Query 017407
Match_columns 372
No_of_seqs 132 out of 155
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 08:18:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 5E-123 1E-127 888.5 21.3 276 70-351 4-284 (294)
2 cd04185 GT_2_like_b Subfamily 94.0 0.18 4E-06 43.6 6.7 99 183-326 78-176 (202)
3 cd04186 GT_2_like_c Subfamily 93.2 0.22 4.9E-06 40.5 5.6 92 183-323 73-165 (166)
4 TIGR01556 rhamnosyltran L-rham 93.1 0.34 7.4E-06 44.9 7.3 127 183-323 72-201 (281)
5 cd02510 pp-GalNAc-T pp-GalNAc- 89.2 2.9 6.3E-05 39.3 9.4 143 183-329 82-232 (299)
6 cd02526 GT2_RfbF_like RfbF is 89.0 0.86 1.9E-05 40.2 5.4 126 184-323 75-204 (237)
7 cd02525 Succinoglycan_BP_ExoA 87.0 2.1 4.5E-05 37.6 6.5 128 183-324 80-209 (249)
8 cd02520 Glucosylceramide_synth 83.9 1.4 2.9E-05 38.7 3.9 93 183-323 85-177 (196)
9 PF13641 Glyco_tranf_2_3: Glyc 83.8 1.7 3.6E-05 38.3 4.4 124 183-323 85-210 (228)
10 cd06442 DPM1_like DPM1_like re 80.8 1.8 4E-05 37.7 3.5 36 183-218 77-112 (224)
11 cd06421 CESA_CelA_like CESA_Ce 80.3 1.2 2.6E-05 39.0 2.2 125 183-324 83-212 (234)
12 cd04195 GT2_AmsE_like GT2_AmsE 79.2 1.2 2.6E-05 38.3 1.8 119 182-321 78-199 (201)
13 COG1216 Predicted glycosyltran 77.3 11 0.00024 36.1 7.9 137 185-328 85-225 (305)
14 PLN02726 dolichyl-phosphate be 73.8 7.7 0.00017 35.3 5.6 38 183-220 92-129 (243)
15 cd06433 GT_2_WfgS_like WfgS an 70.1 7.2 0.00016 32.6 4.2 37 183-219 74-111 (202)
16 cd06437 CESA_CaSu_A2 Cellulose 63.7 6.6 0.00014 35.0 2.9 130 183-326 86-216 (232)
17 cd06434 GT2_HAS Hyaluronan syn 62.6 4.3 9.2E-05 35.8 1.5 41 183-223 76-116 (235)
18 PF00535 Glycos_transf_2: Glyc 61.4 6.9 0.00015 31.3 2.4 38 183-220 77-114 (169)
19 cd04188 DPG_synthase DPG_synth 59.3 6.3 0.00014 34.6 2.0 37 183-219 81-117 (211)
20 PTZ00260 dolichyl-phosphate be 54.7 22 0.00048 35.1 5.1 192 107-318 69-287 (333)
21 cd06913 beta3GnTL1_like Beta 1 53.4 29 0.00064 30.6 5.2 126 183-325 83-211 (219)
22 PF01762 Galactosyl_T: Galacto 52.6 27 0.00059 31.3 5.0 177 92-306 6-186 (195)
23 PF13632 Glyco_trans_2_3: Glyc 52.5 19 0.00041 31.1 3.8 124 187-327 1-127 (193)
24 cd06435 CESA_NdvC_like NdvC_li 52.4 8.3 0.00018 34.2 1.6 124 184-321 84-207 (236)
25 PF12621 DUF3779: Phosphate me 50.4 17 0.00037 30.2 3.1 52 174-230 34-87 (95)
26 PF02434 Fringe: Fringe-like; 49.1 14 0.0003 35.4 2.6 125 182-331 84-215 (252)
27 cd04187 DPM1_like_bac Bacteria 42.9 23 0.00049 30.2 2.7 34 183-217 79-112 (181)
28 PF07976 Phe_hydrox_dim: Pheno 40.9 33 0.00071 31.1 3.6 72 77-157 34-125 (169)
29 PF13506 Glyco_transf_21: Glyc 39.9 20 0.00044 32.2 2.1 122 183-323 30-153 (175)
30 cd00761 Glyco_tranf_GTA_type G 39.4 26 0.00056 27.1 2.3 36 184-219 77-113 (156)
31 cd06423 CESA_like CESA_like is 37.4 21 0.00045 28.3 1.6 38 184-221 78-116 (180)
32 PF09258 Glyco_transf_64: Glyc 37.0 52 0.0011 31.6 4.5 95 117-212 8-103 (247)
33 cd04184 GT2_RfbC_Mx_like Myxoc 36.6 28 0.00061 29.8 2.4 37 183-219 82-119 (202)
34 KOG2287 Galactosyltransferases 34.6 41 0.0009 33.8 3.5 187 82-306 100-292 (349)
35 PF10111 Glyco_tranf_2_2: Glyc 32.9 73 0.0016 30.3 4.7 95 112-207 2-111 (281)
36 cd04192 GT_2_like_e Subfamily 32.7 34 0.00075 29.6 2.3 38 183-220 81-118 (229)
37 PF09828 Chrome_Resist: Chroma 32.3 28 0.00061 31.5 1.7 48 170-223 15-80 (135)
38 cd04196 GT_2_like_d Subfamily 31.7 40 0.00087 28.8 2.5 46 273-323 158-203 (214)
39 KOG2264 Exostosin EXT1L [Signa 31.3 59 0.0013 36.2 4.1 97 116-213 631-753 (907)
40 PF12996 DUF3880: DUF based on 30.3 25 0.00055 27.9 1.0 25 179-213 13-37 (79)
41 cd02522 GT_2_like_a GT_2_like_ 30.1 36 0.00078 29.6 2.0 41 183-223 71-111 (221)
42 cd06439 CESA_like_1 CESA_like_ 29.8 31 0.00067 30.9 1.6 40 183-222 108-147 (251)
43 TIGR03469 HonB hopene-associat 28.7 53 0.0012 32.7 3.2 33 185-217 134-166 (384)
44 KOG2547 Ceramide glucosyltrans 28.5 95 0.0021 32.9 4.9 165 108-315 113-289 (431)
45 cd06427 CESA_like_2 CESA_like_ 28.3 54 0.0012 29.6 2.9 38 183-220 83-122 (241)
46 TIGR02165 cas_GSU0054 CRISPR-a 26.2 14 0.00029 38.5 -1.5 35 257-303 74-108 (465)
47 cd06420 GT2_Chondriotin_Pol_N 25.4 48 0.001 27.8 1.9 26 183-208 78-103 (182)
48 PF09451 ATG27: Autophagy-rela 25.4 59 0.0013 31.5 2.8 26 18-43 201-226 (268)
49 PLN02867 Probable galacturonos 23.9 37 0.00079 36.9 1.1 34 174-208 334-367 (535)
50 cd06430 GT8_like_2 GT8_like_2 21.6 2.7E+02 0.0059 28.1 6.6 102 110-213 2-124 (304)
51 KOG1555 26S proteasome regulat 21.3 49 0.0011 33.8 1.3 41 254-294 80-120 (316)
52 PRK10927 essential cell divisi 20.5 75 0.0016 32.6 2.4 26 22-47 34-59 (319)
53 cd00505 Glyco_transf_8 Members 20.4 1.9E+02 0.004 27.0 4.9 89 108-208 30-118 (246)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=5e-123 Score=888.51 Aligned_cols=276 Identities=63% Similarity=1.132 Sum_probs=265.4
Q ss_pred cCCCCCCCCCCCCceecCCCcceecCCCCCCCCCCCCCCCcEEEEEecCccccchhHHhhcCCCCCcEEEEEEecCccCc
Q 017407 70 QCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDE 149 (372)
Q Consensus 70 q~~~~g~e~Lp~giv~~~sd~~lr~Lwg~p~~~~~~~~~k~Lla~~VG~kqk~~Vd~~v~kf~~~nFdvmLFhYDg~vd~ 149 (372)
||+|+|+|+||+|||+++||||||||||.|+++. +.++|||||||||+|||++||++|+|| ++|||||||||||+||+
T Consensus 4 ~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~-~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~ 81 (294)
T PF05212_consen 4 PCNPRGAERLPPGIVVRESDLELRPLWGNPSEDL-PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDE 81 (294)
T ss_pred CCCCCccccCCCCccccCCCceeeecCCCccccc-cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCc
Confidence 8999999999999999999999999999999886 568899999999999999999999999 99999999999999999
Q ss_pred ccccccccceeEEEeecccchhhhccccChhhhccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCCcee
Q 017407 150 WKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVH 229 (372)
Q Consensus 150 w~d~ews~~aiHvsa~kqtKWwfakRfLHPdiv~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~ 229 (372)
|+|||||++||||++.|||||||||||||||+|++|||||||||||+||+|+|+|||+||++|||||||||||++++++|
T Consensus 82 w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~ 161 (294)
T PF05212_consen 82 WDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIH 161 (294)
T ss_pred hhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred ecccccccCcccceeeecccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCC
Q 017407 230 HPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRT 309 (372)
Q Consensus 230 h~iT~R~~~~~vHrr~~~~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~ 309 (372)
|+||+|++++++||. .++.+.|.+++++||||||||||||||||+|||||||||||||+|||||||+|+||+ ++++
T Consensus 162 ~~iT~R~~~~~vhr~---~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~-~~~~ 237 (294)
T PF05212_consen 162 HPITKRRPDSEVHRK---TRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCA-GDRH 237 (294)
T ss_pred eeEEeecCCceeEec---cCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHh-cccc
Confidence 999999999999984 577888889999999999999999999999999999999999999999999999999 6899
Q ss_pred CcEEEEeeeeEEEeccccCCCCCCCccc-----ccCCCchhHHhhhC
Q 017407 310 KNVGVVDSEYIVHLGLPTLGVTTEPELN-----TVGQASDDLEQIAN 351 (372)
Q Consensus 310 ~kiGVVDa~~VvH~g~Ptlg~~~~~~~~-----~~~~~~~~~~~~~~ 351 (372)
+||||||||||+|+|+|||||++.+++. .++.++++|+++|+
T Consensus 238 ~kiGVVDs~~VvH~gvptLG~~~~~~~~~~~~~~Vr~r~~~E~~~F~ 284 (294)
T PF05212_consen 238 KKIGVVDSQYVVHTGVPTLGGQGNSEKGKDPREEVRRRSFAEMRIFQ 284 (294)
T ss_pred ccEEEEeeEEEEEcCCCcCCCccccccCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876443 68889999999985
No 2
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.00 E-value=0.18 Score=43.59 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=66.3
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCCceeecccccccCcccceeeecccCCCCCCCCCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHrr~~~~~~~~~C~~~~~~pp 262 (372)
+.+||+++.|+|..++..-++++.+.+++.+..+..|..-...+ +
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-----------------------------------~ 122 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-----------------------------------S 122 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-----------------------------------c
Confidence 68999999999999998888888887764455444443221100 1
Q ss_pred ccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEeccc
Q 017407 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLP 326 (372)
Q Consensus 263 cTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~g~P 326 (372)
+.++ +++|++|+.+ . .+.+.-..||=|.-+.+-+. ..+.++ .+.+..+.|....
T Consensus 123 ~~~~------~~~~~~~~~~-g-~~~~~~~~~~eD~~~~~r~~-~~G~~i-~~~~~~~~h~~~~ 176 (202)
T cd04185 123 FVGV------LISRRVVEKI-G-LPDKEFFIWGDDTEYTLRAS-KAGPGI-YVPDAVVVHKTAI 176 (202)
T ss_pred eEEE------EEeHHHHHHh-C-CCChhhhccchHHHHHHHHH-HcCCcE-EecceEEEEcccc
Confidence 1121 4889999876 2 24454567888887765443 246788 9999999999433
No 3
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.18 E-value=0.22 Score=40.53 Aligned_cols=92 Identities=20% Similarity=0.135 Sum_probs=61.7
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHh-CCcccCCCCCCCCCceeecccccccCcccceeeecccCCCCCCCCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAP 261 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~s~~i~h~iT~R~~~~~vHrr~~~~~~~~~C~~~~~~p 261 (372)
+.+|||++.|+|...+...+.++.+.+.+. +..+..+.
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 111 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK----------------------------------------- 111 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-----------------------------------------
Confidence 389999999999999888788877754432 22222222
Q ss_pred CccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 017407 262 PCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (372)
Q Consensus 262 pcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~ 323 (372)
+=.-+.+|++++|+.+= .+++.-..+|-|..+...+. ..+.+|..+....+.|.
T Consensus 112 -----~~~~~~~~~~~~~~~~~--~~~~~~~~~~eD~~~~~~~~-~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 -----VSGAFLLVRREVFEEVG--GFDEDFFLYYEDVDLCLRAR-LAGYRVLYVPQAVIYHH 165 (166)
T ss_pred -----CceeeEeeeHHHHHHcC--CCChhhhccccHHHHHHHHH-HcCCeEEEccceEEEec
Confidence 00124578999998753 23443334777887765543 24679999999999997
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=93.07 E-value=0.34 Score=44.91 Aligned_cols=127 Identities=15% Similarity=0.056 Sum_probs=72.9
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHh--CCcccCCCC-CCCCCceeecccccccCcccceeeecccCCCCCCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPAL-DPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 259 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPAL-d~~s~~i~h~iT~R~~~~~vHrr~~~~~~~~~C~~~~~ 259 (372)
+.+|||++.|+|..++.-.++++++.+++. +.-+..|.. +.+.. ...+..... + ...+. .... ..+
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~--~~~~~------~~~~-~~~ 140 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTS-RRLPAIHLD-G--LLLRQ------ISLD-GLT 140 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCc-ccCCceeec-c--cceee------eccc-ccC
Confidence 479999999999999998899999988876 567777764 33221 111111111 1 00000 0000 001
Q ss_pred CCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 017407 260 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (372)
Q Consensus 260 ~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~ 323 (372)
.+.-+.++=.-..+++|++++.+= + +++.--.++.|.-|..-+. ..+.++.++....+.|.
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~iG-~-fde~~fi~~~D~e~~~R~~-~~G~~i~~~~~~~~~H~ 201 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRLG-M-MDEELFIDHVDTEWSLRAQ-NYGIPLYIDPDIVLEHR 201 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHhC-C-ccHhhcccchHHHHHHHHH-HCCCEEEEeCCEEEEEe
Confidence 111111110012368999999873 3 3343344677887754333 24578999999999998
No 5
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=89.22 E-value=2.9 Score=39.33 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=78.8
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCC-ceeeccccc-cc---CcccceeeecccCCCCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKS-EVHHPITAR-RR---NSKAHRRMYKYKGSGRCDDY 257 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~-~i~h~iT~R-~~---~~~vHrr~~~~~~~~~C~~~ 257 (372)
+..|||.+.|.|..++..-++++++.+.+..-.+.-|.+..-.+ ...+.-... .. ...++...........+...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 78999999999999999999999999998877777777643211 122221111 00 00011000000000000111
Q ss_pred CCCCCccceEEeecccccHHHHHHHhhhhcCCCcccch-hhhhhh-hhhcCCCCCcEEEEeeeeEEEecc-ccCC
Q 017407 258 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWG-LDIQLG-YCAQGDRTKNVGVVDSEYIVHLGL-PTLG 329 (372)
Q Consensus 258 ~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWG-LDf~w~-~caqg~~~~kiGVVDa~~VvH~g~-Ptlg 329 (372)
+..|..+.++-.-+=+++|++|+.+= . +......|| =|.-+. ++.+ .+.+|-++-...|.|... +..+
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vG-g-fDe~~~~~~~ED~Dl~~R~~~--~G~~i~~~p~a~v~H~~~~~~~~ 232 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELG-G-YDEGMDIWGGENLELSFKVWQ--CGGSIEIVPCSRVGHIFRRKRKP 232 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhC-C-CCCcccccCchhHHHHHHHHH--cCCeEEEeeccEEEEeccccCCC
Confidence 11222233333334468899998873 2 344455666 344442 2222 246899999999999866 4444
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=89.00 E-value=0.86 Score=40.21 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=62.4
Q ss_pred cccEEEEeccccccCCCCHHHHH---HHHH-HhCCcccCCCCCCCCCceeecccccccCcccceeeecccCCCCCCCCCC
Q 017407 184 EYNYIFLWDEDIGVENFNPRRYL---SIVK-DEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 259 (372)
Q Consensus 184 ~YDYIFLwDDDL~vd~f~i~ry~---~Ivr-~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHrr~~~~~~~~~C~~~~~ 259 (372)
.||||++.|+|..++...+++++ +... ...+.+.+|.............. +.....+ .. .. +.. .
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~--~~----~~~--~ 143 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGV-RKSGYKL--RI--QK----EGE--E 143 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccce-eccCccc--ee--cc----ccc--C
Confidence 68999999999999988888885 2222 22344555543322111111110 0000000 00 00 000 0
Q ss_pred CCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 017407 260 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (372)
Q Consensus 260 ~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~ 323 (372)
..+-..++=.-+-+|+|++++.+=. +.+.....|-|+.+...+. ..+.++..+....|.|.
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~gg--fd~~~~~~~eD~d~~~r~~-~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKVGG--FDEDLFIDYVDTEWCLRAR-SKGYKIYVVPDAVLKHE 204 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHhCC--CCHHHcCccchHHHHHHHH-HcCCcEEEEcCeEEEec
Confidence 0000001111112589999988732 2222223455777654443 24578999998888887
No 7
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=86.95 E-value=2.1 Score=37.63 Aligned_cols=128 Identities=9% Similarity=-0.042 Sum_probs=68.8
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCCceeecccccccCcccceeeecccCCCCCCCC-CCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDY-STAP 261 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHrr~~~~~~~~~C~~~-~~~p 261 (372)
+.+|||.+.|+|..++...+++.++..++.+..+.+................+.....+ ........... ....
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 154 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPL-----GSGGSAYRGGAVKIGY 154 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchh-----ccCCcccccccccccc
Confidence 47999999999999998889999988888887776655432111011100000000000 00000000000 0000
Q ss_pred CccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhh-hhhcCCCCCcEEEEeeeeEEEec
Q 017407 262 PCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLG-YCAQGDRTKNVGVVDSEYIVHLG 324 (372)
Q Consensus 262 pcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~-~caqg~~~~kiGVVDa~~VvH~g 324 (372)
.+++. .| +|+|++|+.+= . +++ ....|-|+.+. ++.+ .+.++..+....+.|..
T Consensus 155 ~~~~~--~~--~~~~~~~~~~g-~-~~~-~~~~~eD~~l~~r~~~--~G~~~~~~~~~~~~~~~ 209 (249)
T cd02525 155 VDTVH--HG--AYRREVFEKVG-G-FDE-SLVRNEDAELNYRLRK--AGYKIWLSPDIRVYYYP 209 (249)
T ss_pred ccccc--cc--eEEHHHHHHhC-C-CCc-ccCccchhHHHHHHHH--cCcEEEEcCCeEEEEcC
Confidence 01110 01 57899998763 2 222 23346787775 3443 36789999999998883
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=83.88 E-value=1.4 Score=38.67 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=55.0
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCCceeecccccccCcccceeeecccCCCCCCCCCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHrr~~~~~~~~~C~~~~~~pp 262 (372)
+.+|||++.|.|..++...+.++++... +|..+--.+. |
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~-------~~~~~~v~~~--------------------------~-------- 123 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLM-------DPGVGLVTCL--------------------------C-------- 123 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhh-------CCCCCeEEee--------------------------c--------
Confidence 6799999999998887777776665442 2322211110 0
Q ss_pred ccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 017407 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (372)
Q Consensus 263 cTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~ 323 (372)
++ ..+=+|+|++++.+=.+ .....-.+=|+.+...+. ..+.++..++...+.|.
T Consensus 124 ~~----g~~~~~r~~~~~~~ggf--~~~~~~~~eD~~l~~rl~-~~G~~i~~~~~~~~~~~ 177 (196)
T cd02520 124 AF----GKSMALRREVLDAIGGF--EAFADYLAEDYFLGKLIW-RLGYRVVLSPYVVMQPL 177 (196)
T ss_pred cc----CceeeeEHHHHHhccCh--HHHhHHHHHHHHHHHHHH-HcCCeEEEcchheeccC
Confidence 00 12347889999876322 221223467888876654 24678988888544443
No 9
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=83.79 E-value=1.7 Score=38.25 Aligned_cols=124 Identities=18% Similarity=0.118 Sum_probs=62.7
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCCceeecccccccCc--ccceeeecccCCCCCCCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNS--KAHRRMYKYKGSGRCDDYSTA 260 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~--~vHrr~~~~~~~~~C~~~~~~ 260 (372)
..+|||++.|+|..++...+.++++.+...+..+.|+........ ..++.-.... .-|.... . .......
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~--~~~~~~~ 156 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR--NWLTRLQDLFFARWHLRFR----S--GRRALGV 156 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC--CEEEE-TT--S-EETTTS-----T--T-B----
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC--CHHHHHHHHHHhhhhhhhh----h--hhcccce
Confidence 569999999999999999999999999778888888665332211 1111111000 0000000 0 0000011
Q ss_pred CCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 017407 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (372)
Q Consensus 261 ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~ 323 (372)
+.++| -+=+|+|++++.+-. ++. ..-|=|+.+...+.. .+.++.......|.|.
T Consensus 157 ~~~~G----~~~~~rr~~~~~~g~--fd~--~~~~eD~~l~~r~~~-~G~~~~~~~~~~v~~~ 210 (228)
T PF13641_consen 157 AFLSG----SGMLFRRSALEEVGG--FDP--FILGEDFDLCLRLRA-AGWRIVYAPDALVYHE 210 (228)
T ss_dssp S-B------TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHHH-TT--EEEEEEEEEEE-
T ss_pred eeccC----cEEEEEHHHHHHhCC--CCC--CCcccHHHHHHHHHH-CCCcEEEECCcEEEEe
Confidence 12222 123689999998852 344 445588888654432 4679999998888888
No 10
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=80.77 E-value=1.8 Score=37.67 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=26.8
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQ 218 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQ 218 (372)
+..|||++.|+|..++...+.++++.+.+.+-.+..
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 566999999999888777777777776555555443
No 11
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=80.26 E-value=1.2 Score=39.01 Aligned_cols=125 Identities=12% Similarity=-0.004 Sum_probs=72.1
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHH-hCCcccCCCCC--CCCCceeeccccccc--CcccceeeecccCCCCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKD-EGLEISQPALD--PVKSEVHHPITARRR--NSKAHRRMYKYKGSGRCDDY 257 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~-~gLeISQPALd--~~s~~i~h~iT~R~~--~~~vHrr~~~~~~~~~C~~~ 257 (372)
+.+|||.+.|+|..++...+.++++.+.+ .++.+.++... .... .. .+..... ...+.+.... +...+
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--~~~~~--- 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDP-FD-WLADGAPNEQELFYGVIQP--GRDRW--- 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCc-ch-hHHHHHHHHHHHHHHHHHH--HHhhc---
Confidence 58999999999999999999999999987 77777776521 1111 10 1111100 0000000000 00000
Q ss_pred CCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEec
Q 017407 258 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 324 (372)
Q Consensus 258 ~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~g 324 (372)
++ .++=.+.=+|+|++++.+-.+ ++ ...+-|+.+..-+. ..+.+|..++...+.|..
T Consensus 156 ----~~-~~~~g~~~~~r~~~~~~ig~~--~~--~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~~~~ 212 (234)
T cd06421 156 ----GA-AFCCGSGAVVRREALDEIGGF--PT--DSVTEDLATSLRLH-AKGWRSVYVPEPLAAGLA 212 (234)
T ss_pred ----CC-ceecCceeeEeHHHHHHhCCC--Cc--cceeccHHHHHHHH-HcCceEEEecCccccccC
Confidence 11 122234457899999987532 22 34578988874332 245689888888888774
No 12
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=79.16 E-value=1.2 Score=38.25 Aligned_cols=119 Identities=11% Similarity=0.050 Sum_probs=63.7
Q ss_pred hccccEEEEeccccccCCCCHHHHHHHHHHh-CCcccCCCCCCC--CCceeecccccccCcccceeeecccCCCCCCCCC
Q 017407 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPV--KSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYS 258 (372)
Q Consensus 182 v~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~--s~~i~h~iT~R~~~~~vHrr~~~~~~~~~C~~~~ 258 (372)
.+.+|||++.|+|..++.-.+++.++.++++ +..+..+....- .+.-++... .+. ..+..+.. ....|.
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~-~~~~~~--- 149 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR--LPT--SHDDILKF-ARRRSP--- 149 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc--CCC--CHHHHHHH-hccCCC---
Confidence 3689999999999999888888888887653 566666543211 111111111 010 00000000 001111
Q ss_pred CCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEE
Q 017407 259 TAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIV 321 (372)
Q Consensus 259 ~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~Vv 321 (372)
+..++=+|.|++++.+-.+ ... -++-|+.+...+- ..+.++..+....+.
T Consensus 150 --------~~~~~~~~rr~~~~~~g~~--~~~--~~~eD~~~~~r~~-~~g~~~~~~~~~~~~ 199 (201)
T cd04195 150 --------FNHPTVMFRKSKVLAVGGY--QDL--PLVEDYALWARML-ANGARFANLPEILVK 199 (201)
T ss_pred --------CCChHHhhhHHHHHHcCCc--CCC--CCchHHHHHHHHH-HcCCceecccHHHhh
Confidence 1111226899999887532 232 5677888765442 235677777654443
No 13
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=77.26 E-value=11 Score=36.08 Aligned_cols=137 Identities=15% Similarity=0.038 Sum_probs=82.9
Q ss_pred ccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCCceeecccccccCcccceeeecccCCCCCCC----CCCC
Q 017407 185 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDD----YSTA 260 (372)
Q Consensus 185 YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHrr~~~~~~~~~C~~----~~~~ 260 (372)
|+|++++++|..++...++++++.+++.+-...=+++-.+... .-.+..+........... ....+.. ...-
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 160 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDE-SLYIDRRGGESDGLTGGW---RASPLLEIAPDLSSY 160 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCC-Ccchheeccccccccccc---eecccccccccccch
Confidence 5599999999999999999999999999877776665443221 111111111100000000 0001111 0111
Q ss_pred CCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEeccccC
Q 017407 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTL 328 (372)
Q Consensus 261 ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~g~Ptl 328 (372)
+.+-+++..-+-.++|++++.+=. +...-=.+.-|.-|.+-+.. .+.++..+=+-.|.|...-+.
T Consensus 161 ~~~~~~~~G~~~li~~~~~~~vG~--~de~~F~y~eD~D~~~R~~~-~G~~i~~~p~a~i~H~~g~s~ 225 (305)
T COG1216 161 LEVVASLSGACLLIRREAFEKVGG--FDERFFIYYEDVDLCLRARK-AGYKIYYVPDAIIYHKIGSSK 225 (305)
T ss_pred hhhhhhcceeeeEEcHHHHHHhCC--CCcccceeehHHHHHHHHHH-cCCeEEEeeccEEEEeccCCC
Confidence 223336777778899999998853 44555666677777655542 356899999999999844333
No 14
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=73.81 E-value=7.7 Score=35.32 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=31.6
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 220 (372)
+..|||++.|.|...+...++++++.+.+.+.++....
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGT 129 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 67899999999999988889999998877777665443
No 15
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=70.09 E-value=7.2 Score=32.65 Aligned_cols=37 Identities=8% Similarity=-0.049 Sum_probs=27.4
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHH-HHhCCcccCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQP 219 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Iv-r~~gLeISQP 219 (372)
+..|||++.|+|..++.-.+.+.++.. +..+..+...
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g 111 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYG 111 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEe
Confidence 578999999999999988888888444 3334544443
No 16
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=63.71 E-value=6.6 Score=35.02 Aligned_cols=130 Identities=15% Similarity=0.076 Sum_probs=68.8
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCCceeeccc-ccccCcccceeeecccCCCCCCCCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPIT-ARRRNSKAHRRMYKYKGSGRCDDYSTAP 261 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT-~R~~~~~vHrr~~~~~~~~~C~~~~~~p 261 (372)
+.+|||++.|.|..++...++++..+....+..+.|+-+......-++ ++ .+.-....| +..+..++ ...
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~-----~~~ 156 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSL-LTRVQAMSLDYH---FTIEQVAR-----SST 156 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCch-hhHhhhhhHHhh---hhHhHhhH-----hhc
Confidence 689999999999999988888877777666666666543210000000 10 000000000 00000000 000
Q ss_pred CccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEeccc
Q 017407 262 PCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLP 326 (372)
Q Consensus 262 pcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~g~P 326 (372)
.+...+=.++-+|+|++|+.+-.+ .+. ..+=|+.+...+. .++.++..++...|.|...+
T Consensus 157 ~~~~~~~g~~~~~rr~~~~~vgg~--~~~--~~~ED~~l~~rl~-~~G~~~~~~~~~~v~~~~~~ 216 (232)
T cd06437 157 GLFFNFNGTAGVWRKECIEDAGGW--NHD--TLTEDLDLSYRAQ-LKGWKFVYLDDVVVPAELPA 216 (232)
T ss_pred CCeEEeccchhhhhHHHHHHhCCC--CCC--cchhhHHHHHHHH-HCCCeEEEeccceeeeeCCc
Confidence 011111122237999999887432 332 2457887765543 24679999998888887333
No 17
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=62.59 E-value=4.3 Score=35.78 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=36.1
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDP 223 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 223 (372)
+.+|||++.|+|..++...+++.++.+...+..+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 58999999999999999999999999988888888877544
No 18
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=61.36 E-value=6.9 Score=31.33 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=29.9
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 220 (372)
+..|||++.|+|..++.-.++++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 67789999999999999999999999999776554433
No 19
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=59.29 E-value=6.3 Score=34.62 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=27.7
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQP 219 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQP 219 (372)
+..|||++.|.|...+...+.++++.+.+.+..+...
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 4569999999998888777888777765555555443
No 20
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=54.67 E-value=22 Score=35.13 Aligned_cols=192 Identities=17% Similarity=0.157 Sum_probs=96.0
Q ss_pred CCCcEEEEEecCccccchhHHhhcC-----------CCCCcEEEEEEecCccCcccc--cccccc------eeEEE--ee
Q 017407 107 PPMNLLAIAAGIKQKKIVDQIVRKF-----------PSKDFVVMLFHYDGVVDEWKD--LVWADR------AIHVS--AA 165 (372)
Q Consensus 107 ~~k~Lla~~VG~kqk~~Vd~~v~kf-----------~~~nFdvmLFhYDg~vd~w~d--~ews~~------aiHvs--a~ 165 (372)
.++--+++|+ +++..++.++++.- +..++.|++ --||+.|+=.+ -++.++ -+++. ..
T Consensus 69 ~~~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIV-VDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 69 DVDLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIII-VNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CeEEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEE-EeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 4455677775 55555666655532 122555544 47888775322 112111 14443 23
Q ss_pred cccchhhhccccChhhhccccEEEEeccccccCCCCHHHHHHHHHH---hCCcccCCCCCCC-CC-ceeecccccc-cCc
Q 017407 166 NQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKD---EGLEISQPALDPV-KS-EVHHPITARR-RNS 239 (372)
Q Consensus 166 kqtKWwfakRfLHPdiv~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~---~gLeISQPALd~~-s~-~i~h~iT~R~-~~~ 239 (372)
|+.|-.=.+.=+ -.+..|||++.|.|...+..++.++++.+++ .+.++..-+.... .+ ....+--.|+ -..
T Consensus 147 N~G~~~A~~~Gi---~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~ 223 (333)
T PTZ00260 147 NKGKGGAVRIGM---LASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMY 223 (333)
T ss_pred CCChHHHHHHHH---HHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHH
Confidence 555543111111 1267899999999999999999999998875 4555544332211 11 0111111111 111
Q ss_pred ccceeeecccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeee
Q 017407 240 KAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSE 318 (372)
Q Consensus 240 ~vHrr~~~~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~ 318 (372)
.+|.. .+.-.+..-.| ..+||- +|+|++++-+.. +-...+|+.|..+-..+.. .+.+|+-|--.
T Consensus 224 ~~~~l-~~~~~~~~i~D-----~~~Gfk-----~~~r~~~~~i~~---~~~~~~~~fd~Ell~~a~~-~g~~I~EvPv~ 287 (333)
T PTZ00260 224 GFHFI-VNTICGTNLKD-----TQCGFK-----LFTRETARIIFP---SLHLERWAFDIEIVMIAQK-LNLPIAEVPVN 287 (333)
T ss_pred HHHHH-HHHHcCCCccc-----CCCCeE-----EEeHHHHHHHhh---hccccCccchHHHHHHHHH-cCCCEEEEcee
Confidence 12211 00000000111 222333 789999987642 2234688888888777652 33445544433
No 21
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=53.39 E-value=29 Score=30.59 Aligned_cols=126 Identities=14% Similarity=0.013 Sum_probs=64.2
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCC--CCCCceeec-ccccccCcccceeeecccCCCCCCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD--PVKSEVHHP-ITARRRNSKAHRRMYKYKGSGRCDDYST 259 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd--~~s~~i~h~-iT~R~~~~~vHrr~~~~~~~~~C~~~~~ 259 (372)
+..|||++.|+|...+...+++.+..+.+..-.+.-+... +......+. .........+....+ + ++
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~ 152 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTRWINTLTREQLLTQVY-------T---SH 152 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHHHHHhcCHHHHHHHHH-------h---hc
Confidence 6899999999999999888888877776554333222211 100000000 000000000000000 0 11
Q ss_pred CCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEecc
Q 017407 260 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGL 325 (372)
Q Consensus 260 ~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~g~ 325 (372)
+| ++ -+-.-+++|++|+.+= . +++..-+.+=|+-+.+.+. ..+.+|.-+|...+.++..
T Consensus 153 ~~-~~---~~~~~~~rr~~~~~~g-~-f~~~~~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~yr~~ 211 (219)
T cd06913 153 GP-TV---IMPTWFCSREWFSHVG-P-FDEGGKGVPEDLLFFYEHL-RKGGGVYRVDRCLLLYRYH 211 (219)
T ss_pred CC-cc---ccccceeehhHHhhcC-C-ccchhccchhHHHHHHHHH-HcCCceEEEcceeeeeeec
Confidence 11 11 1111247899998764 2 3443335567888765432 2357899999877777633
No 22
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=52.65 E-value=27 Score=31.27 Aligned_cols=177 Identities=17% Similarity=0.202 Sum_probs=93.4
Q ss_pred eecCCCCCCCCCCCCCCCcEEEEEecCcc--ccchhHHhhcCCCCCcEEEEEEecCccCcccccccccceeEEEeecccc
Q 017407 92 MRPLWSSPSKLNNQRPPMNLLAIAAGIKQ--KKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTK 169 (372)
Q Consensus 92 lr~Lwg~p~~~~~~~~~k~Lla~~VG~kq--k~~Vd~~v~kf~~~nFdvmLFhYDg~vd~w~d~ews~~aiHvsa~kqtK 169 (372)
+|.-||++.... ..+.-+.+=+|... ...+++.+++-....=||+++-+ +|.+..+.. +.+. ..+
T Consensus 6 IR~TW~~~~~~~---~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt~--K~~~-----~~~ 72 (195)
T PF01762_consen 6 IRETWGNQRNFK---GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLTL--KTLA-----GLK 72 (195)
T ss_pred HHHHHhcccccC---CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhhH--HHHH-----HHH
Confidence 467799876432 24456666678776 45566766654233347776544 454544421 1111 123
Q ss_pred hhhhccccChhhhccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCCceeecccccccCcccc--eeeec
Q 017407 170 WWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAH--RRMYK 247 (372)
Q Consensus 170 WwfakRfLHPdiv~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vH--rr~~~ 247 (372)
|- .+.+ .+++||+.-|||+-| ++.++++..++.-.+.+.+.+... .....-..|.+.++.+ ...|.
T Consensus 73 w~-~~~c------~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~--~~~~~~~~r~~~~kw~v~~~~y~ 140 (195)
T PF01762_consen 73 WA-SKHC------PNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG--CIKNGPPIRDPSSKWYVSEEEYP 140 (195)
T ss_pred HH-HhhC------CchhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc--cccCCccccccccCceeeeeecc
Confidence 33 3332 358999999999988 556666666666333333333321 1222223333332211 11110
Q ss_pred ccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcC
Q 017407 248 YKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQG 306 (372)
Q Consensus 248 ~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg 306 (372)
...-| .|..+.+=++|+++.+.+.... .....-+-=|--+|.|++.
T Consensus 141 ---------~~~yP---~y~~G~~yvls~~~v~~i~~~~-~~~~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 141 ---------DDYYP---PYCSGGGYVLSSDVVKRIYKAS-SHTPFFPLEDVFIGILAEK 186 (195)
T ss_pred ---------cccCC---CcCCCCeEEecHHHHHHHHHHh-hcCCCCCchHHHHHHHHHH
Confidence 11223 3445677789999998887543 2333333445556888763
No 23
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=52.51 E-value=19 Score=31.14 Aligned_cols=124 Identities=17% Similarity=0.130 Sum_probs=67.8
Q ss_pred EEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCCceeecccccccCccc--ceeee-cccCCCCCCCCCCCCCc
Q 017407 187 YIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKA--HRRMY-KYKGSGRCDDYSTAPPC 263 (372)
Q Consensus 187 YIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~v--Hrr~~-~~~~~~~C~~~~~~ppc 263 (372)
||.+.|+|-.++.....+..+.++.-+..+.|+...... ....+|.-...... |.... .....+.|.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 70 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPL-------- 70 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCc--------
Confidence 789999999999988899988888558888888876532 11112221111000 00000 000111111
Q ss_pred cceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEecccc
Q 017407 264 IGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPT 327 (372)
Q Consensus 264 TgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~g~Pt 327 (372)
++=.-.=++++++++.+= -.+ ..--.|=|..+..-+. ..+.+++.+++..+ |+..|.
T Consensus 71 --~~~G~~~~~r~~~l~~vg--~~~-~~~~~~ED~~l~~~l~-~~G~~~~~~~~~~~-~~~~p~ 127 (193)
T PF13632_consen 71 --FLSGSGMLFRREALREVG--GFD-DPFSIGEDMDLGFRLR-RAGYRIVYVPDAIV-YTEAPP 127 (193)
T ss_pred --cccCcceeeeHHHHHHhC--ccc-ccccccchHHHHHHHH-HCCCEEEEecccce-eeeCCC
Confidence 111334578899998762 122 1123335666653222 23579999998855 553554
No 24
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=52.41 E-value=8.3 Score=34.18 Aligned_cols=124 Identities=15% Similarity=0.027 Sum_probs=65.2
Q ss_pred cccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCCceeecccccccCcccceeeecccCCCCCCCCCCCCCc
Q 017407 184 EYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPC 263 (372)
Q Consensus 184 ~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHrr~~~~~~~~~C~~~~~~ppc 263 (372)
.||||.+.|+|..++.-.+.++++.+++.+..+.|+...-..+. ........ ..... ..+..... +.. ...+
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~--~~~---~~~~ 155 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGE-ESLFKRMC-YAEYK-GFFDIGMV--SRN---ERNA 155 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCC-ccHHHHHH-hHHHH-HHHHHHhc--ccc---ccCc
Confidence 49999999999999998899998888766777766543211110 11111000 00000 00000000 000 0011
Q ss_pred cceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEE
Q 017407 264 IGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIV 321 (372)
Q Consensus 264 TgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~Vv 321 (372)
.++-..+-+|+|++++.+= . +++... +=|+.+..-+. ..+.++..++...+.
T Consensus 156 -~~~~g~~~~~rr~~~~~iG-g-f~~~~~--~eD~dl~~r~~-~~G~~~~~~~~~~~~ 207 (236)
T cd06435 156 -IIQHGTMCLIRRSALDDVG-G-WDEWCI--TEDSELGLRMH-EAGYIGVYVAQSYGH 207 (236)
T ss_pred -eEEecceEEEEHHHHHHhC-C-CCCccc--cchHHHHHHHH-HCCcEEEEcchhhcc
Confidence 1222333479999999873 2 233222 45888765553 246788888765443
No 25
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=50.40 E-value=17 Score=30.24 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=39.7
Q ss_pred ccccChhhhccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCC--CCCCCCceee
Q 017407 174 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA--LDPVKSEVHH 230 (372)
Q Consensus 174 kRfLHPdiv~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA--Ld~~s~~i~h 230 (372)
.-|+||.+.++--.|||+-|++|+.... ++-.++.|+.||.-+ |+. +|++.|
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~gA~lde-kgkv~~ 87 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEGATLDE-KGKVVW 87 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCCeEEcc-CCCEEE
Confidence 4589999999999999999999997644 455677778888765 444 345544
No 26
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=49.10 E-value=14 Score=35.40 Aligned_cols=125 Identities=22% Similarity=0.228 Sum_probs=54.4
Q ss_pred hccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCCceeecccccccCcccceeeecccCCCCCCCCCCCC
Q 017407 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAP 261 (372)
Q Consensus 182 v~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHrr~~~~~~~~~C~~~~~~p 261 (372)
-..+|++++.|||.-| +++++.++...++ -+||-.=...+ ..++++...+.. .+ + ...
T Consensus 84 ~~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~--~~~~~yiG~~~-~~~~~~~~~~~~-~~------~---------~~~ 141 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYV---NVENLRRLLSKYD--PSEPIYIGRPS-GDRPIEIIHRFN-PN------K---------SKD 141 (252)
T ss_dssp HHT-SEEEEEETTEEE----HHHHHHHHTTS---TTS--EEE-EE-----------------------------------
T ss_pred cCCceEEEEEeCCcee---cHHHHHHHHhhCC--CccCEEeeeec-cCccceeecccc-cc------c---------cCc
Confidence 3578999999999987 6777777777654 23443211111 112222210000 00 0 000
Q ss_pred CccceEEe-ecccccHHHHHHH--hh----hhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEeccccCCCC
Q 017407 262 PCIGWVEM-MAPVFSRAAWRCA--WY----MIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVT 331 (372)
Q Consensus 262 pcTgFVEi-MAPVFSR~Awrcv--wh----miqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~g~Ptlg~~ 331 (372)
.+-.|.-+ -.=|+||++.+.+ |. ..+.+....+.=|..+|+|++. --+|-.+++ .-.|..+|.+...
T Consensus 142 ~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~--~lgv~lt~s-~~fhs~~~~l~~~ 215 (252)
T PF02434_consen 142 SGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIEN--LLGVPLTHS-PLFHSHLENLQDY 215 (252)
T ss_dssp ----EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHH--TT---EEE--TT---SSS-GGG-
T ss_pred CceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHh--cCCcceeec-hhhcccCcccccC
Confidence 01112221 2246899998776 32 2333444467889999999973 234555665 5568878887544
No 27
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=42.88 E-value=23 Score=30.17 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=25.2
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCccc
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 217 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeIS 217 (372)
+.-|||++.|+|...+.-.++++++.+ +.+.++.
T Consensus 79 a~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~v 112 (181)
T cd04187 79 ARGDAVITMDADLQDPPELIPEMLAKW-EEGYDVV 112 (181)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHH-hCCCcEE
Confidence 455999999999998877778888763 3444443
No 28
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=40.92 E-value=33 Score=31.08 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=37.5
Q ss_pred CCCCCCceecCCCcceecCCCCCCCCCCCCCCCcEEEEEecCccccc----hh----------HHhhcCCC------CCc
Q 017407 77 EALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKI----VD----------QIVRKFPS------KDF 136 (372)
Q Consensus 77 e~Lp~giv~~~sd~~lr~Lwg~p~~~~~~~~~k~Lla~~VG~kqk~~----Vd----------~~v~kf~~------~nF 136 (372)
++||+.-|++.+|-...+|-. ......+=.|++++ |.-++.. ++ ..+++|.. .-|
T Consensus 34 ~Rlp~~~v~r~aD~~p~~l~~----~l~sdGrfri~vFa-gd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~ 108 (169)
T PF07976_consen 34 RRLPSAKVVRHADGNPVHLQD----DLPSDGRFRILVFA-GDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVF 108 (169)
T ss_dssp CB----EEEETTTTEEEEGGG----G--SSS-EEEEEEE-ETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSE
T ss_pred cccCCceEEEEcCCCChhHhh----hcccCCCEEEEEEe-CCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCee
Confidence 479999999999976666632 11122333566665 4433322 22 34456643 339
Q ss_pred EEEEEEecCccCccccccccc
Q 017407 137 VVMLFHYDGVVDEWKDLVWAD 157 (372)
Q Consensus 137 dvmLFhYDg~vd~w~d~ews~ 157 (372)
|++|+| -..++++||.+
T Consensus 109 ~~~~I~----~~~~~~~e~~d 125 (169)
T PF07976_consen 109 DVLLIH----SSPRDEVELFD 125 (169)
T ss_dssp EEEEEE----SS-CCCS-GGG
T ss_pred EEEEEe----cCCCCceeHHH
Confidence 999999 34567777764
No 29
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=39.88 E-value=20 Score=32.19 Aligned_cols=122 Identities=19% Similarity=0.094 Sum_probs=72.5
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHH--hCCcccCCCCCCCCCceeecccccccCcccceeeecccCCCCCCCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKD--EGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTA 260 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~--~gLeISQPALd~~s~~i~h~iT~R~~~~~vHrr~~~~~~~~~C~~~~~~ 260 (372)
++||||++.|+|+.++.-.+.+...-..+ .|+-=+.|-.-+.++ +.-.+-.-...+|-.++..
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~---~~~~l~~~~~~~~~~~~~a------------ 94 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARG---FWSRLEAAFFNFLPGVLQA------------ 94 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcC---HHHHHHHHHHhHHHHHHHH------------
Confidence 89999999999999998888887765554 344322333222222 1111111111222121111
Q ss_pred CCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 017407 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (372)
Q Consensus 261 ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~ 323 (372)
..-++|+=.|+=.|+|++++..= -++.+.+.-.=||.++..+. .++.+|...... +.|+
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~G--G~~~l~~~ladD~~l~~~~~-~~G~~v~~~~~~-v~~~ 153 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEIG--GFEALADYLADDYALGRRLR-ARGYRVVLSPYP-VVQT 153 (175)
T ss_pred hcCCCceecceeeeEHHHHHHcc--cHHHHhhhhhHHHHHHHHHH-HCCCeEEEcchh-eeec
Confidence 01245677788889999998752 23555667788999998776 356777776643 3454
No 30
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=39.40 E-value=26 Score=27.08 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=24.4
Q ss_pred cccEEEEeccccccCCCCHHHH-HHHHHHhCCcccCC
Q 017407 184 EYNYIFLWDEDIGVENFNPRRY-LSIVKDEGLEISQP 219 (372)
Q Consensus 184 ~YDYIFLwDDDL~vd~f~i~ry-~~Ivr~~gLeISQP 219 (372)
.+||+++.|+|..++...+.++ ....+..+..+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG 113 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec
Confidence 7999999999999888777776 23333334444443
No 31
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=37.36 E-value=21 Score=28.33 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=26.5
Q ss_pred cccEEEEeccccccCCCCHHHH-HHHHHHhCCcccCCCC
Q 017407 184 EYNYIFLWDEDIGVENFNPRRY-LSIVKDEGLEISQPAL 221 (372)
Q Consensus 184 ~YDYIFLwDDDL~vd~f~i~ry-~~Ivr~~gLeISQPAL 221 (372)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 8999999999998887777777 3444444444444443
No 32
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=37.04 E-value=52 Score=31.59 Aligned_cols=95 Identities=12% Similarity=0.205 Sum_probs=53.3
Q ss_pred cCccccchhHHhhcCCC-CCcEEEEEEecCccCcccccccccceeEEEeecccchhhhccccChhhhccccEEEEecccc
Q 017407 117 GIKQKKIVDQIVRKFPS-KDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDI 195 (372)
Q Consensus 117 G~kqk~~Vd~~v~kf~~-~nFdvmLFhYDg~vd~w~d~ews~~aiHvsa~kqtKWwfakRfLHPdiv~~YDYIFLwDDDL 195 (372)
..+......++|+.... ..-.=++....+...--...+|....+-|-...+++=-+-.||+.. ---+=|.|+..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~-~~i~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPD-PEIETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS---TT--SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCc-cccCcceEEEecCCc
Confidence 45555666666665532 2233233333332222223556665566666667776677887643 344579999999999
Q ss_pred ccCCCCHHHHHHHHHHh
Q 017407 196 GVENFNPRRYLSIVKDE 212 (372)
Q Consensus 196 ~vd~f~i~ry~~Ivr~~ 212 (372)
.++..+++.=|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999999888854
No 33
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=36.61 E-value=28 Score=29.78 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=29.9
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHH-HHhCCcccCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQP 219 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Iv-r~~gLeISQP 219 (372)
+.+|||++.|+|-.++...+++.++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 678999999999999888889999887 5556666544
No 34
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=34.59 E-value=41 Score=33.84 Aligned_cols=187 Identities=17% Similarity=0.241 Sum_probs=101.0
Q ss_pred CceecCCCcce----ecCCCCCCC-CCCCCCCCcEEEEEecCccccchhHHhhcCCCCCcEEEEEEecCccCcccccccc
Q 017407 82 GIVSKTSNLEM----RPLWSSPSK-LNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWA 156 (372)
Q Consensus 82 giv~~~sd~~l----r~Lwg~p~~-~~~~~~~k~Lla~~VG~kqk~~Vd~~v~kf~~~nFdvmLFhYDg~vd~w~d~ews 156 (372)
+|-....++.. |+=||+++. +.......-||+++.. +. .+++.|.+-....-||+.--|... +..+.+
T Consensus 100 ~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~--~~-~~~~~l~~Ea~~ygDIi~~df~Dt---y~nltl- 172 (349)
T KOG2287|consen 100 LVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSN--ED-KLNKLLADEARLYGDIIQVDFEDT---YFNLTL- 172 (349)
T ss_pred EEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCc--HH-HHHHHHHHHHHHhCCEEEEecccc---hhchHH-
Confidence 55667777765 577999875 1111222333333322 22 457777776566779988877443 333221
Q ss_pred cceeEEEeecccchhhhccccChhhhccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCCCCCceeec-cccc
Q 017407 157 DRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHP-ITAR 235 (372)
Q Consensus 157 ~~aiHvsa~kqtKWwfakRfLHPdiv~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~-iT~R 235 (372)
+.+++ -+|--.+ ...++||.=.|||+-+ +++.+++..++.. +|+=+-=.|.+.+. -..|
T Consensus 173 -Ktl~~-----l~w~~~~-------cp~akfi~K~DDDvfv---~~~~L~~~L~~~~----~~~~~~~~G~v~~~~~p~R 232 (349)
T KOG2287|consen 173 -KTLAI-----LLWGVSK-------CPDAKFILKIDDDVFV---NPDNLLEYLDKLN----DPSSDLYYGRVIQNAPPIR 232 (349)
T ss_pred -HHHHH-----HHHHHhc-------CCcceEEEeccCceEE---cHHHHHHHHhccC----CCCcceEEEeecccCCCCC
Confidence 11111 1111100 1379999999999987 5566666666665 33322222323222 2223
Q ss_pred ccCcccceeeecccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcC
Q 017407 236 RRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQG 306 (372)
Q Consensus 236 ~~~~~vHrr~~~~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg 306 (372)
.+.++- |-.+..-.|+ .-| .|+=+|.=|+|+++-+.+.. ....+..-|-=|-.++-|++.
T Consensus 233 ~~~~Kw----yVp~~~y~~~---~YP---~Y~sG~gYvis~~~a~~l~~-~s~~~~~~~iEDV~~g~~l~~ 292 (349)
T KOG2287|consen 233 DKTSKW----YVPESEYPCS---VYP---PYASGPGYVISGDAARRLLK-ASKHLKFFPIEDVFVGGCLAE 292 (349)
T ss_pred CCCCCC----ccCHHHCCCC---CCC---CcCCCceeEecHHHHHHHHH-HhcCCCccchHHHHHHHHHHH
Confidence 322210 0000001121 122 23446788999999999886 456777777777778999874
No 35
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=32.95 E-value=73 Score=30.30 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=51.6
Q ss_pred EEEEecCcccc-----chhHHh---hcC-CCCCcEEEEEEecCccCccc-cc-cccc--ceeEE-Eeecccc-hhhhccc
Q 017407 112 LAIAAGIKQKK-----IVDQIV---RKF-PSKDFVVMLFHYDGVVDEWK-DL-VWAD--RAIHV-SAANQTK-WWFAKRF 176 (372)
Q Consensus 112 la~~VG~kqk~-----~Vd~~v---~kf-~~~nFdvmLFhYDg~vd~w~-d~-ews~--~aiHv-sa~kqtK-WwfakRf 176 (372)
+++||..+... .+...+ +++ ...++.|++..++.. +++. ++ +..+ ..+++ .-..+.+ |-.++--
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 67899888742 232223 232 356888888887654 3341 11 1111 12211 1111111 2222110
Q ss_pred cChhhhccccEEEEeccccccCCCCHHHHHH
Q 017407 177 LHPDIVAEYNYIFLWDEDIGVENFNPRRYLS 207 (372)
Q Consensus 177 LHPdiv~~YDYIFLwDDDL~vd~f~i~ry~~ 207 (372)
---=-.+.-|||+++|-|+-++...++++++
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 0011237899999999999999888888888
No 36
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=32.67 E-value=34 Score=29.57 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.3
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 220 (372)
+.+|||++.|+|..++.-.++++++.+.+.+-...+.+
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 57999999999999988888888886666554444433
No 37
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=32.26 E-value=28 Score=31.54 Aligned_cols=48 Identities=23% Similarity=0.558 Sum_probs=33.6
Q ss_pred hhhhccccChhhhccccEEEEeccc-------cccCCCCH-----------HHHHHHHHHhCCcccCCCCCC
Q 017407 170 WWFAKRFLHPDIVAEYNYIFLWDED-------IGVENFNP-----------RRYLSIVKDEGLEISQPALDP 223 (372)
Q Consensus 170 WwfakRfLHPdiv~~YDYIFLwDDD-------L~vd~f~i-----------~ry~~Ivr~~gLeISQPALd~ 223 (372)
=|+++||+-|+- +++|+.++. .+--.||+ -.|=-++++||| .+|||..
T Consensus 15 ~WLIrRFIDp~A----~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~ 80 (135)
T PF09828_consen 15 PWLIRRFIDPEA----EFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALAR 80 (135)
T ss_pred HHHHHHhcCCCc----eEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHH
Confidence 489999998764 567777766 11223332 246678899999 8999976
No 38
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=31.67 E-value=40 Score=28.82 Aligned_cols=46 Identities=22% Similarity=0.128 Sum_probs=31.3
Q ss_pred cccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 017407 273 VFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (372)
Q Consensus 273 VFSR~AwrcvwhmiqNDLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~ 323 (372)
+|+|++++.+-.. ... ..|+-|+.+..++.. ..++.+++...+.|+
T Consensus 158 ~~r~~~~~~~~~~--~~~-~~~~~D~~~~~~~~~--~~~~~~~~~~~~~~r 203 (214)
T cd04196 158 AFNRELLELALPF--PDA-DVIMHDWWLALLASA--FGKVVFLDEPLILYR 203 (214)
T ss_pred eEEHHHHHhhccc--ccc-ccccchHHHHHHHHH--cCceEEcchhHHHHh
Confidence 6999999887432 221 267778777665542 458999998877666
No 39
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.29 E-value=59 Score=36.24 Aligned_cols=97 Identities=21% Similarity=0.302 Sum_probs=70.4
Q ss_pred ecCccccchhHHhhcCCCCCcEEEEEEecCc-------------------c-------CcccccccccceeEEEeecccc
Q 017407 116 AGIKQKKIVDQIVRKFPSKDFVVMLFHYDGV-------------------V-------DEWKDLVWADRAIHVSAANQTK 169 (372)
Q Consensus 116 VG~kqk~~Vd~~v~kf~~~nFdvmLFhYDg~-------------------v-------d~w~d~ews~~aiHvsa~kqtK 169 (372)
+|..-|+.-.++=-..+.++|+|+++-|.-. | +--+|+-|-+-.+-|....-.|
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WPdigvPv~viR~~~ 710 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWPDIGVPVEVIRVAE 710 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCcCCCCceEEEEccc
Confidence 3455666666666677889999999988532 2 2235788877777777666666
Q ss_pred hhhhccccChhhhccccEEEEeccccccCCCCHHHHHHHHHHhC
Q 017407 170 WWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 213 (372)
Q Consensus 170 WwfakRfLHPdiv~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~g 213 (372)
==+-+|||-.|.++ =|.|.-.|||..+-|..|-==|+.=|++.
T Consensus 711 NsLNNRFlPwd~IE-TEAvLS~DDDahLrhdEI~fgFRVWRE~R 753 (907)
T KOG2264|consen 711 NSLNNRFLPWDRIE-TEAVLSLDDDAHLRHDEIIFGFRVWRENR 753 (907)
T ss_pred ccccccccCchhhh-heeeeecccchhhhhhheeeeeehhhhcc
Confidence 66789999888875 58999999999998887755555555543
No 40
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=30.26 E-value=25 Score=27.89 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=19.3
Q ss_pred hhhhccccEEEEeccccccCCCCHHHHHHHHHHhC
Q 017407 179 PDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 213 (372)
Q Consensus 179 Pdiv~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~g 213 (372)
..+...|||||++|.+ .++-.|+.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 4778999999999974 455666666
No 41
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.13 E-value=36 Score=29.56 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=32.3
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDP 223 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 223 (372)
+..|||.+.|+|..++...+++.+......+..++.+....
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 111 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRF 111 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeee
Confidence 55899999999999998888888777777776666655443
No 42
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=29.79 E-value=31 Score=30.86 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=32.3
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD 222 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd 222 (372)
+..|||++.|+|...+...+.++++.++..+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 4569999999999999888888888887666766666543
No 43
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=28.75 E-value=53 Score=32.75 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=29.7
Q ss_pred ccEEEEeccccccCCCCHHHHHHHHHHhCCccc
Q 017407 185 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 217 (372)
Q Consensus 185 YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeIS 217 (372)
+|||++.|.|..++...+++.++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999988776654
No 44
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=28.52 E-value=95 Score=32.92 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=93.7
Q ss_pred CCcEEEEEecCccc---cchhHHhhcCCCCCcEEEEEEecCccCcccccccccceeEEEeecccchhhhccccChhh-hc
Q 017407 108 PMNLLAIAAGIKQK---KIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDI-VA 183 (372)
Q Consensus 108 ~k~Lla~~VG~kqk---~~Vd~~v~kf~~~nFdvmLFhYDg~vd~w~d~ews~~aiHvsa~kqtKWwfakRfLHPdi-v~ 183 (372)
+||=+-+.|-.++. +.|..+++|++ |-|-=||.=.-.|. . +.- ++ .++|-. .+
T Consensus 113 ~~~ElLfcv~s~eDpAi~vv~~Ll~kyp--~VdAklf~gG~~vg------~-npK-------------In-N~mpgy~~a 169 (431)
T KOG2547|consen 113 HKYELLFCVESSEDPAIEVVERLLKKYP--NVDAKLFFGGEKVG------L-NPK-------------IN-NMMPGYRAA 169 (431)
T ss_pred CceEEEEEEccCCCcHHHHHHHHHhhCC--CcceEEEEcccccc------c-Chh-------------hh-ccCHHHHHh
Confidence 36766677766554 34778899985 77777765322221 0 112 22 256665 69
Q ss_pred cccEEEEeccccccCCCCHHHHHHHHHH---hCCcccCCCCCCCCCceeeccccc-ccCcccceeeecccCCCCCCCCCC
Q 017407 184 EYNYIFLWDEDIGVENFNPRRYLSIVKD---EGLEISQPALDPVKSEVHHPITAR-RRNSKAHRRMYKYKGSGRCDDYST 259 (372)
Q Consensus 184 ~YDYIFLwDDDL~vd~f~i~ry~~Ivr~---~gLeISQPALd~~s~~i~h~iT~R-~~~~~vHrr~~~~~~~~~C~~~~~ 259 (372)
.||||++.|+||.+-..++-.+-.-|.+ .+|-=--|-.--..| -.+|+- ..-...|-|.|- +|
T Consensus 170 ~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~G---f~atle~~~fgTsh~r~yl---~~------- 236 (431)
T KOG2547|consen 170 KYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQG---FDATLEQVYFGTSHPRIYL---SG------- 236 (431)
T ss_pred cCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeecccc---chhhhhheeeccCCceEEE---cc-------
Confidence 9999999999999999998888777763 333322232111111 112221 122234545442 22
Q ss_pred CCCccceEE--eecccccHHHHHHHhhhhcCCCcccchh--hhhhhhhhcCCCCCcEEEE
Q 017407 260 APPCIGWVE--MMAPVFSRAAWRCAWYMIQNDLIHAWGL--DIQLGYCAQGDRTKNVGVV 315 (372)
Q Consensus 260 ~ppcTgFVE--iMAPVFSR~AwrcvwhmiqNDLvhGWGL--Df~w~~caqg~~~~kiGVV 315 (372)
+|++|+- .|--...++|+...=.+. ..||=| |+-..+|.- +|+.|.+++
T Consensus 237 --n~~~~~c~tgms~~mrK~~ld~~ggi~----~f~~yLaedyFaaksll-SRG~ksais 289 (431)
T KOG2547|consen 237 --NVLGFNCSTGMSSMMRKEALDECGGIS----AFGGYLAEDYFAAKSLL-SRGWKSAIS 289 (431)
T ss_pred --ccccccccccHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHH-hhhhhhhhc
Confidence 5666765 477667788874322221 133333 777788875 467776664
No 45
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=28.25 E-value=54 Score=29.65 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=29.8
Q ss_pred ccccEEEEeccccccCCCCHHHHHHHHHHh--CCcccCCC
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPA 220 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPA 220 (372)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 689999999999999988888888877643 44454544
No 46
>TIGR02165 cas_GSU0054 CRISPR-associated protein, GSU0054 family. This model represents a rare CRISPR-associated protein. So far, members are found in Geobacter sulfurreducens and in two unpublished genomes: Gemmata obscuriglobus and Actinomyces naeslundii.CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.
Probab=26.19 E-value=14 Score=38.46 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=25.5
Q ss_pred CCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhh
Q 017407 257 YSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYC 303 (372)
Q Consensus 257 ~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~c 303 (372)
.++.|.++.++|+.+ .|-||=..-|||+|++.+.-
T Consensus 74 e~~~pe~a~~~e~iv------------~~A~~i~hLGWGiDmv~G~a 108 (465)
T TIGR02165 74 DPTAPEFADHKEAIV------------EAAQNINHLGWGIDMVAGDA 108 (465)
T ss_pred CCCCchHHHHHHHHH------------HHHhhccccccchhhcccch
Confidence 355666666666533 67899999999999998743
No 47
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=25.43 E-value=48 Score=27.82 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=20.1
Q ss_pred ccccEEEEeccccccCCCCHHHHHHH
Q 017407 183 AEYNYIFLWDEDIGVENFNPRRYLSI 208 (372)
Q Consensus 183 ~~YDYIFLwDDDL~vd~f~i~ry~~I 208 (372)
+.+|||++.|+|..++..-+.+.++.
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHH
Confidence 68999999999998866555555544
No 48
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=25.41 E-value=59 Score=31.48 Aligned_cols=26 Identities=27% Similarity=0.315 Sum_probs=18.2
Q ss_pred cchhhhhHHHHHHHHHhhhceeeeec
Q 017407 18 SCLCSLFIAAALICSVYFIGSSFVAK 43 (372)
Q Consensus 18 ~~~~~~~~~~~~~~~~~f~~~~~~~~ 43 (372)
.++..+|+.++|.+++|||++++.-.
T Consensus 201 g~f~wl~i~~~l~~~~Y~i~g~~~n~ 226 (268)
T PF09451_consen 201 GFFTWLFIILFLFLAAYLIFGSWYNY 226 (268)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhheee
Confidence 34456777777777899998876543
No 49
>PLN02867 Probable galacturonosyltransferase
Probab=23.90 E-value=37 Score=36.92 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=30.1
Q ss_pred ccccChhhhccccEEEEeccccccCCCCHHHHHHH
Q 017407 174 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSI 208 (372)
Q Consensus 174 kRfLHPdiv~~YDYIFLwDDDL~vd~f~i~ry~~I 208 (372)
-||+=||++.++|-|...|+|+-|.. |+..++++
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 46777999999999999999999977 88888876
No 50
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=21.62 E-value=2.7e+02 Score=28.13 Aligned_cols=102 Identities=18% Similarity=0.270 Sum_probs=63.4
Q ss_pred cEEEEEecCccccchhHHhh--cCCCCCcEEEEEEecCccCcccc---ccc-------ccceeEEEeeccc---chhh--
Q 017407 110 NLLAIAAGIKQKKIVDQIVR--KFPSKDFVVMLFHYDGVVDEWKD---LVW-------ADRAIHVSAANQT---KWWF-- 172 (372)
Q Consensus 110 ~Lla~~VG~kqk~~Vd~~v~--kf~~~nFdvmLFhYDg~vd~w~d---~ew-------s~~aiHvsa~kqt---KWwf-- 172 (372)
.|..+++|..-...+..+.+ .+....+.+.+|.-| ...+|.. =+| ....+|-.....+ .|-.
T Consensus 2 ~~~vv~~g~~~~~~~~~lkSil~~n~~~l~Fhi~~d~-~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~ 80 (304)
T cd06430 2 HLAVVACGERLEETLTMLKSAIVFSQKPLRFHIFAED-QLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLF 80 (304)
T ss_pred EEEEEEcCCcHHHHHHHHHHHHHhCCCCEEEEEEECC-ccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhcc
Confidence 46778888774322222222 234567899999844 3333332 122 2334444433333 3421
Q ss_pred ----hccccChhhhccccEEEEeccccccCCCCHHHHHHHHHHhC
Q 017407 173 ----AKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 213 (372)
Q Consensus 173 ----akRfLHPdiv~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~g 213 (372)
..|++=|+++.++|.|.-.|-|+-+ .-+++.++++.+..+
T Consensus 81 ~~~~y~RL~ip~lLp~~dkvLYLD~Dii~-~~dI~eL~~~~~df~ 124 (304)
T cd06430 81 KPCAAQRLFLPSLLPDVDSLLYVDTDILF-LRPVEEIWSFLKKFN 124 (304)
T ss_pred cHHHHHHHHHHHHhhhhceEEEeccceee-cCCHHHHHHHHhhcC
Confidence 3467889999999999999999998 568999999866553
No 51
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=49 Score=33.83 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccc
Q 017407 254 CDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAW 294 (372)
Q Consensus 254 C~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGW 294 (372)
|+-+..+.-.|.|||-+-|||++.+.+-+-.-.+-.++-||
T Consensus 80 ~am~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~VVGW 120 (316)
T KOG1555|consen 80 FAMPQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPELVVGW 120 (316)
T ss_pred eccccccceecccchhccHHHHHHHHHHHHhcCCcceEEee
Confidence 44455566678999999999999999888766677788888
No 52
>PRK10927 essential cell division protein FtsN; Provisional
Probab=20.48 E-value=75 Score=32.56 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHhhhceeeeechhhh
Q 017407 22 SLFIAAALICSVYFIGSSFVAKENKE 47 (372)
Q Consensus 22 ~~~~~~~~~~~~~f~~~~~~~~~~~~ 47 (372)
..+.++++.+++.|||+.|..++.|.
T Consensus 34 ~~m~alAvavlv~fiGGLyFith~k~ 59 (319)
T PRK10927 34 PAMVAIAAAVLVTFIGGLYFITHHKK 59 (319)
T ss_pred hHHHHHHHHHHHHHhhheEEEecCCC
Confidence 44566666778889999888877754
No 53
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=20.42 E-value=1.9e+02 Score=26.95 Aligned_cols=89 Identities=15% Similarity=0.135 Sum_probs=54.6
Q ss_pred CCcEEEEEecCccccchhHHhhcCCCCCcEEEEEEecCccCcccccccccceeEEEeecccchhhhccccChhhhccccE
Q 017407 108 PMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNY 187 (372)
Q Consensus 108 ~k~Lla~~VG~kqk~~Vd~~v~kf~~~nFdvmLFhYDg~vd~w~d~ews~~aiHvsa~kqtKWwfakRfLHPdiv~~YDY 187 (372)
+-.+..++-|++.. +.+++-+-....++.+-+..++ ..++..+++.. -| -++.- ..|++=|+++..||-
T Consensus 30 ~~~~~il~~~is~~-~~~~L~~~~~~~~~~i~~~~~~--~~~~~~~~~~~--~~-----~~~~~-y~RL~i~~llp~~~k 98 (246)
T cd00505 30 PLRFHVLTNPLSDT-FKAALDNLRKLYNFNYELIPVD--ILDSVDSEHLK--RP-----IKIVT-LTKLHLPNLVPDYDK 98 (246)
T ss_pred CeEEEEEEccccHH-HHHHHHHHHhccCceEEEEecc--ccCcchhhhhc--Cc-----cccce-eHHHHHHHHhhccCe
Confidence 34577777776653 3444333222346777776664 33444444320 01 12222 356667899888999
Q ss_pred EEEeccccccCCCCHHHHHHH
Q 017407 188 IFLWDEDIGVENFNPRRYLSI 208 (372)
Q Consensus 188 IFLwDDDL~vd~f~i~ry~~I 208 (372)
|...|.|+.+- -|++.++++
T Consensus 99 vlYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 99 ILYVDADILVL-TDIDELWDT 118 (246)
T ss_pred EEEEcCCeeec-cCHHHHhhc
Confidence 99999999986 688888865
Done!