Query 017405
Match_columns 372
No_of_seqs 333 out of 2328
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:17:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 3E-19 6.6E-24 175.2 8.0 79 258-365 203-282 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 2.6E-15 5.6E-20 105.7 2.3 44 314-357 1-44 (44)
3 COG5540 RING-finger-containing 99.3 1.1E-12 2.5E-17 125.2 3.9 51 312-362 322-373 (374)
4 PF12678 zf-rbx1: RING-H2 zinc 99.3 3.4E-12 7.5E-17 99.7 3.9 45 313-357 19-73 (73)
5 PHA02929 N1R/p28-like protein; 99.2 4.5E-12 9.7E-17 119.7 4.3 50 312-361 173-227 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.1 4.9E-11 1.1E-15 116.8 6.4 53 309-361 283-345 (491)
7 KOG0317 Predicted E3 ubiquitin 99.0 2.1E-10 4.6E-15 109.4 4.6 57 305-364 231-287 (293)
8 PLN03208 E3 ubiquitin-protein 99.0 3.5E-10 7.7E-15 103.2 4.6 51 310-363 15-81 (193)
9 cd00162 RING RING-finger (Real 98.9 6.5E-10 1.4E-14 76.5 3.3 44 315-360 1-45 (45)
10 KOG0823 Predicted E3 ubiquitin 98.9 1.4E-09 3E-14 101.2 5.3 51 310-363 44-97 (230)
11 PF13920 zf-C3HC4_3: Zinc fing 98.9 6.7E-10 1.5E-14 80.2 2.3 47 313-362 2-49 (50)
12 PF13923 zf-C3HC4_2: Zinc fing 98.8 1.9E-09 4.2E-14 73.9 2.8 39 316-356 1-39 (39)
13 KOG0802 E3 ubiquitin ligase [P 98.8 1.8E-09 3.8E-14 113.8 2.9 57 308-364 286-344 (543)
14 PF12861 zf-Apc11: Anaphase-pr 98.8 4E-09 8.8E-14 84.2 4.2 51 312-362 20-83 (85)
15 PF14634 zf-RING_5: zinc-RING 98.7 1.5E-08 3.2E-13 71.4 3.0 44 315-358 1-44 (44)
16 smart00184 RING Ring finger. E 98.7 1.9E-08 4.1E-13 66.6 3.1 38 316-356 1-39 (39)
17 PF15227 zf-C3HC4_4: zinc fing 98.7 1.3E-08 2.9E-13 71.1 2.3 38 316-356 1-42 (42)
18 PF00097 zf-C3HC4: Zinc finger 98.6 1.4E-08 2.9E-13 70.0 1.9 39 316-356 1-41 (41)
19 smart00504 Ubox Modified RING 98.6 2.9E-08 6.3E-13 74.3 3.8 46 314-362 2-47 (63)
20 PHA02926 zinc finger-like prot 98.6 1.9E-08 4.2E-13 93.2 3.0 51 311-361 168-230 (242)
21 KOG1734 Predicted RING-contain 98.6 1.6E-08 3.4E-13 95.8 0.7 52 311-362 222-282 (328)
22 KOG0320 Predicted E3 ubiquitin 98.4 8.2E-08 1.8E-12 86.1 2.4 50 313-363 131-180 (187)
23 TIGR00599 rad18 DNA repair pro 98.4 1.3E-07 2.8E-12 95.6 2.9 48 312-362 25-72 (397)
24 COG5194 APC11 Component of SCF 98.4 2E-07 4.3E-12 73.1 3.1 48 316-363 34-83 (88)
25 smart00744 RINGv The RING-vari 98.4 2.4E-07 5.1E-12 66.9 2.9 42 315-357 1-49 (49)
26 KOG0828 Predicted E3 ubiquitin 98.2 4.4E-07 9.5E-12 92.1 2.1 50 313-362 571-635 (636)
27 COG5574 PEX10 RING-finger-cont 98.2 9.2E-07 2E-11 83.9 3.7 52 310-364 212-265 (271)
28 KOG1493 Anaphase-promoting com 98.2 3.6E-07 7.7E-12 71.1 0.5 49 313-361 20-81 (84)
29 KOG0804 Cytoplasmic Zn-finger 98.2 7.2E-07 1.6E-11 89.9 2.5 51 309-361 171-222 (493)
30 PF13445 zf-RING_UBOX: RING-ty 98.1 1.2E-06 2.7E-11 61.5 2.1 34 316-350 1-35 (43)
31 PF04564 U-box: U-box domain; 98.0 2.6E-06 5.6E-11 66.4 2.2 49 312-363 3-52 (73)
32 KOG2930 SCF ubiquitin ligase, 98.0 2.6E-06 5.6E-11 70.0 1.9 27 334-360 81-107 (114)
33 COG5219 Uncharacterized conser 98.0 1.4E-06 3E-11 94.0 0.5 48 311-361 1467-1523(1525)
34 PF11793 FANCL_C: FANCL C-term 98.0 1.7E-06 3.6E-11 67.1 -0.0 49 314-362 3-67 (70)
35 KOG0827 Predicted E3 ubiquitin 97.9 6.4E-06 1.4E-10 81.8 2.5 46 313-358 4-53 (465)
36 KOG2164 Predicted E3 ubiquitin 97.9 7.4E-06 1.6E-10 84.1 2.7 48 313-363 186-238 (513)
37 TIGR00570 cdk7 CDK-activating 97.8 1.1E-05 2.3E-10 79.0 3.3 53 312-364 2-57 (309)
38 KOG2177 Predicted E3 ubiquitin 97.8 5.8E-06 1.3E-10 77.3 1.2 44 311-357 11-54 (386)
39 KOG0287 Postreplication repair 97.7 1.3E-05 2.7E-10 78.6 1.3 47 314-363 24-70 (442)
40 KOG4445 Uncharacterized conser 97.7 1.4E-05 3.1E-10 77.1 1.3 51 314-364 116-189 (368)
41 KOG0825 PHD Zn-finger protein 97.5 1.6E-05 3.4E-10 84.7 -0.7 51 312-362 122-172 (1134)
42 KOG4265 Predicted E3 ubiquitin 97.5 9E-05 2E-09 73.3 4.5 52 309-363 286-338 (349)
43 COG5432 RAD18 RING-finger-cont 97.4 6.7E-05 1.4E-09 72.2 2.2 46 314-362 26-71 (391)
44 KOG0824 Predicted E3 ubiquitin 97.3 0.00011 2.3E-09 71.2 2.2 49 312-363 6-55 (324)
45 KOG1645 RING-finger-containing 97.2 0.0002 4.4E-09 71.8 3.2 46 314-359 5-54 (463)
46 KOG0311 Predicted E3 ubiquitin 97.2 5.6E-05 1.2E-09 74.5 -1.3 54 312-368 42-97 (381)
47 KOG1039 Predicted E3 ubiquitin 97.2 0.00019 4.2E-09 71.5 2.4 52 311-362 159-222 (344)
48 KOG3970 Predicted E3 ubiquitin 97.1 0.00042 9.1E-09 64.7 3.3 55 311-366 48-110 (299)
49 PF05883 Baculo_RING: Baculovi 97.0 0.00029 6.3E-09 61.0 1.3 35 313-347 26-66 (134)
50 PF14835 zf-RING_6: zf-RING of 96.9 0.00018 3.9E-09 54.6 -0.3 47 314-364 8-54 (65)
51 KOG4159 Predicted E3 ubiquitin 96.9 0.00048 1E-08 70.0 2.0 51 311-364 82-132 (398)
52 KOG1428 Inhibitor of type V ad 96.8 0.00092 2E-08 75.3 3.7 58 305-362 3478-3545(3738)
53 KOG1941 Acetylcholine receptor 96.7 0.00044 9.5E-09 69.1 0.6 46 313-358 365-413 (518)
54 KOG4172 Predicted E3 ubiquitin 96.7 0.00053 1.2E-08 50.3 0.5 46 313-361 7-54 (62)
55 KOG0801 Predicted E3 ubiquitin 96.6 0.00084 1.8E-08 59.7 1.1 36 305-340 169-204 (205)
56 KOG0297 TNF receptor-associate 96.4 0.0013 2.8E-08 67.1 1.5 51 311-364 19-70 (391)
57 PF11789 zf-Nse: Zinc-finger o 96.4 0.0014 3.1E-08 48.8 1.1 41 313-355 11-53 (57)
58 PHA02862 5L protein; Provision 96.3 0.0036 7.8E-08 54.8 3.1 45 313-361 2-53 (156)
59 PF12906 RINGv: RING-variant d 96.1 0.003 6.5E-08 45.1 1.5 40 316-356 1-47 (47)
60 KOG1785 Tyrosine kinase negati 95.7 0.0038 8.3E-08 62.7 1.1 45 315-362 371-417 (563)
61 PHA02825 LAP/PHD finger-like p 95.7 0.011 2.4E-07 52.7 3.8 47 311-361 6-59 (162)
62 COG5152 Uncharacterized conser 95.5 0.0048 1E-07 56.7 0.9 44 314-360 197-240 (259)
63 PF10367 Vps39_2: Vacuolar sor 95.5 0.0051 1.1E-07 50.3 0.8 33 311-344 76-108 (109)
64 KOG1814 Predicted E3 ubiquitin 95.4 0.0072 1.6E-07 61.0 1.9 46 313-358 184-237 (445)
65 KOG0978 E3 ubiquitin ligase in 95.4 0.0041 8.9E-08 67.0 0.0 49 313-364 643-692 (698)
66 KOG2879 Predicted E3 ubiquitin 95.4 0.017 3.6E-07 55.7 4.0 54 308-363 234-289 (298)
67 KOG1002 Nucleotide excision re 95.0 0.0093 2E-07 61.9 1.2 52 312-366 535-591 (791)
68 PF14570 zf-RING_4: RING/Ubox 94.7 0.016 3.5E-07 41.6 1.4 44 316-360 1-47 (48)
69 KOG1813 Predicted E3 ubiquitin 94.6 0.011 2.5E-07 57.3 0.6 46 314-362 242-287 (313)
70 KOG2660 Locus-specific chromos 94.6 0.0096 2.1E-07 58.6 0.0 49 312-362 14-62 (331)
71 KOG1952 Transcription factor N 94.5 0.024 5.2E-07 61.8 2.6 51 309-359 187-245 (950)
72 KOG0827 Predicted E3 ubiquitin 94.2 0.0028 6.2E-08 63.4 -4.6 52 313-364 196-248 (465)
73 KOG0826 Predicted E3 ubiquitin 94.2 0.057 1.2E-06 53.3 4.3 49 309-360 296-345 (357)
74 KOG4692 Predicted E3 ubiquitin 93.9 0.047 1E-06 54.3 3.1 48 311-361 420-467 (489)
75 KOG1571 Predicted E3 ubiquitin 93.8 0.041 9E-07 54.8 2.7 45 311-361 303-347 (355)
76 PHA03096 p28-like protein; Pro 93.6 0.033 7.2E-07 54.4 1.6 36 314-349 179-219 (284)
77 KOG3039 Uncharacterized conser 93.2 0.1 2.2E-06 49.7 4.1 53 312-364 220-273 (303)
78 PF07800 DUF1644: Protein of u 92.7 0.1 2.2E-06 46.6 3.1 34 312-348 1-47 (162)
79 KOG1609 Protein involved in mR 92.4 0.12 2.5E-06 50.2 3.4 50 313-362 78-135 (323)
80 PF14447 Prok-RING_4: Prokaryo 92.1 0.095 2.1E-06 38.7 1.8 45 314-363 8-52 (55)
81 COG5236 Uncharacterized conser 91.7 0.26 5.7E-06 49.1 4.9 48 310-360 58-107 (493)
82 PF04641 Rtf2: Rtf2 RING-finge 91.2 0.22 4.7E-06 48.0 3.8 52 311-363 111-163 (260)
83 KOG1940 Zn-finger protein [Gen 91.1 0.082 1.8E-06 51.4 0.7 45 314-358 159-204 (276)
84 KOG4185 Predicted E3 ubiquitin 90.9 0.16 3.6E-06 49.3 2.7 47 314-360 4-54 (296)
85 COG5222 Uncharacterized conser 90.3 0.14 3.1E-06 50.0 1.5 45 314-361 275-322 (427)
86 PF10272 Tmpp129: Putative tra 89.6 0.61 1.3E-05 47.1 5.5 29 334-362 311-352 (358)
87 KOG2034 Vacuolar sorting prote 89.0 0.18 4E-06 55.5 1.4 37 310-347 814-850 (911)
88 KOG3268 Predicted E3 ubiquitin 88.7 0.26 5.7E-06 44.8 1.9 35 331-365 187-232 (234)
89 COG5183 SSM4 Protein involved 88.2 0.4 8.8E-06 52.4 3.3 55 309-364 8-69 (1175)
90 KOG4275 Predicted E3 ubiquitin 88.2 0.095 2.1E-06 51.0 -1.2 43 313-362 300-343 (350)
91 PF08746 zf-RING-like: RING-li 88.1 0.17 3.8E-06 35.4 0.3 41 316-356 1-43 (43)
92 KOG2932 E3 ubiquitin ligase in 88.0 0.19 4E-06 49.4 0.6 44 315-362 92-135 (389)
93 KOG2114 Vacuolar assembly/sort 87.8 0.29 6.3E-06 53.8 1.9 42 314-360 841-882 (933)
94 PF11023 DUF2614: Protein of u 87.6 5.1 0.00011 33.9 8.8 24 345-368 80-103 (114)
95 KOG1001 Helicase-like transcri 86.6 0.24 5.3E-06 53.9 0.6 47 314-364 455-503 (674)
96 KOG4362 Transcriptional regula 85.1 0.23 5E-06 53.6 -0.5 50 313-365 21-73 (684)
97 PF03854 zf-P11: P-11 zinc fin 84.7 0.4 8.7E-06 34.4 0.7 32 332-363 16-48 (50)
98 PF14446 Prok-RING_1: Prokaryo 84.5 1.2 2.5E-05 32.9 3.1 38 314-355 6-44 (54)
99 PF05290 Baculo_IE-1: Baculovi 82.7 1 2.2E-05 39.2 2.5 48 314-364 81-135 (140)
100 KOG3161 Predicted E3 ubiquitin 82.6 0.38 8.2E-06 51.4 -0.2 44 314-360 12-56 (861)
101 KOG0802 E3 ubiquitin ligase [P 81.2 1.2 2.7E-05 47.3 3.1 51 308-365 474-524 (543)
102 KOG0298 DEAD box-containing he 80.8 0.46 1E-05 54.4 -0.3 45 313-359 1153-1197(1394)
103 COG5175 MOT2 Transcriptional r 80.5 1.1 2.5E-05 44.6 2.3 51 312-362 13-65 (480)
104 KOG3002 Zn finger protein [Gen 79.3 1.1 2.3E-05 44.3 1.7 45 311-362 46-92 (299)
105 KOG0825 PHD Zn-finger protein 78.7 1.7 3.7E-05 47.7 3.1 50 312-361 95-154 (1134)
106 KOG1829 Uncharacterized conser 78.7 0.79 1.7E-05 48.9 0.6 40 314-356 512-556 (580)
107 KOG4367 Predicted Zn-finger pr 76.7 1.2 2.7E-05 45.6 1.4 35 312-349 3-37 (699)
108 KOG0309 Conserved WD40 repeat- 75.8 1.9 4.2E-05 47.0 2.5 40 315-355 1030-1069(1081)
109 KOG3899 Uncharacterized conser 75.5 1.5 3.3E-05 42.9 1.6 30 334-363 325-367 (381)
110 KOG3053 Uncharacterized conser 73.1 2.4 5.2E-05 40.8 2.2 49 313-361 20-82 (293)
111 KOG3005 GIY-YIG type nuclease 69.2 2.3 5E-05 41.2 1.1 47 313-359 182-241 (276)
112 COG5524 Bacteriorhodopsin [Gen 67.3 27 0.00058 34.2 8.0 100 73-201 104-214 (285)
113 KOG1815 Predicted E3 ubiquitin 66.0 3.2 7E-05 43.0 1.6 37 311-349 68-104 (444)
114 KOG1100 Predicted E3 ubiquitin 62.4 4.1 8.8E-05 38.2 1.4 39 316-361 161-200 (207)
115 KOG0269 WD40 repeat-containing 61.9 6.7 0.00015 43.0 3.1 45 312-357 778-824 (839)
116 KOG1812 Predicted E3 ubiquitin 61.8 2.9 6.2E-05 42.7 0.3 37 313-349 146-183 (384)
117 PRK02935 hypothetical protein; 61.8 31 0.00068 28.9 6.3 54 174-239 6-62 (110)
118 KOG2817 Predicted E3 ubiquitin 60.8 7.5 0.00016 39.6 3.0 48 313-360 334-384 (394)
119 PF02891 zf-MIZ: MIZ/SP-RING z 59.1 7.5 0.00016 28.0 2.0 42 315-359 4-50 (50)
120 COG5220 TFB3 Cdk activating ki 58.5 5.1 0.00011 38.3 1.3 47 312-358 9-61 (314)
121 PF13901 DUF4206: Domain of un 57.7 6.2 0.00014 36.6 1.8 40 314-358 153-197 (202)
122 KOG2066 Vacuolar assembly/sort 56.5 4.2 9.1E-05 44.7 0.4 44 312-356 783-830 (846)
123 KOG4739 Uncharacterized protei 54.3 7 0.00015 37.2 1.5 33 315-348 5-37 (233)
124 smart00249 PHD PHD zinc finger 53.8 6.9 0.00015 26.1 1.0 30 316-345 2-31 (47)
125 COG3671 Predicted membrane pro 50.2 33 0.00072 29.4 4.7 48 212-259 68-115 (125)
126 smart00132 LIM Zinc-binding do 47.5 16 0.00035 23.4 2.1 36 316-360 2-37 (39)
127 KOG1812 Predicted E3 ubiquitin 42.8 11 0.00024 38.5 0.9 44 314-357 307-352 (384)
128 KOG3800 Predicted E3 ubiquitin 42.1 16 0.00035 35.9 1.9 42 323-364 11-54 (300)
129 KOG3039 Uncharacterized conser 41.3 22 0.00047 34.3 2.5 34 312-348 42-75 (303)
130 PF15048 OSTbeta: Organic solu 39.7 21 0.00046 30.8 2.0 24 75-106 32-55 (125)
131 KOG4718 Non-SMC (structural ma 39.2 13 0.00029 34.9 0.9 43 312-356 180-222 (235)
132 PF04423 Rad50_zn_hook: Rad50 36.8 11 0.00024 27.2 -0.1 13 351-363 21-33 (54)
133 PF04272 Phospholamban: Phosph 35.3 40 0.00087 24.0 2.5 14 227-240 32-45 (52)
134 PF13717 zinc_ribbon_4: zinc-r 34.2 19 0.0004 24.1 0.7 26 314-339 3-36 (36)
135 KOG2068 MOT2 transcription fac 33.6 33 0.00072 34.3 2.6 50 313-363 249-300 (327)
136 PRK11827 hypothetical protein; 33.6 15 0.00033 27.7 0.2 20 344-363 2-21 (60)
137 TIGR01294 P_lamban phospholamb 33.3 46 0.00099 23.7 2.5 13 228-240 33-45 (52)
138 COG5627 MMS21 DNA repair prote 32.6 22 0.00048 34.0 1.2 40 313-354 189-230 (275)
139 PF13719 zinc_ribbon_5: zinc-r 32.4 24 0.00053 23.6 1.0 26 314-339 3-36 (37)
140 cd00350 rubredoxin_like Rubred 31.9 30 0.00066 22.5 1.4 10 349-358 16-25 (33)
141 PF07649 C1_3: C1-like domain; 31.7 26 0.00056 22.2 1.0 29 315-343 2-30 (30)
142 PF06906 DUF1272: Protein of u 31.7 70 0.0015 23.9 3.4 46 314-363 6-54 (57)
143 PF05715 zf-piccolo: Piccolo Z 31.2 31 0.00067 26.0 1.5 13 350-362 2-14 (61)
144 PF00628 PHD: PHD-finger; Int 30.9 14 0.00031 25.9 -0.3 44 315-358 1-50 (51)
145 PRK10633 hypothetical protein; 30.0 1.7E+02 0.0037 23.3 5.6 34 179-214 13-46 (80)
146 PRK05978 hypothetical protein; 29.8 31 0.00068 30.7 1.6 25 336-365 43-67 (148)
147 KOG2927 Membrane component of 28.7 1.9E+02 0.004 29.5 6.9 15 186-200 242-259 (372)
148 PF06844 DUF1244: Protein of u 28.7 34 0.00073 26.3 1.4 12 337-348 11-22 (68)
149 KOG2041 WD40 repeat protein [G 28.5 34 0.00074 37.8 1.9 49 309-361 1127-1185(1189)
150 KOG1729 FYVE finger containing 28.4 11 0.00023 37.2 -1.7 37 315-351 216-252 (288)
151 PF14169 YdjO: Cold-inducible 28.3 27 0.00059 26.2 0.8 14 350-363 39-52 (59)
152 PF11712 Vma12: Endoplasmic re 28.0 1.5E+02 0.0033 25.6 5.7 26 173-198 79-104 (142)
153 PF10235 Cript: Microtubule-as 27.0 79 0.0017 25.8 3.3 46 309-366 40-85 (90)
154 PF06937 EURL: EURL protein; 26.0 63 0.0014 31.5 3.0 43 314-356 31-76 (285)
155 KOG4452 Predicted membrane pro 25.1 1.5E+02 0.0033 22.9 4.4 12 183-194 27-38 (79)
156 KOG3415 Putative Rab5-interact 25.1 66 0.0014 27.5 2.6 102 62-194 19-122 (129)
157 PF12326 EOS1: N-glycosylation 24.1 93 0.002 27.7 3.5 43 96-141 51-94 (148)
158 PF00412 LIM: LIM domain; Int 23.9 42 0.0009 23.8 1.1 39 316-363 1-39 (58)
159 PF02985 HEAT: HEAT repeat; I 23.7 49 0.0011 20.8 1.3 18 56-73 9-26 (31)
160 PF07975 C1_4: TFIIH C1-like d 23.6 51 0.0011 24.0 1.5 41 316-357 2-50 (51)
161 PF10856 DUF2678: Protein of u 22.4 96 0.0021 26.5 3.1 56 72-136 26-82 (118)
162 TIGR01873 cas_CT1978 CRISPR-as 22.2 44 0.00096 27.1 1.0 39 35-74 10-48 (87)
163 KOG3842 Adaptor protein Pellin 22.1 72 0.0016 31.9 2.6 50 312-361 340-414 (429)
164 PF04505 Dispanin: Interferon- 22.0 33 0.00072 27.2 0.3 14 243-256 28-42 (82)
165 PF05478 Prominin: Prominin; 21.3 1.1E+02 0.0024 34.3 4.3 12 234-245 106-117 (806)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3e-19 Score=175.18 Aligned_cols=79 Identities=38% Similarity=0.822 Sum_probs=68.5
Q ss_pred ccCCCCHHHHhcCCceEeeeccCcccccCCCCCCCCccccccCCCCCcccccCCCCceeeeecccccCCCceEEeCCCCc
Q 017405 258 EREGATEEEIDRLPKFKFSRIDGLEKVNGEIQEPFGGIMIECDTDMPMEHVISEDDAECCICLSAYDDGTELRELPCLHH 337 (372)
Q Consensus 258 ~~~g~s~~~I~~Lp~~k~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~~~~ed~eC~ICL~~y~~~d~lr~LPC~H~ 337 (372)
+.+++.++.+.++|..+|+..+..++ . ..|+|||++|+.||++|.|||+|.
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~----------------------------~-~~CaIClEdY~~GdklRiLPC~H~ 253 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDA----------------------------T-DTCAICLEDYEKGDKLRILPCSHK 253 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCC----------------------------C-ceEEEeecccccCCeeeEecCCCc
Confidence 45688999999999999988765421 1 589999999999999999999999
Q ss_pred ccHHHHHHHHhcCCC-CccccccccccCC
Q 017405 338 FHCSCLDKWLYINST-CPLCKFNILKMSN 365 (372)
Q Consensus 338 FH~~CId~WL~~~~t-CPlCR~~I~~~~~ 365 (372)
||..|||+||..+.+ ||+||+++.+...
T Consensus 254 FH~~CIDpWL~~~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 254 FHVNCIDPWLTQTRTFCPVCKRDIRTDSG 282 (348)
T ss_pred hhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence 999999999998755 9999999976553
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.53 E-value=2.6e-15 Score=105.68 Aligned_cols=44 Identities=48% Similarity=1.205 Sum_probs=40.9
Q ss_pred ceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCcccc
Q 017405 314 AECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCK 357 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 357 (372)
++|+||+++|++++.++.|+|+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.1e-12 Score=125.23 Aligned_cols=51 Identities=43% Similarity=1.040 Sum_probs=47.2
Q ss_pred CCceeeeecccccCCCceEEeCCCCcccHHHHHHHHh-cCCCCccccccccc
Q 017405 312 DDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLY-INSTCPLCKFNILK 362 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~ 362 (372)
...+|+|||++|-.+|.++.|||+|.||..||++|+. -+..||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3479999999999999999999999999999999998 57789999999976
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.26 E-value=3.4e-12 Score=99.67 Aligned_cols=45 Identities=42% Similarity=0.988 Sum_probs=36.9
Q ss_pred CceeeeecccccCC----------CceEEeCCCCcccHHHHHHHHhcCCCCcccc
Q 017405 313 DAECCICLSAYDDG----------TELRELPCLHHFHCSCLDKWLYINSTCPLCK 357 (372)
Q Consensus 313 d~eC~ICL~~y~~~----------d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 357 (372)
++.|+||++.|.+. -.+...+|+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999432 3556668999999999999999999999997
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.24 E-value=4.5e-12 Score=119.70 Aligned_cols=50 Identities=32% Similarity=0.748 Sum_probs=41.8
Q ss_pred CCceeeeecccccCCCc----eEE-eCCCCcccHHHHHHHHhcCCCCcccccccc
Q 017405 312 DDAECCICLSAYDDGTE----LRE-LPCLHHFHCSCLDKWLYINSTCPLCKFNIL 361 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~----lr~-LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 361 (372)
.+.+|+||++.+.+++. +.. ++|+|.||.+||.+|++.+.+||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 45799999999876531 233 469999999999999999999999999875
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.9e-11 Score=116.83 Aligned_cols=53 Identities=32% Similarity=0.910 Sum_probs=44.5
Q ss_pred cCCCCceeeeeccc-ccCCC---------ceEEeCCCCcccHHHHHHHHhcCCCCcccccccc
Q 017405 309 ISEDDAECCICLSA-YDDGT---------ELRELPCLHHFHCSCLDKWLYINSTCPLCKFNIL 361 (372)
Q Consensus 309 ~~~ed~eC~ICL~~-y~~~d---------~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 361 (372)
+..+|..|.||+++ ++.+. +-..|||||.||.+|++.|+++.++||+||.++.
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 34567899999999 55441 3368999999999999999999999999999953
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.1e-10 Score=109.44 Aligned_cols=57 Identities=28% Similarity=0.638 Sum_probs=49.6
Q ss_pred cccccCCCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccccccC
Q 017405 305 MEHVISEDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILKMS 364 (372)
Q Consensus 305 ~e~~~~~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 364 (372)
.+..+.+.+..|.+||+..+++ -.+||||+||+.||..|+..+..||+||....+..
T Consensus 231 ~~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 3445566778999999999888 78999999999999999999999999999887643
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.99 E-value=3.5e-10 Score=103.20 Aligned_cols=51 Identities=35% Similarity=0.787 Sum_probs=42.8
Q ss_pred CCCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhc----------------CCCCcccccccccc
Q 017405 310 SEDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYI----------------NSTCPLCKFNILKM 363 (372)
Q Consensus 310 ~~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~----------------~~tCPlCR~~I~~~ 363 (372)
..++.+|+||++.++++ ..++|+|.||+.||.+|+.. ...||+||.++...
T Consensus 15 ~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 44568999999999887 67899999999999999852 24799999988653
No 9
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.94 E-value=6.5e-10 Score=76.47 Aligned_cols=44 Identities=50% Similarity=1.056 Sum_probs=36.8
Q ss_pred eeeeecccccCCCceEEeCCCCcccHHHHHHHHhc-CCCCccccccc
Q 017405 315 ECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYI-NSTCPLCKFNI 360 (372)
Q Consensus 315 eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I 360 (372)
+|+||++.+ .+.+...+|+|.||.+|+++|++. +..||.||.++
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 334555669999999999999997 77899999764
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.4e-09 Score=101.17 Aligned_cols=51 Identities=31% Similarity=0.621 Sum_probs=43.1
Q ss_pred CCCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcC---CCCcccccccccc
Q 017405 310 SEDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYIN---STCPLCKFNILKM 363 (372)
Q Consensus 310 ~~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~I~~~ 363 (372)
.....+|.|||+.-+|+ +...|||.||+.||.+||+.. ..||+||.+|...
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 34567999999998888 677899999999999999863 4599999988653
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.90 E-value=6.7e-10 Score=80.18 Aligned_cols=47 Identities=36% Similarity=0.762 Sum_probs=40.2
Q ss_pred CceeeeecccccCCCceEEeCCCCc-ccHHHHHHHHhcCCCCccccccccc
Q 017405 313 DAECCICLSAYDDGTELRELPCLHH-FHCSCLDKWLYINSTCPLCKFNILK 362 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~ 362 (372)
+..|.||++...+ +..+||+|. |+.+|+.+|++.+..||+||++|..
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4689999998655 588999999 9999999999999999999998853
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.84 E-value=1.9e-09 Score=73.85 Aligned_cols=39 Identities=41% Similarity=0.962 Sum_probs=33.8
Q ss_pred eeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccc
Q 017405 316 CCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLC 356 (372)
Q Consensus 316 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlC 356 (372)
|+||++.+.+ .+..++|||.|+.+||.+|++.+..||.|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999887 45688999999999999999999999998
No 13
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.8e-09 Score=113.80 Aligned_cols=57 Identities=35% Similarity=0.779 Sum_probs=49.1
Q ss_pred ccCCCCceeeeecccccCCCc--eEEeCCCCcccHHHHHHHHhcCCCCccccccccccC
Q 017405 308 VISEDDAECCICLSAYDDGTE--LRELPCLHHFHCSCLDKWLYINSTCPLCKFNILKMS 364 (372)
Q Consensus 308 ~~~~ed~eC~ICL~~y~~~d~--lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 364 (372)
.....+..|+||++.+..+++ ...|||+|.||..|+.+|+++.++||.||..+....
T Consensus 286 ~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 286 GLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYV 344 (543)
T ss_pred hhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhccc
Confidence 345568999999999999765 688999999999999999999999999999554443
No 14
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.81 E-value=4e-09 Score=84.18 Aligned_cols=51 Identities=35% Similarity=0.780 Sum_probs=40.2
Q ss_pred CCceeeeecccccC--------CC--ceEEeCCCCcccHHHHHHHHhc---CCCCccccccccc
Q 017405 312 DDAECCICLSAYDD--------GT--ELRELPCLHHFHCSCLDKWLYI---NSTCPLCKFNILK 362 (372)
Q Consensus 312 ed~eC~ICL~~y~~--------~d--~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I~~ 362 (372)
+|+.|.||...|+. || .+..-.|+|.||..||.+|+.. +..||+||++..-
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 47899999999982 22 4444459999999999999985 4679999987643
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.67 E-value=1.5e-08 Score=71.36 Aligned_cols=44 Identities=32% Similarity=0.707 Sum_probs=39.3
Q ss_pred eeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccc
Q 017405 315 ECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKF 358 (372)
Q Consensus 315 eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 358 (372)
+|.||.+.|.+....+.++|+|.|+.+|+++.......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999977778899999999999999999966778999985
No 16
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.66 E-value=1.9e-08 Score=66.64 Aligned_cols=38 Identities=50% Similarity=1.050 Sum_probs=32.7
Q ss_pred eeeecccccCCCceEEeCCCCcccHHHHHHHHh-cCCCCccc
Q 017405 316 CCICLSAYDDGTELRELPCLHHFHCSCLDKWLY-INSTCPLC 356 (372)
Q Consensus 316 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-~~~tCPlC 356 (372)
|+||++. ......+||+|.||.+|+++|++ .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899988 34558899999999999999998 66779987
No 17
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.65 E-value=1.3e-08 Score=71.10 Aligned_cols=38 Identities=42% Similarity=0.917 Sum_probs=30.7
Q ss_pred eeeecccccCCCceEEeCCCCcccHHHHHHHHhcC----CCCccc
Q 017405 316 CCICLSAYDDGTELRELPCLHHFHCSCLDKWLYIN----STCPLC 356 (372)
Q Consensus 316 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~----~tCPlC 356 (372)
|+||++.|+++ ..|+|||.|+..||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 899999999999999999754 369988
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.63 E-value=1.4e-08 Score=70.01 Aligned_cols=39 Identities=49% Similarity=1.081 Sum_probs=34.5
Q ss_pred eeeecccccCCCceEEeCCCCcccHHHHHHHHh--cCCCCccc
Q 017405 316 CCICLSAYDDGTELRELPCLHHFHCSCLDKWLY--INSTCPLC 356 (372)
Q Consensus 316 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~--~~~tCPlC 356 (372)
|+||++.++++. +.++|+|.|+.+||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988873 5889999999999999999 45679998
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.63 E-value=2.9e-08 Score=74.29 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=41.7
Q ss_pred ceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccccc
Q 017405 314 AECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILK 362 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 362 (372)
..|+||.+.++++ ..+||||.|+..||.+|++.+.+||.|+.++..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4699999999998 678999999999999999999999999988754
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=98.61 E-value=1.9e-08 Score=93.19 Aligned_cols=51 Identities=25% Similarity=0.681 Sum_probs=37.9
Q ss_pred CCCceeeeecccccCC-----CceEEe-CCCCcccHHHHHHHHhcC------CCCcccccccc
Q 017405 311 EDDAECCICLSAYDDG-----TELREL-PCLHHFHCSCLDKWLYIN------STCPLCKFNIL 361 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~-----d~lr~L-PC~H~FH~~CId~WL~~~------~tCPlCR~~I~ 361 (372)
..+.+|+||++..-+. ...-.| +|+|.||..||++|-+.+ .+||+||....
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3568999999886332 112244 599999999999999753 35999998664
No 21
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.6e-08 Score=95.79 Aligned_cols=52 Identities=31% Similarity=0.657 Sum_probs=44.7
Q ss_pred CCCceeeeecccccCCC-------ceEEeCCCCcccHHHHHHHHh--cCCCCccccccccc
Q 017405 311 EDDAECCICLSAYDDGT-------ELRELPCLHHFHCSCLDKWLY--INSTCPLCKFNILK 362 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d-------~lr~LPC~H~FH~~CId~WL~--~~~tCPlCR~~I~~ 362 (372)
.+|..|+||-..+.... +..+|.|+|.||..||+.|.- ++++||-||..+..
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 46789999999997665 788999999999999999964 67899999987653
No 22
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.2e-08 Score=86.12 Aligned_cols=50 Identities=26% Similarity=0.574 Sum_probs=42.8
Q ss_pred CceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 017405 313 DAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILKM 363 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 363 (372)
-..|+|||+.|.+... .-..|||+||++||+.-++....||+|++.|.++
T Consensus 131 ~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 4679999999988633 2467999999999999999999999999877654
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=1.3e-07 Score=95.62 Aligned_cols=48 Identities=27% Similarity=0.610 Sum_probs=43.1
Q ss_pred CCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccccc
Q 017405 312 DDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILK 362 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 362 (372)
....|+||++.|.++ ..+||+|.||..||..|+.....||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 457899999999887 578999999999999999988899999998764
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.40 E-value=2e-07 Score=73.08 Aligned_cols=48 Identities=29% Similarity=0.622 Sum_probs=34.7
Q ss_pred eeeecccccCCCceEEe--CCCCcccHHHHHHHHhcCCCCcccccccccc
Q 017405 316 CCICLSAYDDGTELREL--PCLHHFHCSCLDKWLYINSTCPLCKFNILKM 363 (372)
Q Consensus 316 C~ICL~~y~~~d~lr~L--PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 363 (372)
|+-|......+++.... -|+|.||..||.+||..+..||++++...-.
T Consensus 34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 33444444445543322 3999999999999999999999999876543
No 25
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.38 E-value=2.4e-07 Score=66.93 Aligned_cols=42 Identities=33% Similarity=0.794 Sum_probs=33.7
Q ss_pred eeeeecccccCCCceEEeCCC-----CcccHHHHHHHHhcC--CCCcccc
Q 017405 315 ECCICLSAYDDGTELRELPCL-----HHFHCSCLDKWLYIN--STCPLCK 357 (372)
Q Consensus 315 eC~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~~~--~tCPlCR 357 (372)
.|-||++ .+++++....||. |.+|.+|+++|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889999 4455555689986 999999999999654 4899995
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.4e-07 Score=92.14 Aligned_cols=50 Identities=32% Similarity=0.847 Sum_probs=40.1
Q ss_pred CceeeeecccccC---CC-----------ceEEeCCCCcccHHHHHHHHh-cCCCCccccccccc
Q 017405 313 DAECCICLSAYDD---GT-----------ELRELPCLHHFHCSCLDKWLY-INSTCPLCKFNILK 362 (372)
Q Consensus 313 d~eC~ICL~~y~~---~d-----------~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~ 362 (372)
...|+||+.+.+- +. .....||+|+||..|+.+|.. .+-.||+||.++++
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3689999998752 11 233569999999999999999 56689999999875
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=9.2e-07 Score=83.91 Aligned_cols=52 Identities=31% Similarity=0.641 Sum_probs=45.1
Q ss_pred CCCCceeeeecccccCCCceEEeCCCCcccHHHHHH-HHhcCCC-CccccccccccC
Q 017405 310 SEDDAECCICLSAYDDGTELRELPCLHHFHCSCLDK-WLYINST-CPLCKFNILKMS 364 (372)
Q Consensus 310 ~~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~-WL~~~~t-CPlCR~~I~~~~ 364 (372)
...|..|.||++..++. ..+||||+|++.||-. |-+.+.. ||+||+.+.++.
T Consensus 212 p~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 212 PLADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 35688999999998887 7889999999999999 9888777 999998876654
No 28
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.6e-07 Score=71.08 Aligned_cols=49 Identities=37% Similarity=0.892 Sum_probs=36.4
Q ss_pred CceeeeecccccC--------CCceE-Ee-CCCCcccHHHHHHHHhcC---CCCcccccccc
Q 017405 313 DAECCICLSAYDD--------GTELR-EL-PCLHHFHCSCLDKWLYIN---STCPLCKFNIL 361 (372)
Q Consensus 313 d~eC~ICL~~y~~--------~d~lr-~L-PC~H~FH~~CId~WL~~~---~tCPlCR~~I~ 361 (372)
+.+|.||...|+. ||..- .+ -|.|.||..||.+|+... ..||+||++..
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4589999999973 22211 22 299999999999999754 45999998754
No 29
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.19 E-value=7.2e-07 Score=89.86 Aligned_cols=51 Identities=37% Similarity=0.897 Sum_probs=42.8
Q ss_pred cCCCCceeeeecccccCCC-ceEEeCCCCcccHHHHHHHHhcCCCCcccccccc
Q 017405 309 ISEDDAECCICLSAYDDGT-ELRELPCLHHFHCSCLDKWLYINSTCPLCKFNIL 361 (372)
Q Consensus 309 ~~~ed~eC~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 361 (372)
...|-.+|++||+.+++.. .++...|+|.||..|+.+|- ..+||+||+-..
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 3446789999999998774 67778899999999999997 567999998554
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.14 E-value=1.2e-06 Score=61.52 Aligned_cols=34 Identities=32% Similarity=0.588 Sum_probs=21.7
Q ss_pred eeeecccccCCC-ceEEeCCCCcccHHHHHHHHhcC
Q 017405 316 CCICLSAYDDGT-ELRELPCLHHFHCSCLDKWLYIN 350 (372)
Q Consensus 316 C~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~ 350 (372)
|+||.+ |.+++ .-+.|||||.|+.+||+++++.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 86643 44779999999999999999854
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.02 E-value=2.6e-06 Score=66.41 Aligned_cols=49 Identities=24% Similarity=0.385 Sum_probs=39.5
Q ss_pred CCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhc-CCCCcccccccccc
Q 017405 312 DDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYI-NSTCPLCKFNILKM 363 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~ 363 (372)
+...|+|+.+-+.++ ..+||||.|...||.+|++. +.+||+|+.++...
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 346899999999999 88999999999999999998 88999999888754
No 32
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.6e-06 Score=70.01 Aligned_cols=27 Identities=37% Similarity=0.942 Sum_probs=25.2
Q ss_pred CCCcccHHHHHHHHhcCCCCccccccc
Q 017405 334 CLHHFHCSCLDKWLYINSTCPLCKFNI 360 (372)
Q Consensus 334 C~H~FH~~CId~WL~~~~tCPlCR~~I 360 (372)
|+|.||..||.+||+.++.||||.++=
T Consensus 81 CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 81 CNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred cchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 999999999999999999999997653
No 33
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.00 E-value=1.4e-06 Score=93.99 Aligned_cols=48 Identities=46% Similarity=1.007 Sum_probs=39.1
Q ss_pred CCCceeeeeccccc-CCCceEEeC------CCCcccHHHHHHHHhc--CCCCcccccccc
Q 017405 311 EDDAECCICLSAYD-DGTELRELP------CLHHFHCSCLDKWLYI--NSTCPLCKFNIL 361 (372)
Q Consensus 311 ~ed~eC~ICL~~y~-~~d~lr~LP------C~H~FH~~CId~WL~~--~~tCPlCR~~I~ 361 (372)
+...||+||..-.. .+ |.|| |.|-||..|+.||++. +++||+||.+|+
T Consensus 1467 sG~eECaICYsvL~~vd---r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVD---RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHh---ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45679999998877 33 5555 7899999999999986 457999998875
No 34
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.95 E-value=1.7e-06 Score=67.11 Aligned_cols=49 Identities=35% Similarity=0.732 Sum_probs=24.4
Q ss_pred ceeeeecccccCCCceEEe-----CCCCcccHHHHHHHHhc-----------CCCCccccccccc
Q 017405 314 AECCICLSAYDDGTELREL-----PCLHHFHCSCLDKWLYI-----------NSTCPLCKFNILK 362 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~L-----PC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~~ 362 (372)
.+|.||.+...+++++-.+ .|++.||..|+.+||.. ..+||.|+.+|.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 5899999987744433222 38899999999999963 1249999998864
No 35
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=6.4e-06 Score=81.77 Aligned_cols=46 Identities=39% Similarity=0.931 Sum_probs=37.2
Q ss_pred CceeeeecccccCCCceEEeC-CCCcccHHHHHHHHhc---CCCCccccc
Q 017405 313 DAECCICLSAYDDGTELRELP-CLHHFHCSCLDKWLYI---NSTCPLCKF 358 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~---~~tCPlCR~ 358 (372)
.++|.||.+-+....++--.. |||+||..|+.+|+.. +.+||.||-
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 379999966666666676666 9999999999999985 347999993
No 36
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=7.4e-06 Score=84.05 Aligned_cols=48 Identities=27% Similarity=0.603 Sum_probs=39.1
Q ss_pred CceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcC-----CCCcccccccccc
Q 017405 313 DAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYIN-----STCPLCKFNILKM 363 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~-----~tCPlCR~~I~~~ 363 (372)
+..|+|||+...-. ..+.|||+||..||-+.+... ..||+|+..|..+
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 88999999997766 344499999999999987644 4699999888664
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=1.1e-05 Score=79.01 Aligned_cols=53 Identities=28% Similarity=0.548 Sum_probs=39.7
Q ss_pred CCceeeeeccc-ccCCC-ceEEeCCCCcccHHHHHHHHh-cCCCCccccccccccC
Q 017405 312 DDAECCICLSA-YDDGT-ELRELPCLHHFHCSCLDKWLY-INSTCPLCKFNILKMS 364 (372)
Q Consensus 312 ed~eC~ICL~~-y~~~d-~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~ 364 (372)
++..|++|..+ |-.++ .+..-+|||.||..||+..+. ....||.|+.++.+.+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 34689999996 55544 233337999999999999654 4567999999887654
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=5.8e-06 Score=77.32 Aligned_cols=44 Identities=32% Similarity=0.787 Sum_probs=39.9
Q ss_pred CCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCcccc
Q 017405 311 EDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCK 357 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 357 (372)
.+...|+||++.|.++ ..|||+|.|+..|+..++.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 4567899999999999 8899999999999999998556799999
No 39
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.70 E-value=1.3e-05 Score=78.56 Aligned_cols=47 Identities=28% Similarity=0.701 Sum_probs=43.4
Q ss_pred ceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 017405 314 AECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILKM 363 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 363 (372)
..|.||.+-|..+ ...||+|.||.-||.+.|..+..||.|+.++.+.
T Consensus 24 LRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 24 LRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence 5799999999999 8899999999999999999999999999887653
No 40
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.68 E-value=1.4e-05 Score=77.07 Aligned_cols=51 Identities=27% Similarity=0.748 Sum_probs=43.6
Q ss_pred ceeeeecccccCCCceEEeCCCCcccHHHHHHHHh-----------------------cCCCCccccccccccC
Q 017405 314 AECCICLSAYDDGTELRELPCLHHFHCSCLDKWLY-----------------------INSTCPLCKFNILKMS 364 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-----------------------~~~tCPlCR~~I~~~~ 364 (372)
..|.|||..|.+++++...+|.|.||..|+...|. ..+.||+||..|....
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 58999999999999999999999999999987761 2346999999886543
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.53 E-value=1.6e-05 Score=84.74 Aligned_cols=51 Identities=25% Similarity=0.475 Sum_probs=45.5
Q ss_pred CCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccccc
Q 017405 312 DDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILK 362 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 362 (372)
....|++|+..+.++...-..+|+|.||..||+.|-+.-.+||+||.++..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 345799999999999888888899999999999999999999999987653
No 42
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=9e-05 Score=73.27 Aligned_cols=52 Identities=37% Similarity=0.752 Sum_probs=42.9
Q ss_pred cCCCCceeeeecccccCCCceEEeCCCCc-ccHHHHHHHHhcCCCCcccccccccc
Q 017405 309 ISEDDAECCICLSAYDDGTELRELPCLHH-FHCSCLDKWLYINSTCPLCKFNILKM 363 (372)
Q Consensus 309 ~~~ed~eC~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~ 363 (372)
.+++..+|.|||.+-.|- ..|||.|. .|..|-+.---+.+.||+||++|..-
T Consensus 286 ~~~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred cccCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 345568999999987765 89999994 78999988777788899999998653
No 43
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.43 E-value=6.7e-05 Score=72.22 Aligned_cols=46 Identities=26% Similarity=0.546 Sum_probs=42.1
Q ss_pred ceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccccc
Q 017405 314 AECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILK 362 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 362 (372)
..|-||-+-+..+ .+.+|||-||.-||...|..+..||+||.+-.+
T Consensus 26 lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 26 LRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 5799999999988 788999999999999999999999999987654
No 44
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00011 Score=71.22 Aligned_cols=49 Identities=29% Similarity=0.614 Sum_probs=41.4
Q ss_pred CCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhc-CCCCcccccccccc
Q 017405 312 DDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYI-NSTCPLCKFNILKM 363 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~ 363 (372)
.+++|.||+..-.-+ ..|+|+|.|+-.||+.=.+. +.+||+||++|.+.
T Consensus 6 ~~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 357999999987777 78999999999999986654 56799999999764
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0002 Score=71.79 Aligned_cols=46 Identities=37% Similarity=0.880 Sum_probs=36.7
Q ss_pred ceeeeecccccCCC--ceEEeCCCCcccHHHHHHHHhc--CCCCcccccc
Q 017405 314 AECCICLSAYDDGT--ELRELPCLHHFHCSCLDKWLYI--NSTCPLCKFN 359 (372)
Q Consensus 314 ~eC~ICL~~y~~~d--~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~ 359 (372)
..|+|||+.|.-.- .+..|.|+|.|-.+||++||.+ ...||.|+..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 58999999998654 3445669999999999999963 2359999754
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=5.6e-05 Score=74.54 Aligned_cols=54 Identities=31% Similarity=0.567 Sum_probs=44.6
Q ss_pred CCceeeeecccccCCCceEEeC-CCCcccHHHHHHHHhc-CCCCccccccccccCCcCC
Q 017405 312 DDAECCICLSAYDDGTELRELP-CLHHFHCSCLDKWLYI-NSTCPLCKFNILKMSNERG 368 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~~~~ 368 (372)
.+..|+|||+-++.- +..+ |.|.||.+||.+=++. +++||.||+.+..+-+..+
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~ 97 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRI 97 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCC
Confidence 457899999998876 5555 9999999999999874 7789999999887665543
No 47
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00019 Score=71.50 Aligned_cols=52 Identities=29% Similarity=0.793 Sum_probs=39.9
Q ss_pred CCCceeeeecccccCCC----ceEEeC-CCCcccHHHHHHHH--hc-----CCCCccccccccc
Q 017405 311 EDDAECCICLSAYDDGT----ELRELP-CLHHFHCSCLDKWL--YI-----NSTCPLCKFNILK 362 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d----~lr~LP-C~H~FH~~CId~WL--~~-----~~tCPlCR~~I~~ 362 (372)
..+.+|.||++...+.. ....|| |+|.|+..||++|- ++ +..||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 46789999999876653 123456 99999999999998 33 5679999976643
No 48
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00042 Score=64.66 Aligned_cols=55 Identities=29% Similarity=0.637 Sum_probs=45.4
Q ss_pred CCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhc--------CCCCccccccccccCCc
Q 017405 311 EDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYI--------NSTCPLCKFNILKMSNE 366 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--------~~tCPlCR~~I~~~~~~ 366 (372)
..+..|..|-..+..+|.+| |-|-|.||++|++.|--. ...||.|..+|.+.-+.
T Consensus 48 DY~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred CCCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 34568999999999998875 779999999999999742 33599999999876553
No 49
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.98 E-value=0.00029 Score=61.01 Aligned_cols=35 Identities=23% Similarity=0.535 Sum_probs=31.9
Q ss_pred CceeeeecccccCCCceEEeCCC------CcccHHHHHHHH
Q 017405 313 DAECCICLSAYDDGTELRELPCL------HHFHCSCLDKWL 347 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~------H~FH~~CId~WL 347 (372)
..||.||++...+++.++.++|+ |+||.+|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 46999999999997889999998 999999999993
No 50
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.94 E-value=0.00018 Score=54.63 Aligned_cols=47 Identities=26% Similarity=0.576 Sum_probs=23.9
Q ss_pred ceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccccccC
Q 017405 314 AECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILKMS 364 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 364 (372)
-.|++|.+-++++ +..-.|.|.|+..||..-+. ..||+|+.+...++
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 4699999998887 22345999999999988554 45999998775443
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00048 Score=70.02 Aligned_cols=51 Identities=33% Similarity=0.791 Sum_probs=44.9
Q ss_pred CCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccccccC
Q 017405 311 EDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILKMS 364 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 364 (372)
..+.+|+||...+..+ ..+||||.|+..||++-+..+..||+||.++.+-.
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVELP 132 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccccch
Confidence 4568999999999888 77899999999999998888889999999987543
No 52
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.81 E-value=0.00092 Score=75.34 Aligned_cols=58 Identities=28% Similarity=0.552 Sum_probs=46.5
Q ss_pred cccccCCCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcC----------CCCccccccccc
Q 017405 305 MEHVISEDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYIN----------STCPLCKFNILK 362 (372)
Q Consensus 305 ~e~~~~~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~----------~tCPlCR~~I~~ 362 (372)
++..-...|+.|-||..+--.....++|.|+|+||..|...-|... -+||+|+.+|.+
T Consensus 3478 ks~tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3478 KSATKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hhhhhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3444566789999999988777888899999999999998766532 259999998864
No 53
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.74 E-value=0.00044 Score=69.09 Aligned_cols=46 Identities=35% Similarity=0.744 Sum_probs=39.3
Q ss_pred CceeeeecccccCC-CceEEeCCCCcccHHHHHHHHhcCC--CCccccc
Q 017405 313 DAECCICLSAYDDG-TELRELPCLHHFHCSCLDKWLYINS--TCPLCKF 358 (372)
Q Consensus 313 d~eC~ICL~~y~~~-d~lr~LPC~H~FH~~CId~WL~~~~--tCPlCR~ 358 (372)
+.-|..|-+.|... +.+-.|||.|+||..|+...|..+. +||-||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45799999999754 5688899999999999999998765 6999984
No 54
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.00053 Score=50.31 Aligned_cols=46 Identities=26% Similarity=0.533 Sum_probs=33.6
Q ss_pred CceeeeecccccCCCceEEeCCCCc-ccHHHHHH-HHhcCCCCcccccccc
Q 017405 313 DAECCICLSAYDDGTELRELPCLHH-FHCSCLDK-WLYINSTCPLCKFNIL 361 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~H~-FH~~CId~-WL~~~~tCPlCR~~I~ 361 (372)
++||.||.+.-.|. ....|||. .+-+|-.+ |-..+..||+||.+|.
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 48999999876655 34459996 45566544 4447889999999875
No 55
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00084 Score=59.74 Aligned_cols=36 Identities=36% Similarity=0.865 Sum_probs=31.9
Q ss_pred cccccCCCCceeeeecccccCCCceEEeCCCCcccH
Q 017405 305 MEHVISEDDAECCICLSAYDDGTELRELPCLHHFHC 340 (372)
Q Consensus 305 ~e~~~~~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~ 340 (372)
++.+++.+.-||.|||++++.++.+..|||-.+||+
T Consensus 169 NdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 169 NDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 445666777899999999999999999999999997
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.42 E-value=0.0013 Score=67.06 Aligned_cols=51 Identities=27% Similarity=0.656 Sum_probs=44.0
Q ss_pred CCCceeeeecccccCCCceEE-eCCCCcccHHHHHHHHhcCCCCccccccccccC
Q 017405 311 EDDAECCICLSAYDDGTELRE-LPCLHHFHCSCLDKWLYINSTCPLCKFNILKMS 364 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d~lr~-LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 364 (372)
.++..|++|.....++ .. ..|+|.|+..|+.+|+..+..||.|+.++....
T Consensus 19 ~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 4567899999999998 33 579999999999999999999999988776543
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.37 E-value=0.0014 Score=48.76 Aligned_cols=41 Identities=22% Similarity=0.591 Sum_probs=28.7
Q ss_pred CceeeeecccccCCCceEEeCCCCcccHHHHHHHHhc--CCCCcc
Q 017405 313 DAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYI--NSTCPL 355 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--~~tCPl 355 (372)
...|+|.+..|+++ ++...|+|.|-++.|.+|++. +..||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 46899999999977 566689999999999999954 345998
No 58
>PHA02862 5L protein; Provisional
Probab=96.25 E-value=0.0036 Score=54.84 Aligned_cols=45 Identities=27% Similarity=0.629 Sum_probs=34.6
Q ss_pred CceeeeecccccCCCceEEeCCC-----CcccHHHHHHHHhc--CCCCcccccccc
Q 017405 313 DAECCICLSAYDDGTELRELPCL-----HHFHCSCLDKWLYI--NSTCPLCKFNIL 361 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR~~I~ 361 (372)
++.|=||.++-+++ .-||. ..-|.+|+.+|++. +..||+||++..
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 36899999985433 35765 67899999999974 457999998654
No 59
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.08 E-value=0.003 Score=45.12 Aligned_cols=40 Identities=35% Similarity=0.904 Sum_probs=27.9
Q ss_pred eeeecccccCCCceEEeCCC-----CcccHHHHHHHHhc--CCCCccc
Q 017405 316 CCICLSAYDDGTELRELPCL-----HHFHCSCLDKWLYI--NSTCPLC 356 (372)
Q Consensus 316 C~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlC 356 (372)
|-||+++-++++. ...||+ ..-|.+|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~~-li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEP-LISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCc-eecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6799998777663 357865 47899999999974 5679987
No 60
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.73 E-value=0.0038 Score=62.68 Aligned_cols=45 Identities=33% Similarity=0.780 Sum_probs=37.6
Q ss_pred eeeeecccccCCCceEEeCCCCcccHHHHHHHHhc--CCCCccccccccc
Q 017405 315 ECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYI--NSTCPLCKFNILK 362 (372)
Q Consensus 315 eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~ 362 (372)
-|.||-+. +..++.=||||..|..|+..|-.. .++||.||.+|..
T Consensus 371 LCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 59999875 345677899999999999999853 5789999999864
No 61
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.71 E-value=0.011 Score=52.69 Aligned_cols=47 Identities=28% Similarity=0.627 Sum_probs=34.8
Q ss_pred CCCceeeeecccccCCCceEEeCCC--C---cccHHHHHHHHhcC--CCCcccccccc
Q 017405 311 EDDAECCICLSAYDDGTELRELPCL--H---HFHCSCLDKWLYIN--STCPLCKFNIL 361 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d~lr~LPC~--H---~FH~~CId~WL~~~--~tCPlCR~~I~ 361 (372)
..+.+|=||.++.. ++ .-||. . .-|.+|+++|+..+ ..||+|+++..
T Consensus 6 ~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 45679999998854 22 24865 3 66999999999754 46999987654
No 62
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.53 E-value=0.0048 Score=56.72 Aligned_cols=44 Identities=23% Similarity=0.444 Sum_probs=39.4
Q ss_pred ceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 017405 314 AECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNI 360 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I 360 (372)
..|.||-++|+.+ +...|||+||..|.-+=++...+|-+|....
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 3799999999998 7778999999999999999999999997654
No 63
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.49 E-value=0.0051 Score=50.35 Aligned_cols=33 Identities=24% Similarity=0.711 Sum_probs=28.4
Q ss_pred CCCceeeeecccccCCCceEEeCCCCcccHHHHH
Q 017405 311 EDDAECCICLSAYDDGTELRELPCLHHFHCSCLD 344 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId 344 (372)
.++..|++|-..+.+ ..+...||||.||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 455679999999988 577889999999999975
No 64
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.0072 Score=61.01 Aligned_cols=46 Identities=35% Similarity=0.702 Sum_probs=38.5
Q ss_pred CceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcC--------CCCccccc
Q 017405 313 DAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYIN--------STCPLCKF 358 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~--------~tCPlCR~ 358 (372)
...|+||+++....+-+..|||+|+|++.|....+.+. -.||-|+.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 46899999998887899999999999999999998642 24887754
No 65
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.0041 Score=66.96 Aligned_cols=49 Identities=20% Similarity=0.467 Sum_probs=39.1
Q ss_pred CceeeeecccccCCCceEEeCCCCcccHHHHHHHHhc-CCCCccccccccccC
Q 017405 313 DAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYI-NSTCPLCKFNILKMS 364 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~ 364 (372)
--.|+.|-...++- ....|+|.||.+||.+-+.. ...||.|-..+...+
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 35799999877775 44559999999999999975 457999988776543
No 66
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.017 Score=55.66 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=41.6
Q ss_pred ccCCCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhc--CCCCcccccccccc
Q 017405 308 VISEDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYI--NSTCPLCKFNILKM 363 (372)
Q Consensus 308 ~~~~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~~ 363 (372)
.....+.+|++|-+.-..+ ....+|+|+||--||..=+.- .-+||.|-.+..+.
T Consensus 234 s~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred ccccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 3445678999999986555 345679999999999997654 35899999887743
No 67
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.03 E-value=0.0093 Score=61.90 Aligned_cols=52 Identities=29% Similarity=0.652 Sum_probs=41.0
Q ss_pred CCceeeeecccccCCCceEEeCCCCcccHHHHHHHHh-----cCCCCccccccccccCCc
Q 017405 312 DDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLY-----INSTCPLCKFNILKMSNE 366 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-----~~~tCPlCR~~I~~~~~~ 366 (372)
+..+|.+|-+.-++. .+..|.|.||.-||.+... .+-+||.|...+.-..++
T Consensus 535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse 591 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSE 591 (791)
T ss_pred CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccc
Confidence 456899999987776 6778999999999998874 356899998776554443
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.72 E-value=0.016 Score=41.65 Aligned_cols=44 Identities=23% Similarity=0.495 Sum_probs=20.4
Q ss_pred eeeecccccCCCceEEeC--CCCcccHHHHHHHHh-cCCCCccccccc
Q 017405 316 CCICLSAYDDGTELRELP--CLHHFHCSCLDKWLY-INSTCPLCKFNI 360 (372)
Q Consensus 316 C~ICL~~y~~~d~lr~LP--C~H~FH~~CId~WL~-~~~tCPlCR~~I 360 (372)
|++|.++++.. ..-.+| |++..+..|...-++ .+..||-||.+.
T Consensus 1 cp~C~e~~d~~-d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDET-DKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CC-CTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccC-CCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78899998332 333456 788888888666665 467899999763
No 69
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.011 Score=57.33 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=41.3
Q ss_pred ceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccccc
Q 017405 314 AECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILK 362 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 362 (372)
..|-||-..|.++ +...|+|.|+..|--+=++....|++|.+++-.
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccccc
Confidence 4599999999999 778899999999999999999999999887654
No 70
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.59 E-value=0.0096 Score=58.59 Aligned_cols=49 Identities=35% Similarity=0.664 Sum_probs=40.7
Q ss_pred CCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccccc
Q 017405 312 DDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILK 362 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 362 (372)
...+|.+|-.-+-|...+ .-|-|-||+.||-+.|..+.+||.|.-.|-.
T Consensus 14 ~~itC~LC~GYliDATTI--~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTI--TECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred cceehhhccceeecchhH--HHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 457899999988887432 2399999999999999999999999876654
No 71
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.46 E-value=0.024 Score=61.83 Aligned_cols=51 Identities=29% Similarity=0.724 Sum_probs=38.0
Q ss_pred cCCCCceeeeecccccCCCceEEeC-CCCcccHHHHHHHHhcCC-------CCcccccc
Q 017405 309 ISEDDAECCICLSAYDDGTELRELP-CLHHFHCSCLDKWLYINS-------TCPLCKFN 359 (372)
Q Consensus 309 ~~~ed~eC~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~-------tCPlCR~~ 359 (372)
++....+|.||.+.+..-+.+---. |-|+||..||.+|-+... .||-|+..
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 3445679999999988766554322 779999999999986421 39999843
No 72
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.0028 Score=63.39 Aligned_cols=52 Identities=23% Similarity=0.524 Sum_probs=46.8
Q ss_pred CceeeeecccccCC-CceEEeCCCCcccHHHHHHHHhcCCCCccccccccccC
Q 017405 313 DAECCICLSAYDDG-TELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILKMS 364 (372)
Q Consensus 313 d~eC~ICL~~y~~~-d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 364 (372)
...|+||..+|+.. +++-.+-|+|.+|.+|+.+||.....||.|+.++....
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 35799999999988 88889999999999999999999888999999887654
No 73
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.057 Score=53.25 Aligned_cols=49 Identities=18% Similarity=0.432 Sum_probs=39.0
Q ss_pred cCCCCceeeeecccccCCCceEEeC-CCCcccHHHHHHHHhcCCCCccccccc
Q 017405 309 ISEDDAECCICLSAYDDGTELRELP-CLHHFHCSCLDKWLYINSTCPLCKFNI 360 (372)
Q Consensus 309 ~~~ed~eC~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I 360 (372)
...+...|++|+..-.++ ..|. -|.+||..||-+.+..++.||+=-.+.
T Consensus 296 l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345667899999998877 3333 589999999999999999999854443
No 74
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.047 Score=54.31 Aligned_cols=48 Identities=25% Similarity=0.562 Sum_probs=41.6
Q ss_pred CCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccc
Q 017405 311 EDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNIL 361 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 361 (372)
.||+.|+||...--.. ...||+|.=|..||.+-|-.++.|=.||..+.
T Consensus 420 sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 5789999998764433 67899999999999999999999999998776
No 75
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.041 Score=54.83 Aligned_cols=45 Identities=24% Similarity=0.489 Sum_probs=33.3
Q ss_pred CCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccc
Q 017405 311 EDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNIL 361 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 361 (372)
...+.|.||+++.++- ..+||||.-+ |..-- +...+||+||+.|.
T Consensus 303 ~~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSA---VFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccce---eeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 3457899999987774 7899999855 55443 33455999998775
No 76
>PHA03096 p28-like protein; Provisional
Probab=93.62 E-value=0.033 Score=54.43 Aligned_cols=36 Identities=25% Similarity=0.509 Sum_probs=28.6
Q ss_pred ceeeeecccccCC----CceEEeC-CCCcccHHHHHHHHhc
Q 017405 314 AECCICLSAYDDG----TELRELP-CLHHFHCSCLDKWLYI 349 (372)
Q Consensus 314 ~eC~ICL~~y~~~----d~lr~LP-C~H~FH~~CId~WL~~ 349 (372)
.+|.||++.-... ...-.|+ |.|.|+..||..|-..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 6899999887643 2334677 9999999999999864
No 77
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=0.1 Score=49.69 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=46.3
Q ss_pred CCceeeeecccccCCCceEEe-CCCCcccHHHHHHHHhcCCCCccccccccccC
Q 017405 312 DDAECCICLSAYDDGTELREL-PCLHHFHCSCLDKWLYINSTCPLCKFNILKMS 364 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 364 (372)
....|++|.+.+.+-.....| ||||+|..+|+.+..+....||+|-.++.+.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 457899999999998877777 49999999999999999999999988776544
No 78
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.70 E-value=0.1 Score=46.55 Aligned_cols=34 Identities=29% Similarity=0.593 Sum_probs=23.7
Q ss_pred CCceeeeecccccCCCceEEeC------------CC-CcccHHHHHHHHh
Q 017405 312 DDAECCICLSAYDDGTELRELP------------CL-HHFHCSCLDKWLY 348 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LP------------C~-H~FH~~CId~WL~ 348 (372)
||..|+|||+--.+. +.|- |+ -.=|..|+|+.-+
T Consensus 1 ed~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 468999999875554 3333 44 3458999999864
No 79
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.36 E-value=0.12 Score=50.25 Aligned_cols=50 Identities=34% Similarity=0.690 Sum_probs=38.4
Q ss_pred CceeeeecccccCCCc-eEEeCCC-----CcccHHHHHHHHh--cCCCCccccccccc
Q 017405 313 DAECCICLSAYDDGTE-LRELPCL-----HHFHCSCLDKWLY--INSTCPLCKFNILK 362 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~-lr~LPC~-----H~FH~~CId~WL~--~~~tCPlCR~~I~~ 362 (372)
+..|=||..+....+. ....||. +..|..|+++|+. .+..|.+|++....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 5789999998765432 4577876 7789999999998 45679999875543
No 80
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.09 E-value=0.095 Score=38.70 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=33.3
Q ss_pred ceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 017405 314 AECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILKM 363 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 363 (372)
..|-.|...=..+ ..+||+|.-+..|-+-+ +-+-||.|..++...
T Consensus 8 ~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGTKG---TVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccccccc---ccccccceeeccccChh--hccCCCCCCCcccCC
Confidence 4566666654444 78999999999996654 456699999888654
No 81
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.72 E-value=0.26 Score=49.07 Aligned_cols=48 Identities=29% Similarity=0.762 Sum_probs=37.2
Q ss_pred CCCCceeeeecccccCCCceEEeCCCCcccHHHHHHH--HhcCCCCccccccc
Q 017405 310 SEDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKW--LYINSTCPLCKFNI 360 (372)
Q Consensus 310 ~~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~W--L~~~~tCPlCR~~I 360 (372)
.++...|-||-....-. -.+||+|..|-.|--.- |.....||+||.+-
T Consensus 58 DEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 34556799998876543 78999999999996553 56788999999753
No 82
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.23 E-value=0.22 Score=47.98 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=40.6
Q ss_pred CCCceeeeecccccCCCceEEe-CCCCcccHHHHHHHHhcCCCCcccccccccc
Q 017405 311 EDDAECCICLSAYDDGTELREL-PCLHHFHCSCLDKWLYINSTCPLCKFNILKM 363 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 363 (372)
.....|+|...+|........| ||||+|-..+|++- +....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 3456899999999666555555 79999999999997 3356799998876644
No 83
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.09 E-value=0.082 Score=51.39 Aligned_cols=45 Identities=27% Similarity=0.561 Sum_probs=38.6
Q ss_pred ceeeeecccccCCC-ceEEeCCCCcccHHHHHHHHhcCCCCccccc
Q 017405 314 AECCICLSAYDDGT-ELRELPCLHHFHCSCLDKWLYINSTCPLCKF 358 (372)
Q Consensus 314 ~eC~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 358 (372)
..|+||.+.+-+.. .+..++|+|.-|..|...-...+-+||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999999887664 4567899999999999999888899999987
No 84
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=0.16 Score=49.31 Aligned_cols=47 Identities=32% Similarity=0.602 Sum_probs=38.2
Q ss_pred ceeeeecccccCCCce---EEeCCCCcccHHHHHHHHhcC-CCCccccccc
Q 017405 314 AECCICLSAYDDGTEL---RELPCLHHFHCSCLDKWLYIN-STCPLCKFNI 360 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~l---r~LPC~H~FH~~CId~WL~~~-~tCPlCR~~I 360 (372)
.+|-||-++|..++.. +.|.|||.|+..|+.+-+... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 5799999999977433 456699999999999887654 4599999874
No 85
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.27 E-value=0.14 Score=49.99 Aligned_cols=45 Identities=27% Similarity=0.649 Sum_probs=34.9
Q ss_pred ceeeeecccccCCCceEEeC-CCCcccHHHHHHHHh-cCCCCcccc-cccc
Q 017405 314 AECCICLSAYDDGTELRELP-CLHHFHCSCLDKWLY-INSTCPLCK-FNIL 361 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~-~~~tCPlCR-~~I~ 361 (372)
..|+.|-.-..+. ...| |+|.|+.+||..-|. ....||.|. ++|.
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 5799988887777 4556 899999999998765 566899994 4544
No 86
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.55 E-value=0.61 Score=47.08 Aligned_cols=29 Identities=24% Similarity=0.734 Sum_probs=22.6
Q ss_pred CCCcccHHHHHHHHh-------------cCCCCccccccccc
Q 017405 334 CLHHFHCSCLDKWLY-------------INSTCPLCKFNILK 362 (372)
Q Consensus 334 C~H~FH~~CId~WL~-------------~~~tCPlCR~~I~~ 362 (372)
|.-+.|.+|+-+|+- .+..||.||+...-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 557789999999983 34579999987654
No 87
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.99 E-value=0.18 Score=55.50 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=30.3
Q ss_pred CCCCceeeeecccccCCCceEEeCCCCcccHHHHHHHH
Q 017405 310 SEDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWL 347 (372)
Q Consensus 310 ~~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL 347 (372)
-+.++.|.+|...+-.. ....-||+|.||++||.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 34567899999988765 66788999999999998764
No 88
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.73 E-value=0.26 Score=44.84 Aligned_cols=35 Identities=31% Similarity=0.652 Sum_probs=27.2
Q ss_pred EeCCCCcccHHHHHHHHhcC-----------CCCccccccccccCC
Q 017405 331 ELPCLHHFHCSCLDKWLYIN-----------STCPLCKFNILKMSN 365 (372)
Q Consensus 331 ~LPC~H~FH~~CId~WL~~~-----------~tCPlCR~~I~~~~~ 365 (372)
...||.-||.-|+..||+.- ..||-|..+|.-+-+
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmS 232 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMS 232 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeecc
Confidence 34599999999999999631 259999998865543
No 89
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.23 E-value=0.4 Score=52.42 Aligned_cols=55 Identities=25% Similarity=0.612 Sum_probs=41.6
Q ss_pred cCCCCceeeeecccccCCCceEEeCCC-----CcccHHHHHHHHhcCC--CCccccccccccC
Q 017405 309 ISEDDAECCICLSAYDDGTELRELPCL-----HHFHCSCLDKWLYINS--TCPLCKFNILKMS 364 (372)
Q Consensus 309 ~~~ed~eC~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~~~~--tCPlCR~~I~~~~ 364 (372)
..+++..|-||..+=..++++- =||. ...|.+|+-+|+.-++ .|-+|++++.-+.
T Consensus 8 mN~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 8 MNEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CCccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 3456688999998877776664 3765 5789999999998544 4999999876443
No 90
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.23 E-value=0.095 Score=51.02 Aligned_cols=43 Identities=30% Similarity=0.612 Sum_probs=31.4
Q ss_pred CceeeeecccccCCCceEEeCCCCcc-cHHHHHHHHhcCCCCccccccccc
Q 017405 313 DAECCICLSAYDDGTELRELPCLHHF-HCSCLDKWLYINSTCPLCKFNILK 362 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~H~F-H~~CId~WL~~~~tCPlCR~~I~~ 362 (372)
+.-|.||++.-.| ...|+|||.- +.+|= ++-+.||+||+-|..
T Consensus 300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CG----krm~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLECGHMVTCTKCG----KRMNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEeecCcEEeehhhc----cccccCchHHHHHHH
Confidence 6789999987554 4889999964 44452 234589999987754
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.05 E-value=0.17 Score=35.40 Aligned_cols=41 Identities=27% Similarity=0.663 Sum_probs=21.0
Q ss_pred eeeecccccCCCceEEeCCCCcccHHHHHHHHhcCC--CCccc
Q 017405 316 CCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINS--TCPLC 356 (372)
Q Consensus 316 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~--tCPlC 356 (372)
|.+|-+-.-.|..--.-.|+=.+|..|++++++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 445555555552111123888899999999998655 79988
No 92
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=0.19 Score=49.42 Aligned_cols=44 Identities=27% Similarity=0.518 Sum_probs=30.9
Q ss_pred eeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccccc
Q 017405 315 ECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILK 362 (372)
Q Consensus 315 eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 362 (372)
.|--|-..+.. .-|.+||+|+||.+|-.. ...+.||+|-..|..
T Consensus 92 fCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 92 FCDRCDFPIAI--YGRMIPCKHVFCLECARS--DSDKICPLCDDRVQR 135 (389)
T ss_pred eecccCCccee--eecccccchhhhhhhhhc--CccccCcCcccHHHH
Confidence 45566555432 237899999999999654 345689999776654
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.84 E-value=0.29 Score=53.77 Aligned_cols=42 Identities=26% Similarity=0.671 Sum_probs=33.3
Q ss_pred ceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 017405 314 AECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNI 360 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I 360 (372)
..|..|--..+-+ ....-|+|.||..|+. .....||-|+-+.
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 5899999887776 3445599999999998 5556799998743
No 94
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=87.63 E-value=5.1 Score=33.89 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=16.8
Q ss_pred HHHhcCCCCccccccccccCCcCC
Q 017405 345 KWLYINSTCPLCKFNILKMSNERG 368 (372)
Q Consensus 345 ~WL~~~~tCPlCR~~I~~~~~~~~ 368 (372)
+-+.+...|+-|++++.-..+.++
T Consensus 80 KmLGr~D~CM~C~~pLTLd~~leg 103 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLDPSLEG 103 (114)
T ss_pred hhhchhhccCcCCCcCccCchhhc
Confidence 345555679999998877666554
No 95
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=86.60 E-value=0.24 Score=53.94 Aligned_cols=47 Identities=30% Similarity=0.578 Sum_probs=37.2
Q ss_pred ceeeeecccccCCCceEEeCCCCcccHHHHHHHHhc--CCCCccccccccccC
Q 017405 314 AECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYI--NSTCPLCKFNILKMS 364 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~~~ 364 (372)
..|.||++ .+.....+|+|.|+.+|+.+-+.. +..||+||..+.+..
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 68999999 344577889999999999887754 335999998876544
No 96
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=85.08 E-value=0.23 Score=53.63 Aligned_cols=50 Identities=38% Similarity=0.587 Sum_probs=40.8
Q ss_pred CceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcC---CCCccccccccccCC
Q 017405 313 DAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYIN---STCPLCKFNILKMSN 365 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~I~~~~~ 365 (372)
..+|+||+..|.++ ..+.|.|.|...|+..-+... ..||+|+.++.+.+.
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~ 73 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL 73 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc
Confidence 46899999999998 677899999999988866543 359999988776543
No 97
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=84.74 E-value=0.4 Score=34.39 Aligned_cols=32 Identities=25% Similarity=0.585 Sum_probs=23.0
Q ss_pred eCCC-CcccHHHHHHHHhcCCCCcccccccccc
Q 017405 332 LPCL-HHFHCSCLDKWLYINSTCPLCKFNILKM 363 (372)
Q Consensus 332 LPC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~ 363 (372)
..|+ |..+..|+..-|.++..||+|+.+++.+
T Consensus 16 i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 4586 9999999999999999999999998764
No 98
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=84.47 E-value=1.2 Score=32.93 Aligned_cols=38 Identities=26% Similarity=0.709 Sum_probs=31.2
Q ss_pred ceeeeecccccCCCceEEeC-CCCcccHHHHHHHHhcCCCCcc
Q 017405 314 AECCICLSAYDDGTELRELP-CLHHFHCSCLDKWLYINSTCPL 355 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPl 355 (372)
..|.+|-+.|++++.+.+-| |+-.+|.+|-++ ...|-.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 57999999999998898888 999999999433 445644
No 99
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.70 E-value=1 Score=39.19 Aligned_cols=48 Identities=29% Similarity=0.594 Sum_probs=36.6
Q ss_pred ceeeeecccccCCCceEEe-C---CCCcccHHHHHHHHh---cCCCCccccccccccC
Q 017405 314 AECCICLSAYDDGTELREL-P---CLHHFHCSCLDKWLY---INSTCPLCKFNILKMS 364 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~L-P---C~H~FH~~CId~WL~---~~~tCPlCR~~I~~~~ 364 (372)
.+|.||-+.-.+. +-| | ||...+..|--.-++ .++.||+||.......
T Consensus 81 YeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 6899999987666 444 3 898888888777544 4678999999886544
No 100
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.55 E-value=0.38 Score=51.43 Aligned_cols=44 Identities=30% Similarity=0.539 Sum_probs=33.5
Q ss_pred ceeeeecccccCCC-ceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 017405 314 AECCICLSAYDDGT-ELRELPCLHHFHCSCLDKWLYINSTCPLCKFNI 360 (372)
Q Consensus 314 ~eC~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I 360 (372)
..|.||+..|-... +-+-|-|||..|..|+.+-. +.+|| |+++=
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~De 56 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKRDE 56 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCccc
Confidence 56999998887663 22345599999999998854 77899 87653
No 101
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.20 E-value=1.2 Score=47.29 Aligned_cols=51 Identities=35% Similarity=0.840 Sum_probs=41.6
Q ss_pred ccCCCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccccccCC
Q 017405 308 VISEDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILKMSN 365 (372)
Q Consensus 308 ~~~~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 365 (372)
.+.+....|.||+.+. ..+..+|. |..|..+|+..+.+||+|...+...+.
T Consensus 474 ~l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hhhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 3455678899999998 44777898 999999999999999999877665443
No 102
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=80.82 E-value=0.46 Score=54.39 Aligned_cols=45 Identities=36% Similarity=0.771 Sum_probs=37.9
Q ss_pred CceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCcccccc
Q 017405 313 DAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFN 359 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~ 359 (372)
...|.||++...... ...-|+|.+++.|...|+..+..||.|+..
T Consensus 1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 348999999988432 345699999999999999999999999853
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=80.48 E-value=1.1 Score=44.59 Aligned_cols=51 Identities=20% Similarity=0.495 Sum_probs=34.4
Q ss_pred CCceeeeecccccCCCc-eEEeCCCCcccHHHHHHHH-hcCCCCccccccccc
Q 017405 312 DDAECCICLSAYDDGTE-LRELPCLHHFHCSCLDKWL-YINSTCPLCKFNILK 362 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~-lr~LPC~H~FH~~CId~WL-~~~~tCPlCR~~I~~ 362 (372)
+++-|+.|+++++..|+ ..--|||...|.-|-..-- .-+..||-||....+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 45569999999987653 4556788776666632221 136679999976543
No 104
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=79.33 E-value=1.1 Score=44.33 Aligned_cols=45 Identities=24% Similarity=0.585 Sum_probs=35.4
Q ss_pred CCCceeeeecccccCCCceEEeCCC--CcccHHHHHHHHhcCCCCccccccccc
Q 017405 311 EDDAECCICLSAYDDGTELRELPCL--HHFHCSCLDKWLYINSTCPLCKFNILK 362 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d~lr~LPC~--H~FH~~CId~WL~~~~tCPlCR~~I~~ 362 (372)
.+-.+|+||.+.+..+ ...|. |.-+..|=. +..+.||.||.++.+
T Consensus 46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 3457899999999987 56674 888877754 567889999998873
No 105
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.72 E-value=1.7 Score=47.68 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=36.9
Q ss_pred CCceeeeecccccCC-CceEEeC---CCCcccHHHHHHHHh------cCCCCcccccccc
Q 017405 312 DDAECCICLSAYDDG-TELRELP---CLHHFHCSCLDKWLY------INSTCPLCKFNIL 361 (372)
Q Consensus 312 ed~eC~ICL~~y~~~-d~lr~LP---C~H~FH~~CId~WL~------~~~tCPlCR~~I~ 361 (372)
+...|.+|..++.++ |..-.+| |.|.||..||.+|.. ++..|++|+..|.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 445677777776663 3445567 999999999999985 3456999988764
No 106
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=78.65 E-value=0.79 Score=48.94 Aligned_cols=40 Identities=28% Similarity=0.649 Sum_probs=27.0
Q ss_pred ceeeeecc-----cccCCCceEEeCCCCcccHHHHHHHHhcCCCCccc
Q 017405 314 AECCICLS-----AYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLC 356 (372)
Q Consensus 314 ~eC~ICL~-----~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlC 356 (372)
..|.+|-. .|+..+..+-.-|+++||++| |=..+..||.|
T Consensus 512 fiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C---~~r~s~~CPrC 556 (580)
T KOG1829|consen 512 FICELCQHNDIIYPFETRNTRRCSTCLAVFHKKC---LRRKSPCCPRC 556 (580)
T ss_pred eeeeeccCCCcccccccccceeHHHHHHHHHHHH---HhccCCCCCch
Confidence 46788832 333334455566999999999 44455559999
No 107
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=76.75 E-value=1.2 Score=45.64 Aligned_cols=35 Identities=29% Similarity=0.619 Sum_probs=31.5
Q ss_pred CCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhc
Q 017405 312 DDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYI 349 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~ 349 (372)
|+..|+||..-|+++ +.|||+|..|..|-..-+..
T Consensus 3 eelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 456899999999999 89999999999999988854
No 108
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=75.76 E-value=1.9 Score=47.05 Aligned_cols=40 Identities=30% Similarity=0.603 Sum_probs=28.5
Q ss_pred eeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCcc
Q 017405 315 ECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPL 355 (372)
Q Consensus 315 eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPl 355 (372)
.|.||--.... --.....|+|+-|..|...|+.....||.
T Consensus 1030 ~C~~C~l~V~g-ss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRG-SSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeEeeEeec-cchhhccccccccHHHHHHHHhcCCcCCC
Confidence 35555443222 22334569999999999999999999985
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.46 E-value=1.5 Score=42.85 Aligned_cols=30 Identities=27% Similarity=0.549 Sum_probs=23.8
Q ss_pred CCCcccHHHHHHHH-------------hcCCCCcccccccccc
Q 017405 334 CLHHFHCSCLDKWL-------------YINSTCPLCKFNILKM 363 (372)
Q Consensus 334 C~H~FH~~CId~WL-------------~~~~tCPlCR~~I~~~ 363 (372)
|....|.+|+.+|+ +.+.+||.||++..-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 55778899999987 3567899999987644
No 110
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.05 E-value=2.4 Score=40.83 Aligned_cols=49 Identities=29% Similarity=0.754 Sum_probs=34.1
Q ss_pred CceeeeecccccCCCce-EEeCCC-----CcccHHHHHHHHhcCC--------CCcccccccc
Q 017405 313 DAECCICLSAYDDGTEL-RELPCL-----HHFHCSCLDKWLYINS--------TCPLCKFNIL 361 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~l-r~LPC~-----H~FH~~CId~WL~~~~--------tCPlCR~~I~ 361 (372)
+..|-||+..=+|+..- -.=||. |=-|..|+..|...+. +||-|+.+..
T Consensus 20 eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 20 ERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 45677999986665211 123653 8899999999996432 4999987653
No 111
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=69.16 E-value=2.3 Score=41.17 Aligned_cols=47 Identities=28% Similarity=0.559 Sum_probs=35.9
Q ss_pred CceeeeecccccCCCceEEe-C---CCCcccHHHHHHHHh---------cCCCCcccccc
Q 017405 313 DAECCICLSAYDDGTELREL-P---CLHHFHCSCLDKWLY---------INSTCPLCKFN 359 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~L-P---C~H~FH~~CId~WL~---------~~~tCPlCR~~ 359 (372)
..+|-+|.+++.+.++.+.. | |+-++|..|+..-+. ....||.|++-
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 36899999999766666544 2 888999999999443 24569999873
No 112
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=67.33 E-value=27 Score=34.23 Aligned_cols=100 Identities=13% Similarity=0.183 Sum_probs=60.1
Q ss_pred hhcccccccccchhhHHHH-------HHHHHHHHhhhhhcc----cCCCCCCCceeehhhhchhhHHHHhhhhhhheeec
Q 017405 73 ERQSYWAYSRPIIVLDVLW-------NLVFVIVAFAVLGVS----INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRR 141 (372)
Q Consensus 73 ~r~~~~~~s~~~i~lel~~-------~l~qiv~~i~vL~ls----~~E~p~~PL~~WiigY~~~cv~~l~~~~~~~r~r~ 141 (372)
-|-.||--+-|++.+.+-| +++.++++..+..++ --++- ..-|. =|++++++++..++.-+....
T Consensus 104 aRYIdWllttPllll~l~lla~~~~~ti~~~v~ad~~~iv~~laaa~~~~---tykW~-~y~ig~~a~lvvl~~l~~~~~ 179 (285)
T COG5524 104 ARYIDWLLTTPLLLLYLGLLAGTSLWTIAGVVAADIIMIVTGLAAALTHS---TYKWA-YYAIGAAAFLVVLAVLVTGFF 179 (285)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhhch---hhhHH-HHHHHHHHHHHHHHHHHhhhh
Confidence 4566788999999988754 344444433322221 11111 12343 489999998887776654322
Q ss_pred cCCCcccCCCCCCCCCCCCCCccccccCCCCchhHHHHHHHHHHHHHHHHhhheeEEEeC
Q 017405 142 RGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (372)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~le~~ltlf~~iWfIvG~~Wv~~ 201 (372)
...+. ..+.+.+-+.+..+++.+.|+++-.+|...
T Consensus 180 ~~a~~-------------------------~~~~v~~~F~~l~~~~vvLWl~YPivW~ig 214 (285)
T COG5524 180 AKAKT-------------------------RGTEVRSLFLTLRNYTVVLWLGYPIVWLIG 214 (285)
T ss_pred hhhcc-------------------------cchHHHHHHHHHHHHHHHHHHhccceeEEc
Confidence 21110 113445556677788999999999999985
No 113
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.96 E-value=3.2 Score=43.03 Aligned_cols=37 Identities=35% Similarity=0.741 Sum_probs=31.7
Q ss_pred CCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhc
Q 017405 311 EDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYI 349 (372)
Q Consensus 311 ~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~ 349 (372)
..+.+|-||.+.+.. .+..++|+|.|+..|...-+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 355799999999988 6677889999999999998864
No 114
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.43 E-value=4.1 Score=38.15 Aligned_cols=39 Identities=26% Similarity=0.580 Sum_probs=27.1
Q ss_pred eeeecccccCCCceEEeCCCCc-ccHHHHHHHHhcCCCCcccccccc
Q 017405 316 CCICLSAYDDGTELRELPCLHH-FHCSCLDKWLYINSTCPLCKFNIL 361 (372)
Q Consensus 316 C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~ 361 (372)
|-.|-+. +..+..|||.|+ +|..|=.. -.+||+|+....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 7777664 556889999975 56667443 345999987543
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=61.88 E-value=6.7 Score=43.03 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=32.5
Q ss_pred CCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCcc--cc
Q 017405 312 DDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPL--CK 357 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPl--CR 357 (372)
..+.|++|-.....- .+..=-|+|.-|.+|+.+|+..+.-||. |-
T Consensus 778 a~~~CtVC~~vi~G~-~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~ 824 (839)
T KOG0269|consen 778 ASAKCTVCDLVIRGV-DVWCQVCGHGGHDSHLKSWFFKASPCAKSICP 824 (839)
T ss_pred hhcCceeecceeeee-EeecccccccccHHHHHHHHhcCCCCccccCC
Confidence 345788887664432 1111229999999999999999988887 64
No 116
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.78 E-value=2.9 Score=42.74 Aligned_cols=37 Identities=24% Similarity=0.594 Sum_probs=28.2
Q ss_pred CceeeeecccccCC-CceEEeCCCCcccHHHHHHHHhc
Q 017405 313 DAECCICLSAYDDG-TELRELPCLHHFHCSCLDKWLYI 349 (372)
Q Consensus 313 d~eC~ICL~~y~~~-d~lr~LPC~H~FH~~CId~WL~~ 349 (372)
..+|.||..++..+ +....+-|+|.|+.+|+.+-+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 46899999555444 44455669999999999988864
No 117
>PRK02935 hypothetical protein; Provisional
Probab=61.78 E-value=31 Score=28.93 Aligned_cols=54 Identities=15% Similarity=0.299 Sum_probs=31.6
Q ss_pred hhHHHHHHH-HHHHHHHHHhhh--eeEEEeCccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017405 174 SSVAKNLES-ANTFLSFLWWIV--GFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIG 239 (372)
Q Consensus 174 s~~~~~le~-~ltlf~~iWfIv--G~~Wv~~~~~~~~~~ap~Ly~L~ivfLaf~v~fvv~~val~~li~ 239 (372)
++.+|++++ +|.+.+....+. |.+| ...++++.+|+++++++++...++.+-++
T Consensus 6 ssKINkiRt~aL~lvfiG~~vMy~Giff------------~~~~~~m~ifm~~G~l~~l~S~vvYFwiG 62 (110)
T PRK02935 6 SNKINKIRTFALSLVFIGFIVMYLGIFF------------RESIIIMTIFMLLGFLAVIASTVVYFWIG 62 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh------------cccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566665 666655554443 5444 13367888888888766665545544444
No 118
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.82 E-value=7.5 Score=39.63 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=39.5
Q ss_pred CceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCC---CCccccccc
Q 017405 313 DAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINS---TCPLCKFNI 360 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~---tCPlCR~~I 360 (372)
-..|+|=-+.-.+++.-..|.|||+..++-+++--+... -||-|=.+.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 368999888888888889999999999999999876544 499994433
No 119
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=59.08 E-value=7.5 Score=27.97 Aligned_cols=42 Identities=24% Similarity=0.455 Sum_probs=19.9
Q ss_pred eeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCC-----CCcccccc
Q 017405 315 ECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINS-----TCPLCKFN 359 (372)
Q Consensus 315 eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~-----tCPlCR~~ 359 (372)
.|+|....++.+ +|--.|.|.-+ -=++.||+.+. .||+|.++
T Consensus 4 ~CPls~~~i~~P--~Rg~~C~H~~C-FDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIP--VRGKNCKHLQC-FDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSE--EEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeC--ccCCcCcccce-ECHHHHHHHhhccCCeECcCCcCc
Confidence 588877776664 56667988721 12345665322 49999864
No 120
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=58.52 E-value=5.1 Score=38.30 Aligned_cols=47 Identities=30% Similarity=0.678 Sum_probs=35.5
Q ss_pred CCceeeeeccc-ccCCC-ceEEeC-CCCcccHHHHHHHHhcC-CCCc--cccc
Q 017405 312 DDAECCICLSA-YDDGT-ELRELP-CLHHFHCSCLDKWLYIN-STCP--LCKF 358 (372)
Q Consensus 312 ed~eC~ICL~~-y~~~d-~lr~LP-C~H~FH~~CId~WL~~~-~tCP--lCR~ 358 (372)
+|..|+||-.+ |-++| ++..-| |-|..|..|+|.-+... +.|| -|-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 45689999876 44554 444456 99999999999999865 5699 7854
No 121
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=57.70 E-value=6.2 Score=36.60 Aligned_cols=40 Identities=35% Similarity=0.670 Sum_probs=26.5
Q ss_pred ceeeeeccc-----ccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccc
Q 017405 314 AECCICLSA-----YDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKF 358 (372)
Q Consensus 314 ~eC~ICL~~-----y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 358 (372)
..|-+|-++ |+.+...+--.|+-+||..|.. + ..||-|..
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~---~--~~CpkC~R 197 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR---K--KSCPKCAR 197 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC---C--CCCCCcHh
Confidence 468888653 3343333333499999999965 2 66999953
No 122
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.45 E-value=4.2 Score=44.74 Aligned_cols=44 Identities=20% Similarity=0.419 Sum_probs=33.5
Q ss_pred CCceeeeecccccCC----CceEEeCCCCcccHHHHHHHHhcCCCCccc
Q 017405 312 DDAECCICLSAYDDG----TELRELPCLHHFHCSCLDKWLYINSTCPLC 356 (372)
Q Consensus 312 ed~eC~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~~~tCPlC 356 (372)
.+..|+-|.+..... +.+..+.|+|.||+.|+..-..+++ |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 345799998876522 5677889999999999988776665 6555
No 123
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.25 E-value=7 Score=37.23 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=25.9
Q ss_pred eeeeecccccCCCceEEeCCCCcccHHHHHHHHh
Q 017405 315 ECCICLSAYDDGTELRELPCLHHFHCSCLDKWLY 348 (372)
Q Consensus 315 eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~ 348 (372)
.|.-|..--. +++...+.|.|+||..|...=..
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~~ 37 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASSP 37 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCCc
Confidence 5776665544 88999999999999999876544
No 124
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG3671 Predicted membrane protein [Function unknown]
Probab=50.24 E-value=33 Score=29.42 Aligned_cols=48 Identities=19% Similarity=0.528 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhcc
Q 017405 212 QLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTER 259 (372)
Q Consensus 212 ~Ly~L~ivfLaf~v~fvv~~val~~li~ialCCcLP~Ii~~l~~~~~~ 259 (372)
+.||+++.+-..++++..+++++++++.+.+...+.+++.+.|..+++
T Consensus 68 RTFw~~vl~~iIg~Llt~lgiGv~i~~AlgvW~i~Riv~G~~yl~~g~ 115 (125)
T COG3671 68 RTFWLAVLWWIIGLLLTFLGIGVVILVALGVWYIYRIVIGFKYLNEGK 115 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 467888887777777777777777777777777778888888877763
No 126
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=47.51 E-value=16 Score=23.36 Aligned_cols=36 Identities=19% Similarity=0.463 Sum_probs=23.5
Q ss_pred eeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccc
Q 017405 316 CCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNI 360 (372)
Q Consensus 316 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I 360 (372)
|..|-+.+.+++.... .=+..||.+|. .|..|+..+
T Consensus 2 C~~C~~~i~~~~~~~~-~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLR-ALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEE-eCCccccccCC--------CCcccCCcC
Confidence 7778887777633322 23788998873 477776655
No 127
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.82 E-value=11 Score=38.54 Aligned_cols=44 Identities=23% Similarity=0.432 Sum_probs=32.9
Q ss_pred ceeeeecccccCCCc--eEEeCCCCcccHHHHHHHHhcCCCCcccc
Q 017405 314 AECCICLSAYDDGTE--LRELPCLHHFHCSCLDKWLYINSTCPLCK 357 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~--lr~LPC~H~FH~~CId~WL~~~~tCPlCR 357 (372)
..|++|.-.++-.+. ..+-.|+|.|+..|-..|...+..|..|-
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~ 352 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECC 352 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCcc
Confidence 578888877765443 22334899999999999999888886663
No 128
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=42.10 E-value=16 Score=35.87 Aligned_cols=42 Identities=26% Similarity=0.515 Sum_probs=29.9
Q ss_pred ccCCC-ceEEeCCCCcccHHHHHHHHhcC-CCCccccccccccC
Q 017405 323 YDDGT-ELRELPCLHHFHCSCLDKWLYIN-STCPLCKFNILKMS 364 (372)
Q Consensus 323 y~~~d-~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~~ 364 (372)
|-+++ .+..=||+|-.|..|+|.-+..+ ..||.|-..+.+.+
T Consensus 11 Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 11 YLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred ecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 44444 23333899999999999988765 57999976655443
No 129
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.25 E-value=22 Score=34.34 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=29.6
Q ss_pred CCceeeeecccccCCCceEEeCCCCcccHHHHHHHHh
Q 017405 312 DDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLY 348 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~ 348 (372)
+-+.|+.||+.+.++ ...|=||+|..+||-+.+.
T Consensus 42 ~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 446789999999999 7788999999999998763
No 130
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=39.72 E-value=21 Score=30.79 Aligned_cols=24 Identities=25% Similarity=0.616 Sum_probs=16.0
Q ss_pred cccccccccchhhHHHHHHHHHHHHhhhhhcc
Q 017405 75 QSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVS 106 (372)
Q Consensus 75 ~~~~~~s~~~i~lel~~~l~qiv~~i~vL~ls 106 (372)
.+.|.|| +.-|+++|+.|.++.|.
T Consensus 32 ~tpWNys--------iL~Ls~vvlvi~~~LLg 55 (125)
T PF15048_consen 32 ATPWNYS--------ILALSFVVLVISFFLLG 55 (125)
T ss_pred CCCcchH--------HHHHHHHHHHHHHHHHH
Confidence 4668888 77777777666555443
No 131
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=39.24 E-value=13 Score=34.86 Aligned_cols=43 Identities=26% Similarity=0.681 Sum_probs=34.7
Q ss_pred CCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccc
Q 017405 312 DDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLC 356 (372)
Q Consensus 312 ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlC 356 (372)
+-..|.+|-+-.-.| +|-=.|+-.+|..|+.+.++....||.|
T Consensus 180 nlk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCch
Confidence 346899998876655 2333588899999999999999999999
No 132
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=36.76 E-value=11 Score=27.21 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=6.8
Q ss_pred CCCcccccccccc
Q 017405 351 STCPLCKFNILKM 363 (372)
Q Consensus 351 ~tCPlCR~~I~~~ 363 (372)
..||+|.+++.+.
T Consensus 21 ~~CPlC~r~l~~e 33 (54)
T PF04423_consen 21 GCCPLCGRPLDEE 33 (54)
T ss_dssp EE-TTT--EE-HH
T ss_pred CcCCCCCCCCCHH
Confidence 3799999988653
No 133
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=35.27 E-value=40 Score=24.00 Aligned_cols=14 Identities=43% Similarity=0.878 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 017405 227 FVMICVGVACLIGI 240 (372)
Q Consensus 227 fvv~~val~~li~i 240 (372)
|+-||..++|++++
T Consensus 32 fvnfclilicllli 45 (52)
T PF04272_consen 32 FVNFCLILICLLLI 45 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555544
No 134
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=34.22 E-value=19 Score=24.13 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=16.9
Q ss_pred ceeeeecccccCCCc--------eEEeCCCCccc
Q 017405 314 AECCICLSAYDDGTE--------LRELPCLHHFH 339 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~--------lr~LPC~H~FH 339 (372)
.+|+=|...|+-+|+ ++--.|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 478889998886553 32233777774
No 135
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=33.64 E-value=33 Score=34.30 Aligned_cols=50 Identities=22% Similarity=0.376 Sum_probs=36.4
Q ss_pred CceeeeecccccCCCceEEeC--CCCcccHHHHHHHHhcCCCCcccccccccc
Q 017405 313 DAECCICLSAYDDGTELRELP--CLHHFHCSCLDKWLYINSTCPLCKFNILKM 363 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LP--C~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 363 (372)
...|+||-+.....+ .-.|| |+|.-|..|...=...+.+||.||++...+
T Consensus 249 ~~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcccccc-cccccccccccchhhhhhcccccCCCCCccCCccccC
Confidence 368999999874333 22455 777777778777777888999999766543
No 136
>PRK11827 hypothetical protein; Provisional
Probab=33.62 E-value=15 Score=27.70 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=15.4
Q ss_pred HHHHhcCCCCcccccccccc
Q 017405 344 DKWLYINSTCPLCKFNILKM 363 (372)
Q Consensus 344 d~WL~~~~tCPlCR~~I~~~ 363 (372)
++||..--.||.||.++...
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 56777777899999888653
No 137
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=33.32 E-value=46 Score=23.71 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 017405 228 VMICVGVACLIGI 240 (372)
Q Consensus 228 vv~~val~~li~i 240 (372)
+-||..++|++.+
T Consensus 33 vnf~lilicllli 45 (52)
T TIGR01294 33 INFCLILICLLLI 45 (52)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445554443
No 138
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=32.58 E-value=22 Score=33.97 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=31.2
Q ss_pred CceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCC--Cc
Q 017405 313 DAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINST--CP 354 (372)
Q Consensus 313 d~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~t--CP 354 (372)
+..|+|=+..+..+ +.--.|+|.|-.+=|.+.|+...+ ||
T Consensus 189 ~nrCpitl~p~~~p--ils~kcnh~~e~D~I~~~lq~~~trvcp 230 (275)
T COG5627 189 SNRCPITLNPDFYP--ILSSKCNHKPEMDLINKKLQVECTRVCP 230 (275)
T ss_pred cccCCcccCcchhH--HHHhhhcccccHHHHHHHhcCCceeecc
Confidence 56899999987776 222349999999999999986655 55
No 139
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=32.36 E-value=24 Score=23.61 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=16.4
Q ss_pred ceeeeecccccCCCc--------eEEeCCCCccc
Q 017405 314 AECCICLSAYDDGTE--------LRELPCLHHFH 339 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~--------lr~LPC~H~FH 339 (372)
.+|+-|-..|+-+++ ++--.|+|.|+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 368888888876542 22223777775
No 140
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.86 E-value=30 Score=22.50 Aligned_cols=10 Identities=30% Similarity=0.799 Sum_probs=6.8
Q ss_pred cCCCCccccc
Q 017405 349 INSTCPLCKF 358 (372)
Q Consensus 349 ~~~tCPlCR~ 358 (372)
....||+|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 3446999965
No 141
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=31.70 E-value=26 Score=22.16 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=10.5
Q ss_pred eeeeecccccCCCceEEeCCCCcccHHHH
Q 017405 315 ECCICLSAYDDGTELRELPCLHHFHCSCL 343 (372)
Q Consensus 315 eC~ICL~~y~~~d~lr~LPC~H~FH~~CI 343 (372)
.|.+|-.....+-..+-..|+-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47778777666334444569999999985
No 142
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=31.66 E-value=70 Score=23.86 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=32.9
Q ss_pred ceeeeecccccCCC-ceEEeCCC--CcccHHHHHHHHhcCCCCcccccccccc
Q 017405 314 AECCICLSAYDDGT-ELRELPCL--HHFHCSCLDKWLYINSTCPLCKFNILKM 363 (372)
Q Consensus 314 ~eC~ICL~~y~~~d-~lr~LPC~--H~FH~~CId~WL~~~~tCPlCR~~I~~~ 363 (372)
..|-.|-.++..+. +-++ |. .-|+.+|.+.-| +..||.|..++...
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 35777777776654 2222 44 579999999987 77899998887654
No 143
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=31.16 E-value=31 Score=26.00 Aligned_cols=13 Identities=46% Similarity=0.920 Sum_probs=9.7
Q ss_pred CCCCccccccccc
Q 017405 350 NSTCPLCKFNILK 362 (372)
Q Consensus 350 ~~tCPlCR~~I~~ 362 (372)
+..||+||..+..
T Consensus 2 k~~CPlCkt~~n~ 14 (61)
T PF05715_consen 2 KSLCPLCKTTLNV 14 (61)
T ss_pred CccCCcccchhhc
Confidence 5679999987743
No 144
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=30.88 E-value=14 Score=25.85 Aligned_cols=44 Identities=25% Similarity=0.495 Sum_probs=27.9
Q ss_pred eeeeecccccCCCceEEeCCCCcccHHHHHHHHh------cCCCCccccc
Q 017405 315 ECCICLSAYDDGTELRELPCLHHFHCSCLDKWLY------INSTCPLCKF 358 (372)
Q Consensus 315 eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~------~~~tCPlCR~ 358 (372)
.|.||...-.+++.|.=-.|+..||..|++.=.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3788888433333333234889999999876543 1235888853
No 145
>PRK10633 hypothetical protein; Provisional
Probab=30.00 E-value=1.7e+02 Score=23.32 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhheeEEEeCccccccCCCCchH
Q 017405 179 NLESANTFLSFLWWIVGFYWITASGETLISCSPQLY 214 (372)
Q Consensus 179 ~le~~ltlf~~iWfIvG~~Wv~~~~~~~~~~ap~Ly 214 (372)
+.-..+++++++||.+.-|. . +.....-.-|.-|
T Consensus 13 ~~al~L~l~y~~~W~~~aY~-~-~~~~~i~GlP~WF 46 (80)
T PRK10633 13 RWALGLTLLYLAAWLVAAYL-P-GNAPGFTGLPHWF 46 (80)
T ss_pred HHHHHHHHHHHHHHHHHHhc-c-CCCCcccCCcHHH
Confidence 34557899999999998773 3 2223344455433
No 146
>PRK05978 hypothetical protein; Provisional
Probab=29.78 E-value=31 Score=30.66 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=20.2
Q ss_pred CcccHHHHHHHHhcCCCCccccccccccCC
Q 017405 336 HHFHCSCLDKWLYINSTCPLCKFNILKMSN 365 (372)
Q Consensus 336 H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 365 (372)
|.|+ .+|+.+..||.|-.+......
T Consensus 43 ~LF~-----g~Lkv~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 43 KLFR-----AFLKPVDHCAACGEDFTHHRA 67 (148)
T ss_pred cccc-----cccccCCCccccCCccccCCc
Confidence 7786 799999999999887765543
No 147
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.71 E-value=1.9e+02 Score=29.48 Aligned_cols=15 Identities=20% Similarity=0.902 Sum_probs=11.6
Q ss_pred HHHHHHhhhe---eEEEe
Q 017405 186 FLSFLWWIVG---FYWIT 200 (372)
Q Consensus 186 lf~~iWfIvG---~~Wv~ 200 (372)
+|..+|.++| -+|+|
T Consensus 242 LF~I~~il~~g~~g~W~F 259 (372)
T KOG2927|consen 242 LFGITWILTGGKHGFWLF 259 (372)
T ss_pred HHHHHHHHhCCCCceEec
Confidence 4777888887 47888
No 148
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=28.66 E-value=34 Score=26.34 Aligned_cols=12 Identities=42% Similarity=0.960 Sum_probs=8.8
Q ss_pred cccHHHHHHHHh
Q 017405 337 HFHCSCLDKWLY 348 (372)
Q Consensus 337 ~FH~~CId~WL~ 348 (372)
-||..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=28.48 E-value=34 Score=37.80 Aligned_cols=49 Identities=29% Similarity=0.546 Sum_probs=31.9
Q ss_pred cCCCCceeeeecccccC----CC-----ceEEeC-CCCcccHHHHHHHHhcCCCCcccccccc
Q 017405 309 ISEDDAECCICLSAYDD----GT-----ELRELP-CLHHFHCSCLDKWLYINSTCPLCKFNIL 361 (372)
Q Consensus 309 ~~~ed~eC~ICL~~y~~----~d-----~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~ 361 (372)
+.+.+..|+-|...|.. |. .+-.-| |.|.-|..=|.+ .+.||+|...+.
T Consensus 1127 i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1127 IDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred CCccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 34566788888877741 21 222334 899888766544 678999987553
No 150
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=28.38 E-value=11 Score=37.16 Aligned_cols=37 Identities=27% Similarity=0.613 Sum_probs=30.9
Q ss_pred eeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCC
Q 017405 315 ECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINS 351 (372)
Q Consensus 315 eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~ 351 (372)
+|.+|+++|..+.......|.-.||..|+-.|++...
T Consensus 216 vC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 8999999998765556666777999999999998654
No 151
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=28.25 E-value=27 Score=26.24 Aligned_cols=14 Identities=36% Similarity=0.864 Sum_probs=10.8
Q ss_pred CCCCcccccccccc
Q 017405 350 NSTCPLCKFNILKM 363 (372)
Q Consensus 350 ~~tCPlCR~~I~~~ 363 (372)
...||+|+.+....
T Consensus 39 ~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 39 EPVCPLCKSPMVSG 52 (59)
T ss_pred CccCCCcCCccccc
Confidence 46799999887654
No 152
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=28.01 E-value=1.5e+02 Score=25.62 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=21.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhheeEE
Q 017405 173 DSSVAKNLESANTFLSFLWWIVGFYW 198 (372)
Q Consensus 173 ~s~~~~~le~~ltlf~~iWfIvG~~W 198 (372)
.+.+.+.+-+++++|+++||..+..|
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~~~~ 104 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAGYSF 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36788899999999999998777555
No 153
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=26.97 E-value=79 Score=25.82 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=33.7
Q ss_pred cCCCCceeeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCccccccccccCCc
Q 017405 309 ISEDDAECCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILKMSNE 366 (372)
Q Consensus 309 ~~~ed~eC~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~ 366 (372)
.......|-||-...... +|+|+..|-.+ +..|.+|-..|....+.
T Consensus 40 y~~~~~~C~~CK~~v~q~--------g~~YCq~CAYk----kGiCamCGKki~dtk~y 85 (90)
T PF10235_consen 40 YAPYSSKCKICKTKVHQP--------GAKYCQTCAYK----KGICAMCGKKILDTKNY 85 (90)
T ss_pred ccccCccccccccccccC--------CCccChhhhcc----cCcccccCCeecccccc
Confidence 344456899998876664 78899999544 78899998888655443
No 154
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=25.97 E-value=63 Score=31.54 Aligned_cols=43 Identities=26% Similarity=0.499 Sum_probs=24.5
Q ss_pred ceeeeecccccCCCceEEeC-CC-CcccHHHHHHHHh-cCCCCccc
Q 017405 314 AECCICLSAYDDGTELRELP-CL-HHFHCSCLDKWLY-INSTCPLC 356 (372)
Q Consensus 314 ~eC~ICL~~y~~~d~lr~LP-C~-H~FH~~CId~WL~-~~~tCPlC 356 (372)
.-|.||++---.|-.--.|. =. =.=|++|..+|=. -|..||-=
T Consensus 31 sfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~prs 76 (285)
T PF06937_consen 31 SFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPRS 76 (285)
T ss_pred eecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCcc
Confidence 45666666554442211121 11 1458999999955 47789943
No 155
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=25.12 E-value=1.5e+02 Score=22.95 Aligned_cols=12 Identities=8% Similarity=0.412 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhh
Q 017405 183 ANTFLSFLWWIV 194 (372)
Q Consensus 183 ~ltlf~~iWfIv 194 (372)
...+|+..||.+
T Consensus 27 ~iG~fftAwFf~ 38 (79)
T KOG4452|consen 27 GIGLFFTAWFFM 38 (79)
T ss_pred HHHHHHHHHHHh
Confidence 567788999876
No 156
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.08 E-value=66 Score=27.45 Aligned_cols=102 Identities=22% Similarity=0.222 Sum_probs=60.0
Q ss_pred hhhhhhHHhhHhhcccccccccchhhHHHHHHHHHHHHhhhhhcccCCCCCCCce--eehhhhchhhHHHHhhhhhhhee
Q 017405 62 RVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLR--LRIVGYALQCLFHVFCVSLEFKR 139 (372)
Q Consensus 62 ~~~~~~~~~~~~r~~~~~~s~~~i~lel~~~l~qiv~~i~vL~ls~~E~p~~PL~--~WiigY~~~cv~~l~~~~~~~r~ 139 (372)
..+|+-+..+-.+-+.|.=.- =.+|++.=.=||+.-+.-+.- -..||+ +||+ +.|.....++|..|..
T Consensus 19 tl~~s~~~kl~~~da~W~DKd--ellDViyW~rQVi~l~lGviw-----Gi~pL~G~l~iv---~f~~issgIvy~y~~~ 88 (129)
T KOG3415|consen 19 TLSESKAAKLTDSDAEWPDKD--ELLDVIYWIRQVIGLILGVIW-----GIIPLVGFLGIV---LFLGISSGIVYLYYAN 88 (129)
T ss_pred cccHHHHHhcCCccccCCCHH--HHHHHHHHHHHHHHHHHHHHH-----hhchhhhHHHHH---HHHHhhhhHHHHHHHH
Confidence 456667777777766773221 135566656666554322211 135665 5666 5567778888888877
Q ss_pred eccCCCcccCCCCCCCCCCCCCCccccccCCCCchhHHHHHHHHHHHHHHHHhhh
Q 017405 140 RRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIV 194 (372)
Q Consensus 140 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~le~~ltlf~~iWfIv 194 (372)
..+.+ +++++..+ ....+.+....++|.+.|.++
T Consensus 89 ~~~VD------------------Eee~GG~w---eL~kEGf~asfa~FlvtWIi~ 122 (129)
T KOG3415|consen 89 FLKVD------------------EEEYGGHW---ELLKEGFMASFALFLVTWIIF 122 (129)
T ss_pred HHhcC------------------HHHhCcHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 66532 23333322 244457777889999999765
No 157
>PF12326 EOS1: N-glycosylation protein; InterPro: IPR021100 This entry represents a family, containing several predicted transmembrane helices, which includes the fungal N-glycosylation protein EOS1. EOS1 is not essential for cell growth, but is necessary for tolerance to oxidative stress, and appears to be involved the N-glycosylation of cellular proteins [].
Probab=24.06 E-value=93 Score=27.70 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=27.6
Q ss_pred HHHHhhhhhccc-CCCCCCCceeehhhhchhhHHHHhhhhhhheeec
Q 017405 96 VIVAFAVLGVSI-NEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRR 141 (372)
Q Consensus 96 iv~~i~vL~ls~-~E~p~~PL~~WiigY~~~cv~~l~~~~~~~r~r~ 141 (372)
|......+.++. .++|+.||..||+ +.|.++..-..-.|-.-|
T Consensus 51 i~~t~~~l~ls~~s~d~~~~L~~WI~---Is~~lt~~yivq~~vTSN 94 (148)
T PF12326_consen 51 ICWTLEHLLLSGLSPDPRYPLPAWIL---ISCTLTISYIVQNWVTSN 94 (148)
T ss_pred HHHHHHHHHHHhcCCCccccchHHHH---HHHHHHHHHHHHHHHhcc
Confidence 444444555553 3448999999999 888887665554444433
No 158
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=23.85 E-value=42 Score=23.79 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=21.2
Q ss_pred eeeecccccCCCceEEeCCCCcccHHHHHHHHhcCCCCcccccccccc
Q 017405 316 CCICLSAYDDGTELRELPCLHHFHCSCLDKWLYINSTCPLCKFNILKM 363 (372)
Q Consensus 316 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 363 (372)
|.-|-+.+.+++.+ ...-+..||.+| -.|-.|+.++...
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEccc--------cccCCCCCccCCC
Confidence 44555555544322 223566777666 3466776666544
No 159
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=23.74 E-value=49 Score=20.76 Aligned_cols=18 Identities=50% Similarity=0.649 Sum_probs=14.2
Q ss_pred ccCcchhhhhhhHHhhHh
Q 017405 56 LREPSVRVRETAAEQLEE 73 (372)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~ 73 (372)
+..|+-.||++|++-+-+
T Consensus 9 l~D~~~~VR~~a~~~l~~ 26 (31)
T PF02985_consen 9 LNDPSPEVRQAAAECLGA 26 (31)
T ss_dssp HT-SSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 688999999999987643
No 160
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=23.65 E-value=51 Score=24.05 Aligned_cols=41 Identities=32% Similarity=0.792 Sum_probs=20.2
Q ss_pred eeeecccccCCC------ceEEeC-CCCcccHHHHHHHHhc-CCCCcccc
Q 017405 316 CCICLSAYDDGT------ELRELP-CLHHFHCSCLDKWLYI-NSTCPLCK 357 (372)
Q Consensus 316 C~ICL~~y~~~d------~lr~LP-C~H~FH~~CId~WL~~-~~tCPlCR 357 (372)
|--|+..+.++. ...+-| |+++|+.+| |..... --+||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 555666666652 234445 999999999 444332 23599884
No 161
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=22.37 E-value=96 Score=26.54 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=31.6
Q ss_pred HhhcccccccccchhhHHHHHHHHHHHHhhhhhcccCCCCCCCceeehhh-hchhhHHHHhhhhhh
Q 017405 72 EERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVG-YALQCLFHVFCVSLE 136 (372)
Q Consensus 72 ~~r~~~~~~s~~~i~lel~~~l~qiv~~i~vL~ls~~E~p~~PL~~Wiig-Y~~~cv~~l~~~~~~ 136 (372)
++|...|.+. ..+.+++.++++ .++-..-.|..|+.+..++ -.+-|+-+..+++|.
T Consensus 26 r~riinliiG--------~vT~l~VLvtii-~afvf~~~~p~p~~iffavcI~l~~~s~~lLI~WY 82 (118)
T PF10856_consen 26 RDRIINLIIG--------AVTSLFVLVTII-SAFVFPQDPPKPLHIFFAVCILLICISAILLIFWY 82 (118)
T ss_pred ccEEEEeehH--------HHHHHHHHHHHh-heEEecCCCCCceEEehHHHHHHHHHHHHhheeeh
Confidence 3566777766 666777766443 3444455556676665544 344555555555553
No 162
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=22.21 E-value=44 Score=27.07 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCCchHHHHHHHHHHhcCcccccCcchhhhhhhHHhhHhh
Q 017405 35 PPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEER 74 (372)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 74 (372)
|++|||.+|+.|--.+-.=- .-.+|.+|||.-=+++.+-
T Consensus 10 P~~lRG~Lt~wllEv~~GVy-Vg~~s~rVRe~lW~~v~~~ 48 (87)
T TIGR01873 10 PPRLRGRLALWLLEPRAGVY-VGGVSASVRERIWDYLAQH 48 (87)
T ss_pred ChhHhchhhhheeecCCCcE-EcCCCHHHHHHHHHHHHHh
Confidence 68999999998765432212 4478999999887777765
No 163
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=22.08 E-value=72 Score=31.93 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=34.2
Q ss_pred CCceeeeeccccc---------------CCC-ceEEeCCCCcccHHHHHHHHhc---------CCCCcccccccc
Q 017405 312 DDAECCICLSAYD---------------DGT-ELRELPCLHHFHCSCLDKWLYI---------NSTCPLCKFNIL 361 (372)
Q Consensus 312 ed~eC~ICL~~y~---------------~~d-~lr~LPC~H~FH~~CId~WL~~---------~~tCPlCR~~I~ 361 (372)
.+.+|++|+..=. .|- ...--||||+--.+=..-|-++ ++.||.|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 4578999986421 111 1224589999888888889764 456999987664
No 164
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=22.01 E-value=33 Score=27.18 Aligned_cols=14 Identities=50% Similarity=1.398 Sum_probs=7.8
Q ss_pred hhcccc-chhhhhhh
Q 017405 243 CCCLPC-ILGILYAL 256 (372)
Q Consensus 243 CCcLP~-Ii~~l~~~ 256 (372)
|||+|. ++++.+..
T Consensus 28 ~Cc~PlGi~Ai~~s~ 42 (82)
T PF04505_consen 28 CCCWPLGIVAIVYSS 42 (82)
T ss_pred HHHhhHHHHHheech
Confidence 677764 44555543
No 165
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=21.31 E-value=1.1e+02 Score=34.27 Aligned_cols=12 Identities=42% Similarity=1.375 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhc
Q 017405 234 VACLIGIAVCCC 245 (372)
Q Consensus 234 l~~li~ialCCc 245 (372)
+..++++.+|||
T Consensus 106 l~P~vg~~fCcC 117 (806)
T PF05478_consen 106 LMPLVGLCFCCC 117 (806)
T ss_pred HHHHHHHHHhcc
Confidence 344556677777
Done!