Query 017406
Match_columns 372
No_of_seqs 328 out of 1691
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 13:54:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 2.3E-46 7.8E-51 361.8 22.3 234 57-297 30-269 (306)
2 1f5q_B Gamma herpesvirus cycli 100.0 2.2E-45 7.7E-50 345.6 13.5 231 54-295 11-242 (252)
3 2f2c_A Cyclin homolog, V-cycli 100.0 8.8E-44 3E-48 335.1 23.0 228 59-295 14-248 (254)
4 1g3n_C V-cyclin; cyclin-depend 100.0 3.7E-44 1.3E-48 338.2 17.2 232 58-297 12-250 (257)
5 2w96_A G1/S-specific cyclin-D1 100.0 1E-42 3.6E-47 330.7 19.8 225 65-297 24-259 (271)
6 2cch_B Cyclin A2, cyclin-A; co 100.0 3.2E-42 1.1E-46 325.5 18.6 232 64-308 6-242 (260)
7 2b9r_A Human cyclin B1; cell c 100.0 1.5E-41 5.1E-46 322.5 17.7 232 64-308 6-241 (269)
8 1w98_B Cyclin E, G1/S-specific 100.0 7.9E-41 2.7E-45 319.8 21.2 220 59-295 10-242 (283)
9 2i53_A Cyclin K; cell cycle, t 100.0 1.2E-33 4E-38 266.1 17.5 201 90-296 35-252 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 1.8E-32 6.2E-37 258.0 22.3 198 91-297 26-242 (257)
11 3rgf_B Cyclin-C; protein kinas 100.0 1.9E-32 6.7E-37 261.9 20.4 193 91-296 38-243 (285)
12 1zp2_A RNA polymerase II holoe 100.0 5.5E-32 1.9E-36 251.7 15.2 189 96-297 28-222 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 8.3E-32 2.8E-36 265.1 13.5 198 91-297 33-249 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 2.9E-29 1E-33 243.9 20.1 197 92-296 53-262 (323)
15 1c9b_A General transcription f 99.9 1.2E-24 4E-29 198.3 19.4 185 95-295 4-189 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 1.4E-20 4.7E-25 170.4 19.8 185 94-294 7-194 (200)
17 3k7a_M Transcription initiatio 99.7 2.5E-17 8.6E-22 161.2 6.4 183 96-294 126-321 (345)
18 4bbr_M Transcription initiatio 99.3 4.6E-12 1.6E-16 123.8 8.2 183 97-295 127-322 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.1 9.5E-06 3.3E-10 76.6 10.0 109 98-211 76-185 (293)
20 1ais_B TFB TFIIB, protein (tra 95.3 0.093 3.2E-06 46.2 9.9 88 199-294 11-98 (200)
21 1c9b_A General transcription f 94.6 0.18 6.1E-06 44.6 9.8 87 200-294 8-94 (207)
22 4bbr_M Transcription initiatio 89.5 1.2 4.1E-05 42.8 8.9 89 198-294 127-215 (345)
23 1zp2_A RNA polymerase II holoe 86.2 3.4 0.00012 37.0 9.4 86 201-294 32-126 (235)
24 3k7a_M Transcription initiatio 84.2 0.62 2.1E-05 44.8 3.5 87 200-294 129-215 (345)
25 2i53_A Cyclin K; cell cycle, t 81.8 6.6 0.00022 35.4 9.4 87 101-192 153-250 (258)
26 3h4c_A Transcription factor TF 80.3 24 0.00084 31.3 11.8 148 99-257 15-170 (260)
27 2ivx_A Cyclin-T2; transcriptio 79.9 9.4 0.00032 34.4 9.7 86 101-191 148-238 (257)
28 3rgf_B Cyclin-C; protein kinas 78.0 4 0.00014 37.9 6.6 81 101-190 159-239 (285)
29 2pk2_A Cyclin-T1, protein TAT; 74.9 7.7 0.00026 37.3 7.9 85 102-191 156-245 (358)
30 1jkw_A Cyclin H; cell cycle, c 73.0 21 0.00071 33.6 10.3 86 203-294 63-155 (323)
31 2b9r_A Human cyclin B1; cell c 69.0 21 0.00073 32.4 9.1 86 202-294 43-130 (269)
32 2w96_A G1/S-specific cyclin-D1 67.0 32 0.0011 31.2 9.9 69 223-294 79-149 (271)
33 2f2c_A Cyclin homolog, V-cycli 67.0 31 0.0011 30.9 9.8 86 202-294 57-144 (254)
34 2cch_B Cyclin A2, cyclin-A; co 62.7 21 0.00072 32.2 7.8 69 223-294 61-131 (260)
35 1g3n_C V-cyclin; cyclin-depend 60.1 26 0.00089 31.5 7.9 72 220-294 70-143 (257)
36 3g33_B CCND3 protein; Ser/Thr 59.9 42 0.0014 31.2 9.5 68 224-294 94-163 (306)
37 1w98_B Cyclin E, G1/S-specific 49.3 64 0.0022 29.4 8.7 72 220-294 69-143 (283)
38 3m03_A ORC6, origin recognitio 42.5 53 0.0018 25.4 5.7 76 103-187 6-87 (95)
39 1f5q_B Gamma herpesvirus cycli 32.6 1.6E+02 0.0055 26.4 8.4 65 227-294 75-141 (252)
40 3o0g_D Cyclin-dependent kinase 20.9 2.7E+02 0.0094 22.8 6.7 75 98-175 29-113 (149)
41 3m03_A ORC6, origin recognitio 20.8 1.6E+02 0.0056 22.5 5.1 50 241-294 43-92 (95)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-46 Score=361.82 Aligned_cols=234 Identities=26% Similarity=0.322 Sum_probs=197.8
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCC--CC-CCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcc
Q 017406 57 LQEHDLFWDDNELLSLICKEKKENF--VP-SDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSF 133 (372)
Q Consensus 57 ~~~~~~f~~~e~l~~Ll~kE~~~~~--~~-~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v 133 (372)
.-|++++|++|++.+|+++|.++.| +| ...|.+ +++.+|..+|+||.+|+.+|+++++|+++||+|||||++...+
T Consensus 30 ~~dp~l~~~~~i~~~l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v 108 (306)
T 3g33_B 30 GPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQRE-IKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPT 108 (306)
T ss_dssp -------CHHHHHHHHHHHGGGGSCSSCCTTTSTTT-CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcccchHHHHHHHHHHHHHhCCCcHHHhhcCcc-CCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCC
Confidence 3467778999999999999999987 45 445655 9999999999999999999999999999999999999999988
Q ss_pred cCCCCchhHHHHHHHHHhhhhccccCCccccce-eecCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhC
Q 017406 134 QKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLG 212 (372)
Q Consensus 134 ~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v~~~~~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~ 212 (372)
.+.+ +||+|+|||+||+|+||..+|.+.++ .+++ +.|++++|++||+.||++|+|++++|||++||.+|++.++
T Consensus 109 ~~~~---lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~--~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~ 183 (306)
T 3g33_B 109 RKAQ---LQLLGAVCMLLASKLRETTPLTIEKLCIYTD--HAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLS 183 (306)
T ss_dssp CGGG---HHHHHHHHHHHHHHHHCSSCCCTTHHHHHTT--TSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSS
T ss_pred cHHH---HHHHHHHHHHHHHHhccCCCCCHHHHHHHhc--cCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcC
Confidence 7655 99999999999999999988899998 5554 4568999999999999999999999999999999999988
Q ss_pred CCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCC--cCcccchhhhcCCChHHHHHHHHHHHH
Q 017406 213 LKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNP--VEHQNLLMGVLNISQQDKLKECYLLIL 290 (372)
Q Consensus 213 ~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~--~~~~~~L~~~~~i~~~e~v~~C~~~i~ 290 (372)
............+.+++..++.++.|++|+||+||||||++|+..++.... ..|.+.|..++|++. ++|.+|++.|.
T Consensus 184 ~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~-~~l~~c~~~I~ 262 (306)
T 3g33_B 184 LPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEV-DCLRACQEQIE 262 (306)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCH-HHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCH-HHHHHHHHHHH
Confidence 765433223355778888899999999999999999999999999885432 235677888999999 99999999999
Q ss_pred HHHhcCC
Q 017406 291 ELSRGNG 297 (372)
Q Consensus 291 el~~~~~ 297 (372)
+++.+..
T Consensus 263 ~l~~~~l 269 (306)
T 3g33_B 263 AALRESL 269 (306)
T ss_dssp HHHHTC-
T ss_pred HHHHHHH
Confidence 9998754
No 2
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.2e-45 Score=345.55 Aligned_cols=231 Identities=16% Similarity=0.132 Sum_probs=194.5
Q ss_pred CCccccCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcc
Q 017406 54 PPVLQEHDLFWDDNELLSLICKEKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSF 133 (372)
Q Consensus 54 ~~~~~~~~~f~~~e~l~~Ll~kE~~~~~~~~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v 133 (372)
+....|++++ +|+++.+|+++|.++.| ...|. ++++.+|.++|+||.+|+.+|+++++|+++||+|+||||+...+
T Consensus 11 ~~~~~dp~l~-~d~i~~~l~~~E~~~~p--~~~q~-~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v 86 (252)
T 1f5q_B 11 DSSLLNEEDC-RQMIYRSEREHDARMVG--VNVDQ-HFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRI 86 (252)
T ss_dssp SCTTCCHHHH-HHHHHHHHHHHHHHHSS--SSHHH-HHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCC
T ss_pred CcCcCCHHHh-HHHHHHHHHHHHHHhCc--CccCC-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCc
Confidence 3344566665 56999999999999987 33333 48899999999999999999999999999999999999999998
Q ss_pred cCCCCchhHHHHHHHHHhhhhccccCCccccce-eecCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhC
Q 017406 134 QKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLG 212 (372)
Q Consensus 134 ~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v~~~~~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~ 212 (372)
++.+ +||+|+|||+||+|+||+.+|.+.++ .+++ +.|++++|++||+.||++|+|++++|||++|+.+|++.++
T Consensus 87 ~~~~---lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~--~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~ 161 (252)
T 1f5q_B 87 DREN---YQSTAAVALHIAGKVRAYMPIKATQLAYLCG--GATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMH 161 (252)
T ss_dssp CGGG---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHHC--TTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTT
T ss_pred CHHH---HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcC
Confidence 8766 99999999999999999999999888 5555 4568999999999999999999999999999999999987
Q ss_pred CCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCChHHHHHHHHHHHHHH
Q 017406 213 LKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQQDKLKECYLLILEL 292 (372)
Q Consensus 213 ~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~e~v~~C~~~i~el 292 (372)
........+...+.+++..++.|+.|+.|+||+|||||+.+++....+. ...|...|..++|+++ ++|.+|++.|.++
T Consensus 162 ~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~~-~~~~~~~L~~~t~~~~-~~l~~C~~~i~~~ 239 (252)
T 1f5q_B 162 APREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYDY-YENRIDGVCKSLYITK-EELHQCCDLVDIA 239 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCHH-HHHHHHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCCc-hhhHHHHHHHHHCcCH-HHHHHHHHHHHHH
Confidence 6544322345678888899999999999999999999976665321110 1123567888999999 9999999999999
Q ss_pred Hhc
Q 017406 293 SRG 295 (372)
Q Consensus 293 ~~~ 295 (372)
+..
T Consensus 240 l~~ 242 (252)
T 1f5q_B 240 IVS 242 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=8.8e-44 Score=335.11 Aligned_cols=228 Identities=15% Similarity=0.177 Sum_probs=196.6
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCC--CC-CCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccC
Q 017406 59 EHDLFWDDNELLSLICKEKKENF--VP-SDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQK 135 (372)
Q Consensus 59 ~~~~f~~~e~l~~Ll~kE~~~~~--~~-~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~ 135 (372)
|+.+++++|++. |+++|.++.| +| ...|.+ +++.+|..+|+||.+|+.+|+++++|+++||+|+|||++...+++
T Consensus 14 dp~l~~~~~i~~-l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~ 91 (254)
T 2f2c_A 14 DSTTMKDPRVLN-NLKLRELLLPKFTSLWEIQTE-VTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTK 91 (254)
T ss_dssp CHHHHTCHHHHH-HHHHHHTTSCCCSSTTTTCSS-CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCT
T ss_pred CcccccHHHHHH-HHHHHHhhCCCchhhhhcCcc-CCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCH
Confidence 444567899999 9999999988 45 334554 999999999999999999999999999999999999999999988
Q ss_pred CCCchhHHHHHHHHHhhhhccccCCccccce-eecCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCC
Q 017406 136 DKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLK 214 (372)
Q Consensus 136 ~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v~~~~~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~~~ 214 (372)
.+ +||+|+|||+||+|+||..+|.+.++ .++ .+.|++++|.+||+.||++|+|++++|||++|+.+|++.++.+
T Consensus 92 ~~---lqLv~~acl~iA~K~eE~~~p~~~d~~~~~--~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~ 166 (254)
T 2f2c_A 92 KT---LQKIGAACVLIGSKIRTVKPMTVSKLTYLS--CDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIP 166 (254)
T ss_dssp TT---HHHHHHHHHHHHHHHHCSSCCCHHHHSTTC-----CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCC
T ss_pred HH---ccHHHHHHHHHHHHhcccCCCCHHHHHHHh--CCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC
Confidence 77 99999999999999999989999998 444 4456899999999999999999999999999999999999876
Q ss_pred CcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCc---ccchhhhcCCChHHHHHHHHHHHHH
Q 017406 215 THLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEH---QNLLMGVLNISQQDKLKECYLLILE 291 (372)
Q Consensus 215 ~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~---~~~L~~~~~i~~~e~v~~C~~~i~e 291 (372)
......+...+.++++.++.|+.|++|+||+|||||+++|+...+ .....| ...|..++|+++ ++|.+|++.|.+
T Consensus 167 ~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~-~~~~~w~~~~~~l~~~tg~~~-~~l~~c~~~i~~ 244 (254)
T 2f2c_A 167 EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDN-TNCRPWTCYLEDLSSILNFST-NTVRTVKDQVSE 244 (254)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTC-CSSCCTHHHHHHHHHHHTCCH-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcC-CCCCChHHHHHHHHHHHCcCH-HHHHHHHHHHHH
Confidence 543222235577888889999999999999999999999998752 222234 778889999999 999999999999
Q ss_pred HHhc
Q 017406 292 LSRG 295 (372)
Q Consensus 292 l~~~ 295 (372)
++.+
T Consensus 245 ~~~~ 248 (254)
T 2f2c_A 245 AFSL 248 (254)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9865
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.7e-44 Score=338.24 Aligned_cols=232 Identities=16% Similarity=0.125 Sum_probs=199.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCC--CC-CCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCccc
Q 017406 58 QEHDLFWDDNELLSLICKEKKENF--VP-SDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQ 134 (372)
Q Consensus 58 ~~~~~f~~~e~l~~Ll~kE~~~~~--~~-~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~ 134 (372)
-|+.++|++|++ +|+++|.++.| +| ...|.+ +++.+|..+|+||.+|+.+|+++++|+++||+|+|||++...++
T Consensus 12 ~dp~~~~~~~i~-~l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~ 89 (257)
T 1g3n_C 12 LDPTLCEDRIFY-NILEIEPRFLTSDSVFGTFQQS-LTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVS 89 (257)
T ss_dssp ----CHHHHHHH-HHHHHGGGGCCCGGGHHHHTSS-CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCccccHHHHH-HHHHHHHHhCCChhHHHhcCcc-CCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCC
Confidence 456677889999 99999999988 44 334555 99999999999999999999999999999999999999999888
Q ss_pred CCCCchhHHHHHHHHHhhhhccccCCccccce-eecCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCC
Q 017406 135 KDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGL 213 (372)
Q Consensus 135 ~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v~~~~~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~~ 213 (372)
+.+ +||+|+|||+||+|+||..+|.+.++ .++++ .|++++|.+||+.||++|+|++++|||++|+.+|++.++.
T Consensus 90 ~~~---lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~--~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~ 164 (257)
T 1g3n_C 90 KEH---FQKTGSACLLVASKLRSLTPISTSSLCYAAAD--SFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVG 164 (257)
T ss_dssp HHH---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT--CSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSC
T ss_pred HHH---HHHHHHHHHHHHHHHccccCCCHHHHHHHHCC--CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCC
Confidence 766 99999999999999999999999999 56554 4589999999999999999999999999999999999987
Q ss_pred CCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCC---CcCcccchhhhcCCChHHHHHHHHHHHH
Q 017406 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCN---PVEHQNLLMGVLNISQQDKLKECYLLIL 290 (372)
Q Consensus 214 ~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~---~~~~~~~L~~~~~i~~~e~v~~C~~~i~ 290 (372)
+......+...+.++++.++.++.|++|+||+|||||+++|+..++... ...|...|..++|++. ++|.+|++.|.
T Consensus 165 ~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~-~~l~~c~~~i~ 243 (257)
T 1g3n_C 165 GSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDV-SVLQAAVEQIL 243 (257)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCH-HHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCH-HHHHHHHHHHH
Confidence 6543222335577888889999999999999999999999998887321 2468889999999999 99999999999
Q ss_pred HHHhcCC
Q 017406 291 ELSRGNG 297 (372)
Q Consensus 291 el~~~~~ 297 (372)
+++.+..
T Consensus 244 ~l~~~~~ 250 (257)
T 1g3n_C 244 TSVSDFD 250 (257)
T ss_dssp HHHHHCC
T ss_pred HHHHHCC
Confidence 9997643
No 5
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=1e-42 Score=330.71 Aligned_cols=225 Identities=23% Similarity=0.342 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHHHhcCC--CC-CCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchh
Q 017406 65 DDNELLSLICKEKKENF--VP-SDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMG 141 (372)
Q Consensus 65 ~~e~l~~Ll~kE~~~~~--~~-~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~l 141 (372)
++|++.+|+++|.++.| +| ...|.+ +++.+|..+++||.+|+.+|+++++|+++||+|+|||++...+++.+ +
T Consensus 24 ~~~i~~~l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~---l 99 (271)
T 2w96_A 24 NDRVLRAMLKAEETCAPSVSYFKCVQKE-VLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSR---L 99 (271)
T ss_dssp -CHHHHHHHHHHHHTCCCTTHHHHTCSS-CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTT---H
T ss_pred HHHHHHHHHHHHHHhCCCchHHHhcCCc-CCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHH---H
Confidence 67999999999999988 44 345655 89999999999999999999999999999999999999999998887 9
Q ss_pred HHHHHHHHHhhhhccccCCccccce-eecCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHH
Q 017406 142 QLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWE 220 (372)
Q Consensus 142 qLvavaCL~LAaK~eE~~vP~l~dl-~v~~~~~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~~~~~~~~~ 220 (372)
||+|+|||+||+|+||+.+|.+.++ .+++ +.|++++|.+||+.||++|+|++++|||++|+.+|++.++..... .+
T Consensus 100 qlv~~acL~iAsK~EE~~p~~~~~~~~~~~--~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~-~~ 176 (271)
T 2w96_A 100 QLLGATCMFVASKMKETIPLTAEKLCIYTD--NSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEEN-KQ 176 (271)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHTT--TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHH-HH
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchH-HH
Confidence 9999999999999999988888888 4444 456899999999999999999999999999999999998865432 22
Q ss_pred HH-HHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCC--CCCc----CcccchhhhcCCChHHHHHHHHHHHHHHH
Q 017406 221 FL-YRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEP--CNPV----EHQNLLMGVLNISQQDKLKECYLLILELS 293 (372)
Q Consensus 221 ~l-~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~--~~~~----~~~~~L~~~~~i~~~e~v~~C~~~i~el~ 293 (372)
.+ ..+.+++..++.|+.|++|+||.||||||++|+..++. .... .|.+.|..++|++. ++|.+|++.|.+++
T Consensus 177 ~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~-~~l~~c~~~i~~l~ 255 (271)
T 2w96_A 177 IIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDP-DCLRACQEQIEALL 255 (271)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCH-HHHHHHHHHHHHHH
Confidence 33 45777888888999999999999999999999987752 1111 24456788899999 99999999999999
Q ss_pred hcCC
Q 017406 294 RGNG 297 (372)
Q Consensus 294 ~~~~ 297 (372)
..+.
T Consensus 256 ~~~~ 259 (271)
T 2w96_A 256 ESSL 259 (271)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 8754
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=3.2e-42 Score=325.54 Aligned_cols=232 Identities=25% Similarity=0.281 Sum_probs=203.2
Q ss_pred CCHHHHHHHHHHHHhcCC--CCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchh
Q 017406 64 WDDNELLSLICKEKKENF--VPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMG 141 (372)
Q Consensus 64 ~~~e~l~~Ll~kE~~~~~--~~~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~l 141 (372)
|.+|++.+|.+.|.++.| +|-..|.+ +++.+|..+|+||.+|+.+|+++++|+++||+|+|||++...+++.+ +
T Consensus 6 Y~~di~~~l~~~E~~~~p~~~y~~~q~~-i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~---l 81 (260)
T 2cch_B 6 YHEDIHTYLREMEVKCKPKVGYMKKQPD-ITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---L 81 (260)
T ss_dssp THHHHHHHHHHHHHHTCCCTTGGGGCSS-CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHH---H
T ss_pred HHHHHHHHHHHHHhhcCCCchhhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHH---H
Confidence 578999999999999987 55333444 99999999999999999999999999999999999999999998777 9
Q ss_pred HHHHHHHHHhhhhccccCCccccce-eecCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHH
Q 017406 142 QLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWE 220 (372)
Q Consensus 142 qLvavaCL~LAaK~eE~~vP~l~dl-~v~~~~~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~~~~~~~~~ 220 (372)
||+|+|||+||+|+||+.+|.+.++ .++++ .|++++|.+||+.||++|+|++++|||++|+.+|++.++.++. .
T Consensus 82 qlv~~acl~iA~K~ee~~~~~~~d~~~i~~~--~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~---~ 156 (260)
T 2cch_B 82 QLVGTAAMLLASKFEEIYPPEVAEFVYITDD--TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC---K 156 (260)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTS--SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCH---H
T ss_pred hHHHHHHHHHHHHhcccCCCCHHHHHHHHcC--CcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChH---H
Confidence 9999999999999999999999999 55554 4689999999999999999999999999999999999876542 4
Q ss_pred HHHHHHHHHHHHhcchh-ccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCChHHHHHHHHHHHHHHHhcCC-C
Q 017406 221 FLYRCEHLLLSVIADSR-FMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQQDKLKECYLLILELSRGNG-S 298 (372)
Q Consensus 221 ~l~~~~~ll~~~l~d~~-fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~e~v~~C~~~i~el~~~~~-~ 298 (372)
....+.++++.++.++. |++|+||.|||||+++|...++. ..|...+..++|+++ ++|.+|++.|.+++.+.. .
T Consensus 157 ~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~---~~w~~~l~~~~g~~~-~~i~~~~~~l~~~~~~~~~~ 232 (260)
T 2cch_B 157 VESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG---QSWPESLIRKTGYTL-ESLKPCLMDLHQTYLKAPQH 232 (260)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS---CCSCHHHHHHHCCCH-HHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC---CcchHHHHHHhCcCH-HHHHHHHHHHHHHHHhcCCc
Confidence 45667788888888999 99999999999999999998864 358888999999999 999999999999987654 2
Q ss_pred CCcccccccC
Q 017406 299 QNQSCKRKHF 308 (372)
Q Consensus 299 ~~~~~~~k~~ 308 (372)
..++.++||.
T Consensus 233 ~~~~i~~Ky~ 242 (260)
T 2cch_B 233 AQQSIREKYK 242 (260)
T ss_dssp SCCHHHHHHT
T ss_pred chHHHHHHHC
Confidence 3455677774
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=1.5e-41 Score=322.55 Aligned_cols=232 Identities=19% Similarity=0.266 Sum_probs=201.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHH
Q 017406 64 WDDNELLSLICKEKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQL 143 (372)
Q Consensus 64 ~~~e~l~~Ll~kE~~~~~~~~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqL 143 (372)
|.+|++.+|.++|.++.|+...+..++++..+|..+++||.+|+.+|+++++|+++||+|+|||++...+++.+ +||
T Consensus 6 Y~~di~~~l~~~E~~~~~~~~y~~~q~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~---lql 82 (269)
T 2b9r_A 6 YVKDIYAYLRQLEAAQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKM---LQL 82 (269)
T ss_dssp -CCTTTTTHHHHHHTTCCCTTTTSSSSSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGG---HHH
T ss_pred HHHHHHHHHHHHHHhhCCCcccccCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHH---hhH
Confidence 45678889999999997633333333699999999999999999999999999999999999999999998777 999
Q ss_pred HHHHHHHhhhhccccCCccccce-eecCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHH
Q 017406 144 VAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFL 222 (372)
Q Consensus 144 vavaCL~LAaK~eE~~vP~l~dl-~v~~~~~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~~~~~~~~~~l 222 (372)
+|+|||+||||+||+.+|.+.++ .+++. .|++++|.+||+.||++|+|++++|||++|+.+|++.++.+ .+..
T Consensus 83 v~~acL~iA~K~eE~~~p~~~d~~~~~~~--~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~----~~~~ 156 (269)
T 2b9r_A 83 VGVTAMFIASKYEEMYPPEIGDFAFVTDN--TYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD----VEQH 156 (269)
T ss_dssp HHHHHHHHHHHHHCSSCCCHHHHHHHTCS--SSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC----HHHH
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC----HHHH
Confidence 99999999999999999999999 55544 46899999999999999999999999999999999877643 2455
Q ss_pred HHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCChHHHHHHHHHHHHHHHhcCC---CC
Q 017406 223 YRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQQDKLKECYLLILELSRGNG---SQ 299 (372)
Q Consensus 223 ~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~e~v~~C~~~i~el~~~~~---~~ 299 (372)
..+.++++.++.++.|++|+||.||||||++|...++.. .|...+..++|+++ ++|.+|++.|.+++.... ..
T Consensus 157 ~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~---~w~~~l~~~tg~~~-~~l~~~~~~l~~~~~~~~~~~~~ 232 (269)
T 2b9r_A 157 TLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG---EWTPTLQHYLSYTE-ESLLPVMQHLAKNVVMVNQGLTK 232 (269)
T ss_dssp HHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC---CSCTTHHHHSCCCS-STTTTHHHHHHHHHHHTTTSCCS
T ss_pred HHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC---CCCHHHHHHHCCCH-HHHHHHHHHHHHHHHHhcCCCcc
Confidence 678889999999999999999999999999999988753 58889999999999 999999999999886533 23
Q ss_pred CcccccccC
Q 017406 300 NQSCKRKHF 308 (372)
Q Consensus 300 ~~~~~~k~~ 308 (372)
.++.++||.
T Consensus 233 ~~ai~~Ky~ 241 (269)
T 2b9r_A 233 HMTVKNKYA 241 (269)
T ss_dssp CCHHHHHTT
T ss_pred hHHHHHHhc
Confidence 455677774
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=7.9e-41 Score=319.79 Aligned_cols=220 Identities=21% Similarity=0.322 Sum_probs=187.9
Q ss_pred cCCCCCCH--HHHHHHHHHHHhcCC--CCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-Ccc
Q 017406 59 EHDLFWDD--NELLSLICKEKKENF--VPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILS-HSF 133 (372)
Q Consensus 59 ~~~~f~~~--e~l~~Ll~kE~~~~~--~~~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~-~~v 133 (372)
+++++|++ |++.+|+++|.++.| +|-..|. ++++.+|..+++||.+|+.+|++.++|+++||+|||||++. ..+
T Consensus 10 ~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v 88 (283)
T 1w98_B 10 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHP-LLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENV 88 (283)
T ss_dssp SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCT-TCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCC
T ss_pred CcchhhcCHHHHHHHHHHHHHHhCCCchhhccCC-CCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCC
Confidence 46677775 999999999999987 4433333 38999999999999999999999999999999999999998 467
Q ss_pred cCCCCchhHHHHHHHHHhhhhccccCCccccce-eecCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhC
Q 017406 134 QKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLG 212 (372)
Q Consensus 134 ~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v~~~~~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~ 212 (372)
++. .+||+|+|||+||+|+||..+|.+.++ .++++ .|++++|.+||+.||++|+|++++|||++|+.+|++.++
T Consensus 89 ~~~---~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~--~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~ 163 (283)
T 1w98_B 89 VKT---LLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDG--ACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAY 163 (283)
T ss_dssp CGG---GHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTT--SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHT
T ss_pred CHH---HHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhc
Confidence 644 499999999999999999999999998 55544 468999999999999999999999999999999999987
Q ss_pred CCCcc-------cHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCChHHHHHHH
Q 017406 213 LKTHL-------HWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQQDKLKEC 285 (372)
Q Consensus 213 ~~~~~-------~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~e~v~~C 285 (372)
.++.. .......+.++++.++.|+.|++|+||+||||||++|. |.+.|..++|+++ ++|.+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~----------~~~~l~~~tg~~~-~~i~~c 232 (283)
T 1w98_B 164 LNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS----------SSELMQKVSGYQW-CDIENC 232 (283)
T ss_dssp CCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS----------CHHHHHHHSCCCH-HHHHHH
T ss_pred cCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH----------ChHHHHHHhCCCH-HHHHHH
Confidence 64421 11223345578888889999999999999999999884 3567888999999 999999
Q ss_pred HHHHHHHHhc
Q 017406 286 YLLILELSRG 295 (372)
Q Consensus 286 ~~~i~el~~~ 295 (372)
++.|.+++..
T Consensus 233 ~~~l~~~~~~ 242 (283)
T 1w98_B 233 VKWMVPFAMV 242 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888763
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.2e-33 Score=266.08 Aligned_cols=201 Identities=19% Similarity=0.231 Sum_probs=169.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhccccCCcccccee-e
Q 017406 90 EILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQ-V 168 (372)
Q Consensus 90 ~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl~-v 168 (372)
+....+|..+++||.+|+.+++++++|+++|++|||||++...+.+.+ +|++|+|||+||||+||. +|.+.++. +
T Consensus 35 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~eE~-~~~l~d~~~~ 110 (258)
T 2i53_A 35 ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFP---RYVTGACCLFLAGKVEET-PKKCKDIIKT 110 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcC---HHHHHHHHHHHHHccccc-cccHHHHHHH
Confidence 377899999999999999999999999999999999999999998877 999999999999999996 77788873 2
Q ss_pred c---CCCccc------cHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhcc
Q 017406 169 K---DPKYVF------EAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFM 239 (372)
Q Consensus 169 ~---~~~~~f------t~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl 239 (372)
+ .....| ++++|.+||+.||++|+|+++++||++|+.+|++.++.......++...|.+++..++.++.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l 190 (258)
T 2i53_A 111 ARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSL 190 (258)
T ss_dssp HHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred HHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchh
Confidence 1 111112 4789999999999999999999999999999999987654322356788889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcCcc-----cchhhh--cCCChHHHHHHHHHHHHHHHhcC
Q 017406 240 CYLPSTLATATMLHTIQEVEPCNPVEHQ-----NLLMGV--LNISQQDKLKECYLLILELSRGN 296 (372)
Q Consensus 240 ~~~PS~IAaAal~~a~~~l~~~~~~~~~-----~~L~~~--~~i~~~e~v~~C~~~i~el~~~~ 296 (372)
+|+||.||+|||++|...++... ..|. ..|+.. .|++. ++|.+|++.|.+++...
T Consensus 191 ~~~Ps~IAaAai~lA~~~~~~~~-~~~~~~~~~~~W~~~~~~~~~~-~~l~~~~~~il~ly~~~ 252 (258)
T 2i53_A 191 QWEPEIIAVAVMYLAGRLCKFEI-QEWTSKPMYRRWWEQFVQDVPV-DVLEDICHQILDLYSQG 252 (258)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCG-GGGBSSCCSSCGGGGTSSSCCH-HHHHHHHHHHHTTTSSS
T ss_pred ccChHHHHHHHHHHHHHHhCCCC-CccccCCCcccHHHHhccCCCH-HHHHHHHHHHHHHHhcc
Confidence 99999999999999999887431 2232 234443 49999 99999999999998764
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.8e-32 Score=258.02 Aligned_cols=198 Identities=18% Similarity=0.218 Sum_probs=164.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhccccCCccccce-ee-
Q 017406 91 ILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QV- 168 (372)
Q Consensus 91 i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v- 168 (372)
....+|..+++||.+|+.+|+++++|+++|++|||||++...+.+.+ +|++|+|||+||||+||+ +|.+.++ .+
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~EE~-p~~l~d~~~~~ 101 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFN---KNIISSTALFLAAKVEEQ-ARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhC---HHHHHHHHHHHHhccccC-CcCHHHHHHHH
Confidence 45689999999999999999999999999999999999999998777 999999999999999999 7888887 22
Q ss_pred -------------cCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc-
Q 017406 169 -------------KDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIA- 234 (372)
Q Consensus 169 -------------~~~~~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~- 234 (372)
.+..|.+++++|.+||+.||++|+|+++++||+.|+..|++.++.. .++...+.+++..++.
T Consensus 102 ~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~----~~~~~~A~~~~~~sl~~ 177 (257)
T 2ivx_A 102 HACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS----KDLAQTSYFMATNSLHL 177 (257)
T ss_dssp HHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC----cHHHHHHHHHHHhhhhc
Confidence 2334444599999999999999999999999999999999998754 2556777778777764
Q ss_pred chhccCCCHHHHHHHHHHHHHHhcCCCCCc-Ccccchhh--hcCCChHHHHHHHHHHHHHHHhcCC
Q 017406 235 DSRFMCYLPSTLATATMLHTIQEVEPCNPV-EHQNLLMG--VLNISQQDKLKECYLLILELSRGNG 297 (372)
Q Consensus 235 d~~fl~~~PS~IAaAal~~a~~~l~~~~~~-~~~~~L~~--~~~i~~~e~v~~C~~~i~el~~~~~ 297 (372)
+..++.|+||.||+|||++|...++...+. .....|.. ..+++. ++|.+|++.|.+++....
T Consensus 178 ~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~-~~l~~~~~~i~~~~~~~~ 242 (257)
T 2ivx_A 178 TTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTL-ELLDELTHEFLQILEKTP 242 (257)
T ss_dssp CCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCH-HHHHHHHHHHHHHHHTSH
T ss_pred ccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCH-HHHHHHHHHHHHHHHhCh
Confidence 445899999999999999999988733211 01122333 348999 999999999999997643
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=261.90 Aligned_cols=193 Identities=18% Similarity=0.165 Sum_probs=170.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhccccCCccccce-ee-
Q 017406 91 ILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QV- 168 (372)
Q Consensus 91 i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v- 168 (372)
....+|..+++||.+|+.+++++++|+++|++|||||++...+.+.+ +|++|+|||+||||+||+.+|.+.++ .+
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~~~~~~~di~~~~ 114 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSID---PVLMAPTCVFLASKVEEFGVVSNTRLIAAA 114 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSC---HHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcC---HHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 34579999999999999999999999999999999999999998777 99999999999999999977777676 22
Q ss_pred -----------cCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchh
Q 017406 169 -----------KDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSR 237 (372)
Q Consensus 169 -----------~~~~~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~ 237 (372)
....|.+++++|++||+.||++|+|+++++||+.||..|++.++.. .++...|..++..++.+..
T Consensus 115 ~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~----~~~~~~A~~~l~~sl~t~~ 190 (285)
T 3rgf_B 115 TSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE----DMLLPLAWRIVNDTYRTDL 190 (285)
T ss_dssp HHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH----HHHHHHHHHHHHHHTTSSH
T ss_pred HHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHccCh
Confidence 2445677899999999999999999999999999999999999853 3566788889999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCChHHHHHHHHHHHHHHHhcC
Q 017406 238 FMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQQDKLKECYLLILELSRGN 296 (372)
Q Consensus 238 fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~e~v~~C~~~i~el~~~~ 296 (372)
++.|+||.||+|||++|...++... ..|...+|++. ++|.+|++.|.+++...
T Consensus 191 ~l~~~Ps~IAaAaiylA~~~~~~~~-----~~W~~~~~~~~-~~l~~~~~~il~ly~~~ 243 (285)
T 3rgf_B 191 CLLYPPFMIALACLHVACVVQQKDA-----RQWFAELSVDM-EKILEIIRVILKLYEQW 243 (285)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTTCCC-----HHHHHTSCSCH-HHHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHcCCCh-----hhHHHHHCCCH-HHHHHHHHHHHHHHHhc
Confidence 9999999999999999999876432 34566789999 99999999999999763
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.5e-32 Score=251.67 Aligned_cols=189 Identities=15% Similarity=0.119 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccC-CCCchhHHHHHHHHHhhhhccccCCccccce-eecC---
Q 017406 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQK-DKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKD--- 170 (372)
Q Consensus 96 R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~-~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v~~--- 170 (372)
|..+++||.+|+..+++++.|+++|++|||||++...+.+ .+ +|++|+|||+||||+||+ ++.+.++ .++.
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~---~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~ 103 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFS---LEALVATCIYLSCKVEEC-PVHIRTICNEANDLW 103 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccC---HHHHHHHHHHHHhccccC-cccHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999987 66 999999999999999997 6677887 3332
Q ss_pred -CCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHH
Q 017406 171 -PKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATA 249 (372)
Q Consensus 171 -~~~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaA 249 (372)
..+.+++++|.+||+.||++|+|++.++||+.||..|++.++.. .+....|.+++..++.+..+++|+||.||+|
T Consensus 104 ~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~----~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaA 179 (235)
T 1zp2_A 104 SLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN----QKQLEFAWSIVNDSYASSLCLMAHPHQLAYA 179 (235)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSC----HHHHHHHHHHHHHHTTTTGGGTSCHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHcCCchhccCHHHHHHH
Confidence 23567899999999999999999999999999999999977543 3567888899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCcccchhhhcCCChHHHHHHHHHHHHHHHhcCC
Q 017406 250 TMLHTIQEVEPCNPVEHQNLLMGVLNISQQDKLKECYLLILELSRGNG 297 (372)
Q Consensus 250 al~~a~~~l~~~~~~~~~~~L~~~~~i~~~e~v~~C~~~i~el~~~~~ 297 (372)
||++|....+... ..|...+. |++. ++|.+|++.|.+++....
T Consensus 180 ai~lA~~~~~~~~-~~~~~~~~---~~~~-~~i~~~~~~i~~ly~~~~ 222 (235)
T 1zp2_A 180 ALLISCCNDENTI-PKLLDLIK---STDA-FKVILCVQRIISIYYFED 222 (235)
T ss_dssp HHHHHHTSCTTHH-HHHHHHCC---HHHH-HHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhcCCCC-CCCcchhh---cCCH-HHHHHHHHHHHHHHhhCC
Confidence 9999998765221 11222222 9999 999999999999998754
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.97 E-value=8.3e-32 Score=265.11 Aligned_cols=198 Identities=18% Similarity=0.208 Sum_probs=164.2
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhccccCCccccce-eec
Q 017406 91 ILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVK 169 (372)
Q Consensus 91 i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v~ 169 (372)
....+|..+++||.+|+.+|+++++|+++|++|||||++...+.+.+ +|++|+||||||+|+||+ +|.+.++ .+.
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~---~qlva~acLfLA~K~EE~-p~~l~d~v~v~ 108 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFP---GNSVAPAALFLAAKVEEQ-PKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccccc---HHHHHHHHHHHHHhhccC-CCCHHHHHHHH
Confidence 44689999999999999999999999999999999999999998777 999999999999999999 7778887 221
Q ss_pred --------------CCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc-
Q 017406 170 --------------DPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIA- 234 (372)
Q Consensus 170 --------------~~~~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~- 234 (372)
+..|.+++++|++||+.||++|+|+++++||+.||..|++.++.. .++...|.+++..++.
T Consensus 109 ~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~----~~l~~~A~~ll~~sl~~ 184 (358)
T 2pk2_A 109 HTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRAS----KDLAQTSYFMATNSLHL 184 (358)
T ss_dssp HHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCC----HHHHHHHHHHHHHHTTT
T ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhc
Confidence 234545589999999999999999999999999999999998753 3566778788877775
Q ss_pred chhccCCCHHHHHHHHHHHHHHhcCCCCCc-Ccccchhhh--cCCChHHHHHHHHHHHHHHHhcCC
Q 017406 235 DSRFMCYLPSTLATATMLHTIQEVEPCNPV-EHQNLLMGV--LNISQQDKLKECYLLILELSRGNG 297 (372)
Q Consensus 235 d~~fl~~~PS~IAaAal~~a~~~l~~~~~~-~~~~~L~~~--~~i~~~e~v~~C~~~i~el~~~~~ 297 (372)
...++.|+||.||+|||++|...++...+. .....|+.. .+++. ++|.+|++.|.+++....
T Consensus 185 t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~-~~l~~i~~~il~~y~~~~ 249 (358)
T 2pk2_A 185 TTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTL-ELLDELTHEFLQILEKTP 249 (358)
T ss_dssp SCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCH-HHHHHHHHHHHHHTTTCT
T ss_pred CcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCH-HHHHHHHHHHHHHHHhCc
Confidence 444899999999999999999988732111 011223333 37899 999999999999987643
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.96 E-value=2.9e-29 Score=243.85 Aligned_cols=197 Identities=17% Similarity=0.178 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhccccCCccccce-ee
Q 017406 92 LILARKEVVEWVLRVKAHFG--FTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QV 168 (372)
Q Consensus 92 ~~~~R~~~v~Wi~~v~~~~~--l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v 168 (372)
...+|...++||.+|+.+|+ +++.|+++|++|||||++...+.+.+ +|++|+||||||||+||+ ++.+.++ .+
T Consensus 53 E~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~-~~~l~d~v~~ 128 (323)
T 1jkw_A 53 EMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYH---PRIIMLTCAFLACKVDEF-NVSSPQFVGN 128 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcC---HHHHHHHHHHHHHhhhcC-CCCHHHHHHH
Confidence 35789999999999999999 99999999999999999999998777 999999999999999999 5677787 22
Q ss_pred cCCC---ccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhC-----CCCcccHHHHHHHHHHHHHHhcchhccC
Q 017406 169 KDPK---YVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLG-----LKTHLHWEFLYRCEHLLLSVIADSRFMC 240 (372)
Q Consensus 169 ~~~~---~~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~-----~~~~~~~~~l~~~~~ll~~~l~d~~fl~ 240 (372)
.... ..+++++|++||+.||++|+|++.++||+.||..|+..+. ... ...+...|..++..++.+..++.
T Consensus 129 ~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~--~~~l~~~A~~~l~~sl~t~~~l~ 206 (323)
T 1jkw_A 129 LRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILEN--PEILRKTADDFLNRIALTDAYLL 206 (323)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCC--HHHHHHHHHHHHHHHTTSTHHHH
T ss_pred hccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHhccHHHc
Confidence 2221 2356899999999999999999999999999999997762 222 12455778888888888999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcCcccchhhh--cCCChHHHHHHHHHHHHHHHhcC
Q 017406 241 YLPSTLATATMLHTIQEVEPCNPVEHQNLLMGV--LNISQQDKLKECYLLILELSRGN 296 (372)
Q Consensus 241 ~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~--~~i~~~e~v~~C~~~i~el~~~~ 296 (372)
|+||.||+|||++|...++... ..|...+... .+++. ++|.+|++.|.+++...
T Consensus 207 ~~Ps~IAaAai~lA~~~~~~~~-~~w~~~l~~~~~~~~~~-~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 207 YTPSQIALTAILSSASRAGITM-ESYLSESLMLKENRTCL-SQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCC-TTHHHHHTTSCSSSCCT-HHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCCCh-HHHHHHHhccccccccH-HHHHHHHHHHHHHHHcc
Confidence 9999999999999999887542 3466655443 67899 99999999999999764
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.93 E-value=1.2e-24 Score=198.28 Aligned_cols=185 Identities=16% Similarity=0.205 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhccccCCccccce-eecCCCc
Q 017406 95 ARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKY 173 (372)
Q Consensus 95 ~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v~~~~~ 173 (372)
....+.++|.+++..+++++.|..+|+.||+||+....+...+ .+++|+||||||||+||+ ++.+.|+ .+. .
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~---~~~v~aaclylAcK~ee~-p~~l~di~~~~--~- 76 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRA---NDAIASACLYIACRQEGV-PRTFKEICAVS--R- 76 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHTS--S-
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCC---HHHHHHHHHHHHHHhcCC-CCCHHHHHHHH--C-
Confidence 4678899999999999999999999999999999999888777 999999999999999998 6778887 332 2
Q ss_pred cccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHH
Q 017406 174 VFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLH 253 (372)
Q Consensus 174 ~ft~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~ 253 (372)
++.++|.++|+.|++.|+|++.+++|+.|+..|...++.++ +..+.+.+++..++.+.-+.+++|+.||+|||++
T Consensus 77 -~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~----~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiyl 151 (207)
T 1c9b_A 77 -ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK----QVQMAATHIARKAVELDLVPGRSPISVAAAAIYM 151 (207)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHH
Confidence 57999999999999999999999999999999999998753 4556777888877777778999999999999999
Q ss_pred HHHhcCCCCCcCcccchhhhcCCChHHHHHHHHHHHHHHHhc
Q 017406 254 TIQEVEPCNPVEHQNLLMGVLNISQQDKLKECYLLILELSRG 295 (372)
Q Consensus 254 a~~~l~~~~~~~~~~~L~~~~~i~~~e~v~~C~~~i~el~~~ 295 (372)
|....+.. .+...+..++|+++ ..|.+|++.|.+....
T Consensus 152 A~~~~~~~---~~~~~i~~~~~v~~-~tI~~~~~~l~~~l~~ 189 (207)
T 1c9b_A 152 ASQASAEK---RTQKEIGDIAGVAD-VTIRQSYRLIYPRAPD 189 (207)
T ss_dssp HHHTSSSC---CCHHHHHHHHTCCH-HHHHHHHHHHGGGHHH
T ss_pred HHHHHCCC---CCHHHHHHHhCCCH-HHHHHHHHHHHHHHHH
Confidence 99987632 35678889999999 9999999999876654
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.86 E-value=1.4e-20 Score=170.36 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhccccCCccccce-eecCCC
Q 017406 94 LARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPK 172 (372)
Q Consensus 94 ~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v~~~~ 172 (372)
.....+.++|.+++..+++++.+...|..|++||+....+...+ .+.+|++||++|||.|+. +..+.|+ .+. +
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~---~~~vaaAclylAcr~~~~-p~~l~di~~~~--~ 80 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRS---IESVMAACVYAACRLLKV-PRTLDEIADIA--R 80 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCC---HHHHHHHHHHHHHHHHTC-CCCHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCC---HHHHHHHHHHHHHHHcCC-CCCHHHHHHHH--C
Confidence 34568999999999999999999999999999999998777666 999999999999999996 6777887 332 2
Q ss_pred ccccHHHHHHHHHHHHHHcCccccC--CChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHH
Q 017406 173 YVFEAKTIQRMELLVLSTLQWRMNP--VTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250 (372)
Q Consensus 173 ~~ft~~~I~~mE~~IL~~L~w~l~~--~Tp~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAa 250 (372)
.+.++|.++++.|++.|+|++.+ ++|..|+..|...++.++ +....+.+++..+..+.-+.+++|+.|||||
T Consensus 81 --v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~----~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAa 154 (200)
T 1ais_B 81 --VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE----KVRRRAIEILDEAYKRGLTSGKSPAGLVAAA 154 (200)
T ss_dssp --SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH----HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHcCcccCCCHHHHHHHH
Confidence 47999999999999999999999 999999999999998764 4567788888888888888999999999999
Q ss_pred HHHHHHhcCCCCCcCcccchhhhcCCChHHHHHHHHHHHHHHHh
Q 017406 251 MLHTIQEVEPCNPVEHQNLLMGVLNISQQDKLKECYLLILELSR 294 (372)
Q Consensus 251 l~~a~~~l~~~~~~~~~~~L~~~~~i~~~e~v~~C~~~i~el~~ 294 (372)
|++|....+.. .+...+..+.|+++ ..|..|++.|.+.+.
T Consensus 155 ly~A~~~~~~~---~t~~ei~~~~~vs~-~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 155 LYIASLLEGEK---RTQREVAEVARVTE-VTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHTTCC---CCHHHHHHHHTCCH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC---CCHHHHHHHhCCCH-HHHHHHHHHHHHHcC
Confidence 99999987632 36688899999999 999999999998775
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.5e-17 Score=161.19 Aligned_cols=183 Identities=10% Similarity=0.097 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhccccCCccccce-eecCCCcc
Q 017406 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYV 174 (372)
Q Consensus 96 R~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v~~~~~~ 174 (372)
...+...|..++..++++..+.-.|..||.|++....+...+ .+.+++||||||||.|++ +..+.|+ .+ ..
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~---~~~vaaAclyiAcR~e~~-prtl~ei~~~--~~-- 197 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEV-ARTFKEIQSL--IH-- 197 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCC---SHHHHTTTTTTTSBTTBS-SCCHHHHHHS--SS--
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCc---HHHHHHHHHHHHHHHcCC-CccHHHHHHH--HC--
Confidence 457789999999999999999999999999999998887666 999999999999999998 6777887 33 22
Q ss_pred ccHHHHHHHHHHHHHHcC------------ccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCC
Q 017406 175 FEAKTIQRMELLVLSTLQ------------WRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYL 242 (372)
Q Consensus 175 ft~~~I~~mE~~IL~~L~------------w~l~~~Tp~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~ 242 (372)
.+.++|.++++.|++.|+ +.+.+++|..|+..|...+++.. ++...|.+++..+..+.-+.+++
T Consensus 198 v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~----~v~~~A~~i~~~~~~~~l~~Gr~ 273 (345)
T 3k7a_M 198 VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM----QVTTSAEYTAKKCKEIKEIAGKS 273 (345)
T ss_dssp CCSHHHHHHHHHHHHHHTCC------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhchhcCCC
Confidence 468999999999999999 99999999999999999998764 34566777777777777788999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCChHHHHHHHHHHHHHHHh
Q 017406 243 PSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQQDKLKECYLLILELSR 294 (372)
Q Consensus 243 PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~e~v~~C~~~i~el~~ 294 (372)
|+.|||||||+|....+.. .+...+..++|+++ ..|..+++.|.+...
T Consensus 274 P~~IAaAaIylAa~~~~~~---~t~~eIa~~~~Vse-~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 274 PITIAVVSIYLNILLFQIP---ITAAKVGQTLQVTE-GTIKSGYKILYEHRD 321 (345)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCC---CCHHHHHHHHCCCH-HHHHHHHHHHHHHHH
Confidence 9999999999999877632 25678889999999 999999999988663
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.28 E-value=4.6e-12 Score=123.78 Aligned_cols=183 Identities=10% Similarity=0.105 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhccccCCccccce-eecCCCccc
Q 017406 97 KEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVF 175 (372)
Q Consensus 97 ~~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v~~~~~~f 175 (372)
..+...|.+++..++++..+.-.|..++.+++....+...+ ...++++|||+|||.+++ +..+.++ .+.. .
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs---~e~vaAAclYiACR~~~~-prtl~eI~~~~~----v 198 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEV-ARTFKEIQSLIH----V 198 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCC---HHHHHHHHHHHHHHHTCC-BCCHHHHHHHHT----C
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCC---HHHHHHHHHHHHHHhcCC-CccHHHHHHHhC----C
Confidence 45677889999999999999999999999999987776555 899999999999999987 5566776 2221 2
Q ss_pred cHHHHHHHHHHHHHHcCcc------------ccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCCH
Q 017406 176 EAKTIQRMELLVLSTLQWR------------MNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLP 243 (372)
Q Consensus 176 t~~~I~~mE~~IL~~L~w~------------l~~~Tp~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~P 243 (372)
+.++|.+..+.|.+.|+.. +.+++|.+|+..|...|++... +.+.|..++..+..+.-..+.+|
T Consensus 199 ~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~----v~~~A~~i~~~~~~~~i~~GR~P 274 (345)
T 4bbr_M 199 KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ----VTTSAEYTAKKCKEIKEIAGKSP 274 (345)
T ss_dssp CTTHHHHHHHHHHHCC----------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH----HHHHHHHHHHHHHhcccccCCCh
Confidence 5889999999999999974 7788999999999999988643 44556666665555555679999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCChHHHHHHHHHHHHHHHhc
Q 017406 244 STLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQQDKLKECYLLILELSRG 295 (372)
Q Consensus 244 S~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~e~v~~C~~~i~el~~~ 295 (372)
+.|||||||+|....+... -...+..+.|+++ ..|+..|+.|.+....
T Consensus 275 ~~IAAAaIylAa~l~g~~~---t~~eIa~v~~Vse-~TIr~rykel~~~~~~ 322 (345)
T 4bbr_M 275 ITIAVVSIYLNILLFQIPI---TAAKVGQTLQVTE-GTIKSGYKILYEHRDK 322 (345)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCC---CHHHHHHHHCCCH-HHHHHHHHHHHHHHHh
Confidence 9999999999998766332 2466788899999 9999999888775543
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.12 E-value=9.5e-06 Score=76.61 Aligned_cols=109 Identities=9% Similarity=0.070 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhccccCCccccce-eecCCCcccc
Q 017406 98 EVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFE 176 (372)
Q Consensus 98 ~~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl-~v~~~~~~ft 176 (372)
.+-+|+..+..+-+++..++..|+.|+||+.....--.-.++..+-+-++||.+|+|+-+-....-... .+ + .++
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV--g--Gis 151 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV--G--GVR 151 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH--H--TSC
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc--c--CcC
Confidence 356789999999999999999999999999885432112245588889999999999955433333333 33 2 357
Q ss_pred HHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHh
Q 017406 177 AKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRL 211 (372)
Q Consensus 177 ~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~l 211 (372)
.+++.+||+..|..|+|++.+. +-.|..+++...
T Consensus 152 l~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~ 185 (293)
T 2pmi_B 152 CHELNILENDFLKRVNYRIIPR-DHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHh
Confidence 9999999999999999999655 666766665543
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.30 E-value=0.093 Score=46.19 Aligned_cols=88 Identities=10% Similarity=0.107 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCCh
Q 017406 199 TPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQ 278 (372)
Q Consensus 199 Tp~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~ 278 (372)
..+.++..+...+++++ .+...+..+.........+-+.+|-.+|+||+++|.+..+.. .-...+..+++++.
T Consensus 11 ~a~~~I~~~~~~L~L~~----~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p---~~l~di~~~~~v~~ 83 (200)
T 1ais_B 11 FALSELDRITAQLKLPR----HVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVP---RTLDEIADIARVDK 83 (200)
T ss_dssp HHHHHHHHHHHHHTCCH----HHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCC---CCHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCC---CCHHHHHHHHCCCH
Confidence 45778899999998863 566777777776665555678999999999999999987622 12356677889999
Q ss_pred HHHHHHHHHHHHHHHh
Q 017406 279 QDKLKECYLLILELSR 294 (372)
Q Consensus 279 ~e~v~~C~~~i~el~~ 294 (372)
.+|..+++.|.+.+.
T Consensus 84 -~~i~~~~~~l~~~L~ 98 (200)
T 1ais_B 84 -KEIGRSYRFIARNLN 98 (200)
T ss_dssp -HHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhc
Confidence 999999999988664
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.62 E-value=0.18 Score=44.62 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCChH
Q 017406 200 PISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQQ 279 (372)
Q Consensus 200 p~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~ 279 (372)
.+.++..+...+++++ ..+..+..+....+....+.+++|-.||+||+++|.+..+.. .-...+..+++++.
T Consensus 8 a~~~I~~~~~~L~L~~----~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p---~~l~di~~~~~~~~- 79 (207)
T 1c9b_A 8 AFKEITTMADRINLPR----NIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP---RTFKEICAVSRISK- 79 (207)
T ss_dssp HHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCC---CCHHHHHHTSSSCH-
T ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCC---CCHHHHHHHHCCCH-
Confidence 4677888888888764 456666666666666666789999999999999999976532 12356677889999
Q ss_pred HHHHHHHHHHHHHHh
Q 017406 280 DKLKECYLLILELSR 294 (372)
Q Consensus 280 e~v~~C~~~i~el~~ 294 (372)
.+|.+++..|.+.+.
T Consensus 80 ~~i~~~~~~ll~~L~ 94 (207)
T 1c9b_A 80 KEIGRCFKLILKALE 94 (207)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999999988764
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=89.48 E-value=1.2 Score=42.84 Aligned_cols=89 Identities=6% Similarity=0.046 Sum_probs=64.5
Q ss_pred CChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCC
Q 017406 198 VTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNIS 277 (372)
Q Consensus 198 ~Tp~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~ 277 (372)
...+..|..+...+++++ .+...+..+...+...-.+-+.+...|||||+|+|.+..+.. .-...+..+++++
T Consensus 127 ~~a~~~I~~~~~~L~Lp~----~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~p---rtl~eI~~~~~v~ 199 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPK----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVA---RTFKEIQSLIHVK 199 (345)
T ss_dssp THHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCB---CCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCC---ccHHHHHHHhCCC
Confidence 345566777788888764 455666666655554434557888999999999999986522 2335677788999
Q ss_pred hHHHHHHHHHHHHHHHh
Q 017406 278 QQDKLKECYLLILELSR 294 (372)
Q Consensus 278 ~~e~v~~C~~~i~el~~ 294 (372)
+ .+|..+++.|.+.+.
T Consensus 200 ~-keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 200 T-KEFGKTLNIMKNILR 215 (345)
T ss_dssp T-THHHHHHHHHHHCC-
T ss_pred H-HHHHHHHHHHHHHhC
Confidence 9 999999999988665
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=86.22 E-value=3.4 Score=36.97 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccC-CCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhc-----
Q 017406 201 ISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMC-YLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL----- 274 (372)
Q Consensus 201 ~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~-~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~----- 274 (372)
.+++..+...++++. +.+..|..++...+....+.+ +.|-.||+|||++|.+.-+.... ...+..++
T Consensus 32 ~~~i~~v~~~l~L~~----~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~---l~d~~~~~~~~~~ 104 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQ----RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVH---IRTICNEANDLWS 104 (235)
T ss_dssp HHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCccc---HHHHHHHHHHHcc
Confidence 456666666676653 455666666666666667788 99999999999999997652211 12233322
Q ss_pred ---CCChHHHHHHHHHHHHHHHh
Q 017406 275 ---NISQQDKLKECYLLILELSR 294 (372)
Q Consensus 275 ---~i~~~e~v~~C~~~i~el~~ 294 (372)
.++. ++|.++-..|.+.+.
T Consensus 105 ~~~~~~~-~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 105 LKVKLSR-SNISEIEFEIISVLD 126 (235)
T ss_dssp CSSCCCH-HHHHHHHHHHHHHTT
T ss_pred chhhccH-HHHHHHHHHHHHHCC
Confidence 5788 999999999888764
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=84.21 E-value=0.62 Score=44.75 Aligned_cols=87 Identities=6% Similarity=0.049 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCChH
Q 017406 200 PISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQQ 279 (372)
Q Consensus 200 p~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~ 279 (372)
.+.+|..+...++++. .++..+..+...+...-.+-+.+.-.|||||||+|.+..+. +.-...+..+++++.
T Consensus 129 a~~~I~~~~~~L~Lp~----~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~---prtl~ei~~~~~v~~- 200 (345)
T 3k7a_M 129 AFAKITMLCDAAELPK----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV---ARTFKEIQSLIHVKT- 200 (345)
T ss_dssp HHHHHHHHHHHTTCCH----HHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS---SCCHHHHHHSSSCCS-
T ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC---CccHHHHHHHHCCCH-
Confidence 4467777778887664 45566666666655444566788999999999999986552 122356677889999
Q ss_pred HHHHHHHHHHHHHHh
Q 017406 280 DKLKECYLLILELSR 294 (372)
Q Consensus 280 e~v~~C~~~i~el~~ 294 (372)
.+|.+|++.|.+.+.
T Consensus 201 keIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 201 KEFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998776
No 25
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=81.81 E-value=6.6 Score=35.45 Aligned_cols=87 Identities=9% Similarity=0.093 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCCH----HHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhccccCCccccc------e-eec
Q 017406 101 EWVLRVKAHFGFTA----LTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLD------L-QVK 169 (372)
Q Consensus 101 ~Wi~~v~~~~~l~~----~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~d------l-~v~ 169 (372)
+++......++.+. .+..+|..+++.-+....+-... ...+|+||+++|+++-....|.... . ..-
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWE---PEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSC---HHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccC---hHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 46667777777776 56778888888776655444455 7789999999999986543332111 0 000
Q ss_pred CCCccccHHHHHHHHHHHHHHcC
Q 017406 170 DPKYVFEAKTIQRMELLVLSTLQ 192 (372)
Q Consensus 170 ~~~~~ft~~~I~~mE~~IL~~L~ 192 (372)
.. .++.++|...-..|++...
T Consensus 230 ~~--~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 VQ--DVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SS--SCCHHHHHHHHHHHHTTTS
T ss_pred cc--CCCHHHHHHHHHHHHHHHh
Confidence 11 3478999998888887654
No 26
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=80.32 E-value=24 Score=31.26 Aligned_cols=148 Identities=15% Similarity=0.191 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCc---ccCCCCchhHHHHHHHHHhhhhccccCCccccceeecCCCccc
Q 017406 99 VVEWVLRVKAHFGFTALTAILAVNYFDRFILSHS---FQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVF 175 (372)
Q Consensus 99 ~v~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~---v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl~v~~~~~~f 175 (372)
+.+-|..++.+-+++..++--||-+--.|..... ..-++ -|-+|++|+.||+----. +..+.++.+-+....
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~---q~dVAAAc~miAae~~~~-PiplaE~r~lD~sL~- 89 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVER---QPDVAAACLMIAAEEAQQ-PLPLAEVRCLDSSLG- 89 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHCTTCC-
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccc---cHHHHHHHHHHHHHHcCC-CccHHHHHHHhhhhh-
Confidence 4556688999999999999999999998886643 22335 889999999999964333 334556633333221
Q ss_pred cHHHHHHHHHHHHHHcCc-----cccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHH
Q 017406 176 EAKTIQRMELLVLSTLQW-----RMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250 (372)
Q Consensus 176 t~~~I~~mE~~IL~~L~w-----~l~~~Tp~~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAa 250 (372)
.-++.+. .|+..|+- +|...-.-..|.+|+.++++.-. -+.-.|.+++..+-..-.+..+.--.--.-|
T Consensus 90 -Dvelrr~--Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s---~Y~p~C~rL~~ai~~ve~LA~~~~~drii~A 163 (260)
T 3h4c_A 90 -DVELRRA--DIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVS---LYLPHCKRLLTALGRVEALAGLTVADRVTTA 163 (260)
T ss_dssp -CHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHHHHHHHTCGGGTTCCHHHHHHHH
T ss_pred -HHHHHHH--HHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchh---hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 2234443 35666654 33333344566677777776421 2334566666555444445666655555566
Q ss_pred HHHHHHh
Q 017406 251 MLHTIQE 257 (372)
Q Consensus 251 l~~a~~~ 257 (372)
+++|+..
T Consensus 164 lLLArT~ 170 (260)
T 3h4c_A 164 LLLARTA 170 (260)
T ss_dssp HHHHHHS
T ss_pred HHHHhcc
Confidence 6777653
No 27
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=79.92 E-value=9.4 Score=34.42 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhc-cCcccCCCCchhHHHHHHHHHhhhhccccCCccccc---e-eecCCCccc
Q 017406 101 EWVLRVKAHFGFTALTAILAVNYFDRFIL-SHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLD---L-QVKDPKYVF 175 (372)
Q Consensus 101 ~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs-~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~d---l-~v~~~~~~f 175 (372)
.++......++.+.++..+|..++..-+. ..-.-... ...+|+||+++|+++-....|...+ . ..-.. .+
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~--~~ 222 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYK---PTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDP--TV 222 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSC---HHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCS--SC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCC---HHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCC--CC
Confidence 35556667778888888888888755442 22123334 6789999999999996544443211 1 00111 24
Q ss_pred cHHHHHHHHHHHHHHc
Q 017406 176 EAKTIQRMELLVLSTL 191 (372)
Q Consensus 176 t~~~I~~mE~~IL~~L 191 (372)
+.++|...-..|+..+
T Consensus 223 ~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 223 TLELLDELTHEFLQIL 238 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7888888888888754
No 28
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=78.01 E-value=4 Score=37.87 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhccccCCccccceeecCCCccccHHHH
Q 017406 101 EWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTI 180 (372)
Q Consensus 101 ~Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl~v~~~~~~ft~~~I 180 (372)
+++......++.+..+..+|..++..-+....+-... -..+|++|+++|+++.....+..-. . +.++.++|
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~---Ps~IAaAaiylA~~~~~~~~~~W~~----~--~~~~~~~l 229 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYP---PFMIALACLHVACVVQQKDARQWFA----E--LSVDMEKI 229 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSC---HHHHHHHHHHHHHHHTTCCCHHHHH----T--SCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccC---HHHHHHHHHHHHHHHcCCChhhHHH----H--HCCCHHHH
Confidence 4566666777788888999999988766544333344 6789999999999985542221111 1 12467777
Q ss_pred HHHHHHHHHH
Q 017406 181 QRMELLVLST 190 (372)
Q Consensus 181 ~~mE~~IL~~ 190 (372)
...-..|+..
T Consensus 230 ~~~~~~il~l 239 (285)
T 3rgf_B 230 LEIIRVILKL 239 (285)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666654
No 29
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=74.87 E-value=7.7 Score=37.27 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccCc-ccCCCCchhHHHHHHHHHhhhhccccCCccccc---e-eecCCCcccc
Q 017406 102 WVLRVKAHFGFTALTAILAVNYFDRFILSHS-FQKDKPWMGQLVAVACLSLAAKVDETQVPLLLD---L-QVKDPKYVFE 176 (372)
Q Consensus 102 Wi~~v~~~~~l~~~T~~lAv~ylDRfLs~~~-v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~d---l-~v~~~~~~ft 176 (372)
||......++.+.++..+|.+++..-+.... +-... ...||+||+++|+++-...+|...+ . .+-+. .++
T Consensus 156 fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~---Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~--~vt 230 (358)
T 2pk2_A 156 HVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYT---PPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDA--TVT 230 (358)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSC---HHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCS--SCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccC---HHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhc--cCC
Confidence 5556666778888888889888865542222 23334 6789999999999996654443211 1 01011 236
Q ss_pred HHHHHHHHHHHHHHc
Q 017406 177 AKTIQRMELLVLSTL 191 (372)
Q Consensus 177 ~~~I~~mE~~IL~~L 191 (372)
.++|...-..|+..+
T Consensus 231 ~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 231 LELLDELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888877777654
No 30
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=72.95 E-value=21 Score=33.59 Aligned_cols=86 Identities=12% Similarity=0.075 Sum_probs=54.6
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCC-----
Q 017406 203 FFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNIS----- 277 (372)
Q Consensus 203 Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~----- 277 (372)
+|..+...++. .+....+..|..++...+....+..+.|-.||+|||++|.+.-+.... ...+...++.+
T Consensus 63 ~I~ev~~~l~~--~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~---l~d~v~~~~~~p~~~~ 137 (323)
T 1jkw_A 63 RLLEFCSVFKP--AMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVS---SPQFVGNLRESPLGQE 137 (323)
T ss_dssp HHHHHHHHCTT--TCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCC---HHHHGGGSSSCHHHHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCC---HHHHHHHhccChhhhH
Confidence 34444455541 122356666777777777777889999999999999999997653211 12333333333
Q ss_pred --hHHHHHHHHHHHHHHHh
Q 017406 278 --QQDKLKECYLLILELSR 294 (372)
Q Consensus 278 --~~e~v~~C~~~i~el~~ 294 (372)
. ++|..+-..|.+.+.
T Consensus 138 ~~~-~~Il~~E~~iL~~L~ 155 (323)
T 1jkw_A 138 KAL-EQILEYELLLIQQLN 155 (323)
T ss_dssp HHH-HHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHCC
Confidence 5 677777777766543
No 31
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=68.96 E-value=21 Score=32.44 Aligned_cols=86 Identities=10% Similarity=0.126 Sum_probs=56.2
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhc--CCChH
Q 017406 202 SFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQQ 279 (372)
Q Consensus 202 ~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~ 279 (372)
+|+......++.. .+.+..+..+++..+....+....+-.+|+||+++|.+.-+...+ -...+..++ .+++
T Consensus 43 ~wl~~v~~~~~l~----~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p--~~~d~~~~~~~~~~~- 115 (269)
T 2b9r_A 43 DWLVQVQMKFRLL----QETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPP--EIGDFAFVTDNTYTK- 115 (269)
T ss_dssp HHHHHHHHHTTCC----HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCC--CHHHHHHHTCSSSCH-
T ss_pred HHHHHHHHHhCCC----HHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCc--cHHHHHHHhcCCCCH-
Confidence 3444444445443 245555666666666666677788889999999999987653211 123444455 4788
Q ss_pred HHHHHHHHHHHHHHh
Q 017406 280 DKLKECYLLILELSR 294 (372)
Q Consensus 280 e~v~~C~~~i~el~~ 294 (372)
++|.++-..|.+.+.
T Consensus 116 ~eI~~mE~~IL~~L~ 130 (269)
T 2b9r_A 116 HQIRQMEMKILRALN 130 (269)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999888887653
No 32
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=67.03 E-value=32 Score=31.21 Aligned_cols=69 Identities=13% Similarity=0.014 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhc--CCChHHHHHHHHHHHHHHHh
Q 017406 223 YRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQQDKLKECYLLILELSR 294 (372)
Q Consensus 223 ~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~e~v~~C~~~i~el~~ 294 (372)
..+..+++..+....+....+-.+|+||+++|.+.-+.... -...+..++ .+++ ++|.++-..|.+.+.
T Consensus 79 ~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~--~~~~~~~~~~~~~~~-~eI~~mE~~IL~~L~ 149 (271)
T 2w96_A 79 PLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPL--TAEKLCIYTDNSIRP-EELLQMELLLVNKLK 149 (271)
T ss_dssp HHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCC--CHHHHHHHTTTSSCH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHhcCCCCH-HHHHHHHHHHHHHCC
Confidence 34444444444444556778889999999999997653211 122333444 4889 999999988888664
No 33
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=66.98 E-value=31 Score=30.94 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=55.2
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhc--CCChH
Q 017406 202 SFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQQ 279 (372)
Q Consensus 202 ~Fl~~~l~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~ 279 (372)
+|+......++... +.+..+..+++..+....+.....-.+|+||+++|.+.-+...+ -...+..++ .+++
T Consensus 57 dwl~~v~~~~~l~~----etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p--~~~d~~~~~~~~~~~- 129 (254)
T 2f2c_A 57 TWMHLLCESFELDK----SVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPM--TVSKLTYLSCDCFTN- 129 (254)
T ss_dssp HHHHHHHHHTTCCT----THHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCC--CHHHHSTTC---CCH-
T ss_pred HHHHHHHHHHCCCc----hHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCC--CHHHHHHHhCCCCCH-
Confidence 34444444455443 34455556666666666677888899999999999997653211 122333443 4788
Q ss_pred HHHHHHHHHHHHHHh
Q 017406 280 DKLKECYLLILELSR 294 (372)
Q Consensus 280 e~v~~C~~~i~el~~ 294 (372)
++|.++-..|.+.+.
T Consensus 130 ~~i~~mE~~IL~~L~ 144 (254)
T 2f2c_A 130 LELINQEKDILEALK 144 (254)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999888888765
No 34
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=62.74 E-value=21 Score=32.20 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhc--CCChHHHHHHHHHHHHHHHh
Q 017406 223 YRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQQDKLKECYLLILELSR 294 (372)
Q Consensus 223 ~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~e~v~~C~~~i~el~~ 294 (372)
..+..+++..+.-..+.....-.+|+||+++|.+..+...+ -...+..++ .+++ ++|.++-..|.+.+.
T Consensus 61 ~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~--~~~d~~~i~~~~~~~-~~i~~mE~~iL~~L~ 131 (260)
T 2cch_B 61 HLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPP--EVAEFVYITDDTYTK-KQVLRMEHLVLKVLT 131 (260)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCC--CHHHHHHHTTSSSCH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCC--CHHHHHHHHcCCcCH-HHHHHHHHHHHHHcC
Confidence 33334444433333344455677899999999987653211 123344444 4888 999999888887664
No 35
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=60.06 E-value=26 Score=31.51 Aligned_cols=72 Identities=13% Similarity=-0.037 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhc--CCChHHHHHHHHHHHHHHHh
Q 017406 220 EFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQQDKLKECYLLILELSR 294 (372)
Q Consensus 220 ~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~e~v~~C~~~i~el~~ 294 (372)
+.+..+..+++..+....+.....-.+|+||+++|.+.-+...+ -...+..++ .+++ ++|.++-..|.+.+.
T Consensus 70 etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p--~~~d~~~~~~~~~~~-~~i~~mE~~iL~~L~ 143 (257)
T 1g3n_C 70 NVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPI--STSSLCYAAADSFSR-QELIDQEKELLEKLA 143 (257)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCC--CHHHHHHHTTTCSCH-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCC--CHHHHHHHHCCCCCH-HHHHHHHHHHHHHCC
Confidence 44455555555555544555666778999999999986543211 123344444 4889 999999888888664
No 36
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=59.90 E-value=42 Score=31.15 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhc--CCChHHHHHHHHHHHHHHHh
Q 017406 224 RCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQQDKLKECYLLILELSR 294 (372)
Q Consensus 224 ~~~~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~e~v~~C~~~i~el~~ 294 (372)
.+..+++..+....+....+-.+|+||+++|.+.-+... . -...+..++ .+++ ++|.++-..|.+.+.
T Consensus 94 lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p-~-~~~~l~~~~~~~~~~-~~i~~mE~~IL~~L~ 163 (306)
T 3g33_B 94 LAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTP-L-TIEKLCIYTDHAVSP-RQLRDWEVLVLGKLK 163 (306)
T ss_dssp HHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSC-C-CTTHHHHHTTTSSCH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCC-C-CHHHHHHHhccCccH-HHHHHHHHHHHHHcC
Confidence 333444444444445677788899999999998654321 1 122334444 4788 899888888877653
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=49.29 E-value=64 Score=29.43 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhcc-hhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhc--CCChHHHHHHHHHHHHHHHh
Q 017406 220 EFLYRCEHLLLSVIAD-SRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQQDKLKECYLLILELSR 294 (372)
Q Consensus 220 ~~l~~~~~ll~~~l~d-~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~e~v~~C~~~i~el~~ 294 (372)
+.+..+..+++..+.- ........-.+|+||+++|.+.-+...+ -...+..++ .+++ ++|.++-..|.+.+.
T Consensus 69 ~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p--~l~~~~~i~~~~~~~-~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 69 ETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPP--KLHQFAYVTDGACSG-DEILTMELMIMKALK 143 (283)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCC--CHHHHHHTTTTSSCH-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCC--cHHHHHHHHcCCCCH-HHHHHHHHHHHHHcC
Confidence 3344444444444433 2345677888999999999987653211 123344444 5889 999999988888764
No 38
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=42.51 E-value=53 Score=25.36 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=49.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccCc------ccCCCCchhHHHHHHHHHhhhhccccCCccccceeecCCCcccc
Q 017406 103 VLRVKAHFGFTALTAILAVNYFDRFILSHS------FQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFE 176 (372)
Q Consensus 103 i~~v~~~~~l~~~T~~lAv~ylDRfLs~~~------v~~~~~~~lqLvavaCL~LAaK~eE~~vP~l~dl~v~~~~~~ft 176 (372)
|.++|..||+.. ..-.|-.+|++|=.... +.-+ -...+++|+|.|||.--..|+..+=+ ..++- .
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s----~P~f~aaA~~~acr~~K~kVdK~KL~--~~s~l--k 76 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLS----RPLFTSAALLSACKILKLKVDKNKMV--ATSGV--K 76 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTT----SHHHHHHHHHHHHHHTTCCCCHHHHH--HTTCB--C
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhcccccc----ccHHHHHHHHHHHHHHccCCCHHHHH--HHHCC--C
Confidence 467889999865 66778899999986542 1222 34578899999999988766553322 12222 3
Q ss_pred HHHHHHHHHHH
Q 017406 177 AKTIQRMELLV 187 (372)
Q Consensus 177 ~~~I~~mE~~I 187 (372)
+.++.+.+..+
T Consensus 77 ~~~f~~l~~~~ 87 (95)
T 3m03_A 77 KAIFDRLCKQL 87 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55655555443
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=32.56 E-value=1.6e+02 Score=26.36 Aligned_cols=65 Identities=15% Similarity=0.045 Sum_probs=39.2
Q ss_pred HHHHHHhcchhccCCCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhc--CCChHHHHHHHHHHHHHHHh
Q 017406 227 HLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQQDKLKECYLLILELSR 294 (372)
Q Consensus 227 ~ll~~~l~d~~fl~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~e~v~~C~~~i~el~~ 294 (372)
.+++..+..........-.+|++|+++|.+..+.. ++. ...+..++ .++. ++|.+.=..|.+.+.
T Consensus 75 ~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~-p~~-~~~l~~~~~~~yt~-~~i~~mE~~IL~~L~ 141 (252)
T 1f5q_B 75 ALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYM-PIK-ATQLAYLCGGATTA-DKLLTLEVKSLDTLS 141 (252)
T ss_dssp HHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSS-CCC-HHHHHHHHCTTCCH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcC-CCC-HHHHHHHhCCCCCH-HHHHHHHHHHHHHCC
Confidence 33433333334445566778999999999876532 211 12233333 5788 888887777776554
No 40
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=20.85 E-value=2.7e+02 Score=22.76 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHhhhhc--cccCCcccccee
Q 017406 98 EVVEWVLRVKAHF--------GFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV--DETQVPLLLDLQ 167 (372)
Q Consensus 98 ~~v~Wi~~v~~~~--------~l~~~T~~lAv~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~--eE~~vP~l~dl~ 167 (372)
++|-|+..|-+.+ +|=..+-..-|+++-|=+-.-.+.. .-.+|-+..|||+||--+ .|+..|. +-+.
T Consensus 29 ~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~~s--e~eLqa~~lTCLYlsYSYmGNEISYPL-KPFl 105 (149)
T 3o0g_D 29 DPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGS--DHELQAVLLTCLYLSYSYMGNEISYPL-KPFL 105 (149)
T ss_dssp HHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTCCS--HHHHHHHHHHHHHHHHHHHCSSSCCCS-GGGC
T ss_pred hhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccccCC--HHHHHHHHHHHHHHHHHHhcccccccC-cchh
Confidence 6788888887653 3322222223344444333333332 234999999999999888 5665554 3344
Q ss_pred ecCCCccc
Q 017406 168 VKDPKYVF 175 (372)
Q Consensus 168 v~~~~~~f 175 (372)
|+.++-.|
T Consensus 106 v~~~k~~F 113 (149)
T 3o0g_D 106 VESCKEAF 113 (149)
T ss_dssp CCSCHHHH
T ss_pred hcccHHHH
Confidence 55544333
No 41
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=20.81 E-value=1.6e+02 Score=22.53 Aligned_cols=50 Identities=6% Similarity=0.109 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcCcccchhhhcCCChHHHHHHHHHHHHHHHh
Q 017406 241 YLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQQDKLKECYLLILELSR 294 (372)
Q Consensus 241 ~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~e~v~~C~~~i~el~~ 294 (372)
+.--+-++||++.+.+..+..- -...|....|+.+ .+....+..+.++..
T Consensus 43 ~s~P~f~aaA~~~acr~~K~kV---dK~KL~~~s~lk~-~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 43 LSRPLFTSAALLSACKILKLKV---DKNKMVATSGVKK-AIFDRLCKQLEKIGQ 92 (95)
T ss_dssp TTSHHHHHHHHHHHHHHTTCCC---CHHHHHHTTCBCH-HHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHccCC---CHHHHHHHHCCCH-HHHHHHHHHHHHHHH
Confidence 3334567888888888776432 2467888999999 999999988887764
Done!