Query         017407
Match_columns 372
No_of_seqs    132 out of 155
Neff          3.6 
Searched_HMMs 29240
Date          Mon Mar 25 13:55:09 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017407hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1qg8_A Protein (spore coat pol  87.3     1.7 5.9E-05   37.3   7.5  120  183-325    87-216 (255)
  2 1xhb_A Polypeptide N-acetylgal  82.2     1.6 5.4E-05   42.0   5.4  140  182-327   112-262 (472)
  3 2ffu_A Ppgalnact-2, polypeptid  76.6     3.1 0.00011   40.6   5.5  139  182-326   144-293 (501)
  4 2z86_A Chondroitin synthase; G  64.5     4.4 0.00015   40.4   3.6  216  107-327    92-334 (625)
  5 2d7i_A Polypeptide N-acetylgal  64.0      20 0.00069   36.0   8.3  212  107-327   111-342 (570)
  6 3bcv_A Putative glycosyltransf  59.8     6.3 0.00021   33.3   3.3  109  107-220     4-120 (240)
  7 4fix_A UDP-galactofuranosyl tr  56.2      18 0.00063   37.5   6.7  130   86-220   159-305 (657)
  8 3f1y_A Mannosyl-3-phosphoglyce  55.9      15  0.0005   35.7   5.6  200  107-327    93-313 (387)
  9 2c0n_A A197; thermophil protei  29.4      19 0.00064   33.3   1.4   31  183-217    52-85  (203)
 10 2bo4_A Mannosylglycerate synth  29.3      32  0.0011   33.8   3.2  182  110-316     2-210 (397)
 11 2z86_A Chondroitin synthase; G  27.2      84  0.0029   31.1   5.8  108  107-219   374-490 (625)
 12 1omz_A Alpha-1,4-N-acetylhexos  25.7      33  0.0011   33.0   2.4  103  108-212    28-134 (293)
 13 2nxv_A ATP synthase subunits r  22.1      66  0.0022   28.2   3.6   29  183-211    73-101 (249)

No 1  
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=87.28  E-value=1.7  Score=37.28  Aligned_cols=120  Identities=8%  Similarity=-0.068  Sum_probs=68.6

Q ss_pred             ccccEEEEeccccccCCCCHHHHHHHHHHh-CCcccCCCC-----CCCCCceeecccccccCcccceeeecccCCCCCCC
Q 017407          183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPAL-----DPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDD  256 (372)
Q Consensus       183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPAL-----d~~s~~i~h~iT~R~~~~~vHrr~~~~~~~~~C~~  256 (372)
                      +..|||++.|+|..++...++++++.++++ +..+..+..     +.+. ...+.. .+ +...+.          .   
T Consensus        87 a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~----------~---  150 (255)
T 1qg8_A           87 AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENR-DIVKET-VR-PAAQVT----------W---  150 (255)
T ss_dssp             CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC----CEEEEE-EE-CCCSCB----------S---
T ss_pred             cCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCCC-cchhhc-cC-chHHHH----------H---
Confidence            688999999999999988899999999876 666665543     2221 111110 00 000000          0   


Q ss_pred             CCCCCCccceEEeecccccHHHHHHHh-hh--hcC-CCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEecc
Q 017407          257 YSTAPPCIGWVEMMAPVFSRAAWRCAW-YM--IQN-DLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGL  325 (372)
Q Consensus       257 ~~~~ppcTgFVEiMAPVFSR~Awrcvw-hm--iqN-DLvhGWGLDf~w~~caqg~~~~kiGVVDa~~VvH~g~  325 (372)
                           ....++-..+=+|+|++++.+- .+  ..+ +.....+-|+.+...+.. .+ ++..++...+.|+..
T Consensus       151 -----~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~-~g-~~~~~~~~~~~~r~~  216 (255)
T 1qg8_A          151 -----NAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNH-FY-PFYPLDEELDLNYIT  216 (255)
T ss_dssp             -----CCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTT-TC-CBEEEEEEEEEEEEC
T ss_pred             -----hhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHH-hC-CEEEecCcEEEEEEc
Confidence                 0111222234578999998763 21  011 222334567776544432 23 699999998888843


No 2  
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=82.19  E-value=1.6  Score=42.04  Aligned_cols=140  Identities=14%  Similarity=0.076  Sum_probs=72.0

Q ss_pred             hccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCC---CCCCceeec----ccccccCcccceeeecccC---C
Q 017407          182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD---PVKSEVHHP----ITARRRNSKAHRRMYKYKG---S  251 (372)
Q Consensus       182 v~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd---~~s~~i~h~----iT~R~~~~~vHrr~~~~~~---~  251 (372)
                      .+..|||++.|+|..++..-++++++.+++..-.+..|.++   .+.  +.+.    .+...-....+........   .
T Consensus       112 ~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (472)
T 1xhb_A          112 VSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDT--FEYMAGSDMTYGGFNWKLNFRWYPVPQREMD  189 (472)
T ss_dssp             HCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSS--CCEECCCTTEEEEECTTCCEEEEECCHHHHH
T ss_pred             hccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeeeeeEcCCC--ceeccCCCcccceeeccceeecccCCHHHHh
Confidence            36799999999999999999999999998876555556542   211  1110    0000000000000000000   0


Q ss_pred             CCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccch-hhhhhhhhhcCCCCCcEEEEeeeeEEEecccc
Q 017407          252 GRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWG-LDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPT  327 (372)
Q Consensus       252 ~~C~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWG-LDf~w~~caqg~~~~kiGVVDa~~VvH~g~Pt  327 (372)
                      .+- .....+-.+.++-..+=+|+|++|+.+=  -+++....|| =|+-+..-+. ..+.+|.++....|.|..+.+
T Consensus       190 ~~~-~~~~~~~~~~~~~g~~~~irr~~~~~iG--gfde~~~~~g~ED~dl~~R~~-~~G~~i~~~p~~~v~H~~~~~  262 (472)
T 1xhb_A          190 RRK-GDRTLPVRTPTMAGGLFSIDRDYFQEIG--TYDAGMDIWGGENLEISFRIW-QCGGTLEIVTCSHVGHVFRKA  262 (472)
T ss_dssp             HTT-TCTTSCEECSBCCSSSEEEEHHHHHHTT--SCCTTSCTTCCCCSHHHHHHH-HTTCEEEEEEEEEEEEEC---
T ss_pred             ccc-CCCCCcccCccccceeEEEEHHHHHHcC--CCCCcccccCchhHHHHHHHH-hcCCeEEEccCcEEEEEccCc
Confidence            000 0001111111222222357999998874  2455556674 3544432222 134699999999999986554


No 3  
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=76.56  E-value=3.1  Score=40.60  Aligned_cols=139  Identities=10%  Similarity=0.089  Sum_probs=74.6

Q ss_pred             hccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCC---CCCCceeecccccc--cC--cccc-eeeecccC--C
Q 017407          182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD---PVKSEVHHPITARR--RN--SKAH-RRMYKYKG--S  251 (372)
Q Consensus       182 v~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd---~~s~~i~h~iT~R~--~~--~~vH-rr~~~~~~--~  251 (372)
                      .+..|||++.|+|..++...++++++.+++..-.+..|.++   .+.  +.+.-....  ..  ...+ +..+....  .
T Consensus       144 ~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (501)
T 2ffu_A          144 AAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDN--FQYVGASADLKGGFDWNLVFKWDYMTPEQRR  221 (501)
T ss_dssp             HCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECTTT--CCEECBCSSEEEEECTTCCEEEEECCHHHHH
T ss_pred             hcCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeeeccCcCCC--ceeecCCcccceEeeecCCCccccCCHHHHh
Confidence            36789999999999999999999999999887777777642   221  111000000  00  0000 00000000  0


Q ss_pred             CCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccc-hhhhhhhhhhcCCCCCcEEEEeeeeEEEeccc
Q 017407          252 GRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAW-GLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLP  326 (372)
Q Consensus       252 ~~C~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGW-GLDf~w~~caqg~~~~kiGVVDa~~VvH~g~P  326 (372)
                      .+- .....|-.+.++-.-+=+|+|++++.+=  -+++....| |=|+-+..-+. ..+.+|.++....|.|..+.
T Consensus       222 ~~~-~~~~~~~~~~~~~g~~~~irr~~~~~iG--gfde~~~~~g~ED~dl~~Rl~-~~G~~i~~~p~~~v~H~~r~  293 (501)
T 2ffu_A          222 SRQ-GNPVAPIKTPMIAGGLFVMDKFYFEELG--KYDMMMDVWGGENLEISFRVW-QCGGSLEIIPCSRVGHVFRK  293 (501)
T ss_dssp             HTS-SCTTSCEECSSCCSSSEEEEHHHHHHTT--CCCTTCCSSSSHHHHHHHHHH-HTTCEEEEEEEEEEEECCCS
T ss_pred             hcc-CCCCCcccCccccceEEEEEHHHHHHhC--CCCccccccCcchHHHHHHHH-hcCCeEEEccCcEEEEEccC
Confidence            000 0001111111111223378999998874  245555667 45555533221 12468999999999998444


No 4  
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=64.51  E-value=4.4  Score=40.36  Aligned_cols=216  Identities=13%  Similarity=0.134  Sum_probs=102.2

Q ss_pred             CCCcEEEEEecCccccchhHHhhcC----CCCCcEEEEEEecCccCccccc-c-ccc-ceeEEEeecccchhhhccccCh
Q 017407          107 PPMNLLAIAAGIKQKKIVDQIVRKF----PSKDFVVMLFHYDGVVDEWKDL-V-WAD-RAIHVSAANQTKWWFAKRFLHP  179 (372)
Q Consensus       107 ~~k~Lla~~VG~kqk~~Vd~~v~kf----~~~nFdvmLFhYDg~vd~w~d~-e-ws~-~aiHvsa~kqtKWwfakRfLHP  179 (372)
                      .++.-|++|+= +....+...++..    ...++.|++.- ||..|+=.++ + +.+ .-+++........-.+.-.-.-
T Consensus        92 ~p~vsviIp~~-n~~~~l~~~l~sl~~q~~~~~~eiivvD-d~s~d~t~~~~~~~~~~~~i~~i~~~~~~~g~~~a~N~g  169 (625)
T 2z86_A           92 IDGLSIVIPTY-NRAKILAITLACLCNQKTIYDYEVIVAD-DGSKENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLG  169 (625)
T ss_dssp             CCCEEEEEEES-SCHHHHHHHHHHHHTCCCSSCEEEEEEE-ESCSSCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHHHH
T ss_pred             CCcEEEEEecC-CcHHHHHHHHHHHHhhccCCCeEEEEEe-CCCchhHHHHHHHhhhcCCeEEEEeCCCCcchhHHHHHH
Confidence            35566777764 3344554444433    12377777765 7776653221 1 111 1233333322211111110011


Q ss_pred             hhhccccEEEEeccccccCCCCHHHHHHHHHHhC-CcccCCCCCCCCCceeec------ccccc-cC----cccceeeec
Q 017407          180 DIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG-LEISQPALDPVKSEVHHP------ITARR-RN----SKAHRRMYK  247 (372)
Q Consensus       180 div~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~g-LeISQPALd~~s~~i~h~------iT~R~-~~----~~vHrr~~~  247 (372)
                      =-.+..|||++.|+|..++...+.++++.+++.. ..+.+|..-.+.....+.      -..+. +.    ..+......
T Consensus       170 ~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (625)
T 2z86_A          170 LRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQ  249 (625)
T ss_dssp             HHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC-------------
T ss_pred             HHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCchhhhhcc
Confidence            1136899999999999999999999999988643 444444321111000000      00000 00    000000000


Q ss_pred             ccCCCC------C-CCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccch-hhhhhhhhhcCCCCCcEEEEeeee
Q 017407          248 YKGSGR------C-DDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWG-LDIQLGYCAQGDRTKNVGVVDSEY  319 (372)
Q Consensus       248 ~~~~~~------C-~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWG-LDf~w~~caqg~~~~kiGVVDa~~  319 (372)
                      ..+..+      . ......+.-..++=..+=+|+|++++.+= . ++.....|| =|+-+..-+. ..+.++..++...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~iG-g-fde~~~~~g~ED~dl~~Rl~-~~G~~i~~~p~~~  326 (625)
T 2z86_A          250 NKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAG-W-FDEEFTHWGGEDNEFGYRLY-REGCYFRSVEGAM  326 (625)
T ss_dssp             --CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHHHC-C-CCTTCSSCCCHHHHHHHHHH-HTTCEEEECGGGC
T ss_pred             CCccccchhhhcccccccccCCceeEEeeceeeeEHHHHHHhC-C-CccccccCCcchhhhhhhHH-hCCceEEEcccch
Confidence            000000      0 00000011122333445579999999873 2 455556664 6666653332 1357999999999


Q ss_pred             EEEecccc
Q 017407          320 IVHLGLPT  327 (372)
Q Consensus       320 VvH~g~Pt  327 (372)
                      +.|...+.
T Consensus       327 v~H~~~~~  334 (625)
T 2z86_A          327 AYHQEPPG  334 (625)
T ss_dssp             EEEECCC-
T ss_pred             hhccCCcc
Confidence            99995443


No 5  
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=64.04  E-value=20  Score=35.99  Aligned_cols=212  Identities=10%  Similarity=0.020  Sum_probs=102.1

Q ss_pred             CCCcEEEEEecCcc----ccchhHHhhcCCCCCc--EEEEEEecCccCcc-cc-cc-ccc--ceeEEEeecccchhhhcc
Q 017407          107 PPMNLLAIAAGIKQ----KKIVDQIVRKFPSKDF--VVMLFHYDGVVDEW-KD-LV-WAD--RAIHVSAANQTKWWFAKR  175 (372)
Q Consensus       107 ~~k~Lla~~VG~kq----k~~Vd~~v~kf~~~nF--dvmLFhYDg~vd~w-~d-~e-ws~--~aiHvsa~kqtKWwfakR  175 (372)
                      .++.-|++|+=...    ...++++++.- ..++  .|++. =||+.|+- .+ ++ +..  .-|++....... =++.-
T Consensus       111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt-~~~~~~EIIVV-DDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~~A  187 (570)
T 2d7i_A          111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRS-PPELVAEIVLV-DDFSDREHLKKPLEDYMALFPSVRILRTKKRE-GLIRT  187 (570)
T ss_dssp             CCCEEEEEEESSCCHHHHHHHHHHHHHHS-CGGGEEEEEEE-ECSCCCGGGTHHHHHHHTTSTTEEEEECSSCC-CHHHH
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHhcC-CccCcEEEEEE-ECCCCcHHHHHHHHHHHHhCCeEEEEECCCCC-CHHHH
Confidence            45677778875443    22345555442 2343  55554 47776654 21 11 111  124443221111 01111


Q ss_pred             ccChhhhccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCCCC---CCCCceeeccc----cccc-Ccccceeeec
Q 017407          176 FLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD---PVKSEVHHPIT----ARRR-NSKAHRRMYK  247 (372)
Q Consensus       176 fLHPdiv~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd---~~s~~i~h~iT----~R~~-~~~vHrr~~~  247 (372)
                      ...-=-.+.-|||++.|+|..++..-++++++.+++..-.+..|.++   .+.  +.+...    .+.. ...++...+.
T Consensus       188 ~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  265 (570)
T 2d7i_A          188 RMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDD--FRYETQAGDAMRGAFDWEMYYKRIP  265 (570)
T ss_dssp             HHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEEEEEEEECTTT--CCEECCTTSSCEEEECTTCCEEEEC
T ss_pred             HHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEeeeeeccCCCc--hhhccccCCcccccccccccccccc
Confidence            11111136789999999999999999999999998765444445432   111  111110    0000 0000000000


Q ss_pred             ccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccc-hhhhhhhhhhcCCCCCcEEEEeeeeEEEeccc
Q 017407          248 YKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAW-GLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLP  326 (372)
Q Consensus       248 ~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGW-GLDf~w~~caqg~~~~kiGVVDa~~VvH~g~P  326 (372)
                      ......- .....|.-+.++-.-+=+|+|++|+.+=  -+++....| |=|+-+..-+. ..+.+|.++....|.|..+.
T Consensus       266 ~~~~~~~-~~~~~~~~~~~~~g~~~~irr~~~~~iG--gfDe~~~~~g~ED~dl~~Rl~-~~G~~i~~~p~~~v~H~~r~  341 (570)
T 2d7i_A          266 IPPELQK-ADPSDPFESPVMAGGLFAVDRKWFWELG--GYDPGLEIWGGEQYEISFKVW-MCGGRMEDIPCSRVGHIYRK  341 (570)
T ss_dssp             CCTTTCC-SSTTSCEECSSCCSSSEEEEHHHHHHTT--SSCTTCCSSSSHHHHHHHHHH-HTTCEEEEEEEEEEEECCCS
T ss_pred             cchhhhc-cCCCcceecccccceEEEEEHHHHHhcC--CCCCcccccCcchHHHHHHHH-hCCCeEEEccCeEEEEEccc
Confidence            0000000 0001111112222223468999999873  245666677 44555543322 13579999999999997554


Q ss_pred             c
Q 017407          327 T  327 (372)
Q Consensus       327 t  327 (372)
                      .
T Consensus       342 ~  342 (570)
T 2d7i_A          342 Y  342 (570)
T ss_dssp             S
T ss_pred             c
Confidence            4


No 6  
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=59.84  E-value=6.3  Score=33.30  Aligned_cols=109  Identities=17%  Similarity=0.083  Sum_probs=60.3

Q ss_pred             CCCcEEEEEecCccccchhHHhhcC---CCCCcEEEEEEecCccCccccc--ccc--cceeEEEe-ecccchhhhccccC
Q 017407          107 PPMNLLAIAAGIKQKKIVDQIVRKF---PSKDFVVMLFHYDGVVDEWKDL--VWA--DRAIHVSA-ANQTKWWFAKRFLH  178 (372)
Q Consensus       107 ~~k~Lla~~VG~kqk~~Vd~~v~kf---~~~nFdvmLFhYDg~vd~w~d~--ews--~~aiHvsa-~kqtKWwfakRfLH  178 (372)
                      .++.-|++|+= +..+.+.+.++..   ...+|.|++. =||..|+=.++  ++.  ..-+++.. .+..+ - ..|.. 
T Consensus         4 ~p~vsViIp~y-n~~~~l~~~l~Sl~~q~~~~~eiIvv-Dd~S~d~t~~~~~~~~~~~~~i~~i~~~n~G~-~-~a~N~-   78 (240)
T 3bcv_A            4 IPKVSVIVPIY-NVEKYLDQCVQALLAQTLSDIEIILI-DDESPDNCPKICDDYAAQYPNIKVIHKKNAGL-G-MACNS-   78 (240)
T ss_dssp             CCSEEEEEEES-SCTTTHHHHHHHHHTCSSSSEEEEEE-ECCCSSSHHHHHHHHHHHCSSEEEEECCCCCH-H-HHHHH-
T ss_pred             CCcEEEEEecC-CCHHHHHHHHHHHHhCcCCCeEEEEE-ECCCCcCHHHHHHHHHhhCCCEEEEECCCCCh-H-HHHHH-
Confidence            34566777763 3344554444432   1246777665 47776652211  111  01123221 12221 1 11110 


Q ss_pred             hhhhccccEEEEeccccccCCCCHHHHHHHHHHhCCcccCCC
Q 017407          179 PDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA  220 (372)
Q Consensus       179 Pdiv~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA  220 (372)
                      -=-.+..|||++.|+|..++...++++++.+++.+.++...+
T Consensus        79 g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~  120 (240)
T 3bcv_A           79 GLDVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTG  120 (240)
T ss_dssp             HHHHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC-
T ss_pred             HHHHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEe
Confidence            111367899999999999999999999999998777766544


No 7  
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=56.24  E-value=18  Score=37.54  Aligned_cols=130  Identities=10%  Similarity=0.090  Sum_probs=67.2

Q ss_pred             cCCCcce-ecCCCCCCCCCCCCCCCcEEEEEecCccccchhHHhhcCCCC-----CcEEEEEEecCccCc--ccc-ccc-
Q 017407           86 KTSNLEM-RPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSK-----DFVVMLFHYDGVVDE--WKD-LVW-  155 (372)
Q Consensus        86 ~~sd~~l-r~Lwg~p~~~~~~~~~k~Lla~~VG~kqk~~Vd~~v~kf~~~-----nFdvmLFhYDg~vd~--w~d-~ew-  155 (372)
                      ..++-.+ .--|..|...  +..++.-|++++ ++..+.+.+.++.....     ..+=+++-=||+.|.  -.+ .+. 
T Consensus       159 a~~~~~i~~~~w~~~~~~--~~~pkVSVVIpt-YN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~  235 (657)
T 4fix_A          159 TDTAVTLHSGGWYATSPA--PGTANIAVGIPT-FNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAA  235 (657)
T ss_dssp             ESSCEEEEEEEEECSSCC--CSCCCEEEECCB-SSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHH
T ss_pred             ecCCCeEEeeEEeCCCCC--CCCCeEEEEEEe-cCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHH
Confidence            3444344 3456554432  234565555554 45555666666654331     333455555777652  111 111 


Q ss_pred             --ccceeEEEeecccchhhhccccC--hhhhc--cccEEEEeccccccCCCCHHHHHHHHHHh-CCcccCCC
Q 017407          156 --ADRAIHVSAANQTKWWFAKRFLH--PDIVA--EYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPA  220 (372)
Q Consensus       156 --s~~aiHvsa~kqtKWwfakRfLH--Pdiv~--~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPA  220 (372)
                        ...-|++... . .-=++.-+-.  -....  .+|||++.|+|..++...++++++.+++. ...+.+|.
T Consensus       236 ~~~~~~I~vI~~-~-N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~  305 (657)
T 4fix_A          236 ARLGSRLSIHDQ-P-NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQ  305 (657)
T ss_dssp             HHHGGGEEEEEC-C-CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEE
T ss_pred             HhcCCCEEEEEC-C-CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeE
Confidence              0112333221 1 2112221110  01111  69999999999999999999999999876 34455553


No 8  
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=55.93  E-value=15  Score=35.69  Aligned_cols=200  Identities=10%  Similarity=-0.002  Sum_probs=100.9

Q ss_pred             CCCcEEEEEecCccccchhHHhhcCC------CCCcEEEEEEecCccCccccc--ccccceeEEE------eecccchhh
Q 017407          107 PPMNLLAIAAGIKQKKIVDQIVRKFP------SKDFVVMLFHYDGVVDEWKDL--VWADRAIHVS------AANQTKWWF  172 (372)
Q Consensus       107 ~~k~Lla~~VG~kqk~~Vd~~v~kf~------~~nFdvmLFhYDg~vd~w~d~--ews~~aiHvs------a~kqtKWwf  172 (372)
                      .++..|++|+=+ +.+++..+++...      ..+|.|++. =||+.|+=.++  ++..+.++..      ..++.|-.=
T Consensus        93 ~p~vSVVIP~yN-e~~~l~~~l~sl~~~l~~~~~~~EIIVV-DDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A  170 (387)
T 3f1y_A           93 GLTVSAVLPSRN-VADTVGGIIDEIHALNERAPLIDQILVV-DADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDA  170 (387)
T ss_dssp             TCCEEEEEEESS-CTTTHHHHHHHHHHHHHHSCCCSEEEEE-ECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHH
T ss_pred             CCeEEEEEEcCC-CHHHHHHHHHHHHHHHhcCCCCeEEEEE-cCcCCccHHHHHHHhCchhcccceeEecCCccCCHHHH
Confidence            467788888854 4556665555432      246776655 48887764432  1112222200      012222110


Q ss_pred             hccccChhhhccccEEEEeccccc-cCCCCHHHHHHHHHHh-CCcccCCCCCCCCCceeecccccccCcccce----eee
Q 017407          173 AKRFLHPDIVAEYNYIFLWDEDIG-VENFNPRRYLSIVKDE-GLEISQPALDPVKSEVHHPITARRRNSKAHR----RMY  246 (372)
Q Consensus       173 akRfLHPdiv~~YDYIFLwDDDL~-vd~f~i~ry~~Ivr~~-gLeISQPALd~~s~~i~h~iT~R~~~~~vHr----r~~  246 (372)
                      .+.=+   -.+.+|||++.|.|.. ++...+.++++.+.+. +.++.......... ...... +.....+-+    ..+
T Consensus       171 ~n~G~---~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~~~~~~-~~~~~~-~~~~g~v~~~~~~~l~  245 (387)
T 3f1y_A          171 MWRAL---SVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYRRPFR-KGESIE-EDGGGRVTELTAKPLF  245 (387)
T ss_dssp             HHHHT---TTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEEECC--------C-CBCCSHHHHHTHHHHH
T ss_pred             HHHHH---HhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEeeccccc-cccccc-cccCCchhhhhHHHHH
Confidence            00000   1268999999999999 8999999999988765 56665554321100 000000 000000000    000


Q ss_pred             cccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhh-hhcCCCCCcEEEEeeeeEEEecc
Q 017407          247 KYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGY-CAQGDRTKNVGVVDSEYIVHLGL  325 (372)
Q Consensus       247 ~~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~-caqg~~~~kiGVVDa~~VvH~g~  325 (372)
                      +.--+.-+  ... -+.+||.     +|+|++++.+ .+     ..|||.|..+-. ++.-..-++|.=|+-.+..|...
T Consensus       246 ~~~~~~l~--~~~-d~~sG~~-----a~rR~~l~~i-~f-----~~gyg~e~ell~~~~~~~G~~~I~eVpi~~~~h~~~  311 (387)
T 3f1y_A          246 NLFYPELA--GFV-QPLAGEF-----VADRELFCSI-PF-----LTGYAVETGIMIDVLKKVGLGAMAQVDLGERQNRHQ  311 (387)
T ss_dssp             HHHCGGGT--TCS-CTTCSCE-----EEEHHHHTTS-CE-----ECSTTHHHHHHHHHHHHHCGGGEEEEEEEECCCCCC
T ss_pred             HHHhHhhc--ccc-ccccccE-----EEEHHHHHhC-CC-----CCCcchHHHHHHHHHHhcCCCeEEEEecceeecCCC
Confidence            00000000  001 1334442     5899999876 22     378998887743 32211123588899888888755


Q ss_pred             cc
Q 017407          326 PT  327 (372)
Q Consensus       326 Pt  327 (372)
                      ++
T Consensus       312 ~~  313 (387)
T 3f1y_A          312 HL  313 (387)
T ss_dssp             CH
T ss_pred             CH
Confidence            54


No 9  
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=29.42  E-value=19  Score=33.32  Aligned_cols=31  Identities=23%  Similarity=0.478  Sum_probs=24.7

Q ss_pred             ccccEEEEeccc---cccCCCCHHHHHHHHHHhCCccc
Q 017407          183 AEYNYIFLWDED---IGVENFNPRRYLSIVKDEGLEIS  217 (372)
Q Consensus       183 ~~YDYIFLwDDD---L~vd~f~i~ry~~Ivr~~gLeIS  217 (372)
                      .+|||+++.|-|   ++.+..++-|++    +.|-+|.
T Consensus        52 ~~~dhllfIDAD~~~I~FdPe~V~rLl----~~g~DVV   85 (203)
T 2c0n_A           52 KDYDTLAFLDEDVVPIEIDFQKVEAKF----NEGYDVV   85 (203)
T ss_dssp             TTCCEEEEECTTEEEEECCHHHHHHHH----HHTCSEE
T ss_pred             CCCCEEEEEeCCCCccccCHHHHHHHH----hCCCCEE
Confidence            469999999999   988888888877    5565554


No 10 
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=29.35  E-value=32  Score=33.77  Aligned_cols=182  Identities=11%  Similarity=0.072  Sum_probs=95.9

Q ss_pred             cEEEEEecCccccchhHHhhcCC----CCCcEEEEEEecCccCccccc-c-----c----ccceeEEEee-----cccc-
Q 017407          110 NLLAIAAGIKQKKIVDQIVRKFP----SKDFVVMLFHYDGVVDEWKDL-V-----W----ADRAIHVSAA-----NQTK-  169 (372)
Q Consensus       110 ~Lla~~VG~kqk~~Vd~~v~kf~----~~nFdvmLFhYDg~vd~w~d~-e-----w----s~~aiHvsa~-----kqtK-  169 (372)
                      ++|++|+  +. +++..+++...    ..++.|++ -=||++|+=.+. +     .    ..+.+.....     +..| 
T Consensus         2 slVIiP~--~e-E~I~~vl~~l~~~~~~~~~EIIV-VDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG   77 (397)
T 2bo4_A            2 SLVVFPF--KH-EHPEVLLHNVRVAAAHPRVHEVL-CIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKG   77 (397)
T ss_dssp             CEEEEEC--CS-SCHHHHHHHHHHHHHSTTCCEEE-EEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHH
T ss_pred             cEEEEeC--Cc-cCHHHHHHHHHHhccCCCeEEEE-EECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHH
Confidence            5788887  22 46777766431    24677644 458888864332 1     1    1123333222     4455 


Q ss_pred             ---hhhhccccChhhhccccEEEEeccccc-cCCCCHHHHHHHHHHhCCcccCCCCCCC--CCceeecccccccCcccce
Q 017407          170 ---WWFAKRFLHPDIVAEYNYIFLWDEDIG-VENFNPRRYLSIVKDEGLEISQPALDPV--KSEVHHPITARRRNSKAHR  243 (372)
Q Consensus       170 ---WwfakRfLHPdiv~~YDYIFLwDDDL~-vd~f~i~ry~~Ivr~~gLeISQPALd~~--s~~i~h~iT~R~~~~~vHr  243 (372)
                         +--++.-+   -.+.+|||.+.|-|+. .+...+.++++-+++ |.++..+.....  .+.+.+.+ .|.    +-+
T Consensus        78 ~Al~~G~~~Al---~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~~-g~D~V~g~~~r~~~~~~~~~~~-~~~----ll~  148 (397)
T 2bo4_A           78 DGMNTALRYFL---EETQWERIHFYDADITSFGPDWITKAEEAADF-GYGLVRHYFPRASTDAMITWMI-TRT----GFA  148 (397)
T ss_dssp             HHHHHHHHHHH---HHCCCSEEEECCTTCSSCCHHHHHHHHHHHHT-TCSEEEEECCCCTTSCHHHHHT-HHH----HHH
T ss_pred             HHHHHHHHHHH---HhCCCCEEEEEcCCCCCCCHHHHHHHHHHHHc-CCCEEEEEeccccCCcHHHHHH-HHH----HHH
Confidence               11110000   1378999999999996 799999999987754 666665542211  11111111 010    000


Q ss_pred             eeecccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhh-hcCCCcccchhhhhhhhhhcCCCCCcEEEEe
Q 017407          244 RMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYM-IQNDLIHAWGLDIQLGYCAQGDRTKNVGVVD  316 (372)
Q Consensus       244 r~~~~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~Awrcvwhm-iqNDLvhGWGLDf~w~~caqg~~~~kiGVVD  316 (372)
                      ..|+.   ..|. ..+.| -+||.     +|+|++++.+... +.. ..+|||.|..+...+.. .+.+|.-|.
T Consensus       149 ~~~~~---~~~~-~i~dp-~sG~~-----a~~R~vl~~l~~~~~~~-~~~~fg~eiel~~~a~~-~G~rI~EVp  210 (397)
T 2bo4_A          149 LLWPH---TELS-WIEQP-LGGEL-----LMRREVAAMLYEDERVR-RRSDWGIDTLYTFVTVQ-QGVSIYECY  210 (397)
T ss_dssp             HHCTT---SSGG-GCSCT-TCCCE-----EEEHHHHHHHHHCHHHH-TCCSTTHHHHHHHHHHH-TTCCEEEEE
T ss_pred             HHHHH---hhcc-ccccC-CcccE-----EEeHHHHHHHhhhcccC-cCCCcchHHHHHHHHHH-cCCEEEEEE
Confidence            01110   1111 11222 34555     5999999876421 112 56899999988765542 356777665


No 11 
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=27.21  E-value=84  Score=31.15  Aligned_cols=108  Identities=18%  Similarity=0.081  Sum_probs=56.4

Q ss_pred             CCCcEEEEEecCccccchhHHhhcC---CCCCcEEEEEEecCccCcccc-c-cc--ccceeEEE-eecccchhhhccccC
Q 017407          107 PPMNLLAIAAGIKQKKIVDQIVRKF---PSKDFVVMLFHYDGVVDEWKD-L-VW--ADRAIHVS-AANQTKWWFAKRFLH  178 (372)
Q Consensus       107 ~~k~Lla~~VG~kqk~~Vd~~v~kf---~~~nFdvmLFhYDg~vd~w~d-~-ew--s~~aiHvs-a~kqtKWwfakRfLH  178 (372)
                      .++.-+++++ ++....+.+.++..   .-.+|.|++.- ||..|+=.+ + ++  ...-+++. ..+..+   +.-+-.
T Consensus       374 ~~~vsiii~~-yn~~~~l~~~l~s~~~q~~~~~eiivvd-d~S~d~t~~~~~~~~~~~~~i~~~~~~n~G~---~~a~n~  448 (625)
T 2z86_A          374 VPLVSIYIPA-YNCSKYIVRCVESALNQTITDLEVCICD-DGSTDDTLRILQEHYANHPRVRFISQKNKGI---GSASNT  448 (625)
T ss_dssp             SCSEEEEEEE-SSCTTTHHHHHHHHHSSSCCSEEEEEEE-ESCSSSHHHHHHHHHTTCTTEEEEEECCCCH---HHHHHH
T ss_pred             CCeEEEEEeC-CCCHHHHHHHHHHHHhCcCCCeEEEEEE-CcCChhHHHHHHHHHhhCCcEEEEeCCCCCH---HHHHHH
Confidence            3455666666 34455555554432   12577777664 566664211 1 11  01123332 222222   111111


Q ss_pred             hhhhccccEEEEeccccccCCCCHHHHHHHHHH-hCCcccCC
Q 017407          179 PDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKD-EGLEISQP  219 (372)
Q Consensus       179 Pdiv~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~-~gLeISQP  219 (372)
                      -=-.+..|||++.|+|..++...++++++.+.+ .+..+..+
T Consensus       449 g~~~a~g~~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~  490 (625)
T 2z86_A          449 AVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYT  490 (625)
T ss_dssp             HHHHCCSSEEEECCTTCEECTTHHHHHHHHHHHCTTCSEEEE
T ss_pred             HHHhcCCCEEEEECCCcccChhHHHHHHHHHHhCCCeeEEEe
Confidence            111367899999999999988888888877754 33444333


No 12 
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=25.67  E-value=33  Score=32.99  Aligned_cols=103  Identities=14%  Similarity=0.153  Sum_probs=60.8

Q ss_pred             CCcEEEEEecCccccchhHHhhcCCC-CCcEEEEEEecCccCccccccccc---ceeEEEeecccchhhhccccChhhhc
Q 017407          108 PMNLLAIAAGIKQKKIVDQIVRKFPS-KDFVVMLFHYDGVVDEWKDLVWAD---RAIHVSAANQTKWWFAKRFLHPDIVA  183 (372)
Q Consensus       108 ~k~Lla~~VG~kqk~~Vd~~v~kf~~-~nFdvmLFhYDg~vd~w~d~ews~---~aiHvsa~kqtKWwfakRfLHPdiv~  183 (372)
                      .++-+.|-+ ++......++|+.... ..-+=++....+.-..-.+..|..   .++.|....+.+==+-.||+ |.---
T Consensus        28 ~~FTvvi~t-y~R~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~~~~~vpv~v~~~~~nsLnnRF~-p~~~i  105 (293)
T 1omz_A           28 DSFTLIMQT-YNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQ-VFPEV  105 (293)
T ss_dssp             TCEEEEEEE-SSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGS-CCTTC
T ss_pred             CceEEEEEe-ecccHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhccccCCCCccEEEEeCCCCchhhccC-CCccC
Confidence            345555543 3455556666665432 344445555433321222333422   13444445554445678875 44445


Q ss_pred             cccEEEEeccccccCCCCHHHHHHHHHHh
Q 017407          184 EYNYIFLWDEDIGVENFNPRRYLSIVKDE  212 (372)
Q Consensus       184 ~YDYIFLwDDDL~vd~f~i~ry~~Ivr~~  212 (372)
                      +-|+||..|||+.+...+++.=|+.-+++
T Consensus       106 ~T~AVLslDDDv~l~~~el~faF~vWr~~  134 (293)
T 1omz_A          106 ETNAVLMVDDDTLISAQDLVFAFSIWQQF  134 (293)
T ss_dssp             CSSEEEEECTTEEECHHHHHHHHHHHTTS
T ss_pred             CcCEEEEEcCCCCCCHHHHHHHHHHHHHC
Confidence            68999999999999999999989888754


No 13 
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=22.15  E-value=66  Score=28.25  Aligned_cols=29  Identities=10%  Similarity=0.273  Sum_probs=26.6

Q ss_pred             ccccEEEEeccccccCCCCHHHHHHHHHH
Q 017407          183 AEYNYIFLWDEDIGVENFNPRRYLSIVKD  211 (372)
Q Consensus       183 ~~YDYIFLwDDDL~vd~f~i~ry~~Ivr~  211 (372)
                      +.-|||++.|.|..++.-.++++++.+++
T Consensus        73 A~g~yl~fln~D~~~~~~~l~~l~~~~~~  101 (249)
T 2nxv_A           73 CKGRYVIFCHEDVELVDRGYDDLVAAIEA  101 (249)
T ss_dssp             CCSSEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCcccCccHHHHHHHHHHh
Confidence            56899999999999999899999999887


Done!