRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323 (372)
Q Consensus 249 ~~~-~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 323 (372)
... ..-...+.+..|+..+.+. +-..+.++..++..+... . ...++.+..++++.++.++..|+.++..+
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~---~--~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE---A--QSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH---H--HHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH---H--HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 322 1111223456667666443 445666666666432211 1 23566777777788889999999999998
Q ss_pred hcC---CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 324 CCC---SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 324 ~~~---~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
... +++..+.+. ..+.+.|+.++. .++++|..|...|..+..
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp CCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence 642 344433332 234566666654 678888888888876543
No 111
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.91 E-value=7.1e-08 Score=94.38 Aligned_cols=257 Identities=10% Similarity=0.082 Sum_probs=172.2
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc-c
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK-V 168 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~-~ 168 (372)
+.+...|.+. ++.+|..|+.++.++...+++ .+.+.+.++.+..+|. +.++.++..|+.+|..++.+.... .
T Consensus 124 ~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~--d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 124 EPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIA--DSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTS--CSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHcCCC--ChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhC--CCChhHHHHHHHHHHHHHhhCCCccc
Confidence 4466677654 899999999999999986654 2334578899999998 889999999999999998764322 1
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC--
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-- 246 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-- 246 (372)
.-...+.+..|+..+...++-.+.....++..+...++. . . ...++.+..++++.++ .++..|++++..+..
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--~--~-~~~l~~l~~~l~~~~~-~V~~ea~~~i~~l~~~~ 270 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR--E--A-QSICERVTPRLSHANS-AVVLSAVKVLMKFLELL 270 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--H--H-HHHHHHHTTCSCSSTT-HHHHHHHHHHHHSCCSC
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH--H--H-HHHHHHHHHHHcCCCh-HHHHHHHHHHHHHhhcc
Confidence 112245677888888888888888888888887643221 1 1 3678888888888777 999999999999874
Q ss_pred --CCchhHHHHhcCchHHHHHHHhhh---HHHHHHHHHHHhCC----------------H---hHHHHHHh------ccc
Q 017402 247 --FPENRKRVVSCGAVPILMRLADAG---LERAVEVLSILVKC----------------K---EGREEMMR------VSG 296 (372)
Q Consensus 247 --~~~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~L~~L~~~----------------~---~~~~~i~~------~~g 296 (372)
+++....+. ..+.+.|+.+++++ +-.++..|..+... . .-|....+ +..
T Consensus 271 ~~~~~~~~~~~-~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~ 349 (591)
T 2vgl_B 271 PKDSDYYNMLL-KKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQA 349 (591)
T ss_dssp CBTTBSHHHHH-HHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSS
T ss_pred CCCHHHHHHHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChh
Confidence 233333332 23556677666433 33455555555420 0 01111111 122
Q ss_pred ----hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 297 ----CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 297 ----~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
.++.|..++.+.+...+..++.++..++...+.... .+++.|+.++.+.++.++..+...++.+
T Consensus 350 nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 350 NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 345555666667888999999999999877654332 3567777777776666666665555443
No 112
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=4.2e-10 Score=79.32 Aligned_cols=47 Identities=19% Similarity=0.476 Sum_probs=39.9
Q ss_pred CCccccCCcccCCC--------------ceec-CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSD--------------PVIL-SSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~--------------Pv~~-~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
++..|+||++.|.+ ++++ +|||.|+..||.+|+.. ..+||.||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcc
Confidence 56789999999977 4455 59999999999999986 468999998876
No 113
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=3.9e-10 Score=78.27 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=38.9
Q ss_pred CCCccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
++++.|+||++.+.+|++++|||. ||..|+.+ ...||.||.++.
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVIT 67 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceec
Confidence 346789999999999999999999 99999964 367999999887
No 114
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.83 E-value=1.4e-09 Score=72.67 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=42.5
Q ss_pred CCCccccCCcccCCCceec--CCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVIL--SSGHT-FDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~--~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+++..|+||++...+++.+ +|||. ||..|+.+|+.. ...||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 4567899999999999987 99999 899999999975 567999999876
No 115
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.81 E-value=5.5e-10 Score=87.09 Aligned_cols=54 Identities=24% Similarity=0.479 Sum_probs=46.2
Q ss_pred CCCccccCCcccCCCc-------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc
Q 017402 6 PDDFKCPISLEIMSDP-------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIP 61 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~P-------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~ 61 (372)
++.+.|+||++.+.+| +.++|||.||..|+.+|+.. ..+||.||..+. ..++.+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN-HKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCC-GGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCC-hhccee
Confidence 4678899999999887 88999999999999999986 568999999888 555443
No 116
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.79 E-value=2.7e-09 Score=78.82 Aligned_cols=47 Identities=23% Similarity=0.426 Sum_probs=40.3
Q ss_pred CCccccCCcccCCCc------------------eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDP------------------VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P------------------v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
++..|+||++.|.+| +.++|||.|+..||.+|+.. +.+||.||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 456899999999876 34789999999999999986 678999998765
No 117
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.77 E-value=2.5e-09 Score=71.25 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=41.7
Q ss_pred CCccccCCcccCCCceec--CCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVIL--SSGHT-FDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~--~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
....|+||++..++++++ +|||. ||..|..+|+.. ...||.||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 456899999999999987 99998 999999999975 478999999876
No 118
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.76 E-value=7.7e-07 Score=87.44 Aligned_cols=252 Identities=15% Similarity=0.101 Sum_probs=169.5
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
..+.+..+.+. +.+.|.-+.-.+..++..+++... -.+..+.+-|. +.++.++..|+++|.++... +
T Consensus 72 ~~~vik~~~s~--~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~--~~n~~vr~lAL~~L~~i~~~-~--- 138 (618)
T 1w63_A 72 QLECLKLIASQ--KFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLN--HSTQFVQGLALCTLGCMGSS-E--- 138 (618)
T ss_dssp HHHHHHHHHSS--SHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHS--CSSSHHHHHHHHHHHHHCCH-H---
T ss_pred HHHHHHHHcCC--chHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcC--CCCHhHHHHHHHHHHhcCCH-H---
Confidence 35677777654 677777777788888876653222 13566777777 78899999999999999732 1
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
+ ....++.+.++|++.++.+|..|+.++.++..... +. . .+.++.+..++.+.+. .++..|+.+|..++..+
T Consensus 139 -~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~-v--~~~~~~l~~lL~D~d~-~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 139 -M-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--EL-M--EMFLPATKNLLNEKNH-GVLHTSVVLLTEMCERS 210 (618)
T ss_dssp -H-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GG-G--GGGGGGTTTSTTCCCH-HHHHHHHHHHHHHCCSH
T ss_pred -H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HH-H--HHHHHHHHHHhCCCCH-hHHHHHHHHHHHHHHhC
Confidence 2 24568889999999999999999999999986432 22 2 2678888888887766 89999999999998754
Q ss_pred ch-hHHHHhcCchHHHHHHHhh-----------------h--HHHHHHHHHHHhCCHhH-HH-------H----------
Q 017402 249 EN-RKRVVSCGAVPILMRLADA-----------------G--LERAVEVLSILVKCKEG-RE-------E---------- 290 (372)
Q Consensus 249 ~~-~~~i~~~g~v~~L~~ll~~-----------------~--~e~a~~~L~~L~~~~~~-~~-------~---------- 290 (372)
.. ...+. ..++.++.+|.. + +-.++.+|..++..+.. .. .
T Consensus 211 ~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 211 PDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKN 288 (618)
T ss_dssp HHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSST
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccc
Confidence 32 12221 466777766632 1 33455555555543211 00 0
Q ss_pred ------------HHh-------ccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhccc
Q 017402 291 ------------MMR-------VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDN 351 (372)
Q Consensus 291 ------------i~~-------~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~ 351 (372)
+.. ...++..|..++.+.++.++..|+.+|..++...++.. + .....++..+.+.+
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~----~-~~~~~i~~~l~d~d 363 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV----Q-RHRSTIVDCLKDLD 363 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH----G-GGHHHHHHGGGSSC
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH----H-HHHHHHHHHccCCC
Confidence 000 01256777777877788888888888888876544321 1 24556777777778
Q ss_pred HHHHHHHHHHHHHHhcC
Q 017402 352 EKVRRNANNLIQTLSGN 368 (372)
Q Consensus 352 ~~v~~~a~~~L~~l~~~ 368 (372)
..+|+.|..+|..+...
T Consensus 364 ~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 364 VSIKRRAMELSFALVNG 380 (618)
T ss_dssp HHHHHHHHHHHHHHCCS
T ss_pred hhHHHHHHHHHHHHccc
Confidence 88888888888766543
No 119
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=3.7e-09 Score=76.85 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=39.6
Q ss_pred CCCccccCCcccCCCceec---CCchHhhHHHHHHHHhc----C---CCCCCC--CCCC
Q 017402 6 PDDFKCPISLEIMSDPVIL---SSGHTFDRASIQRWLDS----G---HRTCPI--TKLP 52 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~---~cgh~~c~~ci~~~~~~----~---~~~CP~--c~~~ 52 (372)
.+.+.||||.+.+.+|+++ +|||.||+.|+.+|+.. + ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4578999999999999765 69999999999999963 2 247999 9887
No 120
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.68 E-value=3e-07 Score=93.92 Aligned_cols=267 Identities=13% Similarity=0.125 Sum_probs=171.3
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHH-HHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSAS-RRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVG 169 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 169 (372)
+...+.+...+.++|..|++.+..++..-..+ .........++.+...+. +.+.+++..++.+|..+... +..-..
T Consensus 177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~ 254 (876)
T 1qgr_A 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMET 254 (876)
T ss_dssp HHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445443225789999999999987532222 111111124666667666 67889999999999987754 221112
Q ss_pred ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccc----------------h---hhhc-cccchHHHHHHHhhcC-
Q 017402 170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVN----------------K---ATIG-DYPYAINALVSLLQNG- 228 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~----------------~---~~i~-~~~g~i~~Lv~ll~~~- 228 (372)
......++.++..+.+.+..++..++.++..++..... + ..+. .....++.++..+...
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~ 334 (876)
T 1qgr_A 255 YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334 (876)
T ss_dssp HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccc
Confidence 22336788888888888899999999998888754200 0 0000 0125677788887532
Q ss_pred -----CchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHh--HHHHHHhccch
Q 017402 229 -----KLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKE--GREEMMRVSGC 297 (372)
Q Consensus 229 -----~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~--~~~~i~~~~g~ 297 (372)
++..++..|..+|..++..-. ..++. ..++.+...+.+. ++.++.++..++.... ...... ...
T Consensus 335 ~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~ 409 (876)
T 1qgr_A 335 ENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQA 409 (876)
T ss_dssp SSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHH
Confidence 123688888899888875321 11111 2344444455333 6789999999987532 222333 347
Q ss_pred HHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHH--HHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 298 VGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEIC--GDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 298 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
++.++..+.+.++.++..|+.+|..++...+... .... ..+++.++..+.+. +++|..|.++|..+..
T Consensus 410 l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 8999999988899999999999999987644310 1111 24677888888774 8999999999987653
No 121
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.68 E-value=1.8e-09 Score=75.49 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=39.3
Q ss_pred CCCccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+++..|+||++.+.+|+.++|||. ||..|+.+|+ .||.||..+.
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~ 60 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVE 60 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCC
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhh
Confidence 356789999999999999999999 9999998763 7999999887
No 122
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.67 E-value=3.9e-07 Score=92.94 Aligned_cols=258 Identities=12% Similarity=0.155 Sum_probs=167.0
Q ss_pred CChHHHHHHHHHHHHHhhcCh-HHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc--ccccccCChH
Q 017402 101 SPLESKLESLTQLTKLSKRDS-ASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK--VGLVAEGAVS 177 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~i~~~g~i~ 177 (372)
.+...|..|+..+..++.... +.-..... ..++.|+..+. +.++.++..++.+|..++..-... ..-.-...++
T Consensus 381 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~ 457 (861)
T 2bpt_A 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN--DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457 (861)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHH
T ss_pred CChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 368899999999999997532 22122222 46788888888 788999999999999887541110 0001245678
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcccccc--hhhhc-cccchHHHHHHHhhcCCc-hHHHHHHHHHHHhhcCCC-chhH
Q 017402 178 RVVAALRFGSPDCRAIAATIITSLAVVEVN--KATIG-DYPYAINALVSLLQNGKL-IREKKEAATALYALTSFP-ENRK 252 (372)
Q Consensus 178 ~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~--~~~i~-~~~g~i~~Lv~ll~~~~~-~~~~~~a~~aL~~L~~~~-~~~~ 252 (372)
.++..+++. +.++..++++|.+++..-.. ...+. ....+++.|+.++.+.+. ..++..++.+|..++... +...
T Consensus 458 ~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~ 536 (861)
T 2bpt_A 458 ACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536 (861)
T ss_dssp HHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhH
Confidence 888888665 88999999999998754220 11121 113678889999985432 378999999999987633 2222
Q ss_pred HHHhcCchHHHHHHHhh---------------h----HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhcCCh-h
Q 017402 253 RVVSCGAVPILMRLADA---------------G----LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKTGSS-R 311 (372)
Q Consensus 253 ~i~~~g~v~~L~~ll~~---------------~----~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~~~~-~ 311 (372)
..+. ..++.++..+.. . +..++.+|.+++..-.. .+.. ....++.+...+...+. .
T Consensus 537 ~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~ 613 (861)
T 2bpt_A 537 ETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGLFFRLLEKKDSAF 613 (861)
T ss_dssp HHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred HHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHccCCCCc
Confidence 2222 356667666632 1 23567777777652211 1111 12467778888877666 8
Q ss_pred HHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 312 AVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 312 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
+++.++.++..++....+....... .+++.++..+.+.+.++|..|..++..+.
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 8999998888887542221111222 27888888888778889999988887554
No 123
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.67 E-value=1e-06 Score=90.04 Aligned_cols=268 Identities=13% Similarity=0.121 Sum_probs=174.3
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcC-hHHHHHHhh--cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-cc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRD-SASRRKLTE--SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DD 165 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~ 165 (372)
|.+++.+.+++.++.+|..++..|..++..- ++ .+.. ...++.+...+.+...+.+++..++.+|.++... +.
T Consensus 131 ~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 131 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5566666653216788999999999998742 21 1221 2456667777762212678999999999887643 11
Q ss_pred c-cccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccc--hhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402 166 N-KVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVN--KATIGDYPYAINALVSLLQNGKLIREKKEAATALY 242 (372)
Q Consensus 166 ~-~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~--~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 242 (372)
+ .........++.+...+.+.+.+++..++..|..+...... ...+. ..+++.++..+.+.++ .++..|+..+.
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~-~v~~~al~~l~ 284 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDID-EVALQGIEFWS 284 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT--TTHHHHHHHHHTCSSH-HHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhcCCch-HHHHHHHHHHH
Confidence 1 11111123566677777777899999999999998864422 12222 2678888888877666 89999999888
Q ss_pred hhcCCCc-------------------hhHHH--HhcCchHHHHHHHh-------hh----HHHHHHHHHHHhCCHhHHHH
Q 017402 243 ALTSFPE-------------------NRKRV--VSCGAVPILMRLAD-------AG----LERAVEVLSILVKCKEGREE 290 (372)
Q Consensus 243 ~L~~~~~-------------------~~~~i--~~~g~v~~L~~ll~-------~~----~e~a~~~L~~L~~~~~~~~~ 290 (372)
+++.... ....+ .-...++.++..+. +. +..+..+|..++..-. ..
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~ 362 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--Hh
Confidence 8875310 00000 00234666777762 11 5567777777765322 11
Q ss_pred HHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 291 MMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 291 i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
+. ...++.+...+.+.+..+++.|+.+|..++.... +...... .++++.++..+.+.++.+|..|.++|..+...
T Consensus 363 ~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 363 IV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 22 2356667777777888999999999999987643 3322322 34899999999999999999999999877653
No 124
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=3e-08 Score=69.10 Aligned_cols=50 Identities=24% Similarity=0.412 Sum_probs=42.0
Q ss_pred CCCCccccCCcccC--CCceecCCc-----hHhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIM--SDPVILSSG-----HTFDRASIQRWLDSG-HRTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~--~~Pv~~~cg-----h~~c~~ci~~~~~~~-~~~CP~c~~~~~ 54 (372)
..++..|+||++-+ .+|++++|+ |.|+..||.+|+... ..+||.|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 34567899999876 478888996 999999999999764 468999999887
No 125
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=4.4e-08 Score=66.12 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=39.4
Q ss_pred CCCccccCCcccCCCceecCCchH-hhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHT-FDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~-~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.++..|+||++...+++.++|||. ||..|+.. ...||.||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchh
Confidence 457889999999999999999999 99999984 467999999887
No 126
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.53 E-value=1.1e-08 Score=76.52 Aligned_cols=46 Identities=24% Similarity=0.463 Sum_probs=0.5
Q ss_pred CccccCCcccCCCce-----------------e-cCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPV-----------------I-LSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv-----------------~-~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+-.|+||++.|.+|. . .+|||.|+..||.+|+.. +.+||.||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 458999999998752 2 489999999999999986 678999998765
No 127
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.51 E-value=2.1e-06 Score=84.41 Aligned_cols=244 Identities=12% Similarity=0.042 Sum_probs=160.9
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccc-cc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDN-KV 168 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~-~~ 168 (372)
+.+...|.+. ++.+|..|+..+.++...+++..+ +.++.+..+|. +.++.++..|+.+|..++..+.. ..
T Consensus 145 ~~l~~~L~~~--~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~--D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 145 GEVEKLLKTS--NSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLN--EKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHSC--CHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTT--CCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhC--CCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 4566667664 889999999999999987764322 57778888888 78899999999999998765322 11
Q ss_pred cccccCChHHHHHHHhc---------------CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcC-----
Q 017402 169 GLVAEGAVSRVVAALRF---------------GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG----- 228 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~---------------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~----- 228 (372)
.+ ...++.++.+|.+ .++-.+.....+|..++..+.... ...++.|..++...
T Consensus 216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKN 288 (618)
T ss_dssp HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSST
T ss_pred HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccc
Confidence 12 3578888888764 367778888888988876542111 12344444444321
Q ss_pred CchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHH
Q 017402 229 KLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKM 304 (372)
Q Consensus 229 ~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~l 304 (372)
....+.-.|+.++..+...+.. .+ .+++.|..++.+. +..++..|..++.. ...++. .....+...
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~l----~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~---~p~~~~--~~~~~i~~~ 358 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESGL----RV-LAINILGRFLLNNDKNIRYVALTSLLKTVQT---DHNAVQ--RHRSTIVDC 358 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHH----HH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH---HHHHHG--GGHHHHHHG
T ss_pred hHHHHHHHHHHHHHhcCCCHHH----HH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh---CHHHHH--HHHHHHHHH
Confidence 1126777888888887553221 11 3567788877543 55677777777653 222333 256677777
Q ss_pred HhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 305 LKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 305 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
+.+.+..++..|+.+|..++... .. .. +++.|+..+.+.+.++|..+...+..+.
T Consensus 359 l~d~d~~Ir~~alelL~~l~~~~-nv-~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la 413 (618)
T 1w63_A 359 LKDLDVSIKRRAMELSFALVNGN-NI-RG-----MMKELLYFLDSCEPEFKADCASGIFLAA 413 (618)
T ss_dssp GGSSCHHHHHHHHHHHHHHCCSS-ST-HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccCCChhHHHHHHHHHHHHcccc-cH-HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 77778888888888888887642 11 11 3466666777777777777777776554
No 128
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.48 E-value=1.1e-06 Score=82.77 Aligned_cols=252 Identities=12% Similarity=0.042 Sum_probs=166.8
Q ss_pred CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc-cc--------cccc
Q 017402 101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD-NK--------VGLV 171 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~-~~--------~~i~ 171 (372)
.+.++|.+|-..|..+...+ ..+.+..|..++.+.+.+..++..|+..|.++..... .. ..+-
T Consensus 13 ~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~ 84 (462)
T 1ibr_B 13 PDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAID 84 (462)
T ss_dssp SCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCC
Confidence 37788999999998866521 1346778888888433468899999999999753311 00 0111
Q ss_pred ---ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcC--CchHHHHHHHHHHHhhcC
Q 017402 172 ---AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG--KLIREKKEAATALYALTS 246 (372)
Q Consensus 172 ---~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~~a~~aL~~L~~ 246 (372)
...+-..++..|.+.+..+ ..++.+|..++..+.... .-.+.++.|+..+.++ +. .++..|+.+|..++.
T Consensus 85 ~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~-~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 85 ANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTE-HMKESTLEAIGYICQ 159 (462)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHHHH
Confidence 1234455777887877777 888899999986642211 2257999999999987 55 899999999999986
Q ss_pred CC--chhHHHHhcCchHHHHHHHhhh------HHHHHHHHHHHhCCHhHHH--HHHhccchHHHHHHHHhcCChhHHHhH
Q 017402 247 FP--ENRKRVVSCGAVPILMRLADAG------LERAVEVLSILVKCKEGRE--EMMRVSGCVGVFVKMLKTGSSRAVQCS 316 (372)
Q Consensus 247 ~~--~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L~~L~~~~~~~~--~i~~~~g~i~~L~~ll~~~~~~~~~~a 316 (372)
.- +...... ..+++.++..+.+. +..++.++.++...-.... .... .-.++.+...+.+.++.++..+
T Consensus 160 ~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~vr~~~ 237 (462)
T 1ibr_B 160 DIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQCPDTRVRVAA 237 (462)
T ss_dssp HSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTTCSSHHHHHHH
T ss_pred hCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhcCCCCHHHHHHH
Confidence 32 2111111 13566777777332 4668888888765321110 0011 1135566666667788999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 317 LFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 317 ~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
+.+|..++...++.-...+..++++.++..+++.++.++..|...+..+.+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 999999987655432222222678888888888899999999998876653
No 129
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.46 E-value=3.6e-06 Score=69.71 Aligned_cols=144 Identities=16% Similarity=0.136 Sum_probs=108.5
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcC-hHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccc
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRD-SASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKV 168 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~ 168 (372)
.++.+|.+. |+.++.+++.+|.++-+.- ...+....+ ..++.++.+++ +.+..+...|+++|..|-.+ +-...
T Consensus 37 ~L~~LL~dk--D~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 37 LILELAGED--DETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALS--QENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHTTSS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCC--STTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHhcc--chHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHh--ccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 366677554 8999999999999999863 223444433 46999999998 89999999999999987666 22222
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
.+ .-.+..+..++++++.-.+.+++..+..+.. ..-. .+++..+..++.+.+. +++..|+.+|.|++...
T Consensus 112 ~y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv------~~~~-~~V~~~l~sLl~Skd~-~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TF--LKAAKTLVSLLESPDDMMRIETIDVLSKLQP------LEDS-KLVRTYINELVVSPDL-YTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB------SCCC-HHHHHHHHHHHTCSSH-HHHHHHHHHHHHHGGGC
T ss_pred HH--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCc------ccch-HHHHHHHHHHHhCCCh-hHHHHHHHHHHHhhccc
Confidence 22 1246778888888999999999999999821 1112 4788888999977666 99999999999998744
Q ss_pred c
Q 017402 249 E 249 (372)
Q Consensus 249 ~ 249 (372)
+
T Consensus 182 ~ 182 (265)
T 3b2a_A 182 A 182 (265)
T ss_dssp S
T ss_pred C
Confidence 3
No 130
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.43 E-value=3.7e-07 Score=97.00 Aligned_cols=262 Identities=13% Similarity=0.098 Sum_probs=171.1
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccc
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL 170 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 170 (372)
.++..+.+. |.+.|..|...|.+........-..-.....++.|++.|. +.+..+|..|+.+|..++..-.. .
T Consensus 10 ~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~--d~~~~vR~~A~~~L~~l~~~~~~-~-- 82 (1230)
T 1u6g_C 10 NLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVSKVKE-Y-- 82 (1230)
T ss_dssp HHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHTTSCH-H--
T ss_pred HHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhCCH-H--
Confidence 455555544 8899999999998876532110000011245777888888 78999999999999998754211 1
Q ss_pred cccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchh----hh-ccccchHHHHHHHhhc-CCchHHHHHHHHHHHhh
Q 017402 171 VAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKA----TI-GDYPYAINALVSLLQN-GKLIREKKEAATALYAL 244 (372)
Q Consensus 171 ~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~----~i-~~~~g~i~~Lv~ll~~-~~~~~~~~~a~~aL~~L 244 (372)
.-...++.++..|.+++..+|..++.+|..++..-.... .. ......+|.|+..+.+ ++. .++..|+.+|.++
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~-~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDV-SVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHH
Confidence 013456777888888888999999999998875432210 00 0113689999999985 444 8999999999998
Q ss_pred cCC-Cc-hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCC-hhHHHhHH
Q 017402 245 TSF-PE-NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGS-SRAVQCSL 317 (372)
Q Consensus 245 ~~~-~~-~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~-~~~~~~a~ 317 (372)
+.. ++ ....+ ...++.|+..+.+. ++.++.+|..++..... .+. ...++.++..+...+ ...+..++
T Consensus 162 ~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 162 LSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhHHHHHH
Confidence 742 11 11111 22445555555433 77889999999875332 222 347888888886643 45677888
Q ss_pred HHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 318 FTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 318 ~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
.++..++...++.-... -..+++.++..+++.++.+|+.|..++..+..
T Consensus 236 ~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp HHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 88888876533311111 14589999999998899999999998876543
No 131
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.41 E-value=6.6e-06 Score=83.81 Aligned_cols=271 Identities=12% Similarity=0.054 Sum_probs=163.3
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc-------------CCChhHHHHHHHHH
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH-------------SDGFTLQEKALSLL 157 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-------------~~~~~~~~~a~~~L 157 (372)
.++..+.+...++.+|..++..|..++...+........ ..++.+++.|... +....++..++.+|
T Consensus 502 ~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 580 (861)
T 2bpt_A 502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVL 580 (861)
T ss_dssp HHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHH
Confidence 455566544334788999999999998765432222222 3567777777631 11345677888888
Q ss_pred hcCCCCccc-cccccccCChHHHHHHHhcCCh-HHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHH
Q 017402 158 LNLSLDDDN-KVGLVAEGAVSRVVAALRFGSP-DCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK 235 (372)
Q Consensus 158 ~~l~~~~~~-~~~i~~~g~i~~lv~~L~~~~~-~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 235 (372)
.++...-.. -... -...++.++..+++.+. .++..+..++..++........- -....++.|+..+.+.+. .++.
T Consensus 581 ~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~~~~~-~vr~ 657 (861)
T 2bpt_A 581 AAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK-YLETFSPYLLKALNQVDS-PVSI 657 (861)
T ss_dssp HHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHHHHCTTS-HHHH
T ss_pred HHHHHHhhhhhHHH-HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHhccccH-HHHH
Confidence 887644221 1111 23577888888887766 88999999999887543221111 113588999999976666 8999
Q ss_pred HHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh------HHHHHHHHHHHhCCHhH-HHHHHhccchHHHHHHHHhcC
Q 017402 236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAG------LERAVEVLSILVKCKEG-REEMMRVSGCVGVFVKMLKTG 308 (372)
Q Consensus 236 ~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~------~e~a~~~L~~L~~~~~~-~~~i~~~~g~i~~L~~ll~~~ 308 (372)
.|+.++..++..-...-.-.-...++.++..+.+. ++.++.+++.++..-.. -..+.. ..++.+...+...
T Consensus 658 ~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~ 735 (861)
T 2bpt_A 658 TAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTK 735 (861)
T ss_dssp HHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcC
Confidence 99999998875322111111124566677777421 66788888888764221 122222 3677777777642
Q ss_pred C-----------hhHHHhHHHHHHHHhcCCHHHHHHHHh--cChhHHHHHHhhcc----cHHHHHHHHHHHHHHhc
Q 017402 309 S-----------SRAVQCSLFTLSCLCCCSQEICGDSRK--EGVLDICMGLLEDD----NEKVRRNANNLIQTLSG 367 (372)
Q Consensus 309 ~-----------~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~~~~l~~ll~~~----~~~v~~~a~~~L~~l~~ 367 (372)
. ..++..++.++..++..-.+....+.. ..+++.+...+.+. ++.+|+.|..+|..|..
T Consensus 736 ~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 736 PENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 1 246677777887776432211111111 12455555555553 78999999999987643
No 132
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.35 E-value=4.2e-06 Score=71.90 Aligned_cols=178 Identities=12% Similarity=0.085 Sum_probs=127.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhccc-ccchhhhccccchHHHHHHHhh-cCCchHHHHHHHHHHHhhcCCCch-hHH
Q 017402 177 SRVVAALRFGSPDCRAIAATIITSLAVV-EVNKATIGDYPYAINALVSLLQ-NGKLIREKKEAATALYALTSFPEN-RKR 253 (372)
Q Consensus 177 ~~lv~~L~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~~a~~aL~~L~~~~~~-~~~ 253 (372)
+.+.+.+.+.+-..|..|+..|..+... +.... .....+++.|..++. +.+. .++..|+.+|..|+..-.. -..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~kd~~~-~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITKDSNV-VLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHHhhhHHH
Confidence 3477888888999999999999998765 22111 122468889999995 6665 8999999999999952211 111
Q ss_pred HHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHh-cCCH
Q 017402 254 VVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLC-CCSQ 328 (372)
Q Consensus 254 i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~ 328 (372)
. -...++.|+..+.+. ++.+..+|.++..... + ...++.|...+++.++.+++.++..|..+. ..++
T Consensus 95 ~-~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~---~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 95 Y-ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----L---EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp H-HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----H---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----H---HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 1 113677777777544 6778888888877432 1 236778888888889999999999999954 4334
Q ss_pred HH-HHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 329 EI-CGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 329 ~~-~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
+. -...+. .+++.|+.++.+.+.++|..|..++..+-
T Consensus 167 ~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 167 TALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp GGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 31 112222 48999999999999999999999997654
No 133
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.34 E-value=3.2e-06 Score=89.74 Aligned_cols=224 Identities=12% Similarity=0.098 Sum_probs=151.6
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc--
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK-- 167 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~-- 167 (372)
+.++..|.+ .++++|..|+..|..++..-+. ..+ ..+++.|+..|. +.++.++..++.+|..++..-...
T Consensus 51 ~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~--d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 51 KMILKLLED--KNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNML--SDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTT--CSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 446666764 4889999999999999865432 111 235677777777 677888999999998876441111
Q ss_pred ----ccccccCChHHHHHHHh-cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402 168 ----VGLVAEGAVSRVVAALR-FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALY 242 (372)
Q Consensus 168 ----~~i~~~g~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 242 (372)
..-.-...++.|...+. +++..++..|+.+|..++..... .........++.|+..+.+.+. .++..|+.+|.
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~-~l~~~~~~ll~~l~~~L~~~~~-~vR~~a~~al~ 200 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG-LLVNFHPSILTCLLPQLTSPRL-AVRKRTIIALG 200 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS-SCTTTHHHHHHHHGGGGGCSSH-HHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHH
Confidence 00112467888889888 47889999999999998753211 1111114688888888887766 89999999999
Q ss_pred hhcCCCchhHHHHhcCchHHHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhcCChhHHHhH
Q 017402 243 ALTSFPENRKRVVSCGAVPILMRLADAG-----LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKTGSSRAVQCS 316 (372)
Q Consensus 243 ~L~~~~~~~~~i~~~g~v~~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~~~~~~~~~a 316 (372)
.++...... +. ...++.++..+... +..++.++..++..... .+.. -...++.+...+...++.+++.+
T Consensus 201 ~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a 275 (1230)
T 1u6g_C 201 HLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYC 275 (1230)
T ss_dssp HHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHH
T ss_pred HHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 998754321 22 24678888877432 44567777777653211 2221 24578999999988888999999
Q ss_pred HHHHHHHhcCCH
Q 017402 317 LFTLSCLCCCSQ 328 (372)
Q Consensus 317 ~~~L~~l~~~~~ 328 (372)
+.++..++...+
T Consensus 276 ~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 276 IQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHHCh
Confidence 999988876533
No 134
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.34 E-value=7.6e-06 Score=67.82 Aligned_cols=181 Identities=14% Similarity=0.064 Sum_probs=136.1
Q ss_pred cCChHHHHHHHhcCChHHHHHHHHHHHHhcccc--cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC-c
Q 017402 173 EGAVSRVVAALRFGSPDCRAIAATIITSLAVVE--VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP-E 249 (372)
Q Consensus 173 ~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-~ 249 (372)
.+.+..|..+|...|+.++..+..+|..+-..- ..+..+. ...++.+++++++.++ .+.-.|+++|..|-.+. -
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~--e~~Ld~iI~llk~~dE-kval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL--ERHLDVFINALSQENE-KVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHTCCSTTH-HHHHHHHHHHHHHHTTCCB
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH--HHHHHHHHHHHhccch-hHHHHHHHHHHHHHcCCCC
Confidence 457888999998999999999999999998763 3333344 3799999999999888 99999999999877643 3
Q ss_pred hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhc
Q 017402 250 NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC 325 (372)
Q Consensus 250 ~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 325 (372)
....+.. ++..|..++.++ .+.++..+.-+.-... ..+.+..+.+++.+.+..++..|..+|.+++.
T Consensus 109 ~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 109 GSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp CHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred CHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 4444443 455677777554 6778777777722110 24567788888888999999999999999998
Q ss_pred CCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhcC
Q 017402 326 CSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSGN 368 (372)
Q Consensus 326 ~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 368 (372)
.+.+-.- -.+++.-+-+++++.++.+++.|..+|..+-..
T Consensus 180 ~S~D~~i---~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 180 SSADSGH---LTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GCSSCCC---GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred ccCCHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 7542211 134677788899999999999999998765443
No 135
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.33 E-value=0.0001 Score=68.18 Aligned_cols=217 Identities=13% Similarity=0.052 Sum_probs=145.2
Q ss_pred hhHHHHHHHHHhcCCCCccccccccccC--ChHHHHHHHhc---------------C--ChHHHHHHHHHHHHhcccccc
Q 017402 147 FTLQEKALSLLLNLSLDDDNKVGLVAEG--AVSRVVAALRF---------------G--SPDCRAIAATIITSLAVVEVN 207 (372)
Q Consensus 147 ~~~~~~a~~~L~~l~~~~~~~~~i~~~g--~i~~lv~~L~~---------------~--~~~~~~~a~~~L~~ls~~~~~ 207 (372)
...+..++.+|..|...++.|..+.+.+ .++.++.+++. + ..+++-.++-.++-|+..++.
T Consensus 182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~ 261 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence 3456678888888888888888887643 46777655542 1 244567788999999988876
Q ss_pred hhhhccccchH--HHHHHHhhcCCchHHHHHHHHHHHhhcCCC-ch----hH-HHHhcCchHHHHHHHhhh-------HH
Q 017402 208 KATIGDYPYAI--NALVSLLQNGKLIREKKEAATALYALTSFP-EN----RK-RVVSCGAVPILMRLADAG-------LE 272 (372)
Q Consensus 208 ~~~i~~~~g~i--~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~-~~----~~-~i~~~g~v~~L~~ll~~~-------~e 272 (372)
...+.. .+.+ +.|+..++...-..+..-++.+|.|+.... .. .. .++..++ ..++..|... .+
T Consensus 262 ~~~l~~-~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 262 ANELVQ-KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp HHHHHT-TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHh-cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence 666665 4543 677777876432389999999999998754 11 22 2333444 5566666221 11
Q ss_pred H-------HHHHHHHHhCCHhHHH------------------------HHHhc-cchHHHHHHHHhc----------CCh
Q 017402 273 R-------AVEVLSILVKCKEGRE------------------------EMMRV-SGCVGVFVKMLKT----------GSS 310 (372)
Q Consensus 273 ~-------a~~~L~~L~~~~~~~~------------------------~i~~~-~g~i~~L~~ll~~----------~~~ 310 (372)
. .-.....++..++... .+.+. -..+..|+++|.+ .++
T Consensus 340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~ 419 (480)
T 1ho8_A 340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK 419 (480)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence 1 1111112222122111 12221 1257899999974 245
Q ss_pred hHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 311 RAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 311 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
.+..-|+.=+..++.+.|+.+..+-+.|+=+.+++++.+.+++||..|..++..+
T Consensus 420 ~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 420 IIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6667888888999999999999999999999999999999999999999999755
No 136
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.32 E-value=2.2e-07 Score=71.92 Aligned_cols=118 Identities=19% Similarity=0.147 Sum_probs=91.2
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccc
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKV 168 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 168 (372)
.+.++..|++. ++.+|..|++.|.++.. + .++.|+.+|+ +.++.++..|+.+|.++..
T Consensus 14 ~~~l~~~L~~~--~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~--d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 14 LVPRGSHMADE--NKWVRRDVSTALSRMGD--E----------AFEPLLESLS--NEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp -------CCSS--CCCSSSSCCSSTTSCSS--T----------THHHHHHGGG--CSCHHHHHHHHHHHGGGCS------
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHhCc--h----------HHHHHHHHHc--CCCHHHHHHHHHHHHhcCC------
Confidence 35577778765 77888888888776532 1 2689999999 7899999999999999852
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
...++.|+..|++++..+|..|+++|..+. . ..+++.|+.++++.+. .++..|..+|.++
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~d~~~-~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------G-ERVRAAMEKLAETGTG-FARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTTSCCT-HHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHhCCCH-HHHHHHHHHHHhC
Confidence 345899999999999999999999999874 2 4689999999987776 8999999988653
No 137
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.22 E-value=4.4e-05 Score=67.25 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=120.8
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHh-hcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHH
Q 017402 218 INALVSLLQNGKLIREKKEAATALYA-LTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMM 292 (372)
Q Consensus 218 i~~Lv~ll~~~~~~~~~~~a~~aL~~-L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~ 292 (372)
+..+++-|.+.+. +.++.++.-|.. ++.+.+-...+++.+|+..|++...++ ...++.++.+|-.+..|...++
T Consensus 120 a~~iiekL~~~~~-~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 120 VNAILEKLYSSSG-PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHCCH-HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhcCCc-HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 4455566666555 778999999998 666788899999999999999999654 6779999999999999999999
Q ss_pred hccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhc--------C--hhHHHHHHhh---cccHHHHHHHH
Q 017402 293 RVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKE--------G--VLDICMGLLE---DDNEKVRRNAN 359 (372)
Q Consensus 293 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--------g--~~~~l~~ll~---~~~~~v~~~a~ 359 (372)
.+...|..|+.++.+....+.+.|+.+|..++.+++.+...+.++ | -...|+.+++ +++.+++.+|.
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 888899999999998888889999999999998877555544332 2 3778889997 67899999998
Q ss_pred HHHHHH
Q 017402 360 NLIQTL 365 (372)
Q Consensus 360 ~~L~~l 365 (372)
.++..+
T Consensus 279 tLIN~l 284 (339)
T 3dad_A 279 TLINKT 284 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888543
No 138
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.22 E-value=1.5e-05 Score=68.36 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=127.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHh-cCChHHHHHHHHHHHHhcccccch-hhh
Q 017402 135 AVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALR-FGSPDCRAIAATIITSLAVVEVNK-ATI 211 (372)
Q Consensus 135 ~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~~~~-~~i 211 (372)
.+.+.+. +.+-..+..|+..|..+... +.....- -...++.|...+. +.+..++..|+.+|..|+..-... ...
T Consensus 19 ~l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4667777 78888999999999887654 2211111 1356778888884 889999999999999998543211 111
Q ss_pred ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhC-C-H
Q 017402 212 GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVK-C-K 285 (372)
Q Consensus 212 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~-~-~ 285 (372)
. ..+++.|+..+.+.+. .++..|..+|.++...... . ..++.+...+++. ++.++..|..+.. . +
T Consensus 96 ~--~~ilp~ll~~l~d~~~-~vr~~a~~aL~~~~~~~~~-~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 A--SACVPSLLEKFKEKKP-NVVTALREAIDAIYASTSL-E-----AQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp H--HHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHTTSCH-H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred H--HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCCH-H-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 2 3589999999998877 9999999999999875431 1 2456677777543 6778888888544 3 2
Q ss_pred h--HHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402 286 E--GREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC 326 (372)
Q Consensus 286 ~--~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 326 (372)
. ....+ . ..++.|+.++.+.++.+|..|..++..++..
T Consensus 167 ~~~~~~~l-~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 167 TALNKKLL-K--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GGCCHHHH-H--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHH-H--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 12222 2 3789999999889999999999999998854
No 139
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.18 E-value=0.00021 Score=56.94 Aligned_cols=210 Identities=15% Similarity=0.160 Sum_probs=151.5
Q ss_pred cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHh-cCChHHHHHHHHHHHHhcccccc
Q 017402 130 SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALR-FGSPDCRAIAATIITSLAVVEVN 207 (372)
Q Consensus 130 ~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~~~ 207 (372)
..++..++.+|. ++-=.++.+|+.++.+++.. ++..+. .+..|+-+++ +.........+++++.++..
T Consensus 31 ~~~l~~lI~~LD--DDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i--- 100 (253)
T 2db0_A 31 ESVLKKLIELLD--DDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--- 100 (253)
T ss_dssp HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhc--cHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHh---
Confidence 356778888887 55567999999999998765 444333 3455666665 45777777788899988753
Q ss_pred hhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC-CCchhHHHHhcCchHHHHHHHhhh-HHHHHHHHHHHhCCH
Q 017402 208 KATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS-FPENRKRVVSCGAVPILMRLADAG-LERAVEVLSILVKCK 285 (372)
Q Consensus 208 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~-~e~a~~~L~~L~~~~ 285 (372)
+..++. +.+|.|..-.+-+++ +++.+-..+|..++. +++-... ++.-+..++.+. ...=+.+|.-+..-.
T Consensus 101 ~Pe~v~--~vVp~lfanyrigd~-kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 101 KPELVK--SMIPVLFANYRIGDE-KTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp CHHHHH--HHHHHHHHHSCCCSH-HHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred CHHHHH--hhHHHHHHHHhcCCc-cceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 333333 688888888888866 999999999998886 4443333 344577777655 445555566666655
Q ss_pred hHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 286 EGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 286 ~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
++.-..+. + .+|.|..+|.+.++-++-.|+.+|.+++..++..|..+ ...++-+.+.++-++.+....|..+
T Consensus 173 en~~~yv~-P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 173 ENSFKYVN-P-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp TTTHHHHG-G-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred ccCccccC-c-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 56655555 2 79999999999999999999999999999988877654 3345556677888888777777644
No 140
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.11 E-value=0.00023 Score=69.78 Aligned_cols=249 Identities=15% Similarity=0.126 Sum_probs=157.5
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
+.+...|.+...++-+|..|+-++.++...+++. +...+.++.+.++|. +.++.++..|+.+|..++.++.. .
T Consensus 149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~--d~d~~V~~~a~~~l~~i~~~~~~--~ 221 (621)
T 2vgl_A 149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLN--DQHLGVVTAATSLITTLAQKNPE--E 221 (621)
T ss_dssp THHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCHH--H
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhC--CCCccHHHHHHHHHHHHHHhChH--H
Confidence 4566777433458999999999999999866632 222588999999998 78999999999999998754321 1
Q ss_pred ccccCChHHHHHHHh----cC-------------ChHHHHHHHHHHHHhccccc--chhhhccccchHHHHHHHhhcCC-
Q 017402 170 LVAEGAVSRVVAALR----FG-------------SPDCRAIAATIITSLAVVEV--NKATIGDYPYAINALVSLLQNGK- 229 (372)
Q Consensus 170 i~~~g~i~~lv~~L~----~~-------------~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~- 229 (372)
+ ...++.++..|. .+ ++=.+......|..++..++ .+..+. +.++.++..+.+..
T Consensus 222 ~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~---~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 222 F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT---ECLETILNKAQEPPK 296 (621)
T ss_dssp H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH---HHHHHHHHHHHSCCS
T ss_pred H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH---HHHHHHHHhhccCcc
Confidence 1 234555555543 22 45567777777777765321 122121 24444444332111
Q ss_pred ---------chHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccc
Q 017402 230 ---------LIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSG 296 (372)
Q Consensus 230 ---------~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g 296 (372)
...+.-+|+.++..+...++... .++..|..++.+. +-.++..|..++........+ . .
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~--~ 368 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K--T 368 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H--T
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H--H
Confidence 12567778888888864332222 2556777777533 445777788887654322233 2 2
Q ss_pred hHHHHHHHHh-cCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 297 CVGVFVKMLK-TGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 297 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
....++..+. +.+..++..|+.+|..++. +++... ++..|...+.+.+.+.+..+...+..+
T Consensus 369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 369 HIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp THHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5677778888 7888999999999999884 344333 455566666666777776666665543
No 141
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.10 E-value=0.00083 Score=65.82 Aligned_cols=241 Identities=13% Similarity=0.094 Sum_probs=158.6
Q ss_pred CChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHH
Q 017402 101 SPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVV 180 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv 180 (372)
.++-+|--|++.|.++.. ++..+ ..++.+.++|.+.+.++.++..|+-++..+....+ ..+...+.++.+.
T Consensus 123 ~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~ 193 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVV 193 (621)
T ss_dssp CCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHH
T ss_pred CCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHH
Confidence 377889899999999854 43332 35678888882117899999999999999865422 2222358999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHH----HhhcC-C-----------chHHHHHHHHHHHhh
Q 017402 181 AALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVS----LLQNG-K-----------LIREKKEAATALYAL 244 (372)
Q Consensus 181 ~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~----ll~~~-~-----------~~~~~~~a~~aL~~L 244 (372)
++|.+.++.++..|+.++..++..+.. .+ ...++.+++ ++..+ . ++-.+...+..|..+
T Consensus 194 ~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~ 268 (621)
T 2vgl_A 194 HLLNDQHLGVVTAATSLITTLAQKNPE--EF---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCY 268 (621)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHCHH--HH---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGS
T ss_pred HHhCCCCccHHHHHHHHHHHHHHhChH--HH---HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHh
Confidence 999988999999999999999765422 11 134444444 43322 1 235777788888888
Q ss_pred cCCC--chhHHHHhcCchHHHHHHHh---------h---h---HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc
Q 017402 245 TSFP--ENRKRVVSCGAVPILMRLAD---------A---G---LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT 307 (372)
Q Consensus 245 ~~~~--~~~~~i~~~g~v~~L~~ll~---------~---~---~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~ 307 (372)
+..+ +.+..+.+ .++.++..+. + + .-.++.++..+...++ +.. .++..|..++.+
T Consensus 269 ~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~----~~~--~~~~~L~~~L~~ 340 (621)
T 2vgl_A 269 PPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN----LLV--RACNQLGQFLQH 340 (621)
T ss_dssp SSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHH----HHH--HHHHHHHHHSSC
T ss_pred CCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHH----HHH--HHHHHHHHHhcC
Confidence 7643 33333333 3333433221 1 1 2234555555553322 222 367778888887
Q ss_pred CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhh-cccHHHHHHHHHHHHHHh
Q 017402 308 GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE-DDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 308 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~-~~~~~v~~~a~~~L~~l~ 366 (372)
.++.++-.|+..|..++...+.. .++ ......++..+. +.+..+|..|..+|..+.
T Consensus 341 ~~~niry~aL~~l~~l~~~~~~~--~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 341 RETNLRYLALESMCTLASSEFSH--EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp SCHHHHHHHHHHHHHHTTCTTTH--HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHHHHhccCcH--HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 88999999999999999775421 122 235677778788 888999999999987664
No 142
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=3e-06 Score=57.55 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=38.7
Q ss_pred CCccccCCcccCCCceec-CCchHhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVIL-SSGHTFDRASIQRWLDSG-HRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~-~cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~ 54 (372)
....|.||.+++..-... .|+|.|...||.+|+... ..+||.|+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 346799999988744433 699999999999999763 378999998765
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.06 E-value=3.6e-05 Score=67.76 Aligned_cols=150 Identities=17% Similarity=0.088 Sum_probs=116.6
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
.+++..|.++ +.+.++.++..|..+-..+..+...|+..+|+..|+++.. ..+...+..++++|.+|-.+.+....
T Consensus 121 ~~iiekL~~~--~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~--~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 121 NAILEKLYSS--SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA--AADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT--TSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHhcC--CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH--hcChHHHHHHHHHHHHHHhccccccc
Confidence 4578888865 6777889999999944457789999999999999999998 77899999999999999888777766
Q ss_pred cc-ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhcc-ccc---------hHHHHHHHhhc--CCchHHHHH
Q 017402 170 LV-AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGD-YPY---------AINALVSLLQN--GKLIREKKE 236 (372)
Q Consensus 170 i~-~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g---------~i~~Lv~ll~~--~~~~~~~~~ 236 (372)
++ ....|..+..++.+.+..+...|..+|..+....+....++. ... -++.|+.+|.+ ..+.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 66 467889999999888899999999999999877653332222 011 25688999973 223377777
Q ss_pred HHHHHHh
Q 017402 237 AATALYA 243 (372)
Q Consensus 237 a~~aL~~ 243 (372)
|...|-.
T Consensus 277 amtLIN~ 283 (339)
T 3dad_A 277 TVTLINK 283 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765544
No 144
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.03 E-value=1.8e-06 Score=66.67 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=82.1
Q ss_pred cCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchh
Q 017402 130 SGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKA 209 (372)
Q Consensus 130 ~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~ 209 (372)
...++.++.+|+ +.++.++..|+.+|..+... .++.|+.+|+++++.+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~--~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMA--DENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CC--SSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhc--CCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 456788888888 78888888888888776321 26999999999999999999999988752
Q ss_pred hhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHH
Q 017402 210 TIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLS 279 (372)
Q Consensus 210 ~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~ 279 (372)
..+++.|+.++++++. .++..|+++|.++.. ..+++.|+.++++. +..++.+|.
T Consensus 72 -----~~a~~~L~~~L~d~~~-~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSG-FVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -----HHHHHHHHHHHHHCCT-HHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -----HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3679999999998877 999999999998862 24678888888543 444554443
No 145
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.00 E-value=2.7e-06 Score=60.12 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=39.5
Q ss_pred cccCCcccCCCce-ecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 10 KCPISLEIMSDPV-ILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 10 ~C~ic~~~~~~Pv-~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.|++|.-.+..-. +++|+|.||..|+..|..++...||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 6999998877654 68999999999999999887889999998877
No 146
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.99 E-value=3.4e-05 Score=66.48 Aligned_cols=185 Identities=10% Similarity=0.101 Sum_probs=127.1
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHH-HhhcChHHHHHHhh-cCCHHHHHHHH-hhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTK-LSKRDSASRRKLTE-SGAVSAVLNCL-KIHSDGFTLQEKALSLLLNLSLDDDNK 167 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~-~g~i~~L~~lL-~~~~~~~~~~~~a~~~L~~l~~~~~~~ 167 (372)
.+-+.+.+. +...|.+|+..|.. +..+.++....-.+ ...+..|...+ + +.+..++..|+.+|..|+.+- +
T Consensus 20 ~f~~~l~s~--~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~--D~n~~v~~~A~~al~~la~~l--~ 93 (249)
T 2qk1_A 20 DFQERITSS--KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK--DANIQAVALAAQSVELICDKL--K 93 (249)
T ss_dssp THHHHHTCS--SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHH--C
T ss_pred hHHHHhhcC--CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhc--c
Confidence 566777654 89999999999999 87643321100111 13466677777 5 678889999999999998432 2
Q ss_pred -cccc-c--cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc-cccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402 168 -VGLV-A--EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG-DYPYAINALVSLLQNGKLIREKKEAATALY 242 (372)
Q Consensus 168 -~~i~-~--~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~-~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 242 (372)
..+. . .-.++.++..+++....++..+..++..+...-+. .... .....++.|+..+++.+. .++..++.+|.
T Consensus 94 ~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~-~vk~~al~~l~ 171 (249)
T 2qk1_A 94 TPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTP-QIRMECTQLFN 171 (249)
T ss_dssp TTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSH-HHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCCh-HHHHHHHHHHH
Confidence 2232 2 34788999999888899999999998888754221 1111 024689999999998866 99999999999
Q ss_pred hhcCCCch-hHH---HHhcCchHHHHHHHhhh----HHHHHHHHHHHhC
Q 017402 243 ALTSFPEN-RKR---VVSCGAVPILMRLADAG----LERAVEVLSILVK 283 (372)
Q Consensus 243 ~L~~~~~~-~~~---i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~ 283 (372)
.+...... ... .+....+|.|.+++++. ++.|..+|..++.
T Consensus 172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 88753321 122 22246888899999544 6667777777664
No 147
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.94 E-value=9e-05 Score=63.84 Aligned_cols=184 Identities=11% Similarity=0.049 Sum_probs=123.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHH-hcccc-cchhhhccccchHHHHHHHh-hcCCchHHHHHHHHHHHhhcCC---Cchh-
Q 017402 179 VVAALRFGSPDCRAIAATIITS-LAVVE-VNKATIGDYPYAINALVSLL-QNGKLIREKKEAATALYALTSF---PENR- 251 (372)
Q Consensus 179 lv~~L~~~~~~~~~~a~~~L~~-ls~~~-~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~~a~~aL~~L~~~---~~~~- 251 (372)
+-..+.+.+-..|..|...|.. +.... +...........+..|.+.+ ++.+. .++..|+.+|..|+.. +...
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~-~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI-QAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHhcccccccH
Confidence 4556678888999999999998 86431 11110122236788999999 45555 8899999999999841 1111
Q ss_pred HHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402 252 KRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC 326 (372)
Q Consensus 252 ~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 326 (372)
.... -.++.++..+.+. ++.+..+|..++..-.. ..... -...++.|...+++.++.+++.++.+|..++..
T Consensus 100 ~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2221 2677788877543 46666667766662111 00000 123677888888888999999999999998865
Q ss_pred CHH---HHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 327 SQE---ICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 327 ~~~---~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
.+. .-...+...+++.+..++.+.+.+||.+|..+|..+-
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 442 2122232468999999999999999999999987653
No 148
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.90 E-value=0.00088 Score=67.43 Aligned_cols=218 Identities=15% Similarity=0.047 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHH
Q 017402 103 LESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAA 182 (372)
Q Consensus 103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~ 182 (372)
+.+|..|...|+....++. +..+++.|..+|. +.+..+++.|+-+|..+-.+..+. .++..|+..
T Consensus 451 ~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~--dd~~~~~~~AalALGli~vGTgn~------~ai~~LL~~ 515 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLY--NDSATSGEAAALGMGLCMLGTGKP------EAIHDMFTY 515 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHTTCCCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHh--cCCHHHHHHHHHHHhhhhcccCCH------HHHHHHHHH
Confidence 3455556666665544332 1124677888887 566666777887877654443332 245667776
Q ss_pred Hh-cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchH
Q 017402 183 LR-FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVP 261 (372)
Q Consensus 183 L~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~ 261 (372)
+. ..+..++..++..|..+... . ...++.+++.|....++-++..++.++.--.....+.. +|+
T Consensus 516 ~~e~~~e~vrR~aalgLGll~~g--------~-~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq 580 (963)
T 4ady_A 516 SQETQHGNITRGLAVGLALINYG--------R-QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVK 580 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHTTT--------C-GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHH
T ss_pred HhccCcHHHHHHHHHHHHhhhCC--------C-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHH
Confidence 54 45788888888888877533 2 45678888888766664666666666654444444433 456
Q ss_pred HHHHHHhhh-----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHH-hcCChhHHHhHHHHHHHHhcCCHHHHHHHH
Q 017402 262 ILMRLADAG-----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKML-KTGSSRAVQCSLFTLSCLCCCSQEICGDSR 335 (372)
Q Consensus 262 ~L~~ll~~~-----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 335 (372)
.|++.+.+. +..|+-.|+.+...+. ..++.++.++ ++.++.+|..|..+|..++.+++.
T Consensus 581 ~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------ 645 (963)
T 4ady_A 581 RLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------ 645 (963)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------
T ss_pred HHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------
Confidence 677776332 5556777776654432 2466666655 568899999999999999876442
Q ss_pred hcChhHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017402 336 KEGVLDICMGLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 336 ~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
..+++.|..++++.++.||..|..+|..+-
T Consensus 646 -~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 646 -QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 125677888888999999999999987654
No 149
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.89 E-value=0.00073 Score=68.69 Aligned_cols=245 Identities=13% Similarity=0.120 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhhcCh---HHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHH
Q 017402 107 LESLTQLTKLSKRDS---ASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAAL 183 (372)
Q Consensus 107 ~~a~~~L~~l~~~~~---~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L 183 (372)
..|+..+..++.... ..-..+ .+.++.+++.+. +....++..|-.++..+...- +...+ ...+|.|+..|
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~-~~~a~--~~~~~~~~~~~ 142 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAG--NKDKEIQSVASETLISIVNAV-NPVAI--KALLPHLTNAI 142 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHS-CGGGH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhC-CHHHH--HHHHHHHHHHh
Confidence 788888998885432 111222 256777777777 677888888777776654321 11222 56789999999
Q ss_pred hcC-ChHHHHHHHHHHHHhcccccchhhh-ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchH
Q 017402 184 RFG-SPDCRAIAATIITSLAVVEVNKATI-GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVP 261 (372)
Q Consensus 184 ~~~-~~~~~~~a~~~L~~ls~~~~~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~ 261 (372)
.+. .=..+..|+.++..|+... ...+ .....+||.+.+.+.+... ++.+.|..++..+|..-+|+.. ...||
T Consensus 143 ~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~-~v~~~~~~~~~~~~~~~~n~d~---~~~~~ 216 (986)
T 2iw3_A 143 VETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKK-EVKAAATAAMTKATETVDNKDI---ERFIP 216 (986)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHGGGCCCTTT---GGGHH
T ss_pred ccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcH-HHHHHHHHHHHHHHhcCCCcch---hhhHH
Confidence 765 4678889999999998654 2332 2335789999999998887 9999999999988875444432 13578
Q ss_pred HHHHHHhhh--HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcC--CHHHHHHHHhc
Q 017402 262 ILMRLADAG--LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC--SQEICGDSRKE 337 (372)
Q Consensus 262 ~L~~ll~~~--~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~ 337 (372)
.|++.+.++ ...++..|+.-....+--..... =.+|.|.+-|...+...++.++.++-|+|+- +|.....++-.
T Consensus 217 ~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~ 294 (986)
T 2iw3_A 217 SLIQCIADPTEVPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK 294 (986)
T ss_dssp HHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred HHHHHhcChhhhHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhh
Confidence 888888665 44555544443332222111111 1366777777777888899999999999985 45444444432
Q ss_pred ChhHHHHHHhhc-ccHHHHHHHHHHHHHHhc
Q 017402 338 GVLDICMGLLED-DNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 338 g~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~ 367 (372)
.+|-+-...+. .++++|+.|.+++..|.+
T Consensus 295 -l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 295 -LLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp -THHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 45555555544 689999999999988853
No 150
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.82 E-value=1.1e-05 Score=52.55 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=39.8
Q ss_pred CCCccccCCcccCCCceecCCc--h---HhhHHHHHHHHhc-CCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSG--H---TFDRASIQRWLDS-GHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cg--h---~~c~~ci~~~~~~-~~~~CP~c~~~~~ 54 (372)
.+...|.||++-..+|...||. + .|.+.|+.+|+.. ++.+||.|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456899999887888878864 3 6899999999975 4678999998775
No 151
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.61 E-value=0.0069 Score=48.37 Aligned_cols=207 Identities=16% Similarity=0.185 Sum_probs=136.0
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccc
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGL 170 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 170 (372)
+++..|.++ -..++.+|+..+..++..-++....+ +..|+-+++. +....+-...+++++.++..... +
T Consensus 36 ~lI~~LDDD--lwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~k-sEaIpltqeIa~a~G~la~i~Pe---~ 104 (253)
T 2db0_A 36 KLIELLDDD--LWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKK-SEAIPLTQEIAKAFGQMAKEKPE---L 104 (253)
T ss_dssp HHHHHTTCS--CHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHH-CCSHHHHHHHHHHHHHHHHHCHH---H
T ss_pred HHHHHhccH--HHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhh-cccCchHHHHHHHHhHHHHhCHH---H
Confidence 466677654 56899999999999998777665554 5567777775 46666767777888877653211 1
Q ss_pred cccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCch
Q 017402 171 VAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPEN 250 (372)
Q Consensus 171 ~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 250 (372)
+ .+.+|.+..-.+-+++.++.+...+|..++..+. ..+ .+++.-+..++.+++. .-+-.|+..|..+..+.
T Consensus 105 v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l~---~~v~rdi~smltskd~-~Dkl~aLnFi~alGen~-- 175 (253)
T 2db0_A 105 V-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLM---ASIVRDFMSMLSSKNR-EDKLTALNFIEAMGENS-- 175 (253)
T ss_dssp H-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHH---HHHHHHHHHHTSCSSH-HHHHHHHHHHHTCCTTT--
T ss_pred H-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHH---HHHHHHHHHHhcCCCh-HHHHHHHHHHHHHhccC--
Confidence 1 2345555555566899999999999999986542 222 3678888899998776 55656666665554432
Q ss_pred hHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhc
Q 017402 251 RKRVVSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCC 325 (372)
Q Consensus 251 ~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 325 (372)
..-+ .-.+|.|..+|.+. +..++.+|.+++.....-.. .+...++-+.+.|+.++......|..+..
T Consensus 176 -~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 176 -FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp -HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred -cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 2221 13577888888554 66789999999985333222 22223344556777777766666666553
No 152
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.50 E-value=0.00088 Score=60.35 Aligned_cols=238 Identities=11% Similarity=0.037 Sum_probs=137.1
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV 171 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 171 (372)
.++.+.+. +.+.|+=..-.+..++...++ +. =++..+.+=+. +.++-++-.|+++|.++...+-.
T Consensus 73 v~kl~~s~--d~~lKrLvYLyl~~~~~~~~e----~i--Lv~Nsl~kDl~--~~N~~iR~lALRtL~~I~~~~m~----- 137 (355)
T 3tjz_B 73 MTKLFQSN--DPTLRRMCYLTIKEMSCIAED----VI--IVTSSLTKDMT--GKEDSYRGPAVRALCQITDSTML----- 137 (355)
T ss_dssp HHGGGGCC--CHHHHHHHHHHHHHHTTTSSC----GG--GGHHHHHHHHH--SSCHHHHHHHHHHHHHHCCTTTH-----
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHhCCCHHH----HH--HHHHHHHhhcC--CCcHhHHHHHHHHHhcCCCHHHH-----
Confidence 34455543 666776667777777764221 11 24566666677 78899999999999999644321
Q ss_pred ccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchh
Q 017402 172 AEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENR 251 (372)
Q Consensus 172 ~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 251 (372)
....+.+.+.|.+.++.++..|+-+..+|.... .+.+ + +.++.+-+++.+.+. -+.-+|+.+|..+...+..
T Consensus 138 -~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v-~--~~~~~l~~ll~d~n~-~V~~~Al~lL~ei~~~d~~- 209 (355)
T 3tjz_B 138 -QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV-K--RWVNEAQEAASSDNI-MVQYHALGLLYHVRKNDRL- 209 (355)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH-H--TTHHHHHHHTTCSSH-HHHHHHHHHHHHHHTTCHH-
T ss_pred -HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH-H--HHHHHHHHHhcCCCc-cHHHHHHHHHHHHHhhchH-
Confidence 234566777888899999999999999886433 3333 3 689999999988776 8888999999999876521
Q ss_pred HHHHhcCchHHHHHHHhhh---HHH-HHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCC
Q 017402 252 KRVVSCGAVPILMRLADAG---LER-AVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS 327 (372)
Q Consensus 252 ~~i~~~g~v~~L~~ll~~~---~e~-a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 327 (372)
++..|+..+..+ .+- -+.+|..+......-..- .....++.|...+++.++.+.-.|+.++..+....
T Consensus 210 -------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~ 281 (355)
T 3tjz_B 210 -------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS 281 (355)
T ss_dssp -------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred -------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence 233344444332 111 223344333321111000 11234555556666777888888888877765421
Q ss_pred HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 328 QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 328 ~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
.. .. ..++..|..++.+.++++|-.|.+.|..+
T Consensus 282 ~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l 314 (355)
T 3tjz_B 282 AK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKV 314 (355)
T ss_dssp -----------CCCTHHHHHHSSSSSSHHHHHHCC---
T ss_pred HH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 11 11 22355666677777777777776665544
No 153
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.48 E-value=0.00092 Score=62.63 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=151.8
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc--CCHHHHHHHHh--hc------CCChhHHHHHHHHHhcC
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES--GAVSAVLNCLK--IH------SDGFTLQEKALSLLLNL 160 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~--~~------~~~~~~~~~a~~~L~~l 160 (372)
.|+.-|-+. ..++|-.|+..|+.+.+......-..... ...-.|+-+|. .. .....+|+.++.+|..+
T Consensus 178 ~L~~DLFdp--~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 178 QISDNLLSY--EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp HHHHHTTCS--SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHhcCc--chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 344445444 78999999999999886543111111111 22223333332 11 12356899999999888
Q ss_pred CCC-ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHH
Q 017402 161 SLD-DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAAT 239 (372)
Q Consensus 161 ~~~-~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 239 (372)
.+ ++. ..++..++..+....=+++..+.-.|.++ ++.+....++++.++..|.+.++ +++..|+.
T Consensus 256 -~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DD-DVRAVAAe 321 (800)
T 3oc3_A 256 -YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDE-DIKLLSAE 321 (800)
T ss_dssp -TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSH-HHHHHHHH
T ss_pred -HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCccc-HHHHHHHH
Confidence 65 332 34455565555667788888888888888 22332246899999999999888 99999999
Q ss_pred HHHhhcCCCchhHHHHhcCchHHHHHHH----hh------hHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCC
Q 017402 240 ALYALTSFPENRKRVVSCGAVPILMRLA----DA------GLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGS 309 (372)
Q Consensus 240 aL~~L~~~~~~~~~i~~~g~v~~L~~ll----~~------~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~ 309 (372)
+|..++ .+ +.++.++..+ .+ +....+.+|+.|+..+.. .......+|.|...+.+.-
T Consensus 322 tLiPIA-~p---------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtI 388 (800)
T 3oc3_A 322 LLCHFP-IT---------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPV 388 (800)
T ss_dssp HHTTSC-CS---------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSS
T ss_pred Hhhhhc-ch---------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCc
Confidence 999998 22 3344444444 21 156778888888886631 1223467889999999899
Q ss_pred hhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHH-HHhhcccHHHHHHHHHHHH
Q 017402 310 SRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICM-GLLEDDNEKVRRNANNLIQ 363 (372)
Q Consensus 310 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~-~ll~~~~~~v~~~a~~~L~ 363 (372)
..+|..++.+|..+. ..+ .+..+. +++-..++++++.+..+-+
T Consensus 389 TSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 389 PEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999998776 111 222332 3555678888888877764
No 154
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.42 E-value=1.3e-05 Score=70.21 Aligned_cols=48 Identities=19% Similarity=0.517 Sum_probs=37.3
Q ss_pred CCccccCCcccCCC----cee----cCCchHhhHHHHHHHHhcCC----------CCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSD----PVI----LSSGHTFDRASIQRWLDSGH----------RTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~----Pv~----~~cgh~~c~~ci~~~~~~~~----------~~CP~c~~~~~ 54 (372)
..-.|+||...+.+ |-. ..|||.|+..|+.+|+.... .+||.|+.+++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34579999999887 422 36999999999999996411 36999998765
No 155
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.19 E-value=0.076 Score=53.66 Aligned_cols=200 Identities=12% Similarity=0.042 Sum_probs=125.0
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccccchhhh
Q 017402 133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVEVNKATI 211 (372)
Q Consensus 133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~~~~~~i 211 (372)
+..|+..+.+ +.+..++..++..|..+..... ..++.+++.|.. .++.+|..++.++.--....
T Consensus 509 i~~LL~~~~e-~~~e~vrR~aalgLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGT------ 573 (963)
T 4ady_A 509 IHDMFTYSQE-TQHGNITRGLAVGLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGT------ 573 (963)
T ss_dssp HHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS------
T ss_pred HHHHHHHHhc-cCcHHHHHHHHHHHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC------
Confidence 4566666553 4567788888888887755433 345778888875 56667666666655322111
Q ss_pred ccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhh-h----HHHHHHHHHHHhCCHh
Q 017402 212 GDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA-G----LERAVEVLSILVKCKE 286 (372)
Q Consensus 212 ~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~-~----~e~a~~~L~~L~~~~~ 286 (372)
+. ..+|+.|++.+.+..+..++..|+.+|..+...++ ..++.++.+|.. . +..+..+|+.++....
T Consensus 574 Gn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 574 GN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp CC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC
T ss_pred CC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC
Confidence 12 35788788777765544899999999998876443 245666665532 2 5567788888876422
Q ss_pred HHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHH-HHHhcChhHHHHHHhhc--ccHHHHHHHHHHHH
Q 017402 287 GREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICG-DSRKEGVLDICMGLLED--DNEKVRRNANNLIQ 363 (372)
Q Consensus 287 ~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~~~~l~~ll~~--~~~~v~~~a~~~L~ 363 (372)
. ..++..|..++.+.+..+++.|+.+|..+-....+... .+ .+....|.....+ .+..++-.|+-+.-
T Consensus 645 ~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 645 L-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp C-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred c-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 1 22567777788888999999999999998765333200 11 1233445555543 34556665555544
Q ss_pred HH
Q 017402 364 TL 365 (372)
Q Consensus 364 ~l 365 (372)
.+
T Consensus 716 ll 717 (963)
T 4ady_A 716 IM 717 (963)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 156
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.15 E-value=0.14 Score=47.40 Aligned_cols=230 Identities=14% Similarity=0.178 Sum_probs=140.7
Q ss_pred hcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc---ccccc-cccC-ChHHHHHHHhcCC-hHHHHHHHHHHHHhc
Q 017402 129 ESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD---NKVGL-VAEG-AVSRVVAALRFGS-PDCRAIAATIITSLA 202 (372)
Q Consensus 129 ~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~---~~~~i-~~~g-~i~~lv~~L~~~~-~~~~~~a~~~L~~ls 202 (372)
...++..++.+|.. ..+.++....+..+..|..++. .+..+ .+.. ....+.....+.+ .-....+..++..++
T Consensus 75 ~~~~~~~~l~lL~~-~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~ 153 (480)
T 1ho8_A 75 NGKTLIPLIHLLST-SDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV 153 (480)
T ss_dssp SSTTHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHhh-cChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 34578889999985 3677888888888877665543 22222 2222 2222222222333 334455555555554
Q ss_pred ccccchhhhccccchHH------HHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcC--chHHHHHHHhh-----
Q 017402 203 VVEVNKATIGDYPYAIN------ALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCG--AVPILMRLADA----- 269 (372)
Q Consensus 203 ~~~~~~~~i~~~~g~i~------~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g--~v~~L~~ll~~----- 269 (372)
..... . ...++ -++..|+.....+.+.-++.+|..|...++.|..+.+.+ .++.+++++..
T Consensus 154 ~~~~~-----~-~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~ 227 (480)
T 1ho8_A 154 QNGLH-----N-VKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQ 227 (480)
T ss_dssp STTTC-----C-HHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred ccCCc-----c-HhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccc
Confidence 22211 1 23333 344455553322556678999999999999999998663 46777765521
Q ss_pred -------------h---HHHHHHHHHHHhCCHhHHHHHHhccchH--HHHHHHHhc-CChhHHHhHHHHHHHHhcCCH--
Q 017402 270 -------------G---LERAVEVLSILVKCKEGREEMMRVSGCV--GVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQ-- 328 (372)
Q Consensus 270 -------------~---~e~a~~~L~~L~~~~~~~~~i~~~~g~i--~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~-- 328 (372)
+ .=.++.+++.|+..++..+.+.. .+.. ..|+.+++. ..+++.+-++.+|.|+...++
T Consensus 228 ~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~-~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~ 306 (480)
T 1ho8_A 228 LATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQ-KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQ 306 (480)
T ss_dssp -----------CCHHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTT
T ss_pred cccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHh-cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchh
Confidence 1 22467889999999888887776 4433 567777765 568888999999999887652
Q ss_pred --HHHH-HHHhcChhHHHHHHhhc---ccHHHHHHHHHHHHHHhc
Q 017402 329 --EICG-DSRKEGVLDICMGLLED---DNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 329 --~~~~-~~~~~g~~~~l~~ll~~---~~~~v~~~a~~~L~~l~~ 367 (372)
.... .++..++++ ++..++. +++++.+--..+...|.+
T Consensus 307 ~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~ 350 (480)
T 1ho8_A 307 HKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILEN 350 (480)
T ss_dssp HHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHH
Confidence 2223 344455655 5555543 477777766666555543
No 157
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.07 E-value=0.023 Score=47.87 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=120.1
Q ss_pred HHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc----hHHHHHHHHHHHhhcCCC--chhHHHHhcCchHHHHH
Q 017402 192 AIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL----IREKKEAATALYALTSFP--ENRKRVVSCGAVPILMR 265 (372)
Q Consensus 192 ~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~----~~~~~~a~~aL~~L~~~~--~~~~~i~~~g~v~~L~~ 265 (372)
-+|...|..++++++.+..+.. +...-.|...|+..+. .-++-.++++++.|...+ +....+.+.+.||..++
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~-a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHH-TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHH-ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 4667778888988899888877 5666666666665432 257778999999998754 46677778999999999
Q ss_pred HHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHH--------hcCChhHHHhHHHHHHHHhcCCHHHHHH
Q 017402 266 LADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKML--------KTGSSRAVQCSLFTLSCLCCCSQEICGD 333 (372)
Q Consensus 266 ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll--------~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 333 (372)
.++.| +-.|..++..+-.++.|-..++.+..-+..+..++ ...+++..++.+++-..++.+ +..+..
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~a 231 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREA 231 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHH
Confidence 99877 44688899999999999888777543332222222 347788889999999999976 888877
Q ss_pred HHhcChhHHH------HHHhhcccHHHHHHHHHHHHHH
Q 017402 334 SRKEGVLDIC------MGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 334 ~~~~g~~~~l------~~ll~~~~~~v~~~a~~~L~~l 365 (372)
+.+. +|.- -.++ .+++.+|+--..++.++
T Consensus 232 L~~~--LP~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 232 LRQC--LPDQLKDTTFAQVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHH--SCGGGTSSTTHHHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHh--CcHHhhChHHHHHH-hcCHHHHHHHHHHHHhc
Confidence 7652 2211 1222 25667777766666655
No 158
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.05 E-value=0.033 Score=57.45 Aligned_cols=251 Identities=11% Similarity=0.106 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc----CCChhHHHHHHHHHhcCCCCccccc-ccc---c-c
Q 017402 103 LESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH----SDGFTLQEKALSLLLNLSLDDDNKV-GLV---A-E 173 (372)
Q Consensus 103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~~~~~~~a~~~L~~l~~~~~~~~-~i~---~-~ 173 (372)
...|..|...|..++...+ +.+.. -.++.+...+... +.+-..++.|+.++..++..-.... .+. . .
T Consensus 375 ~s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred cCcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 3467777888888887433 22211 1233333444421 1334578889999988865421111 111 0 0
Q ss_pred CChHH----HHHHHhcC---ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 017402 174 GAVSR----VVAALRFG---SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS 246 (372)
Q Consensus 174 g~i~~----lv~~L~~~---~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~ 246 (372)
...+. ++..|.+. ++-+|..|++++..++..- .... . ..+++.+++.|.+.+. .++..|+.+|.+++.
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~-l--~~~l~~l~~~L~d~~~-~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ-L--IELMPILATFLQTDEY-VVYTYAAITIEKILT 525 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-H--HHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-H--HHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHh
Confidence 23333 33344555 7889999999999998642 1221 1 3678888888887654 899999999999987
Q ss_pred CCc---------hhHHHHh--cCchHHHHHHHhh---------hHHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHH
Q 017402 247 FPE---------NRKRVVS--CGAVPILMRLADA---------GLERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKML 305 (372)
Q Consensus 247 ~~~---------~~~~i~~--~g~v~~L~~ll~~---------~~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll 305 (372)
..+ .+..+.. ...++.|+.+++. ..+.++.+|..++.... +.+.. ....++.|...+
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~--~~~~p~~~~l~~~L~~~l 603 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE--DSIQPLFPQLLAQFIEIV 603 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT--TTTGGGHHHHHHHHHHHH
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHH
Confidence 421 2333321 1345556666644 13556666666654211 11111 012344444444
Q ss_pred hc-----CChhHHHhHHHHHHHHhcC-CHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 306 KT-----GSSRAVQCSLFTLSCLCCC-SQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 306 ~~-----~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
.. .++......+.+|..++.. +++....+. ..+++.+..+++.+..+....+..++..+
T Consensus 604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 32 2345555677777777664 344433333 34778888888776555666666665544
No 159
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.72 E-value=0.15 Score=45.79 Aligned_cols=238 Identities=14% Similarity=0.049 Sum_probs=136.2
Q ss_pred hhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCC
Q 017402 96 LTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGA 175 (372)
Q Consensus 96 L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~ 175 (372)
+++...++..+.+++..+-.+-...+.+-+.-. ...-..+++++. +.+.+.+....-.+.+++..++. .+ =+
T Consensus 34 fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~--s~d~~lKrLvYLyl~~~~~~~~e--~i---Lv 105 (355)
T 3tjz_B 34 FNETPINPRKCAHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQ--SNDPTLRRMCYLTIKEMSCIAED--VI---IV 105 (355)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGG--CCCHHHHHHHHHHHHHHTTTSSC--GG---GG
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCCCHHH--HH---HH
Confidence 333333455545566555544433322211111 112344566777 78889998888888888766322 12 24
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH
Q 017402 176 VSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV 255 (372)
Q Consensus 176 i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 255 (372)
+..+.+=+.++++-+|..|.++|.++...+ +.+ ...+.+-..+.+.++ -+++.|+.+...|...... ++
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-----m~~--~l~~~lk~~L~d~~p-yVRk~A~l~~~kL~~~~pe---~v 174 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDST-----MLQ--AIERYMKQAIVDKVP-SVSSSALVSSLHLLKCSFD---VV 174 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-----THH--HHHHHHHHHHTCSSH-HHHHHHHHHHHHHTTTCHH---HH
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-----HHH--HHHHHHHHHcCCCCH-HHHHHHHHHHHHHhccCHH---HH
Confidence 667778888899999999999999996433 222 567777788888777 9999999999999864322 23
Q ss_pred hcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcC---ChhHHHhHHHHHHHHhcCC-
Q 017402 256 SCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTG---SSRAVQCSLFTLSCLCCCS- 327 (372)
Q Consensus 256 ~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~- 327 (372)
+ +.+..+-+++.+. .-+|+.+|..+...+. ..+..|+..+..+ ++-.+-.-++.+..++..+
T Consensus 175 ~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 175 K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED 244 (355)
T ss_dssp H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence 3 5777888888443 5578888888887531 1445555555443 2333322222222222222
Q ss_pred HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 328 QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 328 ~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
++ .....++.+...+++.++-|.-.|++.+-.+..
T Consensus 245 ~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 245 GS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp -----------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred hh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 11 223466777777777777777666666654543
No 160
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.68 E-value=0.066 Score=54.59 Aligned_cols=215 Identities=13% Similarity=0.094 Sum_probs=138.0
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVG 169 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 169 (372)
|.++..+.+. ...+|..|-.++..+...-+.+. + ...+|.|+..|.+ ...=..+..|+.+|..|+... ...
T Consensus 98 ~~~~~~~~dk--~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~-~~kw~~k~~~l~~~~~~~~~~--~~~ 168 (986)
T 2iw3_A 98 PAICTNAGNK--DKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVE-TNKWQEKIAILAAFSAMVDAA--KDQ 168 (986)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHS--HHH
T ss_pred HHHHHHhcCC--chHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHh--HHH
Confidence 3344444433 56778777777777775433222 2 4468999999973 234578899999999987643 233
Q ss_pred ccc--cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCC
Q 017402 170 LVA--EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSF 247 (372)
Q Consensus 170 i~~--~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~ 247 (372)
+.. ...||.+...+-+--++++..|..++..++..-.|++. ...||.|++.+.+++. .-.+...|+.-+..
T Consensus 169 ~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p~~---~~~~~~~l~~~tfv 241 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADPTE---VPETVHLLGATTFV 241 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCTTH---HHHHHHHHTTCCCC
T ss_pred HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcChhh---hHHHHHHhhcCeeE
Confidence 332 56788888888777899999999999999977777776 4689999999998743 44445555444433
Q ss_pred CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC---HhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHH
Q 017402 248 PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC---KEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFT 319 (372)
Q Consensus 248 ~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~---~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~ 319 (372)
.+.-.-... =.+|.|.+-|... ..+++-++.|||+- +.....+.. ..+|.|-+.... .+|++|+.|..+
T Consensus 242 ~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--~l~p~~~~~~~~~~~pe~r~~~~~a 318 (986)
T 2iw3_A 242 AEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG--KLLPGLKSNFATIADPEAREVTLRA 318 (986)
T ss_dssp SCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT--TTHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred eeecchhHH-HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh--hhhhHHHHHhhccCCHHHHHHHHHH
Confidence 331111100 0233344444221 56788889999984 444444444 467777666655 678888877777
Q ss_pred HHHH
Q 017402 320 LSCL 323 (372)
Q Consensus 320 L~~l 323 (372)
+..|
T Consensus 319 ~~~l 322 (986)
T 2iw3_A 319 LKTL 322 (986)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7666
No 161
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.67 E-value=0.0006 Score=49.65 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=29.1
Q ss_pred CCccccCCcc-cCCCcee--cCCchHhhHHHHHHHHh
Q 017402 7 DDFKCPISLE-IMSDPVI--LSSGHTFDRASIQRWLD 40 (372)
Q Consensus 7 ~~~~C~ic~~-~~~~Pv~--~~cgh~~c~~ci~~~~~ 40 (372)
+++.|++|.+ ++.+|+. +.|+|+||+.|+..+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4688999996 4789998 89999999999998443
No 162
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.63 E-value=0.01 Score=50.04 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCC---hhHHHHHHHHHhcCCCCccc--cccccccCChHHHHH
Q 017402 107 LESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDG---FTLQEKALSLLLNLSLDDDN--KVGLVAEGAVSRVVA 181 (372)
Q Consensus 107 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~---~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~lv~ 181 (372)
-+|+..|+-+|. +++.|..|.++++.-.|..+|...+.+ ..++-.++++++.|...++. ..-+.+.+.+|..++
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 467777788887 778999999999888899999843333 34789999999998866442 223346889999999
Q ss_pred HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHH-------HHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHH
Q 017402 182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINA-------LVSLLQNGKLIREKKEAATALYALTSFPENRKRV 254 (372)
Q Consensus 182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~-------Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i 254 (372)
.++.|+.-.|..|+.++..+-.++.+...+.....-+.. ++.-+....++.+.++..++-..|+.++..+..+
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL 232 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL 232 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999998888777666553333333 3333333334488888888888888888777766
Q ss_pred H
Q 017402 255 V 255 (372)
Q Consensus 255 ~ 255 (372)
.
T Consensus 233 ~ 233 (268)
T 2fv2_A 233 R 233 (268)
T ss_dssp H
T ss_pred H
Confidence 5
No 163
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.32 E-value=0.1 Score=45.85 Aligned_cols=143 Identities=14% Similarity=0.061 Sum_probs=90.0
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhh----h----HHHHHHHHHHHhCCHhHHHHH
Q 017402 220 ALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADA----G----LERAVEVLSILVKCKEGREEM 291 (372)
Q Consensus 220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~----~----~e~a~~~L~~L~~~~~~~~~i 291 (372)
.+...+.+...+..+.-++++++|+..++.++..+... ...+++.+.+ . +-.+..++.|++.........
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~ 228 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI 228 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc
Confidence 44444444333467889999999999999998887753 3445555421 1 334566777777632110000
Q ss_pred HhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHH
Q 017402 292 MRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQT 364 (372)
Q Consensus 292 ~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~ 364 (372)
-.....+..+..++.. .+++....++.+|.++...+.+..+.....|+...+-.+... ...+|.+.+..+|..
T Consensus 229 ~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 229 EGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 0001133444444533 567778888899999998777777666667777766666665 477888988888754
No 164
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.09 E-value=0.003 Score=53.51 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=38.2
Q ss_pred CccccCCcccCCCceecC-CchHhhHHHHHHHHhcC-CCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSG-HRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~-~~~CP~c~~~~~ 54 (372)
-..|.+|.++...-+..+ |++.|+..|+.+|+... ...||.|+...+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 456999999877655554 99999999999999753 468999998765
No 165
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.45 E-value=0.11 Score=45.65 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHH-hh--cCCChhHHHHHHHHHhcCCCCcccccccccc--CChHHH
Q 017402 105 SKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCL-KI--HSDGFTLQEKALSLLLNLSLDDDNKVGLVAE--GAVSRV 179 (372)
Q Consensus 105 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~l 179 (372)
.+.-++..++-++. ++.....+.+.+.-..++..+ .. ....+..+-.+++++.|+..++..+..+... .+++.+
T Consensus 118 ~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~ 196 (304)
T 3ebb_A 118 IVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHA 196 (304)
T ss_dssp TCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 34444555555444 565555565543334444322 21 1234567999999999999888887766642 344444
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHh
Q 017402 180 VAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVS 256 (372)
Q Consensus 180 v~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~ 256 (372)
...+...+..++..++.++.|++.........-....++..+..++....+.++.-.++.+|.+|...+.....+.+
T Consensus 197 ~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak 273 (304)
T 3ebb_A 197 IELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAK 273 (304)
T ss_dssp HGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 44444568999999999999999754211111111235555556666555558899999999999976544444443
No 166
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.31 E-value=0.28 Score=44.67 Aligned_cols=177 Identities=16% Similarity=0.139 Sum_probs=108.8
Q ss_pred CCCchhHHHHhhccCCChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhc---------CCChhHHHHHHH
Q 017402 86 NPNPQTLISVLTSKSSPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIH---------SDGFTLQEKALS 155 (372)
Q Consensus 86 ~~~~~~li~~L~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~---------~~~~~~~~~a~~ 155 (372)
...+...+..|.++.+ .+.....+..|+..-.. ...--+.|+ .+|+..|+++|... ..+...+..+++
T Consensus 65 ~~sP~~yi~~L~~~~~-~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~ 142 (383)
T 3eg5_B 65 SRSAMMYIQELRSGLR-DMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIR 142 (383)
T ss_dssp CCCHHHHHHHHTTTCC-HHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccc-chhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHH
Confidence 3445668888887632 33233455555543333 344556676 78899999998631 123467888899
Q ss_pred HHhcCCCCccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhccccc--c-hhhhcc---------ccchHHHHH
Q 017402 156 LLLNLSLDDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV--N-KATIGD---------YPYAINALV 222 (372)
Q Consensus 156 ~L~~l~~~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~--~-~~~i~~---------~~g~i~~Lv 222 (372)
+|..+.....+...+.+ ...+..|+..|.+.++.++..+..+|..++..++ + ...+.+ ...-+..++
T Consensus 143 CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv 222 (383)
T 3eg5_B 143 CLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL 222 (383)
T ss_dssp HHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 99888777666665554 6789999999988999999999999988886553 2 222211 023356677
Q ss_pred HHhhcCCchHHHHHHHHHHHh-hcCCCc---hh----HHHHhcCchHHHHH
Q 017402 223 SLLQNGKLIREKKEAATALYA-LTSFPE---NR----KRVVSCGAVPILMR 265 (372)
Q Consensus 223 ~ll~~~~~~~~~~~a~~aL~~-L~~~~~---~~----~~i~~~g~v~~L~~ 265 (372)
+.+++....+.+. ++..+.| +....+ .| ..+...|..+.+-+
T Consensus 223 ~~L~~~~~~e~~~-~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~ 272 (383)
T 3eg5_B 223 DGLKSGTSIALKV-GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE 272 (383)
T ss_dssp HTTSTTSCHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHccCcHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH
Confidence 7777654424444 4444444 444332 33 33445555554443
No 167
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.014 Score=52.03 Aligned_cols=64 Identities=20% Similarity=0.367 Sum_probs=49.8
Q ss_pred CccccCCcccCCCcee-cCCchH--hhHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCccHHHHHHHHHH
Q 017402 8 DFKCPISLEIMSDPVI-LSSGHT--FDRASIQRWLD-SGHRTCPITKLPLPDQPSLIPNHALRSLISNF 72 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~-~~cgh~--~c~~ci~~~~~-~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~ 72 (372)
.+.||+....|..|+. ..|.|. |+..-+..... .....||.|.+.+. ..++..+..+..++...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~-~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA-LENLAISEFVDDILQNC 316 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC-GGGEEEBHHHHHHHTTS
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC-HHHeeEcHHHHHHHHhc
Confidence 4789999999999996 569997 66554444433 34678999999998 88899998888766543
No 168
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.08 E-value=0.32 Score=42.92 Aligned_cols=116 Identities=13% Similarity=0.129 Sum_probs=89.5
Q ss_pred HHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC
Q 017402 150 QEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK 229 (372)
Q Consensus 150 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~ 229 (372)
...+...|.-|..+.+...-+++.+|+..+...+.-++.++.......|...|........ .....+|.++..+....
T Consensus 260 vtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 260 IIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCC
Confidence 3444555555544455667889999999999999999999999999999998754333222 22478999999988654
Q ss_pred chHHHHHHHHHHHhhcCCCc-hhHHHHhcCchHHHHHHH
Q 017402 230 LIREKKEAATALYALTSFPE-NRKRVVSCGAVPILMRLA 267 (372)
Q Consensus 230 ~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~L~~ll 267 (372)
+.++.-...+.|+|...+.. .++..+..|+|+.|-+.+
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 44889999999999998775 667778899999988877
No 169
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.03 E-value=1.7 Score=44.60 Aligned_cols=207 Identities=15% Similarity=0.071 Sum_probs=113.9
Q ss_pred CChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHH---h--cCChHHHHHHHHHHHHhcccccchhhhccccchHH
Q 017402 145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAAL---R--FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAIN 219 (372)
Q Consensus 145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L---~--~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~ 219 (372)
.+-..++.++.++..++..-.... ...++.++.++ . +.++.++..+++++..++..-...... ...+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHH
Confidence 344578999999999987622111 23455555544 2 237889999999999988543211122 136788
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHh--cCchHHHHHHHhhh------HHHHHHHHHHHhCC--HhHHH
Q 017402 220 ALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVS--CGAVPILMRLADAG------LERAVEVLSILVKC--KEGRE 289 (372)
Q Consensus 220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~--~g~v~~L~~ll~~~------~e~a~~~L~~L~~~--~~~~~ 289 (372)
.|+..+ + . .++..|+.++.+++.. .+..+.. .+.+..+..+++.+ .+.+..++..++.. ++...
T Consensus 550 ~l~~~l-~--~-~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 550 LLVRGL-N--S-SMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHH-H--S-SCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHh-C--h-HHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 888888 3 3 7899999999999942 3333331 13445555556442 44566666666542 23333
Q ss_pred HHHhccchHHHHHHHH----hcC--ChhHHHhHHHHHHHHhcCCH-------HHH------H--HHHhcChhHHHHHHhh
Q 017402 290 EMMRVSGCVGVFVKML----KTG--SSRAVQCSLFTLSCLCCCSQ-------EIC------G--DSRKEGVLDICMGLLE 348 (372)
Q Consensus 290 ~i~~~~g~i~~L~~ll----~~~--~~~~~~~a~~~L~~l~~~~~-------~~~------~--~~~~~g~~~~l~~ll~ 348 (372)
.... ..++.+...+ +.. ++..+......+..++..-. +.. . .-....+++.+..++.
T Consensus 624 ~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 701 (971)
T 2x1g_F 624 KYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAE 701 (971)
T ss_dssp HHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHH
Confidence 3332 2344444433 222 33334444444444432100 000 0 0112346777777776
Q ss_pred c--ccHHHHHHHHHHHHHH
Q 017402 349 D--DNEKVRRNANNLIQTL 365 (372)
Q Consensus 349 ~--~~~~v~~~a~~~L~~l 365 (372)
. .++.+.+.+.++++.+
T Consensus 702 ~~~~~~~v~e~~~~~~~~~ 720 (971)
T 2x1g_F 702 MWVEEIDVLEAACSAMKHA 720 (971)
T ss_dssp HTTTCHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 4 3678999999988764
No 170
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.94 E-value=1.7 Score=38.20 Aligned_cols=197 Identities=16% Similarity=0.130 Sum_probs=141.7
Q ss_pred cccccCChHHHHHHHhcCChHHHHHHHHHHHHhccccc-ch----hhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402 169 GLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV-NK----ATIGDYPYAINALVSLLQNGKLIREKKEAATALYA 243 (372)
Q Consensus 169 ~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~-~~----~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~ 243 (372)
.+.+.+.+..|+..|..=+.+.|..++.+..++-.... .+ ..+.....++..|+.--. .+++.-.+-..|+.
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHHH
Confidence 34567889999999988899999999998888876442 11 223332445555554433 23667778888888
Q ss_pred hcCCCchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHH-HhCCHhHHHHHHh--ccchHHHHHHHHhcCChhHHHhH
Q 017402 244 LTSFPENRKRVVSCGAVPILMRLADAG----LERAVEVLSI-LVKCKEGREEMMR--VSGCVGVFVKMLKTGSSRAVQCS 316 (372)
Q Consensus 244 L~~~~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~-L~~~~~~~~~i~~--~~g~i~~L~~ll~~~~~~~~~~a 316 (372)
...++.....+...+.+-.+.+.++.+ ...|...+.. |..+..--..+.. .+..+..+-.++.+++-..++.+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 888888888888888888888888655 3344444443 3445555455554 23467778888888888889999
Q ss_pred HHHHHHHhcCCHHHHHHHHh----cChhHHHHHHhhcccHHHHHHHHHHHHHHhcCC
Q 017402 317 LFTLSCLCCCSQEICGDSRK----EGVLDICMGLLEDDNEKVRRNANNLIQTLSGNP 369 (372)
Q Consensus 317 ~~~L~~l~~~~~~~~~~~~~----~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 369 (372)
+..|..+-.. +.+...|.+ ..-++.++.+|++.+..++-.|=.+.+.+.-++
T Consensus 230 lKLLgelLld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 230 LKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 9999999876 655555543 336999999999999999999999888876554
No 171
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=94.71 E-value=0.032 Score=38.13 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=36.3
Q ss_pred ccccCCcccCC-----Cceec--CCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMS-----DPVIL--SSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~-----~Pv~~--~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
-.|.||.+-.- +|.+. .|+...|+.|++--..+++..||.|+..+.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 57999998532 34333 488889999999888888999999998876
No 172
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.69 E-value=1.8 Score=44.39 Aligned_cols=207 Identities=10% Similarity=0.065 Sum_probs=117.6
Q ss_pred CChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHh---cCChHHHHHHHHHHHHhcccccchhhhccccchHHHH
Q 017402 145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALR---FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINAL 221 (372)
Q Consensus 145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~---~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~L 221 (372)
.+-..++.++.+|..++..-... ....++.++..+. .+++.++..+++++..++..-....... ..+++.|
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l 534 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLV 534 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHH
Confidence 45567888999999988662211 1344566666552 2578899999999999885422111222 3688999
Q ss_pred HHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHh--cCchHHHHHHHhhh------HHHHHHHHHHHhCC--HhHHHHH
Q 017402 222 VSLLQNGKLIREKKEAATALYALTSFPENRKRVVS--CGAVPILMRLADAG------LERAVEVLSILVKC--KEGREEM 291 (372)
Q Consensus 222 v~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~--~g~v~~L~~ll~~~------~e~a~~~L~~L~~~--~~~~~~i 291 (372)
+..+.+ . .++..|+.+|.+++.. .+..+.. .+.++.|..++..+ .+.+..+++.++.. .+.....
T Consensus 535 ~~~l~~--~-~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 535 LHALGN--P-ELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHTTC--G-GGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHhCC--c-hHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 988865 3 8999999999999842 2233321 12334444455431 45567777777653 2334333
Q ss_pred HhccchHHHHHHHHh----c-CChhHHH---hHHHHHHHHhcC-C---H------------------HHHHHHHhcChhH
Q 017402 292 MRVSGCVGVFVKMLK----T-GSSRAVQ---CSLFTLSCLCCC-S---Q------------------EICGDSRKEGVLD 341 (372)
Q Consensus 292 ~~~~g~i~~L~~ll~----~-~~~~~~~---~a~~~L~~l~~~-~---~------------------~~~~~~~~~g~~~ 341 (372)
.. ..++.+...+. . .++..+. ....+|..+... + + +.... ....+.+
T Consensus 610 ~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 686 (963)
T 2x19_B 610 LH--SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVFQ 686 (963)
T ss_dssp HH--HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHHH
Confidence 33 25555555443 2 2444444 233333333221 0 0 00111 2233566
Q ss_pred HHHHHhhc--ccHHHHHHHHHHHHHH
Q 017402 342 ICMGLLED--DNEKVRRNANNLIQTL 365 (372)
Q Consensus 342 ~l~~ll~~--~~~~v~~~a~~~L~~l 365 (372)
.+..+++. .+..+.+.+..+++.+
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~ 712 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKS 712 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHH
Confidence 66666654 4678888888888765
No 173
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.58 E-value=0.51 Score=39.66 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=78.0
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHh-hcChHHHHHHhhcCCHHHHHHHHhhcC---------CChhHHHHHHHHHhcC
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLS-KRDSASRRKLTESGAVSAVLNCLKIHS---------DGFTLQEKALSLLLNL 160 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~lL~~~~---------~~~~~~~~a~~~L~~l 160 (372)
..++.|.++. +.+.-.+-+..|+..- .....--+.| ..||+..|++.|.... .+.+.+..++.+|..+
T Consensus 4 ~yi~~L~~~~-~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkal 81 (233)
T 2f31_A 4 MYIQELRSGL-RDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 81 (233)
T ss_dssp HHHHHHTTTC-CHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-chHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 4677777653 2332233444444322 3334456667 5788999999986420 1345688888999888
Q ss_pred CCCccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhccccc
Q 017402 161 SLDDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV 206 (372)
Q Consensus 161 ~~~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~ 206 (372)
.....+...+.+ .+++..++..|.+.++.++..+...|..++..++
T Consensus 82 mn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~ 128 (233)
T 2f31_A 82 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 128 (233)
T ss_dssp TSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSS
T ss_pred hCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCC
Confidence 777666665554 6789999999988899999999999988886653
No 174
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.53 E-value=0.024 Score=50.36 Aligned_cols=63 Identities=19% Similarity=0.361 Sum_probs=49.8
Q ss_pred CccccCCcccCCCcee-cCCchH--hhHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCccHHHHHHHHH
Q 017402 8 DFKCPISLEIMSDPVI-LSSGHT--FDRASIQRWLD-SGHRTCPITKLPLPDQPSLIPNHALRSLISN 71 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~-~~cgh~--~c~~ci~~~~~-~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~ 71 (372)
.+.||+....|+.|+. ..|.|. |+..-+..... .+...||.|++... ..++..+..+...+..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~-~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA-YESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC-GGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC-HHHeEEcHHHHHHHHh
Confidence 5789999999999996 569997 66655544443 34578999999998 8889988888877654
No 175
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.25 E-value=0.36 Score=42.51 Aligned_cols=183 Identities=12% Similarity=0.104 Sum_probs=134.7
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcC-CCCccccc
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNL-SLDDDNKV 168 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l-~~~~~~~~ 168 (372)
|+++..|-++-++++.-..+-..|+...+ .+...+.+...+.+..+++.+. ..+-++...|..++..+ ..+.....
T Consensus 124 peil~~L~~gYe~~diAl~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~--~~~FdiasDAf~TfkelLt~Hk~lva 200 (341)
T 1upk_A 124 QNILFMLLKGYESPEIALNCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVE--MSTFDIASDAFATFKDLLTRHKLLSA 200 (341)
T ss_dssp THHHHHHHHGGGSTTTHHHHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTT--CSSHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHhhccchhHhHHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhc--CCCchHHHHHHHHHHHHHhccHHHHH
Confidence 67888888777788888888888888877 5667777778777888888888 78889999999998875 34433322
Q ss_pred ccccc---CChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhh---hccccchHHHHHHHhhcCCchHHHHHHHHHHH
Q 017402 169 GLVAE---GAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKAT---IGDYPYAINALVSLLQNGKLIREKKEAATALY 242 (372)
Q Consensus 169 ~i~~~---g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~---i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~ 242 (372)
.+... ..+...-++|.+++.-++.++...|+.+-.+..|... .+....-+..++.+|++.+. .++-+|..+..
T Consensus 201 efL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk-~Iq~EAFhVFK 279 (341)
T 1upk_A 201 EFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSR-NIQFEAFHVFK 279 (341)
T ss_dssp HHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCH-HHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchh-chhhhhhhhee
Confidence 33332 3566777888999999999999999999887765433 23336789999999999877 89999999887
Q ss_pred hhcCCCchhHHHHhcCchHHHHHHHhhhHHHHHHHHHHHhCCH
Q 017402 243 ALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCK 285 (372)
Q Consensus 243 ~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~a~~~L~~L~~~~ 285 (372)
-...++. --+++.++|...+++.+..|.++-.+.
T Consensus 280 vFVANP~---------K~~~I~~IL~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 280 VFVANPN---------KTQPILDILLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HHHHCSS---------CCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred eeeeCCC---------CChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6555543 223445555555677777777776543
No 176
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.17 E-value=1.1 Score=39.62 Aligned_cols=133 Identities=13% Similarity=0.093 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHh-
Q 017402 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALR- 184 (372)
Q Consensus 106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~- 184 (372)
..+++..| +|...+...-+.+++.+|+..+...+. ..+.++...+.+.|...+....... .--...+|.+++.++
T Consensus 260 vtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~Tvin--YpN~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 260 IIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQ--YPNNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhcccccccceeecccceeEEEEee--cCCcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhcc
Confidence 34444444 455556668899999999999999999 8999999999999998875433222 112467888888886
Q ss_pred cCChHHHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhcC------CchHHHHHHHHHHHh
Q 017402 185 FGSPDCRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQNG------KLIREKKEAATALYA 243 (372)
Q Consensus 185 ~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~------~~~~~~~~a~~aL~~ 243 (372)
+++.++.-...+.|.|...+. ..|+.... .|+|+.|-..+... .+..-++.|++.++|
T Consensus 336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~-~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIR-SNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCHHHHHHHHH-TTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred CCCcceEEecchHHHHHHhcccchHHHHhc-cCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 578999999999999997766 45555444 59999998876532 233445555554443
No 177
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.59 E-value=0.46 Score=41.01 Aligned_cols=181 Identities=16% Similarity=0.162 Sum_probs=109.7
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHH--HHHH-hhc-CCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCc---
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSAS--RRKL-TES-GAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDD--- 164 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~i-~~~-g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~--- 164 (372)
+-+.|.+. +...|.+|+..|..+....+.. .... ... ...+.+-..+. +.+..++..++.+|..++..-
T Consensus 14 l~e~l~sk--~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~--DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 14 LEERLTYK--LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT--DSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp HHHHTTCS--SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT--CSSHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHhcccC--cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhhhh
Confidence 55677765 8999999999999887643311 1111 112 23555667777 789999999999988765431
Q ss_pred ccccc---ccccCChHHHHHH-HhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHH
Q 017402 165 DNKVG---LVAEGAVSRVVAA-LRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATA 240 (372)
Q Consensus 165 ~~~~~---i~~~g~i~~lv~~-L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~a 240 (372)
..... ..-...++.|+.- |.+....++..+..++..+...... . ...++.++..+...++ .++..++..
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~-~~~~e~l~~~l~~Knp-kv~~~~l~~ 162 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----I-TQSVELVIPFFEKKLP-KLIAAAANC 162 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----S-HHHHHHHGGGGGCSCH-HHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----H-HHHHHHHHHHHhccCH-HHHHHHHHH
Confidence 11111 1123466777765 6667788888888888777532211 1 2356677777777776 888888888
Q ss_pred HHhhcCC--Cc--hhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHhCC
Q 017402 241 LYALTSF--PE--NRKRVVSCGAVPILMRLADAG----LERAVEVLSILVKC 284 (372)
Q Consensus 241 L~~L~~~--~~--~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~ 284 (372)
|..+-.. .. +....+. .+++.+..++.+. ++.|..++..+-..
T Consensus 163 l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 8876431 11 1111111 2344556666433 66777777777653
No 178
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.57 E-value=0.22 Score=47.06 Aligned_cols=183 Identities=10% Similarity=0.081 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccc-ccCChHHHHH
Q 017402 103 LESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLV-AEGAVSRVVA 181 (372)
Q Consensus 103 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~lv~ 181 (372)
..+|+.+++.|..+ ..-+.. ..++..|+..+. ...=+++..++-.|..+ +..+. -.++++.++.
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~--~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~ 306 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLD--SGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVS 306 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGG--CSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcC--CCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHh
Confidence 35788888888887 533321 344555554445 45667889999999888 22121 2667888888
Q ss_pred HHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCc-hHHHHHHHHHHHhhcCCCchhHHHHhcCch
Q 017402 182 ALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKL-IREKKEAATALYALTSFPENRKRVVSCGAV 260 (372)
Q Consensus 182 ~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~-~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v 260 (372)
-|++.+.+++..|+.+|.-++ . .. ....++..+-+.|.+.++ ..........|+.|+..+.+ .......|
T Consensus 307 GL~D~DDDVRAVAAetLiPIA-~---p~---~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LV 377 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP-I---TD---SLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERL 377 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC-C---SS---THHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGG
T ss_pred hcCCcccHHHHHHHHHhhhhc-c---hh---hHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHH
Confidence 888899999999999999998 1 11 112455555566655433 24555566677777765531 11122677
Q ss_pred HHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHH-HHHHhcCChhHHHhHHHHH
Q 017402 261 PILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVF-VKMLKTGSSRAVQCSLFTL 320 (372)
Q Consensus 261 ~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L-~~ll~~~~~~~~~~a~~~L 320 (372)
|.|...+.+. +..++.+|..+.. ...+..+ ..+|-..++.+++.+..+.
T Consensus 378 PRL~PFLRHtITSVR~AVL~TL~tfL~-----------~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 378 KDIFPCFTSPVPEVRTSILNMVKNLSE-----------ESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGTGGGGTCSSHHHHHHHHHHTTTCCC-----------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 7788888665 5667777766661 1223322 2333455666666666554
No 179
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.36 E-value=1.1 Score=37.53 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=97.0
Q ss_pred cCChHHHHHHHhc----C-------ChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHH
Q 017402 173 EGAVSRVVAALRF----G-------SPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATAL 241 (372)
Q Consensus 173 ~g~i~~lv~~L~~----~-------~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL 241 (372)
.+|+..|+..|.. + +......+...|..+..+......+....+++..|+..+.+... .++..++..|
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~-~~r~~~leLL 120 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-NMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSH-HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCc-hHHHHHHHHH
Confidence 4677777777743 1 24455667788888776555666665557899999999977766 8999999999
Q ss_pred HhhcCCCchhHHHHhcCchHHHHHHHhhhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHH
Q 017402 242 YALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTL 320 (372)
Q Consensus 242 ~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L 320 (372)
..+|..++. .|..+.+++.++. ... ..+ ..-+..+++.+.. .+...+..++..+
T Consensus 121 ~~lc~~~~~------~G~~~~VL~Al~~-----------~~~-------~~e-~~RF~~lv~~l~~~~~~e~~~~~m~lI 175 (233)
T 2f31_A 121 SALCILPQP------EDMNERVLEAMTE-----------RAE-------MDE-VERFQPLLDGLKSGTSIALKVGCLQLI 175 (233)
T ss_dssp HHHHTCSSS------SCHHHHHHHHHHH-----------HHH-------HHT-SCTTHHHHHTTSTTSCHHHHHHHHHHH
T ss_pred HHHHhCCCC------CChHHHHHHHHHH-----------HHH-------hCC-cchHHHHHHHHhcCChHHHHHHHHHHH
Confidence 999986641 1113333333332 111 111 2345566666654 3334444444444
Q ss_pred HHHhcCCH------HHHHHHHhcChhHHHHHHhhcccHHHHHHHH
Q 017402 321 SCLCCCSQ------EICGDSRKEGVLDICMGLLEDDNEKVRRNAN 359 (372)
Q Consensus 321 ~~l~~~~~------~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~ 359 (372)
=.+....+ ..|.++...|..+.+-.+-..+++.+..+-.
T Consensus 176 N~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 176 NALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence 44443322 4566777888777776665556777665543
No 180
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.29 E-value=1.9 Score=39.06 Aligned_cols=163 Identities=14% Similarity=0.067 Sum_probs=99.6
Q ss_pred cccccccCChHHHHHHHhc-----------CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHH
Q 017402 167 KVGLVAEGAVSRVVAALRF-----------GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKK 235 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L~~-----------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 235 (372)
-..+. .+|+..|+.+|.. .+......+...|..+.-+..+...+......|..|+..+.+... .++.
T Consensus 103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~-~~~~ 180 (383)
T 3eg5_B 103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-NMMI 180 (383)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSH-HHHH
T ss_pred HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCch-HHHH
Confidence 34555 7788999998852 134566677788888876555666665557899999999988776 8999
Q ss_pred HHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHH
Q 017402 236 EAATALYALTSFPENRKRVVSCGAVPILMRLADAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQ 314 (372)
Q Consensus 236 ~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~ 314 (372)
.|+..|..+|..++. .|+.+.+++.++ ++.. ..+ ..-+..++..+.. .+...+.
T Consensus 181 ~aleLL~~lc~~~~~------~gG~~~VL~Al~-----------~~~~-------~~e-~~RF~~lv~~L~~~~~~e~~~ 235 (383)
T 3eg5_B 181 DAAKLLSALCILPQP------EDMNERVLEAMT-----------ERAE-------MDE-VERFQPLLDGLKSGTSIALKV 235 (383)
T ss_dssp HHHHHHHHHHTCCSS------TTHHHHHHHHHH-----------HHHH-------HHT-SCTTHHHHHTTSTTSCHHHHH
T ss_pred HHHHHHHHHHhCcCc------CCcHHHHHHHHH-----------HHHH-------hCC-CCcHHHHHHHHHccCcHHHHH
Confidence 999999999986641 122333333332 2211 011 3345666666655 3445555
Q ss_pred hHHHHHHHHhcCCH------HHHHHHHhcChhHHHHHHhhcccHHHHH
Q 017402 315 CSLFTLSCLCCCSQ------EICGDSRKEGVLDICMGLLEDDNEKVRR 356 (372)
Q Consensus 315 ~a~~~L~~l~~~~~------~~~~~~~~~g~~~~l~~ll~~~~~~v~~ 356 (372)
.++..+=.+....+ ..|.++.+.|..+.+-.+-..+++.+..
T Consensus 236 ~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 236 GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 283 (383)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence 55544444444322 4456677788777666644434554443
No 181
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.86 E-value=3.1 Score=42.70 Aligned_cols=173 Identities=8% Similarity=0.118 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc---------ccccccc
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD---------NKVGLVA 172 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~---------~~~~i~~ 172 (372)
.+-+|..|++.|..++..-. .+.+ ...++.++..|. +.+..++..|+.+|.+++...+ .+..+..
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~--~~~l--~~~l~~l~~~L~--d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p 544 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQ--TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred CceehHHHHHHHHHHHhhCC--HHHH--HHHHHHHHHHhC--CCChhHHHHHHHHHHHHHhcccccccccccccHHHhhh
Confidence 67899999999999987421 1222 235777888887 6778899999999999876422 1233322
Q ss_pred --cCChHHHHHHHhcCC---hH--HHHHHHHHHHHhcccc-cchhhhccccchHHHHHHHhhc----CCchHHHHHHHHH
Q 017402 173 --EGAVSRVVAALRFGS---PD--CRAIAATIITSLAVVE-VNKATIGDYPYAINALVSLLQN----GKLIREKKEAATA 240 (372)
Q Consensus 173 --~g~i~~lv~~L~~~~---~~--~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~----~~~~~~~~~a~~a 240 (372)
...++.|..++.... .. ....+..+|..+.... +.-.... ...++.|+..+.. ++++.....++.+
T Consensus 545 ~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~ 622 (960)
T 1wa5_C 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFES 622 (960)
T ss_dssp THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 345556666666541 11 2234555555543322 1111111 2456666655543 3344566667888
Q ss_pred HHhhcCC-CchhHHHHhcCchHHHHHHHhhh----HHHHHHHHHHHh
Q 017402 241 LYALTSF-PENRKRVVSCGAVPILMRLADAG----LERAVEVLSILV 282 (372)
Q Consensus 241 L~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~----~e~a~~~L~~L~ 282 (372)
|..+... ......-++...+|.+...|... .+.+..++..+.
T Consensus 623 l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 623 IGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 8877654 22222223444677777777443 455555555443
No 182
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.47 E-value=0.91 Score=38.83 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=109.9
Q ss_pred hhHHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHH--hhcCCChhHHHHHHHHHhcCCCC---c
Q 017402 90 QTLISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCL--KIHSDGFTLQEKALSLLLNLSLD---D 164 (372)
Q Consensus 90 ~~li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~~~~~~~a~~~L~~l~~~---~ 164 (372)
+++...|-+. +...+.+|+..|......++ ...+. .+..+++-+ +-.+.+..+...++.+|..+... .
T Consensus 49 ~~~~~~lfs~--d~k~~~~ale~L~~~l~~~~--~~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~ 121 (266)
T 2of3_A 49 VSLMSQLFHK--DFKQHLAALDSLVRLADTSP--RSLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT 121 (266)
T ss_dssp HHHHHHHTCS--CHHHHHHHHHHHHHHHHHCH--HHHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHhhhCh--HHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666554 77888899999988766443 22222 222333311 11256888888888888776322 2
Q ss_pred cccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402 165 DNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA 243 (372)
Q Consensus 165 ~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~ 243 (372)
+.+..-.+ .-.+|.|+.-+.++...+|..+-.++..+... .....+++.+++-+++.+. .++..++..+..
T Consensus 122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~-R~R~e~l~~l~~ 193 (266)
T 2of3_A 122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNA-RQRSECLLVIEY 193 (266)
T ss_dssp TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCH-HHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCH-HHHHHHHHHHHH
Confidence 22221112 34789999999888888999888888776522 2213578888888888876 999999888887
Q ss_pred hcCCCchhHHHHhcCch---HHHHHHHhhh----HHHHHHHHHHHhC
Q 017402 244 LTSFPENRKRVVSCGAV---PILMRLADAG----LERAVEVLSILVK 283 (372)
Q Consensus 244 L~~~~~~~~~i~~~g~v---~~L~~ll~~~----~e~a~~~L~~L~~ 283 (372)
+-..... . ...++ +.+.+++.+. ++.|+.++..+-.
T Consensus 194 li~~~G~-~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 194 YITNAGI-S---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHCS-G---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhcCC-C---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 6432111 1 23467 8888888433 5666666654443
No 183
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.28 E-value=0.014 Score=49.61 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=27.0
Q ss_pred HHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHH
Q 017402 299 GVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLI 362 (372)
Q Consensus 299 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L 362 (372)
+.|..++.+.+..++..++..+ | .+.|..+ ++.+..||..|...|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l-----------------~-~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHA-----------------S-LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHS-----------------C-HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcC-----------------C-HHHHHHc-cCCCHHHHHHHHHHh
Confidence 3444445555555555555442 1 4556666 888899998887543
No 184
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.99 E-value=1.8 Score=37.16 Aligned_cols=181 Identities=13% Similarity=0.103 Sum_probs=104.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhccccc---chhh-hccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC---ch-
Q 017402 179 VVAALRFGSPDCRAIAATIITSLAVVEV---NKAT-IGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFP---EN- 250 (372)
Q Consensus 179 lv~~L~~~~~~~~~~a~~~L~~ls~~~~---~~~~-i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~---~~- 250 (372)
+-.-|.+.+=..|..|...|..+..... .... +.......+.+-+.+.+.+. .+...++.+|..++..- ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~-~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV-VAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH-HHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHhhhhhcc
Confidence 4466677777788888877766543211 1111 11112344555567766666 88999999998876521 11
Q ss_pred hHH--HHhcCchHHHHHH-Hhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHH
Q 017402 251 RKR--VVSCGAVPILMRL-ADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCL 323 (372)
Q Consensus 251 ~~~--i~~~g~v~~L~~l-l~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 323 (372)
+.. ..-...++.|+.- +.+. ++.+..++..++...... ...++.+...+.+.++.++..++..|..+
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 111 1223456666654 4332 455666665554321111 11344555566778999999888888876
Q ss_pred hcC-CHHH--HHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 324 CCC-SQEI--CGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 324 ~~~-~~~~--~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
... +... ....+. .+++.+..++.+.++.||..|..++-.+-.
T Consensus 167 l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 432 1211 111122 367778888999999999999999865543
No 185
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.05 E-value=3.8 Score=37.17 Aligned_cols=144 Identities=16% Similarity=0.084 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHH
Q 017402 188 PDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLA 267 (372)
Q Consensus 188 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll 267 (372)
......+...|..+.-+..+...+....+++..|+..+.+... .++..++..|..+|..++. .|..+.+++.+
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~-~~r~~vleLL~alc~~~~~------~G~~~~VL~Al 144 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-NMMIDAAKLLSALCILPQP------EDMNERVLEAM 144 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH-HHHHHHHHHHHHHHTCCSS------TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHcCCCC------CChHHHHHHHH
Confidence 4455667777777765555555555546889999999877666 8999999999999986541 02123333333
Q ss_pred hhhHHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCH------HHHHHHHhcChh
Q 017402 268 DAGLERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQ------EICGDSRKEGVL 340 (372)
Q Consensus 268 ~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~g~~ 340 (372)
+ +.. ...+ ..-+..|++.+.. .+...+..++..+=.+....+ ..|.++...|..
T Consensus 145 ~-----------~~~-------~~~e-~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 145 T-----------ERA-------EMDE-VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp H-----------HHH-------HHHT-SCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred H-----------HHH-------HhCc-hhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 2 221 1111 3345667777653 344445555544444444322 456677888877
Q ss_pred HHHHHHhhcccHHHHHH
Q 017402 341 DICMGLLEDDNEKVRRN 357 (372)
Q Consensus 341 ~~l~~ll~~~~~~v~~~ 357 (372)
+.+-.+-..+++.+..+
T Consensus 206 ~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 206 QVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHTTCCCHHHHHH
T ss_pred HHHHHHhccCChhHHHH
Confidence 77665555456655544
No 186
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.66 E-value=4 Score=37.04 Aligned_cols=175 Identities=17% Similarity=0.136 Sum_probs=103.7
Q ss_pred chhHHHHhhccCCChHHHHHHHHHHHHHhh-cChHHHHHHhhcCCHHHHHHHHhhc---------CCChhHHHHHHHHHh
Q 017402 89 PQTLISVLTSKSSPLESKLESLTQLTKLSK-RDSASRRKLTESGAVSAVLNCLKIH---------SDGFTLQEKALSLLL 158 (372)
Q Consensus 89 ~~~li~~L~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~---------~~~~~~~~~a~~~L~ 158 (372)
+...|..|.++. ..+.-.+.+..|+-.-. ....--+.|. .+|+..|+.+|... ..+...+..++++|.
T Consensus 6 P~~yv~~L~~~~-~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLk 83 (386)
T 2bnx_A 6 AMMYIQELRSGL-RDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK 83 (386)
T ss_dssp HHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-chHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence 345778887763 23222234444443323 2344566664 68899999888641 013456888889998
Q ss_pred cCCCCccccccccc-cCChHHHHHHHhcCChHHHHHHHHHHHHhccccc--c-hhhhcc---------ccchHHHHHHHh
Q 017402 159 NLSLDDDNKVGLVA-EGAVSRVVAALRFGSPDCRAIAATIITSLAVVEV--N-KATIGD---------YPYAINALVSLL 225 (372)
Q Consensus 159 ~l~~~~~~~~~i~~-~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~--~-~~~i~~---------~~g~i~~Lv~ll 225 (372)
.+.....+...+.. .+++..++..|.+.++.++..++.+|..++..++ + ...+.. ...-+..|++.+
T Consensus 84 almN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l 163 (386)
T 2bnx_A 84 AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 163 (386)
T ss_dssp HHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHT
T ss_pred HHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 88777666555554 6789999999988889999999988888876553 2 222211 022445577777
Q ss_pred hcCCchHHHHHHHHHHHh-hcCCCc-------hhHHHHhcCchHHHHHHH
Q 017402 226 QNGKLIREKKEAATALYA-LTSFPE-------NRKRVVSCGAVPILMRLA 267 (372)
Q Consensus 226 ~~~~~~~~~~~a~~aL~~-L~~~~~-------~~~~i~~~g~v~~L~~ll 267 (372)
.+....+.+ .++..+.| +...++ .|..+...|..+.+ .-+
T Consensus 164 ~~~~~~e~~-~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~L 211 (386)
T 2bnx_A 164 KSGTSIALK-VGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QEL 211 (386)
T ss_dssp STTSCHHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHH
T ss_pred HcCChHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHH
Confidence 655442443 44444444 444333 33444455555444 444
No 187
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=90.36 E-value=3.9 Score=37.90 Aligned_cols=75 Identities=24% Similarity=0.260 Sum_probs=57.8
Q ss_pred hcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHH
Q 017402 184 RFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPIL 263 (372)
Q Consensus 184 ~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L 263 (372)
..++...+..|+..|...-..-.. .. ..+|..++.+..+.+. .++..|.+.|..+|.+ +...++ ++.|
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~---l~--~~Ai~a~lDLcEDed~-~IR~qaik~Lp~~ck~-~~i~ki-----aDvL 105 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPE---LA--DSAINAQLDLCEDEDV-SIRRQAIKELPQFATG-ENLPRV-----ADIL 105 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGG---GH--HHHHHHHHHHHTCSSH-HHHHHHHHHGGGGCCT-TCHHHH-----HHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChh---hH--HHHHHHHHHHHhcccH-HHHHHHHHhhHHHhhh-hhhhhH-----HHHH
Confidence 356899999999999887544322 22 2689999999999888 9999999999999988 554443 4678
Q ss_pred HHHHhhh
Q 017402 264 MRLADAG 270 (372)
Q Consensus 264 ~~ll~~~ 270 (372)
+++|.+.
T Consensus 106 ~QlLqtd 112 (507)
T 3u0r_A 106 TQLLQTD 112 (507)
T ss_dssp HHHTTCC
T ss_pred HHHHhcc
Confidence 8888544
No 188
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.55 E-value=4.7 Score=41.70 Aligned_cols=135 Identities=5% Similarity=-0.051 Sum_probs=80.3
Q ss_pred CChhHHHHHHHHHhcCCCCccc-cccccccCChHHHHHHHhc-----CChHHHHHHHHHHHHhcccccchhhhccccchH
Q 017402 145 DGFTLQEKALSLLLNLSLDDDN-KVGLVAEGAVSRVVAALRF-----GSPDCRAIAATIITSLAVVEVNKATIGDYPYAI 218 (372)
Q Consensus 145 ~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~lv~~L~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i 218 (372)
.+=..++.++.+++.++..... .+.-.=..+++.|+.++.+ ....++..++++|+..+.--....... ..++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 3456789999999999876332 1211124567778887764 123345567788887764322222221 2466
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHh------cCchHHHHHHHhh-------h-HHHHHHHHHHHhCC
Q 017402 219 NALVSLLQNGKLIREKKEAATALYALTSFPENRKRVVS------CGAVPILMRLADA-------G-LERAVEVLSILVKC 284 (372)
Q Consensus 219 ~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~------~g~v~~L~~ll~~-------~-~e~a~~~L~~L~~~ 284 (372)
..|++.+.+.++ .+...|++++.+||. +.+..++. ...++.++..+.. . ...+..+++.+...
T Consensus 543 ~~L~~~l~~~~~-~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHE-GVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCH-HHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCH-HHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666666655555 799999999999995 34455542 1234555544421 1 44566667766663
No 189
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.16 E-value=0.27 Score=32.83 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=28.5
Q ss_pred CCCccccCCcccCCCceecC----CchHhhHHHHHHHHhc
Q 017402 6 PDDFKCPISLEIMSDPVILS----SGHTFDRASIQRWLDS 41 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~----cgh~~c~~ci~~~~~~ 41 (372)
...+.|.+|.+.+.|.-... -+|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 45689999999999885443 3699999998887753
No 190
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.06 E-value=11 Score=34.97 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=71.5
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccccccccc
Q 017402 94 SVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAE 173 (372)
Q Consensus 94 ~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 173 (372)
..|....++...+.=|.+.|.++...-|+..+. .+..++++.. +.+..+|..|++.|-.++.+ ++- .
T Consensus 33 ~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcE--Ded~~IR~qaik~Lp~~ck~-~~i-----~ 99 (507)
T 3u0r_A 33 VILDGVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCE--DEDVSIRRQAIKELPQFATG-ENL-----P 99 (507)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHT--CSSHHHHHHHHHHGGGGCCT-TCH-----H
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh--cccHHHHHHHHHhhHHHhhh-hhh-----h
Confidence 344443447788888999998888877765443 5778999999 88999999999999999987 332 3
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 017402 174 GAVSRVVAALRFGSPDCRAIAATIITSLAV 203 (372)
Q Consensus 174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~ 203 (372)
.+.+.|+++|..++.......-.+|..+-.
T Consensus 100 kiaDvL~QlLqtdd~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 100 RVADILTQLLQTDDSAEFNLVNNALLSIFK 129 (507)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 346778888888776666655566655543
No 191
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.04 E-value=7.9 Score=32.99 Aligned_cols=168 Identities=12% Similarity=0.084 Sum_probs=95.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHh----hcCCchHHHHHHHHHHHhhcC---CCchh
Q 017402 179 VVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL----QNGKLIREKKEAATALYALTS---FPENR 251 (372)
Q Consensus 179 lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll----~~~~~~~~~~~a~~aL~~L~~---~~~~~ 251 (372)
+...|-+.|..-+..|+..|...... +...+. ..++.+++.+ .+.+. .+...++.+|..+.. ..+.+
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~---~~lDll~kw~~lr~~d~N~-~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADT--SPRSLL---SNSDLLLKWCTLRFFETNP-AALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHH---HTHHHHHHHHHHHTTSCCH-HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHH---HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHhcccc
Confidence 44444455666666666666654321 222221 1233344433 24444 677777777766532 11111
Q ss_pred HHHHhc-CchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402 252 KRVVSC-GAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCC 326 (372)
Q Consensus 252 ~~i~~~-g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 326 (372)
..-.++ -.+|.|+.-+.++ ++.+-.++..++. +..-...++.++.-+++.+.+.++.++..+..+-..
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 111111 2457777766333 4555555555543 112123556667777788899999888888876432
Q ss_pred -CHHHHHHHHhcChh---HHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 327 -SQEICGDSRKEGVL---DICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 327 -~~~~~~~~~~~g~~---~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
+.. ...++ +.+..++.+.+..||.+|..++-.+
T Consensus 198 ~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 198 AGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 112 23467 9999999999999999999888643
No 192
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=88.96 E-value=7.9 Score=40.86 Aligned_cols=129 Identities=15% Similarity=0.116 Sum_probs=80.8
Q ss_pred hccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC------ccccccc
Q 017402 97 TSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD------DDNKVGL 170 (372)
Q Consensus 97 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~------~~~~~~i 170 (372)
-+++++.+.|.+|-..|..+-.. + +++..+...|.+.+.+..++..|+.+|.+.... ++.+..|
T Consensus 21 ~~p~~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I 90 (1204)
T 3a6p_A 21 MDPNSTQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL 90 (1204)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH
T ss_pred hCCCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 34444667788888888776442 2 245555554432256788999999999885421 2222222
Q ss_pred cccCChHHHHHHHhc-------CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHh
Q 017402 171 VAEGAVSRVVAALRF-------GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYA 243 (372)
Q Consensus 171 ~~~g~i~~lv~~L~~-------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~ 243 (372)
+ ..++..+.. ....++...+.++..++..+-.. .-.+.++.|+.++.++ . .....++.+|..
T Consensus 91 -r----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~~-~-~~~e~~L~iL~~ 159 (1204)
T 3a6p_A 91 -K----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQG-E-TQTELVMFILLR 159 (1204)
T ss_dssp -H----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHTC-H-HHHHHHHHHHHH
T ss_pred -H----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcCC-H-HHHHHHHHHHHH
Confidence 2 334444432 35778888899999988765221 1247899999998763 3 457778888877
Q ss_pred hcC
Q 017402 244 LTS 246 (372)
Q Consensus 244 L~~ 246 (372)
|+.
T Consensus 160 L~E 162 (1204)
T 3a6p_A 160 LAE 162 (1204)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 193
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=88.64 E-value=5.1 Score=41.23 Aligned_cols=206 Identities=14% Similarity=0.071 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhcCCCC-ccccccc-c----ccCChHHHHHHHh-----cCChHHHHHHHHHHHHhcccccchhhhccccc
Q 017402 148 TLQEKALSLLLNLSLD-DDNKVGL-V----AEGAVSRVVAALR-----FGSPDCRAIAATIITSLAVVEVNKATIGDYPY 216 (372)
Q Consensus 148 ~~~~~a~~~L~~l~~~-~~~~~~i-~----~~g~i~~lv~~L~-----~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g 216 (372)
..+|.++.+|..++.. ..+...+ . -...++.+..+++ ..++.++..+++++...+..-.. . ..
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-----~-~~ 531 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-----E-SA 531 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-----C-CT
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-----C-ch
Confidence 3579999999998876 2211111 0 1124555566655 45788999999999988754322 1 34
Q ss_pred hHHHHHHHhhc------CCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHHHHhhh--------------------
Q 017402 217 AINALVSLLQN------GKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMRLADAG-------------------- 270 (372)
Q Consensus 217 ~i~~Lv~ll~~------~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-------------------- 270 (372)
.++.++..+-+ ++. .++..|+.++.+++..- +..+. +.++.++..+..-
T Consensus 532 ~l~~~L~~ll~~~gl~~~~~-~V~~~a~~af~~f~~~~--~~~L~--~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 532 AIPALIEYFVGPRGIHNTNE-RVRPRAWYLFYRFVKSI--KKQVV--NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp THHHHHHHHTSTTTTTCCCT-TTHHHHHHHHHHHHHHT--TTTCS--SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred hHHHHHHHHhccccccCCCh-hHHHHHHHHHHHHHHHh--hHHhh--hHHHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 55555555444 344 79999999999998632 22221 3444455444110
Q ss_pred ---------HHHHHHHHHHHh---C-CHhHHHHHHhccchHHHHHHHHh----cC----ChhHH-HhHHHHHHHHhcCCH
Q 017402 271 ---------LERAVEVLSILV---K-CKEGREEMMRVSGCVGVFVKMLK----TG----SSRAV-QCSLFTLSCLCCCSQ 328 (372)
Q Consensus 271 ---------~e~a~~~L~~L~---~-~~~~~~~i~~~~g~i~~L~~ll~----~~----~~~~~-~~a~~~L~~l~~~~~ 328 (372)
+-....+++.|. . ..+.+...+. ..++++..-+. .. .+..+ .+.+.++..+++..+
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~--~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~ 684 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD--SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFP 684 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH--HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSC
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCC
Confidence 011334444443 2 2334444444 24555444332 21 11111 245666677776532
Q ss_pred HH------HHHHHhcChhHHHHHHhh--cccHHHHHHHHHHHHHHhc
Q 017402 329 EI------CGDSRKEGVLDICMGLLE--DDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 329 ~~------~~~~~~~g~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~ 367 (372)
+. ...+.. .+.+.++..+. ..+..+|++++.+++.+-.
T Consensus 685 ~~~~~~~p~~~~f~-~~~~~il~~l~~~~~~~~irea~~~~~~r~i~ 730 (980)
T 3ibv_A 685 ARGSEEVAWLASFN-KASDEIFLILDRMGFNEDIRGAVRFTSGRIIN 730 (980)
T ss_dssp SCC-CCCSHHHHHH-HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred cccCCCCcHHHHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 21 111111 24566666666 4688999999999987654
No 194
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=88.56 E-value=12 Score=38.30 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=77.5
Q ss_pred CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHh---hcC-CchHHHHHHHHHHHhhcCCC-chhHHHHhcCch
Q 017402 186 GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLL---QNG-KLIREKKEAATALYALTSFP-ENRKRVVSCGAV 260 (372)
Q Consensus 186 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll---~~~-~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v 260 (372)
.+-..++.++.++..++..-.... ...++.++.++ ... ..+.++..++++|..++..- ++...+ . .++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~-~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-P-PAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-H-HHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-H-HHH
Confidence 355678888899998875432211 12344444333 211 23489999999999887531 111111 1 234
Q ss_pred HHHHHHHhhh-HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhc--CChhHHHhHHHHHHHHhcC
Q 017402 261 PILMRLADAG-LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKT--GSSRAVQCSLFTLSCLCCC 326 (372)
Q Consensus 261 ~~L~~ll~~~-~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~ 326 (372)
+.|+..++.. ...|+.++.+++. +.+..+.. -+..+..|..++.+ .+...+..+..++..++..
T Consensus 549 ~~l~~~l~~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 549 NLLVRGLNSSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhChHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 4555555422 7889999999995 33444433 13466677777776 3567788888888888754
No 195
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=87.83 E-value=13 Score=37.92 Aligned_cols=170 Identities=12% Similarity=0.106 Sum_probs=97.0
Q ss_pred CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhc-C-CchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHH
Q 017402 186 GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN-G-KLIREKKEAATALYALTSFPENRKRVVSCGAVPIL 263 (372)
Q Consensus 186 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~-~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L 263 (372)
.+-..++.++.++..++..-... . ...++.++..+.. . +.+.++..++++|...+..-........ .+++.+
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~----~-~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~-~vl~~l 534 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVN----Y-SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN-SVLPLV 534 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSS----C-CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-TTHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCch----h-hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHH
Confidence 45667888999999988543221 1 2345555554422 1 2347899999999988753211112222 477777
Q ss_pred HHHHhhh--HHHHHHHHHHHhCCHhHHHHHHh-ccchHHHHHHHHhc--CChhHHHhHHHHHHHHhcCCH-HHHHHHHhc
Q 017402 264 MRLADAG--LERAVEVLSILVKCKEGREEMMR-VSGCVGVFVKMLKT--GSSRAVQCSLFTLSCLCCCSQ-EICGDSRKE 337 (372)
Q Consensus 264 ~~ll~~~--~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~ 337 (372)
+..|.+. +..|+.++.+++. ..+..+.. -+..+..|..++.. .+...+.....++..++...+ +......+.
T Consensus 535 ~~~l~~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~ 612 (963)
T 2x19_B 535 LHALGNPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHS 612 (963)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHhCCchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777544 6789999999985 22332322 12345556666664 356778888888888876433 444333332
Q ss_pred ChhHHHHHHhh----c-ccHHHHHHHHHHHHH
Q 017402 338 GVLDICMGLLE----D-DNEKVRRNANNLIQT 364 (372)
Q Consensus 338 g~~~~l~~ll~----~-~~~~v~~~a~~~L~~ 364 (372)
+++.+...++ + .+++.+.....++..
T Consensus 613 -l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 643 (963)
T 2x19_B 613 -LISPYIQQLEKLAEEIPNPSNKLAIVHILGL 643 (963)
T ss_dssp -HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4444444332 2 255555544444433
No 196
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.04 E-value=22 Score=36.79 Aligned_cols=141 Identities=6% Similarity=-0.033 Sum_probs=79.9
Q ss_pred CChHHHHHHHHHHHHHhhcChHH--HHHHhhcCCHHHHHHHHhhcCC-Chh--HHHHHHHHHhcCCCC-ccccccccccC
Q 017402 101 SPLESKLESLTQLTKLSKRDSAS--RRKLTESGAVSAVLNCLKIHSD-GFT--LQEKALSLLLNLSLD-DDNKVGLVAEG 174 (372)
Q Consensus 101 ~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~g~i~~L~~lL~~~~~-~~~--~~~~a~~~L~~l~~~-~~~~~~i~~~g 174 (372)
.+...+..++.+++.++..-.+. ...+. .+++.|+.++....+ ++. ++..++.+|+..+.- ..+.. + =..
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~-L~~ 540 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-LRT 540 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-H-HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-H-HHH
Confidence 46788999999999988653222 22222 356777777752111 222 445677888876532 11111 1 022
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhc-----cccchHHHHH----HHhhcCCchHHHHHHHHHHHhhc
Q 017402 175 AVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIG-----DYPYAINALV----SLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 175 ~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~-----~~~g~i~~Lv----~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
.+..|+..+..+++.++..|++++.+++..- +..+. +....++.++ ..+..-.. .....+..++..+.
T Consensus 541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c--~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~-~~~~~lyeai~~vi 617 (1023)
T 4hat_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQP-QQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH--HHHhhccCCCCCchhHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHH
Confidence 3444444444567889999999999998642 22221 1112344444 43333333 66778888888877
Q ss_pred CCC
Q 017402 246 SFP 248 (372)
Q Consensus 246 ~~~ 248 (372)
..-
T Consensus 618 ~~~ 620 (1023)
T 4hat_C 618 SEE 620 (1023)
T ss_dssp TTC
T ss_pred HhC
Confidence 643
No 197
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=85.66 E-value=0.12 Score=28.64 Aligned_cols=17 Identities=18% Similarity=0.563 Sum_probs=12.7
Q ss_pred CCCccccCCcccCCCce
Q 017402 6 PDDFKCPISLEIMSDPV 22 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv 22 (372)
.+.|.||+|+..+..|-
T Consensus 3 ~EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSAD 19 (34)
T ss_dssp SEEEECTTTCCEESSHH
T ss_pred CcccCCcHHHHHcCCHH
Confidence 34588999988887763
No 198
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=85.30 E-value=35 Score=35.04 Aligned_cols=206 Identities=9% Similarity=0.030 Sum_probs=121.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCC-ChhHHHHHHHHHhcCCC--Ccc----ccccc
Q 017402 98 SKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSD-GFTLQEKALSLLLNLSL--DDD----NKVGL 170 (372)
Q Consensus 98 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~-~~~~~~~a~~~L~~l~~--~~~----~~~~i 170 (372)
+++++++.|.+|-..|..+-. ++ +++.....+|..... +..++.-|+.+|.+... .++ .+.
T Consensus 17 ~p~sd~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~-- 84 (980)
T 3ibv_A 17 DPSVGPIIKQQATDFIGSLRS-SS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQ-- 84 (980)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHH--
T ss_pred CCCCCHHHHHHHHHHHHHHHc-Ch---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH--
Confidence 455578889999988888765 33 256677777863222 68899999998876432 122 222
Q ss_pred cccCChHHHHHHHhc-----CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 171 VAEGAVSRVVAALRF-----GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 171 ~~~g~i~~lv~~L~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
+.=..++.++.. +..-++...+.++..+....-.. .-.+.++.|+.++..++........+++|..++
T Consensus 85 ---~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~ 157 (980)
T 3ibv_A 85 ---MIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIG 157 (980)
T ss_dssp ---HHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhH
Confidence 222334444442 35668888888888887654211 224788999998876433134455566666332
Q ss_pred ----CCC--c-----h-----hHHHHhcC---chHHHHHHHhh----h----HHHHHHHHHHHhCCHhHHHHHHhccchH
Q 017402 246 ----SFP--E-----N-----RKRVVSCG---AVPILMRLADA----G----LERAVEVLSILVKCKEGREEMMRVSGCV 298 (372)
Q Consensus 246 ----~~~--~-----~-----~~~i~~~g---~v~~L~~ll~~----~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i 298 (372)
... . . +..+.+.. +++..+.+|.. . ...++.++......- .-..+.+ ...+
T Consensus 158 EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~-~~ll 235 (980)
T 3ibv_A 158 DEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVN-EPCM 235 (980)
T ss_dssp HHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHC-HHHH
T ss_pred HHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhc-chHH
Confidence 111 0 1 12222211 13334444422 1 345666666666532 2334444 5677
Q ss_pred HHHHHHHhcCChhHHHhHHHHHHHHhcC
Q 017402 299 GVFVKMLKTGSSRAVQCSLFTLSCLCCC 326 (372)
Q Consensus 299 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 326 (372)
+.+.+++.. +..+..|+.+|..+...
T Consensus 236 ~~l~~~L~~--~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 236 NLLYSFLQI--EELRCAACETMTEIVNK 261 (980)
T ss_dssp HHHHHHTTS--HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCC--hHHHHHHHHHHHHHHHc
Confidence 877777754 78899999999998765
No 199
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=85.19 E-value=2.8 Score=32.88 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=55.2
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcC-CHHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHHH
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCC-SQEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTL 365 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~l 365 (372)
++..|.+-|.+.++.++..|+.+|-.+..+ +.....++.+...+..|+.++.. .++.||+++..++..-
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 566777888888999999999999888776 35667677777788888888875 5789999999988643
No 200
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=84.50 E-value=5.7 Score=33.09 Aligned_cols=141 Identities=12% Similarity=0.061 Sum_probs=87.9
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCC--Ccccccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSL--DDDNKVG 169 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~ 169 (372)
+...|-.+. ..++|.-|+..|..+ ... ...++.+...+.. +.+=.+++.++.++..++. +++
T Consensus 75 la~~L~~~~-~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~-D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 75 LAFLAYQSD-VYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSK-DNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHTCS-SHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGG-CSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHhCc-chHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCC-CCCccHHHHHHHHHHHHHHhcCHH----
Confidence 444454442 457888888877665 211 2234555542332 4556799999999988764 232
Q ss_pred ccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccc-hHHHHHHHhhcCCchHHHHHHHHHHHhhcCCC
Q 017402 170 LVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPY-AINALVSLLQNGKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 170 i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~ 248 (372)
..++.+.....+++..+|..|+..+.--+... . .... .. +++.|-.+..+++. -+++...+.|..++..+
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~--~-~k~d-p~~ll~iL~~L~~D~s~-yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRP--Y-FKEN-PNEAIRRIADLKEDVSE-YVRKSVGNALRDISKKF 209 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST--T-TTTC-HHHHHHHHHTTTTCSCH-HHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc--h-hhcC-HHHHHHHHHHhcCChHH-HHHHHHHHHHHHHhhhC
Confidence 15678889999999999999887775433221 1 1122 23 44444444444444 89999999999999854
Q ss_pred -chhHHHHhc
Q 017402 249 -ENRKRVVSC 257 (372)
Q Consensus 249 -~~~~~i~~~ 257 (372)
+-...+++.
T Consensus 210 Pd~V~~~~~~ 219 (240)
T 3l9t_A 210 PDLVKIELKN 219 (240)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 555555543
No 201
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=83.78 E-value=3.3 Score=31.87 Aligned_cols=70 Identities=10% Similarity=0.130 Sum_probs=57.1
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcC-CHHHHHHHHhcChhHHHHHHhhc------ccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCC-SQEICGDSRKEGVLDICMGLLED------DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~~~~l~~ll~~------~~~~v~~~a~~~L~~l~ 366 (372)
++..|.+-+++.++.++..|+.+|-.+..+ +.....++.+...+..|+.++.. .+..||+++..++..-.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 577788888889999999999999988876 45677788777888889988863 47899999998886543
No 202
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=83.62 E-value=5 Score=30.47 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=55.2
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcC-CHHHHHHHHhc-ChhHHHHHHhhc--------ccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCC-SQEICGDSRKE-GVLDICMGLLED--------DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~-g~~~~l~~ll~~--------~~~~v~~~a~~~L~~l~ 366 (372)
.++.|.+-|...++.++-.|+.+|..||.+ ++..+..+.+. ..|+.+.+.--. ....||..|..++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 567788888888899999999999999965 45777777665 345555544322 13789999999999988
Q ss_pred cCCC
Q 017402 367 GNPS 370 (372)
Q Consensus 367 ~~~~ 370 (372)
+...
T Consensus 130 d~~~ 133 (140)
T 1vdy_A 130 SEEN 133 (140)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 7653
No 203
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=82.78 E-value=3.2 Score=31.63 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=53.7
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHH
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTL 365 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l 365 (372)
++..|.+-|.+.++.++..|+.+|-.+..+. .....++.+...+..|+.++...++.|+++...++...
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 5667777888889999999998888877664 45566666666777778888778899999999998654
No 204
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=82.59 E-value=25 Score=36.39 Aligned_cols=199 Identities=16% Similarity=0.159 Sum_probs=112.4
Q ss_pred CChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccc------cchhhhccccch
Q 017402 145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVE------VNKATIGDYPYA 217 (372)
Q Consensus 145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~------~~~~~i~~~~g~ 217 (372)
.+.+.+..|-..|..+..++ ++...+..+|.+ .+..+|..|+.+|.+..... +.+..|
T Consensus 28 p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i------ 92 (1049)
T 3m1i_C 28 GSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI------ 92 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH------
T ss_pred CChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH------
Confidence 44557777877887664433 344456666644 57889999999999876432 222222
Q ss_pred HHHHHHHhhcCC--------chHHHHHHHHHHHhhcCC--CchhHHHHhcCchHHHHHHHhhh---HHHHHHHHHHHhCC
Q 017402 218 INALVSLLQNGK--------LIREKKEAATALYALTSF--PENRKRVVSCGAVPILMRLADAG---LERAVEVLSILVKC 284 (372)
Q Consensus 218 i~~Lv~ll~~~~--------~~~~~~~a~~aL~~L~~~--~~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~L~~L~~~ 284 (372)
=..|+..+.... ++.++...+.++..++.. ++.-. +.++.|+..+..+ .+.++.+|..|+..
T Consensus 93 r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp-----~ll~~L~~~~~~~~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSSSSVNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 233444443321 125677777777777653 32221 4667777777533 56677777777742
Q ss_pred Hh---------HH-----HHHHhc-cchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhh
Q 017402 285 KE---------GR-----EEMMRV-SGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLE 348 (372)
Q Consensus 285 ~~---------~~-----~~i~~~-~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~ 348 (372)
-. .| ..+..+ ...+..+...+.. .++.++..++.++.+....-+- ..+.+...++.+.+.+.
T Consensus 168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l 245 (1049)
T 3m1i_C 168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFM 245 (1049)
T ss_dssp HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHH
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhC
Confidence 11 11 122221 1233444555543 4567788888888776543221 22444566666663222
Q ss_pred cccHHHHHHHHHHHHHHh
Q 017402 349 DDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 349 ~~~~~v~~~a~~~L~~l~ 366 (372)
.+++++..|..+|..+-
T Consensus 246 -~~~~~~~~a~~~L~~i~ 262 (1049)
T 3m1i_C 246 -TSPDTRAITLKCLTEVS 262 (1049)
T ss_dssp -HSHHHHHHHHHHHHHHH
T ss_pred -CCHhHHHHHHHHHHHHH
Confidence 36778888888776543
No 205
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=82.26 E-value=3.2 Score=32.84 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=56.7
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhc------ccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLED------DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~------~~~~v~~~a~~~L~~l~ 366 (372)
++..|.+-+.+.++.++..|+.+|-.+..+. .....++.+...+..|+.++.. .+.+||+++..++..-.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 5677888888899999999999999988774 4667777777888889998862 46899999999987543
No 206
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=80.27 E-value=0.46 Score=32.94 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=32.1
Q ss_pred CccccCCcccCCCceecC-CchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVILS-SGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~-cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.+.|.-|=.-.+ =.+. ..|.+|..|+...++. ...||.|+.++.
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECC
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCC
Confidence 466777655444 3444 4699999999876654 667999999988
No 207
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=78.94 E-value=1.8 Score=29.34 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=26.5
Q ss_pred CCCCCCccccCCcccCCCcee--cCCchHhhHHHHHHH
Q 017402 3 TQFPDDFKCPISLEIMSDPVI--LSSGHTFDRASIQRW 38 (372)
Q Consensus 3 ~~~~~~~~C~ic~~~~~~Pv~--~~cgh~~c~~ci~~~ 38 (372)
++++.+-.|++|...-.+-.. ..|+..|+..|+.+.
T Consensus 10 e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCccccccccceeccccccccccHhhcccc
Confidence 456778899999866544322 248899999999885
No 208
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=78.75 E-value=16 Score=31.72 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=92.4
Q ss_pred hhHHHHhhcc--CC--ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC-c
Q 017402 90 QTLISVLTSK--SS--PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD-D 164 (372)
Q Consensus 90 ~~li~~L~~~--~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~-~ 164 (372)
.+...+++++ -+ +.+.-..|+..|..++. +-++...|.+.. -..|-.++-.....+.+++.++++|.....+ +
T Consensus 25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-Di~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-DYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-SHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-hHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 4566778776 12 23356788999999997 566777777643 3444444422245677999999999886555 5
Q ss_pred cccccccc--cCChHHHHHHHhc-------CChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcC-CchHHH
Q 017402 165 DNKVGLVA--EGAVSRVVAALRF-------GSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNG-KLIREK 234 (372)
Q Consensus 165 ~~~~~i~~--~g~i~~lv~~L~~-------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~ 234 (372)
.....|.+ ...+..+..-|.. ....+++.-+++|-.|..+. ..+.. .++..|.+++... .+++++
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~---~~F~~--~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS---EDLPI--YSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS---TTC----CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh---Hhhhh--ccHHHHHHHHccCCCCHHHH
Confidence 44443433 4555555544433 23455566778888887664 22222 3567777777654 123888
Q ss_pred HHHHHHHHhhc
Q 017402 235 KEAATALYALT 245 (372)
Q Consensus 235 ~~a~~aL~~L~ 245 (372)
..++..+..+-
T Consensus 178 ~Kvl~li~d~f 188 (315)
T 3qml_C 178 IKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888887665
No 209
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=78.13 E-value=6.7 Score=30.17 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=55.5
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhc------ccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLED------DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~------~~~~v~~~a~~~L~~l~ 366 (372)
++..|.+-+.+.++.++..|+.+|-.+..+. .....++.+...+..|+.++.. .+.+||++...++....
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 5777888888899999999999998887764 4566777777788888888853 57899999999987543
No 210
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=76.62 E-value=8.1 Score=40.12 Aligned_cols=130 Identities=14% Similarity=0.041 Sum_probs=65.5
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC---chHHHHHHHHHHHhh----cCC
Q 017402 175 AVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK---LIREKKEAATALYAL----TSF 247 (372)
Q Consensus 175 ~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~---~~~~~~~a~~aL~~L----~~~ 247 (372)
.+..+.+++.++.....+ |+.+|..+... . .-. ...+..+..++.+.. .+.++..++.+++.| |.+
T Consensus 357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~---~--~Pt-~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~ 429 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAE-ATQIVASTLSN---Q--QAT-RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN 429 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHT---C--CCC-HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHhhcc---C--CCC-HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc
Confidence 566666777665443333 33444322110 1 122 356777777776532 224556566665555 443
Q ss_pred CchhHHHHhcCchHHHHHHHh----hh----HHHHHHHHHHHhCCHhHHHHHHhccchHHHHHHHHhc-------CChhH
Q 017402 248 PENRKRVVSCGAVPILMRLAD----AG----LERAVEVLSILVKCKEGREEMMRVSGCVGVFVKMLKT-------GSSRA 312 (372)
Q Consensus 248 ~~~~~~i~~~g~v~~L~~ll~----~~----~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L~~ll~~-------~~~~~ 312 (372)
...+ ....++.+.+.+. .+ .-.++.+|+|+-. ...++.|..++.. ....+
T Consensus 430 ~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rv 494 (1056)
T 1lsh_A 430 TVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRV 494 (1056)
T ss_dssp CSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHH
T ss_pred CCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccccccchHH
Confidence 3222 1234566666652 22 3347888888876 2344555444421 12344
Q ss_pred HHhHHHHHHHHhcC
Q 017402 313 VQCSLFTLSCLCCC 326 (372)
Q Consensus 313 ~~~a~~~L~~l~~~ 326 (372)
+..|+.+|..++..
T Consensus 495 r~aAi~ALr~~~~~ 508 (1056)
T 1lsh_A 495 QAEAIMALRNIAKR 508 (1056)
T ss_dssp HHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHhhhh
Confidence 55566666665544
No 211
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.90 E-value=9.8 Score=31.51 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=53.9
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~l~ 366 (372)
++..|.+-|.+.++.++..|+.+|-.+..+. .....++.+...++.|..++.. .+..||+++..++....
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 5667778888899999999999988887763 3566666666677777777765 47899999999987543
No 212
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=71.69 E-value=41 Score=34.90 Aligned_cols=128 Identities=11% Similarity=0.059 Sum_probs=82.9
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhc-----CCChhHHHHHHHHHhcCCCCccc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIH-----SDGFTLQEKALSLLLNLSLDDDN 166 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-----~~~~~~~~~a~~~L~~l~~~~~~ 166 (372)
+...+.+. +.+.+.-++++|+|+.. + ..++.|..++... +....++..|+.+|..++.....
T Consensus 445 l~~~~~~~--~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~ 511 (1056)
T 1lsh_A 445 LSQSSDRA--KEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR 511 (1056)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH
T ss_pred HHHHHhcC--ChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH
Confidence 33444443 57778889999999775 2 2467777776421 12345778899999998753211
Q ss_pred cccccccCChHHHHHHHh--cCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 017402 167 KVGLVAEGAVSRVVAALR--FGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYAL 244 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L~--~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L 244 (372)
-+-+.+..+.. ..+.++|..|..+|....-. ...+..+...+..+.+.++.......|.++
T Consensus 512 -------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~----------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sl 574 (1056)
T 1lsh_A 512 -------KVQEIVLPIFLNVAIKSELRIRSCIVFFESKPS----------VALVSMVAVRLRREPNLQVASFVYSQMRSL 574 (1056)
T ss_dssp -------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC----------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC----------HHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 12345777774 36899999888888754211 244566666666654458888888888888
Q ss_pred cCCCc
Q 017402 245 TSFPE 249 (372)
Q Consensus 245 ~~~~~ 249 (372)
+....
T Consensus 575 a~s~~ 579 (1056)
T 1lsh_A 575 SRSSN 579 (1056)
T ss_dssp TTCCS
T ss_pred HhcCC
Confidence 87553
No 213
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=71.39 E-value=1e+02 Score=32.04 Aligned_cols=212 Identities=14% Similarity=0.164 Sum_probs=120.8
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhc-CChHHHHHHHHHHHHhcccc------
Q 017402 133 VSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRF-GSPDCRAIAATIITSLAVVE------ 205 (372)
Q Consensus 133 i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~-~~~~~~~~a~~~L~~ls~~~------ 205 (372)
+..++..+. +++++.+..|-..|..+-.+++. ...+..+|.. .++.+|..|+.+|.+.....
T Consensus 30 Le~lv~~ly--~p~~~~r~qA~~~L~q~q~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 30 LDNVVNCLY--HGEGAQQRMAQEVLTHLKEHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHTTT--CSSHHHHHHHHHHHHTSSCCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHHHcCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 444555555 45677888899999888765544 3333444433 57899999999999876532
Q ss_pred cchhhhccccchHHHHHHHhhcC----CchHHHHHHHHHHHhhcC--CCchhHHHHhcCchHHHHHHHhhh---HHHHHH
Q 017402 206 VNKATIGDYPYAINALVSLLQNG----KLIREKKEAATALYALTS--FPENRKRVVSCGAVPILMRLADAG---LERAVE 276 (372)
Q Consensus 206 ~~~~~i~~~~g~i~~Lv~ll~~~----~~~~~~~~a~~aL~~L~~--~~~~~~~i~~~g~v~~L~~ll~~~---~e~a~~ 276 (372)
+.+..+.. ..+..+.....++ .++.++...+.++..++. .++.-. +.++.++.++.++ .+..+.
T Consensus 99 e~~~~LR~--~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp-----~fi~dLv~~~~~~~~~~~~~L~ 171 (1073)
T 3gjx_A 99 NQCEGIKK--YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP-----TFISDIVGASRTSESLCQNNMV 171 (1073)
T ss_dssp HHHHHHHH--HHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc-----HHHHHHHHHhCCCHHHHHHHHH
Confidence 22233322 3444444433221 223556666667776654 233221 3456666666433 556777
Q ss_pred HHHHHhCC----H-----hH-----HHHHHhc-cchHHHHHHHHhc-CChhHHHhHHHHHHHHhcCCHHHHHHHHhcChh
Q 017402 277 VLSILVKC----K-----EG-----REEMMRV-SGCVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVL 340 (372)
Q Consensus 277 ~L~~L~~~----~-----~~-----~~~i~~~-~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~ 340 (372)
+|..|+.. . .. ++.+... ...+..+..++.. .++.+...++.+|......-+ -..+.+.+.+
T Consensus 172 IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll 249 (1073)
T 3gjx_A 172 ILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLI 249 (1073)
T ss_dssp HHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHH
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHH
Confidence 77777652 0 01 1123321 1233444444433 456666778888888766522 2356677888
Q ss_pred HHHH-HHhhcccHHHHHHHHHHHHHHh
Q 017402 341 DICM-GLLEDDNEKVRRNANNLIQTLS 366 (372)
Q Consensus 341 ~~l~-~ll~~~~~~v~~~a~~~L~~l~ 366 (372)
+.++ .++ ++++.|..|..+|..+-
T Consensus 250 ~~L~~~~L--~~~~~r~aA~dcL~eIv 274 (1073)
T 3gjx_A 250 STLIYKFL--NVPMFRNVSLKCLTEIA 274 (1073)
T ss_dssp HHHHHHTS--SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHHH
Confidence 8774 555 46789999999987543
No 214
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=71.13 E-value=1.2 Score=23.44 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=12.4
Q ss_pred CCccccCCcccCCCcee
Q 017402 7 DDFKCPISLEIMSDPVI 23 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~ 23 (372)
..+.||+|+..+-|+-+
T Consensus 2 ~k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CCEECTTSSCEESSHHH
T ss_pred CcccCccccccCcChHH
Confidence 45788888888777644
No 215
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=71.02 E-value=99 Score=31.84 Aligned_cols=180 Identities=12% Similarity=0.106 Sum_probs=107.0
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhc-----ChHHHHHHhhcCCHHHHHHHHhhcC--C-----ChhHHHHHHHHHhc
Q 017402 92 LISVLTSKSSPLESKLESLTQLTKLSKR-----DSASRRKLTESGAVSAVLNCLKIHS--D-----GFTLQEKALSLLLN 159 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~--~-----~~~~~~~a~~~L~~ 159 (372)
+..+|.++ .++.+|.-|+..|++.... +++.+..+.+ .++..+.+.. . +..++...+.++..
T Consensus 53 l~~iL~~s-~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~-----~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~ 126 (1049)
T 3m1i_C 53 ADQILQFS-TNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN-----FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQ 126 (1049)
T ss_dssp HHHHHHHC-SCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH-----HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHhhC-CCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH-----HHHHHHHhhCCccccchhhHHHHHHHHHHHHH
Confidence 55666553 5889999999999987753 2333333322 3444444211 1 35678888888888
Q ss_pred CCCC--ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccc-cc-h------------hhhcc-ccchHHHHH
Q 017402 160 LSLD--DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVE-VN-K------------ATIGD-YPYAINALV 222 (372)
Q Consensus 160 l~~~--~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~-~~-~------------~~i~~-~~g~i~~Lv 222 (372)
++.. ++.. .+.++.|+..++ .+...+..+..+|..++..- +. . ..+.. ...++..+.
T Consensus 127 Ia~~~~p~~W-----p~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~ 200 (1049)
T 3m1i_C 127 ILKQEWPQNW-----PEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCF 200 (1049)
T ss_dssp HHHHHTTTTC-----TTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccc-----hHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655 2111 467888999986 56666777778887776321 10 0 11211 113445555
Q ss_pred HHhhcCCchHHHHHHHHHHHhhcCCCchhHHHHhcCchHHHHH-HHhhh--HHHHHHHHHHHhCC
Q 017402 223 SLLQNGKLIREKKEAATALYALTSFPENRKRVVSCGAVPILMR-LADAG--LERAVEVLSILVKC 284 (372)
Q Consensus 223 ~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~-ll~~~--~e~a~~~L~~L~~~ 284 (372)
..+....+..++..++.++.+...+-+. ..+.+...++.+.. ++... .+.++..|..+...
T Consensus 201 ~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 201 QVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMTSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCCCHhHHHHHHHHHHHHHhC
Confidence 6665544447889999999886654432 23455666776663 33333 66777777777653
No 216
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.72 E-value=11 Score=31.07 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=54.5
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCH-HHHHHHHhcChhHHHHHHhhc-ccHHHHHHHHHHHHHHh
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQ-EICGDSRKEGVLDICMGLLED-DNEKVRRNANNLIQTLS 366 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~~~~l~~ll~~-~~~~v~~~a~~~L~~l~ 366 (372)
++..|.+-|.+.++.++..|+.+|-.+..+.. ....++.+...+..|+.++.+ .+.+||+++..+++.-.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 56677777888999999999999999887754 566677666678888888765 46899999998886543
No 217
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=70.20 E-value=0.062 Score=37.44 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=25.8
Q ss_pred ccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..||.|...|.. .-++.+|..|-..+.. ...||.|++++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhhc--cccCcchhhHHH
Confidence 689999987652 1233346666543221 347999998876
No 218
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=70.01 E-value=71 Score=33.63 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=71.5
Q ss_pred CChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHh--cCChHHHHHHHHHHHHhcccc------cchhhhccccc
Q 017402 145 DGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALR--FGSPDCRAIAATIITSLAVVE------VNKATIGDYPY 216 (372)
Q Consensus 145 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~--~~~~~~~~~a~~~L~~ls~~~------~~~~~i~~~~g 216 (372)
.+.+.+..|-..|..+..++ .+...+...|. +.+..+|..|+.+|.+..... +.+..|
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I----- 90 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL----- 90 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-----
T ss_pred CChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-----
Confidence 35667888888887764332 23344444443 457889999999999875331 222223
Q ss_pred hHHHHHHHhhcC------CchHHHHHHHHHHHhhcCC--CchhHHHHhcCchHHHHHHHhhh---HHHHHHHHHHHhC
Q 017402 217 AINALVSLLQNG------KLIREKKEAATALYALTSF--PENRKRVVSCGAVPILMRLADAG---LERAVEVLSILVK 283 (372)
Q Consensus 217 ~i~~Lv~ll~~~------~~~~~~~~a~~aL~~L~~~--~~~~~~i~~~g~v~~L~~ll~~~---~e~a~~~L~~L~~ 283 (372)
=..|++.+... .++.++...+.++..++.. ++.-. +.++.|+.++.++ .+.++.+|..|+.
T Consensus 91 -r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp-----~ll~~L~~~~~~~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 91 -KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP-----DMLIELDTLSKQGETQTELVMFILLRLAE 162 (1204)
T ss_dssp -HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT-----THHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 23344444322 2346777778888877753 32221 4667777777544 5667888888765
No 219
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=68.02 E-value=54 Score=27.61 Aligned_cols=143 Identities=10% Similarity=0.061 Sum_probs=86.1
Q ss_pred hhHHHHhhccCC-ChHHHHHHHHHHHHHhhcC-hHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402 90 QTLISVLTSKSS-PLESKLESLTQLTKLSKRD-SASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK 167 (372)
Q Consensus 90 ~~li~~L~~~~~-~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~ 167 (372)
+..+++|+.... ..+.+...++..+.+...+ +..-. .+++.++.+-. +.+.+++.-.+.+|...+..+
T Consensus 15 ~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~--~~~~~vrk~~~~Fi~e~~~~k--- 84 (257)
T 3gs3_A 15 AKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAE-----EFLESVLSLAH--DSNMEVRKQVVAFVEQVCKVK--- 84 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGG--CSCHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhcc--CChHHHHHHHHHHHHHHHHHH---
Confidence 346667765422 3478999999999987653 32222 35666777654 578889999999997765221
Q ss_pred ccccccCChHHHHHHHhcCChHHHHHHHHHHHH--------hcccccc----hhhhccccchHHHHHHHhhcCCchHHHH
Q 017402 168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITS--------LAVVEVN----KATIGDYPYAINALVSLLQNGKLIREKK 235 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~--------ls~~~~~----~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 235 (372)
.-.-...++.|..+|+++++.+.+.+..+..+ ++.++.. ...-......-..++.++.+.+. .++.
T Consensus 85 -~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~-gvkl 162 (257)
T 3gs3_A 85 -VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNEND-GIRT 162 (257)
T ss_dssp -GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCH-HHHH
T ss_pred -HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCc-chHH
Confidence 11234567788888888888887766654433 3322211 00001111344455666666666 7777
Q ss_pred HHHHHHHhh
Q 017402 236 EAATALYAL 244 (372)
Q Consensus 236 ~a~~aL~~L 244 (372)
.+++.+-.+
T Consensus 163 ~~iKF~e~v 171 (257)
T 3gs3_A 163 NAIKFLEGV 171 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766653
No 220
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=67.83 E-value=60 Score=28.09 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=73.0
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhhcChHHHHHHhhc--CCHHHHHHHHhhc-----CCChhHHHHHHHHHhcCCCCccc
Q 017402 94 SVLTSKSSPLESKLESLTQLTKLSKRDSASRRKLTES--GAVSAVLNCLKIH-----SDGFTLQEKALSLLLNLSLDDDN 166 (372)
Q Consensus 94 ~~L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~~-----~~~~~~~~~a~~~L~~l~~~~~~ 166 (372)
+++...+.++..+..|+++|..-...+|.....+.+. ..+..++.-|... .....++..-+.+|..|..++
T Consensus 75 nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-- 152 (315)
T 3qml_C 75 NLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS-- 152 (315)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--
T ss_pred HHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--
Confidence 3443344566789999999999999899887777664 5566665555420 123456778888888888775
Q ss_pred cccccccCChHHHHHHHhcC--ChHHHHHHHHHHHHhc
Q 017402 167 KVGLVAEGAVSRVVAALRFG--SPDCRAIAATIITSLA 202 (372)
Q Consensus 167 ~~~i~~~g~i~~lv~~L~~~--~~~~~~~a~~~L~~ls 202 (372)
..+ ...++..|.+++..+ +..++..++..+..+=
T Consensus 153 -~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 153 -EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp -TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred -Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 223 355778888888877 8999988887777654
No 221
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=67.80 E-value=52 Score=27.33 Aligned_cols=139 Identities=13% Similarity=0.022 Sum_probs=83.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhcC--CCchhHHH
Q 017402 177 SRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALTS--FPENRKRV 254 (372)
Q Consensus 177 ~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~~i 254 (372)
+..-.+..++..++|..|+.+|..+ . .. ...++.+...+.....=.+++.++.++..++. .++.
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---- 139 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---- 139 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----
Confidence 4444455667789999999988877 2 11 35677777644433333788888899988774 3331
Q ss_pred HhcCchHHHHHHHhhh----HHHHHHHHHHHhCCHhHHHHHHhc-cchHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHH
Q 017402 255 VSCGAVPILMRLADAG----LERAVEVLSILVKCKEGREEMMRV-SGCVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQE 329 (372)
Q Consensus 255 ~~~g~v~~L~~ll~~~----~e~a~~~L~~L~~~~~~~~~i~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 329 (372)
.++.+.....++ +..|...+.--+..+ .+... +-.++.|..+..+.+..++......|..+++.+|+
T Consensus 140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~----~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRP----YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGST----TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccc----hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 455666666444 233332222111111 11111 12344554555567888999999999999999998
Q ss_pred HHHHHHhc
Q 017402 330 ICGDSRKE 337 (372)
Q Consensus 330 ~~~~~~~~ 337 (372)
-...+++.
T Consensus 212 ~V~~~~~~ 219 (240)
T 3l9t_A 212 LVKIELKN 219 (240)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 77666553
No 222
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.85 E-value=17 Score=28.31 Aligned_cols=70 Identities=6% Similarity=0.067 Sum_probs=52.6
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccc--cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 175 AVSRVVAALRFGSPDCRAIAATIITSLAVVE--VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 175 ~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
++..|.+-|.+.++.++..|+.+|-.+..+- .....|.. ...+..|+.++....++.++..++..|..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas-~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCS-RDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTS-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhh-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4556777788889999999888888887663 34556666 6899999999986444588888888776544
No 223
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=66.82 E-value=2.1 Score=36.10 Aligned_cols=85 Identities=13% Similarity=0.174 Sum_probs=47.3
Q ss_pred HHHHhhccCCChHHHHHHHHHH-----HHHhh-cChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcc
Q 017402 92 LISVLTSKSSPLESKLESLTQL-----TKLSK-RDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDD 165 (372)
Q Consensus 92 li~~L~~~~~~~~~~~~a~~~L-----~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 165 (372)
+..++.+. +..+|..++..+ ..+.. .+...|......-..+.+..+++ +.+..++..++..+.
T Consensus 103 L~~ll~D~--d~~VR~~aA~~l~~~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~--D~d~~VR~~aa~~l~------- 171 (244)
T 1lrv_A 103 LSALMFDE--DREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMR--DEDRQVRKLVAKRLP------- 171 (244)
T ss_dssp GGGTTTCS--CHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTT--CSCHHHHHHHHHHSC-------
T ss_pred HHHHHcCC--CHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHc--CCCHHHHHHHHHcCC-------
Confidence 44445443 677787776543 33332 23445555555434444555666 788889988888521
Q ss_pred ccccccccCChHHHHHHHhcCChHHHHHHHHH
Q 017402 166 NKVGLVAEGAVSRVVAALRFGSPDCRAIAATI 197 (372)
Q Consensus 166 ~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~ 197 (372)
-+.+..++++.+..++..++..
T Consensus 172 ----------~~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 172 ----------EESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp ----------GGGGGGSTTCSSHHHHHHHHHH
T ss_pred ----------HHHHHHHHcCCCHHHHHHHHHh
Confidence 1223345555666666666543
No 224
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=65.52 E-value=19 Score=27.81 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=52.5
Q ss_pred hHHHHHHHHh-cCChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhHH-HHHHhhc---ccHHHHHHHHHHHHHH
Q 017402 297 CVGVFVKMLK-TGSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLDI-CMGLLED---DNEKVRRNANNLIQTL 365 (372)
Q Consensus 297 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~~-l~~ll~~---~~~~v~~~a~~~L~~l 365 (372)
++..|.+-|+ +.++.++..|+.+|-.+..+. +....++.+...+.. |+.++.. .+..||+++..++..-
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 5667777786 478888999999998888764 577777777778887 7787742 3568999999888643
No 225
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=65.40 E-value=2.9 Score=30.87 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=34.1
Q ss_pred ccccCCcccCCC---ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSD---PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~---Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
|.|..|...+.+ .....=|..||..|..+.+.. ...|..|+.++.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~ 80 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGS 80 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcC
Confidence 789999998863 344556788999999886642 237999998887
No 226
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=63.05 E-value=2.7 Score=29.34 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=10.9
Q ss_pred hhHHHHHHHHhc
Q 017402 30 FDRASIQRWLDS 41 (372)
Q Consensus 30 ~c~~ci~~~~~~ 41 (372)
|||.|+.+|...
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999964
No 227
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.92 E-value=16 Score=30.16 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=55.6
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhccccc--chhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVEV--NKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
.++..|.+-|.+.++.++..|+.+|-.+..+-. ....|.. ...+..|++++....+..++..++..|...+
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVAN-KQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 356778888888999999999999888876643 3555666 6888999999877655588998888887665
No 228
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=62.66 E-value=2.8 Score=29.22 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=10.9
Q ss_pred hhHHHHHHHHhc
Q 017402 30 FDRASIQRWLDS 41 (372)
Q Consensus 30 ~c~~ci~~~~~~ 41 (372)
|||.|+.+|...
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 229
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=62.62 E-value=7 Score=29.67 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=59.2
Q ss_pred CHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC--ccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchh
Q 017402 132 AVSAVLNCLKIHSDGFTLQEKALSLLLNLSLD--DDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKA 209 (372)
Q Consensus 132 ~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~ 209 (372)
++..|.+-|. +.++.++..|+..|-.+..+ +.....|.+...+..++++++..++.++......+..-+..-.+..
T Consensus 43 a~rai~Krl~--~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 43 CLRSIMRRVN--HKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHc--CCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 3555666666 67777888888777776655 3334556667788888888877889999999988887764332222
Q ss_pred hhccccchHHHHHHHhhc
Q 017402 210 TIGDYPYAINALVSLLQN 227 (372)
Q Consensus 210 ~i~~~~g~i~~Lv~ll~~ 227 (372)
. -+.|..+.+.|+.
T Consensus 121 ~----l~~i~~~Y~~Lk~ 134 (140)
T 3ldz_A 121 Q----LSLISAMIKNLKE 134 (140)
T ss_dssp G----GTHHHHHHHHHHH
T ss_pred C----chHHHHHHHHHHH
Confidence 1 1345555555543
No 230
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=60.51 E-value=16 Score=27.87 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=53.6
Q ss_pred hHHHHhhccCCChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhc----CCChhHHHHHHHHHhcCC
Q 017402 91 TLISVLTSKSSPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIH----SDGFTLQEKALSLLLNLS 161 (372)
Q Consensus 91 ~li~~L~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~----~~~~~~~~~a~~~L~~l~ 161 (372)
.+...|.+. ++.++..|+..|-.+... ...+...+....++..|++++... ..+..++..++..|..-+
T Consensus 42 ai~krl~~~--n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 42 LLAHKIQSP--QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 355667654 899999999999988876 466888888889999999988621 136789999988887643
No 231
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=60.50 E-value=0.23 Score=33.66 Aligned_cols=40 Identities=15% Similarity=0.399 Sum_probs=23.1
Q ss_pred ccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..||.|...+.. .-++.+|..|-..+-. ...||.|++++.
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~~--~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDFSL--QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEEEE--EEECSSSCSCCC
T ss_pred CCCCCCCCcccc----CCCceECccccccCCC--cccCcchhhHHH
Confidence 679999987642 1223335545433222 226999988776
No 232
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=59.22 E-value=3.6 Score=30.43 Aligned_cols=44 Identities=9% Similarity=0.110 Sum_probs=33.8
Q ss_pred CccccCCcccCCC-ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSD-PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~-Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
=|.|..|...+.. +....-|..||..|..+.+ ...|+.|++++.
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 74 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAID 74 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCC
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCC
Confidence 4889999988765 4455678889999987643 457999998887
No 233
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=58.01 E-value=25 Score=28.84 Aligned_cols=71 Identities=7% Similarity=0.052 Sum_probs=54.4
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhcccc--cchhhhccccchHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 017402 174 GAVSRVVAALRFGSPDCRAIAATIITSLAVVE--VNKATIGDYPYAINALVSLLQNGKLIREKKEAATALYALT 245 (372)
Q Consensus 174 g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~a~~aL~~L~ 245 (372)
.++..|.+-|.+.++.++..|+.+|-.+..+- .....|.. ...+..|+.++.+..+..+++.++..+..-+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFT-KENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSS-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHh-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 35667788888899999999999999887764 34556776 5799999999887655578888887776544
No 234
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=56.21 E-value=31 Score=27.07 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=53.9
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccc--cchhhhccccchHHHHHHHhhcC-----CchHHHHHHHHHHHhhc
Q 017402 175 AVSRVVAALRFGSPDCRAIAATIITSLAVVE--VNKATIGDYPYAINALVSLLQNG-----KLIREKKEAATALYALT 245 (372)
Q Consensus 175 ~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~-----~~~~~~~~a~~aL~~L~ 245 (372)
++..|.+.|.++++.++..|+.+|-.+..+- .....|.. ...+..|++++... .+..++..++..|..-+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGK-FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4567888888899999999999999888763 45556777 68999999999632 23488888888887654
No 235
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=56.02 E-value=8.7 Score=32.46 Aligned_cols=102 Identities=10% Similarity=0.093 Sum_probs=66.6
Q ss_pred CCChhHHHHHHHHHhcCCCCcc-ccccccccCChHHHHHHHhc--------CChHHHHHHHHHHHHhcccccc-hhhhcc
Q 017402 144 SDGFTLQEKALSLLLNLSLDDD-NKVGLVAEGAVSRVVAALRF--------GSPDCRAIAATIITSLAVVEVN-KATIGD 213 (372)
Q Consensus 144 ~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~lv~~L~~--------~~~~~~~~a~~~L~~ls~~~~~-~~~i~~ 213 (372)
+..+..+-.+++++.|+..++. .+..+.+......++..+.. .+..++..++.++.|+|..... +..
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~--- 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD--- 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC---
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch---
Confidence 3467789999999999988887 56666554344555554421 2567888999999999875422 221
Q ss_pred ccchHHHHHHHhhc--------CCchHHHHHHHHHHHhhcCCCc
Q 017402 214 YPYAINALVSLLQN--------GKLIREKKEAATALYALTSFPE 249 (372)
Q Consensus 214 ~~g~i~~Lv~ll~~--------~~~~~~~~~a~~aL~~L~~~~~ 249 (372)
......+++.+.. ..+.+..-.++-+|.+|...+.
T Consensus 178 -~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 178 -LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp -TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred -HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 2344555555552 1233777888888888876443
No 236
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=55.56 E-value=36 Score=25.99 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=53.5
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhccccc--chhhhccccchHHHHHHHhhcC-----CchHHHHHHHHHHHhhc
Q 017402 175 AVSRVVAALRFGSPDCRAIAATIITSLAVVEV--NKATIGDYPYAINALVSLLQNG-----KLIREKKEAATALYALT 245 (372)
Q Consensus 175 ~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~-----~~~~~~~~a~~aL~~L~ 245 (372)
++..|.+-|.+.++.++..|+.+|-.+..+-. ....|.. ...+..|++++... .+..++...+..|..-+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK-FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS-HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 56678888888899999999998888876543 3455666 68999999999742 23488888888887654
No 237
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=54.80 E-value=27 Score=31.84 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=65.6
Q ss_pred CChhHHHHHHHHHhcCCCCccc-cccccccCChHHHHHHHhc--------CChHHHHHHHHHHHHhcccccc-hhhhccc
Q 017402 145 DGFTLQEKALSLLLNLSLDDDN-KVGLVAEGAVSRVVAALRF--------GSPDCRAIAATIITSLAVVEVN-KATIGDY 214 (372)
Q Consensus 145 ~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~lv~~L~~--------~~~~~~~~a~~~L~~ls~~~~~-~~~i~~~ 214 (372)
..+..+-.+++++.|+..++.. +..+........+++.+.. .+..++..++.+++|+|..... +..
T Consensus 274 ~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---- 349 (425)
T 3pst_A 274 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---- 349 (425)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----
T ss_pred CChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----
Confidence 4677899999999999888774 4444333345566665521 2567888999999999875421 211
Q ss_pred cchHHHHHHHhhc--------CCchHHHHHHHHHHHhhcCCC
Q 017402 215 PYAINALVSLLQN--------GKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 215 ~g~i~~Lv~ll~~--------~~~~~~~~~a~~aL~~L~~~~ 248 (372)
......+++.+.. ..+.++.-.++-||.+|...+
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 2345566666651 123378888888999988643
No 238
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=52.10 E-value=8.6 Score=24.86 Aligned_cols=46 Identities=11% Similarity=0.035 Sum_probs=31.4
Q ss_pred CCCccccCCcccCCCceec--CCchHhhHHHHHHHHhc---CCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVIL--SSGHTFDRASIQRWLDS---GHRTCPITKLPL 53 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~--~cgh~~c~~ci~~~~~~---~~~~CP~c~~~~ 53 (372)
...-.|.+|.+- .-++. .|...|+..|+...+.. +...||.|....
T Consensus 10 ~~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999863 22333 38888999999766543 456899997543
No 239
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=50.39 E-value=9.1 Score=22.97 Aligned_cols=41 Identities=10% Similarity=0.220 Sum_probs=23.3
Q ss_pred CCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..|.|++|...|.....+.- | +...-......||.|...+.
T Consensus 3 ~~~~C~~C~~~f~~~~~l~~-H------~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLNI-H------LRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp --CBCTTTCCBCSCHHHHHH-H------HHHHHCCCCEECSSSSCEES
T ss_pred CCccCCCCcchhCChHHHHH-H------HHHcCCCCCcCCCCCcchhC
Confidence 35789999998887522110 0 11111223568999987766
No 240
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=50.22 E-value=26 Score=31.28 Aligned_cols=101 Identities=10% Similarity=0.068 Sum_probs=64.6
Q ss_pred CCChhHHHHHHHHHhcCCCCccc-cccccccCChHHHHHHHh--------cCChHHHHHHHHHHHHhcccccc-hhhhcc
Q 017402 144 SDGFTLQEKALSLLLNLSLDDDN-KVGLVAEGAVSRVVAALR--------FGSPDCRAIAATIITSLAVVEVN-KATIGD 213 (372)
Q Consensus 144 ~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~lv~~L~--------~~~~~~~~~a~~~L~~ls~~~~~-~~~i~~ 213 (372)
...+..+-.+++++.|+..++.. +..+........+++.+. ..+..++..++.++.|+|..... +..
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~--- 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD--- 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---
Confidence 34677899999999999888774 443333222334444441 12567888999999999875421 111
Q ss_pred ccchHHHHHHHhh-----c---CCchHHHHHHHHHHHhhcCCC
Q 017402 214 YPYAINALVSLLQ-----N---GKLIREKKEAATALYALTSFP 248 (372)
Q Consensus 214 ~~g~i~~Lv~ll~-----~---~~~~~~~~~a~~aL~~L~~~~ 248 (372)
......+++.+. . ..+.++.-.++-||.+|...+
T Consensus 287 -~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 287 -LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp -TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 234556666665 2 123378888889999988533
No 241
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=49.70 E-value=5.2 Score=23.82 Aligned_cols=13 Identities=46% Similarity=0.986 Sum_probs=9.9
Q ss_pred CCCCCccccCCcc
Q 017402 4 QFPDDFKCPISLE 16 (372)
Q Consensus 4 ~~~~~~~C~ic~~ 16 (372)
.+++++.||+|..
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 4677888888874
No 242
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=47.27 E-value=87 Score=28.15 Aligned_cols=140 Identities=13% Similarity=0.141 Sum_probs=86.8
Q ss_pred hhHHHHhhccC-CChHHHHHHHHHHHHHhhc-ChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCcccc
Q 017402 90 QTLISVLTSKS-SPLESKLESLTQLTKLSKR-DSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNK 167 (372)
Q Consensus 90 ~~li~~L~~~~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~ 167 (372)
+.++++|+... ...+.+...++.++.+... ++. .+ ..+++.++.+-. +.+.+++.-.+.+|...+.. +
T Consensus 25 ~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps---Ll--~~fl~~il~f~~--d~~~~vRk~~a~FieEa~~~---~ 94 (386)
T 3o2t_A 25 ERVVDLLNQAALITNDSKITVLKQVQELIINKDPT---LL--DNFLDEIIAFQA--DKSIEVRKFVIGFIEEACKR---D 94 (386)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG---GG--GGGHHHHHGGGG--CSCHHHHHHHHHHHHHHHHH---C
T ss_pred HHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH---HH--HHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHH---H
Confidence 45666666431 1235799999999998763 342 11 357888888877 67889999999998775532 1
Q ss_pred ccccccCChHHHHHHHhcCChHHHHHHHHHHHHh--------ccccc------chhhhccccchHHHHHHHhhcCCchHH
Q 017402 168 VGLVAEGAVSRVVAALRFGSPDCRAIAATIITSL--------AVVEV------NKATIGDYPYAINALVSLLQNGKLIRE 233 (372)
Q Consensus 168 ~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~l--------s~~~~------~~~~i~~~~g~i~~Lv~ll~~~~~~~~ 233 (372)
..+ -...++.|..+|++.++.+.+.++.+..++ +.+.. ..+... ...-..++.++.+.+. .+
T Consensus 95 ~el-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m--~~lK~~Il~~~ds~n~-GV 170 (386)
T 3o2t_A 95 IEL-LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMV--SAMAGDIILLLDSDND-GI 170 (386)
T ss_dssp GGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHH--HHHHHHHHHGGGCSSH-HH
T ss_pred HHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH--HHHHHHHHHHhccCCc-ch
Confidence 111 145677788888878888877655544333 22221 111111 2345566677766666 88
Q ss_pred HHHHHHHHHh
Q 017402 234 KKEAATALYA 243 (372)
Q Consensus 234 ~~~a~~aL~~ 243 (372)
+..+++.+-.
T Consensus 171 rl~aiKFle~ 180 (386)
T 3o2t_A 171 RTHAIKFVEG 180 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888886665
No 243
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=47.17 E-value=8.2 Score=23.63 Aligned_cols=13 Identities=38% Similarity=1.050 Sum_probs=9.9
Q ss_pred CCCCCccccCCcc
Q 017402 4 QFPDDFKCPISLE 16 (372)
Q Consensus 4 ~~~~~~~C~ic~~ 16 (372)
.+++++.||+|..
T Consensus 32 ~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 32 DLPDDWACPVCGA 44 (52)
T ss_dssp SSCTTCCCSSSCC
T ss_pred HCCCCCcCCCCCC
Confidence 3677888888875
No 244
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=47.14 E-value=11 Score=23.72 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=24.8
Q ss_pred CCccccCCcccCCCceecCCchHhhHHHHHHHH----hcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWL----DSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~----~~~~~~CP~c~~~~~ 54 (372)
..|.|++|...|..+. -+.... ....+.|+.|+..|.
T Consensus 3 Kpy~C~~C~k~F~~~~-----------~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDAS-----------GLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp CCEECTTTCCEESSHH-----------HHHHHHHHHHTCCCEECTTTCCEES
T ss_pred CCccCCCCCCEeCCHH-----------HHHHHHHHhCCCcCeECCCCCCCcC
Confidence 4588999998887752 222222 233568999988776
No 245
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=46.72 E-value=12 Score=25.44 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=24.8
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHh----cCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD----SGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~----~~~~~CP~c~~~~~ 54 (372)
.+.+.|++|...|... .-+.+... ...+.|+.|...|.
T Consensus 26 ~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 26 AECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp CTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred CCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeC
Confidence 3457788888887764 23444443 13468999988776
No 246
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=46.13 E-value=28 Score=20.60 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=24.9
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHh-----cCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD-----SGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~-----~~~~~CP~c~~~~~ 54 (372)
+..|.|++|...|..+ .-+.+... ...+.|+.|...|.
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 4568899998877764 23333332 23468999998776
No 247
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=46.05 E-value=8.2 Score=28.62 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCccccCCcccCC---CceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMS---DPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~---~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+=|.|..|...+. .+....=|..||..|..+.+.. ...|+.|++++.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccC
Confidence 4588999999885 3556667888999999876532 227999988776
No 248
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=46.01 E-value=1.3e+02 Score=25.10 Aligned_cols=99 Identities=8% Similarity=-0.050 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHhhcCCCc-hhHHHHhcCchHHHHHHHhh--------h----HHHHHHHHHHHhCCHhHHHHHHhccc
Q 017402 230 LIREKKEAATALYALTSFPE-NRKRVVSCGAVPILMRLADA--------G----LERAVEVLSILVKCKEGREEMMRVSG 296 (372)
Q Consensus 230 ~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~L~~ll~~--------~----~e~a~~~L~~L~~~~~~~~~i~~~~g 296 (372)
++..+.-++++++|+..++. ++..+........++..+.+ . +-.+..++.|++..-..... . ..
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--~-~e 179 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--D-LE 179 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--C-TT
T ss_pred chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--h-HH
Confidence 34788999999999999998 77777654334445554411 1 22345666777763211000 1 22
Q ss_pred hHHHHHHHHhc---------CChhHHHhHHHHHHHHhcCCHHHH
Q 017402 297 CVGVFVKMLKT---------GSSRAVQCSLFTLSCLCCCSQEIC 331 (372)
Q Consensus 297 ~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~~~~~~ 331 (372)
....+++.+.. .+++..-.++.+|.++...++..+
T Consensus 180 ~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~ 223 (253)
T 3gae_A 180 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 223 (253)
T ss_dssp HHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGG
T ss_pred HHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHH
Confidence 44556666642 255666777788888886555443
No 249
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=45.84 E-value=5.9 Score=26.19 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=22.0
Q ss_pred CCCCCccccCCcccCCCc---ee-cCCchHhhHHHHH
Q 017402 4 QFPDDFKCPISLEIMSDP---VI-LSSGHTFDRASIQ 36 (372)
Q Consensus 4 ~~~~~~~C~ic~~~~~~P---v~-~~cgh~~c~~ci~ 36 (372)
.|.++-.|.+|...|.-- -- ..||..||..|-.
T Consensus 7 ~W~~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 7 DWIDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CCCCCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred cCccCCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 344556899999876522 11 3688889888753
No 250
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=45.44 E-value=13 Score=29.11 Aligned_cols=45 Identities=11% Similarity=0.292 Sum_probs=32.8
Q ss_pred CCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+=|.|..|...+.+.....=|..||..|..+.+. ..|..|+..+.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccC
Confidence 4488999988776543445677899999877653 46888887766
No 251
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=45.43 E-value=3.6 Score=33.04 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=34.2
Q ss_pred CCccccCCcccCCC---ceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSD---PVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~---Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+=|.|..|...+.+ +....=|..||..|..+.+.. ...|+.|++.+.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCccc
Confidence 34789999888764 555667888999998876531 126999988776
No 252
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.98 E-value=18 Score=23.36 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=15.7
Q ss_pred ccccCCcccCCCc-eecCCchHhhHHHHHHHHh
Q 017402 9 FKCPISLEIMSDP-VILSSGHTFDRASIQRWLD 40 (372)
Q Consensus 9 ~~C~ic~~~~~~P-v~~~cgh~~c~~ci~~~~~ 40 (372)
|.|..|...+... ....=|..||+.|..+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 5555555554322 2333445556666555443
No 253
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=44.74 E-value=4.7 Score=20.25 Aligned_cols=12 Identities=25% Similarity=0.891 Sum_probs=7.5
Q ss_pred CccccCCcccCC
Q 017402 8 DFKCPISLEIMS 19 (372)
Q Consensus 8 ~~~C~ic~~~~~ 19 (372)
...||+|.+.|.
T Consensus 6 ~vqcpvcqq~mp 17 (29)
T 3vhs_A 6 QVQCPVCQQMMP 17 (29)
T ss_dssp EEECTTTCCEEE
T ss_pred eeeChHHHHhCc
Confidence 345777777654
No 254
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=43.35 E-value=7.3 Score=24.06 Aligned_cols=13 Identities=38% Similarity=0.935 Sum_probs=10.2
Q ss_pred CCCCCccccCCcc
Q 017402 4 QFPDDFKCPISLE 16 (372)
Q Consensus 4 ~~~~~~~C~ic~~ 16 (372)
.+++++.||+|..
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 4778888888875
No 255
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=43.00 E-value=9.6 Score=30.26 Aligned_cols=45 Identities=11% Similarity=0.281 Sum_probs=30.4
Q ss_pred CCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+=|.|..|...+.......=|..||..|..+.+ ...|..|+..+.
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccC
Confidence 347788887776644333456778888876533 457999988776
No 256
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=42.56 E-value=33 Score=19.05 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=11.2
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 9 k~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 9 KPYSCPVCGLRFKRK 23 (45)
T ss_dssp CSSEETTTTEECSCH
T ss_pred CCCcCCCCCcccCCH
Confidence 457888888877664
No 257
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=40.64 E-value=14 Score=22.10 Aligned_cols=35 Identities=9% Similarity=0.266 Sum_probs=22.6
Q ss_pred ccccCCcccCCCceecCCchHhhHHHHHHHHh----cCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPVILSSGHTFDRASIQRWLD----SGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~----~~~~~CP~c~~~~~ 54 (372)
|.|++|...|..+.. +..... .....|+.|+..+.
T Consensus 2 ~~C~~C~~~f~~~~~-----------l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPSM-----------LKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHHH-----------HHHHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCHHH-----------HHHHHHhcCCCCCccCCCCCchhc
Confidence 679999988877522 222222 22457999987766
No 258
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.52 E-value=46 Score=18.57 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=11.3
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytm_A 11 KPYKCMECGKAFGDN 25 (46)
T ss_dssp CSSSBTTTTBCCSSH
T ss_pred CCcCCCCCCchhCCH
Confidence 457888888887764
No 259
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=39.55 E-value=1.2e+02 Score=25.54 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhc
Q 017402 148 TLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQN 227 (372)
Q Consensus 148 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~ 227 (372)
+.+...+.-...+..+.+.. + =..+++.++.+-.+.+.++|...+..+...+.. +..+. ...++.|..++++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~--l-l~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k~~l~--~~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE--L-AEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV---KVELL--PHVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG--G-HHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---CGGGH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCHh--H-HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHcC
Confidence 44455555555544443211 1 144566666655566788888888888877622 22222 3578888888886
Q ss_pred CCchHHHHHHHHHHHh
Q 017402 228 GKLIREKKEAATALYA 243 (372)
Q Consensus 228 ~~~~~~~~~a~~aL~~ 243 (372)
.+. .+.+.+..+..+
T Consensus 102 ~d~-~V~K~~I~~~~~ 116 (257)
T 3gs3_A 102 NSA-QVIKRVIQACGS 116 (257)
T ss_dssp SCH-HHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHH
Confidence 554 777776664443
No 260
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=39.43 E-value=12 Score=25.33 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=10.3
Q ss_pred CCCCCccccCCccc
Q 017402 4 QFPDDFKCPISLEI 17 (372)
Q Consensus 4 ~~~~~~~C~ic~~~ 17 (372)
.+++++.||+|..-
T Consensus 56 dlPddW~CPvCga~ 69 (81)
T 2kn9_A 56 DIPDDWSCPDCGAA 69 (81)
T ss_dssp TSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 46778888888753
No 261
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=39.37 E-value=38 Score=19.24 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=21.9
Q ss_pred CCCCccccCCcccCCCceecCCchHhhHHHHHHHHh----cCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD----SGHRTCPITKL 51 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~----~~~~~CP~c~~ 51 (372)
-+..|.|++|...|... .-+.+... ...+.|+.|..
T Consensus 9 ~~k~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 9 TRKQVACEICGKIFRDV-----------YHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCCSEEETTTTEEESSH-----------HHHHHHGGGSCSCCCCCSCCCCC
T ss_pred CCcCeeCCCCCcccCCH-----------HHHHHHHHhcCCCCCccCCCCCC
Confidence 34568899888877764 22333332 23468998863
No 262
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=39.37 E-value=16 Score=23.29 Aligned_cols=38 Identities=8% Similarity=0.085 Sum_probs=24.1
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHh----cCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD----SGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~----~~~~~CP~c~~~~~ 54 (372)
+..|.|++|...|.... -+.+... ...+.|+.|...+.
T Consensus 12 ~k~~~C~~C~k~f~~~~-----------~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSS-----------ILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCCEECSSSCCEESSHH-----------HHHHHHHGGGCSCCEECSSSCCEES
T ss_pred CCCccCCCCCCccCCHH-----------HHHHHHHhcCCCCCeECCCCCcccC
Confidence 34688999988877642 2222222 23468999987766
No 263
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=39.07 E-value=18 Score=27.49 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=28.6
Q ss_pred CccccCCcccCCCceec--CCchHhhHHHHHHHHh----------cCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVIL--SSGHTFDRASIQRWLD----------SGHRTCPITKL 51 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~--~cgh~~c~~ci~~~~~----------~~~~~CP~c~~ 51 (372)
+..|.+|.+--. ++. .|...||..|+..-+. .+...||.|..
T Consensus 63 ~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 467888876321 111 5888999999986542 35678999963
No 264
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=38.77 E-value=17 Score=22.04 Aligned_cols=36 Identities=11% Similarity=0.333 Sum_probs=23.0
Q ss_pred CccccCCcccCCCceecCCchHhhHHHHHHHHh----cCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVILSSGHTFDRASIQRWLD----SGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~----~~~~~CP~c~~~~~ 54 (372)
.|.|++|...|..+. -+..... ...+.|+.|+..+.
T Consensus 2 ~~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 2 SFVCEVCTRAFARQE-----------HLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp CBCCTTTCCCBSCHH-----------HHHHHHHTTTSSCSEECTTTCCEES
T ss_pred cCcCCCCccccCCHH-----------HHHHHHHHhCCCCCccCCCCCCccC
Confidence 478999988887652 2222222 12457999987766
No 265
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=38.77 E-value=9.5 Score=23.32 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=10.2
Q ss_pred CCCCCccccCCcc
Q 017402 4 QFPDDFKCPISLE 16 (372)
Q Consensus 4 ~~~~~~~C~ic~~ 16 (372)
.+++++.||+|..
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 4778888998875
No 266
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=38.46 E-value=2e+02 Score=26.70 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=73.9
Q ss_pred HHHHHHHHhhc----CCChhHHHHHHHHHhcCCCCccccccccccCChHHHHHHHhcCChHHHHHHHHHHHHhcccccch
Q 017402 133 VSAVLNCLKIH----SDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVAALRFGSPDCRAIAATIITSLAVVEVNK 208 (372)
Q Consensus 133 i~~L~~lL~~~----~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~~L~~~~~~~~~~a~~~L~~ls~~~~~~ 208 (372)
++.+-++|.+. .-+++....-+..+...+. -+.+.+.=-++.++..|.+++..+...++.++. ....+
T Consensus 75 l~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~----Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~----~s~pk 146 (500)
T 3vld_A 75 LATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMAD----FDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE----NSQPK 146 (500)
T ss_dssp HHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSC----HHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH----TCSSG
T ss_pred HHHHHHHHcCCccccccCHHHHHHHHHHHHhcCC----HHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc----ccCch
Confidence 45666666421 1234444445555544432 233445556788999999999999999999988 34567
Q ss_pred hhhccccchHHHHHHHhhcCCch-H-HHHHHHHHHHhhcCCCchhHHHHhc
Q 017402 209 ATIGDYPYAINALVSLLQNGKLI-R-EKKEAATALYALTSFPENRKRVVSC 257 (372)
Q Consensus 209 ~~i~~~~g~i~~Lv~ll~~~~~~-~-~~~~a~~aL~~L~~~~~~~~~i~~~ 257 (372)
..+.. .+++..|++++-+.+.+ . +....=.++..|++++=.+..+.+.
T Consensus 147 ~lfa~-t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~n 196 (500)
T 3vld_A 147 GLFAT-SNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLFDN 196 (500)
T ss_dssp GGGTT-SSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHTT
T ss_pred hHhcc-ChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 77777 79999999999887552 2 3334444555676554355555543
No 267
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=38.38 E-value=28 Score=22.19 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=24.6
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHh----cCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD----SGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~----~~~~~CP~c~~~~~ 54 (372)
...|.|++|...|..... +.+... ...+.|+.|...+.
T Consensus 15 ~~~~~C~~C~k~f~~~~~-----------l~~H~~~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGN-----------LASHKTVHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCSBCCTTSSCCBSCHHH-----------HHHHHHHHCCCCSEECTTTCCEES
T ss_pred CCCeECCCCCceeCCHHH-----------HHHHHHHcCCCCCEECCCCCchhC
Confidence 456889999988877422 222221 23458999988776
No 268
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=38.20 E-value=8.7 Score=37.34 Aligned_cols=49 Identities=31% Similarity=0.459 Sum_probs=37.2
Q ss_pred CCCCccccCCcccCCCce--------e--cCCchHh--------------------hHHHHHHHHhc-------CCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPV--------I--LSSGHTF--------------------DRASIQRWLDS-------GHRTCP 47 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv--------~--~~cgh~~--------------------c~~ci~~~~~~-------~~~~CP 47 (372)
+++--+|+-|+.-|.||- + +.||..| |..|-.+|-.- ....||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 567789999998888873 2 2478665 99999998853 234699
Q ss_pred CCCCCC
Q 017402 48 ITKLPL 53 (372)
Q Consensus 48 ~c~~~~ 53 (372)
.|+..+
T Consensus 94 ~CGP~l 99 (657)
T 3ttc_A 94 ECGPYL 99 (657)
T ss_dssp TTSCCE
T ss_pred ccCccc
Confidence 999877
No 269
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=37.98 E-value=8.8 Score=38.18 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=45.8
Q ss_pred CCCCccccCCcccCCCce--------e--cCCchHh--------------------hHHHHHHHHhc-------CCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPV--------I--LSSGHTF--------------------DRASIQRWLDS-------GHRTCP 47 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv--------~--~~cgh~~--------------------c~~ci~~~~~~-------~~~~CP 47 (372)
+++--+|+-|+.-|.||- + +.||..| |..|-.+|-.- ....||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 467789999999888873 2 2477665 99999998853 123699
Q ss_pred CCCCCCCC---CCCCCccHHHHHHHHHHhc
Q 017402 48 ITKLPLPD---QPSLIPNHALRSLISNFTR 74 (372)
Q Consensus 48 ~c~~~~~~---~~~~~~n~~l~~~i~~~~~ 74 (372)
.|+..+.- .........+....+.+.+
T Consensus 183 ~CGP~l~l~~~~~~~~~~~~i~~a~~~l~~ 212 (772)
T 4g9i_A 183 VCGPSYRLYTSDGQEIYGDPLRKAAELIDK 212 (772)
T ss_dssp TTSCCEEEESSSCBCCTTHHHHHHHHHHTT
T ss_pred cCCceEEEEcCCCCeechHHHHHHHHHHHc
Confidence 99987641 1122234455555555544
No 270
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=37.84 E-value=2.2 Score=29.39 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=17.2
Q ss_pred cccCCcccCC-----CceecC-CchHhhHHHHHHH
Q 017402 10 KCPISLEIMS-----DPVILS-SGHTFDRASIQRW 38 (372)
Q Consensus 10 ~C~ic~~~~~-----~Pv~~~-cgh~~c~~ci~~~ 38 (372)
-||-|...+. .+|+-+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3997777542 224544 7777766665544
No 271
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=37.71 E-value=9.9 Score=23.57 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=9.4
Q ss_pred CCCCccccCCcc
Q 017402 5 FPDDFKCPISLE 16 (372)
Q Consensus 5 ~~~~~~C~ic~~ 16 (372)
+++++.||+|..
T Consensus 33 lP~dw~CP~Cga 44 (55)
T 2v3b_B 33 IPADWVCPDCGV 44 (55)
T ss_dssp SCTTCCCTTTCC
T ss_pred CCCCCcCCCCCC
Confidence 677888888875
No 272
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.63 E-value=53 Score=18.17 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=10.7
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eq4_A 11 KLYNCKECGKSFSRA 25 (46)
T ss_dssp CCCCBTTTTBCCSCH
T ss_pred CCeECCCCCCccCch
Confidence 457788888777764
No 273
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=37.55 E-value=1.9 Score=29.28 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=21.9
Q ss_pred CccccC--CcccCC-----Cceec------CCchHhhHHHHHHHH
Q 017402 8 DFKCPI--SLEIMS-----DPVIL------SSGHTFDRASIQRWL 39 (372)
Q Consensus 8 ~~~C~i--c~~~~~-----~Pv~~------~cgh~~c~~ci~~~~ 39 (372)
-..||- |...+. .+|+- .||+.||..|.+.|-
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 456886 776543 23554 589999999987764
No 274
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=36.78 E-value=11 Score=24.68 Aligned_cols=45 Identities=7% Similarity=-0.045 Sum_probs=30.6
Q ss_pred CCccccCCcccCCC-ceecCCchHhhH-HHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSD-PVILSSGHTFDR-ASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~-Pv~~~cgh~~c~-~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
+=|.|..|...+.+ +....=|..||. .|..+.+ ...|..|+....
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~~ 72 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAES 72 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCcee
Confidence 44889999988765 455556778888 5886644 345888875443
No 275
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=36.68 E-value=2.4e+02 Score=25.57 Aligned_cols=101 Identities=7% Similarity=-0.097 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHHhhcCCCch-hHHHHhcCchHHHHHHHh--------hh----HHHHHHHHHHHhCCHhHHHHHHhccc
Q 017402 230 LIREKKEAATALYALTSFPEN-RKRVVSCGAVPILMRLAD--------AG----LERAVEVLSILVKCKEGREEMMRVSG 296 (372)
Q Consensus 230 ~~~~~~~a~~aL~~L~~~~~~-~~~i~~~g~v~~L~~ll~--------~~----~e~a~~~L~~L~~~~~~~~~i~~~~g 296 (372)
.+..+..++++++|+..++.. +..+........++..+. .. +-.+..++.|++..-.... .. -.
T Consensus 275 ~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~--~~-~e 351 (425)
T 3pst_A 275 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--SD-LE 351 (425)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC--SC-TT
T ss_pred ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc--ch-HH
Confidence 347888999999999999884 444433223455565541 11 2234456667766321100 00 12
Q ss_pred hHHHHHHHHh---------cCChhHHHhHHHHHHHHhcCCHHHHHH
Q 017402 297 CVGVFVKMLK---------TGSSRAVQCSLFTLSCLCCCSQEICGD 333 (372)
Q Consensus 297 ~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~ 333 (372)
....+++.+. ..+++..-.++.+|.+|...+++.+..
T Consensus 352 l~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~ 397 (425)
T 3pst_A 352 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQF 397 (425)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4456666665 236677788888888888765655544
No 276
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.57 E-value=49 Score=18.41 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=11.2
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytt_A 11 KPYQCSECGKSFSGS 25 (46)
T ss_dssp CTTCCSSSCCCCSSH
T ss_pred CCeeCCCCCcccCCH
Confidence 457888888877765
No 277
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.28 E-value=56 Score=18.05 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=11.0
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eov_A 11 KPYKCSDCGKSFTWK 25 (46)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred CCccCCccChhhCCH
Confidence 457888888877764
No 278
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=35.92 E-value=6.3 Score=27.71 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=30.2
Q ss_pred CccccCCcccCCCc-eecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDP-VILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~~~P-v~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
=|.|..|...+.+. ....=|..||..|..+. ....|..|++++.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~ 77 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKDNKILCNKCTTRE---DSPKCKGCFKAIV 77 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEETTEEECHHHHTTC---CCCBCSSSCCBCC
T ss_pred CCcccccCCCCCcCeeECcCCEEEChhHhhhh---cCCccccCCCccc
Confidence 37888888877643 34446778888887542 2457999988776
No 279
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=35.78 E-value=1.8 Score=37.92 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=29.4
Q ss_pred CCccccCCcccCCCceec----CCc--hHhhHHHHHHHHhcCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVIL----SSG--HTFDRASIQRWLDSGHRTCPITKLP 52 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~----~cg--h~~c~~ci~~~~~~~~~~CP~c~~~ 52 (372)
..-.||+|+..-.--++. .-| +-+|..|-.+|--. ...||.|+..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 457899999854333332 234 34577787777543 6689999875
No 280
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.64 E-value=39 Score=23.23 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=21.7
Q ss_pred CccccCCcccC-CCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 8 DFKCPISLEIM-SDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 8 ~~~C~ic~~~~-~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.|.|+.|...| .....+. .-+... ....+.|+.|+..|.
T Consensus 34 ~~~C~~C~k~F~~~~~~L~-------~H~~~h-~~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGLK-------KHMENC-KQEMFTCHHCGKQLR 73 (96)
T ss_dssp CEECTTTCSCEESSHHHHH-------HHHHHH-CCCCCCCSSSCCCCS
T ss_pred CcCCCCCCCCcccCHHHHH-------HHHHHH-CCCCeECCCCCCeeC
Confidence 46777777776 4431110 001112 334678999988776
No 281
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=35.30 E-value=61 Score=22.14 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=12.6
Q ss_pred CCCCccccCCcccCCCc
Q 017402 5 FPDDFKCPISLEIMSDP 21 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~P 21 (372)
-+..|.|++|...|...
T Consensus 14 ~~~~~~C~~C~~~f~~~ 30 (106)
T 2ee8_A 14 TKKEFICKFCGRHFTKS 30 (106)
T ss_dssp CCCCCBCSSSCCBCSSH
T ss_pred CCcCeECCCCCCccCCH
Confidence 34568899999888654
No 282
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.18 E-value=57 Score=18.04 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=10.8
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2epz_A 11 KPFDCIDCGKAFSDH 25 (46)
T ss_dssp CSBCCTTTCCCBSSH
T ss_pred CCeECCCCCceeCCH
Confidence 457788888777664
No 283
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.93 E-value=28 Score=23.92 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=24.6
Q ss_pred CCccccCCcccCC-CceecCCchHhhHHHHHHHHh-cCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMS-DPVILSSGHTFDRASIQRWLD-SGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~-~Pv~~~cgh~~c~~ci~~~~~-~~~~~CP~c~~~~~ 54 (372)
..|.|++|...|. ....+.- |. ...-. ...+.|+.|...|.
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~~-H~------~~h~~~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLKK-HM------EVCQKLQDALKCQHCRKQFK 65 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHHH-HH------HHHHHHHHHHSCSSSCCCCS
T ss_pred CCcCCCCCCCChhhhHHHHHH-HH------HHHcCCCCCEECCCCCCccC
Confidence 4689999999887 6533221 11 01111 22468999988776
No 284
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.68 E-value=58 Score=18.00 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=10.7
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2ytn_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred cCeECCCCCCeeCCH
Confidence 457788888777664
No 285
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.49 E-value=63 Score=17.81 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=10.2
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytr_A 11 KPYKCNECGKAFSQT 25 (46)
T ss_dssp CTTCCTTTCCCCSSH
T ss_pred cCcCCCCCCCccCCH
Confidence 347788877777664
No 286
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.47 E-value=64 Score=17.87 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=10.9
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytq_A 11 KPYGCSECGKAFSSK 25 (46)
T ss_dssp CSCBCSSSCCBCSCH
T ss_pred CCcCCCccChhhCCh
Confidence 457888888877764
No 287
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=33.26 E-value=13 Score=24.36 Aligned_cols=14 Identities=29% Similarity=0.664 Sum_probs=10.6
Q ss_pred CCCCCccccCCccc
Q 017402 4 QFPDDFKCPISLEI 17 (372)
Q Consensus 4 ~~~~~~~C~ic~~~ 17 (372)
.+++++.||+|..-
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 36788889988863
No 288
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.82 E-value=49 Score=18.41 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=11.1
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em8_A 11 KPYKCVECGKGYKRR 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECcccCchhCCH
Confidence 457888888877764
No 289
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.66 E-value=65 Score=17.83 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=10.9
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2elz_A 11 KPYKCEDCGKGYNRR 25 (46)
T ss_dssp SSCBCSSSCCBCSSH
T ss_pred CCeeCcccCchhCCH
Confidence 457888888877664
No 290
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.56 E-value=65 Score=17.73 Aligned_cols=15 Identities=13% Similarity=0.053 Sum_probs=10.7
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eop_A 11 KPHECRECGKSFSFN 25 (46)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCeeCCCCCchhCCH
Confidence 457788888777664
No 291
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.56 E-value=53 Score=18.21 Aligned_cols=15 Identities=13% Similarity=0.457 Sum_probs=10.7
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eml_A 11 KPYECSVCGKAFSHR 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeeCCCcCCccCCH
Confidence 457888888777663
No 292
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=32.49 E-value=10 Score=37.55 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=45.2
Q ss_pred CCCCccccCCcccCCCce--------e--cCCchHh--------------------hHHHHHHHHhc-------CCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPV--------I--LSSGHTF--------------------DRASIQRWLDS-------GHRTCP 47 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv--------~--~~cgh~~--------------------c~~ci~~~~~~-------~~~~CP 47 (372)
+++--+|+-|+.-|.||- + +.||..| |..|-.+|-.- ....||
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~ 187 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACF 187 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCT
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCC
Confidence 467789999998888873 2 2478654 99999998752 234699
Q ss_pred CCCCCCCCCCCCC-ccHHHHHHHHHHhcC
Q 017402 48 ITKLPLPDQPSLI-PNHALRSLISNFTRT 75 (372)
Q Consensus 48 ~c~~~~~~~~~~~-~n~~l~~~i~~~~~~ 75 (372)
.|+..+. ..+-. ....+...++.+..-
T Consensus 188 ~CGP~l~-l~~~~~~~~~i~~aa~~L~~G 215 (761)
T 3vth_A 188 DCGPSLS-FVGEGCFDDEIKCVAKALKEG 215 (761)
T ss_dssp TTSCCEE-EESSCCCSCHHHHHHHHHHTT
T ss_pred ccCCeeE-EeCCCCchHHHHHHHHHHHcC
Confidence 9998764 21110 223466666555543
No 293
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.46 E-value=50 Score=18.33 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=11.1
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emp_A 11 KPYMCNECGKAFSVY 25 (46)
T ss_dssp CSEECSSSCCEESCH
T ss_pred cCeECCCCCchhCCH
Confidence 457888888877664
No 294
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.40 E-value=11 Score=24.66 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=9.7
Q ss_pred cccCCcccCCCceecCCchHh
Q 017402 10 KCPISLEIMSDPVILSSGHTF 30 (372)
Q Consensus 10 ~C~ic~~~~~~Pv~~~cgh~~ 30 (372)
.|+-|.+...+.++..-|..|
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~w 27 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHY 27 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCB
T ss_pred CcccCCCEecCeeEEeCCCCC
Confidence 455555554444333344433
No 295
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=32.06 E-value=1.6e+02 Score=22.18 Aligned_cols=92 Identities=18% Similarity=0.329 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhh----cCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH
Q 017402 106 KLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKI----HSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA 181 (372)
Q Consensus 106 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~ 181 (372)
+.+-+..+..... ....+..+.+.|++..+-.-|.- +-.+..++...+.+|.+|..+ ++.+.+.|. ..++.
T Consensus 37 KlklL~~V~~~l~-k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~---~e~Lk~Sgl-Gkvv~ 111 (145)
T 2xpp_A 37 KIENVEEISDILM-SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH---KEHLVTSGV-GKIVY 111 (145)
T ss_dssp HHHHHHHHHHHHT-CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC---HHHHHHHCH-HHHHH
T ss_pred HHhhHHHHHHHHh-hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC---HHHhhcCCC-Ccchh
Confidence 3444445555444 34478899999999998888852 113567999999999999644 455555554 44445
Q ss_pred HH-hc--CChHHHHHHHHHHHHhc
Q 017402 182 AL-RF--GSPDCRAIAATIITSLA 202 (372)
Q Consensus 182 ~L-~~--~~~~~~~~a~~~L~~ls 202 (372)
++ ++ .+++.+..|-.++..-+
T Consensus 112 ~l~k~~~et~~nk~la~~Li~~Ws 135 (145)
T 2xpp_A 112 FYSINPKESKEVRASAKALVQKWT 135 (145)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred hhhcCCccCHHHHHHHHHHHHHHH
Confidence 55 44 36777777776665443
No 296
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.06 E-value=7.8 Score=24.67 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=22.2
Q ss_pred CCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..+.|++|...|.....+.- .....|+.|+..+.
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~ 50 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSC 50 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCS
T ss_pred CCeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhc
Confidence 45889999988876544332 23556777766665
No 297
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.96 E-value=58 Score=17.98 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=11.1
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~F~~~ 25 (46)
T 2eoe_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CSSEETTTTEECSSH
T ss_pred CCeECCCcChhhCCH
Confidence 457888888877764
No 298
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.63 E-value=25 Score=22.34 Aligned_cols=32 Identities=6% Similarity=0.153 Sum_probs=19.0
Q ss_pred CccccCCcccCCC-ceecCCchHhhHHHHHHHH
Q 017402 8 DFKCPISLEIMSD-PVILSSGHTFDRASIQRWL 39 (372)
Q Consensus 8 ~~~C~ic~~~~~~-Pv~~~cgh~~c~~ci~~~~ 39 (372)
=|.|..|...+.. .....-|..||..|..+.+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 3667777766643 2334456667777776655
No 299
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=31.60 E-value=10 Score=25.11 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=29.8
Q ss_pred CCccccCCcccCCC-ceec--CCchHhhHHHHHHHHhc---CCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSD-PVIL--SSGHTFDRASIQRWLDS---GHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~-Pv~~--~cgh~~c~~ci~~~~~~---~~~~CP~c~~~~~ 54 (372)
+...|++|...... ..+. .|...|+..|+.--... +...||.|...+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 45679999987543 2332 37767777887532221 3568999976544
No 300
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.42 E-value=33 Score=22.02 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=24.4
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHh----cCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD----SGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~----~~~~~CP~c~~~~~ 54 (372)
+..|.|++|...|... .-+.+... ...+.|+.|...+.
T Consensus 16 ~~~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHS-----------SDLSKHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCH-----------HHHHHHHTTTCCSCSEECSSSCCEES
T ss_pred CCCEECCCCCcccCCH-----------HHHHHHHHHcCCCcCeeCCCCCCccC
Confidence 3568899999888764 22333332 12457999987766
No 301
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.41 E-value=69 Score=17.65 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=10.3
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eoq_A 11 KPFKCDICGKSFCGR 25 (46)
T ss_dssp CSCCCSSSCCCCSSH
T ss_pred CCcCCCcCCchhCCH
Confidence 357788887777663
No 302
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.39 E-value=24 Score=22.56 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=12.4
Q ss_pred ccccCCcccCCCc-eecCCchHhhHHHHHHHH
Q 017402 9 FKCPISLEIMSDP-VILSSGHTFDRASIQRWL 39 (372)
Q Consensus 9 ~~C~ic~~~~~~P-v~~~cgh~~c~~ci~~~~ 39 (372)
|.|..|...+.+- ....-|..||..|..+.+
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 4444444443332 112233444544444433
No 303
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=31.34 E-value=1.9e+02 Score=25.59 Aligned_cols=101 Identities=7% Similarity=-0.101 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHhhcCCCch-hHHHHhcCchHHHHHHHh--------hh----HHHHHHHHHHHhCCHhHHHHHHhccc
Q 017402 230 LIREKKEAATALYALTSFPEN-RKRVVSCGAVPILMRLAD--------AG----LERAVEVLSILVKCKEGREEMMRVSG 296 (372)
Q Consensus 230 ~~~~~~~a~~aL~~L~~~~~~-~~~i~~~g~v~~L~~ll~--------~~----~e~a~~~L~~L~~~~~~~~~i~~~~g 296 (372)
.+..+..++++++|+..++.. +..+........+++.+. .. +-.+..++.|++....... ....
T Consensus 212 ~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~~e 288 (362)
T 3l3f_X 212 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLE 288 (362)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SCTT
T ss_pred ChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHH
Confidence 347888999999999999884 444432212333444431 11 2234456667766321100 0012
Q ss_pred hHHHHHHHHh---------cCChhHHHhHHHHHHHHhcCCHHHHHH
Q 017402 297 CVGVFVKMLK---------TGSSRAVQCSLFTLSCLCCCSQEICGD 333 (372)
Q Consensus 297 ~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~ 333 (372)
....+++.+. ..+++..-.++.+|.++...++..++.
T Consensus 289 l~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~~ 334 (362)
T 3l3f_X 289 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQF 334 (362)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHT
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4456666665 246677788888888888765655433
No 304
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.31 E-value=25 Score=22.09 Aligned_cols=38 Identities=11% Similarity=0.044 Sum_probs=24.7
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHh----cCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD----SGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~----~~~~~CP~c~~~~~ 54 (372)
...|.|++|...|.... -+.+... ...+.|+.|...+.
T Consensus 7 ~~~~~C~~C~k~f~~~~-----------~L~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKA-----------ALRIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp CCSEECSSSSCEESSHH-----------HHHHHHGGGCCSCSEECSSSSCEES
T ss_pred CCCeECCCCCcccCCHH-----------HHHHHHHHcCCCCCEeCCCCCCccC
Confidence 45688999988887642 2333332 12457999987766
No 305
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.31 E-value=56 Score=18.07 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=10.7
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ep2_A 11 KPYECSICGKSFTKK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCcCCCCCCcccCCH
Confidence 457888888777664
No 306
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.23 E-value=47 Score=18.43 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=11.0
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emh_A 11 RPYICTVCGKAFTDR 25 (46)
T ss_dssp CSEECTTTCCEESSH
T ss_pred CCcCCCCCCchhCCH
Confidence 457888888777764
No 307
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.89 E-value=21 Score=22.84 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=17.0
Q ss_pred ccccCCcccCCC-ceecCCchHhhHHHHHHHH
Q 017402 9 FKCPISLEIMSD-PVILSSGHTFDRASIQRWL 39 (372)
Q Consensus 9 ~~C~ic~~~~~~-Pv~~~cgh~~c~~ci~~~~ 39 (372)
|.|..|...+.+ +....=|..||..|..+.+
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 566666665543 2333445566666665433
No 308
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.86 E-value=54 Score=18.21 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=10.8
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2em5_A 11 KSHQCHECGRGFTLK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECCcCCCccCCH
Confidence 457888888777664
No 309
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=30.51 E-value=46 Score=23.28 Aligned_cols=49 Identities=29% Similarity=0.544 Sum_probs=35.5
Q ss_pred CCCCccccCCcccCCCceecC-Cch-----HhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPVILS-SGH-----TFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~-cgh-----~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.++.++|||.++.-.+-|... .+. -|....+.+....+ ..=|..|++++
T Consensus 24 ~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~-~~HPLSREpit 78 (102)
T 2kkx_A 24 PLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG-LPHPLTREPIT 78 (102)
T ss_dssp CTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT-CCCTTTCCCCC
T ss_pred CHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC-CCCCCccCCCC
Confidence 567889999999888777652 111 27888888888764 33588888887
No 310
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=30.40 E-value=3.3e+02 Score=25.22 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=74.7
Q ss_pred ChHHHHHHHHHHHHHhhcChHHHHHHhhcCCHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCccccccccccCChHHHHH
Q 017402 102 PLESKLESLTQLTKLSKRDSASRRKLTESGAVSAVLNCLKIHSDGFTLQEKALSLLLNLSLDDDNKVGLVAEGAVSRVVA 181 (372)
Q Consensus 102 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~lv~ 181 (372)
|++-..+-+..+...+.. +.+.+.=-++.++..|. ++.+.+...++.+|. .+..+..+...+.+..++.
T Consensus 92 D~~~Li~Ll~~il~~~~F-----d~VLevysve~i~~aL~--S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~ 160 (500)
T 3vld_A 92 NYDYLLDVVDKLVPMADF-----DDVLEVYSAEDLVKALR--SEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLD 160 (500)
T ss_dssp CHHHHHHHHHHHHHHSCH-----HHHHHHSCHHHHHHHHT--SSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCH-----HHHHHhCCHHHHHHHHh--cCChHHHHHHHHHhc----ccCchhHhccChHHHHHHH
Confidence 345444444444444432 23344446888999999 778999999999998 5556778888999999999
Q ss_pred HHhcCChH---HHHHHHHHHHHhcccccchhhhccccchHHHHHHHhhcCC
Q 017402 182 ALRFGSPD---CRAIAATIITSLAVVEVNKATIGDYPYAINALVSLLQNGK 229 (372)
Q Consensus 182 ~L~~~~~~---~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~ 229 (372)
++-..+.. +....=.++..|+.++=.+..+.+ ...|.|...=+..+
T Consensus 161 lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~--nnl~lL~~vK~~~~ 209 (500)
T 3vld_A 161 ILFDEKVENDKLITAIEKALERLSTDELIRRRLFD--NNLPYLVSVKGRME 209 (500)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHT--TTHHHHHHHHHHCC
T ss_pred HHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHH--HhHHHHHHHhcCCC
Confidence 99765432 555555677777655434555554 34565555544433
No 311
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=30.26 E-value=73 Score=17.58 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=11.0
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emk_A 11 KPYECKECGKAFSQT 25 (46)
T ss_dssp CSCBCSSSCCBCSCH
T ss_pred CceECCCCCchhCCH
Confidence 457888888877764
No 312
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=30.23 E-value=25 Score=23.43 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..|.|++|...|..+..+.- | +........+.|+.|+..+.
T Consensus 2 k~~~C~~C~k~f~~~~~L~~-H------~~~H~~~~~~~C~~C~k~f~ 42 (88)
T 1llm_C 2 KPFQCRICMRNFSRSDHLTT-H------IRTHTGEKPFACDICGRKFA 42 (88)
T ss_dssp CCEECTTTCCEESCHHHHHH-H------HHHHHCCCCEECTTTCCEES
T ss_pred CCCcCCCCCCccCCHHHHHH-H------HHHcCCCCCccCCCCCCccC
Confidence 35789999988877522110 0 11112233568999988776
No 313
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.05 E-value=18 Score=25.03 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=28.4
Q ss_pred CCCCccccCCcccCCCceecC-----Cc-hHhhHHHHHHHHhc---CCCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPVILS-----SG-HTFDRASIQRWLDS---GHRTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~-----cg-h~~c~~ci~~~~~~---~~~~CP~c~~~~~ 54 (372)
..+...| +|.+..... .+. |. ..|+..|+. +.. +...||.|+....
T Consensus 33 ~~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp SCCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 3456778 999875443 343 33 357777774 222 4568999976543
No 314
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.74 E-value=63 Score=17.81 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=10.7
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eme_A 11 KPYVCDYCGKAFGLS 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECCCCChhhCCH
Confidence 457888888777664
No 315
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=29.64 E-value=10 Score=28.16 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=20.3
Q ss_pred ccccCCcccCCCc---ee-cCCchHhhHHHHHH
Q 017402 9 FKCPISLEIMSDP---VI-LSSGHTFDRASIQR 37 (372)
Q Consensus 9 ~~C~ic~~~~~~P---v~-~~cgh~~c~~ci~~ 37 (372)
-.|.+|...|.-- .- ..||+.||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4699999877522 11 36999999988643
No 316
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.62 E-value=7.6 Score=27.63 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=17.2
Q ss_pred CCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 19 SDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 19 ~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
..|.-..||++|+ .- ...+..||.|+..--
T Consensus 66 ~p~~C~~CG~~F~-----~~-~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 66 KPAQCRKCGFVFK-----AE-INIPSRCPKCKSEWI 95 (105)
T ss_dssp CCCBBTTTCCBCC-----CC-SSCCSSCSSSCCCCB
T ss_pred ECcChhhCcCeec-----cc-CCCCCCCcCCCCCcc
Confidence 3444457888871 00 112458999986543
No 317
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=29.56 E-value=42 Score=24.16 Aligned_cols=13 Identities=23% Similarity=0.651 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCCC
Q 017402 42 GHRTCPITKLPLP 54 (372)
Q Consensus 42 ~~~~CP~c~~~~~ 54 (372)
..+.|+.|+..+.
T Consensus 99 ~~~~C~~C~k~f~ 111 (129)
T 2wbt_A 99 HTKVCPVCKKEFT 111 (129)
T ss_dssp CCCBCTTTCCBCS
T ss_pred CCCCCCCCCcccC
Confidence 3456777766554
No 318
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=29.23 E-value=30 Score=23.20 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=12.6
Q ss_pred CCCCccccCCcccCCCc
Q 017402 5 FPDDFKCPISLEIMSDP 21 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~P 21 (372)
-...|.|++|...|...
T Consensus 4 ~~~~~~C~~C~~~f~~~ 20 (95)
T 2yt9_A 4 GSSGVACEICGKIFRDV 20 (95)
T ss_dssp CCSCEECSSSCCEESSS
T ss_pred CCCCeECCCCCCccCCh
Confidence 34568899998887654
No 319
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=28.96 E-value=1.5e+02 Score=22.63 Aligned_cols=70 Identities=9% Similarity=-0.009 Sum_probs=49.2
Q ss_pred ChHHHHHHHh-cCChHHHHHHHHHHHHhcccc--cchhhhccccchHHH-HHHHhhcCC--chHHHHHHHHHHHhhc
Q 017402 175 AVSRVVAALR-FGSPDCRAIAATIITSLAVVE--VNKATIGDYPYAINA-LVSLLQNGK--LIREKKEAATALYALT 245 (372)
Q Consensus 175 ~i~~lv~~L~-~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~-Lv~ll~~~~--~~~~~~~a~~aL~~L~ 245 (372)
++..|.+-|+ +.++.++..|+.+|-.+..+- .....|.. ...+.. |++++.... +..++..++..|..-+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~-~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVAS-QDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhh-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 4566777776 478888888888888887664 34555666 688888 888885322 2378888887776544
No 320
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=28.83 E-value=58 Score=22.92 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=12.5
Q ss_pred CCCccccCCcccCCCc
Q 017402 6 PDDFKCPISLEIMSDP 21 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~P 21 (372)
...+.|++|...|...
T Consensus 5 ~~~~~C~~C~~~f~~~ 20 (124)
T 2dlq_A 5 SSGVECPTCHKKFLSK 20 (124)
T ss_dssp CSSCCCTTTCCCCSSH
T ss_pred CCCCCCCCCCCcCCCH
Confidence 4568899999888764
No 321
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.64 E-value=64 Score=17.82 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=10.8
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytd_A 11 KPYKCSECGKAFHRH 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCCCCCeeCCh
Confidence 457888888777664
No 322
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.58 E-value=62 Score=17.88 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=10.6
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ene_A 11 KPYKCNECGKVFRHN 25 (46)
T ss_dssp SSEECSSSCCEESSH
T ss_pred CCeECCCCCchhCCh
Confidence 457888887777663
No 323
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=28.50 E-value=1e+02 Score=32.04 Aligned_cols=105 Identities=7% Similarity=0.014 Sum_probs=60.1
Q ss_pred ChhHHHHHHHHHhcCCCC-ccccccccccCChHHHHHHHhcC---ChH--HHHHHHHHHHHhcccccchhhhccccchHH
Q 017402 146 GFTLQEKALSLLLNLSLD-DDNKVGLVAEGAVSRVVAALRFG---SPD--CRAIAATIITSLAVVEVNKATIGDYPYAIN 219 (372)
Q Consensus 146 ~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~lv~~L~~~---~~~--~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~ 219 (372)
+-...+.++.+++.++.. .+..+.-.=..+++.|+.+.... +.. ++...+++++..+.--.....+.. ..+.
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~--~vl~ 569 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK--TVVN 569 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH--HHHH
Confidence 466789999999999743 11111111123455555555443 112 223344566655432222222322 5777
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHhhcCCCchhHHHH
Q 017402 220 ALVSLLQNGKLIREKKEAATALYALTSFPENRKRVV 255 (372)
Q Consensus 220 ~Lv~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 255 (372)
.|++.+.+.+. .++..|+.++..+|. +++..++
T Consensus 570 ~L~~~m~~~~~-~vq~aA~~af~~i~~--~C~~~lv 602 (1073)
T 3gjx_A 570 KLFEFMHETHD-GVQDMACDTFIKIAQ--KCRRHFV 602 (1073)
T ss_dssp HHHHHTTCCST-THHHHHHHHHHHHHH--HTGGGGT
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHHHHH--HHHHHHh
Confidence 77777777666 899999999999984 3444444
No 324
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=28.46 E-value=70 Score=17.67 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=10.7
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2el6_A 11 NPYKCSQCEKSFSGK 25 (46)
T ss_dssp CSEECSSSSCEESSH
T ss_pred CCeECCCCCcccCCH
Confidence 357888888777663
No 325
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.33 E-value=65 Score=17.74 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=10.9
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emm_A 11 RPHKCNECGKSFIQS 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeeCCCCChhhCCH
Confidence 457888888777664
No 326
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.16 E-value=50 Score=18.33 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=10.9
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emy_A 11 NPYECHECGKAFSRK 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred cCcCCCCCCcccCcH
Confidence 457888888777664
No 327
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.14 E-value=61 Score=17.94 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=11.1
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2eoo_A 11 RPYGCNECGKNFGRH 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCEEccccCcccCCH
Confidence 457888888877764
No 328
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.05 E-value=33 Score=22.06 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=25.0
Q ss_pred CCCccccCCcccCCCceecCCchHhhHHHHHHHHh---cCCCCCCCCCCCCC
Q 017402 6 PDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD---SGHRTCPITKLPLP 54 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~---~~~~~CP~c~~~~~ 54 (372)
+..|.|++|...|.....+.- | +..... ...+.|+.|...|.
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~-H------~~~h~~~~~~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNW-H------QRKHAETVAALRFPCEFCGKRFE 49 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHH-H------HHHHHHHTTTCCEECTTTCCEES
T ss_pred CcCeECCCCCCeeCCHHHHHH-H------HHHhhccCCCcccCCCCCCchhC
Confidence 456889999988876522211 1 111111 23568999987766
No 329
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.91 E-value=17 Score=22.96 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=11.2
Q ss_pred ccccCCcccCCC-ceecCCchHhhHHHHH
Q 017402 9 FKCPISLEIMSD-PVILSSGHTFDRASIQ 36 (372)
Q Consensus 9 ~~C~ic~~~~~~-Pv~~~cgh~~c~~ci~ 36 (372)
|.|..|...+.. +....-|..||..|..
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 60 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETHYN 60 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHHHH
Confidence 444444444332 1222233444444443
No 330
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.86 E-value=56 Score=18.10 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=10.9
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ysp_A 11 KPYKCEKCGKGYNSK 25 (46)
T ss_dssp CSEEETTTTEEESCH
T ss_pred CCeECCCCCCccCCH
Confidence 457888888777664
No 331
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=27.81 E-value=65 Score=17.79 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=10.4
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ema_A 11 KRYKCNECGKVFSRN 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred cCcCCCCCcchhCCH
Confidence 457788887776653
No 332
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=27.55 E-value=61 Score=17.88 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=10.5
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2el4_A 11 KPYGCSQCAKTFSLK 25 (46)
T ss_dssp CSEECSSSSCEESSH
T ss_pred CceECCCCCchhCCH
Confidence 457788887777663
No 333
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=27.43 E-value=55 Score=23.42 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=27.6
Q ss_pred CCCccccCCcccC-------CCceec--CCchHhhHHHHH------HHHhcCCCCCCCCC
Q 017402 6 PDDFKCPISLEIM-------SDPVIL--SSGHTFDRASIQ------RWLDSGHRTCPITK 50 (372)
Q Consensus 6 ~~~~~C~ic~~~~-------~~Pv~~--~cgh~~c~~ci~------~~~~~~~~~CP~c~ 50 (372)
...-.|.+|..-= .++.+. .|+..|+..|+. .....+...||.|+
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4456799997641 233432 488888888884 12344566787774
No 334
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.35 E-value=61 Score=17.90 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=10.8
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em7_A 11 KPYKCEECGKGFICR 25 (46)
T ss_dssp CSEECSSSCCEESCH
T ss_pred cCccCCCccchhCCH
Confidence 457888888777664
No 335
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.22 E-value=22 Score=22.89 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=12.8
Q ss_pred ccccCCcccCCC-ceecCCchHhhHHHHHH
Q 017402 9 FKCPISLEIMSD-PVILSSGHTFDRASIQR 37 (372)
Q Consensus 9 ~~C~ic~~~~~~-Pv~~~cgh~~c~~ci~~ 37 (372)
|.|..|...+.. +....=|..||..|..+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHHH
Confidence 445555544433 22223344455555443
No 336
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.07 E-value=28 Score=22.36 Aligned_cols=37 Identities=11% Similarity=0.301 Sum_probs=23.5
Q ss_pred CCccccCCcccCCCceecCCchHhhHHHHHHHHh---c---CCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMSDPVILSSGHTFDRASIQRWLD---S---GHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~---~---~~~~CP~c~~~~~ 54 (372)
..|.|++|...|.... -+..... . ..+.|+.|...+.
T Consensus 14 k~~~C~~C~k~f~~~~-----------~L~~H~~~~h~~~~~~~~C~~C~~~f~ 56 (77)
T 2ct1_A 14 KPYECYICHARFTQSG-----------TMKMHILQKHTENVAKFHCPHCDTVIA 56 (77)
T ss_dssp CSEECTTTCCEESCHH-----------HHHHHHHHHSSSSCSSEECSSSSCEES
T ss_pred CCeECCCcCchhCCHH-----------HHHHHHHHhcCCCCCccCCCCCCCccC
Confidence 4588999988887642 2223221 1 2458999987666
No 337
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.94 E-value=34 Score=22.57 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=16.5
Q ss_pred ccccCCcccCC--Cceec-CCchHhhHHHHHHHH
Q 017402 9 FKCPISLEIMS--DPVIL-SSGHTFDRASIQRWL 39 (372)
Q Consensus 9 ~~C~ic~~~~~--~Pv~~-~cgh~~c~~ci~~~~ 39 (372)
|.|..|...+. +...+ .=|..||+.|..+.+
T Consensus 42 F~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 42 FACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred CCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 55666666553 33332 345556666665544
No 338
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=26.75 E-value=1.1e+02 Score=23.41 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=46.9
Q ss_pred hHHHHHHHHhc-CChhHHHhHHHHHHHHhcCC-HHHHHHHHhcChhH-HHHHHhhc---ccHHHHHHHHHHHHHHhc
Q 017402 297 CVGVFVKMLKT-GSSRAVQCSLFTLSCLCCCS-QEICGDSRKEGVLD-ICMGLLED---DNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 297 ~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~~~-~l~~ll~~---~~~~v~~~a~~~L~~l~~ 367 (372)
++..|.+-+.. .++.++..|+.+|-.+..+. .....++.+...+. .|+.++.. ...+||++...++.....
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 56677777764 46777778888888877653 34555555444554 35666653 245899999999876553
No 339
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.74 E-value=18 Score=21.55 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=11.0
Q ss_pred cCCCCCCCCCCCCC
Q 017402 41 SGHRTCPITKLPLP 54 (372)
Q Consensus 41 ~~~~~CP~c~~~~~ 54 (372)
.+...||.|+..+.
T Consensus 10 ~~~~~CPrCn~~f~ 23 (49)
T 2e72_A 10 GGRKICPRCNAQFR 23 (49)
T ss_dssp SSCCCCTTTCCCCS
T ss_pred CCceeCCccccccc
Confidence 34568999998877
No 340
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=26.73 E-value=33 Score=30.75 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=38.0
Q ss_pred CccccCCcccCCCceec---CCchHhhHHHHHHHHhc---------CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHh
Q 017402 8 DFKCPISLEIMSDPVIL---SSGHTFDRASIQRWLDS---------GHRTCPITKLPLPDQPSLIPNHALRSLISNFT 73 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~---~cgh~~c~~ci~~~~~~---------~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~ 73 (372)
+..|-+|.+=- +=+.. .|...||..||.+++.. ....|=.|...-. ..-+.+-+..+..+..|.
T Consensus 93 ~~yCr~C~~Gg-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~-~~ll~~r~~w~~~~~~f~ 168 (386)
T 2pv0_B 93 QSYCSICCSGE-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSR-SGLLQRRRKWRSQLKAFY 168 (386)
T ss_dssp BCSCTTTCCCS-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCE-ETTEEBCSSHHHHHHHHH
T ss_pred cccceEcCCCC-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcch-HhhhhhhhhHHHHHHHHH
Confidence 45688888633 21211 58888999999998842 3568999975432 233333333334444554
No 341
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.72 E-value=86 Score=17.24 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=10.5
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (47)
T 2epx_A 11 KPYECIECGKAFIQN 25 (47)
T ss_dssp CSBCCSSSCCCBSSH
T ss_pred CCEECCccCchhCCh
Confidence 357788887777664
No 342
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.68 E-value=72 Score=17.57 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=10.7
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2ytk_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCEeCCcCCCccCCH
Confidence 457888888777664
No 343
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.58 E-value=76 Score=17.43 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=10.7
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2epw_A 11 KPCKCTECGKAFCWK 25 (46)
T ss_dssp CSEECSSSCCEESSS
T ss_pred CCeeCCCCCCccCCH
Confidence 357888888777664
No 344
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=26.53 E-value=4.5 Score=27.94 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCCCccccCCcccCC-C--ceec--CCchHhhHHHHHHHH-hcCCCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMS-D--PVIL--SSGHTFDRASIQRWL-DSGHRTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~-~--Pv~~--~cgh~~c~~ci~~~~-~~~~~~CP~c~~~~~ 54 (372)
..++..|.+|.+.-. + .+++ .|...|...|+..-. -.+...||.|.....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 456788999997642 2 2332 377678788875322 234567988865544
No 345
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.44 E-value=69 Score=17.65 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=10.4
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2eq0_A 11 KPYKCHECGKVFRRN 25 (46)
T ss_dssp CCEECTTTCCEESSH
T ss_pred CCeECCCCCchhCCH
Confidence 457788887776663
No 346
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.43 E-value=64 Score=17.80 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=11.2
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2yu8_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp SSEECSSSCCEESSS
T ss_pred CCeECCcCCchhCCH
Confidence 457888888877765
No 347
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.41 E-value=11 Score=27.67 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=20.7
Q ss_pred CCccccCCcccCCCce----ecCCchHhhHHHHHHHH
Q 017402 7 DDFKCPISLEIMSDPV----ILSSGHTFDRASIQRWL 39 (372)
Q Consensus 7 ~~~~C~ic~~~~~~Pv----~~~cgh~~c~~ci~~~~ 39 (372)
+.-.|..|...|.--. -..||..||..|-....
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 3457999998775321 23699999998865433
No 348
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.33 E-value=75 Score=17.48 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=10.6
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2ep0_A 11 KPYKCDVCHKSFRYG 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeeCcccCcccCCh
Confidence 457788887777664
No 349
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=26.20 E-value=18 Score=28.76 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=28.8
Q ss_pred ccccCCcccCCCce----ecC---CchHhhHHHHHH------HHh----cCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPV----ILS---SGHTFDRASIQR------WLD----SGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv----~~~---cgh~~c~~ci~~------~~~----~~~~~CP~c~~~~~ 54 (372)
..||+|...+.+.- .+. |...|+..|..- -+. .....||.|+....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 46999999887652 343 666676667521 111 12579999986544
No 350
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.14 E-value=57 Score=17.81 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=10.9
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 9 k~~~C~~C~k~f~~~ 23 (44)
T 2emx_A 9 KPFGCSCCEKAFSSK 23 (44)
T ss_dssp CCEECSSSSCEESSH
T ss_pred cCccCCCCCcccCCH
Confidence 457888888777664
No 351
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.14 E-value=20 Score=24.42 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=20.8
Q ss_pred ccccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 9 FKCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
-.|.-|.+...+.++..-+..|+..|+ .|-.|+..+.
T Consensus 26 ~~C~~C~~~I~~~~~~a~~~~~H~~CF---------~C~~C~~~L~ 62 (89)
T 1x64_A 26 PLCDKCGSGIVGAVVKARDKYRHPECF---------VCADCNLNLK 62 (89)
T ss_dssp CBCTTTCCBCCSCCEESSSCEECTTTC---------CCSSSCCCTT
T ss_pred CCcccCCCEecccEEEECCceECccCC---------EecCCCCCCC
Confidence 456777766555554455555555554 2555555554
No 352
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.89 E-value=34 Score=23.22 Aligned_cols=23 Identities=13% Similarity=0.517 Sum_probs=11.0
Q ss_pred cccCCcccCCCceecCCchHhhH
Q 017402 10 KCPISLEIMSDPVILSSGHTFDR 32 (372)
Q Consensus 10 ~C~ic~~~~~~Pv~~~cgh~~c~ 32 (372)
.|+-|.+...+.++..-|..|+.
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~ 49 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHP 49 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECT
T ss_pred CCccCCCEecceEEEECCccccc
Confidence 35555555444444444444443
No 353
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=25.71 E-value=17 Score=21.75 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=25.6
Q ss_pred cccCCcccCC-Cceec--CCchHhhHHHHHHHHh---cCCCCCCCCCC
Q 017402 10 KCPISLEIMS-DPVIL--SSGHTFDRASIQRWLD---SGHRTCPITKL 51 (372)
Q Consensus 10 ~C~ic~~~~~-~Pv~~--~cgh~~c~~ci~~~~~---~~~~~CP~c~~ 51 (372)
.|.+|.+.-. +.++. .|...|+..|+..-+. .+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888886532 22222 3777788888854332 23457999964
No 354
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=25.67 E-value=18 Score=22.76 Aligned_cols=45 Identities=13% Similarity=0.323 Sum_probs=29.5
Q ss_pred CCCCccccCCcccCCCceec--CCchHhhHHHHHHHHh---cCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPVIL--SSGHTFDRASIQRWLD---SGHRTCPITKL 51 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~--~cgh~~c~~ci~~~~~---~~~~~CP~c~~ 51 (372)
...+..|.+|.+- .-++. .|...|+..|+..-+. .+...||.|..
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456789999873 33332 3777888889875432 24568999864
No 355
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=25.40 E-value=2.1e+02 Score=21.37 Aligned_cols=71 Identities=7% Similarity=0.068 Sum_probs=50.3
Q ss_pred hHHHHHHHHhcCChhHHHhHHHHHHHHhcCCHHHHHHHHhcChhHHHHHHhhcccHHHHHHHHHHHHHHhc
Q 017402 297 CVGVFVKMLKTGSSRAVQCSLFTLSCLCCCSQEICGDSRKEGVLDICMGLLEDDNEKVRRNANNLIQTLSG 367 (372)
Q Consensus 297 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 367 (372)
.+..+.+.+....+.-+-.++.++-.++++...--......++.+.+.+.....++..|.+..+++..=.+
T Consensus 44 Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 44 FVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 45555566666777778888888888887643222345556688888888877889999998888876543
No 356
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=25.33 E-value=70 Score=17.58 Aligned_cols=15 Identities=7% Similarity=0.124 Sum_probs=10.7
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em9_A 11 KPYNCKECGKSFRWA 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCccccccCCh
Confidence 457888888777664
No 357
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.22 E-value=45 Score=23.86 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=26.6
Q ss_pred CCccccCCcccCCC---ceecCCchHhhHHHHHHHHhc
Q 017402 7 DDFKCPISLEIMSD---PVILSSGHTFDRASIQRWLDS 41 (372)
Q Consensus 7 ~~~~C~ic~~~~~~---Pv~~~cgh~~c~~ci~~~~~~ 41 (372)
+=|.|..|...+.+ +....=|..||..|..+.+..
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 45889999998874 455556788999999887753
No 358
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.94 E-value=83 Score=17.28 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=10.8
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2enc_A 11 KPFKCEECGKGFYTN 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCcCCCCCCCcCCCh
Confidence 457888888777664
No 359
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=24.39 E-value=33 Score=22.37 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=28.9
Q ss_pred CCCCccccCCcccCCCceecC-----Cc-hHhhHHHHHHHHhc---CCCCCCCCCCCCC
Q 017402 5 FPDDFKCPISLEIMSDPVILS-----SG-HTFDRASIQRWLDS---GHRTCPITKLPLP 54 (372)
Q Consensus 5 ~~~~~~C~ic~~~~~~Pv~~~-----cg-h~~c~~ci~~~~~~---~~~~CP~c~~~~~ 54 (372)
..+...| +|.+..... .+. |. ..|+..|+. +.. +...||.|.....
T Consensus 13 ~~~~~~C-~C~~~~~g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TTSCCCS-TTCCCSCSS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCCEE-ECCCCCCCC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 4456778 899865444 333 44 467777875 222 4568999976543
No 360
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.20 E-value=78 Score=17.38 Aligned_cols=15 Identities=7% Similarity=-0.009 Sum_probs=10.5
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2en8_A 11 KSHTCDECGKNFCYI 25 (46)
T ss_dssp SSEECTTTCCEESSH
T ss_pred CCeECCCcCcccCCH
Confidence 457788887777664
No 361
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.15 E-value=28 Score=16.61 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=6.7
Q ss_pred ccccCCcccCCC
Q 017402 9 FKCPISLEIMSD 20 (372)
Q Consensus 9 ~~C~ic~~~~~~ 20 (372)
|.|++|...|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 456666555544
No 362
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=24.03 E-value=30 Score=18.06 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=9.3
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|+.|...|..+
T Consensus 10 k~~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRS 24 (37)
T ss_dssp SSBCCTTTCCCBSSH
T ss_pred CCccCCCCCcccCcH
Confidence 346777777666553
No 363
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.88 E-value=35 Score=16.14 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=4.7
Q ss_pred CCCCCCCCCC
Q 017402 45 TCPITKLPLP 54 (372)
Q Consensus 45 ~CP~c~~~~~ 54 (372)
.|+.|...+.
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 2m0e_A 4 KCPHCDKKFN 13 (29)
T ss_dssp CCSSCCCCCC
T ss_pred cCCCCCcccC
Confidence 3555544444
No 364
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=23.86 E-value=34 Score=21.46 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=27.0
Q ss_pred cccCCcccCCCceec---CCchHhhHHHHHHHHhcCCCCCCCC
Q 017402 10 KCPISLEIMSDPVIL---SSGHTFDRASIQRWLDSGHRTCPIT 49 (372)
Q Consensus 10 ~C~ic~~~~~~Pv~~---~cgh~~c~~ci~~~~~~~~~~CP~c 49 (372)
.|.-|...+.++-.. .|++.||..|=. +.-+.-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCC
Confidence 589999888765432 488899988842 333345679987
No 365
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.67 E-value=78 Score=17.45 Aligned_cols=15 Identities=13% Similarity=0.363 Sum_probs=10.3
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emf_A 11 KHFECTECGKAFTRK 25 (46)
T ss_dssp CCEECSSSCCEESCH
T ss_pred CCeECCCCCchhCCH
Confidence 357788887776654
No 366
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.65 E-value=85 Score=17.24 Aligned_cols=15 Identities=7% Similarity=0.144 Sum_probs=10.5
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytj_A 11 KPYICAECGKAFTIR 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCCCChhhCCH
Confidence 457788887777664
No 367
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.59 E-value=68 Score=17.69 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=10.7
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2en1_A 11 KPFKCEECGKRFTQN 25 (46)
T ss_dssp CSEEETTTTEEESSH
T ss_pred CCeeCCCCCcccCCH
Confidence 457888888777664
No 368
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=23.51 E-value=36 Score=21.90 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=9.1
Q ss_pred ccccCCcccCCCc
Q 017402 9 FKCPISLEIMSDP 21 (372)
Q Consensus 9 ~~C~ic~~~~~~P 21 (372)
|.|++|...|...
T Consensus 2 ~~C~~C~~~f~~~ 14 (82)
T 2kmk_A 2 FDCKICGKSFKRS 14 (82)
T ss_dssp EECSSSCCEESSH
T ss_pred ccCCCCcccccCc
Confidence 5688887777654
No 369
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.25 E-value=30 Score=16.20 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=6.9
Q ss_pred ccccCCcccCCC
Q 017402 9 FKCPISLEIMSD 20 (372)
Q Consensus 9 ~~C~ic~~~~~~ 20 (372)
+.|+.|...|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 456666655554
No 370
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.05 E-value=20 Score=23.65 Aligned_cols=28 Identities=4% Similarity=-0.172 Sum_probs=14.8
Q ss_pred CccccCCcccCCCceecCCchHhhHHHH
Q 017402 8 DFKCPISLEIMSDPVILSSGHTFDRASI 35 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~~~cgh~~c~~ci 35 (372)
.-.|+-|.+...+.++..-+..|+..|+
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF 42 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY 42 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC
Confidence 3456666665555444444544544444
No 371
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.99 E-value=86 Score=17.20 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=10.7
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2yso_A 11 KSHQCRECGEIFFQY 25 (46)
T ss_dssp CCEECTTTCCEESSH
T ss_pred CCEEccccChhhCCH
Confidence 357888888777664
No 372
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.80 E-value=74 Score=21.85 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=12.1
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|...
T Consensus 15 ~~~~C~~C~~~f~~~ 29 (107)
T 1wjp_A 15 EVYQCRLCNAKLSSL 29 (107)
T ss_dssp CCCBCTTTCCBCSSH
T ss_pred cCeECCCCCCccCCH
Confidence 458999999888765
No 373
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.76 E-value=39 Score=16.11 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=5.8
Q ss_pred ccccCCcccCCC
Q 017402 9 FKCPISLEIMSD 20 (372)
Q Consensus 9 ~~C~ic~~~~~~ 20 (372)
+.|+.|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 445555554443
No 374
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=22.68 E-value=2.2e+02 Score=25.47 Aligned_cols=15 Identities=7% Similarity=-0.157 Sum_probs=5.8
Q ss_pred ChhHHHhHHHHHHHH
Q 017402 309 SSRAVQCSLFTLSCL 323 (372)
Q Consensus 309 ~~~~~~~a~~~L~~l 323 (372)
+..++...+..|...
T Consensus 76 ~~~vRk~~a~FieEa 90 (386)
T 3o2t_A 76 SIEVRKFVIGFIEEA 90 (386)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 333333333333333
No 375
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.67 E-value=26 Score=16.63 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=7.0
Q ss_pred CccccCCcccCCC
Q 017402 8 DFKCPISLEIMSD 20 (372)
Q Consensus 8 ~~~C~ic~~~~~~ 20 (372)
.+.|+.|...|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 3556666555544
No 376
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.59 E-value=49 Score=22.10 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=11.8
Q ss_pred CCCccccCCcccCCCc
Q 017402 6 PDDFKCPISLEIMSDP 21 (372)
Q Consensus 6 ~~~~~C~ic~~~~~~P 21 (372)
...|.|++|...|...
T Consensus 6 ~~~~~C~~C~~~f~~~ 21 (96)
T 2dmd_A 6 SGPHKCEVCGKCFSRK 21 (96)
T ss_dssp CCCCCBTTTTBCCCCH
T ss_pred CcCeECCCCCCccCCH
Confidence 4568899998887653
No 377
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.46 E-value=74 Score=17.51 Aligned_cols=15 Identities=13% Similarity=0.270 Sum_probs=10.9
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2en6_A 11 KPYGCNECGKTFSQK 25 (46)
T ss_dssp CCEEETTTTEEESSH
T ss_pred cCeECCCCCcccCch
Confidence 457888888777664
No 378
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=22.42 E-value=41 Score=22.11 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=8.3
Q ss_pred Ccccc--CCcccCCCc
Q 017402 8 DFKCP--ISLEIMSDP 21 (372)
Q Consensus 8 ~~~C~--ic~~~~~~P 21 (372)
.|.|+ .|...|..+
T Consensus 4 ~~~C~~~~C~~~f~~~ 19 (90)
T 1a1h_A 4 PYACPVESCDRRFSQS 19 (90)
T ss_dssp CEECCSSSCCCEESSH
T ss_pred ceECCCCCCCCccCCH
Confidence 46676 476666543
No 379
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.04 E-value=30 Score=25.26 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCccccCCcccCC--CceecCCchHhhHHHHHHHHh
Q 017402 7 DDFKCPISLEIMS--DPVILSSGHTFDRASIQRWLD 40 (372)
Q Consensus 7 ~~~~C~ic~~~~~--~Pv~~~cgh~~c~~ci~~~~~ 40 (372)
+=|.|..|...+. +.....-|..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 3477888888773 345555677788888877764
No 380
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.99 E-value=29 Score=23.60 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=19.5
Q ss_pred CccccCCcccCC--CceecCCchHhhH
Q 017402 8 DFKCPISLEIMS--DPVILSSGHTFDR 32 (372)
Q Consensus 8 ~~~C~ic~~~~~--~Pv~~~cgh~~c~ 32 (372)
.-.|..|....- .|..-.||.+||.
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~ 51 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCA 51 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECT
T ss_pred CccchhhCCeecccCCeEcCCCCEecc
Confidence 357999997433 5888889999986
No 381
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.77 E-value=41 Score=16.19 Aligned_cols=12 Identities=8% Similarity=0.470 Sum_probs=6.3
Q ss_pred ccccCCcccCCC
Q 017402 9 FKCPISLEIMSD 20 (372)
Q Consensus 9 ~~C~ic~~~~~~ 20 (372)
|.|+.|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 455555555443
No 382
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.71 E-value=38 Score=17.39 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=9.6
Q ss_pred CCccccCCcccCCCc
Q 017402 7 DDFKCPISLEIMSDP 21 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P 21 (372)
..+.|++|...|..+
T Consensus 8 ~~~~C~~C~k~f~~~ 22 (36)
T 2elr_A 8 KTHLCDMCGKKFKSK 22 (36)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred CCeecCcCCCCcCch
Confidence 346777777766554
No 383
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.55 E-value=48 Score=21.69 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=15.5
Q ss_pred ccccCCcccCCC-ceecCCchHhhHHHHHHHH
Q 017402 9 FKCPISLEIMSD-PVILSSGHTFDRASIQRWL 39 (372)
Q Consensus 9 ~~C~ic~~~~~~-Pv~~~cgh~~c~~ci~~~~ 39 (372)
|.|..|...+.+ .....-|..||+.|..+.+
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f 73 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELHYHHRR 73 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHHHHHHc
Confidence 556666655543 2223344556666654433
No 384
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.31 E-value=32 Score=22.75 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=20.1
Q ss_pred cccCCcccCCCceecCCchHhhHHHHHHHHhcCCCCCCCCCCCCC
Q 017402 10 KCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLP 54 (372)
Q Consensus 10 ~C~ic~~~~~~Pv~~~cgh~~c~~ci~~~~~~~~~~CP~c~~~~~ 54 (372)
.|+-|.+...+.++..-|..|+..| +.|..|+.++.
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 2cor_A 17 ICQKCHAIIDEQPLIFKNDPYHPDH---------FNCANCGKELT 52 (79)
T ss_dssp BCTTTCCBCCSCCCCCSSSCCCTTT---------SBCSSSCCBCC
T ss_pred CCccCCCEecceEEEECcceeCCCC---------CEeCCCCCccC
Confidence 4666666555555545555555533 24666666555
No 385
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=21.04 E-value=21 Score=24.04 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=19.6
Q ss_pred ccccCCcccCCCc---ee-cCCchHhhHHHHHH
Q 017402 9 FKCPISLEIMSDP---VI-LSSGHTFDRASIQR 37 (372)
Q Consensus 9 ~~C~ic~~~~~~P---v~-~~cgh~~c~~ci~~ 37 (372)
-.|.+|...|.-- -- ..||..||..|-..
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4699999877521 11 36888898887643
No 386
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=21.03 E-value=21 Score=24.17 Aligned_cols=30 Identities=7% Similarity=-0.025 Sum_probs=20.1
Q ss_pred CccccCCcccCCCc---ee-cCCchHhhHHHHHH
Q 017402 8 DFKCPISLEIMSDP---VI-LSSGHTFDRASIQR 37 (372)
Q Consensus 8 ~~~C~ic~~~~~~P---v~-~~cgh~~c~~ci~~ 37 (372)
...|.+|...|.-- -- ..||+.||..|-..
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 35799999876522 11 36888898887643
No 387
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.88 E-value=29 Score=16.70 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=7.3
Q ss_pred CccccCCcccCCC
Q 017402 8 DFKCPISLEIMSD 20 (372)
Q Consensus 8 ~~~C~ic~~~~~~ 20 (372)
.+.|+.|...|..
T Consensus 3 ~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 3 PYQCDYCGRSFSD 15 (30)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCCCCcccCC
Confidence 3556666655554
No 388
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.67 E-value=51 Score=21.02 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=19.5
Q ss_pred CCccccCCccc-CCCceecCCchHhhH
Q 017402 7 DDFKCPISLEI-MSDPVILSSGHTFDR 32 (372)
Q Consensus 7 ~~~~C~ic~~~-~~~Pv~~~cgh~~c~ 32 (372)
..-.|..|... ---+..-.||.+||.
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~ 40 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCG 40 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECT
T ss_pred cCCcChhhCCccCccCEEeecCCEecc
Confidence 45789999985 334677789999985
No 389
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.67 E-value=95 Score=20.48 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=27.7
Q ss_pred CCccccCCcccCC--Cc-eec-CCchHhhHHHHHHH---Hh-cCCCCCCCCCCCCC
Q 017402 7 DDFKCPISLEIMS--DP-VIL-SSGHTFDRASIQRW---LD-SGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~ic~~~~~--~P-v~~-~cgh~~c~~ci~~~---~~-~~~~~CP~c~~~~~ 54 (372)
+...| +|..... .. |.- .|...|+..|+.-- .. ...+.||.|+....
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 34567 8988763 22 222 36666777776321 11 24578999987543
No 390
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=20.62 E-value=40 Score=26.76 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=26.9
Q ss_pred ccccCCcccC-----CCceecCCc----hHhhHHHHHHH-------------HhcCC-----CCCCCCCCCCC
Q 017402 9 FKCPISLEIM-----SDPVILSSG----HTFDRASIQRW-------------LDSGH-----RTCPITKLPLP 54 (372)
Q Consensus 9 ~~C~ic~~~~-----~~Pv~~~cg----h~~c~~ci~~~-------------~~~~~-----~~CP~c~~~~~ 54 (372)
-.|+.|.++- ..--+-+-| +++|+.|-... +.... ..||.|+.+..
T Consensus 76 K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~ 148 (200)
T 3gox_A 76 KICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSI 148 (200)
T ss_dssp EECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEE
T ss_pred eECCCCCCCcchhhhcccccCCCCCcccCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCC
Confidence 4699999842 111122234 68899995421 11233 56999987655
No 391
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.60 E-value=34 Score=27.22 Aligned_cols=34 Identities=9% Similarity=0.223 Sum_probs=25.4
Q ss_pred CCccccCCcccCCCc-eecCCchHhhHHHHHHHHh
Q 017402 7 DDFKCPISLEIMSDP-VILSSGHTFDRASIQRWLD 40 (372)
Q Consensus 7 ~~~~C~ic~~~~~~P-v~~~cgh~~c~~ci~~~~~ 40 (372)
+=|.|..|...+.+. ....=|..||..|..+.+.
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 458899998887654 3444677899999988774
No 392
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.19 E-value=32 Score=16.43 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=7.4
Q ss_pred ccccCCcccCCCc
Q 017402 9 FKCPISLEIMSDP 21 (372)
Q Consensus 9 ~~C~ic~~~~~~P 21 (372)
+.|+.|...|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 5566666655443
No 393
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=20.18 E-value=50 Score=24.50 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=27.0
Q ss_pred CccccCCcccCCCcee--cCCchHhhHHHHHHHH----------hcCCCCCCCCC
Q 017402 8 DFKCPISLEIMSDPVI--LSSGHTFDRASIQRWL----------DSGHRTCPITK 50 (372)
Q Consensus 8 ~~~C~ic~~~~~~Pv~--~~cgh~~c~~ci~~~~----------~~~~~~CP~c~ 50 (372)
+..|.+|.+=-. +. =.|-..||..|+.+-+ ..+...|+.|+
T Consensus 57 ~~~C~vC~dGG~--LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 57 DEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp BSSCTTTCCCSE--EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCcCeecCCCCe--eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 345888875311 11 1477899999998752 13457899994
No 394
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=20.09 E-value=51 Score=20.68 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCcccc--CCcccCCCceecCCchHhhHHHHHHHH----hcCCCCCCCCCCCCC
Q 017402 7 DDFKCP--ISLEIMSDPVILSSGHTFDRASIQRWL----DSGHRTCPITKLPLP 54 (372)
Q Consensus 7 ~~~~C~--ic~~~~~~Pv~~~cgh~~c~~ci~~~~----~~~~~~CP~c~~~~~ 54 (372)
..|.|+ .|...|.... -+.+.. ....+.|+.|+..+.
T Consensus 18 ~~~~C~~~~C~k~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 18 RPYACPVESCDRRFSRSD-----------ELTRHIRIHTGQKPFQCRICMRNFS 60 (73)
T ss_dssp CCEECSSTTBCCEESSHH-----------HHHHHHHHHHCCCCEECTTTCCEES
T ss_pred CccCCcCCCCCCccCCHH-----------HHHHHHHhhCCCCCeECCCCCchhC
Confidence 457787 4877666531 122222 223568999988776
No 395
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.09 E-value=32 Score=16.32 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=6.9
Q ss_pred CccccCCcccCCC
Q 017402 8 DFKCPISLEIMSD 20 (372)
Q Consensus 8 ~~~C~ic~~~~~~ 20 (372)
.+.|+.|...|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 3556666555443
No 396
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.01 E-value=39 Score=22.97 Aligned_cols=29 Identities=14% Similarity=0.301 Sum_probs=13.0
Q ss_pred ccccCCcccCCC-ceecCCchHhhHHHHHH
Q 017402 9 FKCPISLEIMSD-PVILSSGHTFDRASIQR 37 (372)
Q Consensus 9 ~~C~ic~~~~~~-Pv~~~cgh~~c~~ci~~ 37 (372)
|.|..|...+.+ +....=|..||..|..+
T Consensus 43 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 72 (91)
T 2d8y_A 43 FRCSYCNNKLSLGTYASLHGRIYCKPHFNQ 72 (91)
T ss_dssp CBCTTTCCBCCTTTCCCSSSCCCCHHHHHH
T ss_pred CeeCCCCCCCCCCCcEeECCEEECHHHHHH
Confidence 445555544443 12223344555555544
Done!