Query 017404
Match_columns 372
No_of_seqs 274 out of 2416
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:16:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03520 GldE gliding motilit 100.0 9.5E-51 2.1E-55 409.5 30.2 243 2-252 39-296 (408)
2 PRK11573 hypothetical protein; 100.0 1E-50 2.2E-55 409.5 29.7 244 2-253 36-297 (413)
3 COG4536 CorB Putative Mg2+ and 100.0 2.7E-49 5.8E-54 381.3 18.3 246 2-252 47-309 (423)
4 COG1253 TlyC Hemolysins and re 100.0 7.2E-46 1.6E-50 376.4 28.9 243 3-252 49-313 (429)
5 PRK15094 magnesium/cobalt effl 100.0 4.9E-28 1.1E-32 234.4 18.7 151 91-250 20-172 (292)
6 COG4535 CorC Putative Mg2+ and 99.9 1.1E-27 2.3E-32 219.2 11.9 155 90-253 19-175 (293)
7 KOG2118 Predicted membrane pro 99.9 4.9E-26 1.1E-30 233.9 2.3 244 3-248 63-311 (498)
8 COG3448 CBS-domain-containing 99.8 2.8E-19 6.1E-24 168.7 21.5 225 16-248 83-353 (382)
9 PF01595 DUF21: Domain of unkn 99.8 5.2E-19 1.1E-23 158.9 12.8 127 2-132 44-183 (183)
10 TIGR00400 mgtE Mg2+ transporte 99.7 1.9E-16 4E-21 162.2 16.1 134 105-248 89-233 (449)
11 COG2524 Predicted transcriptio 99.7 1.2E-16 2.6E-21 148.6 9.8 108 136-248 163-272 (294)
12 TIGR01302 IMP_dehydrog inosine 99.7 2E-15 4.4E-20 154.6 15.9 132 104-248 43-182 (450)
13 COG4109 Predicted transcriptio 99.6 6.5E-15 1.4E-19 142.2 11.8 112 133-248 171-287 (432)
14 PRK05567 inosine 5'-monophosph 99.5 2.3E-13 4.9E-18 140.8 16.8 131 104-248 50-186 (486)
15 cd04603 CBS_pair_KefB_assoc Th 99.5 2.1E-13 4.5E-18 112.0 12.7 91 156-248 2-94 (111)
16 PRK10892 D-arabinose 5-phospha 99.5 1.3E-13 2.8E-18 135.3 11.8 104 143-248 200-307 (326)
17 cd04618 CBS_pair_5 The CBS dom 99.5 3.5E-13 7.5E-18 109.3 11.9 79 156-248 2-80 (98)
18 cd04641 CBS_pair_28 The CBS do 99.5 6.4E-13 1.4E-17 110.3 12.3 91 156-248 2-103 (120)
19 cd04630 CBS_pair_17 The CBS do 99.5 6.6E-13 1.4E-17 109.1 12.2 92 156-248 2-98 (114)
20 cd04605 CBS_pair_MET2_assoc Th 99.5 7.6E-13 1.7E-17 107.5 11.9 91 156-248 3-93 (110)
21 COG3620 Predicted transcriptio 99.5 2.8E-13 6E-18 118.0 9.5 118 124-248 39-166 (187)
22 cd04619 CBS_pair_6 The CBS dom 99.5 8.8E-13 1.9E-17 108.6 11.9 91 156-248 2-97 (114)
23 PRK11543 gutQ D-arabinose 5-ph 99.4 3.9E-13 8.5E-18 131.5 10.9 103 144-248 196-301 (321)
24 cd04623 CBS_pair_10 The CBS do 99.4 1.2E-12 2.7E-17 106.3 12.0 91 156-248 2-97 (113)
25 cd04626 CBS_pair_13 The CBS do 99.4 9.2E-13 2E-17 107.4 11.1 91 156-248 2-95 (111)
26 cd04600 CBS_pair_HPP_assoc Thi 99.4 1E-12 2.2E-17 109.1 11.6 91 156-248 3-107 (124)
27 cd04590 CBS_pair_CorC_HlyC_ass 99.4 1E-12 2.2E-17 107.0 11.0 91 156-248 2-94 (111)
28 cd04596 CBS_pair_DRTGG_assoc T 99.4 1.5E-12 3.3E-17 105.9 11.5 89 156-248 3-91 (108)
29 cd04642 CBS_pair_29 The CBS do 99.4 1.8E-12 3.9E-17 108.6 12.2 91 156-248 2-109 (126)
30 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.5E-12 3.2E-17 107.0 11.3 90 157-248 3-96 (115)
31 cd04631 CBS_pair_18 The CBS do 99.4 1.4E-12 3E-17 108.4 11.2 92 156-248 2-108 (125)
32 cd04627 CBS_pair_14 The CBS do 99.4 1.4E-12 3.1E-17 108.6 10.8 92 156-248 2-106 (123)
33 COG2239 MgtE Mg/Co/Ni transpor 99.4 2.7E-12 5.8E-17 130.7 14.3 116 127-248 114-234 (451)
34 cd04643 CBS_pair_30 The CBS do 99.4 2.4E-12 5.1E-17 105.4 11.0 89 156-248 2-99 (116)
35 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 3.3E-12 7.2E-17 103.6 11.6 90 156-248 2-94 (111)
36 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 3.8E-12 8.2E-17 103.2 11.8 90 156-248 2-94 (111)
37 PRK07807 inosine 5-monophospha 99.4 2.2E-12 4.8E-17 132.8 12.9 100 143-248 87-186 (479)
38 cd04803 CBS_pair_15 The CBS do 99.4 3.4E-12 7.4E-17 105.6 11.6 91 156-248 2-105 (122)
39 cd04621 CBS_pair_8 The CBS dom 99.4 3.3E-12 7.1E-17 109.3 11.4 91 156-248 2-119 (135)
40 cd04624 CBS_pair_11 The CBS do 99.4 3.9E-12 8.4E-17 103.7 11.2 91 156-248 2-95 (112)
41 cd04639 CBS_pair_26 The CBS do 99.4 3.3E-12 7.2E-17 103.9 10.8 91 156-248 2-94 (111)
42 cd04640 CBS_pair_27 The CBS do 99.4 2.8E-12 6E-17 107.7 10.6 91 156-248 2-108 (126)
43 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 4E-12 8.7E-17 103.4 11.1 91 156-248 2-96 (114)
44 cd04617 CBS_pair_4 The CBS dom 99.4 3.3E-12 7.2E-17 105.8 10.8 91 156-248 2-98 (118)
45 cd04588 CBS_pair_CAP-ED_DUF294 99.4 4.8E-12 1E-16 102.8 11.6 90 156-248 2-93 (110)
46 cd04801 CBS_pair_M50_like This 99.4 2.3E-12 5.1E-17 105.6 9.6 91 156-248 2-97 (114)
47 cd04589 CBS_pair_CAP-ED_DUF294 99.4 5.4E-12 1.2E-16 102.8 11.6 90 156-248 2-95 (111)
48 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 7.3E-12 1.6E-16 101.0 12.2 88 156-248 2-89 (106)
49 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 6.7E-12 1.4E-16 101.4 11.6 90 156-248 3-92 (109)
50 PRK01862 putative voltage-gate 99.4 3E-12 6.4E-17 135.1 12.2 103 142-248 444-550 (574)
51 cd04599 CBS_pair_GGDEF_assoc2 99.4 6.2E-12 1.3E-16 101.1 11.3 88 156-248 2-89 (105)
52 cd04607 CBS_pair_NTP_transfera 99.4 6.9E-12 1.5E-16 102.7 11.7 90 157-248 4-96 (113)
53 cd04595 CBS_pair_DHH_polyA_Pol 99.4 6.7E-12 1.5E-16 102.1 11.5 90 156-248 3-94 (110)
54 cd04635 CBS_pair_22 The CBS do 99.4 5.1E-12 1.1E-16 104.5 10.8 91 156-248 2-105 (122)
55 cd04800 CBS_pair_CAP-ED_DUF294 99.4 7.4E-12 1.6E-16 101.8 11.6 90 156-248 2-95 (111)
56 cd04610 CBS_pair_ParBc_assoc T 99.4 9.1E-12 2E-16 100.5 12.0 88 156-248 3-90 (107)
57 cd04594 CBS_pair_EriC_assoc_ar 99.4 1E-11 2.2E-16 100.6 12.2 84 159-248 5-88 (104)
58 cd04636 CBS_pair_23 The CBS do 99.4 6.4E-12 1.4E-16 106.1 11.4 91 156-248 2-116 (132)
59 cd04601 CBS_pair_IMPDH This cd 99.4 7.3E-12 1.6E-16 101.4 11.3 90 156-248 3-93 (110)
60 cd04629 CBS_pair_16 The CBS do 99.4 4.7E-12 1E-16 103.3 9.8 91 156-248 2-98 (114)
61 cd04585 CBS_pair_ACT_assoc2 Th 99.4 8.3E-12 1.8E-16 102.6 11.3 90 156-248 2-105 (122)
62 cd04586 CBS_pair_BON_assoc Thi 99.4 4.7E-12 1E-16 107.4 10.1 91 156-248 3-119 (135)
63 cd04614 CBS_pair_1 The CBS dom 99.3 1.1E-11 2.3E-16 99.8 11.4 78 156-248 2-79 (96)
64 PLN02274 inosine-5'-monophosph 99.3 1.3E-11 2.8E-16 128.0 14.8 109 131-248 91-203 (505)
65 cd04608 CBS_pair_PALP_assoc Th 99.3 3E-12 6.6E-17 107.8 8.3 89 156-248 3-95 (124)
66 cd04602 CBS_pair_IMPDH_2 This 99.3 1E-11 2.2E-16 102.1 11.2 91 156-248 3-97 (114)
67 cd04632 CBS_pair_19 The CBS do 99.3 9.7E-12 2.1E-16 104.2 11.2 91 156-248 2-109 (128)
68 cd04591 CBS_pair_EriC_assoc_eu 99.3 8.5E-12 1.8E-16 102.0 10.5 85 156-248 3-89 (105)
69 cd04615 CBS_pair_2 The CBS dom 99.3 1.3E-11 2.8E-16 100.8 11.4 90 157-248 3-96 (113)
70 cd04587 CBS_pair_CAP-ED_DUF294 99.3 1E-11 2.2E-16 101.2 10.7 90 156-248 2-96 (113)
71 cd04606 CBS_pair_Mg_transporte 99.3 9.6E-12 2.1E-16 101.3 10.5 85 160-248 2-91 (109)
72 cd04620 CBS_pair_7 The CBS dom 99.3 1.1E-11 2.5E-16 101.5 10.9 90 156-248 2-98 (115)
73 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 1.3E-11 2.8E-16 100.6 10.5 91 156-248 3-97 (114)
74 cd04802 CBS_pair_3 The CBS dom 99.3 2.2E-11 4.7E-16 99.2 11.8 90 156-248 2-96 (112)
75 PRK07107 inosine 5-monophospha 99.3 8.9E-12 1.9E-16 129.1 11.7 111 130-248 87-201 (502)
76 cd04637 CBS_pair_24 The CBS do 99.3 9.9E-12 2.1E-16 103.0 9.8 90 156-248 2-105 (122)
77 cd04622 CBS_pair_9 The CBS dom 99.3 3.2E-11 7E-16 98.2 12.1 90 156-248 2-96 (113)
78 cd04638 CBS_pair_25 The CBS do 99.3 4E-11 8.7E-16 97.0 12.4 89 156-248 2-90 (106)
79 cd04584 CBS_pair_ACT_assoc Thi 99.3 2.1E-11 4.5E-16 100.5 10.7 91 156-248 2-105 (121)
80 cd04633 CBS_pair_20 The CBS do 99.3 1.9E-11 4.1E-16 101.0 10.4 90 156-248 2-105 (121)
81 TIGR01137 cysta_beta cystathio 99.3 1.9E-11 4.2E-16 125.1 12.3 105 136-248 328-436 (454)
82 PTZ00314 inosine-5'-monophosph 99.3 2.7E-11 5.9E-16 125.4 13.4 136 105-249 60-200 (495)
83 cd04609 CBS_pair_PALP_assoc2 T 99.3 3.5E-11 7.6E-16 97.2 11.0 88 156-248 2-93 (110)
84 cd04625 CBS_pair_12 The CBS do 99.3 3.9E-11 8.4E-16 97.7 11.2 90 156-248 2-96 (112)
85 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 3.4E-11 7.4E-16 123.9 12.9 99 143-248 86-184 (475)
86 cd04598 CBS_pair_GGDEF_assoc T 99.3 3.7E-11 8.1E-16 98.9 9.9 90 156-248 2-102 (119)
87 cd02205 CBS_pair The CBS domai 99.2 1.1E-10 2.3E-15 93.4 11.3 91 156-248 2-96 (113)
88 cd04634 CBS_pair_21 The CBS do 99.2 7.9E-11 1.7E-15 101.4 11.1 90 156-248 2-127 (143)
89 COG0517 FOG: CBS domain [Gener 99.2 1.4E-10 3E-15 94.8 11.7 95 149-248 3-101 (117)
90 TIGR00393 kpsF KpsF/GutQ famil 99.2 6.1E-11 1.3E-15 112.8 10.3 101 145-248 155-258 (268)
91 COG2905 Predicted signal-trans 99.1 2E-10 4.4E-15 117.3 9.0 106 139-248 143-252 (610)
92 cd04592 CBS_pair_EriC_assoc_eu 99.0 1.1E-09 2.4E-14 94.0 8.8 96 156-253 2-121 (133)
93 PRK14869 putative manganese-de 99.0 2.4E-09 5.2E-14 112.4 10.2 56 144-203 67-122 (546)
94 PF00571 CBS: CBS domain CBS d 98.8 2.1E-08 4.6E-13 72.6 6.4 37 212-248 1-37 (57)
95 PF00571 CBS: CBS domain CBS d 98.6 6.2E-08 1.4E-12 70.1 5.3 54 147-204 1-54 (57)
96 KOG1764 5'-AMP-activated prote 98.5 1E-06 2.2E-11 88.7 11.4 91 156-248 238-340 (381)
97 PRK10070 glycine betaine trans 98.5 1.8E-06 3.9E-11 87.6 12.9 100 145-248 274-374 (400)
98 KOG2550 IMP dehydrogenase/GMP 98.4 1.1E-06 2.5E-11 87.1 8.0 135 105-249 72-210 (503)
99 TIGR01186 proV glycine betaine 98.3 8.1E-06 1.8E-10 81.8 12.8 86 159-248 254-339 (363)
100 KOG0474 Cl- channel CLC-7 and 98.2 2.7E-06 5.9E-11 88.3 6.5 104 142-248 579-728 (762)
101 PRK07107 inosine 5-monophospha 98.0 4.6E-05 1E-09 79.4 10.7 100 142-246 158-260 (502)
102 TIGR00400 mgtE Mg2+ transporte 97.9 6.9E-06 1.5E-10 84.5 3.1 99 143-247 193-291 (449)
103 cd04603 CBS_pair_KefB_assoc Th 97.9 2.5E-05 5.4E-10 63.7 5.7 56 144-203 55-110 (111)
104 COG2524 Predicted transcriptio 97.9 2.2E-05 4.8E-10 74.0 5.9 40 209-248 171-210 (294)
105 TIGR01303 IMP_DH_rel_1 IMP deh 97.8 0.00011 2.4E-09 76.1 10.5 98 144-248 145-244 (475)
106 cd04617 CBS_pair_4 The CBS dom 97.8 4.3E-05 9.3E-10 62.9 5.7 60 143-203 56-117 (118)
107 cd04597 CBS_pair_DRTGG_assoc2 97.8 6.8E-05 1.5E-09 62.0 6.4 55 145-203 58-112 (113)
108 cd04604 CBS_pair_KpsF_GutQ_ass 97.7 7.5E-05 1.6E-09 60.3 6.3 59 141-203 55-113 (114)
109 COG3448 CBS-domain-containing 97.7 2.4E-05 5.3E-10 75.0 3.2 40 209-248 244-283 (382)
110 cd04801 CBS_pair_M50_like This 97.7 6.2E-05 1.4E-09 61.2 5.2 58 144-203 56-113 (114)
111 cd04597 CBS_pair_DRTGG_assoc2 97.7 8E-05 1.7E-09 61.6 5.9 39 210-248 58-96 (113)
112 cd04619 CBS_pair_6 The CBS dom 97.7 8.2E-05 1.8E-09 60.8 5.6 57 143-203 57-113 (114)
113 PRK14869 putative manganese-de 97.6 8.9E-05 1.9E-09 78.0 6.5 103 143-248 244-375 (546)
114 cd04618 CBS_pair_5 The CBS dom 97.6 0.00012 2.6E-09 58.9 5.9 46 157-203 52-97 (98)
115 cd04640 CBS_pair_27 The CBS do 97.6 9.7E-05 2.1E-09 61.6 4.6 60 143-203 62-125 (126)
116 cd04607 CBS_pair_NTP_transfera 97.5 0.00019 4.2E-09 58.2 5.7 56 144-203 57-112 (113)
117 PRK07807 inosine 5-monophospha 97.5 0.0003 6.4E-09 73.1 8.3 95 145-248 148-246 (479)
118 cd04585 CBS_pair_ACT_assoc2 Th 97.5 0.00021 4.5E-09 58.2 5.6 58 142-203 64-121 (122)
119 cd04623 CBS_pair_10 The CBS do 97.5 0.00024 5.2E-09 57.1 5.8 55 144-203 58-112 (113)
120 cd04600 CBS_pair_HPP_assoc Thi 97.4 0.00025 5.4E-09 58.3 5.6 58 142-203 66-123 (124)
121 cd04630 CBS_pair_17 The CBS do 97.4 0.00029 6.4E-09 57.3 5.7 56 143-203 58-113 (114)
122 cd04627 CBS_pair_14 The CBS do 97.4 0.00033 7.2E-09 57.9 6.0 52 147-202 70-121 (123)
123 cd04620 CBS_pair_7 The CBS dom 97.4 0.00037 8E-09 56.6 6.0 57 143-203 56-114 (115)
124 cd04610 CBS_pair_ParBc_assoc T 97.4 0.00034 7.5E-09 55.8 5.7 56 144-203 51-106 (107)
125 COG0517 FOG: CBS domain [Gener 97.4 0.00062 1.4E-08 55.1 7.3 54 146-202 63-117 (117)
126 cd04625 CBS_pair_12 The CBS do 97.4 0.00033 7.1E-09 56.5 5.5 55 144-203 57-111 (112)
127 cd04582 CBS_pair_ABC_OpuCA_ass 97.4 0.00051 1.1E-08 54.8 6.5 54 146-203 52-105 (106)
128 cd04596 CBS_pair_DRTGG_assoc T 97.4 0.00037 8E-09 56.1 5.6 57 143-203 51-107 (108)
129 cd04621 CBS_pair_8 The CBS dom 97.4 0.00037 7.9E-09 59.3 5.9 56 143-203 79-134 (135)
130 KOG1764 5'-AMP-activated prote 97.4 0.00075 1.6E-08 68.2 9.0 119 130-249 135-268 (381)
131 cd04615 CBS_pair_2 The CBS dom 97.3 0.00043 9.3E-09 55.9 5.8 57 143-203 56-112 (113)
132 cd04613 CBS_pair_SpoIVFB_EriC_ 97.3 0.0004 8.7E-09 55.9 5.6 57 144-203 57-113 (114)
133 cd04633 CBS_pair_20 The CBS do 97.3 0.00032 6.9E-09 57.4 5.0 57 142-203 64-120 (121)
134 cd04593 CBS_pair_EriC_assoc_ba 97.3 0.00046 9.9E-09 56.1 5.9 56 145-203 58-114 (115)
135 cd04626 CBS_pair_13 The CBS do 97.3 0.00047 1E-08 55.6 5.9 55 144-203 56-110 (111)
136 TIGR03520 GldE gliding motilit 97.3 0.039 8.4E-07 56.3 21.1 90 144-238 254-350 (408)
137 cd04636 CBS_pair_23 The CBS do 97.3 0.00041 8.9E-09 58.2 5.6 56 143-203 76-131 (132)
138 smart00116 CBS Domain in cysta 97.3 0.0007 1.5E-08 45.2 5.7 30 219-248 1-30 (49)
139 cd04589 CBS_pair_CAP-ED_DUF294 97.3 0.00048 1E-08 55.5 5.7 56 143-203 55-110 (111)
140 KOG0475 Cl- channel CLC-3 and 97.3 0.0016 3.5E-08 68.2 10.6 101 147-248 545-677 (696)
141 PLN02274 inosine-5'-monophosph 97.3 0.0015 3.3E-08 68.3 10.6 102 143-248 161-267 (505)
142 COG3620 Predicted transcriptio 97.3 0.00033 7.2E-09 61.8 4.7 38 211-248 66-103 (187)
143 cd04587 CBS_pair_CAP-ED_DUF294 97.3 0.00049 1.1E-08 55.5 5.3 55 145-203 58-112 (113)
144 cd04599 CBS_pair_GGDEF_assoc2 97.3 0.00052 1.1E-08 54.6 5.4 55 144-203 50-104 (105)
145 cd04631 CBS_pair_18 The CBS do 97.3 0.00049 1.1E-08 56.6 5.4 57 143-203 68-124 (125)
146 cd04629 CBS_pair_16 The CBS do 97.3 0.00047 1E-08 55.7 5.2 55 144-203 59-113 (114)
147 PTZ00314 inosine-5'-monophosph 97.3 0.0013 2.8E-08 68.6 9.7 101 143-246 157-259 (495)
148 cd04622 CBS_pair_9 The CBS dom 97.3 0.0006 1.3E-08 55.0 5.8 55 145-203 58-112 (113)
149 cd04584 CBS_pair_ACT_assoc Thi 97.3 0.00052 1.1E-08 56.0 5.4 57 142-203 64-120 (121)
150 PRK10892 D-arabinose 5-phospha 97.3 0.00043 9.3E-09 68.0 5.8 58 142-204 266-323 (326)
151 cd04595 CBS_pair_DHH_polyA_Pol 97.2 0.00059 1.3E-08 54.9 5.6 56 143-203 54-109 (110)
152 cd04641 CBS_pair_28 The CBS do 97.2 0.001 2.2E-08 54.6 7.1 31 218-248 1-31 (120)
153 PRK05567 inosine 5'-monophosph 97.2 0.0014 3.1E-08 68.2 9.6 99 144-248 146-247 (486)
154 cd04803 CBS_pair_15 The CBS do 97.2 0.00068 1.5E-08 55.5 5.8 57 143-203 65-121 (122)
155 cd04601 CBS_pair_IMPDH This cd 97.2 0.00077 1.7E-08 53.9 6.0 56 144-203 53-109 (110)
156 cd04586 CBS_pair_BON_assoc Thi 97.2 0.00049 1.1E-08 57.9 5.0 57 142-203 78-134 (135)
157 cd04592 CBS_pair_EriC_assoc_eu 97.2 0.0012 2.5E-08 56.5 7.3 30 219-248 2-31 (133)
158 cd04800 CBS_pair_CAP-ED_DUF294 97.2 0.00064 1.4E-08 54.7 5.4 55 144-203 56-110 (111)
159 cd04802 CBS_pair_3 The CBS dom 97.2 0.00073 1.6E-08 54.5 5.7 56 143-203 56-111 (112)
160 cd04583 CBS_pair_ABC_OpuCA_ass 97.2 0.00077 1.7E-08 53.8 5.8 55 145-203 54-108 (109)
161 PRK11543 gutQ D-arabinose 5-ph 97.2 0.00072 1.6E-08 66.1 6.7 58 143-204 261-318 (321)
162 cd04594 CBS_pair_EriC_assoc_ar 97.2 0.00089 1.9E-08 53.7 6.1 54 145-203 50-103 (104)
163 cd04611 CBS_pair_PAS_GGDEF_DUF 97.2 0.00081 1.8E-08 53.9 5.9 57 143-203 54-110 (111)
164 cd04612 CBS_pair_SpoIVFB_EriC_ 97.2 0.00091 2E-08 53.6 6.1 55 145-203 56-110 (111)
165 cd04602 CBS_pair_IMPDH_2 This 97.2 0.0007 1.5E-08 55.1 5.3 58 144-203 56-113 (114)
166 cd04606 CBS_pair_Mg_transporte 97.2 0.00082 1.8E-08 54.2 5.7 57 144-204 52-108 (109)
167 cd04614 CBS_pair_1 The CBS dom 97.2 0.0012 2.6E-08 52.7 6.5 31 218-248 1-31 (96)
168 cd04635 CBS_pair_22 The CBS do 97.2 0.00074 1.6E-08 55.3 5.4 57 143-203 65-121 (122)
169 cd04639 CBS_pair_26 The CBS do 97.2 0.00075 1.6E-08 54.3 5.2 55 145-203 56-110 (111)
170 cd04643 CBS_pair_30 The CBS do 97.1 0.00067 1.4E-08 55.0 4.7 55 143-203 61-115 (116)
171 smart00116 CBS Domain in cysta 97.1 0.0012 2.7E-08 44.0 5.3 46 157-204 2-47 (49)
172 cd04632 CBS_pair_19 The CBS do 97.1 0.00095 2.1E-08 55.4 5.3 58 143-203 69-127 (128)
173 cd04608 CBS_pair_PALP_assoc Th 97.1 0.0027 5.9E-08 53.1 7.9 31 218-248 2-32 (124)
174 cd04605 CBS_pair_MET2_assoc Th 97.0 0.002 4.4E-08 51.6 6.9 54 146-203 56-109 (110)
175 cd04637 CBS_pair_24 The CBS do 97.0 0.001 2.2E-08 54.6 5.1 55 145-203 67-121 (122)
176 cd04642 CBS_pair_29 The CBS do 97.0 0.0015 3.3E-08 54.2 6.1 51 149-203 75-125 (126)
177 TIGR01137 cysta_beta cystathio 97.0 0.0019 4.1E-08 66.3 7.4 40 209-248 334-373 (454)
178 cd04590 CBS_pair_CorC_HlyC_ass 96.9 0.0016 3.5E-08 52.3 5.3 53 146-203 58-110 (111)
179 cd04588 CBS_pair_CAP-ED_DUF294 96.9 0.002 4.3E-08 51.7 5.7 55 145-203 55-109 (110)
180 cd04624 CBS_pair_11 The CBS do 96.9 0.0024 5.2E-08 51.4 5.7 56 144-203 56-111 (112)
181 cd04634 CBS_pair_21 The CBS do 96.8 0.0022 4.8E-08 54.8 5.4 56 143-203 87-142 (143)
182 TIGR00393 kpsF KpsF/GutQ famil 96.8 0.0026 5.6E-08 60.4 6.3 39 210-248 155-194 (268)
183 cd04591 CBS_pair_EriC_assoc_eu 96.8 0.0029 6.2E-08 51.2 5.6 49 150-203 56-104 (105)
184 PRK01862 putative voltage-gate 96.8 0.0027 5.9E-08 67.3 6.9 59 144-205 511-570 (574)
185 TIGR03415 ABC_choXWV_ATP choli 96.7 0.0062 1.4E-07 61.6 8.3 91 142-248 271-362 (382)
186 COG2905 Predicted signal-trans 96.7 0.0038 8.2E-08 64.9 6.7 70 132-206 198-270 (610)
187 cd04598 CBS_pair_GGDEF_assoc T 96.6 0.0037 8E-08 50.8 5.1 57 143-203 59-118 (119)
188 COG4175 ProV ABC-type proline/ 96.5 0.0063 1.4E-07 59.7 7.0 102 133-248 262-364 (386)
189 PRK15094 magnesium/cobalt effl 96.5 0.0057 1.2E-07 59.6 6.8 87 145-237 133-228 (292)
190 cd04638 CBS_pair_25 The CBS do 96.5 0.0054 1.2E-07 49.0 5.4 53 146-203 53-105 (106)
191 cd02205 CBS_pair The CBS domai 96.3 0.013 2.8E-07 46.0 6.7 53 147-203 60-112 (113)
192 cd04609 CBS_pair_PALP_assoc2 T 96.3 0.013 2.8E-07 46.6 6.7 30 219-248 2-31 (110)
193 TIGR01302 IMP_dehydrog inosine 96.3 0.0063 1.4E-07 62.8 5.7 60 143-205 141-200 (450)
194 COG2239 MgtE Mg/Co/Ni transpor 95.4 0.018 4E-07 59.3 4.6 60 141-204 192-251 (451)
195 COG4109 Predicted transcriptio 94.8 0.042 9.1E-07 54.4 5.0 59 142-204 246-304 (432)
196 TIGR01186 proV glycine betaine 93.4 0.19 4E-06 50.6 6.5 56 145-205 302-357 (363)
197 KOG2550 IMP dehydrogenase/GMP 93.3 0.31 6.7E-06 49.3 7.8 101 141-248 167-270 (503)
198 PRK11573 hypothetical protein; 93.1 0.38 8.2E-06 49.2 8.5 79 156-237 263-350 (413)
199 PRK10070 glycine betaine trans 90.7 0.57 1.2E-05 47.8 6.4 57 144-205 336-392 (400)
200 COG1253 TlyC Hemolysins and re 88.3 1.4 3E-05 45.3 7.2 41 208-248 204-246 (429)
201 COG4536 CorB Putative Mg2+ and 84.9 3.6 7.9E-05 41.4 7.7 94 141-236 261-361 (423)
202 COG1125 OpuBA ABC-type proline 82.0 4.4 9.5E-05 39.2 6.7 82 157-248 189-291 (309)
203 PF04982 HPP: HPP family; Int 73.2 30 0.00064 29.2 8.7 56 9-64 23-78 (120)
204 TIGR03415 ABC_choXWV_ATP choli 67.5 6.7 0.00015 39.8 4.2 46 156-205 334-379 (382)
205 KOG0474 Cl- channel CLC-7 and 64.6 8.7 0.00019 41.2 4.4 53 148-204 693-745 (762)
206 KOG0476 Cl- channel CLC-2 and 54.7 12 0.00025 41.1 3.3 59 143-204 586-645 (931)
207 COG4535 CorC Putative Mg2+ and 53.6 41 0.00088 32.2 6.3 87 146-238 134-229 (293)
208 KOG0476 Cl- channel CLC-2 and 49.2 23 0.00049 39.0 4.4 40 209-248 587-626 (931)
209 PF03563 Bunya_G2: Bunyavirus 43.3 64 0.0014 31.1 6.0 40 45-98 195-234 (285)
210 COG1125 OpuBA ABC-type proline 42.1 41 0.00089 32.7 4.6 59 143-203 247-307 (309)
211 KOG0475 Cl- channel CLC-3 and 41.1 41 0.00089 36.3 4.8 53 147-204 641-693 (696)
212 COG2216 KdpB High-affinity K+ 38.9 39 0.00085 35.8 4.2 33 169-203 417-449 (681)
213 PF06177 QueT: QueT transporte 38.5 2.8E+02 0.006 24.4 9.5 47 12-58 44-90 (152)
214 COG4175 ProV ABC-type proline/ 33.8 51 0.0011 33.0 3.9 47 156-205 336-382 (386)
215 PF06341 DUF1056: Protein of u 31.9 2.2E+02 0.0048 21.4 6.9 23 36-58 36-58 (63)
216 TIGR00704 NaPi_cotrn_rel Na/Pi 31.1 3.8E+02 0.0082 26.4 9.6 35 65-99 271-305 (307)
217 PF01036 Bac_rhodopsin: Bacter 28.4 4.6E+02 0.01 24.1 9.3 42 49-92 140-182 (222)
218 PRK09458 pspB phage shock prot 22.8 1.8E+02 0.0038 22.7 4.4 44 70-117 4-47 (75)
219 PF14044 NETI: NETI protein 20.7 1.3E+02 0.0028 22.1 3.1 27 159-186 3-34 (57)
220 PF06667 PspB: Phage shock pro 20.3 3.4E+02 0.0073 21.1 5.5 43 71-117 5-47 (75)
No 1
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=9.5e-51 Score=409.45 Aligned_cols=243 Identities=28% Similarity=0.486 Sum_probs=210.4
Q ss_pred cccchhhchhHHHHHHHHHHHHHHHHHHHHHHH----HHH--------HHHHHHHHHHHHHHhhhhchhHHHHHhhHHHH
Q 017404 2 PILPVVRNQHLLLCTLLICNAAAMEALPIFLDG----LVS--------AWGAILISVTLILLFGEIIPQSVCSRYGLAIG 69 (372)
Q Consensus 2 ~i~~l~~~p~r~L~tiLiGn~~~ni~~~~~~~~----~~~--------~~~a~~i~t~lilvfGEivPK~lA~~~~~~ia 69 (372)
+++++++||+++|+|+|+|||++|++++.++.. +++ ..++++++|+++++|||++||++|.+||++++
T Consensus 39 ~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia 118 (408)
T TIGR03520 39 IVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFA 118 (408)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 468899999999999999999999876654322 222 12345567889999999999999999999999
Q ss_pred HhHhHHHHHHHHhhhhHHHHHHHHHHhH---hCCCCccccCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcccccc
Q 017404 70 STVAPFVRVLVWICYPVAFPISKLLDVL---LGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKT 146 (372)
Q Consensus 70 ~~~a~~l~~~~~l~~Plv~~l~~i~~~l---~g~~~~~~~s~eEL~~ll~~~~~e~~e~G~l~~~E~~~i~~vl~l~~~t 146 (372)
.++++|++++.++|+|++|+++++++++ +|... ..+|++||+.+++. ++++| +.++|+++++|+|+|++++
T Consensus 119 ~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~ 192 (408)
T TIGR03520 119 KFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SNISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTD 192 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCE
Confidence 9999999999999999999999987765 45543 35899999999984 34456 6899999999999999999
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCC
Q 017404 147 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPET 226 (372)
Q Consensus 147 V~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~ 226 (372)
|+|+|+||.++++++.+++++ ++.+.+.+++|||+|||+++.|+++|+|+.||++.....+..+++++ ++++.+||++
T Consensus 193 v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~ 270 (408)
T TIGR03520 193 TKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPEN 270 (408)
T ss_pred eeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCC
Confidence 999999999999999999998 99999999999999999977789999999999987544333457787 5788999999
Q ss_pred CCHHHHHHHHHhcCCcEEEEEecCCC
Q 017404 227 LPLYEILNEFQKGHSHMAVVVRQYNK 252 (372)
Q Consensus 227 ~~l~~aL~~M~~~~~~~a~VVDEyG~ 252 (372)
+++.++++.|++++.|+|+|+||||+
T Consensus 271 ~~l~~ll~~m~~~~~~~aiVvDE~G~ 296 (408)
T TIGR03520 271 KKLDDLLRDFQEKKNHLAIVVDEYGG 296 (408)
T ss_pred CcHHHHHHHHHhcCceEEEEEcCCCC
Confidence 99999999999999999999996655
No 2
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=1e-50 Score=409.54 Aligned_cols=244 Identities=20% Similarity=0.342 Sum_probs=210.1
Q ss_pred cccchhhchhHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHhhhhchhHHHHHhhHHHHHhHhH
Q 017404 2 PILPVVRNQHLLLCTLLICNAAAMEALPIFLDG----LV---SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAP 74 (372)
Q Consensus 2 ~i~~l~~~p~r~L~tiLiGn~~~ni~~~~~~~~----~~---~~~~a~~i~t~lilvfGEivPK~lA~~~~~~ia~~~a~ 74 (372)
+++++++||+++|+|+|+|||++|++++.++.. ++ +.+++++++|+++++|||++||++|.+||+++++++++
T Consensus 36 ~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~ 115 (413)
T PRK11573 36 RVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSF 115 (413)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHH
Confidence 467899999999999999999999876554321 22 23456677889999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHh---HhCCCC----ccccCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccccccc
Q 017404 75 FVRVLVWICYPVAFPISKLLDV---LLGHGR----VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTA 147 (372)
Q Consensus 75 ~l~~~~~l~~Plv~~l~~i~~~---l~g~~~----~~~~s~eEL~~ll~~~~~e~~e~G~l~~~E~~~i~~vl~l~~~tV 147 (372)
|++++.++|+|++|+++++++. ++|.+. ...+|++||+.+++. +. +.++++|+++++|+|+|++++|
T Consensus 116 ~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~eEl~~lv~~----~~--~~l~~~e~~mi~~vl~l~~~~v 189 (413)
T PRK11573 116 LLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVHE----SR--SQISRRNQDMLLSVLDLEKVTV 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHHHHHHHHHH----Hh--hhcCHHHHHHHHHHhccCCCCh
Confidence 9999999999999999887765 456432 246899999999984 22 2599999999999999999999
Q ss_pred ccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC-CC---cccccccccCCcee
Q 017404 148 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-DE---VPVKSVTIRRIPRV 223 (372)
Q Consensus 148 ~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~-~~---~~V~dim~r~v~~V 223 (372)
+|+|+||.++++++.+++++ ++.+.+.+++|||+|||+++.|+++|++|.||++..... .. ..+.++ ++++.+|
T Consensus 190 ~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~V 267 (413)
T PRK11573 190 DDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFV 267 (413)
T ss_pred hhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEe
Confidence 99999999999999999998 999999999999999999888999999999999864322 11 223355 6899999
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEEEecCCCC
Q 017404 224 PETLPLYEILNEFQKGHSHMAVVVRQYNKN 253 (372)
Q Consensus 224 ~~~~~l~~aL~~M~~~~~~~a~VVDEyG~~ 253 (372)
|+++++.++|+.|++++.|+|+|+||||++
T Consensus 268 pe~~~l~~lL~~~~~~~~~~AiVvDEyG~~ 297 (413)
T PRK11573 268 PEGTPLSTQLVKFQRNKKKVGLVVDEYGDI 297 (413)
T ss_pred CCCCcHHHHHHHHHhcCCeEEEEEecCCCe
Confidence 999999999999999999999999988773
No 3
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-49 Score=381.30 Aligned_cols=246 Identities=27% Similarity=0.435 Sum_probs=215.0
Q ss_pred cccchhhchhHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHhhhhchhHHHHHhhHHHHHhHhH
Q 017404 2 PILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLVS---AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAP 74 (372)
Q Consensus 2 ~i~~l~~~p~r~L~tiLiGn~~~ni~~~~~~~----~~~~---~~~a~~i~t~lilvfGEivPK~lA~~~~~~ia~~~a~ 74 (372)
|+.||+++|+++++++|||||++|++++.++. .+++ ..+|+++.|+++++|+|++||++|+.||++++..+++
T Consensus 47 rv~kLL~k~drlig~iLIGNNLvNilasalaT~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~ 126 (423)
T COG4536 47 RVEKLLEKPDRLIGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSF 126 (423)
T ss_pred HHHHHhcCchheeeeeeecccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhH
Confidence 57899999999999999999999987654433 2333 3467888999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHh---HhCCCC----ccccCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccccccc
Q 017404 75 FVRVLVWICYPVAFPISKLLDV---LLGHGR----VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTA 147 (372)
Q Consensus 75 ~l~~~~~l~~Plv~~l~~i~~~---l~g~~~----~~~~s~eEL~~ll~~~~~e~~e~G~l~~~E~~~i~~vl~l~~~tV 147 (372)
++.++.++|+|++|+++++++. ++|.+. +...+.||||.+++. ++++|...+++++|+.+++++++++|
T Consensus 127 ~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV 202 (423)
T COG4536 127 ILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTV 202 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccCHHHHHHHHHH----hhcccccccccHHHHhccccccccee
Confidence 9999999999999999988775 466542 456899999999984 45557777889999999999999999
Q ss_pred ccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCC-ccccccc--ccCCceec
Q 017404 148 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-VPVKSVT--IRRIPRVP 224 (372)
Q Consensus 148 ~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~-~~V~dim--~r~v~~V~ 224 (372)
+|||+||.++..++.|++.+ ++.+.+.++.|+|+|+|.++.|+++|++|.||++++..+.+ ..-.+++ ..++.|||
T Consensus 203 ~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVP 281 (423)
T COG4536 203 SDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVP 281 (423)
T ss_pred eeeeccccceeeecCCCCHH-HHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecC
Confidence 99999999999999999998 99999999999999999999999999999999999765543 2222332 47899999
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEEecCCC
Q 017404 225 ETLPLYEILNEFQKGHSHMAVVVRQYNK 252 (372)
Q Consensus 225 ~~~~l~~aL~~M~~~~~~~a~VVDEyG~ 252 (372)
+.+++.+.|..|++++.|++.||||||+
T Consensus 282 e~Tpl~~QL~~F~~~k~hialVVDEYG~ 309 (423)
T COG4536 282 EGTPLSDQLVAFQRNKKHIALVVDEYGD 309 (423)
T ss_pred CCCcHHHHHHHHHHhcceEEEEEeccCc
Confidence 9999999999999999999999998766
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=7.2e-46 Score=376.45 Aligned_cols=243 Identities=30% Similarity=0.517 Sum_probs=208.5
Q ss_pred ccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHHHHHhhhhchhHHHHHhhHHHH
Q 017404 3 ILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLV----SAWG---------AILISVTLILLFGEIIPQSVCSRYGLAIG 69 (372)
Q Consensus 3 i~~l~~~p~r~L~tiLiGn~~~ni~~~~~~~~~~----~~~~---------a~~i~t~lilvfGEivPK~lA~~~~~~ia 69 (372)
++++.++|+++++++++|||++++..+.++...+ ..+. .++++|+++++|||++||++|+++|++++
T Consensus 49 ~~~~~~~~~~~ls~~qigitl~~i~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va 128 (429)
T COG1253 49 ALKLIERLNRYLSTVQLGITLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVA 128 (429)
T ss_pred HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHH
Confidence 6789999999999999999999977655543222 1111 14567899999999999999999999999
Q ss_pred HhHhHHHHHHHHhhhhHHHHHHHHHHhHh---CCC----CccccCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcc
Q 017404 70 STVAPFVRVLVWICYPVAFPISKLLDVLL---GHG----RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALEL 142 (372)
Q Consensus 70 ~~~a~~l~~~~~l~~Plv~~l~~i~~~l~---g~~----~~~~~s~eEL~~ll~~~~~e~~e~G~l~~~E~~~i~~vl~l 142 (372)
.+.+++++++.++|+|++|++++++++++ |.. .....+.++++ +++ ++.++|.++++|++|++|+|+|
T Consensus 129 ~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l 203 (429)
T COG1253 129 LLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDL 203 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhcc
Confidence 99999999999999999999999988764 432 23346777777 776 5667899999999999999999
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCC--cccccccccCC
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRRI 220 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~--~~V~dim~r~v 220 (372)
++++|+++||||+++++++.+.+++ ++.+.+.+++|||+|||+++.|+++|++|.||++.....++ ...... .+++
T Consensus 204 ~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~ 281 (429)
T COG1253 204 DDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPP 281 (429)
T ss_pred CCcEeeeEeeecccEEEEcCCCCHH-HHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCC
Confidence 9999999999999999999999998 99999999999999999988899999999999998655432 222223 4699
Q ss_pred ceecCCCCHHHHHHHHHhcCCcEEEEEecCCC
Q 017404 221 PRVPETLPLYEILNEFQKGHSHMAVVVRQYNK 252 (372)
Q Consensus 221 ~~V~~~~~l~~aL~~M~~~~~~~a~VVDEyG~ 252 (372)
++||+++++.++|++|++++.|+|+|+||||+
T Consensus 282 ~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~ 313 (429)
T COG1253 282 LFVPETLSLSDLLEEFREERTHMAIVVDEYGG 313 (429)
T ss_pred eEecCCCcHHHHHHHHHHhCCeEEEEEEcCCC
Confidence 99999999999999999999999999998877
No 5
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.96 E-value=4.9e-28 Score=234.41 Aligned_cols=151 Identities=28% Similarity=0.523 Sum_probs=129.7
Q ss_pred HHHHHhHhCCCCccccCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcccccccccccccCccEEEEeCCCChHHHH
Q 017404 91 SKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKEL 170 (372)
Q Consensus 91 ~~i~~~l~g~~~~~~~s~eEL~~ll~~~~~e~~e~G~l~~~E~~~i~~vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea 170 (372)
..+..+++|.+. .|++||+.+++ ++.++|.++++|+++++++|+|.+.+|+++|+||.++++++.+++++ ++
T Consensus 20 ~~~~~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~ 91 (292)
T PRK15094 20 SLLLSQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-EC 91 (292)
T ss_pred HHHHHHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HH
Confidence 333444566443 48999999998 45567999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC--CCcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 171 MNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 171 ~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
.+.+.+++|+|+|||+++.|+++|+|+.+|++..... ....+.++ ++++.++++++++.++++.|++++.+++||+|
T Consensus 92 ~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD 170 (292)
T PRK15094 92 LDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVID 170 (292)
T ss_pred HHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEe
Confidence 9999999999999998666899999999999864322 22347787 57778999999999999999999999999999
Q ss_pred cC
Q 017404 249 QY 250 (372)
Q Consensus 249 Ey 250 (372)
||
T Consensus 171 e~ 172 (292)
T PRK15094 171 EF 172 (292)
T ss_pred CC
Confidence 53
No 6
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-27 Score=219.21 Aligned_cols=155 Identities=26% Similarity=0.498 Sum_probs=138.5
Q ss_pred HHHHHHhHhCCCCccccCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcccccccccccccCccEEEEeCCCChHHH
Q 017404 90 ISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKE 169 (372)
Q Consensus 90 l~~i~~~l~g~~~~~~~s~eEL~~ll~~~~~e~~e~G~l~~~E~~~i~~vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~e 169 (372)
|.++++.+|..+ +-+++||-.++. ++++.+.++.+-..|+.+++++.+.+|+|||+||+.++++..+.++. +
T Consensus 19 fe~L~~~~f~gE---pknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~ 90 (293)
T COG4535 19 FERLLSQLFHGE---PKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E 90 (293)
T ss_pred HHHHHHHHhcCC---CcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence 455665555433 347899999997 57778999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC--CCcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEE
Q 017404 170 LMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVV 247 (372)
Q Consensus 170 a~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VV 247 (372)
++..+.+..||||||+.++.+++.||+..|||++.... ....++++ .||+++||++..+..+|+.|+.++.|||+|+
T Consensus 91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi 169 (293)
T COG4535 91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI 169 (293)
T ss_pred HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence 99999999999999999899999999999999996533 33578887 8999999999999999999999999999999
Q ss_pred ecCCCC
Q 017404 248 RQYNKN 253 (372)
Q Consensus 248 DEyG~~ 253 (372)
|||||+
T Consensus 170 DEfGgV 175 (293)
T COG4535 170 DEFGGV 175 (293)
T ss_pred eccCCe
Confidence 999883
No 7
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.91 E-value=4.9e-26 Score=233.88 Aligned_cols=244 Identities=56% Similarity=0.909 Sum_probs=218.0
Q ss_pred ccchhhchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhHHHHHhHhHHHHHHHH
Q 017404 3 ILPVVRNQHLLLCTLLICNAAAMEA-LPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVW 81 (372)
Q Consensus 3 i~~l~~~p~r~L~tiLiGn~~~ni~-~~~~~~~~~~~~~a~~i~t~lilvfGEivPK~lA~~~~~~ia~~~a~~l~~~~~ 81 (372)
+....++-+.+|+|+++||.+++.+ +++++......|.|+.+++..+++|||++|++++.+|...+...+.|+.+++.+
T Consensus 63 i~~~~k~~~~lL~tlll~n~~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~ 142 (498)
T KOG2118|consen 63 IFPVRKNLHDLLVTLLLCNSIATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSF 142 (498)
T ss_pred hcccccccceeeehheehhhhccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHH
Confidence 4445667788999999999999988 888887777779999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhHhCCCCccccCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcccccccccccccCccEEEEe
Q 017404 82 ICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAID 161 (372)
Q Consensus 82 l~~Plv~~l~~i~~~l~g~~~~~~~s~eEL~~ll~~~~~e~~e~G~l~~~E~~~i~~vl~l~~~tV~dIMtpr~~vvtV~ 161 (372)
+++|+.|+++++ ++.+|........+.++..++.+++.|+.+ |.+..+|..++.+++.+.++.++++|+|..+++.++
T Consensus 143 l~~PI~~p~~~~-d~~lg~~~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~ 220 (498)
T KOG2118|consen 143 LCLPIAYPFSKL-DTALGLNLGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALD 220 (498)
T ss_pred Hhhhhheehhhh-hhhhccccccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeec
Confidence 999999999998 778888777778889999999998888766 899999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccC----CCCCcccccccccCCceecCCCCHHHHHHHHH
Q 017404 162 INAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTIRRIPRVPETLPLYEILNEFQ 237 (372)
Q Consensus 162 ~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~----~~~~~~V~dim~r~v~~V~~~~~l~~aL~~M~ 237 (372)
.+..+..+....+.++||||+||++.+..+.+|.+-...++... .....++.+.+.++++.+|+++++.+.++.|+
T Consensus 221 ~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~ 300 (498)
T KOG2118|consen 221 ANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQ 300 (498)
T ss_pred cccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHh
Confidence 99998767788888999999999997777778776666666654 33456788888899999999999999999999
Q ss_pred hcCCcEEEEEe
Q 017404 238 KGHSHMAVVVR 248 (372)
Q Consensus 238 ~~~~~~a~VVD 248 (372)
+.+.|++.|..
T Consensus 301 ~~~~H~~~v~~ 311 (498)
T KOG2118|consen 301 KGKSHMAVVRN 311 (498)
T ss_pred hhhceeEEEec
Confidence 99999998875
No 8
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.84 E-value=2.8e-19 Score=168.70 Aligned_cols=225 Identities=16% Similarity=0.213 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHhhHHHH---------HhHhHHHHHHHHh
Q 017404 16 TLLICNAAAMEA---LP-IFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIG---------STVAPFVRVLVWI 82 (372)
Q Consensus 16 tiLiGn~~~ni~---~~-~~~~~~~~~~~a~~i~t~lilvfGEivPK~lA~~~~~~ia---------~~~a~~l~~~~~l 82 (372)
+|+-||.++... .+ ++++..+...+|+-+...++...+.+.|.+-|.+-..-+. .+..+|+..-+.+
T Consensus 83 siiGGNlvaAlvgvtva~~vgd~~la~~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~Sli 162 (382)
T COG3448 83 SIIGGNLVAALVGVTVAYFVGDPVLASGLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLI 162 (382)
T ss_pred hhhcchHHHHHHhhhhhhhhCChHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHH
Confidence 455566655432 22 2233344455566666677888899999998877555443 2344555555555
Q ss_pred hhhHHHHHHHHHHhHhCC-------C----------CccccCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh-----
Q 017404 83 CYPVAFPISKLLDVLLGH-------G----------RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGAL----- 140 (372)
Q Consensus 83 ~~Plv~~l~~i~~~l~g~-------~----------~~~~~s~eEL~~ll~~~~~e~~e~G~l~~~E~~~i~~vl----- 140 (372)
+.-...+++.+..+-+.+ + ....|+.+|+.+.+.- -.|.=+|++++-+.+.+-.
T Consensus 163 Lv~~a~lynnl~~r~YPh~~~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~ 238 (382)
T COG3448 163 LVGLALLYNNLTRRTYPHHWLSPPANLHGTADPPPSQRVGFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQAL 238 (382)
T ss_pred HHHHHHHHHHHhcCCCCCccCCCcccccCCCCCCchhccCCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHH
Confidence 555555556655544332 0 1236899999998873 3344567777654443322
Q ss_pred --cccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC---------CC
Q 017404 141 --ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------DE 209 (372)
Q Consensus 141 --~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~---------~~ 209 (372)
.+.+.++.|||++ ++++++.+++++ ++.+++++|++..+||.|+ +.+++|+|+.+|+++.... .+
T Consensus 239 ~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H~ikaLPV~d~-~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~ 314 (382)
T COG3448 239 RRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEHRIKALPVLDE-HRRLVGIVTQRDLLKHARPSPFQRLRFLRP 314 (382)
T ss_pred HHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHcCccccccccc-ccceeeeeeHHHHhhccCcchHHHhhccCC
Confidence 4578899999996 899999999998 9999999999999999984 5699999999999872111 35
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 210 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 210 ~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
.+++.+|..++.++.++++..+++..|...+.|.+||+|
T Consensus 315 ~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 315 PTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred CcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 679999999999999999999999999999999999999
No 9
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.80 E-value=5.2e-19 Score=158.89 Aligned_cols=127 Identities=29% Similarity=0.456 Sum_probs=106.7
Q ss_pred cccchhhchhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhchhHHHHHhhHHHHHhHh
Q 017404 2 PILPVVRNQHLLLCTLLICNAAAMEALPIFLDGL--------VSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVA 73 (372)
Q Consensus 2 ~i~~l~~~p~r~L~tiLiGn~~~ni~~~~~~~~~--------~~~~~a~~i~t~lilvfGEivPK~lA~~~~~~ia~~~a 73 (372)
++.++++||+++++|+++||+++|++++.++... .+.++++++.++++++|||++||.+|.+||++++.+.+
T Consensus 44 ~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a 123 (183)
T PF01595_consen 44 RLLKLLERPERLLSTILLGNTLSNVLAGVLATVLASNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLA 123 (183)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4788999999999999999999998776444322 23345667788899999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhHh---CCCC--ccccCHHHHHHHHHhcccccCCCCCCCHHH
Q 017404 74 PFVRVLVWICYPVAFPISKLLDVLL---GHGR--VALFRRAELKTLVNLHGNEAGKGGELTHDE 132 (372)
Q Consensus 74 ~~l~~~~~l~~Plv~~l~~i~~~l~---g~~~--~~~~s~eEL~~ll~~~~~e~~e~G~l~~~E 132 (372)
++++++.++++|++++++++.+++. |.+. +..+|+|||+.+++ +++++|.++++|
T Consensus 124 ~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~~~~s~eel~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 124 PLLRVLMILLYPLVWLLSFISNKILKLFGIENEEDPAVSEEELRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence 9999999999999999998887654 4442 45799999999999 466779998876
No 10
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.71 E-value=1.9e-16 Score=162.21 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=114.1
Q ss_pred ccCHHHHHHHHHhcccccCCC------CCCCHHHHHHHHHhhcccccccccccccCccEEEEeCCCChHHHHHHHHHH--
Q 017404 105 LFRRAELKTLVNLHGNEAGKG------GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILE-- 176 (372)
Q Consensus 105 ~~s~eEL~~ll~~~~~e~~e~------G~l~~~E~~~i~~vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~-- 176 (372)
.++.+|+..+++. ..++ +.++++|++.+++++++++.+|+++|++ +++++++++|+. ++.+.+++
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 4778999998873 3333 4799999999999999999999999995 889999999998 99999985
Q ss_pred ---cCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 177 ---KGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 177 ---~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++...+||++ +.++++|+|+.+|++... .+.+++++|.++++++++++++.+|++.|++++...+||+|
T Consensus 162 ~~~~~~~~v~Vvd-~~~~l~GvV~l~dLl~a~--~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD 233 (449)
T TIGR00400 162 KTKEDIYTLYVTN-ESKHLKGVLSIRDLILAK--PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD 233 (449)
T ss_pred CCccceeEEEEEC-CCCeEEEEEEHHHHhcCC--CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc
Confidence 3344566666 457899999999998643 34679999888888999999999999999999999999999
No 11
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.68 E-value=1.2e-16 Score=148.56 Aligned_cols=108 Identities=17% Similarity=0.307 Sum_probs=98.7
Q ss_pred HHHhhcccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC--CCcccc
Q 017404 136 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVK 213 (372)
Q Consensus 136 i~~vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~--~~~~V~ 213 (372)
+.++.++++.+|+++|++ +++++.+++|++ ++.+++.+++++..||+|+ |+++|+++..|+..+.++ -+.+|+
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~ 237 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS 237 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence 455668899999999997 889999999998 9999999999999999984 499999999999886554 357899
Q ss_pred cccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 214 SVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 214 dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++|.++++++.+|+.+.+|++.|..+++..++|+|
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d 272 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD 272 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence 99999999999999999999999999999999999
No 12
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.65 E-value=2e-15 Score=154.55 Aligned_cols=132 Identities=17% Similarity=0.306 Sum_probs=112.4
Q ss_pred cccCHHHHHHHHHhcccccCCCCCCCH-----HHHHHHHHhhcccccccccccccCccEEEEeCCCChHHHHHHHHHHcC
Q 017404 104 ALFRRAELKTLVNLHGNEAGKGGELTH-----DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 178 (372)
Q Consensus 104 ~~~s~eEL~~ll~~~~~e~~e~G~l~~-----~E~~~i~~vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~ 178 (372)
..+|++|+..++.. ....|.+.+ +|++++++++++++ .|.+ ++++++++.++. ++++.|.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~-----~~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAEN-----GIIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccC-----ceec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 35799999998874 334688884 89999999997765 4654 667899999998 9999999999
Q ss_pred CceeeEeeCCC--CcEEEEEehhhHhccCCCCCcccccccc-cCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 179 HSRVPVYYEEP--TNIIGLILVKNLLTIHPEDEVPVKSVTI-RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 179 ~sriPV~d~~~--d~iVGIVs~kDLl~~~~~~~~~V~dim~-r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++++||++++. ++++|+|+.+|++... ....+++++|. ++++++++++++.++++.|++++.+.+||+|
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD 182 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVK-DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD 182 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhh-cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc
Confidence 99999998543 6999999999998643 23567999987 4899999999999999999999999999999
No 13
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.59 E-value=6.5e-15 Score=142.22 Aligned_cols=112 Identities=22% Similarity=0.362 Sum_probs=99.6
Q ss_pred HHHHHHhh-----cccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC
Q 017404 133 TTIIAGAL-----ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE 207 (372)
Q Consensus 133 ~~~i~~vl-----~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~ 207 (372)
+.|+.+++ .-+=.+|+|||+|..+..++.++++++ +..++..+.|++||||++. ..+++|+|+.||+....+
T Consensus 171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~~- 247 (432)
T COG4109 171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKKP- 247 (432)
T ss_pred HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCCC-
Confidence 45555555 334568999999999999999999998 9999999999999999985 558999999999987543
Q ss_pred CCcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 208 DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 208 ~~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++++..+|.+++.+|.+.+++..+.+.|.-.+..++||+|
T Consensus 248 -~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~ 287 (432)
T COG4109 248 -STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD 287 (432)
T ss_pred -CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEc
Confidence 6789999999999999999999999999999999999999
No 14
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.52 E-value=2.3e-13 Score=140.81 Aligned_cols=131 Identities=20% Similarity=0.283 Sum_probs=111.0
Q ss_pred cccCHHHHHHHHHhcccccCCCCCCC-----HHHHHHHHHhhcccccccccccccCccEEEEeCCCChHHHHHHHHHHcC
Q 017404 104 ALFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 178 (372)
Q Consensus 104 ~~~s~eEL~~ll~~~~~e~~e~G~l~-----~~E~~~i~~vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~ 178 (372)
..+|++||...+. +....|.|. ++++++++++.+ ++++|.+ ++++++++.++. ++.+.|.+++
T Consensus 50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence 3579999999887 344457777 477889988885 4567774 778899999998 9999999999
Q ss_pred CceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccc-cCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 179 HSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTI-RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 179 ~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~-r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++++||++ +.++++|+|+.+|+.... ....++.++|. ++++++++++++.++++.|.+++.+.+||+|
T Consensus 118 ~~~lpVvd-~~g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD 186 (486)
T PRK05567 118 ISGVPVVD-ENGKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD 186 (486)
T ss_pred CCEEEEEc-cCCEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 99999998 467999999999997543 23467899987 7889999999999999999999999999999
No 15
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=2.1e-13 Score=112.00 Aligned_cols=91 Identities=25% Similarity=0.383 Sum_probs=79.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC--CCcccccccccCCceecCCCCHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEIL 233 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~~aL 233 (372)
++.+++++.++. ++.+.|.+++++++||+++ .++++|+++.+|+.+...+ .+.++.++|..+++++++++++.+|+
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 456889999998 9999999999999999984 5689999999999874322 23568899988899999999999999
Q ss_pred HHHHhcCCcEEEEEe
Q 017404 234 NEFQKGHSHMAVVVR 248 (372)
Q Consensus 234 ~~M~~~~~~~a~VVD 248 (372)
+.|.+++.+.+||+|
T Consensus 80 ~~m~~~~~~~lpVvd 94 (111)
T cd04603 80 RIFRETEPPVVAVVD 94 (111)
T ss_pred HHHHHcCCCeEEEEc
Confidence 999999999999998
No 16
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.50 E-value=1.3e-13 Score=135.28 Aligned_cols=104 Identities=18% Similarity=0.125 Sum_probs=89.9
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC----CCccccccccc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIR 218 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~----~~~~V~dim~r 218 (372)
...+|+++|++..++.++++++|+. ++++.|.++++..+||++ ++++++|+|+.+|+.+.... .+.++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd-~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICD-DNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEc-CCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 6678999999644778999999998 999999998888888887 45789999999999764322 23579999989
Q ss_pred CCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 219 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 219 ~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++++++++.+|++.|.+++.+.+||+|
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~ 307 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVAD 307 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence 999999999999999999999999999998
No 17
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=3.5e-13 Score=109.29 Aligned_cols=79 Identities=14% Similarity=0.318 Sum_probs=71.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 235 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 235 (372)
+++++++++++. ++.+.|.+++++.+||+++++++++|+++.+|+.+... +.++++++++.+|++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence 578999999998 99999999999999999854468999999999986321 6789999999999999
Q ss_pred HHhcCCcEEEEEe
Q 017404 236 FQKGHSHMAVVVR 248 (372)
Q Consensus 236 M~~~~~~~a~VVD 248 (372)
|.+++.+.+||+|
T Consensus 68 m~~~~~~~lpVvd 80 (98)
T cd04618 68 LLKNKIHRLPVID 80 (98)
T ss_pred HHHCCCCEeeEEE
Confidence 9999999999999
No 18
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=6.4e-13 Score=110.29 Aligned_cols=91 Identities=16% Similarity=0.243 Sum_probs=74.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCC-----cccc------cccccCCceec
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-----VPVK------SVTIRRIPRVP 224 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~-----~~V~------dim~r~v~~V~ 224 (372)
++.++++++++. ++.+.|.+++++++||+++ .++++|+++.+|++.....+. .++. ..|..++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 467899999998 9999999999999999984 678999999999986432211 1122 23345678999
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 225 ETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 225 ~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd 103 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVD 103 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEEC
Confidence 999999999999999999999998
No 19
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=6.6e-13 Score=109.07 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=79.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccC-C----CCCcccccccccCCceecCCCCHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-P----EDEVPVKSVTIRRIPRVPETLPLY 230 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~-~----~~~~~V~dim~r~v~~V~~~~~l~ 230 (372)
++.+++++.++. ++++.|.+++++.+||++++.++++|+++.+|+++.. . ....++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 567899999998 9999999999999999985336999999999998631 1 123568899888899999999999
Q ss_pred HHHHHHHhcCCcEEEEEe
Q 017404 231 EILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 231 ~aL~~M~~~~~~~a~VVD 248 (372)
++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~~Vvd 98 (114)
T cd04630 81 YCARLMERTNIRRAPVVE 98 (114)
T ss_pred HHHHHHHHcCCCEeeEee
Confidence 999999999999999998
No 20
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=7.6e-13 Score=107.52 Aligned_cols=91 Identities=16% Similarity=0.281 Sum_probs=79.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 235 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 235 (372)
++.++++++++. ++++.+.+++++++||+++ .++++|+++.+|+++.......++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 456889999998 9999999999999999984 47999999999998654333346888888889999999999999999
Q ss_pred HHhcCCcEEEEEe
Q 017404 236 FQKGHSHMAVVVR 248 (372)
Q Consensus 236 M~~~~~~~a~VVD 248 (372)
|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~Vv~ 93 (110)
T cd04605 81 MERHNISALPVVD 93 (110)
T ss_pred HHHhCCCEEeEEC
Confidence 9999999999998
No 21
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.46 E-value=2.8e-13 Score=118.02 Aligned_cols=118 Identities=22% Similarity=0.324 Sum_probs=93.8
Q ss_pred CCCCCCHHH---HHHHHHhhcc--cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEeh
Q 017404 124 KGGELTHDE---TTIIAGALEL--TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 198 (372)
Q Consensus 124 e~G~l~~~E---~~~i~~vl~l--~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~ 198 (372)
|.|.+++.= +++++...+. ...+++.+|+. +++.+.+++++. ++++.|.++|+|.+||+++ |.++|-|+.
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE 113 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE 113 (187)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence 357777742 3344433333 44578999985 899999999998 9999999999999999974 689999999
Q ss_pred hhHhccCCC-----CCcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 199 KNLLTIHPE-----DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 199 kDLl~~~~~-----~~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++.+...+ .+.+++++|-.+.++|++++++..+-+.+..+ ..+.|++
T Consensus 114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e 166 (187)
T COG3620 114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVVE 166 (187)
T ss_pred HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEe
Confidence 999885422 24689999999999999999999888888766 4556665
No 22
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=8.8e-13 Score=108.62 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=79.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC-----CCCcccccccccCCceecCCCCHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----EDEVPVKSVTIRRIPRVPETLPLY 230 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~-----~~~~~V~dim~r~v~~V~~~~~l~ 230 (372)
.+.++++++++. ++++.|.+.++..+||+++ .++++|+++.+|+.+... ....++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH 79 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence 356789999998 9999999999999999984 568999999999986432 123578899888999999999999
Q ss_pred HHHHHHHhcCCcEEEEEe
Q 017404 231 EILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 231 ~aL~~M~~~~~~~a~VVD 248 (372)
++++.|.+++.+.+||+|
T Consensus 80 ~a~~~m~~~~~~~lpVvd 97 (114)
T cd04619 80 DVWQVMKQRGLKNIPVVD 97 (114)
T ss_pred HHHHHHHHcCCCeEEEEC
Confidence 999999999999999998
No 23
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.45 E-value=3.9e-13 Score=131.46 Aligned_cols=103 Identities=15% Similarity=0.066 Sum_probs=89.2
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC---CCCcccccccccCC
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRI 220 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~---~~~~~V~dim~r~v 220 (372)
..+|+++|.+..++.++++++++. ++.+.|.+++...+||+++ .++++|+|+.+|+.+... ....++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 567999998743378999999998 9999999999999999984 568999999999875321 23456899998899
Q ss_pred ceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 221 PRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 221 ~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++++++.+|++.|.+++...+||+|
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd 301 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVD 301 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 9999999999999999999999999998
No 24
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.2e-12 Score=106.27 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=78.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC-----CCcccccccccCCceecCCCCHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSVTIRRIPRVPETLPLY 230 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~-----~~~~V~dim~r~v~~V~~~~~l~ 230 (372)
++.+++++.++. ++.+.|.+++++++||+++ .++++|+++.+|+++.... ...++.++|.+++.++++++++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECC-CCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 456789999998 9999999999999999984 4699999999999864321 13468898878889999999999
Q ss_pred HHHHHHHhcCCcEEEEEe
Q 017404 231 EILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 231 ~aL~~M~~~~~~~a~VVD 248 (372)
++++.|.+.+.+.+||+|
T Consensus 80 ~~l~~~~~~~~~~~~Vv~ 97 (113)
T cd04623 80 EAMALMTERRFRHLPVVD 97 (113)
T ss_pred HHHHHHHHcCCCEeEEEe
Confidence 999999999999999998
No 25
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=9.2e-13 Score=107.38 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=79.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCC---CcccccccccCCceecCCCCHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---EVPVKSVTIRRIPRVPETLPLYEI 232 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~---~~~V~dim~r~v~~V~~~~~l~~a 232 (372)
++.+++++++++ ++++.|.+++++++||+++ .++++|+++.+|++...... +.++.++|.++++++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 456789999998 9999999999999999984 56899999999998753321 346888888889999999999999
Q ss_pred HHHHHhcCCcEEEEEe
Q 017404 233 LNEFQKGHSHMAVVVR 248 (372)
Q Consensus 233 L~~M~~~~~~~a~VVD 248 (372)
++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (111)
T cd04626 80 LDIMREKQIGRLPVVD 95 (111)
T ss_pred HHHHHHcCCCeeeEeE
Confidence 9999999999999998
No 26
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1e-12 Score=109.07 Aligned_cols=91 Identities=19% Similarity=0.307 Sum_probs=79.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCC--------------CcccccccccCCc
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--------------EVPVKSVTIRRIP 221 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~--------------~~~V~dim~r~v~ 221 (372)
++.+++++.++. ++.+.|.+++++++||+++ .++++|+++.+|++...... ..++.++|.++++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDG-DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECC-CCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 567899999998 9999999999999999984 47899999999997643221 2368888888899
Q ss_pred eecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 222 RVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 222 ~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++++++++.++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~ 107 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVD 107 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEc
Confidence 999999999999999999999999998
No 27
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.44 E-value=1e-12 Score=107.00 Aligned_cols=91 Identities=43% Similarity=0.708 Sum_probs=77.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCC--cccccccccCCceecCCCCHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRRIPRVPETLPLYEIL 233 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~--~~V~dim~r~v~~V~~~~~l~~aL 233 (372)
++++++++.++. ++.+.|.+.+++.+||++++.++++|+++.+|+++...... .++.++ +++++++++++++.+++
T Consensus 2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~ 79 (111)
T cd04590 2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDLL 79 (111)
T ss_pred ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHHH
Confidence 677899999998 99999999999999999854268999999999987543221 346665 57889999999999999
Q ss_pred HHHHhcCCcEEEEEe
Q 017404 234 NEFQKGHSHMAVVVR 248 (372)
Q Consensus 234 ~~M~~~~~~~a~VVD 248 (372)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~Vv~ 94 (111)
T cd04590 80 EEMRKERSHMAIVVD 94 (111)
T ss_pred HHHHhcCCcEEEEEE
Confidence 999999999999998
No 28
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=1.5e-12 Score=105.88 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=79.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 235 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 235 (372)
++.++++++++. ++.+.|.+++++.+||+++ .++++|+++.+|++... ...++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAHM 78 (108)
T ss_pred ccEEeCCCCCHH-HHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHHH
Confidence 567899999998 9999999999999999984 57899999999998643 2457889988888999999999999999
Q ss_pred HHhcCCcEEEEEe
Q 017404 236 FQKGHSHMAVVVR 248 (372)
Q Consensus 236 M~~~~~~~a~VVD 248 (372)
|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~Vv~ 91 (108)
T cd04596 79 MIWEGIEMLPVVD 91 (108)
T ss_pred HHHcCCCeeeEEc
Confidence 9999999999998
No 29
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.8e-12 Score=108.63 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=76.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCc-----------------cccccccc
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV-----------------PVKSVTIR 218 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~-----------------~V~dim~r 218 (372)
++++++++.++. ++++.|.+++++++||+++ .++++|+++.+|++........ ...+.|.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDE-KGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECC-CCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 567899999998 9999999999999999984 4799999999999875422111 12245667
Q ss_pred CCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 219 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 219 ~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++.++++++++.+|++.|.+++.+.+||+|
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd 109 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVD 109 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEEC
Confidence 888999999999999999999999999998
No 30
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.42 E-value=1.5e-12 Score=106.96 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=78.0
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC----CCcccccccccCCceecCCCCHHHH
Q 017404 157 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYEI 232 (372)
Q Consensus 157 vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~~a 232 (372)
+.++++++++. ++.+.|.+.+++++||+++ .++++|+++.+|++..... ...++.++|.++++++++++++.++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (115)
T cd04593 3 PPVLSATTPLR-EAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA 80 (115)
T ss_pred CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence 45788999998 9999999999999999984 4699999999999874322 1234788888889999999999999
Q ss_pred HHHHHhcCCcEEEEEe
Q 017404 233 LNEFQKGHSHMAVVVR 248 (372)
Q Consensus 233 L~~M~~~~~~~a~VVD 248 (372)
++.|.+++.+.+||+|
T Consensus 81 l~~~~~~~~~~~~Vvd 96 (115)
T cd04593 81 LDRMASRGLRQLPVVD 96 (115)
T ss_pred HHHHHHcCCceeeEEe
Confidence 9999999999999998
No 31
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.4e-12 Score=108.41 Aligned_cols=92 Identities=16% Similarity=0.285 Sum_probs=79.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCC---------------CcccccccccCC
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---------------EVPVKSVTIRRI 220 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~---------------~~~V~dim~r~v 220 (372)
++.+++++.++. ++++.|.+++++++||++++.++++|+++.+|++...... ..++.++|.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 456789999998 9999999999999999985437999999999998643221 246788887889
Q ss_pred ceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 221 PRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 221 ~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++++++.++++.|.+.+.+.+||+|
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 108 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVD 108 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEc
Confidence 9999999999999999999999999998
No 32
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.4e-12 Score=108.63 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=75.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCC--C-----------cccccccccCCce
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--E-----------VPVKSVTIRRIPR 222 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~--~-----------~~V~dim~r~v~~ 222 (372)
++.++++++++. ++++.|.+++++++||++++.++++|+++.+|+++..... . ..+.++|.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 456789999998 9999999999999999985336899999999987642110 0 1122456788889
Q ss_pred ecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 223 VPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 223 V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++++.+|++.|.+++.+.+||+|
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd 106 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVD 106 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEEC
Confidence 99999999999999999999999998
No 33
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.41 E-value=2.7e-12 Score=130.66 Aligned_cols=116 Identities=23% Similarity=0.258 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHhhcccccccccccccCccEEEEeCCCChHHHHHHHHHHcC-----CceeeEeeCCCCcEEEEEehhhH
Q 017404 127 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG-----HSRVPVYYEEPTNIIGLILVKNL 201 (372)
Q Consensus 127 ~l~~~E~~~i~~vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~-----~sriPV~d~~~d~iVGIVs~kDL 201 (372)
.+++++++.++..+.+++.+++.+|+. ++++++++.|+. ++++++++.+ ...+.|+| ..++++|+++.+++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD-~~~~L~Gvvsl~~L 189 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVD-EKGKLLGVVSLRDL 189 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEEC-CccceEEEeeHHHH
Confidence 488999999999999999999999995 899999999998 9999999543 34567777 45589999999999
Q ss_pred hccCCCCCcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 202 LTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 202 l~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+...+ +..++++|.+.+++|+++++.+++.+.|++++.-.+||||
T Consensus 190 l~a~~--~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd 234 (451)
T COG2239 190 LTAEP--DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD 234 (451)
T ss_pred hcCCc--HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence 86443 6789999988899999999999999999999999999999
No 34
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2.4e-12 Score=105.44 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=75.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCC---------CcccccccccCCceecCC
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---------EVPVKSVTIRRIPRVPET 226 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~---------~~~V~dim~r~v~~V~~~ 226 (372)
++++++.++++. ++.+.|.+++++++||+++ .++++|+++.+|+++..... +.++.++|.+++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 567899999998 9999999999999999984 56899999999998754321 356888887889999999
Q ss_pred CCHHHHHHHHHhcCCcEEEEEe
Q 017404 227 LPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 227 ~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++.++++.|.+.+ .+||+|
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~ 99 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVD 99 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEe
Confidence 99999999998764 589998
No 35
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.40 E-value=3.3e-12 Score=103.58 Aligned_cols=90 Identities=18% Similarity=0.319 Sum_probs=78.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCC---cccccccccCCceecCCCCHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE---VPVKSVTIRRIPRVPETLPLYEI 232 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~---~~V~dim~r~v~~V~~~~~l~~a 232 (372)
++.+++++.++. ++++.|.+.+++++||+++ ++++|+++.+|+++...... .++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 456789999998 9999999999999999984 78999999999987543321 25678888899999999999999
Q ss_pred HHHHHhcCCcEEEEEe
Q 017404 233 LNEFQKGHSHMAVVVR 248 (372)
Q Consensus 233 L~~M~~~~~~~a~VVD 248 (372)
++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~V~~ 94 (111)
T cd04612 79 LKRMAERDIGRLPVVD 94 (111)
T ss_pred HHHHHhCCCCeeeEEc
Confidence 9999999999999998
No 36
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.40 E-value=3.8e-12 Score=103.22 Aligned_cols=90 Identities=19% Similarity=0.268 Sum_probs=78.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC---CCcccccccccCCceecCCCCHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRVPETLPLYEI 232 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~---~~~~V~dim~r~v~~V~~~~~l~~a 232 (372)
++.+++++.++. ++.+.|.++++..+||+++ ++++|+++.+|+++.... ...++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 456789999998 9999999999999999984 789999999999875422 2457888888889999999999999
Q ss_pred HHHHHhcCCcEEEEEe
Q 017404 233 LNEFQKGHSHMAVVVR 248 (372)
Q Consensus 233 L~~M~~~~~~~a~VVD 248 (372)
++.|.+.+.+.+||+|
T Consensus 79 l~~~~~~~~~~~~Vv~ 94 (111)
T cd04611 79 RQLMREHGIRHLVVVD 94 (111)
T ss_pred HHHHHHcCCeEEEEEC
Confidence 9999999999999998
No 37
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.40 E-value=2.2e-12 Score=132.80 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=89.1
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCce
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 222 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~ 222 (372)
...++.++|++ ++++++++.++. ++++.|.+++++.+||++ +.++++|+|+.+|+..... ..++.++|.+++++
T Consensus 87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD-~~gklvGIVT~rDL~~~~~--~~~V~diMt~~~it 160 (479)
T PRK07807 87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVD-EEGRPVGVVTEADCAGVDR--FTQVRDVMSTDLVT 160 (479)
T ss_pred hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEEC-CCCeEEEEEeHHHHhcCcc--CCCHHHhccCCceE
Confidence 45568899985 778999999998 999999999999999998 4568999999999975432 35799999999999
Q ss_pred ecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 223 VPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 223 V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++++.+|++.|.+++.+.+||+|
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD 186 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVD 186 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEc
Confidence 99999999999999999999999998
No 38
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=3.4e-12 Score=105.60 Aligned_cols=91 Identities=22% Similarity=0.300 Sum_probs=78.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC-------------CCcccccccccCCce
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-------------DEVPVKSVTIRRIPR 222 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~-------------~~~~V~dim~r~v~~ 222 (372)
++.++.++.++. ++.+.|.+.+++++||+++ .++++|+++.+|+++.... ...++.++|.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456789999998 9999999999999999984 4799999999999864321 245678888788999
Q ss_pred ecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 223 VPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 223 V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVD 105 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence 99999999999999999999999998
No 39
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=3.3e-12 Score=109.33 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=78.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC---------------------------C
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------------------------D 208 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~---------------------------~ 208 (372)
++.++++++++. ++++.|.+.+++++||+++ .++++|+++.+|+++.... .
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 456789999998 9999999999999999984 5799999999999874321 1
Q ss_pred CcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 209 EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 209 ~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+.+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~ 119 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD 119 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 3468899888888999999999999999999999999998
No 40
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=3.9e-12 Score=103.66 Aligned_cols=91 Identities=19% Similarity=0.279 Sum_probs=78.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC---CCcccccccccCCceecCCCCHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRVPETLPLYEI 232 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~---~~~~V~dim~r~v~~V~~~~~l~~a 232 (372)
++.+++.+.++. ++.+.|.+.+++++||+++ .++++|+++.+|+++.... ...++.++|.++++.+++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDP-DERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECC-CCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence 345789999998 9999999999999999985 4799999999999764322 2357888888889999999999999
Q ss_pred HHHHHhcCCcEEEEEe
Q 017404 233 LNEFQKGHSHMAVVVR 248 (372)
Q Consensus 233 L~~M~~~~~~~a~VVD 248 (372)
++.|.+++...+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (112)
T cd04624 80 AKLMRKNNIRHHLVVD 95 (112)
T ss_pred HHHHHHcCccEEEEEc
Confidence 9999999999999998
No 41
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=3.3e-12 Score=103.89 Aligned_cols=91 Identities=23% Similarity=0.364 Sum_probs=78.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC--CCcccccccccCCceecCCCCHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEIL 233 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~~aL 233 (372)
++.++++++++. ++.+.+.+.+++++||+++ .++++|+++.+|+.+.... ...++.++|.++++++++++++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 456789999998 9999999899999999984 4689999999999864321 23578899888999999999999999
Q ss_pred HHHHhcCCcEEEEEe
Q 017404 234 NEFQKGHSHMAVVVR 248 (372)
Q Consensus 234 ~~M~~~~~~~a~VVD 248 (372)
+.|.+++...+||+|
T Consensus 80 ~~~~~~~~~~~~Vv~ 94 (111)
T cd04639 80 RLMQQGGAPAVPVVD 94 (111)
T ss_pred HHHHhcCCceeeEEc
Confidence 999999999999998
No 42
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=2.8e-12 Score=107.66 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=73.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccC----------CCCCcccccccccCCce--e
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----------PEDEVPVKSVTIRRIPR--V 223 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~----------~~~~~~V~dim~r~v~~--V 223 (372)
++.+++.++++. ++++.|.++++..+||+++ .++++|+++.+|+.... .....+++++|.++... +
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~ 79 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL 79 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence 356889999998 9999999999999999984 46899999999998521 11235688897655433 3
Q ss_pred ----cCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 224 ----PETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 224 ----~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd 108 (126)
T cd04640 80 DLEELENASVGDVVETLKASGRQHALVVD 108 (126)
T ss_pred cHHHhccCcHHHHHHHHHHCCCceEEEEE
Confidence 3789999999999999999999999
No 43
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.38 E-value=4e-12 Score=103.41 Aligned_cols=91 Identities=19% Similarity=0.289 Sum_probs=79.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC----CCcccccccccCCceecCCCCHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 231 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~~ 231 (372)
++.++++++++. ++.+.|.+.+++++||+++ .++++|+++.+|+.+.... +..++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDD-DGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECC-CCCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 456799999998 9999999999999999984 4689999999999864322 125688998888999999999999
Q ss_pred HHHHHHhcCCcEEEEEe
Q 017404 232 ILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 232 aL~~M~~~~~~~a~VVD 248 (372)
+++.|.+.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~Vv~ 96 (114)
T cd04613 80 ALKKFEDSDYEQLPVVD 96 (114)
T ss_pred HHHHHhhCCccEeeEEe
Confidence 99999999999999998
No 44
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=3.3e-12 Score=105.82 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=77.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC----CCccccccccc--CCceecCCCCH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIR--RIPRVPETLPL 229 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~----~~~~V~dim~r--~v~~V~~~~~l 229 (372)
++.++++++++. ++++.|.+++.+.+||+++ .++++|+++.+|+.+.... ...++.++|.+ +++++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 456899999998 9999999999999999984 4689999999998874321 23467788764 68899999999
Q ss_pred HHHHHHHHhcCCcEEEEEe
Q 017404 230 YEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 230 ~~aL~~M~~~~~~~a~VVD 248 (372)
.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~lpVvd 98 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVE 98 (118)
T ss_pred HHHHHHHHHcCCCEeeEEe
Confidence 9999999999999999999
No 45
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.38 E-value=4.8e-12 Score=102.79 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=78.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCC--CcccccccccCCceecCCCCHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVKSVTIRRIPRVPETLPLYEIL 233 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~--~~~V~dim~r~v~~V~~~~~l~~aL 233 (372)
++++++.++++. ++.+.|.+.+++++||+++ ++++|+++.+|+++....+ ..++.++|.++++++++++++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 456789999998 9999999999999999984 6899999999998754322 2468888878889999999999999
Q ss_pred HHHHhcCCcEEEEEe
Q 017404 234 NEFQKGHSHMAVVVR 248 (372)
Q Consensus 234 ~~M~~~~~~~a~VVD 248 (372)
+.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~V~~ 93 (110)
T cd04588 79 RLMNKHNVGRLIVTD 93 (110)
T ss_pred HHHHhcCCCEEEEEC
Confidence 999999999999998
No 46
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=2.3e-12 Score=105.63 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=75.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcC-CceeeEeeCCCCcEEEEEehhhHhccCCC--CCccccccccc--CCceecCCCCHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIR--RIPRVPETLPLY 230 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~-~sriPV~d~~~d~iVGIVs~kDLl~~~~~--~~~~V~dim~r--~v~~V~~~~~l~ 230 (372)
++.++++++++. ++.+.|.+++ .+++||+++ .++++|+++.+|++..... ...++.++|.. +++.+++++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 456789999998 9999887665 899999984 5689999999999875432 23578888642 356899999999
Q ss_pred HHHHHHHhcCCcEEEEEe
Q 017404 231 EILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 231 ~aL~~M~~~~~~~a~VVD 248 (372)
++++.|++++.+.+||+|
T Consensus 80 ~a~~~~~~~~~~~l~Vv~ 97 (114)
T cd04801 80 EVLKLLEEQGLDELAVVE 97 (114)
T ss_pred HHHHHHHHCCCCeeEEEc
Confidence 999999999999999998
No 47
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.38 E-value=5.4e-12 Score=102.79 Aligned_cols=90 Identities=18% Similarity=0.219 Sum_probs=78.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC----CCcccccccccCCceecCCCCHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 231 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~~ 231 (372)
++++++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|++..... ...++.++|.++++.+++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence 345789999998 9999999999999999984 689999999999864321 245788888788999999999999
Q ss_pred HHHHHHhcCCcEEEEEe
Q 017404 232 ILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 232 aL~~M~~~~~~~a~VVD 248 (372)
+++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04589 79 ALLLMTRHRIHRVVVRE 95 (111)
T ss_pred HHHHHHHhCccEEEEee
Confidence 99999999999999998
No 48
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.38 E-value=7.3e-12 Score=101.01 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=76.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 235 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 235 (372)
++.+++++.++. ++.+.|.+++++++||+++ .|+++|+++.+|+++... .++.++|.++...+++++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 456789999998 9999999999999999974 579999999999987532 34788877777889999999999999
Q ss_pred HHhcCCcEEEEEe
Q 017404 236 FQKGHSHMAVVVR 248 (372)
Q Consensus 236 M~~~~~~~a~VVD 248 (372)
|.+++...+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (106)
T cd04582 77 MFAHDMSWLPCVD 89 (106)
T ss_pred HHHCCCCeeeEEC
Confidence 9999999999998
No 49
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.37 E-value=6.7e-12 Score=101.43 Aligned_cols=90 Identities=16% Similarity=0.245 Sum_probs=78.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 235 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 235 (372)
++.+++++.++. ++.+.|.++++.++||+++ +++++|+++.+|++.... ...++.++|.+.++++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 456789999998 9999999999999999984 468999999999986532 2356888888888999999999999999
Q ss_pred HHhcCCcEEEEEe
Q 017404 236 FQKGHSHMAVVVR 248 (372)
Q Consensus 236 M~~~~~~~a~VVD 248 (372)
|.+.+.+.+||+|
T Consensus 80 ~~~~~~~~~~vv~ 92 (109)
T cd04583 80 VLKRGPKYVPVVD 92 (109)
T ss_pred HHHcCCceeeEEC
Confidence 9999999999998
No 50
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.37 E-value=3e-12 Score=135.06 Aligned_cols=103 Identities=15% Similarity=0.205 Sum_probs=89.4
Q ss_pred ccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC---C-CCcccccccc
Q 017404 142 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---E-DEVPVKSVTI 217 (372)
Q Consensus 142 l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~---~-~~~~V~dim~ 217 (372)
++..+|+|+|++ +..++++++++. ++.+.+.+++++.+||+|+ +++++|+|+.+|+.+... . .+.++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 467789999986 556899999998 9999999999999999984 568999999999987321 1 2357889988
Q ss_pred cCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 218 RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 218 r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++++++++++++.++++.|.+++.+.+||+|
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd 550 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVE 550 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEe
Confidence 8899999999999999999999999999998
No 51
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=6.2e-12 Score=101.11 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=77.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 235 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 235 (372)
++.++++++++. ++++.|.+++++.+||++ + ++++|+++.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 456789999998 999999999999999997 3 68999999999987542 356888888888999999999999999
Q ss_pred HHhcCCcEEEEEe
Q 017404 236 FQKGHSHMAVVVR 248 (372)
Q Consensus 236 M~~~~~~~a~VVD 248 (372)
|.+++...+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (105)
T cd04599 77 MEEKKIERLPVLR 89 (105)
T ss_pred HHHcCCCEeeEEE
Confidence 9999999999998
No 52
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=6.9e-12 Score=102.66 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=77.2
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC---CCCcccccccccCCceecCCCCHHHHH
Q 017404 157 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRIPRVPETLPLYEIL 233 (372)
Q Consensus 157 vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~---~~~~~V~dim~r~v~~V~~~~~l~~aL 233 (372)
.+++++++++. ++++.|.+.++..+||+++ +++++|+++.+|+++... ....++.++|..++.++++++++.+++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 45789999998 9999999999999999974 568999999999875321 123568899877888999999999999
Q ss_pred HHHHhcCCcEEEEEe
Q 017404 234 NEFQKGHSHMAVVVR 248 (372)
Q Consensus 234 ~~M~~~~~~~a~VVD 248 (372)
+.|.+++.+.+||+|
T Consensus 82 ~~~~~~~~~~~~Vv~ 96 (113)
T cd04607 82 ALMRERSIRHLPILD 96 (113)
T ss_pred HHHHHCCCCEEEEEC
Confidence 999999999999998
No 53
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=6.7e-12 Score=102.07 Aligned_cols=90 Identities=22% Similarity=0.332 Sum_probs=78.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC--CCcccccccccCCceecCCCCHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEIL 233 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~~aL 233 (372)
++.+++.+.++. ++.+.|.+.+++++||+++ ++++|+++.+|++..... ...++.++|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 566889999998 9999999999999999985 789999999999864322 34678899888899999999999999
Q ss_pred HHHHhcCCcEEEEEe
Q 017404 234 NEFQKGHSHMAVVVR 248 (372)
Q Consensus 234 ~~M~~~~~~~a~VVD 248 (372)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~V~~ 94 (110)
T cd04595 80 ELMVEHDIGRVPVVE 94 (110)
T ss_pred HHHHHcCCCeeEEEe
Confidence 999999999999998
No 54
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=5.1e-12 Score=104.51 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=78.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC-------------CCCcccccccccCCce
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-------------EDEVPVKSVTIRRIPR 222 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~-------------~~~~~V~dim~r~v~~ 222 (372)
++.+++++.++. ++.+.|.+++++++||++ +.++++|+++.+|++.... ....++.++|.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQ-KAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEEC-CCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 456899999998 999999999999999997 4579999999999986311 0234677888788899
Q ss_pred ecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 223 VPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 223 V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++++.++++.|.+.+.+.+||+|
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd 105 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVN 105 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence 99999999999999999999999998
No 55
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.36 E-value=7.4e-12 Score=101.84 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=78.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccC-C---CCCcccccccccCCceecCCCCHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-P---EDEVPVKSVTIRRIPRVPETLPLYE 231 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~-~---~~~~~V~dim~r~v~~V~~~~~l~~ 231 (372)
++.+++.+.++. ++.+.|.+++++++||+++ ++++|+++.+|++... . ....++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 466889999998 9999999999999999984 7999999999988521 1 1235688888889999999999999
Q ss_pred HHHHHHhcCCcEEEEEe
Q 017404 232 ILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 232 aL~~M~~~~~~~a~VVD 248 (372)
+++.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04800 79 ALLLMLERGIHHLPVVD 95 (111)
T ss_pred HHHHHHHcCCCeeeEeE
Confidence 99999999999999998
No 56
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=9.1e-12 Score=100.48 Aligned_cols=88 Identities=15% Similarity=0.311 Sum_probs=77.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 235 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 235 (372)
++.+++.+.++. ++.+.|.+.+++++||+++ ++++|+++.+|++... ...+++++|..++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 567899999998 9999999888999999984 7899999999998642 2356889988888899999999999999
Q ss_pred HHhcCCcEEEEEe
Q 017404 236 FQKGHSHMAVVVR 248 (372)
Q Consensus 236 M~~~~~~~a~VVD 248 (372)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vv~ 90 (107)
T cd04610 78 MFRTGISKLPVVD 90 (107)
T ss_pred HHHhCCCeEeEEC
Confidence 9999999999998
No 57
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.36 E-value=1e-11 Score=100.55 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=75.3
Q ss_pred EEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHHHHh
Q 017404 159 AIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQK 238 (372)
Q Consensus 159 tV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~M~~ 238 (372)
++++++++. ++++.+.+.+++++||+++ ++++|+++.+|+..... .++.++|..++.+++++.++.++++.|.+
T Consensus 5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~~ 78 (104)
T cd04594 5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMMK 78 (104)
T ss_pred EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHHH
Confidence 688999998 9999999999999999984 78999999999986432 34778888888999999999999999999
Q ss_pred cCCcEEEEEe
Q 017404 239 GHSHMAVVVR 248 (372)
Q Consensus 239 ~~~~~a~VVD 248 (372)
++.+.+||+|
T Consensus 79 ~~~~~~~Vv~ 88 (104)
T cd04594 79 NKTRWCPVVD 88 (104)
T ss_pred cCcceEEEEE
Confidence 9999999998
No 58
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=6.4e-12 Score=106.13 Aligned_cols=91 Identities=15% Similarity=0.264 Sum_probs=77.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCC----C--------------------cc
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED----E--------------------VP 211 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~----~--------------------~~ 211 (372)
++.++++++++. ++.+.+.+.+++++||+++ .++++|+++.+|+++..... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456789999998 9999999999999999984 56899999999998643211 1 16
Q ss_pred cccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 212 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 212 V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+.++|.++++++++++++.++++.|.+.+.+.+||+|
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 116 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD 116 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE
Confidence 7888888889999999999999999999999999998
No 59
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.36 E-value=7.3e-12 Score=101.38 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=76.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecC-CCCHHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPE-TLPLYEILN 234 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~-~~~l~~aL~ 234 (372)
++.+++.+.++. ++.+.|.+++++++||+++ .++++|+++.+|++.... .+.++.++|..++.++.+ ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 456789999998 9999999999999999984 479999999999975432 346788987666666666 999999999
Q ss_pred HHHhcCCcEEEEEe
Q 017404 235 EFQKGHSHMAVVVR 248 (372)
Q Consensus 235 ~M~~~~~~~a~VVD 248 (372)
.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~Vv~ 93 (110)
T cd04601 80 LLHEHKIEKLPVVD 93 (110)
T ss_pred HHHHhCCCeeeEEc
Confidence 99999999999998
No 60
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=4.7e-12 Score=103.35 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=78.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC------CCCcccccccccCCceecCCCCH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP------EDEVPVKSVTIRRIPRVPETLPL 229 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~------~~~~~V~dim~r~v~~V~~~~~l 229 (372)
++.+++++.++. ++.+.|.+++++++||+++ .++++|+++.+|+++... ....++.++|.++++++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 456789999998 9999999999999999974 568999999999986321 12457888887888899999999
Q ss_pred HHHHHHHHhcCCcEEEEEe
Q 017404 230 YEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 230 ~~aL~~M~~~~~~~a~VVD 248 (372)
.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~ 98 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVD 98 (114)
T ss_pred HHHHHHHHHhCCCccCEEE
Confidence 9999999999999999998
No 61
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.35 E-value=8.3e-12 Score=102.59 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=78.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC--------------CCcccccccccCCc
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 221 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~--------------~~~~V~dim~r~v~ 221 (372)
++.+++++.++. ++.+.|.+.++..+||+++ ++++|+++.+|++..... ...++.++|.++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456789999998 9999999999999999984 799999999999875422 12457788878899
Q ss_pred eecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 222 RVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 222 ~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++++++++.++++.|.+.+.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVD 105 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEEC
Confidence 999999999999999999999999998
No 62
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=4.7e-12 Score=107.35 Aligned_cols=91 Identities=22% Similarity=0.318 Sum_probs=78.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC--------------------------CCC
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP--------------------------EDE 209 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~--------------------------~~~ 209 (372)
++.++++++++. ++.+.|.++++.++||++ +.++++|+++.+|+++... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd-~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVD-DDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEEC-CCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 567899999998 999999999999999998 4578999999999976321 123
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 210 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 210 ~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
.++.++|.++++++++++++.++++.|.+.+.+.+||+|
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd 119 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR 119 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence 568888878889999999999999999999999999998
No 63
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=1.1e-11 Score=99.85 Aligned_cols=78 Identities=9% Similarity=0.168 Sum_probs=69.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 235 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 235 (372)
++.+++++.++. ++++.|.+.+++.+||+++ .++++|+++.+|++... .+.++++++++.++++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDD-DGKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence 466899999998 9999999999999999974 56899999999998632 17789999999999999
Q ss_pred HHhcCCcEEEEEe
Q 017404 236 FQKGHSHMAVVVR 248 (372)
Q Consensus 236 M~~~~~~~a~VVD 248 (372)
|.+++.+.+||+|
T Consensus 67 m~~~~~~~lpVv~ 79 (96)
T cd04614 67 MKRNRIEQIPIIN 79 (96)
T ss_pred HHHhCCCeeeEEC
Confidence 9999999999998
No 64
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.35 E-value=1.3e-11 Score=128.04 Aligned_cols=109 Identities=14% Similarity=0.195 Sum_probs=90.7
Q ss_pred HHHHHHHHhhcccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCC--CCcEEEEEehhhHhccCCCC
Q 017404 131 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPED 208 (372)
Q Consensus 131 ~E~~~i~~vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~--~d~iVGIVs~kDLl~~~~~~ 208 (372)
+.+..++.+.+++ ..|++ +++++++++|+. ++++.|.+++++.+||++++ .++++|+|+.+|+.... ..
T Consensus 91 ~q~~~Irkvk~~~-----~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~ 161 (505)
T PLN02274 91 EQAAIVRKAKSRR-----VGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DR 161 (505)
T ss_pred HHHHHHHHhhccc-----ccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-cc
Confidence 3456677777542 22664 678999999998 99999999999999999853 36899999999997543 34
Q ss_pred CcccccccccC--CceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 209 EVPVKSVTIRR--IPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 209 ~~~V~dim~r~--v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+.++.++|.++ ++++++++++.+|++.|.+++.+.+||+|
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD 203 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN 203 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 57899998766 77999999999999999999999999998
No 65
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.34 E-value=3e-12 Score=107.85 Aligned_cols=89 Identities=20% Similarity=0.309 Sum_probs=73.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccC----CCCCcccccccccCCceecCCCCHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTIRRIPRVPETLPLYE 231 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~----~~~~~~V~dim~r~v~~V~~~~~l~~ 231 (372)
++.+++++.++. ++++.|.+++++.+||+++ .++++|+++.+|++... .....++.++|.++++++.+++++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 567899999998 9999999999999999984 46899999999998521 22357899999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEe
Q 017404 232 ILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 232 aL~~M~~~~~~~a~VVD 248 (372)
+.+.|... +.+.++.
T Consensus 81 v~~~~~~~--~~~~~~~ 95 (124)
T cd04608 81 LSRILETD--AFLLVFF 95 (124)
T ss_pred HHhhcccC--CceEEEe
Confidence 99987643 3444443
No 66
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.34 E-value=1e-11 Score=102.14 Aligned_cols=91 Identities=15% Similarity=0.270 Sum_probs=76.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCC--CCcEEEEEehhhHhccCCCCCcccccccccCCceecC--CCCHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPE--TLPLYE 231 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~--~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~--~~~l~~ 231 (372)
++.++++++++. ++++.|.+++++.+||+++. .++++|+++.+|++.... ...+++++|.++...+.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 456789999998 99999999999999999842 478999999999975432 235688998777777755 999999
Q ss_pred HHHHHHhcCCcEEEEEe
Q 017404 232 ILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 232 aL~~M~~~~~~~a~VVD 248 (372)
+++.|++++.+.+||+|
T Consensus 81 ~l~~~~~~~~~~~pVv~ 97 (114)
T cd04602 81 ANEILRESKKGKLPIVN 97 (114)
T ss_pred HHHHHHhcCCCceeEEC
Confidence 99999999999999998
No 67
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=9.7e-12 Score=104.19 Aligned_cols=91 Identities=14% Similarity=0.287 Sum_probs=77.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC-----------------CCCccccccccc
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----------------EDEVPVKSVTIR 218 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~-----------------~~~~~V~dim~r 218 (372)
++.++++++++. ++++.|.+.+++.+||+++ .++++|+++.+|+..... ....++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDD-NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECC-CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 456789999998 9999999999999999984 468999999999875321 012467888888
Q ss_pred CCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 219 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 219 ~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++++++++.++++.|.+.+.+.+||++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 899999999999999999999999998885
No 68
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.34 E-value=8.5e-12 Score=101.95 Aligned_cols=85 Identities=18% Similarity=0.190 Sum_probs=74.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCC--CCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEIL 233 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~--~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL 233 (372)
....++++.++. ++.+.+.+++++++||+++. .++++|+|+.+|+.....+ +|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~~ 74 (105)
T cd04591 3 LVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKVH 74 (105)
T ss_pred ceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHHH
Confidence 567889999998 99999999999999999852 4689999999999875421 6778888999999999999
Q ss_pred HHHHhcCCcEEEEEe
Q 017404 234 NEFQKGHSHMAVVVR 248 (372)
Q Consensus 234 ~~M~~~~~~~a~VVD 248 (372)
+.|++++.+.+||++
T Consensus 75 ~~~~~~~~~~~pVv~ 89 (105)
T cd04591 75 QLFRKLGLRHLLVVD 89 (105)
T ss_pred HHHHHcCCCEEEEEE
Confidence 999999999999997
No 69
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=1.3e-11 Score=100.76 Aligned_cols=90 Identities=11% Similarity=0.178 Sum_probs=77.6
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC-C---CCcccccccccCCceecCCCCHHHH
Q 017404 157 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-E---DEVPVKSVTIRRIPRVPETLPLYEI 232 (372)
Q Consensus 157 vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~-~---~~~~V~dim~r~v~~V~~~~~l~~a 232 (372)
..++++++++. ++++.|.+++++++||+++ .++++|+++.+|+++... . ...++.++|.+++.++++++++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence 35789999998 9999999999999999984 568999999999986321 1 2357888888889999999999999
Q ss_pred HHHHHhcCCcEEEEEe
Q 017404 233 LNEFQKGHSHMAVVVR 248 (372)
Q Consensus 233 L~~M~~~~~~~a~VVD 248 (372)
++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~Vvd 96 (113)
T cd04615 81 RWLMSNNNISRLPVLD 96 (113)
T ss_pred HHHHHHcCCCeeeEEC
Confidence 9999999999999998
No 70
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.33 E-value=1e-11 Score=101.15 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=76.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccC-C---CC-CcccccccccCCceecCCCCHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-P---ED-EVPVKSVTIRRIPRVPETLPLY 230 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~-~---~~-~~~V~dim~r~v~~V~~~~~l~ 230 (372)
++.+++++.++. ++.+.|.+++.+++||+++ ++++|+++.+|++... . .. ..++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 456789999998 9999999999999999984 7999999999987421 1 11 2568888888888999999999
Q ss_pred HHHHHHHhcCCcEEEEEe
Q 017404 231 EILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 231 ~aL~~M~~~~~~~a~VVD 248 (372)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~l~Vv~ 96 (113)
T cd04587 79 EALHLMVQGKFRHLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCcccEEC
Confidence 999999999999999998
No 71
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=9.6e-12 Score=101.28 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=73.1
Q ss_pred EeCCCChHHHHHHHHHHcC-----CceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHH
Q 017404 160 IDINAKLDKELMNLILEKG-----HSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILN 234 (372)
Q Consensus 160 V~~d~tv~~ea~~~m~~~~-----~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~ 234 (372)
+++++++. ++++.|.+++ +..+||+++ +++++|+++.+|++... .+.++.++|..++..+++++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 56788998 9999998877 467899974 57899999999998743 245788988778889999999999999
Q ss_pred HHHhcCCcEEEEEe
Q 017404 235 EFQKGHSHMAVVVR 248 (372)
Q Consensus 235 ~M~~~~~~~a~VVD 248 (372)
.|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~~Vv~ 91 (109)
T cd04606 78 LFEKYDLLALPVVD 91 (109)
T ss_pred HHHHcCCceeeeEC
Confidence 99999999999998
No 72
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1.1e-11 Score=101.52 Aligned_cols=90 Identities=13% Similarity=0.327 Sum_probs=74.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcC-CceeeEeeCCCCcEEEEEehhhHhccCCC----CCcccccccccCCceecCC--CC
Q 017404 156 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPET--LP 228 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~-~sriPV~d~~~d~iVGIVs~kDLl~~~~~----~~~~V~dim~r~v~~V~~~--~~ 228 (372)
++.+++++.++. ++++.|.+++ ...+||.+ .++++|+++.+|+++.... ...++.++|.+++++++++ ++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVE--KGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcC--CCcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 345789999998 9999998888 66778776 3689999999999864322 1356888888888889887 78
Q ss_pred HHHHHHHHHhcCCcEEEEEe
Q 017404 229 LYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 229 l~~aL~~M~~~~~~~a~VVD 248 (372)
+.++++.|.+++.+.+||+|
T Consensus 79 l~~a~~~~~~~~~~~~pVvd 98 (115)
T cd04620 79 IFTALSLFRQHQIRHLPVLD 98 (115)
T ss_pred HHHHHHHHHHhCCceEEEEc
Confidence 99999999999999999998
No 73
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.32 E-value=1.3e-11 Score=100.56 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=77.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC----CCcccccccccCCceecCCCCHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 231 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~~ 231 (372)
++.+++++.++. ++.+.+.+.+++++||+++ .++++|+++.+++++.... ...++.++|.+++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 345688999998 9999999889999999984 4689999999998764322 124688998888899999999999
Q ss_pred HHHHHHhcCCcEEEEEe
Q 017404 232 ILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 232 aL~~M~~~~~~~a~VVD 248 (372)
+++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~Vv~ 97 (114)
T cd04604 81 ALELMEENKITALPVVD 97 (114)
T ss_pred HHHHHHHcCCCEEEEEC
Confidence 99999999999999998
No 74
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=2.2e-11 Score=99.21 Aligned_cols=90 Identities=21% Similarity=0.243 Sum_probs=77.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC-----CCCcccccccccCCceecCCCCHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----EDEVPVKSVTIRRIPRVPETLPLY 230 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~-----~~~~~V~dim~r~v~~V~~~~~l~ 230 (372)
++.++++++++. ++++.|.+++++.+||+++ ++++|+++.+|++.... ....++.++|.++++++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 456789999998 9999999999999999984 38999999999986321 123568888878888999999999
Q ss_pred HHHHHHHhcCCcEEEEEe
Q 017404 231 EILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 231 ~aL~~M~~~~~~~a~VVD 248 (372)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~Vv~ 96 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVD 96 (112)
T ss_pred HHHHHHHHcCCCeeEEee
Confidence 999999999999999998
No 75
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.32 E-value=8.9e-12 Score=129.06 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhcccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCC--CCcEEEEEehhhHhccCCC
Q 017404 130 HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPE 207 (372)
Q Consensus 130 ~~E~~~i~~vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~--~d~iVGIVs~kDLl~~~~~ 207 (372)
+++++++.++-++.. ..++.| .++++++|+. ++++.|.+++++.+||++++ .++++|+|+.+|+......
T Consensus 87 e~qa~lV~kVk~~~~---g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~ 158 (502)
T PRK07107 87 ESEAAMVRRVKNYKA---GFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS 158 (502)
T ss_pred HHHHHHHHHHHHHhc---CCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence 455555555544332 222222 4789999998 99999999999999999852 4799999999999754333
Q ss_pred CCccccccccc--CCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 208 DEVPVKSVTIR--RIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 208 ~~~~V~dim~r--~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
.+.+++++|.+ +++++++++++.+|++.|.+++...+||+|
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD 201 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD 201 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 45689999875 678899999999999999999999999999
No 76
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=9.9e-12 Score=102.96 Aligned_cols=90 Identities=13% Similarity=0.206 Sum_probs=77.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC--------------CCcccccccccCCc
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 221 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~--------------~~~~V~dim~r~v~ 221 (372)
++.++++++++. ++.+.|.+++++++||+++ ++++|+++.+|+.+.... ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 567899999998 9999999999999999984 689999999999763211 12457888888899
Q ss_pred eecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 222 RVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 222 ~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++++++++.++++.|.+++...+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~ 105 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVD 105 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEEC
Confidence 999999999999999999999999998
No 77
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=3.2e-11 Score=98.18 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=76.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc-cCCC----CCcccccccccCCceecCCCCHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT-IHPE----DEVPVKSVTIRRIPRVPETLPLY 230 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~-~~~~----~~~~V~dim~r~v~~V~~~~~l~ 230 (372)
++.++++++++. ++.+.|.+++++.+||+++ ++++|+++.+|++. .... ...++.++|.+.+.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 456889999998 9999999999999999984 79999999999863 1111 12348889888899999999999
Q ss_pred HHHHHHHhcCCcEEEEEe
Q 017404 231 EILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 231 ~aL~~M~~~~~~~a~VVD 248 (372)
++++.|...+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~V~~ 96 (113)
T cd04622 79 EAARLMREHQVRRLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCeeeEEC
Confidence 999999999999999998
No 78
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=4e-11 Score=96.97 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=77.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 235 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 235 (372)
+++++.++.++. ++.+.+.+.+++++||++++ ++++|+++.++++.... ..++.++|.+++.++++++++.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 467889999998 99999999999999999854 78999999999986432 345778888888999999999999999
Q ss_pred HHhcCCcEEEEEe
Q 017404 236 FQKGHSHMAVVVR 248 (372)
Q Consensus 236 M~~~~~~~a~VVD 248 (372)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vvd 90 (106)
T cd04638 78 MVENNIRRVPVVD 90 (106)
T ss_pred HHHcCCCEEEEEE
Confidence 9999999999998
No 79
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.30 E-value=2.1e-11 Score=100.54 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=78.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC-------------CCCcccccccccCCce
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-------------EDEVPVKSVTIRRIPR 222 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~-------------~~~~~V~dim~r~v~~ 222 (372)
++.++++++++. ++.+.+.+.+++++||+++ .++++|+++.+|+..... ....++.++|.+++++
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 456789999998 9999999999999999985 479999999999876321 1235688888888899
Q ss_pred ecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 223 VPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 223 V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~ 105 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVE 105 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999998
No 80
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=1.9e-11 Score=100.98 Aligned_cols=90 Identities=14% Similarity=0.283 Sum_probs=77.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC--------------CCcccccccccCCc
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 221 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~--------------~~~~V~dim~r~v~ 221 (372)
++.++++++++. ++.+.|.+++++++||+++ ++++|+++.+|++..... ...++.++|.+++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 456789999998 9999999999999999984 799999999999864221 13467788878899
Q ss_pred eecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 222 RVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 222 ~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++++++++.++++.|.+.+.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVD 105 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEE
Confidence 999999999999999999999999999
No 81
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.29 E-value=1.9e-11 Score=125.06 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=85.9
Q ss_pred HHHhhcccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC----CCcc
Q 017404 136 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVP 211 (372)
Q Consensus 136 i~~vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~----~~~~ 211 (372)
+.+. +...+|+++|.+ ++.++++++++. ++++.|.+++++.+||+++ +++++|+|+.+|+++.... ...+
T Consensus 328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~ 401 (454)
T TIGR01137 328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKANPDDA 401 (454)
T ss_pred HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCCCcCCC
Confidence 4444 688999999986 678999999998 9999999999999999984 4689999999999863221 2357
Q ss_pred cccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 212 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 212 V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+.++|.++++++++++++.++++.|.+++ .++|++
T Consensus 402 v~~im~~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~ 436 (454)
T TIGR01137 402 VSKVMSKKFIQIGEGEKLSDLSKFLEKNS--SAIVTE 436 (454)
T ss_pred HHHhcCCCCeEECCcCcHHHHHHHHHHCC--eeEEEE
Confidence 88998888889999999999999998764 344443
No 82
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.29 E-value=2.7e-11 Score=125.45 Aligned_cols=136 Identities=10% Similarity=0.199 Sum_probs=100.0
Q ss_pred ccCHHHHHHHHHhcccccCCCCCCCH-HHHHHHHHhhcccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceee
Q 017404 105 LFRRAELKTLVNLHGNEAGKGGELTH-DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVP 183 (372)
Q Consensus 105 ~~s~eEL~~ll~~~~~e~~e~G~l~~-~E~~~i~~vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriP 183 (372)
.+|+.++-..+...+.-+-=.+.++. +..+.++++.+ +++.|++ +++++++++|+. ++.+.|.+++++.+|
T Consensus 60 ~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~v~kvk~-----~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vp 131 (495)
T PTZ00314 60 TVTEHKMAIAMALMGGIGVIHNNCSIEEQVEEVRKVKR-----FENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSIL 131 (495)
T ss_pred ccccHHHHHHHHHCCCeEEecCCCCHHHHHHHHhhccc-----ccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEE
Confidence 45666666555421110000011222 34555665554 4456664 567899999998 999999999999999
Q ss_pred EeeCC--CCcEEEEEehhhHhccCCCCCccccccccc--CCceecCCCCHHHHHHHHHhcCCcEEEEEec
Q 017404 184 VYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIR--RIPRVPETLPLYEILNEFQKGHSHMAVVVRQ 249 (372)
Q Consensus 184 V~d~~--~d~iVGIVs~kDLl~~~~~~~~~V~dim~r--~v~~V~~~~~l~~aL~~M~~~~~~~a~VVDE 249 (372)
|++++ .++++|+|+.+|+.... ....+++++|.+ +++++++++++.++++.|.+++.+.+||+|+
T Consensus 132 Vvd~~~~~gkLvGIVt~~DL~~~~-~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~ 200 (495)
T PTZ00314 132 ITVDGKVGGKLLGIVTSRDIDFVK-DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND 200 (495)
T ss_pred EEeCCccCCeEEEEEEHHHHhhcc-cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC
Confidence 99853 36899999999997543 335689999876 7889999999999999999999999999993
No 83
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.28 E-value=3.5e-11 Score=97.18 Aligned_cols=88 Identities=24% Similarity=0.389 Sum_probs=73.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCC----CcccccccccCCceecCCCCHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED----EVPVKSVTIRRIPRVPETLPLYE 231 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~----~~~V~dim~r~v~~V~~~~~l~~ 231 (372)
++.+++.++++. ++.+.|.+++++++||+++ ++++|+++.+|+.+..... ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 356789999998 9999999999999999984 7899999999998753221 25688888788889999999999
Q ss_pred HHHHHHhcCCcEEEEEe
Q 017404 232 ILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 232 aL~~M~~~~~~~a~VVD 248 (372)
+++.|.+ .. .+||+|
T Consensus 79 ~~~~~~~-~~-~~~vv~ 93 (110)
T cd04609 79 LSELLDR-GN-VAVVVD 93 (110)
T ss_pred HHHHHHh-CC-ceeEEe
Confidence 9999988 33 478888
No 84
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=3.9e-11 Score=97.72 Aligned_cols=90 Identities=12% Similarity=0.177 Sum_probs=76.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC-----CCcccccccccCCceecCCCCHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSVTIRRIPRVPETLPLY 230 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~-----~~~~V~dim~r~v~~V~~~~~l~ 230 (372)
++.++++++++. ++.+.|.+++++.++|.+ + ++++|+++.+|+++.... ...++.++|..++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 456889999998 999999888888888775 3 689999999999864221 23568899877788999999999
Q ss_pred HHHHHHHhcCCcEEEEEe
Q 017404 231 EILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 231 ~aL~~M~~~~~~~a~VVD 248 (372)
++++.|.+++...+||+|
T Consensus 79 ~a~~~m~~~~~~~l~Vv~ 96 (112)
T cd04625 79 EVRRLMVERHLRYLPVLD 96 (112)
T ss_pred HHHHHHHHcCCCeeeEEE
Confidence 999999999999999998
No 85
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.27 E-value=3.4e-11 Score=123.95 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=87.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCce
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 222 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~ 222 (372)
...++.++|.+ +++++++++++. ++++.|.+++++.+||+++ ++++|+|+.+|+.... ...+++++|.+++++
T Consensus 86 ~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~--~~~~V~dIMt~~lit 158 (475)
T TIGR01303 86 AFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVD--RFTQVRDIMSTDLVT 158 (475)
T ss_pred hhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCC--CCCCHHHHccCCceE
Confidence 35568889985 667999999998 9999999999999999873 5899999999997543 246799999999999
Q ss_pred ecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 223 VPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 223 V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++++.+|++.|.+++.+.+||+|
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD 184 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVD 184 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 99999999999999999999999998
No 86
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=3.7e-11 Score=98.89 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=74.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcC-CceeeEeeCCCCcEEEEEehhhHhccCCC-------CCcccccccccCCceecCCC
Q 017404 156 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE-------DEVPVKSVTIRRIPRVPETL 227 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~-~sriPV~d~~~d~iVGIVs~kDLl~~~~~-------~~~~V~dim~r~v~~V~~~~ 227 (372)
++.++++++++. ++++.+...+ ++++||+++ ++++|+++.+|++..... ...++.++|..+++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 345788999998 9999998877 899999985 799999999999864321 24578899888888999999
Q ss_pred CHHHHHHHHHhcCCc---EEEEEe
Q 017404 228 PLYEILNEFQKGHSH---MAVVVR 248 (372)
Q Consensus 228 ~l~~aL~~M~~~~~~---~a~VVD 248 (372)
++.+++..|.+++.+ ..+|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vv~ 102 (119)
T cd04598 79 PLEEVSRLATGRDSQNLYDGFIVT 102 (119)
T ss_pred CHHHHHHHHHcCCcccccccEEEe
Confidence 999999999988753 346777
No 87
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.23 E-value=1.1e-10 Score=93.38 Aligned_cols=91 Identities=23% Similarity=0.326 Sum_probs=77.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCC----cccccccccCCceecCCCCHHH
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE----VPVKSVTIRRIPRVPETLPLYE 231 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~----~~V~dim~r~v~~V~~~~~l~~ 231 (372)
++.+++.+.++. ++.+.+.+++++++||+++ .++++|+++.+|+........ ..+.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECC-CCCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 456789999998 9999999999999999985 469999999999987543211 1156777888999999999999
Q ss_pred HHHHHHhcCCcEEEEEe
Q 017404 232 ILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 232 aL~~M~~~~~~~a~VVD 248 (372)
+++.|.+.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~V~~ 96 (113)
T cd02205 80 AAELMLEHGIRRLPVVD 96 (113)
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 99999999999999998
No 88
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=7.9e-11 Score=101.42 Aligned_cols=90 Identities=11% Similarity=0.250 Sum_probs=77.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC----------------------------
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------------------------- 207 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~---------------------------- 207 (372)
+++++++++++. ++.+.|.+.+++.+||+++ ++++|+++.+|++.....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 467899999998 9999999999999999984 789999999999764211
Q ss_pred --------CCcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 208 --------DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 208 --------~~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
...++.++|.++++++++++++.++++.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~ 127 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE 127 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 12457778888899999999999999999999999999998
No 89
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.22 E-value=1.4e-10 Score=94.83 Aligned_cols=95 Identities=25% Similarity=0.390 Sum_probs=82.2
Q ss_pred cccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCC--c-ccccccccCCceecC
Q 017404 149 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--V-PVKSVTIRRIPRVPE 225 (372)
Q Consensus 149 dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~--~-~V~dim~r~v~~V~~ 225 (372)
++|. .+++++.++.++. ++...|.+++++++||.++ ++++|+++.+|+++...... . ++.++|.+++.++.+
T Consensus 3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~ 77 (117)
T COG0517 3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDP 77 (117)
T ss_pred cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECC
Confidence 4454 4778999999998 9999999999999999973 26999999999998654322 2 588998889999999
Q ss_pred CCCHHHHHHHHHh-cCCcEEEEEe
Q 017404 226 TLPLYEILNEFQK-GHSHMAVVVR 248 (372)
Q Consensus 226 ~~~l~~aL~~M~~-~~~~~a~VVD 248 (372)
+.++.++++.|.+ ++.+.+||+|
T Consensus 78 ~~~~~~~~~~m~~~~~~~~lpVv~ 101 (117)
T COG0517 78 DTPLEEALELMVERHKIRRLPVVD 101 (117)
T ss_pred CCCHHHHHHHHHHHcCcCeEEEEE
Confidence 9999999999999 7999999999
No 90
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.21 E-value=6.1e-11 Score=112.83 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=88.3
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC---CCCcccccccccCCc
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRIP 221 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~---~~~~~V~dim~r~v~ 221 (372)
.+|+++|.+. ++.++++++++. ++++.|.+.+++.+||+++ .++++|+++.+|+.+... ....+++++|.++++
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999863 277899999998 9999999999999999984 468999999999987432 134679999988999
Q ss_pred eecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 222 RVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 222 ~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++++++++.+|++.|.+++.+.+||+|
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd 258 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVD 258 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEEC
Confidence 999999999999999999999999998
No 91
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.11 E-value=2e-10 Score=117.31 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=91.5
Q ss_pred hhcccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhcc----CCCCCccccc
Q 017404 139 ALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI----HPEDEVPVKS 214 (372)
Q Consensus 139 vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~----~~~~~~~V~d 214 (372)
.-++--.+|+++|+. +.+++++.+++. ++.+.|.++|.+.+-|++ +.+...|||+.+|+... ......+|++
T Consensus 143 ~~e~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~-~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~e 218 (610)
T COG2905 143 ESEFILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLD-DSGPLLGIVTRKDLRSRVIADGRSKTQKVSE 218 (610)
T ss_pred cchHHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEc-CCCCccceeehHHHHHHHHhcCCCcccchhh
Confidence 334455678999985 667999999998 999999999999888887 45689999999999863 2223578999
Q ss_pred ccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 215 VTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 215 im~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+|+.|+.+|..++.+.+|+-.|.+++++.+||.+
T Consensus 219 vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e 252 (610)
T COG2905 219 VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE 252 (610)
T ss_pred hhccCceeecCcchHHHHHHHHHHhCCceeeeec
Confidence 9999999999999999999999999999999986
No 92
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.02 E-value=1.1e-09 Score=93.98 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=78.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCc---c------------ccccc----
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV---P------------VKSVT---- 216 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~---~------------V~dim---- 216 (372)
++.++++++++. ++++.|.+++++.+||+++ .++++|+|+.+|+++....... . +.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 567899999998 9999999999999999984 5689999999999874322111 1 23354
Q ss_pred -----ccCCceecCCCCHHHHHHHHHhcCCcEEEEEecCCCC
Q 017404 217 -----IRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKN 253 (372)
Q Consensus 217 -----~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVDEyG~~ 253 (372)
.++++++++++++.+|++.|.+++.+.+||+|+.++.
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~~ 121 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVDR 121 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcCc
Confidence 3678899999999999999999999999999966554
No 93
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.96 E-value=2.4e-09 Score=112.35 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=49.9
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
..+|+++|++ ++.++++++++. ++++.|.+++++++||+++ +++++|+|+.+|+.+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~g~l~Givt~~di~~ 122 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDE-EGKLLGLVSLSDLAR 122 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHH
Confidence 3689999985 678999999998 9999999999999999984 568999999999865
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.76 E-value=2.1e-08 Score=72.64 Aligned_cols=37 Identities=22% Similarity=0.080 Sum_probs=34.9
Q ss_pred cccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 212 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 212 V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
|+++|.++++++++++++.++++.|++++.+.+||+|
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d 37 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD 37 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence 4678888999999999999999999999999999998
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.62 E-value=6.2e-08 Score=70.14 Aligned_cols=54 Identities=30% Similarity=0.547 Sum_probs=49.2
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhcc
Q 017404 147 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 204 (372)
Q Consensus 147 V~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~ 204 (372)
|+++|++ +++++++++++. ++.+.|.+++++++||+|+ .++++|+++.+|++++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhh
Confidence 5789997 788999999998 9999999999999999984 4799999999999874
No 96
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.48 E-value=1e-06 Score=88.73 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=73.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCC-----cc-ccccc------ccCCcee
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-----VP-VKSVT------IRRIPRV 223 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~-----~~-V~dim------~r~v~~V 223 (372)
++..+..+.++. ++++.|...+++.+||++. .++.+|+++..|+......+. .. +++.- ..+++++
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588899999998 9999999999999999985 456799999999986433221 11 22221 2346789
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 224 PETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 224 ~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
.++.++.+++..|..+++|.+.|||
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd 340 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVD 340 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEc
Confidence 9999999999999999999999999
No 97
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.8e-06 Score=87.57 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=78.0
Q ss_pred cccccccccCcc-EEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCcee
Q 017404 145 KTASDAMTPIAE-TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRV 223 (372)
Q Consensus 145 ~tV~dIMtpr~~-vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V 223 (372)
.++.++|.+... .+...++.+.. ++++.|...+.+++.|+|+ .++++|+++.+++...... ...+.+.+.....++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIER-GNKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 467788854221 12334566776 8999999999999999984 5699999999999765432 345777767778899
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 224 PETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 224 ~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++++++.+++..|...... +||+|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~ 374 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVD 374 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEEC
Confidence 9999999999999997766 88998
No 98
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.36 E-value=1.1e-06 Score=87.10 Aligned_cols=135 Identities=14% Similarity=0.197 Sum_probs=104.7
Q ss_pred ccCHHHHHHHHHhccccc--CCCCCCCHHHHHHHHHhhcccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcee
Q 017404 105 LFRRAELKTLVNLHGNEA--GKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRV 182 (372)
Q Consensus 105 ~~s~eEL~~ll~~~~~e~--~e~G~l~~~E~~~i~~vl~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sri 182 (372)
.+++.|....+.+++.-+ |..-. .++++.+++++-.|.. .-++ +.+.++++.++. ++++.-.+++|+.+
T Consensus 72 TVtes~MAiaMAl~ggIg~IHhNct-pe~QA~~v~~vK~~~~---g~~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~ 142 (503)
T KOG2550|consen 72 TVTESEMAIAMALLGGIGFIHHNCT-PEDQADMVRRVKNYEN---GFIN----NPIVISPTTTVG-EVKEAKEKHGFSGI 142 (503)
T ss_pred ccchhHHHHHHHhcCCceeeecCCC-HHHHHHHHHHHHHhhc---cccc----CCcccCCcccch-hhhhhccccccccc
Confidence 467888877766542210 11111 4567888888887775 3333 345689999997 99999999999999
Q ss_pred eEeeCC--CCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEec
Q 017404 183 PVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQ 249 (372)
Q Consensus 183 PV~d~~--~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVDE 249 (372)
||.++. ..+++|+|+.+|+-.. .+..+.+.++|+...++.|...++.++-+.+++.+...+||+|+
T Consensus 143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~ 210 (503)
T KOG2550|consen 143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD 210 (503)
T ss_pred ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc
Confidence 999632 3689999999999765 55578899999888899999999999999999999999999993
No 99
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.29 E-value=8.1e-06 Score=81.80 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=71.7
Q ss_pred EEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCceecCCCCHHHHHHHHHh
Q 017404 159 AIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQK 238 (372)
Q Consensus 159 tV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~M~~ 238 (372)
...++.+.. ++++.+...+.....|+++ .+++.|+++.+++...... ...+.+.|....+++++++++.+++..|.+
T Consensus 254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (363)
T TIGR01186 254 TKTADKGPR-SALQLMRDERVDSLYVVDR-QNKLVGVVDVESIKQARKK-AQGLQDVLIDDIYTVDAGTLLRETVRKVLK 330 (363)
T ss_pred eecCCCCHH-HHHHHHHhcCCceEEEEcC-CCCEEEEEeHHHHHHHhhc-CCchhhhhccCCceECCCCcHHHHHHHHHh
Confidence 455677787 8999999999989999984 5689999999999865433 235777777778899999999999999999
Q ss_pred cCCcEEEEEe
Q 017404 239 GHSHMAVVVR 248 (372)
Q Consensus 239 ~~~~~a~VVD 248 (372)
.+.. +||+|
T Consensus 331 ~~~~-~~v~~ 339 (363)
T TIGR01186 331 AGIK-VPVVD 339 (363)
T ss_pred CCCC-EEEEC
Confidence 9998 99998
No 100
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.18 E-value=2.7e-06 Score=88.28 Aligned_cols=104 Identities=24% Similarity=0.325 Sum_probs=83.3
Q ss_pred ccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCC----CcEEEEEehhhHhccCC------C----
Q 017404 142 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP----TNIIGLILVKNLLTIHP------E---- 207 (372)
Q Consensus 142 l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~----d~iVGIVs~kDLl~~~~------~---- 207 (372)
+.+.+++|+|.+ ++++++.-..+. .+.+.++.+.|..|||+|+.. +++.|+|-...++.... +
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 356679999997 899999999998 999999999999999998543 36788887777653110 0
Q ss_pred ----------------C----------------CcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 208 ----------------D----------------EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 208 ----------------~----------------~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
. -.++..+|...+++|++++++..++..|++-+.+...|++
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~ 728 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP 728 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEec
Confidence 0 0234556666788999999999999999999999999998
No 101
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.96 E-value=4.6e-05 Score=79.42 Aligned_cols=100 Identities=13% Similarity=0.204 Sum_probs=72.6
Q ss_pred ccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCC-
Q 017404 142 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRI- 220 (372)
Q Consensus 142 l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v- 220 (372)
..+.+|+++|++..+++++++++++. ++++.|.+++..++||+|+ .++++|+|+.+|+++...... ...+- ....
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~~~~P~-a~~d~-~grL~ 233 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSHKENPL-ELLDS-SKRYV 233 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhcccChh-hhhhh-ccCee
Confidence 45678999999766888999999998 9999999999999999984 468999999999998543211 11121 1111
Q ss_pred --ceecCCCCHHHHHHHHHhcCCcEEEE
Q 017404 221 --PRVPETLPLYEILNEFQKGHSHMAVV 246 (372)
Q Consensus 221 --~~V~~~~~l~~aL~~M~~~~~~~a~V 246 (372)
..+... ...+-.+.+.+.+.+.+.|
T Consensus 234 V~~av~~~-~~~~ra~~Lv~aGvd~i~v 260 (502)
T PRK07107 234 VGAGINTR-DYAERVPALVEAGADVLCI 260 (502)
T ss_pred eeeccChh-hHHHHHHHHHHhCCCeEee
Confidence 123332 3556677788888877654
No 102
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.89 E-value=6.9e-06 Score=84.50 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=80.3
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCCce
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 222 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v~~ 222 (372)
++.+++++|++ +++++++++++. ++++.|.++++..+||+|+ .|+++|+|+.+|++....+. ...++|.....+
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~ 266 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK 266 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence 56689999986 677899999998 9999999999999999984 56899999999999765432 236776555544
Q ss_pred ecCCCCHHHHHHHHHhcCCcEEEEE
Q 017404 223 VPETLPLYEILNEFQKGHSHMAVVV 247 (372)
Q Consensus 223 V~~~~~l~~aL~~M~~~~~~~a~VV 247 (372)
..++..+.+++..|.+++...++|.
T Consensus 267 ~~~~~~l~~~~~~~~~~R~~wL~v~ 291 (449)
T TIGR00400 267 PLDDSYFDTSILVMAKNRIIWLLVL 291 (449)
T ss_pred CCcchhhhchHHHHHHhccchHHHH
Confidence 4467788999999999999888775
No 103
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.88 E-value=2.5e-05 Score=63.71 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=49.0
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+.++.++|.. ++.++++++++. ++++.|.+++.+++||+++ .++++|+|+.+|+++
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence 3468999974 567899999998 9999999999999999984 468999999999975
No 104
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.88 E-value=2.2e-05 Score=73.99 Aligned_cols=40 Identities=23% Similarity=0.146 Sum_probs=38.3
Q ss_pred CcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 209 EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 209 ~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+.++.++|.+++.++.+++++.++.+.|.+++.+.|||+|
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd 210 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD 210 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec
Confidence 4678999999999999999999999999999999999998
No 105
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.81 E-value=0.00011 Score=76.08 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=72.9
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCC--c
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRI--P 221 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v--~ 221 (372)
..+++++|++ +++++++++++. ++++.|.+++..++||+++ +++++|+|+.+|+++..... +..+.--+.. -
T Consensus 145 ~~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vga 218 (475)
T TIGR01303 145 FTQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATIYT--PATDAAGRLRIGA 218 (475)
T ss_pred CCCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhCC--chhhhccCceehh
Confidence 3579999985 788999999998 9999999999999999984 46899999999999854322 2222100100 1
Q ss_pred eecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 222 RVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 222 ~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
.+.......+.++.|.+.+.+. +|+|
T Consensus 219 av~~~~~~~~ra~~Lv~aGVd~-i~~D 244 (475)
T TIGR01303 219 AVGINGDVGGKAKALLDAGVDV-LVID 244 (475)
T ss_pred eeeeCccHHHHHHHHHHhCCCE-EEEe
Confidence 2444556788999999999877 4667
No 106
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.79 E-value=4.3e-05 Score=62.88 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=50.7
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCC--CcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP--TNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~--d~iVGIVs~kDLl~ 203 (372)
...+++++|+...++.++++++++. ++++.|.+++.+++||+++++ ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 4667888997323577999999998 999999999999999998543 68999999999875
No 107
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.75 E-value=6.8e-05 Score=62.03 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=48.5
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+|+++|.+ ++.++++++++. ++++.|.++++..+||+++ .++++|+|+.+|+..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence 679999986 567899999998 9999999999999999984 468999999999864
No 108
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.74 E-value=7.5e-05 Score=60.31 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=50.4
Q ss_pred cccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 141 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 141 ~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.....++.++|.+ ++.++++++++. ++++.+.+++..++||+++ .++++|+|+.+|+++
T Consensus 55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~ 113 (114)
T cd04604 55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDD-NGRPVGVLHIHDLLR 113 (114)
T ss_pred ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence 3445679999986 456899999998 9999999999999999974 478999999999975
No 109
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.70 E-value=2.4e-05 Score=75.04 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=38.1
Q ss_pred CcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 209 EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 209 ~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
..+..++|.|+++++++++++.+|.+.|++++.+.+||+|
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d 283 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLD 283 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccc
Confidence 4678899999999999999999999999999999999999
No 110
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.69 E-value=6.2e-05 Score=61.22 Aligned_cols=58 Identities=29% Similarity=0.452 Sum_probs=49.9
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+.++.++|.+...+.++++++++. ++++.|.+++.+++||+++ .++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 457899998644566899999998 9999999999999999984 468999999999864
No 111
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.69 E-value=8e-05 Score=61.59 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=36.5
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 210 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 210 ~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd 96 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVD 96 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC
Confidence 568899888999999999999999999999999999998
No 112
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.67 E-value=8.2e-05 Score=60.81 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=49.5
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.++.++|.. ++.++++++++. ++++.|.+++..++||+++ .++++|+|+.+|++.
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence 34678899975 677899999998 9999999999999999984 468999999999874
No 113
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.63 E-value=8.9e-05 Score=78.04 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=78.1
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC---------------
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------- 207 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~--------------- 207 (372)
...+|+++|+. .+++++++++++. ++.+.|.+++++++||+++ +|+++|+++.+|++.....
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~-~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDE-DGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcC-CCCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 46789999982 3788999999998 9999999999999999984 5699999999999863321
Q ss_pred ----C-------CcccccccccCCcee---cCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 208 ----D-------EVPVKSVTIRRIPRV---PETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 208 ----~-------~~~V~dim~r~v~~V---~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
. ..++.++|.+.+..+ +...+..-+.+.|++.+....|++.
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia 375 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA 375 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH
Confidence 0 113455665555443 4466667888888888887777654
No 114
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.62 E-value=0.00012 Score=58.93 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=41.8
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 157 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 157 vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+.++.+++++. ++++.|.+++..++||++++.++++|+++.+|+++
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999998 99999999999999999854479999999999975
No 115
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.56 E-value=9.7e-05 Score=61.59 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=47.4
Q ss_pred cccccccccccCccEEEEe----CCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAID----INAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~----~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.+++++|.+...++.++ +++++. ++++.|.+++.+++||++++.++++|+|+.+|+++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4567899997533333343 688997 99999999999999999854358999999999975
No 116
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.51 E-value=0.00019 Score=58.18 Aligned_cols=56 Identities=20% Similarity=0.469 Sum_probs=48.4
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+.++.++|.+ .+.++++++++. ++++.|.+++.+++||+++ .++++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDE-EGRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence 3468899975 567899999998 9999999999999999984 468999999999863
No 117
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.51 E-value=0.0003 Score=73.06 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=71.5
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCccccc----ccccCC
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKS----VTIRRI 220 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~d----im~r~v 220 (372)
.+++++|++ ++.++++++++. ++++.|.+++..++||+|+ +++++|+|+.+|+++..... +..+ .+....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence 569999985 788999999998 9999999999999999984 46899999999999854322 1111 111222
Q ss_pred ceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 221 PRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 221 ~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+.......+.++.|.+.+.+. +++|
T Consensus 222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D 246 (479)
T PRK07807 222 --VGINGDVAAKARALLEAGVDV-LVVD 246 (479)
T ss_pred --hccChhHHHHHHHHHHhCCCE-EEEe
Confidence 223345678888898888888 5667
No 118
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.48 E-value=0.00021 Score=58.17 Aligned_cols=58 Identities=28% Similarity=0.481 Sum_probs=50.5
Q ss_pred ccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 142 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 142 l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+...++.++|.+ ++.++++++++. ++++.|.+.+.+++||+++ .++++|+|+.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDD-QGRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence 355678999975 677899999998 9999999999999999984 468999999999975
No 119
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.47 E-value=0.00024 Score=57.09 Aligned_cols=55 Identities=20% Similarity=0.448 Sum_probs=48.6
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
..++.++|.+ ++.+++++.++. ++++.+.+++.+++||+++ ++++|+|+.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 4578999975 677899999998 9999999999999999984 78999999999975
No 120
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.45 E-value=0.00025 Score=58.31 Aligned_cols=58 Identities=26% Similarity=0.515 Sum_probs=50.7
Q ss_pred ccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 142 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 142 l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
....++.++|.+ .+.++++++++. ++++.|.+++.+++||+++ .++++|+++.+|++.
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~ 123 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA 123 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence 356678999975 677899999998 9999999999999999984 578999999999975
No 121
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.00029 Score=57.30 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=49.1
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.++.++|.. ++.++++++++. ++++.|.+++...+||+++ ++++|+|+.+|+++
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 44678899964 677999999998 9999999999999999984 78999999999975
No 122
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.41 E-value=0.00033 Score=57.89 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=44.8
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHh
Q 017404 147 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL 202 (372)
Q Consensus 147 V~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl 202 (372)
+.++|.+ ++.+++++.++. ++++.|.+++.+++||+++ .++++|+|+.+|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence 3456764 677899999998 9999999999999999984 46899999999985
No 123
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.40 E-value=0.00037 Score=56.61 Aligned_cols=57 Identities=14% Similarity=0.298 Sum_probs=47.9
Q ss_pred cccccccccccCccEEEEeCC--CChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDIN--AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d--~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.++.++|.+ ++.+++++ +++. ++++.|.+++..++||+++ .++++|+|+.+|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~ 114 (115)
T cd04620 56 SDLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ 114 (115)
T ss_pred cccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence 34678899975 56678877 6887 9999999999999999984 468999999999975
No 124
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.40 E-value=0.00034 Score=55.82 Aligned_cols=56 Identities=18% Similarity=0.389 Sum_probs=48.3
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+.+++++|.+ .+.++++++++. ++++.|.+++..++||+++ .|+++|+++.+|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence 3468899975 467899999998 9999999999999999984 468999999999975
No 125
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.39 E-value=0.00062 Score=55.11 Aligned_cols=54 Identities=24% Similarity=0.524 Sum_probs=47.1
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHH-cCCceeeEeeCCCCcEEEEEehhhHh
Q 017404 146 TASDAMTPIAETFAIDINAKLDKELMNLILE-KGHSRVPVYYEEPTNIIGLILVKNLL 202 (372)
Q Consensus 146 tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~-~~~sriPV~d~~~d~iVGIVs~kDLl 202 (372)
++.++|++ +++++.++.++. ++.+.|.+ ++++++||++++.++++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 69999985 678999999998 99999999 79999999984323899999999974
No 126
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00033 Score=56.54 Aligned_cols=55 Identities=22% Similarity=0.416 Sum_probs=48.1
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+.++.++|.+ .+.++++++++. ++++.|.+++..++||++ .++++|+++.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhc
Confidence 4578999964 566899999998 999999999999999997 368999999999975
No 127
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.38 E-value=0.00051 Score=54.79 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=46.8
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 146 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 146 tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
++.++|.+ ...++++++++. ++++.|.+++.+.+||+++ .++++|+++.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 47888976 456789999998 9999999999999999984 468999999999874
No 128
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.37 E-value=0.00037 Score=56.13 Aligned_cols=57 Identities=16% Similarity=0.390 Sum_probs=49.5
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.++.++|.+ ++.+++++.++. ++++.|.+++...+||+++ .++++|+++.+|+++
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence 35578999975 567899999998 9999999999999999984 468999999999874
No 129
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.37 E-value=0.00037 Score=59.34 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=49.2
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.+|+++|.+ ++.++++++++. ++++.|.++++.++||+++ ++++|+|+.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 35679999975 566899999998 9999999999999999984 68999999999875
No 130
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.37 E-value=0.00075 Score=68.16 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhcccccccccc--cccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC
Q 017404 130 HDETTIIAGALELTEKTASDA--MTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE 207 (372)
Q Consensus 130 ~~E~~~i~~vl~l~~~tV~dI--Mtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~ 207 (372)
.+..+.+..........+..+ ++++...+++.+..++- ++...+.++++.|+||.|...++++.+++.+-+++....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~ 213 (381)
T KOG1764|consen 135 LDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWL 213 (381)
T ss_pred HHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHH
Confidence 334444433333344444222 34444547888888887 899999999999999998556799999999999874321
Q ss_pred --CC--------cccccc---cccCCceecCCCCHHHHHHHHHhcCCcEEEEEec
Q 017404 208 --DE--------VPVKSV---TIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQ 249 (372)
Q Consensus 208 --~~--------~~V~di---m~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVDE 249 (372)
.. .++.++ +...+..+.+++++.+|++.|..++..-+||+|+
T Consensus 214 ~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~ 268 (381)
T KOG1764|consen 214 NGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDE 268 (381)
T ss_pred hhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC
Confidence 11 122222 1235778999999999999999999999999993
No 131
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.35 E-value=0.00043 Score=55.94 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=49.0
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
...++.++|.+ ++.++++++++. ++++.|.+++..++||+++ .|+++|+++.+|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence 44578889975 677899999998 9999999999999999974 468999999999874
No 132
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.34 E-value=0.0004 Score=55.88 Aligned_cols=57 Identities=21% Similarity=0.386 Sum_probs=49.5
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
..++.++|.+ ++.++++++++. ++++.|.+.+.+++||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4789999986 567899999998 99999999999999999741468999999999874
No 133
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.34 E-value=0.00032 Score=57.40 Aligned_cols=57 Identities=21% Similarity=0.448 Sum_probs=49.9
Q ss_pred ccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 142 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 142 l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+...++.++|.+ ++.++++++++. ++++.|.+.+.+++||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 356678899975 677899999998 9999999999999999984 69999999999975
No 134
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.34 E-value=0.00046 Score=56.14 Aligned_cols=56 Identities=18% Similarity=0.390 Sum_probs=47.9
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCC-CcEEEEEehhhHhc
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLILVKNLLT 203 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~-d~iVGIVs~kDLl~ 203 (372)
.++.++|.+ ++.++++++++. ++++.|.+++..++||++++. ++++|+|+.+|++.
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 347788875 677899999998 999999999999999998542 68999999999975
No 135
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00047 Score=55.63 Aligned_cols=55 Identities=25% Similarity=0.529 Sum_probs=48.1
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+..|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 4568888974 677899999998 9999999999999999984 68999999999864
No 136
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.33 E-value=0.039 Score=56.32 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=66.9
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC-C--CC-ccccccc---
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-E--DE-VPVKSVT--- 216 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~-~--~~-~~V~dim--- 216 (372)
..+++++|. ++.+++++.++. ++++.|++++....+|+|+ .|.++|+|+..|++...- + ++ ..-.+.+
T Consensus 254 ~~~l~~~~~---~~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~ 328 (408)
T TIGR03520 254 NFDWQSLLR---EPYFVPENKKLD-DLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI 328 (408)
T ss_pred CCCHHHHcC---CCeEeCCCCcHH-HHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence 345788886 356899999998 9999999999999999984 568999999999997431 1 11 1111111
Q ss_pred ccCCceecCCCCHHHHHHHHHh
Q 017404 217 IRRIPRVPETLPLYEILNEFQK 238 (372)
Q Consensus 217 ~r~v~~V~~~~~l~~aL~~M~~ 238 (372)
......++..+++.++.+.|.-
T Consensus 329 ~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 329 DDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred CCCeEEEEeccCHHHHHHHhCC
Confidence 2334668899999999999944
No 137
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.32 E-value=0.00041 Score=58.16 Aligned_cols=56 Identities=18% Similarity=0.439 Sum_probs=48.9
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
...++.++|.+ ++..+++++++. ++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 34478999975 567899999998 9999999999999999984 79999999999975
No 138
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.32 E-value=0.0007 Score=45.19 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=27.3
Q ss_pred CCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 219 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 219 ~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++++++++.++++.|.+++.+.++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 30 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVD 30 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEEC
Confidence 356789999999999999999999999998
No 139
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.31 E-value=0.00048 Score=55.53 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=48.9
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+++.+|++.
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 45578899975 677899999997 9999999999999999973 68999999999975
No 140
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.0016 Score=68.21 Aligned_cols=101 Identities=21% Similarity=0.319 Sum_probs=74.4
Q ss_pred cccccccCc---cEEEEeCC-CChHHHHHHHHHHcCCceeeEee-CCCCcEEEEEehhhHhccCC------C--------
Q 017404 147 ASDAMTPIA---ETFAIDIN-AKLDKELMNLILEKGHSRVPVYY-EEPTNIIGLILVKNLLTIHP------E-------- 207 (372)
Q Consensus 147 V~dIMtpr~---~vvtV~~d-~tv~~ea~~~m~~~~~sriPV~d-~~~d~iVGIVs~kDLl~~~~------~-------- 207 (372)
..++|.|+. ....++.+ .+++ +....|.++.|+.+||+- ++...++|++..||+..... +
T Consensus 545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~ 623 (696)
T KOG0475|consen 545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY 623 (696)
T ss_pred hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence 445554432 35566665 8897 999999999999999874 45678999999999863210 0
Q ss_pred -------------CCcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 208 -------------DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 208 -------------~~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
.....+++|--.+.+|...+|...+++.|++-+.....|..
T Consensus 624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~ 677 (696)
T KOG0475|consen 624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK 677 (696)
T ss_pred cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc
Confidence 11345677656677899999999999999988888887753
No 141
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.30 E-value=0.0015 Score=68.27 Aligned_cols=102 Identities=14% Similarity=0.184 Sum_probs=72.2
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCC--cccccccccCC
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRRI 220 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~--~~V~dim~r~v 220 (372)
.+.+|.++|++...++++++++++. ++++.|.+++..++||+++ .++++|+|+.+|+++.....+ .+..|- ...+
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~p~~~~~~~d~-~~~l 237 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGYPKLGKPSVGK-DGKL 237 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCcCccccccCC-CCCE
Confidence 4678999999865688999999998 9999999999999999984 568999999999998543211 111111 1111
Q ss_pred c---eecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 221 P---RVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 221 ~---~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
. .|.....-.+-.+.+.+.+...+. +|
T Consensus 238 ~vgaavg~~~~~~~r~~~l~~ag~d~i~-iD 267 (505)
T PLN02274 238 LVGAAIGTRESDKERLEHLVKAGVDVVV-LD 267 (505)
T ss_pred EEEEEEcCCccHHHHHHHHHHcCCCEEE-Ee
Confidence 1 244444445666777777877764 45
No 142
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.28 E-value=0.00033 Score=61.78 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=35.4
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 211 PVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 211 ~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
..+.+|.+|++++.+++++.+++..|+.++...+||++
T Consensus 66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~ 103 (187)
T COG3620 66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE 103 (187)
T ss_pred eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee
Confidence 45667899999999999999999999999999999998
No 143
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.27 E-value=0.00049 Score=55.49 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=48.0
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.++.++|.+ .+.++++++++. ++++.|.+++..++||+++ .++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence 578899975 566899999998 9999999999999999984 468999999999874
No 144
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.27 E-value=0.00052 Score=54.56 Aligned_cols=55 Identities=33% Similarity=0.430 Sum_probs=48.2
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~ 104 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL 104 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence 4568899975 667899999998 9999999999999999984 79999999999873
No 145
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.00049 Score=56.65 Aligned_cols=57 Identities=21% Similarity=0.413 Sum_probs=49.3
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.++.++|.+ .+.++++++++. ++++.|.+.+..++||+++ .++++|+|+.+|+++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhc
Confidence 45678899875 677999999998 9999999999999999974 368999999999975
No 146
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.00047 Score=55.67 Aligned_cols=55 Identities=25% Similarity=0.427 Sum_probs=48.4
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
..++.++|.+ ++.++++++++. ++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 4578899975 567899999998 9999999999999999984 68999999999975
No 147
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.26 E-value=0.0013 Score=68.62 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=69.5
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcccccccccCC--
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRI-- 220 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~V~dim~r~v-- 220 (372)
.+.+|+++|++..++++++++.++. ++++.|.+++...+||+++ .++++|+|+.+|+++.....+. ..+---+-.
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~~~p~a-~~D~~GrL~Vg 233 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNRGYPNA-SLDSNGQLLVG 233 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhcccCchh-hhccCCCEEEE
Confidence 3567999999766888999999998 9999999999999999984 5689999999999975322111 111000001
Q ss_pred ceecCCCCHHHHHHHHHhcCCcEEEE
Q 017404 221 PRVPETLPLYEILNEFQKGHSHMAVV 246 (372)
Q Consensus 221 ~~V~~~~~l~~aL~~M~~~~~~~a~V 246 (372)
..+.......+-++.+.+.+...+.|
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~i 259 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVV 259 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 12333223356666677777766544
No 148
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.26 E-value=0.0006 Score=54.97 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=47.8
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.++.++|.+ .+.++++++++. ++++.|.+.+..++||+++ .++++|+++.+|+++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 358899975 567899999998 9999999999999999974 468999999999975
No 149
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.26 E-value=0.00052 Score=56.02 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=50.1
Q ss_pred ccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 142 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 142 l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
....++.++|.+ .+.++++++++. ++++.+.+++++.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456779999975 667899999998 9999999999999999984 68999999999975
No 150
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.26 E-value=0.00043 Score=68.00 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=51.4
Q ss_pred ccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhcc
Q 017404 142 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 204 (372)
Q Consensus 142 l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~ 204 (372)
+.+.+|+++|++ ++.++++++++. ++++.|.+++..++||++ .++++|+|+.+|+++.
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 456789999986 678999999998 999999999999999997 3589999999999864
No 151
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.25 E-value=0.00059 Score=54.91 Aligned_cols=56 Identities=23% Similarity=0.433 Sum_probs=48.9
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.++.++|.+ .+.++++++++. ++++.|.+++.+++||++ .++++|+|+.+|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 45678899975 567899999998 999999999999999997 468999999999874
No 152
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.24 E-value=0.001 Score=54.63 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=28.6
Q ss_pred cCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 218 RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 218 r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++.++++++++.++++.|.+++.+.+||+|
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~ 31 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVD 31 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEEC
Confidence 3567899999999999999999999999998
No 153
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.23 E-value=0.0014 Score=68.17 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=71.3
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCc---ccccccccCC
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV---PVKSVTIRRI 220 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~---~V~dim~r~v 220 (372)
..++.++|++ .++++++++.++. ++++.|.+++.+.+||+++ .++++|+|+.+|+++.....+. .-..++....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 4579999983 3678999999998 9999999999999999984 5689999999999875321111 1112222223
Q ss_pred ceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 221 PRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 221 ~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
..+.++ -.+.++.|.+.+.+.+ |+|
T Consensus 223 i~~~~~--~~e~a~~L~~agvdvi-vvD 247 (486)
T PRK05567 223 VGVGAD--NEERAEALVEAGVDVL-VVD 247 (486)
T ss_pred cccCcc--hHHHHHHHHHhCCCEE-EEE
Confidence 333332 2788889999999955 555
No 154
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.00068 Score=55.50 Aligned_cols=57 Identities=16% Similarity=0.379 Sum_probs=49.3
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
...++.++|.. ++.++++++++. ++++.|.+++...+||+++ .++++|+++.+|++.
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhc
Confidence 56678899964 667899999998 9999999999999999984 468999999999975
No 155
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.22 E-value=0.00077 Score=53.94 Aligned_cols=56 Identities=30% Similarity=0.532 Sum_probs=46.2
Q ss_pred ccccccccccCccEEEEeC-CCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDI-NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~-d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
..++.++|.+ .+..+.. ++++. ++++.|.+.+++++||+++ .++++|+|+.+|+++
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 4578899964 3344556 99997 9999999999999999984 468999999999975
No 156
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.22 E-value=0.00049 Score=57.93 Aligned_cols=57 Identities=25% Similarity=0.388 Sum_probs=50.1
Q ss_pred ccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 142 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 142 l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
....++.++|.+ ++.++++++++. ++++.|.+++.+++||++ .|+++|+++.+|+++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence 356689999975 677899999998 999999999999999998 468999999999875
No 157
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.22 E-value=0.0012 Score=56.54 Aligned_cols=30 Identities=27% Similarity=0.270 Sum_probs=27.8
Q ss_pred CCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 219 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 219 ~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
.++++++++++.+|++.|.+++.+.+||+|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD 31 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD 31 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 467899999999999999999999999999
No 158
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.21 E-value=0.00064 Score=54.69 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=48.4
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+.++.++|.. ++.++++++++. ++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3568888864 677899999998 9999999999999999984 68999999999975
No 159
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.20 E-value=0.00073 Score=54.46 Aligned_cols=56 Identities=25% Similarity=0.497 Sum_probs=48.3
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.++.++|.+ ++.++++++++. ++++.+.+++...+||+++ . +++|+++.+|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence 44578899975 577899999998 9999999999999999984 3 8999999999874
No 160
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.20 E-value=0.00077 Score=53.84 Aligned_cols=55 Identities=31% Similarity=0.569 Sum_probs=47.7
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.++.++|.+ .+.++++++++. ++++.|.+++.+++||+++ .++++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence 468888975 567899999998 9999999999999999984 468999999999874
No 161
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.20 E-value=0.00072 Score=66.15 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=50.7
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhcc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 204 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~ 204 (372)
.+.+|+++|++ ++.++++++++. ++++.|.+++..++||+++ .++++|+|+.+|+++.
T Consensus 261 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 261 LTTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA 318 (321)
T ss_pred cCCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence 34568999986 677899999998 9999999999999999984 4589999999999864
No 162
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.20 E-value=0.00089 Score=53.67 Aligned_cols=54 Identities=11% Similarity=0.236 Sum_probs=46.8
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.++.++|.+ ...+++++.++. ++++.|.+++.+++||++ .++++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 357888875 467899999998 999999999999999997 368999999999874
No 163
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.20 E-value=0.00081 Score=53.88 Aligned_cols=57 Identities=18% Similarity=0.337 Sum_probs=48.9
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
...+++++|.+ ++.++++++++. ++++.|.+.+...+||+++ .++++|+++.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 45678899975 677899999998 9999999999999999984 468999999999875
No 164
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.19 E-value=0.00091 Score=53.59 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=47.7
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.++.++|.+ ++.++++++++. ++++.|.+++.+++||+++ .++++|+++.+|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence 457788875 677899999998 9999999999999999974 468999999999975
No 165
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.17 E-value=0.0007 Score=55.13 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=46.4
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
...++++|.+....+..++++++. ++++.|.+++..++||+++ .++++|+|+.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~ 113 (114)
T cd04602 56 ETPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVND-DGELVALVTRSDLKK 113 (114)
T ss_pred CCCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence 345889997643333334499997 9999999999999999974 468999999999874
No 166
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.17 E-value=0.00082 Score=54.19 Aligned_cols=57 Identities=19% Similarity=0.407 Sum_probs=49.2
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhcc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 204 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~ 204 (372)
+.+++++|.+ ++..+++++++. ++++.|.+++...+||+++ +++++|+++..|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhh
Confidence 4578899975 567899999998 9999999999999999974 4689999999999863
No 167
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.17 E-value=0.0012 Score=52.68 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=28.5
Q ss_pred cCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 218 RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 218 r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++++.+++++++.+|++.|.+++...+||+|
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d 31 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLD 31 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEEC
Confidence 4678899999999999999999999999998
No 168
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.17 E-value=0.00074 Score=55.31 Aligned_cols=57 Identities=19% Similarity=0.430 Sum_probs=49.2
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
...++.++|.+ ++.++++++++. ++++.|.+++.+++||+++ .++++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhc
Confidence 45678889964 567899999998 9999999999999999984 478999999999975
No 169
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.00075 Score=54.30 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=47.8
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.++.++|.. ++.++++++++. ++++.|.+++..++||+++ .++++|+++.+|+..
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence 468889964 677899999998 9999999999999999974 368999999999864
No 170
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.12 E-value=0.00067 Score=54.95 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=46.2
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.++.++|.+ .+.++++++++. ++++.|.+++ .+||+++ .++++|+++.+|+++
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~ 115 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDD-DGIFIGIITRREILK 115 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhc
Confidence 46679999986 567899999998 9999998765 5999984 468999999999975
No 171
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.12 E-value=0.0012 Score=43.95 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=39.9
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhcc
Q 017404 157 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 204 (372)
Q Consensus 157 vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~ 204 (372)
+.++++++++. ++.+.|.+++++.+||+++ +++++|+++.+++...
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHh
Confidence 35688999998 9999999999999999984 4689999999998753
No 172
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.07 E-value=0.00095 Score=55.42 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=49.2
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeC-CCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYE-EPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~-~~d~iVGIVs~kDLl~ 203 (372)
.+.++.++|.+ ++++++++.++. ++++.|.+.+...+||+++ +.++++|+|+.+|+++
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678899975 677899999998 9999999999999999852 3578999999999875
No 173
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.05 E-value=0.0027 Score=53.05 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=28.8
Q ss_pred cCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 218 RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 218 r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++.++++++++.++++.|++++...+||+|
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd 32 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVD 32 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 5678899999999999999999999999998
No 174
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.05 E-value=0.002 Score=51.63 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=46.5
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 146 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 146 tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
++.++|.+ ++.++++++++. ++++.|.+++...+||+++ .++++|+++.+|+++
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDA-ENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence 47788864 567899999998 9999999999999999984 478999999999864
No 175
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.001 Score=54.55 Aligned_cols=55 Identities=33% Similarity=0.492 Sum_probs=47.8
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.++.++|.+ +++++++++++. ++++.|.+++..++||+++ .++++|+++.+|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDE-NGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhh
Confidence 357888864 677899999998 9999999999999999974 468999999999975
No 176
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.03 E-value=0.0015 Score=54.20 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=44.0
Q ss_pred cccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 149 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 149 dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+.|.+ ++.++++++++. ++++.|.+++.+++||+++ .++++|+|+..|+++
T Consensus 75 ~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLK-EVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHH-HHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence 45543 677899999998 9999999999999999984 468999999999975
No 177
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.97 E-value=0.0019 Score=66.31 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=36.8
Q ss_pred CcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 209 EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 209 ~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
..+++++|.+++.++++++++.++++.|.+++...+||+|
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd 373 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT 373 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 4578999888999999999999999999999999999998
No 178
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.93 E-value=0.0016 Score=52.34 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=44.9
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 146 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 146 tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.++|. ++.++++++++. ++++.|.+++.+++||+++ .++++|+++.+|++.
T Consensus 58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 4666664 356889999998 9999999999999999984 468999999999874
No 179
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.92 E-value=0.002 Score=51.73 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=47.4
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.++.++|.+ .+.+++++.++. ++++.|.+.+...+||+++ .++++|+++.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence 567888864 667899999998 9999999999999999974 468999999999874
No 180
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.86 E-value=0.0024 Score=51.38 Aligned_cols=56 Identities=18% Similarity=0.330 Sum_probs=47.7
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+.++.++|.+ ++.++++++++. ++++.|.+++...+||+++ .++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence 3468888875 567899999997 9999999999999999984 468999999999874
No 181
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.81 E-value=0.0022 Score=54.85 Aligned_cols=56 Identities=18% Similarity=0.411 Sum_probs=49.1
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
...++.++|.+ .+.++++++++. ++++.|.+++++++||+++ ++++|+++.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 45678899975 677899999998 9999999999999999984 68999999999874
No 182
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.79 E-value=0.0026 Score=60.43 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=35.7
Q ss_pred cccccccccC-CceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 210 VPVKSVTIRR-IPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 210 ~~V~dim~r~-v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
.+++++|.++ ++++++++++.++++.|.+.+.+.++|+|
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd 194 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCD 194 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEe
Confidence 4688898888 89999999999999999999999999998
No 183
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.78 E-value=0.0029 Score=51.22 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=43.4
Q ss_pred ccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 150 AMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 150 IMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+|.+ ++.++++++++. ++++.|.+++..++||++ .++++|+++.+|+++
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence 7864 567899999998 999999999999999995 468999999999975
No 184
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.78 E-value=0.0027 Score=67.33 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=51.2
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCC-CcEEEEEehhhHhccC
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLILVKNLLTIH 205 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~-d~iVGIVs~kDLl~~~ 205 (372)
+.++.|+|++ ++.++++++++. ++++.|.+++.+++||+|+++ ++++|+|+.+|+++..
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 4679999985 567899999998 999999999999999998543 4799999999998753
No 185
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.67 E-value=0.0062 Score=61.56 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=59.8
Q ss_pred ccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC-CCCcccccccccCC
Q 017404 142 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-EDEVPVKSVTIRRI 220 (372)
Q Consensus 142 l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~-~~~~~V~dim~r~v 220 (372)
..-.+++++|.|.... ...+.+ . +++ +++.+.+.|++. |+++..+...... .....+.+ +....
T Consensus 271 ~~~l~a~~~m~~~~~~--~~~~~~-~--~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 335 (382)
T TIGR03415 271 LNVLTARSLMRPLTDL--EHVDGG-W--CVS---DRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVES-LEAAP 335 (382)
T ss_pred ccceeHHHHhcccccc--cccCcc-h--hhh---hcccceeEeecc------ceecccchHhHhhcccccchhh-hcccC
Confidence 4556889999653322 222222 2 232 378888888862 8888777654222 12334666 47788
Q ss_pred ceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 221 PRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 221 ~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
+++++++++.+++..+.+.+.. ++|+|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 362 (382)
T TIGR03415 336 TVINPDTLMRDVLAARHRTGGA-ILLVE 362 (382)
T ss_pred cccCCCCcHHHHHHHHhcCCCC-eEEee
Confidence 8999999999999998887766 45667
No 186
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.66 E-value=0.0038 Score=64.89 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=58.8
Q ss_pred HHHHHHHhhc---ccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC
Q 017404 132 ETTIIAGALE---LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP 206 (372)
Q Consensus 132 E~~~i~~vl~---l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~ 206 (372)
++++..+++. -...+|+++||. ++++++.++.+- +|+-.|.++++.|+||++ +|+++|+|+..|++....
T Consensus 198 ~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 198 RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFS 270 (610)
T ss_pred hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhC
Confidence 4556666663 245589999995 889999999998 999999999999999997 469999999999998654
No 187
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.60 E-value=0.0037 Score=50.84 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=46.5
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCc---eeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS---RVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~s---riPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.+++++|.+ ++.++++++++. ++++.|.+++.. ..||+++ .++++|+|+.+|+++
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 45679999975 677899999998 999999988753 4467764 478999999999874
No 188
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0063 Score=59.69 Aligned_cols=102 Identities=18% Similarity=0.223 Sum_probs=72.3
Q ss_pred HHHHHHhhcccccccccccccCccEEEEeCC-CChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCCCcc
Q 017404 133 TTIIAGALELTEKTASDAMTPIAETFAIDIN-AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVP 211 (372)
Q Consensus 133 ~~~i~~vl~l~~~tV~dIMtpr~~vvtV~~d-~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~~~~ 211 (372)
++.++++-...-.++++||.+ .+......+ ..-+ .+...+.+.+.+.+-+++ ..++.+|+++..++...
T Consensus 262 ~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~------- 331 (386)
T COG4175 262 RDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPR-VALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA------- 331 (386)
T ss_pred HHHHhcCChhheeeHHHhhcc-cccccccccccccc-hhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc-------
Confidence 455666666677789999985 222222222 2223 567777877777776776 45679999998877653
Q ss_pred cccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 212 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 212 V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
.+..++..++.++++.+.+....+..++.+ |+|
T Consensus 332 ---~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvd 364 (386)
T COG4175 332 ---ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVD 364 (386)
T ss_pred ---cccccccccCccchHHHHHHHHhcCCCcee-EEc
Confidence 246778889999999999999999988776 556
No 189
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.54 E-value=0.0057 Score=59.58 Aligned_cols=87 Identities=13% Similarity=0.190 Sum_probs=66.0
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCC---CCc------ccccc
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEV------PVKSV 215 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~---~~~------~V~di 215 (372)
.++.++|.| +++++++.++. ++++.|++++...+||+|+ .|.++|+|+..|++..... ... .+...
T Consensus 133 ~~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~ 207 (292)
T PRK15094 133 FSMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL 207 (292)
T ss_pred CCHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhCCCccccccccccccEEe
Confidence 457889974 34799999998 9999999999999999984 4679999999999974321 111 12221
Q ss_pred cccCCceecCCCCHHHHHHHHH
Q 017404 216 TIRRIPRVPETLPLYEILNEFQ 237 (372)
Q Consensus 216 m~r~v~~V~~~~~l~~aL~~M~ 237 (372)
......|+..+++.++.+.+.
T Consensus 208 -~~~~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 208 -SRHTWTVRALASIEDFNEAFG 228 (292)
T ss_pred -CCCeEEEEeccCHHHHHHHhC
Confidence 233467999999999999883
No 190
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.50 E-value=0.0054 Score=48.97 Aligned_cols=53 Identities=21% Similarity=0.400 Sum_probs=45.5
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 146 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 146 tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
++.++|.. ++.+++.++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 46777864 566789999998 9999999999999999983 58999999999874
No 191
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.34 E-value=0.013 Score=46.01 Aligned_cols=53 Identities=28% Similarity=0.565 Sum_probs=45.7
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 147 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 147 V~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+.++|.+ ++.+++++.++. ++++.+.+.+.+.+||++++ ++++|+++.+|+++
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 5677764 567889999998 99999999999999999854 79999999999875
No 192
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.33 E-value=0.013 Score=46.57 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=27.6
Q ss_pred CCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 219 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 219 ~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++.++.+++++.++++.|.+++.+.+||+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~ 31 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD 31 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee
Confidence 467899999999999999999999999998
No 193
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.28 E-value=0.0063 Score=62.81 Aligned_cols=60 Identities=23% Similarity=0.423 Sum_probs=52.5
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccC
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 205 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~ 205 (372)
.+.+++++|++ .++++++++.++. ++++.|.+++...+||+++ .++++|+|+.+|+++..
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhcc
Confidence 35679999984 3678999999998 9999999999999999984 56899999999999754
No 194
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.018 Score=59.30 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=53.2
Q ss_pred cccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhcc
Q 017404 141 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 204 (372)
Q Consensus 141 ~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~ 204 (372)
.-++..++++|.+ +++++.++++.+ ++++.+.+++....||+| ++++++|+++..|++..
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidv 251 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDV 251 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHH
Confidence 5577789999987 478999999997 999999999999999998 45699999999999863
No 195
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=94.82 E-value=0.042 Score=54.42 Aligned_cols=59 Identities=15% Similarity=0.325 Sum_probs=52.3
Q ss_pred ccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhcc
Q 017404 142 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 204 (372)
Q Consensus 142 l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~ 204 (372)
.++.+...+|+. +++++.+.+|+. .+...|.-.++.-+||+++ +.+++|+|+.+|+++.
T Consensus 246 ~~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~ 304 (432)
T COG4109 246 KPSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKS 304 (432)
T ss_pred CCCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHH
Confidence 366788999996 678999999998 8999999999999999985 4599999999999874
No 196
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=93.36 E-value=0.19 Score=50.61 Aligned_cols=56 Identities=21% Similarity=0.414 Sum_probs=48.0
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccC
Q 017404 145 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 205 (372)
Q Consensus 145 ~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~ 205 (372)
..+.+.|.+ .+.++++++++. +++..+.++++. +||+|+ .++++|+|+..+++...
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDAL 357 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHH
Confidence 457888864 566899999998 999999999999 999984 57999999999998754
No 197
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.31 Score=49.31 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=71.5
Q ss_pred cccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC---CCCcccccccc
Q 017404 141 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTI 217 (372)
Q Consensus 141 ~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~---~~~~~V~dim~ 217 (372)
.=....+.++|+++. ++.+.+.+++ ++-+.+.+++-.++||++ +.|++|-+++..||.+... .....-+++|.
T Consensus 167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~~~yPlask~~~kqll~ 242 (503)
T KOG2550|consen 167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKNRDYPLASKDSTKQLLC 242 (503)
T ss_pred hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhhcCCCccccCcccceee
Confidence 345667899999865 7899999998 999999999999999998 5679999999999987421 11122344443
Q ss_pred cCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 218 RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 218 r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
.-.+--.+ .=..-+..+.+.+...+ |.|
T Consensus 243 gAaiGTre--~dK~rl~ll~~aGvdvv-iLD 270 (503)
T KOG2550|consen 243 GAAIGTRD--DDKERLDLLVQAGVDVV-ILD 270 (503)
T ss_pred eecccccc--chhHHHHHhhhcCCcEE-EEe
Confidence 33322222 23456677778887765 556
No 198
>PRK11573 hypothetical protein; Provisional
Probab=93.13 E-value=0.38 Score=49.21 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=58.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC----CC-C----cccccccccCCceecCC
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP----ED-E----VPVKSVTIRRIPRVPET 226 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~----~~-~----~~V~dim~r~v~~V~~~ 226 (372)
++..|+++.++. ++++.|++++..-.-|+|+ .|...|+|+..|++...- +. + ..+... ......++..
T Consensus 263 ~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~~~~v~G~ 339 (413)
T PRK11573 263 EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDGSVIIDGT 339 (413)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCCEEEEEee
Confidence 466899999998 9999999999888888884 568999999999997321 11 1 112222 2334669999
Q ss_pred CCHHHHHHHHH
Q 017404 227 LPLYEILNEFQ 237 (372)
Q Consensus 227 ~~l~~aL~~M~ 237 (372)
+++.++-+.+.
T Consensus 340 ~~l~d~~~~l~ 350 (413)
T PRK11573 340 ANVREINKAFN 350 (413)
T ss_pred eEHHHHHHHhC
Confidence 99999999884
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=90.65 E-value=0.57 Score=47.77 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=47.3
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccC
Q 017404 144 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 205 (372)
Q Consensus 144 ~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~ 205 (372)
+.++.++|.+ ...++++++++. +++..+.++.+. +||+| +.++++|+|+..+++...
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~ 392 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRAL 392 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHH
Confidence 3467777764 566899999998 999999987766 99998 467999999999998754
No 200
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=88.33 E-value=1.4 Score=45.28 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=36.1
Q ss_pred CCcccccccc--cCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 208 DEVPVKSVTI--RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 208 ~~~~V~dim~--r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
++.+++++|+ .++.+++.+.++.++.+.+.+.+....||.+
T Consensus 204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~ 246 (429)
T COG1253 204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYD 246 (429)
T ss_pred CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc
Confidence 3578999985 4567899999999999999999999999998
No 201
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=84.94 E-value=3.6 Score=41.44 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=60.8
Q ss_pred cccccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC-----CCCcccccc
Q 017404 141 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----EDEVPVKSV 215 (372)
Q Consensus 141 ~l~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~-----~~~~~V~di 215 (372)
+-++.+-.+++.-..++..+|+.+++. +-+..+++.+-.---|+| +.|.+.|+|+..|++.-.- ..+....++
T Consensus 261 e~~~~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev 338 (423)
T COG4536 261 EKNEFTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEV 338 (423)
T ss_pred ccCcccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhccccccCcccchhh
Confidence 333355566775556888999999998 778888877665556677 5789999999999986211 111222222
Q ss_pred c--ccCCceecCCCCHHHHHHHH
Q 017404 216 T--IRRIPRVPETLPLYEILNEF 236 (372)
Q Consensus 216 m--~r~v~~V~~~~~l~~aL~~M 236 (372)
- ...-..+..++++.++-+.|
T Consensus 339 ~~q~dgs~iidGs~~iRdlNr~l 361 (423)
T COG4536 339 IPQSDGSFIIDGSANVRDLNRAL 361 (423)
T ss_pred cccCCCcEEEeCCCcHHHHHHhc
Confidence 1 11234477777777766655
No 202
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=82.03 E-value=4.4 Score=39.18 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=49.0
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCCCC-----------------CcccccccccC
Q 017404 157 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED-----------------EVPVKSVTIRR 219 (372)
Q Consensus 157 vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~~~-----------------~~~V~dim~r~ 219 (372)
++.|.-| ++ ||+++- +|+-|.+ .|+++-+=+..+++..++++ ...+.+.|...
T Consensus 189 ivfVTHD--id-EA~kLa-----dri~vm~--~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 189 IVFVTHD--ID-EALKLA-----DRIAVMD--AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred EEEEecC--HH-HHHhhh-----ceEEEec--CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 4455444 34 666543 5778886 46899988888887654431 11233333221
Q ss_pred C----ceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 220 I----PRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 220 v----~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
. -.++......+++..+...+...+||+|
T Consensus 259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd 291 (309)
T COG1125 259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVD 291 (309)
T ss_pred ccccCCccccchhhHHHHHHHHhcCCceeEEEC
Confidence 1 1244455556677777788888888888
No 203
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=73.20 E-value=30 Score=29.19 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHh
Q 017404 9 NQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRY 64 (372)
Q Consensus 9 ~p~r~L~tiLiGn~~~ni~~~~~~~~~~~~~~a~~i~t~lilvfGEivPK~lA~~~ 64 (372)
+|.+++..-+++..+...+...+...+....+++.++..++.+++-.+|...|..-
T Consensus 23 qP~~vi~gh~isa~iG~~~~~~~~~~~~~~alav~lai~~M~~~~~~HPPA~Atal 78 (120)
T PF04982_consen 23 QPRNVIGGHLISALIGVLCVYLFGDPWWAAALAVGLAIVLMVLTRTVHPPAGATAL 78 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCchhhhhh
Confidence 45454444444433333333344443333456677778889999999999988653
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=67.46 E-value=6.7 Score=39.77 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=38.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccC
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 205 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~ 205 (372)
++.++++++++. +++..+.++++. +||++ + |+++|+|+..+++...
T Consensus 334 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 334 APTVINPDTLMR-DVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHAL 379 (382)
T ss_pred cCcccCCCCcHH-HHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHH
Confidence 566899999998 999988887765 78887 3 7999999999998753
No 205
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=64.60 E-value=8.7 Score=41.23 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=44.9
Q ss_pred ccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhcc
Q 017404 148 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 204 (372)
Q Consensus 148 ~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~ 204 (372)
...|.| ..+++++++++. .+...++.-|..++-|+.. ..+++|+++.+|+...
T Consensus 693 ~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~-~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 693 HPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPK-TNRVVGILTRKDLARY 745 (762)
T ss_pred ccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecC-CCceeEEEehhhhhhH
Confidence 455665 557899999998 8999999999999999984 4578999999999853
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=54.72 E-value=12 Score=41.14 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=47.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCC-CcEEEEEehhhHhcc
Q 017404 143 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLILVKNLLTI 204 (372)
Q Consensus 143 ~~~tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~-d~iVGIVs~kDLl~~ 204 (372)
-.+.|+++|.. ++.++..+.|.+ |+.+.+.......+|++++.. --++|.|..+.|...
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~l 645 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTAL 645 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHH
Confidence 34579999995 889999999998 877777766699999998432 347899999998754
No 207
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=53.58 E-value=41 Score=32.19 Aligned_cols=87 Identities=14% Similarity=0.234 Sum_probs=63.7
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccCC---------CCCccccccc
Q 017404 146 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---------EDEVPVKSVT 216 (372)
Q Consensus 146 tV~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~~---------~~~~~V~dim 216 (372)
.++++.. +.+.||++-.+. ..++.++.+++...-|+|+ -|-+-|.|+..|++...- +....++.+
T Consensus 134 ~i~~lLR---Pav~VPESKrvd-~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~l- 207 (293)
T COG4535 134 DIKELLR---PAVVVPESKRVD-RLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQL- 207 (293)
T ss_pred cHHHhcc---cceecccchhHH-HHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhh-
Confidence 4555554 456799999998 8999999888888888884 567999999999997321 112335554
Q ss_pred ccCCceecCCCCHHHHHHHHHh
Q 017404 217 IRRIPRVPETLPLYEILNEFQK 238 (372)
Q Consensus 217 ~r~v~~V~~~~~l~~aL~~M~~ 238 (372)
.+.-..|..-+++.+--+.|..
T Consensus 208 s~~~~~VrALT~IedFNe~F~t 229 (293)
T COG4535 208 SRHTWRVRALTEIEDFNEAFGT 229 (293)
T ss_pred cCCceEEEecccHHHHHHHhcC
Confidence 5566678888888887777743
No 208
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=49.20 E-value=23 Score=38.99 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=36.5
Q ss_pred CcccccccccCCceecCCCCHHHHHHHHHhcCCcEEEEEe
Q 017404 209 EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 248 (372)
Q Consensus 209 ~~~V~dim~r~v~~V~~~~~l~~aL~~M~~~~~~~a~VVD 248 (372)
...|.++|.+++.++..+++..++-+.++....+..|+||
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~ 626 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVE 626 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceecccc
Confidence 3578999999999999999999999988888799999998
No 209
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=43.33 E-value=64 Score=31.13 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhchhHHHHHhhHHHHHhHhHHHHHHHHhhhhHHHHHHHHHHhHh
Q 017404 45 SVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL 98 (372)
Q Consensus 45 ~t~lilvfGEivPK~lA~~~~~~ia~~~a~~l~~~~~l~~Plv~~l~~i~~~l~ 98 (372)
.++++.+|.-|+-|+ ++.+++.=+|+|++++-.++.++-.
T Consensus 195 ~~~~~~i~~~Iltkt--------------Yi~YlliPiF~P~~~~Yg~~ynk~c 234 (285)
T PF03563_consen 195 LTLIIFIFLIILTKT--------------YICYLLIPIFYPIAYLYGWLYNKSC 234 (285)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666665 6677777888999998888888744
No 210
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=42.07 E-value=41 Score=32.71 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=40.8
Q ss_pred cccccccccccCccE--EEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 143 TEKTASDAMTPIAET--FAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 143 ~~~tV~dIMtpr~~v--vtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
+..++.+.|.+.... -.+....... +++..+...+.+.+||+| ++++++|.++..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhh
Confidence 455677777653210 1122233344 677888899999999998 4679999999999875
No 211
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=41.15 E-value=41 Score=36.26 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=44.0
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhcc
Q 017404 147 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 204 (372)
Q Consensus 147 V~dIMtpr~~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~ 204 (372)
.+++|-. .++++...++++ .+++++++-|.+..-|.+ +|++.|+|+-||+++.
T Consensus 641 lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 641 LKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRH 693 (696)
T ss_pred ceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHh
Confidence 4667654 456888889997 899999999999999875 5799999999999874
No 212
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=38.95 E-value=39 Score=35.79 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhc
Q 017404 169 ELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 203 (372)
Q Consensus 169 ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~ 203 (372)
.+.+.+.+.|-+-++|++ ++++.|+|++||+++
T Consensus 417 ~~~~~vs~~GGTPL~V~~--~~~~~GVI~LkDivK 449 (681)
T COG2216 417 AAVDEVSRLGGTPLVVVE--NGRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHhcCCCceEEEE--CCEEEEEEEehhhcc
Confidence 556677788889999997 458999999999986
No 213
>PF06177 QueT: QueT transporter; InterPro: IPR010387 This entry is represented by Bacteriophage Dp-1, QueT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes [, ], suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.
Probab=38.49 E-value=2.8e+02 Score=24.44 Aligned_cols=47 Identities=17% Similarity=0.001 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh
Q 017404 12 LLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQ 58 (372)
Q Consensus 12 r~L~tiLiGn~~~ni~~~~~~~~~~~~~~a~~i~t~lilvfGEivPK 58 (372)
+.+..+.+|+-++|...+.-.-....+.++.++++.+...+...+.+
T Consensus 44 ~~i~Gl~lG~~iaNl~sp~G~iD~i~G~l~tlia~~l~~~~~~~~~~ 90 (152)
T PF06177_consen 44 KYIPGLTLGCFIANLFSPFGIIDVIFGTLATLIAAYLTYKLKKKIKN 90 (152)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHhhhHHHHHHHHHHHHHHHHHhcc
Confidence 77788888888888764322212223334555555555555555443
No 214
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=33.80 E-value=51 Score=32.99 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=37.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeeEeeCCCCcEEEEEehhhHhccC
Q 017404 156 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 205 (372)
Q Consensus 156 ~vvtV~~d~tv~~ea~~~m~~~~~sriPV~d~~~d~iVGIVs~kDLl~~~ 205 (372)
.+.+++.++++. +.+..+.+.+ ..+||+++ +++++|+++...++.+.
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~-~p~aVvde-~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAP-CPVAVVDE-DGRYVGIISRGELLEAL 382 (386)
T ss_pred cccccCccchHH-HHHHHHhcCC-CceeEEcC-CCcEEEEecHHHHHHHH
Confidence 566888899987 7777776655 46889984 57999999999998754
No 215
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=31.94 E-value=2.2e+02 Score=21.40 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhchh
Q 017404 36 VSAWGAILISVTLILLFGEIIPQ 58 (372)
Q Consensus 36 ~~~~~a~~i~t~lilvfGEivPK 58 (372)
..+++++.++.++.=+++|.+++
T Consensus 36 ~~g~i~i~I~l~l~G~isE~i~~ 58 (63)
T PF06341_consen 36 IAGLISIGITLFLAGLISEFISK 58 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666677778899887
No 216
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=31.05 E-value=3.8e+02 Score=26.39 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=23.6
Q ss_pred hHHHHHhHhHHHHHHHHhhhhHHHHHHHHHHhHhC
Q 017404 65 GLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLG 99 (372)
Q Consensus 65 ~~~ia~~~a~~l~~~~~l~~Plv~~l~~i~~~l~g 99 (372)
+.+++.+-..+--+...++.|++.++.++..++++
T Consensus 271 ~~~ia~~HtlFNv~~~ll~lPf~~~~~~l~~~l~p 305 (307)
T TIGR00704 271 AELVAYFHVFFNLVRCLVMLPFTDPMARFCKTLIR 305 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHCC
Confidence 33455444444455667889998888888888765
No 217
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=28.43 E-value=4.6e+02 Score=24.05 Aligned_cols=42 Identities=24% Similarity=0.452 Sum_probs=23.7
Q ss_pred HHHhhhhchhHHHHHhhHH-HHHhHhHHHHHHHHhhhhHHHHHHH
Q 017404 49 ILLFGEIIPQSVCSRYGLA-IGSTVAPFVRVLVWICYPVAFPISK 92 (372)
Q Consensus 49 ilvfGEivPK~lA~~~~~~-ia~~~a~~l~~~~~l~~Plv~~l~~ 92 (372)
..++++. .|... +.+.+ -+......+..+.+.+||++|.++.
T Consensus 140 y~l~~~~-~~~a~-~~~~~~~~~~~l~~~~~~~W~~YPi~w~l~~ 182 (222)
T PF01036_consen 140 YLLFGPL-RRAAS-AVSPSVGLYNKLRNLTVVLWILYPIVWLLSE 182 (222)
T ss_dssp HHHHTHH-HHHHT-TSTHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHH-HHHHH-hcCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555 34433 34444 3334445555666889999986653
No 218
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.85 E-value=1.8e+02 Score=22.71 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=24.7
Q ss_pred HhHhHHHHHHHHhhhhHHHHHHHHHHhHhCCCCccccCHHHHHHHHHh
Q 017404 70 STVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNL 117 (372)
Q Consensus 70 ~~~a~~l~~~~~l~~Plv~~l~~i~~~l~g~~~~~~~s~eEL~~ll~~ 117 (372)
.+++.|+-+|..+..|+=..+.+..+ ......+|++|.+.+-++
T Consensus 4 ~fl~~PliiF~ifVaPiWL~LHY~sk----~~~~~~Ls~~d~~~L~~L 47 (75)
T PRK09458 4 LFLAIPLTIFVLFVAPIWLWLHYRSK----RQGSQGLSQEEQQRLAQL 47 (75)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhhccc----ccCCCCCCHHHHHHHHHH
Confidence 35667777777777776322222221 223346888886665554
No 219
>PF14044 NETI: NETI protein
Probab=20.73 E-value=1.3e+02 Score=22.15 Aligned_cols=27 Identities=15% Similarity=0.418 Sum_probs=22.0
Q ss_pred EEeCCCChHHHHHHHHHHcCCcee-----eEee
Q 017404 159 AIDINAKLDKELMNLILEKGHSRV-----PVYY 186 (372)
Q Consensus 159 tV~~d~tv~~ea~~~m~~~~~sri-----PV~d 186 (372)
.|.++.|++ +.++.|.+.||.-+ ||+.
T Consensus 3 eV~enETI~-~CL~RM~~eGY~PvrR~EkPiF~ 34 (57)
T PF14044_consen 3 EVEENETIS-DCLARMKKEGYMPVRRIEKPIFK 34 (57)
T ss_pred eccCCCcHH-HHHHHHHHcCCCceeeccccceE
Confidence 567899998 99999999998644 6654
No 220
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.28 E-value=3.4e+02 Score=21.10 Aligned_cols=43 Identities=9% Similarity=-0.001 Sum_probs=24.0
Q ss_pred hHhHHHHHHHHhhhhHHHHHHHHHHhHhCCCCccccCHHHHHHHHHh
Q 017404 71 TVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNL 117 (372)
Q Consensus 71 ~~a~~l~~~~~l~~Plv~~l~~i~~~l~g~~~~~~~s~eEL~~ll~~ 117 (372)
+++.|+-+|..+..|+-..+.+...+ .....+|.+|.+.+-++
T Consensus 5 fl~~plivf~ifVap~WL~lHY~sk~----~~~~gLs~~d~~~L~~L 47 (75)
T PF06667_consen 5 FLFVPLIVFMIFVAPIWLILHYRSKW----KSSQGLSEEDEQRLQEL 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCCCCHHHHHHHHHH
Confidence 45666666666666653333443322 23446788887666654
Done!