Query 017408
Match_columns 372
No_of_seqs 179 out of 1255
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:18:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 4.6E-88 1E-92 658.7 21.3 310 36-355 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 5.4E-48 1.2E-52 359.8 24.3 252 33-347 43-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.1 2.3E-08 5E-13 98.9 20.9 247 50-353 26-329 (332)
4 PF03198 Glyco_hydro_72: Gluca 98.7 4.1E-07 8.9E-12 88.6 16.6 130 35-167 29-182 (314)
5 COG3867 Arabinogalactan endo-1 98.5 3.8E-06 8.1E-11 81.1 14.9 252 49-356 64-391 (403)
6 PRK10150 beta-D-glucuronidase; 98.2 0.00034 7.4E-09 74.7 23.1 257 36-353 295-585 (604)
7 PF00150 Cellulase: Cellulase 98.2 0.0006 1.3E-08 64.4 22.1 129 35-165 10-171 (281)
8 smart00633 Glyco_10 Glycosyl h 97.7 0.0064 1.4E-07 58.0 20.5 79 257-353 172-251 (254)
9 PF02836 Glyco_hydro_2_C: Glyc 97.0 0.089 1.9E-06 51.1 18.9 96 35-130 17-132 (298)
10 PF11790 Glyco_hydro_cc: Glyco 96.9 0.073 1.6E-06 50.4 17.4 193 83-349 39-232 (239)
11 PF00232 Glyco_hydro_1: Glycos 88.4 0.27 5.9E-06 50.9 2.2 284 51-351 61-441 (455)
12 cd02875 GH18_chitobiase Chitob 88.1 3 6.4E-05 42.0 9.3 96 61-159 55-151 (358)
13 PF02449 Glyco_hydro_42: Beta- 82.7 5.5 0.00012 40.0 8.3 83 50-132 12-140 (374)
14 PRK13511 6-phospho-beta-galact 79.0 3.5 7.6E-05 43.1 5.5 46 51-96 57-121 (469)
15 TIGR03356 BGL beta-galactosida 78.4 5.3 0.00011 41.2 6.6 77 265-348 335-414 (427)
16 cd00598 GH18_chitinase-like Th 75.4 9.8 0.00021 34.3 6.8 84 74-158 54-142 (210)
17 smart00481 POLIIIAc DNA polyme 72.6 13 0.00027 27.6 5.7 44 48-91 15-63 (67)
18 PRK09936 hypothetical protein; 72.5 34 0.00074 33.7 9.9 58 35-92 21-95 (296)
19 COG4782 Uncharacterized protei 71.1 13 0.00028 37.7 6.9 60 245-307 125-187 (377)
20 cd02874 GH18_CFLE_spore_hydrol 70.0 25 0.00054 34.2 8.7 84 71-158 47-138 (313)
21 PRK10340 ebgA cryptic beta-D-g 68.9 53 0.0012 37.8 12.1 97 36-132 337-452 (1021)
22 PLN02998 beta-glucosidase 65.9 9.8 0.00021 40.1 5.2 75 265-348 390-466 (497)
23 PLN02849 beta-glucosidase 65.1 10 0.00022 40.1 5.1 75 265-348 383-461 (503)
24 PRK09525 lacZ beta-D-galactosi 58.0 1.1E+02 0.0024 35.4 12.0 96 36-131 353-464 (1027)
25 PLN02814 beta-glucosidase 57.8 19 0.0004 38.1 5.5 46 51-96 80-144 (504)
26 PF05990 DUF900: Alpha/beta hy 57.3 42 0.00092 31.5 7.4 42 261-305 43-87 (233)
27 cd02876 GH18_SI-CLP Stabilin-1 57.3 75 0.0016 31.0 9.4 92 73-167 55-155 (318)
28 PF00925 GTP_cyclohydro2: GTP 54.6 17 0.00037 32.6 4.0 37 54-90 132-168 (169)
29 cd02872 GH18_chitolectin_chito 53.5 41 0.00089 33.4 7.0 75 81-156 69-150 (362)
30 cd06545 GH18_3CO4_chitinase Th 52.8 41 0.00089 31.7 6.6 81 73-158 50-133 (253)
31 PF00331 Glyco_hydro_10: Glyco 52.4 30 0.00064 34.2 5.7 222 73-352 63-312 (320)
32 TIGR01579 MiaB-like-C MiaB-lik 49.3 2.5E+02 0.0053 28.6 12.0 142 46-217 165-331 (414)
33 PF01229 Glyco_hydro_39: Glyco 48.4 3.3E+02 0.0072 28.4 13.0 184 123-351 158-351 (486)
34 cd04734 OYE_like_3_FMN Old yel 48.2 2.9E+02 0.0063 27.5 14.7 131 175-310 62-207 (343)
35 cd02873 GH18_IDGF The IDGF's ( 47.2 95 0.0021 31.8 8.6 20 139-158 168-187 (413)
36 TIGR00505 ribA GTP cyclohydrol 46.8 30 0.00066 31.6 4.4 33 54-86 131-163 (191)
37 PRK00393 ribA GTP cyclohydrola 46.6 30 0.00066 31.8 4.4 33 54-86 134-166 (197)
38 PRK09589 celA 6-phospho-beta-g 46.3 55 0.0012 34.3 6.8 45 51-95 70-134 (476)
39 smart00636 Glyco_18 Glycosyl h 45.6 71 0.0015 31.1 7.2 80 75-156 57-142 (334)
40 KOG0626 Beta-glucosidase, lact 45.3 56 0.0012 34.7 6.5 75 263-345 403-485 (524)
41 cd04743 NPD_PKS 2-Nitropropane 42.9 1.6E+02 0.0034 29.5 9.0 79 34-130 56-134 (320)
42 PRK09593 arb 6-phospho-beta-gl 41.7 54 0.0012 34.4 5.9 46 51-96 76-141 (478)
43 PRK09852 cryptic 6-phospho-bet 40.9 55 0.0012 34.3 5.8 46 51-96 74-139 (474)
44 PF14488 DUF4434: Domain of un 40.8 2.6E+02 0.0057 24.9 10.3 99 52-156 24-151 (166)
45 PF01055 Glyco_hydro_31: Glyco 39.6 2.2E+02 0.0047 29.1 9.9 135 139-329 42-182 (441)
46 PF02055 Glyco_hydro_30: O-Gly 38.4 5.1E+02 0.011 27.4 13.7 65 106-170 208-283 (496)
47 PRK15014 6-phospho-beta-glucos 37.3 68 0.0015 33.7 5.8 75 267-348 368-448 (477)
48 TIGR03632 bact_S11 30S ribosom 37.3 77 0.0017 26.4 5.1 37 51-87 50-91 (108)
49 PF04909 Amidohydro_2: Amidohy 36.9 79 0.0017 29.0 5.7 52 144-210 85-137 (273)
50 PRK12485 bifunctional 3,4-dihy 36.8 42 0.00091 34.1 4.0 32 54-86 331-362 (369)
51 PF07172 GRP: Glycine rich pro 35.9 38 0.00082 27.7 2.9 8 1-9 1-8 (95)
52 cd00641 GTP_cyclohydro2 GTP cy 35.7 56 0.0012 29.9 4.4 33 54-86 133-165 (193)
53 cd06418 GH25_BacA-like BacA is 35.4 3.7E+02 0.008 25.0 12.1 107 48-159 21-143 (212)
54 PRK14019 bifunctional 3,4-dihy 34.9 47 0.001 33.8 4.0 35 54-89 328-362 (367)
55 cd02932 OYE_YqiM_FMN Old yello 34.6 4.6E+02 0.0099 25.8 14.0 131 176-309 63-219 (336)
56 KOG1412 Aspartate aminotransfe 34.1 1.1E+02 0.0023 30.8 6.2 53 139-202 318-371 (410)
57 PRK13586 1-(5-phosphoribosyl)- 33.8 2.7E+02 0.0058 26.2 8.8 70 48-133 30-108 (232)
58 PRK13587 1-(5-phosphoribosyl)- 33.7 2.8E+02 0.0061 26.0 8.9 70 48-133 31-111 (234)
59 PRK14328 (dimethylallyl)adenos 33.4 5E+02 0.011 26.7 11.4 60 138-216 280-339 (439)
60 KOG0078 GTP-binding protein SE 33.2 1.2E+02 0.0025 28.5 5.9 87 29-132 38-129 (207)
61 PF14871 GHL6: Hypothetical gl 33.1 1E+02 0.0023 26.5 5.4 43 49-91 1-66 (132)
62 PRK14334 (dimethylallyl)adenos 32.9 3.2E+02 0.007 28.1 9.9 139 47-215 166-328 (440)
63 TIGR01233 lacG 6-phospho-beta- 31.9 1E+02 0.0022 32.2 6.1 46 51-96 56-120 (467)
64 PF14606 Lipase_GDSL_3: GDSL-l 31.9 2.5E+02 0.0055 25.6 7.9 58 245-309 76-135 (178)
65 PF00977 His_biosynth: Histidi 31.4 1.6E+02 0.0034 27.5 6.8 70 48-133 29-108 (229)
66 COG1433 Uncharacterized conser 31.1 1E+02 0.0022 26.4 4.8 39 52-90 56-94 (121)
67 PF12876 Cellulase-like: Sugar 30.8 71 0.0015 25.1 3.7 48 118-167 8-63 (88)
68 PRK09318 bifunctional 3,4-dihy 30.2 71 0.0015 32.7 4.4 37 54-90 320-356 (387)
69 PRK09314 bifunctional 3,4-dihy 30.0 68 0.0015 32.3 4.2 34 53-86 300-334 (339)
70 TIGR00612 ispG_gcpE 1-hydroxy- 30.0 5.4E+02 0.012 26.0 10.4 74 60-166 92-172 (346)
71 PRK08815 GTP cyclohydrolase; P 29.9 71 0.0015 32.6 4.4 37 54-90 305-341 (375)
72 COG4213 XylF ABC-type xylose t 29.9 81 0.0018 31.5 4.6 75 73-167 176-250 (341)
73 PRK09989 hypothetical protein; 29.9 4.6E+02 0.01 24.4 11.0 51 36-87 4-58 (258)
74 PRK14024 phosphoribosyl isomer 29.5 3.4E+02 0.0073 25.5 8.7 69 49-133 33-110 (241)
75 PRK09311 bifunctional 3,4-dihy 29.4 74 0.0016 32.7 4.4 33 54-86 339-371 (402)
76 PF13721 SecD-TM1: SecD export 29.2 2.2E+02 0.0048 23.3 6.4 33 36-68 34-66 (101)
77 PRK14114 1-(5-phosphoribosyl)- 29.1 3.2E+02 0.0069 25.9 8.4 70 48-133 30-108 (241)
78 COG2159 Predicted metal-depend 28.7 2.6E+02 0.0057 27.2 8.0 94 145-282 114-209 (293)
79 cd01543 PBP1_XylR Ligand-bindi 28.7 3.8E+02 0.0083 24.4 8.9 128 51-199 98-238 (265)
80 PRK06552 keto-hydroxyglutarate 28.4 4.9E+02 0.011 24.2 10.3 88 49-154 118-210 (213)
81 PLN02831 Bifunctional GTP cycl 28.4 77 0.0017 33.1 4.4 37 54-90 373-409 (450)
82 PF10916 DUF2712: Protein of u 28.4 77 0.0017 27.9 3.7 24 1-24 1-24 (146)
83 PRK09319 bifunctional 3,4-dihy 28.0 79 0.0017 33.9 4.4 37 54-90 343-379 (555)
84 PRK14330 (dimethylallyl)adenos 27.7 6.8E+02 0.015 25.6 11.6 77 121-216 250-332 (434)
85 PF02811 PHP: PHP domain; Int 27.5 1.2E+02 0.0026 25.9 4.9 45 47-91 15-64 (175)
86 TIGR03628 arch_S11P archaeal r 27.3 1.2E+02 0.0025 25.8 4.5 37 51-87 53-102 (114)
87 PF06117 DUF957: Enterobacteri 27.3 1.1E+02 0.0023 23.3 3.7 41 103-155 12-54 (65)
88 PF14587 Glyco_hydr_30_2: O-Gl 27.0 6.6E+02 0.014 25.8 10.6 95 73-169 108-227 (384)
89 PRK09607 rps11p 30S ribosomal 27.0 1.4E+02 0.003 26.0 5.0 37 51-87 60-109 (132)
90 CHL00041 rps11 ribosomal prote 26.5 1.5E+02 0.0033 25.0 5.1 35 52-86 64-103 (116)
91 cd02803 OYE_like_FMN_family Ol 26.3 6E+02 0.013 24.6 12.9 131 174-309 61-206 (327)
92 PRK14336 (dimethylallyl)adenos 25.8 6.6E+02 0.014 25.7 10.7 60 138-216 257-316 (418)
93 COG2113 ProX ABC-type proline/ 25.6 2.2E+02 0.0048 28.1 6.9 38 55-93 52-90 (302)
94 PF00411 Ribosomal_S11: Riboso 24.8 1.3E+02 0.0027 25.1 4.3 36 52-87 51-91 (110)
95 PRK14338 (dimethylallyl)adenos 24.7 8E+02 0.017 25.4 11.5 139 47-215 183-346 (459)
96 PRK05309 30S ribosomal protein 24.6 1.7E+02 0.0037 25.2 5.2 36 51-86 67-107 (128)
97 PF08002 DUF1697: Protein of u 23.9 56 0.0012 28.3 2.1 31 37-69 10-40 (137)
98 PF03662 Glyco_hydro_79n: Glyc 23.4 7.5E+02 0.016 24.7 10.2 82 74-155 114-202 (319)
99 COG5016 Pyruvate/oxaloacetate 23.2 98 0.0021 32.0 3.9 40 51-90 97-146 (472)
100 cd06598 GH31_transferase_CtsZ 23.1 7.1E+02 0.015 24.3 12.2 27 189-215 69-95 (317)
101 KOG2803 Choline phosphate cyti 22.9 91 0.002 31.1 3.5 95 63-157 7-129 (358)
102 cd06592 GH31_glucosidase_KIAA1 22.3 3.8E+02 0.0082 26.1 7.8 36 180-215 58-95 (303)
103 cd04723 HisA_HisF Phosphoribos 21.7 4.6E+02 0.01 24.4 8.0 69 49-133 36-113 (233)
104 COG0621 MiaB 2-methylthioadeni 21.5 6.7E+02 0.015 26.2 9.7 59 139-216 279-337 (437)
105 PF08924 DUF1906: Domain of un 21.4 2.5E+02 0.0054 24.2 5.7 102 53-158 9-130 (136)
106 PRK03941 NTPase; Reviewed 21.1 6.3E+02 0.014 22.9 8.7 61 83-155 1-61 (174)
107 PRK12581 oxaloacetate decarbox 20.8 1.4E+02 0.0031 31.4 4.6 37 54-90 111-153 (468)
108 COG2730 BglC Endoglucanase [Ca 20.4 7.6E+02 0.017 25.1 9.9 104 51-156 76-218 (407)
109 cd00854 NagA N-acetylglucosami 20.4 1.5E+02 0.0032 29.7 4.7 44 47-91 145-194 (374)
110 PRK13585 1-(5-phosphoribosyl)- 20.4 6.1E+02 0.013 23.3 8.6 70 48-133 32-111 (241)
111 COG5014 Predicted Fe-S oxidore 20.1 76 0.0017 29.2 2.2 27 47-73 73-103 (228)
112 PRK14042 pyruvate carboxylase 20.1 1.4E+02 0.003 32.4 4.5 41 50-90 94-144 (596)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=4.6e-88 Score=658.67 Aligned_cols=310 Identities=48% Similarity=0.886 Sum_probs=255.9
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCeEEEecCChhHHHHhhcCCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhc
Q 017408 36 YGINYGRIADNIPSPDEVAVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNF 115 (372)
Q Consensus 36 ~GvnYg~~~~n~ps~~~v~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~ 115 (372)
+|||||+.++|+|+|.++++++|+++|++||||++|+++|+|++++||+|++||+|++++++++++..|..|++++|.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCcccccccchhhhHHH
Q 017408 116 LPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPL 195 (372)
Q Consensus 116 ~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ 195 (372)
+|+++|++|+||||++..... ..|+|+|+++|++|++.||+++|||+|+++++++..+||||.|.|+.++.+.|.++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~---~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN---AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG---GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccc---eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHH
Confidence 999999999999999986432 28999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHhhcCCCceeccCccccccCCCCccccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHhCCCCCcceEeee
Q 017408 196 LDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTET 275 (372)
Q Consensus 196 ldfl~~~~sp~~vNiyPyf~~~~~~~~i~~~~Alf~~~~~~~d~~~~~~y~nlfda~vDav~~a~~~~g~~~~~vvItET 275 (372)
++||..++||||+|+||||++.++|+.+++|||+|+++.+++|+ +++|+||||+|+|++++||+++|+++++|+||||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 99999999999999999999999999999999999998877755 7899999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeEEEEEeccCCCCCCCCCCCceeeecCCCCeeEeeee
Q 017408 276 GWASRGDSNEAAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNENQKPGPTSERNFGLFKPDGSIAYDIGF 355 (372)
Q Consensus 276 GWPS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe~wK~g~~~E~~wGlf~~d~~~ky~l~~ 355 (372)
||||+|+ .+|+.+||+.|++++++++. .|||+||+..+++||||||||+||+|+++|||||||++||+|||+|+|
T Consensus 236 GWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999999 68999999999999999984 899999999999999999999999987799999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-48 Score=359.80 Aligned_cols=252 Identities=24% Similarity=0.327 Sum_probs=202.6
Q ss_pred CCceeEEecCCCCC--CCCHHHHHHHHHh-CCC-CeEEEecCCh----hHHHHhhcCCCEEEEeccCCcchhhccCHHHH
Q 017408 33 TGTYGINYGRIADN--IPSPDEVAVLLRA-SKI-KNVRIYDADH----SVLKAFSGTGLELVVGLPNGLVKEMSANESHA 104 (372)
Q Consensus 33 ~~~~GvnYg~~~~n--~ps~~~v~~~lk~-~~~-~~VRiY~~d~----~vL~A~~~~gi~v~lGv~~~~~~~~a~~~~~a 104 (372)
.+..+||||++.++ ||+.+|+..+|.. ..+ ..||+|.+|| +|++|+...|+||.||||..+. +..+.+
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd--~~~~~~-- 118 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDD--IHDAVE-- 118 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccc--hhhhHH--
Confidence 56789999999876 8999999866544 233 3999998665 5889999999999999998542 221222
Q ss_pred HHHHHHhhhhcCCCccEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCcccc
Q 017408 105 MDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIF 184 (372)
Q Consensus 105 ~~wv~~~i~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F 184 (372)
+-+...+.+++..+.|++|+||||+|+|++. .+++|+.+|..+|.+|+.+|++ +||+|+++|.++.+
T Consensus 119 -~til~ay~~~~~~d~v~~v~VGnEal~r~~~-tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~--------- 185 (305)
T COG5309 119 -KTILSAYLPYNGWDDVTTVTVGNEALNRNDL-TASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN--------- 185 (305)
T ss_pred -HHHHHHHhccCCCCceEEEEechhhhhcCCC-CHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC---------
Confidence 2355667888888889999999999999774 4999999999999999999997 56999999988875
Q ss_pred cccchhhhHHHHHHHhhcCCCceeccCccccccCCCCccccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHhC
Q 017408 185 KEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDAG 264 (372)
Q Consensus 185 ~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~~~~~~~i~~~~Alf~~~~~~~d~~~~~~y~nlfda~vDav~~a~~~~g 264 (372)
+|+||+..||+ |+|.||||+.+...+ +. + .++-.|+.-++++ +
T Consensus 186 ----np~l~~~SDfi-------a~N~~aYwd~~~~a~----------------~~-----~-~f~~~q~e~vqsa----~ 228 (305)
T COG5309 186 ----NPELCQASDFI-------AANAHAYWDGQTVAN----------------AA-----G-TFLLEQLERVQSA----C 228 (305)
T ss_pred ----ChHHhhhhhhh-------hcccchhccccchhh----------------hh-----h-HHHHHHHHHHHHh----c
Confidence 58899999987 799999998754321 10 1 2344456666554 2
Q ss_pred CCCCcceEeeeecCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeEEEEEeccCCCCC-CC-CCCCcee
Q 017408 265 FKKMEVIVTETGWASRGDSNE-AAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNENQKP-GP-TSERNFG 341 (372)
Q Consensus 265 ~~~~~vvItETGWPS~G~~~~-~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe~wK~-g~-~~E~~wG 341 (372)
..+|+++|+||||||+|..++ +.||++||++|+++++|.++ .+| .++|+||+|||+||. |. ++|+|||
T Consensus 229 g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~-~~G--------~d~fvfeAFdd~WK~~~~y~VEkywG 299 (305)
T COG5309 229 GTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALR-SCG--------YDVFVFEAFDDDWKADGSYGVEKYWG 299 (305)
T ss_pred CCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhh-ccC--------ccEEEeeeccccccCccccchhhcee
Confidence 345999999999999999987 79999999999999999885 454 899999999999995 44 7999999
Q ss_pred eecCCC
Q 017408 342 LFKPDG 347 (372)
Q Consensus 342 lf~~d~ 347 (372)
++..|+
T Consensus 300 v~~s~~ 305 (305)
T COG5309 300 VLSSDR 305 (305)
T ss_pred eeccCC
Confidence 999875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.06 E-value=2.3e-08 Score=98.94 Aligned_cols=247 Identities=15% Similarity=0.246 Sum_probs=124.2
Q ss_pred HHHHHHHHHhCCCCeEEEe---c------CCh-hH---HHHhhcCCCEEEEeccCCcc----------hhhcc-C----H
Q 017408 50 PDEVAVLLRASKIKNVRIY---D------ADH-SV---LKAFSGTGLELVVGLPNGLV----------KEMSA-N----E 101 (372)
Q Consensus 50 ~~~v~~~lk~~~~~~VRiY---~------~d~-~v---L~A~~~~gi~v~lGv~~~~~----------~~~a~-~----~ 101 (372)
..++.++||..|++.||+= + ||. .+ .+.+++.||+|+|-.--+|- ..... + .
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 3678999999999876664 2 232 23 35566799999998764331 11110 1 1
Q ss_pred HHHHHHHHHhhhhcC-CCccEEEEEeccccccC-----CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhcc
Q 017408 102 SHAMDWVKENVQNFL-PKTKICGIAVGNEVLGG-----ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFAN 175 (372)
Q Consensus 102 ~~a~~wv~~~i~~~~-~~~~I~~I~VGNEvl~~-----~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~ 175 (372)
++..++.++-+...- -+..++.|-||||.-.+ +...-.+.+...++.-.+++|+.+-+ +||-.-.. +
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~--~kV~lH~~-----~ 178 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN--IKVMLHLA-----N 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST--SEEEEEES------
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEC-----C
Confidence 222233332222211 23678999999998432 12234677888888888888875543 55433211 0
Q ss_pred CCCCCcccccccchhhhHHHHHHHhh---cCCCceeccCccccccCCCCccccccccccCCCccccCCCcccchhHHHHH
Q 017408 176 SYPPSSCIFKEGVDQFMKPLLDFFSQ---IGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQ 252 (372)
Q Consensus 176 s~pPS~g~F~~~~~~~l~~~ldfl~~---~~sp~~vNiyPyf~~~~~~~~i~~~~Alf~~~~~~~d~~~~~~y~nlfda~ 252 (372)
|-. ...+.-..|-|.. --|.++++.||||... + +-+...
T Consensus 179 --~~~--------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~-----l-----------------------~~l~~~ 220 (332)
T PF07745_consen 179 --GGD--------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT-----L-----------------------EDLKNN 220 (332)
T ss_dssp --TTS--------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST------H-----------------------HHHHHH
T ss_pred --CCc--------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch-----H-----------------------HHHHHH
Confidence 000 0112222233322 3468899999999641 0 112223
Q ss_pred HHHHHHHHHHhCCCCCcceEeeeecCCCCCC-----CC---------CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCce
Q 017408 253 IDAAYAALEDAGFKKMEVIVTETGWASRGDS-----NE---------AAATVDNARTYNYNLRKRLAKKKGTPLRPKNVV 318 (372)
Q Consensus 253 vDav~~a~~~~g~~~~~vvItETGWPS~G~~-----~~---------~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~ 318 (372)
++.+ .++ | +|+|+|.|||||..-.. +. -.+|++.|++|++++++.+.+-.+ +..+
T Consensus 221 l~~l---~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~g~ 289 (332)
T PF07745_consen 221 LNDL---ASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GGGL 289 (332)
T ss_dssp HHHH---HHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEE
T ss_pred HHHH---HHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CCeE
Confidence 3332 233 3 69999999999998221 11 136899999999999998864211 1246
Q ss_pred eEEEEEec-cCCC-----CCCCCCCCceeeecCCCCeeEee
Q 017408 319 KAYVFAIF-NENQ-----KPGPTSERNFGLFKPDGSIAYDI 353 (372)
Q Consensus 319 ~~y~F~~F-De~w-----K~g~~~E~~wGlf~~d~~~ky~l 353 (372)
-+|+-|-- -..+ ..|...|.. +||+.++++--.|
T Consensus 290 GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 290 GVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred EEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 67766532 1111 123334444 8999888765443
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.74 E-value=4.1e-07 Score=88.64 Aligned_cols=130 Identities=20% Similarity=0.361 Sum_probs=74.7
Q ss_pred ceeEEecCCCCC--------CCCHH---HHHHHHHhCCCCeEEEecCCh-----hHHHHhhcCCCEEEEeccCCcchhhc
Q 017408 35 TYGINYGRIADN--------IPSPD---EVAVLLRASKIKNVRIYDADH-----SVLKAFSGTGLELVVGLPNGLVKEMS 98 (372)
Q Consensus 35 ~~GvnYg~~~~n--------~ps~~---~v~~~lk~~~~~~VRiY~~d~-----~vL~A~~~~gi~v~lGv~~~~~~~~a 98 (372)
..||.|-|-++. |-.++ ..+.+||++|++.||+|..|+ .-.++|++.||-|++.+.... .++.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-cccc
Confidence 469999886651 22333 234688999999999998764 367899999999999998652 2332
Q ss_pred cCHHHHHHH-------HHHhhhhcCCCccEEEEEeccccccCC-CcchHHHHHHHHHHHHHHHHhCCCCCCeEEEec
Q 017408 99 ANESHAMDW-------VKENVQNFLPKTKICGIAVGNEVLGGA-DSELWGALLGAVKNVYNSIKKLHLDDVVQITTA 167 (372)
Q Consensus 99 ~~~~~a~~w-------v~~~i~~~~~~~~I~~I~VGNEvl~~~-~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~ 167 (372)
+... +..| ...-|..+..=.|+-+..+|||++... ....++.+-.+++++|+-+++.++. +|+|+-+
T Consensus 108 r~~P-~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYs 182 (314)
T PF03198_consen 108 RSDP-APSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYS 182 (314)
T ss_dssp TTS-------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEE
T ss_pred CCCC-cCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEE
Confidence 2211 1233 222233332226899999999999753 2345788999999999999999986 4888865
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=3.8e-06 Score=81.05 Aligned_cols=252 Identities=16% Similarity=0.294 Sum_probs=137.0
Q ss_pred CHHHHHHHHHhCCCCeEEE--e----cCC--------hh------HHHHhhcCCCEEEEeccCCcchhhc--cCHHHHHH
Q 017408 49 SPDEVAVLLRASKIKNVRI--Y----DAD--------HS------VLKAFSGTGLELVVGLPNGLVKEMS--ANESHAMD 106 (372)
Q Consensus 49 s~~~v~~~lk~~~~~~VRi--Y----~~d--------~~------vL~A~~~~gi~v~lGv~~~~~~~~a--~~~~~a~~ 106 (372)
-++++.+.||..|++.||+ | |.| .+ +-+.+++.||||++-.--+|. .+ .-+..-++
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDf--waDPakQ~kPka 141 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDF--WADPAKQKKPKA 141 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhh--ccChhhcCCcHH
Confidence 3567789999999986665 4 221 22 334456799999998765431 11 01111223
Q ss_pred HH-------HHhhhhc--------C-CCccEEEEEeccccccC-----CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEE
Q 017408 107 WV-------KENVQNF--------L-PKTKICGIAVGNEVLGG-----ADSELWGALLGAVKNVYNSIKKLHLDDVVQIT 165 (372)
Q Consensus 107 wv-------~~~i~~~--------~-~~~~I~~I~VGNEvl~~-----~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVs 165 (372)
|. +..|-.| . ....+..|=||||.-.. ++..-...+...++.-.+++|... ..|||-
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~ 219 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVA 219 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEE
Confidence 42 2222111 1 12467889999998532 222124555555666666666533 346664
Q ss_pred eceehhhhccCCCCCcccccccchhhhHHHHHHHhhcCCCceeccCccccccCCCCccccccccccCCCccccCCCcccc
Q 017408 166 TAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHY 245 (372)
Q Consensus 166 T~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~~~~~~~i~~~~Alf~~~~~~~d~~~~~~y 245 (372)
.- +.+. --.+.|+--....-+.-+|| +.|.+--||||...-+ .++
T Consensus 220 lH-----la~g--~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~----------------------nL~- 264 (403)
T COG3867 220 LH-----LAEG--ENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN----------------------NLT- 264 (403)
T ss_pred EE-----ecCC--CCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH----------------------HHH-
Confidence 42 2221 12233331101111223333 4678888999975211 011
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCcceEeeeec--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 017408 246 DNMLDAQIDAAYAALEDAGFKKMEVIVTETGW--------------ASRGDSNEAAATVDNARTYNYNLRKRLAKKKGTP 311 (372)
Q Consensus 246 ~nlfda~vDav~~a~~~~g~~~~~vvItETGW--------------PS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp 311 (372)
+|| +++-+ --+|.|+|.||+. |+.+...+-..+++-|++|.+++|..+.+ .|
T Consensus 265 ~nl-~dia~----------rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n---vp 330 (403)
T COG3867 265 TNL-NDIAS----------RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN---VP 330 (403)
T ss_pred hHH-HHHHH----------HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh---CC
Confidence 122 22111 1379999999998 66664333356788999999999998853 23
Q ss_pred CCCCCceeEEEEE-------------------eccCCCCCCCCCCCceeeecCCCCeeEeeeec
Q 017408 312 LRPKNVVKAYVFA-------------------IFNENQKPGPTSERNFGLFKPDGSIAYDIGFH 356 (372)
Q Consensus 312 ~rpg~~~~~y~F~-------------------~FDe~wK~g~~~E~~wGlf~~d~~~ky~l~~~ 356 (372)
.-.| .-+|+.| .-.|+|++|..++. =-||+-+|.|-..|+.-
T Consensus 331 ~~~G--lGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdN-qaLfdf~G~~LPSl~vF 391 (403)
T COG3867 331 KSNG--LGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDN-QALFDFNGHPLPSLNVF 391 (403)
T ss_pred CCCc--eEEEEecccceeccCCCccccchhhccCcccccCCCccch-hhhhhccCCcCcchhhh
Confidence 3222 3444433 23366776653433 35888888887777653
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.19 E-value=0.00034 Score=74.73 Aligned_cols=257 Identities=14% Similarity=0.135 Sum_probs=136.4
Q ss_pred eeEEecCCC---CCCCCHHHH---HHHHHhCCCCeEEEecC--ChhHHHHhhcCCCEEEEeccCCc--------------
Q 017408 36 YGINYGRIA---DNIPSPDEV---AVLLRASKIKNVRIYDA--DHSVLKAFSGTGLELVVGLPNGL-------------- 93 (372)
Q Consensus 36 ~GvnYg~~~---~n~ps~~~v---~~~lk~~~~~~VRiY~~--d~~vL~A~~~~gi~v~lGv~~~~-------------- 93 (372)
.|+|+=... ....+.+.. ++++|..|++.||+-.. ++..+.+|.+.||-|+.=++...
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 477763211 112344433 56789999999999543 67899999999998885443210
Q ss_pred -chhhc------cCHHHHHHHHHHhhhhcCCCccEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEe
Q 017408 94 -VKEMS------ANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHLDDVVQITT 166 (372)
Q Consensus 94 -~~~~a------~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT 166 (372)
..... +..+....-+++.|..+...-.|..=++|||.-... ...-..++.+.+.+++..- .=+|+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~-----~~~~~~~~~l~~~~k~~Dp--tR~vt~ 447 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASRE-----QGAREYFAPLAELTRKLDP--TRPVTC 447 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccc-----hhHHHHHHHHHHHHHhhCC--CCceEE
Confidence 00110 011222233555565544334588999999974321 1222344444555554332 223554
Q ss_pred ceehhhhccCCCCCcccccccchhhhHHHHHHHhhcCCCceeccCccccccCCCCccccccccccCCCccccCCCcccch
Q 017408 167 AHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYD 246 (372)
Q Consensus 167 ~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~~~~~~~i~~~~Alf~~~~~~~d~~~~~~y~ 246 (372)
...+. . +|. ...+.+.+|++ ..|.|+=|- .+..+. + ...
T Consensus 448 ~~~~~---~--~~~--------~~~~~~~~Dv~-------~~N~Y~~wy--~~~~~~----~---------------~~~ 486 (604)
T PRK10150 448 VNVMF---A--TPD--------TDTVSDLVDVL-------CLNRYYGWY--VDSGDL----E---------------TAE 486 (604)
T ss_pred Eeccc---C--Ccc--------cccccCcccEE-------EEcccceec--CCCCCH----H---------------HHH
Confidence 43110 0 110 01123445654 578765331 111000 0 001
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcceEeeeecCCCCCC--C-CCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeEEEE
Q 017408 247 NMLDAQIDAAYAALEDAGFKKMEVIVTETGWASRGDS--N-EAAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVF 323 (372)
Q Consensus 247 nlfda~vDav~~a~~~~g~~~~~vvItETGWPS~G~~--~-~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F 323 (372)
..++..++.. .+ .+ +||++++|.|+.+.-+- . ...-|.+.|..|++...+.+.+ +|. -.-.|+.
T Consensus 487 ~~~~~~~~~~----~~-~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW 553 (604)
T PRK10150 487 KVLEKELLAW----QE-KL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVW 553 (604)
T ss_pred HHHHHHHHHH----HH-hc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEE
Confidence 1222222221 11 13 89999999997663211 0 1234688888888877765532 232 3568999
Q ss_pred EeccCCCCCCC--CCCCceeeecCCCCeeEee
Q 017408 324 AIFNENQKPGP--TSERNFGLFKPDGSIAYDI 353 (372)
Q Consensus 324 ~~FDe~wK~g~--~~E~~wGlf~~d~~~ky~l 353 (372)
.+||-.+..|. ....+.||++.||+||-..
T Consensus 554 ~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 554 NFADFATSQGILRVGGNKKGIFTRDRQPKSAA 585 (604)
T ss_pred eeeccCCCCCCcccCCCcceeEcCCCCChHHH
Confidence 99996554321 1234789999999999754
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.17 E-value=0.0006 Score=64.42 Aligned_cols=129 Identities=18% Similarity=0.199 Sum_probs=82.9
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCCCeEEEecC-------------C-------hhHHHHhhcCCCEEEEeccCCc-
Q 017408 35 TYGINYGRIADNIPSPDEVAVLLRASKIKNVRIYDA-------------D-------HSVLKAFSGTGLELVVGLPNGL- 93 (372)
Q Consensus 35 ~~GvnYg~~~~n~ps~~~v~~~lk~~~~~~VRiY~~-------------d-------~~vL~A~~~~gi~v~lGv~~~~- 93 (372)
..|+|-. ..++. ..++.++.+++.|++.|||.-. + ..+|+++++.||+|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 4566665 22222 7788999999999999999721 1 1377889999999999887630
Q ss_pred ---chhhccCHHHHHHHHHH---hhhhcC-CCccEEEEEeccccccCCCc-----chHHHHHHHHHHHHHHHHhCCCCCC
Q 017408 94 ---VKEMSANESHAMDWVKE---NVQNFL-PKTKICGIAVGNEVLGGADS-----ELWGALLGAVKNVYNSIKKLHLDDV 161 (372)
Q Consensus 94 ---~~~~a~~~~~a~~wv~~---~i~~~~-~~~~I~~I~VGNEvl~~~~~-----~~~~~Lv~am~~v~~aL~~~gl~~~ 161 (372)
-...........+|+++ .+...+ ....|.++=+.||+...... .....+.+.++.+.+++|+.+-+..
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 01111122333344333 333333 34568899999999875322 1247788999999999999987643
Q ss_pred eEEE
Q 017408 162 VQIT 165 (372)
Q Consensus 162 IkVs 165 (372)
|-|+
T Consensus 168 i~~~ 171 (281)
T PF00150_consen 168 IIVG 171 (281)
T ss_dssp EEEE
T ss_pred eecC
Confidence 4333
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.73 E-value=0.0064 Score=57.96 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=54.1
Q ss_pred HHHHHHhCCCCCcceEeeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeEEEEEeccC-CCCCCCC
Q 017408 257 YAALEDAGFKKMEVIVTETGWASRGDSNEAAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNE-NQKPGPT 335 (372)
Q Consensus 257 ~~a~~~~g~~~~~vvItETGWPS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe-~wK~g~~ 335 (372)
...|++.+-.+++|.|||.+-|..+ +++.|+.+++++++.+.+. |. -.-+++..+.|. .|.++
T Consensus 172 ~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p~----v~gi~~Wg~~d~~~W~~~-- 235 (254)
T smart00633 172 RAALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---PA----VTGVTVWGVTDKYSWLDG-- 235 (254)
T ss_pred HHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---CC----eeEEEEeCCccCCcccCC--
Confidence 3334444445899999999998753 3478889999999988643 21 134555566653 45542
Q ss_pred CCCceeeecCCCCeeEee
Q 017408 336 SERNFGLFKPDGSIAYDI 353 (372)
Q Consensus 336 ~E~~wGlf~~d~~~ky~l 353 (372)
.+-|||+.|++||..+
T Consensus 236 --~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 236 --GAPLLFDANYQPKPAY 251 (254)
T ss_pred --CCceeECCCCCCChhh
Confidence 4779999999998654
No 9
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.98 E-value=0.089 Score=51.08 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=56.2
Q ss_pred ceeEEecCCCC---CCCCHHHH---HHHHHhCCCCeEEEec--CChhHHHHhhcCCCEEEEeccCCcc---hhh------
Q 017408 35 TYGINYGRIAD---NIPSPDEV---AVLLRASKIKNVRIYD--ADHSVLKAFSGTGLELVVGLPNGLV---KEM------ 97 (372)
Q Consensus 35 ~~GvnYg~~~~---n~ps~~~v---~~~lk~~~~~~VRiY~--~d~~vL~A~~~~gi~v~lGv~~~~~---~~~------ 97 (372)
..|||+..... ..++.+++ ++++|+.|++.||+.. .++..+.+|.+.||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 46899886432 23455544 4577899999999975 3678999999999999977765110 000
Q ss_pred ccC---HHHHHHHHHHhhhhcCCCccEEEEEecccc
Q 017408 98 SAN---ESHAMDWVKENVQNFLPKTKICGIAVGNEV 130 (372)
Q Consensus 98 a~~---~~~a~~wv~~~i~~~~~~~~I~~I~VGNEv 130 (372)
..+ .+.+.+.+++.|..+.-.-.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 111 233344566666655433358888999999
No 10
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.94 E-value=0.073 Score=50.44 Aligned_cols=193 Identities=18% Similarity=0.149 Sum_probs=102.5
Q ss_pred CEEEEeccCCcchhhccCHHHHHHHHHHhhhhcCCCccEEEEEeccccccCCC-cchHHHHHHHHHHHHHHHHhCCCCCC
Q 017408 83 LELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGAD-SELWGALLGAVKNVYNSIKKLHLDDV 161 (372)
Q Consensus 83 i~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~~~~-~~~~~~Lv~am~~v~~aL~~~gl~~~ 161 (372)
++-+-.+|.....+ ..|++ ++... ...++.|..=||+=.... ...+++.+...++..+.|+. ..
T Consensus 39 ~efvPmlwg~~~~~--------~~~~~-~v~~~--~~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~ 103 (239)
T PF11790_consen 39 LEFVPMLWGPGSDD--------DDWLA-NVQNA--HPGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PG 103 (239)
T ss_pred eeEeecccCCCCCc--------hHHHH-HHHhh--ccCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CC
Confidence 77777788653211 12222 23322 246899999999965421 12366777777776666663 24
Q ss_pred eEEEeceehhhhccCCCCCcccccccchhhhHHHHHHHhhcCCCceeccCccccccCCCCccccccccccCCCccccCCC
Q 017408 162 VQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKT 241 (372)
Q Consensus 162 IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~~~~~~~i~~~~Alf~~~~~~~d~~~ 241 (372)
+++..|.....-. . +|+.. +-|.+.++-+...+.+=.+++|+| ..+.
T Consensus 104 ~~l~sPa~~~~~~-~-~~~g~-------~Wl~~F~~~~~~~~~~D~iavH~Y---~~~~--------------------- 150 (239)
T PF11790_consen 104 VKLGSPAVAFTNG-G-TPGGL-------DWLSQFLSACARGCRVDFIAVHWY---GGDA--------------------- 150 (239)
T ss_pred cEEECCeecccCC-C-CCCcc-------HHHHHHHHhcccCCCccEEEEecC---CcCH---------------------
Confidence 7777664210000 0 11111 223322222211112223455555 1000
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCcceEeeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 017408 242 KLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTETGWASRGDSNEAAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAY 321 (372)
Q Consensus 242 ~~~y~nlfda~vDav~~a~~~~g~~~~~vvItETGWPS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y 321 (372)
.-|...++.+ .++.| +||+|||.|+...+ ...+.++++.|++..+..+.+.. . --.++
T Consensus 151 -----~~~~~~i~~~---~~~~~---kPIWITEf~~~~~~----~~~~~~~~~~fl~~~~~~ld~~~------~-Verya 208 (239)
T PF11790_consen 151 -----DDFKDYIDDL---HNRYG---KPIWITEFGCWNGG----SQGSDEQQASFLRQALPWLDSQP------Y-VERYA 208 (239)
T ss_pred -----HHHHHHHHHH---HHHhC---CCEEEEeecccCCC----CCCCHHHHHHHHHHHHHHHhcCC------C-eeEEE
Confidence 0122233333 33333 99999999988722 35788999999999999885322 2 35688
Q ss_pred EEEeccCCCCCCCCCCCceeeecCCCCe
Q 017408 322 VFAIFNENQKPGPTSERNFGLFKPDGSI 349 (372)
Q Consensus 322 ~F~~FDe~wK~g~~~E~~wGlf~~d~~~ 349 (372)
||...+ .+. .....-.|++.+|++
T Consensus 209 wF~~~~-~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 209 WFGFMN-DGS---GVNPNSALLDADGSL 232 (239)
T ss_pred eccccc-ccC---CCccccccccCCCCc
Confidence 888333 222 345566777777743
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=88.44 E-value=0.27 Score=50.93 Aligned_cols=284 Identities=15% Similarity=0.141 Sum_probs=129.0
Q ss_pred HHHHHHHHhCCCCeEEEec------C-------Ch-------hHHHHhhcCCCEEEEeccCCcchhhcc------CHHHH
Q 017408 51 DEVAVLLRASKIKNVRIYD------A-------DH-------SVLKAFSGTGLELVVGLPNGLVKEMSA------NESHA 104 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY~------~-------d~-------~vL~A~~~~gi~v~lGv~~~~~~~~a~------~~~~a 104 (372)
+|.++++|+.|++..|.== + |+ +++..+.+.||+.+|.+.--+++..-. ++..+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 5778999999999999752 1 22 478999999999999988655443211 11221
Q ss_pred HHHHHHh---hhhcCCCccEEEEEeccccccC-------C---Cc--------chHHHHHHHHHHHHHHHHhCCCCCCeE
Q 017408 105 MDWVKEN---VQNFLPKTKICGIAVGNEVLGG-------A---DS--------ELWGALLGAVKNVYNSIKKLHLDDVVQ 163 (372)
Q Consensus 105 ~~wv~~~---i~~~~~~~~I~~I~VGNEvl~~-------~---~~--------~~~~~Lv~am~~v~~aL~~~gl~~~Ik 163 (372)
.+..+. +...++ ..|+.-+.=||...- + .. .....++-+-..+.+++++.+-+ .+
T Consensus 141 -~~F~~Ya~~~~~~~g-d~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~--~~ 216 (455)
T PF00232_consen 141 -DWFARYAEFVFERFG-DRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD--GK 216 (455)
T ss_dssp -HHHHHHHHHHHHHHT-TTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--SE
T ss_pred -HHHHHHHHHHHHHhC-CCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--eE
Confidence 222211 212223 468888888998531 0 00 11334566666667777776643 45
Q ss_pred EEeceehhhhc--cCC---------------------CCCcccccccchhhhH----------HHHHHHhhcCCCceecc
Q 017408 164 ITTAHSQAVFA--NSY---------------------PPSSCIFKEGVDQFMK----------PLLDFFSQIGSPFCLNV 210 (372)
Q Consensus 164 VsT~~~~~~l~--~s~---------------------pPS~g~F~~~~~~~l~----------~~ldfl~~~~sp~~vNi 210 (372)
|+..++..... +.. |--.|.|...+...+. +-...|..+.|.+++|-
T Consensus 217 IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNY 296 (455)
T PF00232_consen 217 IGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINY 296 (455)
T ss_dssp EEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEE
T ss_pred EeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhcc
Confidence 66554432211 000 1011222111111111 11233456678889997
Q ss_pred CccccccCCC-Ccccccccc---ccC--C-CccccCCCcccchhHHHHHHHHHHHHHHHhCCCCCcceEeeeecCCCCCC
Q 017408 211 YPFLAYMSDP-ENIDINYAL---FQS--T-QGIDDSKTKLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTETGWASRGDS 283 (372)
Q Consensus 211 yPyf~~~~~~-~~i~~~~Al---f~~--~-~~~~d~~~~~~y~nlfda~vDav~~a~~~~g~~~~~vvItETGWPS~G~~ 283 (372)
|.=---...+ ......+.. +.. + .......+-..|-.-+- +.+... . .-++++||+|||.|++.....
T Consensus 297 Yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~---~~L~~l-~-~~Y~~~pI~ITENG~~~~~~~ 371 (455)
T PF00232_consen 297 YTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLR---DVLRYL-K-DRYGNPPIYITENGIGDPDEV 371 (455)
T ss_dssp SEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHH---HHHHHH-H-HHHTSSEEEEEEE---EETTC
T ss_pred ccceeeccCccccccccccCCccccccccccccccccCcccccchHh---hhhhhh-c-cccCCCcEEEecccccccccc
Confidence 7532221111 011111110 000 0 00000000011111111 222211 1 236789999999999887753
Q ss_pred CCCCCCHHH----HHHHHHHHHHHHHhhcCCCCCCCCceeEEEEEeccCCCCCCCCCCCceeeecCC------CCeeE
Q 017408 284 NEAAATVDN----ARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNENQKPGPTSERNFGLFKPD------GSIAY 351 (372)
Q Consensus 284 ~~~~as~~n----a~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe~wK~g~~~E~~wGlf~~d------~~~ky 351 (372)
....---.. -+.+++.+.+.+ ..|-+. .-+|..++.|- +--+.+..+.|||++.| |+||-
T Consensus 372 ~~~~v~D~~Ri~yl~~hl~~v~~Ai--~dGv~V-----~GY~~WSl~Dn-~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~ 441 (455)
T PF00232_consen 372 DDGKVDDDYRIDYLQDHLNQVLKAI--EDGVNV-----RGYFAWSLLDN-FEWAEGYKKRFGLVYVDFFDTLKRTPKK 441 (455)
T ss_dssp TTSHBSHHHHHHHHHHHHHHHHHHH--HTT-EE-----EEEEEETSB----BGGGGGGSE--SEEEETTTTTEEEEBH
T ss_pred cccCcCcHHHHHHHHHHHHHHHhhh--ccCCCe-----eeEeeeccccc-cccccCccCccCceEEcCCCCcCeeecc
Confidence 221111122 244444444444 345322 35777888873 22222489999999999 66664
No 12
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=88.10 E-value=3 Score=41.96 Aligned_cols=96 Identities=21% Similarity=0.283 Sum_probs=59.9
Q ss_pred CCCeEEEec-CChhHHHHhhcCCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhcCCCccEEEEEeccccccCCCcchH
Q 017408 61 KIKNVRIYD-ADHSVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELW 139 (372)
Q Consensus 61 ~~~~VRiY~-~d~~vL~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~~~~~~~~ 139 (372)
.+++|-+|+ .|++++..+...|++|++..-.. .+.+ ++++.-+++++..+. +...-...+|-+==|-....+....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv~-~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKVE-LAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHHH-HHHHhCCCeEEEcccCCCCCCcchH
Confidence 468888886 48899999999999999764322 2223 355554555554332 2111235566555554432122235
Q ss_pred HHHHHHHHHHHHHHHhCCCC
Q 017408 140 GALLGAVKNVYNSIKKLHLD 159 (372)
Q Consensus 140 ~~Lv~am~~v~~aL~~~gl~ 159 (372)
..+..-|+++|++|++.+.+
T Consensus 132 ~~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 132 YALTELVKETTKAFKKENPG 151 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCC
Confidence 67889999999999987643
No 13
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=82.70 E-value=5.5 Score=39.97 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=51.1
Q ss_pred HHHHHHHHHhCCCCeEEEec-------C-----C----hhHHHHhhcCCCEEEEeccCCcchh-----------------
Q 017408 50 PDEVAVLLRASKIKNVRIYD-------A-----D----HSVLKAFSGTGLELVVGLPNGLVKE----------------- 96 (372)
Q Consensus 50 ~~~v~~~lk~~~~~~VRiY~-------~-----d----~~vL~A~~~~gi~v~lGv~~~~~~~----------------- 96 (372)
.++.++++|..|++.|||-. + | ..+|..+++.||+|+|+++....+.
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 35667888899999999732 1 1 2478888999999999997321100
Q ss_pred ---------hccC----HHHHHHHHHHhhhhcCCCccEEEEEecccccc
Q 017408 97 ---------MSAN----ESHAMDWVKENVQNFLPKTKICGIAVGNEVLG 132 (372)
Q Consensus 97 ---------~a~~----~~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~ 132 (372)
..-+ .+.+.+.++..+..|.....|.++-|+||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0001 12344445444445544467999999999865
No 14
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=78.98 E-value=3.5 Score=43.05 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCCeEEEec------------CCh-------hHHHHhhcCCCEEEEeccCCcchh
Q 017408 51 DEVAVLLRASKIKNVRIYD------------ADH-------SVLKAFSGTGLELVVGLPNGLVKE 96 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY~------------~d~-------~vL~A~~~~gi~v~lGv~~~~~~~ 96 (372)
+|.++++++.|++..|+== .|+ +++.++.+.||+-+|.+.--+++.
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 5778999999998888641 132 488999999999999998655543
No 15
>TIGR03356 BGL beta-galactosidase.
Probab=78.41 E-value=5.3 Score=41.19 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=45.1
Q ss_pred CCCCcceEeeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--hcCCCCCCCCceeEEEEEeccC-CCCCCCCCCCcee
Q 017408 265 FKKMEVIVTETGWASRGDSNEAAATVDNARTYNYNLRKRLAK--KKGTPLRPKNVVKAYVFAIFNE-NQKPGPTSERNFG 341 (372)
Q Consensus 265 ~~~~~vvItETGWPS~G~~~~~~as~~na~~y~~~li~~~~~--~~Gtp~rpg~~~~~y~F~~FDe-~wK~g~~~E~~wG 341 (372)
+++.||+|||.|+..........---+.--.|++.-++.+.. ..|-|. .-++.-++.|- .|.. +..+.||
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v-----~GY~~Wsl~Dn~ew~~--gy~~rfG 407 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDV-----RGYFVWSLLDNFEWAE--GYSKRFG 407 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCE-----EEEEecccccccchhc--ccccccc
Confidence 555689999999975432110001112233455554444332 356444 34777788874 3544 3899999
Q ss_pred eecCCCC
Q 017408 342 LFKPDGS 348 (372)
Q Consensus 342 lf~~d~~ 348 (372)
|++.|+.
T Consensus 408 l~~VD~~ 414 (427)
T TIGR03356 408 LVHVDYE 414 (427)
T ss_pred eEEECCC
Confidence 9998865
No 16
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=75.37 E-value=9.8 Score=34.26 Aligned_cols=84 Identities=12% Similarity=0.272 Sum_probs=45.9
Q ss_pred HHHHhhcC--CCEEEEeccCCcch---hhccCHHHHHHHHHHhhhhcCCCccEEEEEeccccccCCCcchHHHHHHHHHH
Q 017408 74 VLKAFSGT--GLELVVGLPNGLVK---EMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKN 148 (372)
Q Consensus 74 vL~A~~~~--gi~v~lGv~~~~~~---~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~ 148 (372)
-++.+++. |+||++.|...... .++.+.+..++.++ ++..+...-.+.+|-+==|.....+......++..|+.
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~ 132 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRE 132 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHH
Confidence 45556654 99999888764322 23445444333322 23222222245555554454432110125788999999
Q ss_pred HHHHHHhCCC
Q 017408 149 VYNSIKKLHL 158 (372)
Q Consensus 149 v~~aL~~~gl 158 (372)
+|++|.+.++
T Consensus 133 lr~~l~~~~~ 142 (210)
T cd00598 133 LRSALGAANY 142 (210)
T ss_pred HHHHhcccCc
Confidence 9999987654
No 17
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=72.57 E-value=13 Score=27.59 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC-----hhHHHHhhcCCCEEEEeccC
Q 017408 48 PSPDEVAVLLRASKIKNVRIYDAD-----HSVLKAFSGTGLELVVGLPN 91 (372)
Q Consensus 48 ps~~~v~~~lk~~~~~~VRiY~~d-----~~vL~A~~~~gi~v~lGv~~ 91 (372)
-+++++++..+.+|++.|=+=|.+ +...+.++..||+++.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 368899999999999999888765 34556677899999999864
No 18
>PRK09936 hypothetical protein; Provisional
Probab=72.53 E-value=34 Score=33.67 Aligned_cols=58 Identities=29% Similarity=0.358 Sum_probs=40.8
Q ss_pred ceeEEecCCCCCC-CCHHHHH---HHHHhCCCCeEEE-e----cCC--------hhHHHHhhcCCCEEEEeccCC
Q 017408 35 TYGINYGRIADNI-PSPDEVA---VLLRASKIKNVRI-Y----DAD--------HSVLKAFSGTGLELVVGLPNG 92 (372)
Q Consensus 35 ~~GvnYg~~~~n~-ps~~~v~---~~lk~~~~~~VRi-Y----~~d--------~~vL~A~~~~gi~v~lGv~~~ 92 (372)
..|+=|-|...+. -++++-. +.++..|++.+=+ | +.| ...|+++.+.||+|.||++-|
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 3467799987773 4666554 4556789876644 2 222 257888899999999999976
No 19
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.08 E-value=13 Score=37.69 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCcceEeeeecCCCCCCCC---CCCCHHHHHHHHHHHHHHHHhh
Q 017408 245 YDNMLDAQIDAAYAALEDAGFKKMEVIVTETGWASRGDSNE---AAATVDNARTYNYNLRKRLAKK 307 (372)
Q Consensus 245 y~nlfda~vDav~~a~~~~g~~~~~vvItETGWPS~G~~~~---~~as~~na~~y~~~li~~~~~~ 307 (372)
|.|-|++-+--......-.|++..+|+.| |||.|.-.+ ...|...++..+.++++.++..
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 44555543322211223457788888886 999998543 2466666677777788877643
No 20
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=70.04 E-value=25 Score=34.19 Aligned_cols=84 Identities=13% Similarity=0.149 Sum_probs=50.7
Q ss_pred ChhHHHHhhcCCCEEEEeccCCc--------chhhccCHHHHHHHHHHhhhhcCCCccEEEEEeccccccCCCcchHHHH
Q 017408 71 DHSVLKAFSGTGLELVVGLPNGL--------VKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGAL 142 (372)
Q Consensus 71 d~~vL~A~~~~gi~v~lGv~~~~--------~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~~~~~~~~~~L 142 (372)
++.++.++++.++||++.|.+.. ...+.+++..-+..++ ++..+...-.+.+|-+-=|.+.. ......
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~~~~---~d~~~~ 122 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKKYGYDGVNIDFENVPP---EDREAY 122 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCCcEEEecccCCH---HHHHHH
Confidence 35788888888999998876532 1334445443333333 33322211135566665565532 235678
Q ss_pred HHHHHHHHHHHHhCCC
Q 017408 143 LGAVKNVYNSIKKLHL 158 (372)
Q Consensus 143 v~am~~v~~aL~~~gl 158 (372)
+.-|+.+|.+|++.|+
T Consensus 123 ~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 123 TQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHhhhcCc
Confidence 8999999999987665
No 21
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=68.89 E-value=53 Score=37.82 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=58.1
Q ss_pred eeEEecCCC---CCCCCHHHH---HHHHHhCCCCeEEEecC--ChhHHHHhhcCCCEEEEeccCCc--------chhhcc
Q 017408 36 YGINYGRIA---DNIPSPDEV---AVLLRASKIKNVRIYDA--DHSVLKAFSGTGLELVVGLPNGL--------VKEMSA 99 (372)
Q Consensus 36 ~GvnYg~~~---~n~ps~~~v---~~~lk~~~~~~VRiY~~--d~~vL~A~~~~gi~v~lGv~~~~--------~~~~a~ 99 (372)
.|+|+-... ....+++++ ++++|+.|++.||+-.. ++..+.+|.+.||=|+--++... ...+..
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 477764321 122455544 56789999999999753 56789999999998886442110 001112
Q ss_pred CH---HHHHHHHHHhhhhcCCCccEEEEEecccccc
Q 017408 100 NE---SHAMDWVKENVQNFLPKTKICGIAVGNEVLG 132 (372)
Q Consensus 100 ~~---~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~ 132 (372)
++ ++..+.+++.|......-.|..=++|||.-.
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 22 1222335555555433345888899999854
No 22
>PLN02998 beta-glucosidase
Probab=65.91 E-value=9.8 Score=40.12 Aligned_cols=75 Identities=21% Similarity=0.318 Sum_probs=44.4
Q ss_pred CCCCcceEeeeecCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeEEEEEeccC-CCCCCCCCCCceee
Q 017408 265 FKKMEVIVTETGWASRGDSN-EAAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNE-NQKPGPTSERNFGL 342 (372)
Q Consensus 265 ~~~~~vvItETGWPS~G~~~-~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe-~wK~g~~~E~~wGl 342 (372)
+++.+|+|||-|+....+.. ...-=++--+.+++.+.+.+ ..|.+. .-||.-++.|- .|..| .++.|||
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi--~dGv~V-----~GY~~WSl~DnfEW~~G--y~~RfGL 460 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSL--RKGSDV-----KGYFQWSLMDVFELFGG--YERSFGL 460 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHH--HcCCCE-----EEEeeccchhhhchhcc--ccCccce
Confidence 55558999999998653100 00011223344444444444 356443 34777788873 35544 8999999
Q ss_pred ecCCCC
Q 017408 343 FKPDGS 348 (372)
Q Consensus 343 f~~d~~ 348 (372)
++.|..
T Consensus 461 v~VD~~ 466 (497)
T PLN02998 461 LYVDFK 466 (497)
T ss_pred EEECCC
Confidence 998754
No 23
>PLN02849 beta-glucosidase
Probab=65.06 E-value=10 Score=40.07 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=44.2
Q ss_pred CCCCcceEeeeecCCCCCCCCCC---CCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeEEEEEeccC-CCCCCCCCCCce
Q 017408 265 FKKMEVIVTETGWASRGDSNEAA---ATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNE-NQKPGPTSERNF 340 (372)
Q Consensus 265 ~~~~~vvItETGWPS~G~~~~~~---as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe-~wK~g~~~E~~w 340 (372)
+++.||+|||-|++......+.. -=++--+.+++.+.+.+ ..|-+. .-||.-++.|- .|.. +.++.|
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai--~dGv~V-----~GY~~WSl~DnfEW~~--Gy~~Rf 453 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAV--RNGSDT-----RGYFVWSFMDLYELLK--GYEFSF 453 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHH--HcCCCE-----EEEeeccchhhhchhc--cccCcc
Confidence 55568999999998654311111 11222334444444443 356443 34777788873 3444 489999
Q ss_pred eeecCCCC
Q 017408 341 GLFKPDGS 348 (372)
Q Consensus 341 Glf~~d~~ 348 (372)
||++.|..
T Consensus 454 GLi~VD~~ 461 (503)
T PLN02849 454 GLYSVNFS 461 (503)
T ss_pred ceEEECCC
Confidence 99998764
No 24
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=57.98 E-value=1.1e+02 Score=35.38 Aligned_cols=96 Identities=17% Similarity=0.123 Sum_probs=58.7
Q ss_pred eeEEecCC---CCCCCCHHHH---HHHHHhCCCCeEEEecC--ChhHHHHhhcCCCEEEEeccCCcc-----hhhccCH-
Q 017408 36 YGINYGRI---ADNIPSPDEV---AVLLRASKIKNVRIYDA--DHSVLKAFSGTGLELVVGLPNGLV-----KEMSANE- 101 (372)
Q Consensus 36 ~GvnYg~~---~~n~ps~~~v---~~~lk~~~~~~VRiY~~--d~~vL~A~~~~gi~v~lGv~~~~~-----~~~a~~~- 101 (372)
.|+|+-.. .....+++++ ++++|..|++.||+-.. ++..++.|.+.||=|+--++.... ..+..++
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 47876432 1123466654 46778999999999653 578999999999988865443110 1112222
Q ss_pred --HHHHHHHHHhhhhcCCCccEEEEEeccccc
Q 017408 102 --SHAMDWVKENVQNFLPKTKICGIAVGNEVL 131 (372)
Q Consensus 102 --~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl 131 (372)
++..+.+++.|......-.|..=++|||.-
T Consensus 433 ~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 222333445555443334588999999974
No 25
>PLN02814 beta-glucosidase
Probab=57.77 E-value=19 Score=38.14 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCeEEEec------------CCh-------hHHHHhhcCCCEEEEeccCCcchh
Q 017408 51 DEVAVLLRASKIKNVRIYD------------ADH-------SVLKAFSGTGLELVVGLPNGLVKE 96 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY~------------~d~-------~vL~A~~~~gi~v~lGv~~~~~~~ 96 (372)
+|.++++|+.|++.-|.== .|+ +++.++.+.||+-+|.+.=-+++.
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~ 144 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQ 144 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 5778999999988887541 132 478999999999999988655553
No 26
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=57.32 E-value=42 Score=31.50 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=25.6
Q ss_pred HHhCCCCCcceEeeeecCCCCCCCC---CCCCHHHHHHHHHHHHHHHH
Q 017408 261 EDAGFKKMEVIVTETGWASRGDSNE---AAATVDNARTYNYNLRKRLA 305 (372)
Q Consensus 261 ~~~g~~~~~vvItETGWPS~G~~~~---~~as~~na~~y~~~li~~~~ 305 (372)
...++++.+|+. .|||.|...+ ...+.......+..++..+.
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 345677755555 6999998543 23444455556666666664
No 27
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=57.26 E-value=75 Score=31.04 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=47.7
Q ss_pred hHHHHhhc--CCCEEE--E--eccCC-cchhhccCHHHHHHHHHHhhhhcCCCccEEEEEecc-ccccC-CCcchHHHHH
Q 017408 73 SVLKAFSG--TGLELV--V--GLPNG-LVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGN-EVLGG-ADSELWGALL 143 (372)
Q Consensus 73 ~vL~A~~~--~gi~v~--l--Gv~~~-~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGN-Evl~~-~~~~~~~~Lv 143 (372)
..+.+++. .++||+ + |=|.. ....+++++..-+++++..+ .+...-.+.+|-+=- |.... +.+.....++
T Consensus 55 ~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s~~-~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~ 133 (318)
T cd02876 55 GWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKLLV-TTAKKNHFDGIVLEVWSQLAAYGVPDKRKELI 133 (318)
T ss_pred HHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHHHH-HHHHHcCCCcEEEechhhhcccCCHHHHHHHH
Confidence 34455554 578988 4 43543 24556666655555544332 222112345554421 11111 0112346788
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEec
Q 017408 144 GAVKNVYNSIKKLHLDDVVQITTA 167 (372)
Q Consensus 144 ~am~~v~~aL~~~gl~~~IkVsT~ 167 (372)
..|+.+|++|.+.|+. +.++.+
T Consensus 134 ~~l~el~~~l~~~~~~--l~~~v~ 155 (318)
T cd02876 134 QLVIHLGETLHSANLK--LILVIP 155 (318)
T ss_pred HHHHHHHHHHhhcCCE--EEEEEc
Confidence 8999999999887653 444443
No 28
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=54.63 E-value=17 Score=32.62 Aligned_cols=37 Identities=32% Similarity=0.516 Sum_probs=26.4
Q ss_pred HHHHHhCCCCeEEEecCChhHHHHhhcCCCEEEEecc
Q 017408 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLP 90 (372)
Q Consensus 54 ~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~ 90 (372)
.|.|+..|+++||+.+.+|.-+.++.+.||+|.=-||
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 5789999999999999999999999999999874443
No 29
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=53.48 E-value=41 Score=33.39 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=40.4
Q ss_pred CCCEEEEecc--CC---cchhhccCHHHHHHHHHHhhhhcCCCccEEEEEeccccccC--CCcchHHHHHHHHHHHHHHH
Q 017408 81 TGLELVVGLP--NG---LVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGG--ADSELWGALLGAVKNVYNSI 153 (372)
Q Consensus 81 ~gi~v~lGv~--~~---~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~~--~~~~~~~~Lv~am~~v~~aL 153 (372)
.++||++.|- .. ....+++++...+..++..+ .+...-.+.+|-+==|.... ........++..|+.+|++|
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv-~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l 147 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAI-AFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAF 147 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHH-HHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 5899987774 22 23445555544444443322 22111134455444343221 11123567899999999999
Q ss_pred HhC
Q 017408 154 KKL 156 (372)
Q Consensus 154 ~~~ 156 (372)
++.
T Consensus 148 ~~~ 150 (362)
T cd02872 148 EPE 150 (362)
T ss_pred Hhh
Confidence 987
No 30
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=52.85 E-value=41 Score=31.72 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=45.8
Q ss_pred hHHHHhhcCCCEEEEeccCCcc---hhhccCHHHHHHHHHHhhhhcCCCccEEEEEeccccccCCCcchHHHHHHHHHHH
Q 017408 73 SVLKAFSGTGLELVVGLPNGLV---KEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNV 149 (372)
Q Consensus 73 ~vL~A~~~~gi~v~lGv~~~~~---~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v 149 (372)
..+++++..|+||++.|..... ..+..++...+++++. +..+...-.+.+|-+==|-... . .......++++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~---~-~~~~~~fv~~L 124 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDV---T-FGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCc---c-HhHHHHHHHHH
Confidence 3566777789999987765421 2244455444444433 2222111134555554454322 1 34567789999
Q ss_pred HHHHHhCCC
Q 017408 150 YNSIKKLHL 158 (372)
Q Consensus 150 ~~aL~~~gl 158 (372)
|++|++.|+
T Consensus 125 r~~l~~~~~ 133 (253)
T cd06545 125 YAALKKEGK 133 (253)
T ss_pred HHHHhhcCc
Confidence 999987664
No 31
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=52.44 E-value=30 Score=34.20 Aligned_cols=222 Identities=13% Similarity=0.118 Sum_probs=109.6
Q ss_pred hHHHHhhcCCCEEE--EeccCCcchhhccC------------HHHHHHHHHHhhhhcCCC-ccEEEEEeccccccCCC--
Q 017408 73 SVLKAFSGTGLELV--VGLPNGLVKEMSAN------------ESHAMDWVKENVQNFLPK-TKICGIAVGNEVLGGAD-- 135 (372)
Q Consensus 73 ~vL~A~~~~gi~v~--lGv~~~~~~~~a~~------------~~~a~~wv~~~i~~~~~~-~~I~~I~VGNEvl~~~~-- 135 (372)
.+++-++..||+|- .=||-...+....+ .+..+++|.+-+.. |.+ .+|...=|=||++....
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~-y~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTR-YKDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHH-TTTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhH-hccccceEEEEEeeecccCCCcc
Confidence 46777788998874 33554332221111 22334556554444 454 47999999999997532
Q ss_pred ----cchH------HHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCcccccccchhhhHHHHHHHhhcCCC
Q 017408 136 ----SELW------GALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSP 205 (372)
Q Consensus 136 ----~~~~------~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfl~~~~sp 205 (372)
.+.. ..+..+.+-.|++... ++.---+ .+++. ..-...+..++..|.+.+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~ND-y~~~~-----------~~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYND-YNIES-----------PAKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEE-SSTTS-----------THHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEecc-ccccc-----------hHHHHHHHHHHHHHHhCCCc
Confidence 1122 2444555666655432 3222111 11111 01124566777777655443
Q ss_pred ceeccCccccccCCCCccccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHhCCCCCcceEeeeecCCCCCCCC
Q 017408 206 FCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTETGWASRGDSNE 285 (372)
Q Consensus 206 ~~vNiyPyf~~~~~~~~i~~~~Alf~~~~~~~d~~~~~~y~nlfda~vDav~~a~~~~g~~~~~vvItETGWPS~G~~~~ 285 (372)
+|=-=|| ++...+. . .+.+..+|++..--+++|.|||--=........
T Consensus 204 -------------------IdgIG~Q---~H~~~~~----~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~ 251 (320)
T PF00331_consen 204 -------------------IDGIGLQ---SHFDAGY----P------PEQIWNALDRFASLGLPIHITELDVRDDDNPPD 251 (320)
T ss_dssp -------------------S-EEEEE---EEEETTS----S------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC
T ss_pred -------------------cceechh---hccCCCC----C------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcc
Confidence 2211111 2222111 1 233444455555457999999986554443211
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeEEEEEeccCC-CCCCCCCCCceeeecCCCCeeEe
Q 017408 286 AAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNEN-QKPGPTSERNFGLFKPDGSIAYD 352 (372)
Q Consensus 286 ~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe~-wK~g~~~E~~wGlf~~d~~~ky~ 352 (372)
....+.|+.+++++++.+.+.. |..-..+.+....|.. |.+... -.+=+||+.|.+||..
T Consensus 252 -~~~~~~qA~~~~~~~~~~~~~~-----~~~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 252 -AEEEEAQAEYYRDFLTACFSHP-----PAAVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-----HCTEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred -hHHHHHHHHHHHHHHHHHHhCC-----ccCCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 2346678889999999886532 0012334455556633 664311 2334799999999864
No 32
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=49.31 E-value=2.5e+02 Score=28.56 Aligned_cols=142 Identities=11% Similarity=0.128 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHH---HhCCCCeEEEecC-------C-------hhHHHHhhcC-CCE-EEEeccCCcchhhccCHHHHHH
Q 017408 46 NIPSPDEVAVLL---RASKIKNVRIYDA-------D-------HSVLKAFSGT-GLE-LVVGLPNGLVKEMSANESHAMD 106 (372)
Q Consensus 46 n~ps~~~v~~~l---k~~~~~~VRiY~~-------d-------~~vL~A~~~~-gi~-v~lGv~~~~~~~~a~~~~~a~~ 106 (372)
..-++++|++.+ ...|++.|.+.+. | .++++++.+. +++ +-++--. ...+ +.+.. +
T Consensus 165 r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~--~~ell-~ 239 (414)
T TIGR01579 165 RSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID--PEDI--DEELL-E 239 (414)
T ss_pred ccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC--hhhC--CHHHH-H
Confidence 345778887654 3468999987542 2 1466666543 442 4443211 1111 12221 1
Q ss_pred HHHHhhhhcCCCccEEEEEeccccccC------CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCC
Q 017408 107 WVKENVQNFLPKTKICGIAVGNEVLGG------ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPS 180 (372)
Q Consensus 107 wv~~~i~~~~~~~~I~~I~VGNEvl~~------~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS 180 (372)
.+++ . +. ....|.+|=|-... +......+...+++.+|+.. .| +.+++.. +- ++|
T Consensus 240 ~m~~----~-~~-~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g----i~i~~~~----Iv-G~P-- 300 (414)
T TIGR01579 240 AIAS----E-KR-LCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD----YAFGTDI----IV-GFP-- 300 (414)
T ss_pred HHHh----c-Cc-cCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC----CeeeeeE----EE-ECC--
Confidence 2221 1 10 12355565554321 01223567777777777532 22 4444432 11 233
Q ss_pred cccccccchhhhHHHHHHHhhcCCCceeccCcccccc
Q 017408 181 SCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYM 217 (372)
Q Consensus 181 ~g~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~~ 217 (372)
.+....+...++|+.+.. +-.+++|||-.+.
T Consensus 301 -----gET~ed~~~tl~~i~~~~-~~~~~~~~~sp~p 331 (414)
T TIGR01579 301 -----GESEEDFQETLRMVKEIE-FSHLHIFPYSARP 331 (414)
T ss_pred -----CCCHHHHHHHHHHHHhCC-CCEEEeeecCCCC
Confidence 122466788899998765 4567888876543
No 33
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=48.45 E-value=3.3e+02 Score=28.41 Aligned_cols=184 Identities=16% Similarity=0.184 Sum_probs=80.5
Q ss_pred EEEeccccccC--CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCcccccccchhhhHHHHHHHh
Q 017408 123 GIAVGNEVLGG--ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFS 200 (372)
Q Consensus 123 ~I~VGNEvl~~--~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfl~ 200 (372)
..=|=||.=.. +......+-...-+.+.++||+.. ..++|+-|-.. +. ....+...++|+.
T Consensus 158 ~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp~~~--~~-------------~~~~~~~~l~~~~ 220 (486)
T PF01229_consen 158 YFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGPAFA--WA-------------YDEWCEDFLEFCK 220 (486)
T ss_dssp EEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEEEEE--TT--------------THHHHHHHHHHH
T ss_pred eEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCcccc--cc-------------HHHHHHHHHHHHh
Confidence 44568886432 111224556777788888888865 34889887210 00 0123456666766
Q ss_pred hcCCC---ceeccCccccccCCCCccccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHhCCCCCcceEeeeec
Q 017408 201 QIGSP---FCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTETGW 277 (372)
Q Consensus 201 ~~~sp---~~vNiyPyf~~~~~~~~i~~~~Alf~~~~~~~d~~~~~~y~nlfda~vDav~~a~~~~g~~~~~vvItETGW 277 (372)
.++.| +..|.||+=......+.. + ..+. ....+++. +.-+...+...+.|++++.+|| |
T Consensus 221 ~~~~~~DfiS~H~y~~~~~~~~~~~~---~-------~~~~-----~~~~~~~~-~~~~~~~~~~e~~p~~~~~~tE--~ 282 (486)
T PF01229_consen 221 GNNCPLDFISFHSYGTDSAEDINENM---Y-------ERIE-----DSRRLFPE-LKETRPIINDEADPNLPLYITE--W 282 (486)
T ss_dssp HCT---SEEEEEEE-BESESE-SS-E---E-------EEB-------HHHHHHH-HHHHHHHHHTSSSTT--EEEEE--E
T ss_pred cCCCCCCEEEEEecccccccccchhH---H-------hhhh-----hHHHHHHH-HHHHHHHHhhccCCCCceeecc--c
Confidence 54433 245556542111000000 0 0000 01122222 2223334555688999999999 8
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeEEE---EE-eccCCCCCCCCCCCceeeecCCCCeeE
Q 017408 278 ASRGDSNE-AAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYV---FA-IFNENQKPGPTSERNFGLFKPDGSIAY 351 (372)
Q Consensus 278 PS~G~~~~-~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~---F~-~FDe~wK~g~~~E~~wGlf~~d~~~ky 351 (372)
.+.-.... -.-|.-+|+-..+++++... + .++.|- |. .|.|.--+...+-.-|||+..++-+|-
T Consensus 283 n~~~~~~~~~~dt~~~aA~i~k~lL~~~~---~-------~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~KP 351 (486)
T PF01229_consen 283 NASISPRNPQHDTCFKAAYIAKNLLSNDG---A-------FLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPKP 351 (486)
T ss_dssp ES-SSTT-GGGGSHHHHHHHHH-HHHHGG---G-------T-SEEEES-SBS---TTSS-SSSSSS-S-SEECCCEE-H
T ss_pred ccccCCCcchhccccchhhHHHHHHHhhh---h-------hhhhhhccchhhhhhccCCCCCceecchhhhhccCCCch
Confidence 87665433 23445555544454555431 1 123322 21 233322222235566999999986664
No 34
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=48.22 E-value=2.9e+02 Score=27.48 Aligned_cols=131 Identities=10% Similarity=0.083 Sum_probs=78.0
Q ss_pred cCCCCCcccccccchhhhHHHHHHHhhcCCCceeccCccccccCCCCccccccccccCCCc-------cccCCCcccchh
Q 017408 175 NSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQG-------IDDSKTKLHYDN 247 (372)
Q Consensus 175 ~s~pPS~g~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~~~~~~~i~~~~Alf~~~~~-------~~d~~~~~~y~n 247 (372)
..+|...+.+.++..+.+++++|.+.++++.+++-+.-- +.......+..-. ..|+.- .....|.-.-..
T Consensus 62 ~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~--G~~~~~~~~~~~~-~~ps~~~~~~~~~~~~~mt~~eI~~ 138 (343)
T cd04734 62 SPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHL--GRRGDGDGSWLPP-LAPSAVPEPRHRAVPKAMEEEDIEE 138 (343)
T ss_pred cCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCC--CcCcCcccCCCcc-cCCCCCCCCCCCCCCCcCCHHHHHH
Confidence 346666778887777899999999999999999887542 1111000000000 000000 000111111234
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcceEeeeecC-----CCCC---CCCCCCCHHHHHHHHHHHHHHHHhhcCC
Q 017408 248 MLDAQIDAAYAALEDAGFKKMEVIVTETGWA-----SRGD---SNEAAATVDNARTYNYNLRKRLAKKKGT 310 (372)
Q Consensus 248 lfda~vDav~~a~~~~g~~~~~vvItETGWP-----S~G~---~~~~~as~~na~~y~~~li~~~~~~~Gt 310 (372)
+.+...+|...|. ++||.+++|.-.- |+. |.-. .++-+.|++|-.+|..++++.+++..|.
T Consensus 139 ii~~f~~AA~ra~-~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 139 IIAAFADAARRCQ-AGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 5555566666554 4799999999765 643 3222 2234678999999999999999877763
No 35
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=47.24 E-value=95 Score=31.82 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhCCC
Q 017408 139 WGALLGAVKNVYNSIKKLHL 158 (372)
Q Consensus 139 ~~~Lv~am~~v~~aL~~~gl 158 (372)
...++..|+.+|++|+..++
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 168 KEQFTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHHHHhcccCc
Confidence 56788899999999987765
No 36
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=46.83 E-value=30 Score=31.64 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=29.6
Q ss_pred HHHHHhCCCCeEEEecCChhHHHHhhcCCCEEE
Q 017408 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELV 86 (372)
Q Consensus 54 ~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~ 86 (372)
.|.|+..|+++||+.+.++.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998877789999999987
No 37
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=46.57 E-value=30 Score=31.81 Aligned_cols=33 Identities=27% Similarity=0.512 Sum_probs=29.9
Q ss_pred HHHHHhCCCCeEEEecCChhHHHHhhcCCCEEE
Q 017408 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELV 86 (372)
Q Consensus 54 ~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~ 86 (372)
.|.|+..|+++||+.+.++.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998877789999999997
No 38
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=46.32 E-value=55 Score=34.34 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCCeEEEec-------------CCh-------hHHHHhhcCCCEEEEeccCCcch
Q 017408 51 DEVAVLLRASKIKNVRIYD-------------ADH-------SVLKAFSGTGLELVVGLPNGLVK 95 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY~-------------~d~-------~vL~A~~~~gi~v~lGv~~~~~~ 95 (372)
++.++++++.|++..|+== .|+ +++.++.+.||+-+|.++--+++
T Consensus 70 ~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 70 KEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred HHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 5778999999988887531 132 47899999999999999865554
No 39
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=45.59 E-value=71 Score=31.14 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=43.9
Q ss_pred HHHhhc--CCCEEEEeccC----CcchhhccCHHHHHHHHHHhhhhcCCCccEEEEEeccccccCCCcchHHHHHHHHHH
Q 017408 75 LKAFSG--TGLELVVGLPN----GLVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKN 148 (372)
Q Consensus 75 L~A~~~--~gi~v~lGv~~----~~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~ 148 (372)
+.+++. .++||++.|.. +....+.++....+..++ +|..+...-...+|-+==|..... ......++..|+.
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~-~~d~~~~~~ll~~ 134 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGAR-GDDRENYTALLKE 134 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCC-ccHHHHHHHHHHH
Confidence 455554 48999987765 223445555443333333 232222112466666644544321 1224578889999
Q ss_pred HHHHHHhC
Q 017408 149 VYNSIKKL 156 (372)
Q Consensus 149 v~~aL~~~ 156 (372)
+|++|.+.
T Consensus 135 lr~~l~~~ 142 (334)
T smart00636 135 LREALDKE 142 (334)
T ss_pred HHHHHHHh
Confidence 99999864
No 40
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=45.34 E-value=56 Score=34.72 Aligned_cols=75 Identities=16% Similarity=0.338 Sum_probs=49.3
Q ss_pred hCCCCCcceEeeeecCCCCCCCC--C-----CCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeEEEEEeccC-CCCCCC
Q 017408 263 AGFKKMEVIVTETGWASRGDSNE--A-----AATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNE-NQKPGP 334 (372)
Q Consensus 263 ~g~~~~~vvItETGWPS~G~~~~--~-----~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe-~wK~g~ 334 (372)
-.|+|.+|.|+|-|-+...+... . ..=.+..+.|++.+.+.+. ..|. +..-+|+.++.|- .|..|
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~-~dgv-----nv~GYf~WSLmDnfEw~~G- 475 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIK-EDGV-----NVKGYFVWSLLDNFEWLDG- 475 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHH-hcCC-----ceeeEEEeEcccchhhhcC-
Confidence 35889999999999988765321 1 1224455666666666553 2332 1245899998883 45554
Q ss_pred CCCCceeeecC
Q 017408 335 TSERNFGLFKP 345 (372)
Q Consensus 335 ~~E~~wGlf~~ 345 (372)
..-.|||++-
T Consensus 476 -y~~RFGlyyV 485 (524)
T KOG0626|consen 476 -YKVRFGLYYV 485 (524)
T ss_pred -cccccccEEE
Confidence 7789999995
No 41
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=42.93 E-value=1.6e+02 Score=29.46 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=48.8
Q ss_pred CceeEEecCCCCCCCCHHHHHHHHHhCCCCeEEEecCChhHHHHhhcCCCEEEEeccCCcchhhccCHHHHHHHHHHhhh
Q 017408 34 GTYGINYGRIADNIPSPDEVAVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQ 113 (372)
Q Consensus 34 ~~~GvnYg~~~~n~ps~~~v~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~ 113 (372)
..+|||.-...++ |..++.++.+...+.+.|=+..-+|...+.+++.|++|+.-|+ +...|+.+.+..
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~---------s~~~A~~a~~~G-- 123 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVP---------SPGLLKQFLENG-- 123 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeC---------CHHHHHHHHHcC--
Confidence 3578887544322 3345556666666677775544456556888899999998777 334455544322
Q ss_pred hcCCCccEEEEEecccc
Q 017408 114 NFLPKTKICGIAVGNEV 130 (372)
Q Consensus 114 ~~~~~~~I~~I~VGNEv 130 (372)
.+ .-|+-|.|.
T Consensus 124 ----aD--~vVaqG~EA 134 (320)
T cd04743 124 ----AR--KFIFEGREC 134 (320)
T ss_pred ----CC--EEEEecCcC
Confidence 12 346779898
No 42
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=41.69 E-value=54 Score=34.39 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCCeEEEec-------------CCh-------hHHHHhhcCCCEEEEeccCCcchh
Q 017408 51 DEVAVLLRASKIKNVRIYD-------------ADH-------SVLKAFSGTGLELVVGLPNGLVKE 96 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY~-------------~d~-------~vL~A~~~~gi~v~lGv~~~~~~~ 96 (372)
++.++++++.|++..|.== .|+ +++.++.+.||+-+|.++--+++.
T Consensus 76 ~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 76 KEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred HHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 5778999999998887541 132 478899999999999998655543
No 43
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=40.86 E-value=55 Score=34.34 Aligned_cols=46 Identities=24% Similarity=0.161 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCCeEEEec-------------CCh-------hHHHHhhcCCCEEEEeccCCcchh
Q 017408 51 DEVAVLLRASKIKNVRIYD-------------ADH-------SVLKAFSGTGLELVVGLPNGLVKE 96 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY~-------------~d~-------~vL~A~~~~gi~v~lGv~~~~~~~ 96 (372)
++.++++++.|++..|+=- .|+ .++.++.+.||+.+|.+.--+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 5778899999888877531 132 478999999999999888655544
No 44
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=40.83 E-value=2.6e+02 Score=24.87 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=52.6
Q ss_pred HHHHHHHhCCCCeEEE----------ecC------------C--hhHHHHhhcCCCEEEEeccCCc-chhhccCHHH---
Q 017408 52 EVAVLLRASKIKNVRI----------YDA------------D--HSVLKAFSGTGLELVVGLPNGL-VKEMSANESH--- 103 (372)
Q Consensus 52 ~v~~~lk~~~~~~VRi----------Y~~------------d--~~vL~A~~~~gi~v~lGv~~~~-~~~~a~~~~~--- 103 (372)
+..+.++..||+.|=+ |.+ | ..+|+++.+.||||.+|++.+. --. ..+.+.
T Consensus 24 ~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~-~~~~~~~~~ 102 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWD-QGDLDWEAE 102 (166)
T ss_pred HHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhh-ccCHHHHHH
Confidence 4566778888877722 111 1 1478899999999999999651 101 112111
Q ss_pred HHHHHHHhhhh-cCCCccEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHhC
Q 017408 104 AMDWVKENVQN-FLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKL 156 (372)
Q Consensus 104 a~~wv~~~i~~-~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~ 156 (372)
-..-+.+.+.. |.....+.+-=+-.|.=... -...+..+.+.+.|++.
T Consensus 103 ~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~-----~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 103 RNKQVADELWQRYGHHPSFYGWYIPYEIDDYN-----WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEecccCCcc-----cchHHHHHHHHHHHHHh
Confidence 11113333322 22123466777777774331 12355556666666554
No 45
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=39.57 E-value=2.2e+02 Score=29.06 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCccccc--ccchhhhHHHHHHHhhcCCCceeccCccccc
Q 017408 139 WGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFK--EGVDQFMKPLLDFFSQIGSPFCLNVYPFLAY 216 (372)
Q Consensus 139 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~--~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~ 216 (372)
..++...+++.|+. +|++.+-.--.-+.. ..+.|. .+.-|.+..+++.|.+.+--++++++|+...
T Consensus 42 ~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~----~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~ 109 (441)
T PF01055_consen 42 QDEVREVIDRYRSN--------GIPLDVIWIDDDYQD----GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSN 109 (441)
T ss_dssp HHHHHHHHHHHHHT--------T--EEEEEE-GGGSB----TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEET
T ss_pred HHHHHHHHHHHHHc--------CCCccceeccccccc----cccccccccccccchHHHHHhHhhCCcEEEEEeecccCC
Confidence 55666666666653 466666542222322 122333 2223678999999999999999999998764
Q ss_pred cCCCCccccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHhCC----CCCcceEeeeecCCCCCCCCCCCCHHH
Q 017408 217 MSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDAGF----KKMEVIVTETGWASRGDSNEAAATVDN 292 (372)
Q Consensus 217 ~~~~~~i~~~~Alf~~~~~~~d~~~~~~y~nlfda~vDav~~a~~~~g~----~~~~vvItETGWPS~G~~~~~~as~~n 292 (372)
... +|. .++.. .+.|+ ++-...+++. ||-.+.- ..-+-.+
T Consensus 110 ~~~------~~~-------------------~~~~~--------~~~~~~v~~~~g~~~~~~~-w~g~~~~--~Dftnp~ 153 (441)
T PF01055_consen 110 DSP------DYE-------------------NYDEA--------KEKGYLVKNPDGSPYIGRV-WPGKGGF--IDFTNPE 153 (441)
T ss_dssp TTT------B-H-------------------HHHHH--------HHTT-BEBCTTSSB-EEEE-TTEEEEE--B-TTSHH
T ss_pred CCC------cch-------------------hhhhH--------hhcCceeecccCCcccccc-cCCcccc--cCCCChh
Confidence 321 111 12221 12221 2336677777 8844321 2344455
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCceeEEEEEeccCC
Q 017408 293 ARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNEN 329 (372)
Q Consensus 293 a~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe~ 329 (372)
++.++.+.++.+.+..| ++.++..+=+..
T Consensus 154 a~~w~~~~~~~~~~~~G--------vdg~w~D~~E~~ 182 (441)
T PF01055_consen 154 ARDWWKEQLKELLDDYG--------VDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHHHHHHHHTTST---------SEEEEESTTTB
T ss_pred HHHHHHHHHHHHHhccC--------CceEEeecCCcc
Confidence 88888777777764334 899998874333
No 46
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=38.42 E-value=5.1e+02 Score=27.44 Aligned_cols=65 Identities=23% Similarity=0.205 Sum_probs=41.7
Q ss_pred HHHHHhhhhcCC-CccEEEEEeccccccC------CCcc--hHHHHHHHHHH-HHHHHHhCCCCCCeEEEe-ceeh
Q 017408 106 DWVKENVQNFLP-KTKICGIAVGNEVLGG------ADSE--LWGALLGAVKN-VYNSIKKLHLDDVVQITT-AHSQ 170 (372)
Q Consensus 106 ~wv~~~i~~~~~-~~~I~~I~VGNEvl~~------~~~~--~~~~Lv~am~~-v~~aL~~~gl~~~IkVsT-~~~~ 170 (372)
..+.+-|+.|-. +..|-+|++.||+... ++.. .++++...|++ +.-+|++.|++.++|+-. .|..
T Consensus 208 ~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~ 283 (496)
T PF02055_consen 208 DYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNR 283 (496)
T ss_dssp HHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEG
T ss_pred HHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 445556666542 4789999999999852 2211 26677777876 899999999965687644 4443
No 47
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=37.30 E-value=68 Score=33.69 Aligned_cols=75 Identities=13% Similarity=0.266 Sum_probs=42.8
Q ss_pred CCcceEeeeecCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeEEEEEeccC-CCCCCCCCCCce
Q 017408 267 KMEVIVTETGWASRGDSNEAA-----ATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNE-NQKPGPTSERNF 340 (372)
Q Consensus 267 ~~~vvItETGWPS~G~~~~~~-----as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe-~wK~g~~~E~~w 340 (372)
++||+|||-|..........+ -=++--+.+++.+.+.+ ...|.+. .-||.-++.|- .|..| +.++.|
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai-~~dGv~v-----~GY~~WSl~DnfEw~~G-~y~~Rf 440 (477)
T PRK15014 368 QKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAV-TYDGVDL-----MGYTPWGCIDCVSFTTG-QYSKRY 440 (477)
T ss_pred CCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHH-HHcCCCE-----EEEeeccchhhhcccCC-CccCcc
Confidence 368999999998654311111 11222233444444433 1256444 34777888873 35544 388999
Q ss_pred eeecCCCC
Q 017408 341 GLFKPDGS 348 (372)
Q Consensus 341 Glf~~d~~ 348 (372)
||++.|.+
T Consensus 441 Gl~~VD~~ 448 (477)
T PRK15014 441 GFIYVNKH 448 (477)
T ss_pred ceEEECCC
Confidence 99988654
No 48
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=37.30 E-value=77 Score=26.35 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCeEEEec--CC---hhHHHHhhcCCCEEEE
Q 017408 51 DEVAVLLRASKIKNVRIYD--AD---HSVLKAFSGTGLELVV 87 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY~--~d---~~vL~A~~~~gi~v~l 87 (372)
+++.+.++.+|++.|+++= .. ..+|++++..|+++.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 3455677789999999993 33 4699999999998753
No 49
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=36.86 E-value=79 Score=29.03 Aligned_cols=52 Identities=17% Similarity=0.448 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCcccccccchhhhH-HHHHHHhhcCCCceecc
Q 017408 144 GAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMK-PLLDFFSQIGSPFCLNV 210 (372)
Q Consensus 144 ~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~l~-~~ldfl~~~~sp~~vNi 210 (372)
.+++.+.+.+...|+.+ |++.+.... +.| + .+.+. ++.+.+.+.+-|+++|+
T Consensus 85 ~~~~~l~~~~~~~g~~G-v~l~~~~~~------~~~-------~-~~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 85 DAVEELERALQELGFRG-VKLHPDLGG------FDP-------D-DPRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHTTTESE-EEEESSETT------CCT-------T-SGHCHHHHHHHHHHHT-EEEEEE
T ss_pred hHHHHHHHhccccceee-eEecCCCCc------ccc-------c-cHHHHHHHHHHHHhhccceeeec
Confidence 56777888888888865 776653311 111 1 23344 89999999998888774
No 50
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=36.82 E-value=42 Score=34.14 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=28.8
Q ss_pred HHHHHhCCCCeEEEecCChhHHHHhhcCCCEEE
Q 017408 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELV 86 (372)
Q Consensus 54 ~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~ 86 (372)
.|+|+..|+++||+. .||.=+.++.+.||+|.
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 689999999999999 78887788899999987
No 51
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.89 E-value=38 Score=27.70 Aligned_cols=8 Identities=50% Similarity=0.683 Sum_probs=4.1
Q ss_pred CcchHHHHH
Q 017408 1 MKKSLRFFL 9 (372)
Q Consensus 1 ~~~~~~~~~ 9 (372)
|+ |-.+||
T Consensus 1 Ma-SK~~ll 8 (95)
T PF07172_consen 1 MA-SKAFLL 8 (95)
T ss_pred Cc-hhHHHH
Confidence 77 444444
No 52
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=35.74 E-value=56 Score=29.89 Aligned_cols=33 Identities=36% Similarity=0.589 Sum_probs=29.5
Q ss_pred HHHHHhCCCCeEEEecCChhHHHHhhcCCCEEE
Q 017408 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELV 86 (372)
Q Consensus 54 ~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~ 86 (372)
.|.|+..|+++||+.+.++.=+.++.+.||+|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 588899999999999988877788999999997
No 53
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=35.37 E-value=3.7e+02 Score=24.97 Aligned_cols=107 Identities=19% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC-----------hhHHHHhhcCCCEEEEeccCCc---chh--hccCHHHHHHHHHHh
Q 017408 48 PSPDEVAVLLRASKIKNVRIYDAD-----------HSVLKAFSGTGLELVVGLPNGL---VKE--MSANESHAMDWVKEN 111 (372)
Q Consensus 48 ps~~~v~~~lk~~~~~~VRiY~~d-----------~~vL~A~~~~gi~v~lGv~~~~---~~~--~a~~~~~a~~wv~~~ 111 (372)
|+. ...+.+|+.|.+.|=.|=++ +.=++.+...|++++. |++.. ... .+.....|.+-++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 454 55677888888877777332 1235777889999875 45432 111 112233444445544
Q ss_pred hhhcCCCccEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHhCCCC
Q 017408 112 VQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHLD 159 (372)
Q Consensus 112 i~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl~ 159 (372)
..--.|...+.++.|=...... +....++|+++-+.++|...|+.
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~~---~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALDD---EVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCcc---hhHHHHHHHHHHHHHHHHhcCCc
Confidence 4444576677888886655432 34679999999999999998875
No 54
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=34.86 E-value=47 Score=33.76 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=30.4
Q ss_pred HHHHHhCCCCeEEEecCChhHHHHhhcCCCEEEEec
Q 017408 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGL 89 (372)
Q Consensus 54 ~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv 89 (372)
.|+|+..|+++||+.+ ||.=+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 6889999999999999 8888888999999997333
No 55
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=34.62 E-value=4.6e+02 Score=25.81 Aligned_cols=131 Identities=14% Similarity=0.154 Sum_probs=78.0
Q ss_pred CCCCCcccccccchhhhHHHHHHHhhcCCCceeccCccccccCCCCcccc------------ccccccCCCccc------
Q 017408 176 SYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENIDI------------NYALFQSTQGID------ 237 (372)
Q Consensus 176 s~pPS~g~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~~~~~~~i~~------------~~Alf~~~~~~~------ 237 (372)
.+|...+.+.++..+.++++.|-+.++++.+++-++- .+.......+. ......|+....
T Consensus 63 ~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~ 140 (336)
T cd02932 63 ITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAH--AGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPT 140 (336)
T ss_pred CCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccC--CCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCC
Confidence 4555567777777899999999999999999888643 12111110100 000011110000
Q ss_pred -cCCCcccchhHHHHHHHHHHHHHHHhCCCCCcceEeeee------cCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhhcC
Q 017408 238 -DSKTKLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTETG------WASR-GDSNEAAATVDNARTYNYNLRKRLAKKKG 309 (372)
Q Consensus 238 -d~~~~~~y~nlfda~vDav~~a~~~~g~~~~~vvItETG------WPS~-G~~~~~~as~~na~~y~~~li~~~~~~~G 309 (372)
...+.-.-..+.+...++...+. ++||.+++|-.+--. .|.. -..++-+.|.+|-.+|....++.+++..|
T Consensus 141 p~~mt~~eI~~ii~~~~~aA~~a~-~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG 219 (336)
T cd02932 141 PRELTREEIAEVVDAFVAAARRAV-EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP 219 (336)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC
Confidence 00111112456667777777664 479999999887532 2522 22223467999999999999999987665
No 56
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=34.12 E-value=1.1e+02 Score=30.82 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCccccc-ccchhhhHHHHHHHhhc
Q 017408 139 WGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFK-EGVDQFMKPLLDFFSQI 202 (372)
Q Consensus 139 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~-~~~~~~l~~~ldfl~~~ 202 (372)
...+...|+++|++|++. -+...||-+|+.+.+ -.|.|+ ..+.| ..||+|.++
T Consensus 318 ik~MssRI~~MR~aLrd~----L~aL~TPGtWDHI~~----QiGMFSyTGLtp---~qV~~li~~ 371 (410)
T KOG1412|consen 318 IKTMSSRIKKMRTALRDH----LVALKTPGTWDHITQ----QIGMFSYTGLTP---AQVDHLIEN 371 (410)
T ss_pred HHHHHHHHHHHHHHHHHH----HHhcCCCCcHHHHHh----hccceeecCCCH---HHHHHHHHh
Confidence 567788899999999863 256899999998865 346665 22223 367787654
No 57
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.76 E-value=2.7e+02 Score=26.22 Aligned_cols=70 Identities=17% Similarity=0.117 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC--------hhHHHHhhc-CCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhcCCC
Q 017408 48 PSPDEVAVLLRASKIKNVRIYDAD--------HSVLKAFSG-TGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPK 118 (372)
Q Consensus 48 ps~~~v~~~lk~~~~~~VRiY~~d--------~~vL~A~~~-~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~ 118 (372)
.+|-++++.+++.|++.+=+.|.| .++++.+++ .-.+|.+|=-.. +.+.++.|+..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIr-------s~e~~~~~l~~-------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIR-------DIEKAKRLLSL-------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcC-------CHHHHHHHHHC--------
Confidence 478899999988999999999865 257777665 445788864433 33445555532
Q ss_pred ccEEEEEeccccccC
Q 017408 119 TKICGIAVGNEVLGG 133 (372)
Q Consensus 119 ~~I~~I~VGNEvl~~ 133 (372)
.+..|+||.|.+.+
T Consensus 95 -Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 -DVNALVFSTIVFTN 108 (232)
T ss_pred -CCCEEEECchhhCC
Confidence 24567999999864
No 58
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.71 E-value=2.8e+02 Score=26.02 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHh-CCCCeEEEecCC---------hhHHHHhh-cCCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhcC
Q 017408 48 PSPDEVAVLLRA-SKIKNVRIYDAD---------HSVLKAFS-GTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFL 116 (372)
Q Consensus 48 ps~~~v~~~lk~-~~~~~VRiY~~d---------~~vL~A~~-~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~ 116 (372)
.+|.++++.+.+ .|++.+=+.|.| .++++.++ ..+++|.+|=-.. +.+.++.++.
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIr-------s~e~v~~~l~------- 96 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIR-------TKSQIMDYFA------- 96 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcC-------CHHHHHHHHH-------
Confidence 478888888877 789999999864 24776665 5789999985543 2334444443
Q ss_pred CCccEEEEEeccccccC
Q 017408 117 PKTKICGIAVGNEVLGG 133 (372)
Q Consensus 117 ~~~~I~~I~VGNEvl~~ 133 (372)
.-+..|+||+|.+.+
T Consensus 97 --~Ga~kvvigt~a~~~ 111 (234)
T PRK13587 97 --AGINYCIVGTKGIQD 111 (234)
T ss_pred --CCCCEEEECchHhcC
Confidence 124567899999864
No 59
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.45 E-value=5e+02 Score=26.68 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCcccccccchhhhHHHHHHHhhcCCCceeccCccccc
Q 017408 138 LWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAY 216 (372)
Q Consensus 138 ~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~ 216 (372)
...+...+++.+++++ ..+.++|.. +- ++| .+....+...++|+...+ +-.+++++|-..
T Consensus 280 ~~~~~~~~i~~lr~~~------~~i~i~~d~----Iv-G~P-------gET~ed~~~tl~~i~~l~-~~~~~~~~~sp~ 339 (439)
T PRK14328 280 TREYYLELVEKIKSNI------PDVAITTDI----IV-GFP-------GETEEDFEETLDLVKEVR-YDSAFTFIYSKR 339 (439)
T ss_pred CHHHHHHHHHHHHHhC------CCCEEEEEE----EE-ECC-------CCCHHHHHHHHHHHHhcC-CCcccceEecCC
Confidence 3677777777777652 124454432 21 333 122466778889987654 445788777543
No 60
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.21 E-value=1.2e+02 Score=28.52 Aligned_cols=87 Identities=18% Similarity=0.333 Sum_probs=53.8
Q ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHHhCCCCeEEEecCC-----hhHHHHhhcCCCEEEEeccCCcchhhccCHHH
Q 017408 29 VQAFTGTYGINYGRIADNIPSPDEVAVLLRASKIKNVRIYDAD-----HSVLKAFSGTGLELVVGLPNGLVKEMSANESH 103 (372)
Q Consensus 29 ~~~~~~~~GvnYg~~~~n~ps~~~v~~~lk~~~~~~VRiY~~d-----~~vL~A~~~~gi~v~lGv~~~~~~~~a~~~~~ 103 (372)
..++...+||.|-...-.++. .--+++|||+- ..+.++....-+.++|.+-..+..++ ..
T Consensus 38 ~~~~~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----en 102 (207)
T KOG0078|consen 38 NTSFISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----EN 102 (207)
T ss_pred cCCccceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HH
Confidence 345567889988654434443 12478899873 34667665544555555444333333 34
Q ss_pred HHHHHHHhhhhcCCCccEEEEEecccccc
Q 017408 104 AMDWVKENVQNFLPKTKICGIAVGNEVLG 132 (372)
Q Consensus 104 a~~wv~~~i~~~~~~~~I~~I~VGNEvl~ 132 (372)
...|++ +|..+-++ .+.-|.|||-.=.
T Consensus 103 i~~W~~-~I~e~a~~-~v~~~LvGNK~D~ 129 (207)
T KOG0078|consen 103 IRNWIK-NIDEHASD-DVVKILVGNKCDL 129 (207)
T ss_pred HHHHHH-HHHhhCCC-CCcEEEeeccccc
Confidence 556875 67777654 6889999998743
No 61
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=33.06 E-value=1e+02 Score=26.46 Aligned_cols=43 Identities=14% Similarity=0.331 Sum_probs=32.4
Q ss_pred CHHHHHHHHHhCCCCeEEEecC---------------------C--hhHHHHhhcCCCEEEEeccC
Q 017408 49 SPDEVAVLLRASKIKNVRIYDA---------------------D--HSVLKAFSGTGLELVVGLPN 91 (372)
Q Consensus 49 s~~~v~~~lk~~~~~~VRiY~~---------------------d--~~vL~A~~~~gi~v~lGv~~ 91 (372)
+|+++++.||..+++.|-+|.- | .++++|+.+.||+|++-+-.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 4678888888888888888641 2 25778999999999876553
No 62
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.86 E-value=3.2e+02 Score=28.09 Aligned_cols=139 Identities=12% Similarity=0.193 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHH---hCCCCeEEEec-------CC-------hhHHHHhhcCCC-EEEEeccCCcchhhccCHHHHHHHH
Q 017408 47 IPSPDEVAVLLR---ASKIKNVRIYD-------AD-------HSVLKAFSGTGL-ELVVGLPNGLVKEMSANESHAMDWV 108 (372)
Q Consensus 47 ~ps~~~v~~~lk---~~~~~~VRiY~-------~d-------~~vL~A~~~~gi-~v~lGv~~~~~~~~a~~~~~a~~wv 108 (372)
.-++++|++.++ ..|++.|.+.+ .| .++++.+...|+ .+-++..+. ..+ +.+..
T Consensus 166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p--~~i--~~ell---- 237 (440)
T PRK14334 166 SRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHP--MNF--TDDVI---- 237 (440)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCc--ccC--CHHHH----
Confidence 346788776543 36787777643 22 146677766665 343432211 112 12211
Q ss_pred HHhhhhcCCCccEEEEEeccccccC------CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCcc
Q 017408 109 KENVQNFLPKTKICGIAVGNEVLGG------ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSC 182 (372)
Q Consensus 109 ~~~i~~~~~~~~I~~I~VGNEvl~~------~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g 182 (372)
+.+... + ..+.++.+|=|-... +.....++.+.+++.+|++ |. .+.+++.. +. ++|
T Consensus 238 -~~l~~~-~-~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~----~~--~i~i~~d~----Iv-G~P---- 299 (440)
T PRK14334 238 -AAMAET-P-AVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREA----LP--DVVLSTDI----IV-GFP---- 299 (440)
T ss_pred -HHHHhc-C-cCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHh----CC--CcEEEEeE----EE-ECC----
Confidence 122221 1 124566666444321 1122356777777777655 32 24455432 21 233
Q ss_pred cccccchhhhHHHHHHHhhcCCCceeccCcccc
Q 017408 183 IFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLA 215 (372)
Q Consensus 183 ~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~ 215 (372)
.+....+.+.++|+.+.+ +-.+++|+|-.
T Consensus 300 ---gEt~ed~~~tl~~i~~l~-~~~i~~f~ysp 328 (440)
T PRK14334 300 ---GETEEDFQETLSLYDEVG-YDSAYMFIYSP 328 (440)
T ss_pred ---CCCHHHHHHHHHHHHhcC-CCEeeeeEeeC
Confidence 122466778889987654 44577777643
No 63
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=31.86 E-value=1e+02 Score=32.22 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCeEEEec------C------Ch-------hHHHHhhcCCCEEEEeccCCcchh
Q 017408 51 DEVAVLLRASKIKNVRIYD------A------DH-------SVLKAFSGTGLELVVGLPNGLVKE 96 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY~------~------d~-------~vL~A~~~~gi~v~lGv~~~~~~~ 96 (372)
++.++++++.|++..|+=- + |+ +++.++.+.||+-+|.+.--+++.
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 5778999999988887541 1 32 478899999999999998655543
No 64
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=31.85 E-value=2.5e+02 Score=25.56 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCcceEee-eecCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhhcC
Q 017408 245 YDNMLDAQIDAAYAALEDAGFKKMEVIVTE-TGWASRGDSNE-AAATVDNARTYNYNLRKRLAKKKG 309 (372)
Q Consensus 245 y~nlfda~vDav~~a~~~~g~~~~~vvItE-TGWPS~G~~~~-~~as~~na~~y~~~li~~~~~~~G 309 (372)
+..-++..++.+ +.++|++||++.| .++|.. ..+. .....+......+..+..+. ..|
T Consensus 76 ~~~~~~~fv~~i-----R~~hP~tPIllv~~~~~~~~-~~~~~~~~~~~~~~~~~r~~v~~l~-~~g 135 (178)
T PF14606_consen 76 FRERLDGFVKTI-----REAHPDTPILLVSPIPYPAG-YFDNSRGETVEEFREALREAVEQLR-KEG 135 (178)
T ss_dssp HHHHHHHHHHHH-----HTT-SSS-EEEEE----TTT-TS--TTS--HHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHH-----HHhCCCCCEEEEecCCcccc-ccCchHHHHHHHHHHHHHHHHHHHH-HcC
Confidence 334444455544 3568999999999 455554 4332 45677777777788888775 345
No 65
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=31.43 E-value=1.6e+02 Score=27.50 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC---------hhHHHHhh-cCCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhcCC
Q 017408 48 PSPDEVAVLLRASKIKNVRIYDAD---------HSVLKAFS-GTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLP 117 (372)
Q Consensus 48 ps~~~v~~~lk~~~~~~VRiY~~d---------~~vL~A~~-~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~ 117 (372)
.+|-++++.+...+++.+=+-|.| ..+++.++ ..+++|.+|=... +.+.++.|+..
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIr-------s~ed~~~ll~~------- 94 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIR-------SIEDAERLLDA------- 94 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE--------SHHHHHHHHHT-------
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccC-------cHHHHHHHHHh-------
Confidence 478899999988999999888753 23555444 5799999997643 34555566542
Q ss_pred CccEEEEEeccccccC
Q 017408 118 KTKICGIAVGNEVLGG 133 (372)
Q Consensus 118 ~~~I~~I~VGNEvl~~ 133 (372)
-+..|++|.|.+.+
T Consensus 95 --Ga~~Vvigt~~~~~ 108 (229)
T PF00977_consen 95 --GADRVVIGTEALED 108 (229)
T ss_dssp --T-SEEEESHHHHHC
T ss_pred --CCCEEEeChHHhhc
Confidence 24579999999965
No 66
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=31.12 E-value=1e+02 Score=26.39 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCCeEEEecCChhHHHHhhcCCCEEEEecc
Q 017408 52 EVAVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLP 90 (372)
Q Consensus 52 ~v~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~ 90 (372)
.+.++|+.+|++.|=+..-.+..+.+|++.||+|..+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 678999999999998888889999999999999999877
No 67
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=30.82 E-value=71 Score=25.08 Aligned_cols=48 Identities=17% Similarity=0.103 Sum_probs=31.0
Q ss_pred CccEEEEEeccc-cccCC-------CcchHHHHHHHHHHHHHHHHhCCCCCCeEEEec
Q 017408 118 KTKICGIAVGNE-VLGGA-------DSELWGALLGAVKNVYNSIKKLHLDDVVQITTA 167 (372)
Q Consensus 118 ~~~I~~I~VGNE-vl~~~-------~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~ 167 (372)
+.+|.+-=|+|| ..... .......+.+.|+++-+.+|+.+-. .+||+.
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~--~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPS--QPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TT--S-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCC--CcEEee
Confidence 468999999999 55111 1123578999999999999987653 566654
No 68
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=30.19 E-value=71 Score=32.75 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=32.1
Q ss_pred HHHHHhCCCCeEEEecCChhHHHHhhcCCCEEEEecc
Q 017408 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLP 90 (372)
Q Consensus 54 ~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~ 90 (372)
.|.|+..|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6889999999999999999888899999999984444
No 69
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=29.98 E-value=68 Score=32.27 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=29.9
Q ss_pred HHHHHHhCCCCeEEEecCC-hhHHHHhhcCCCEEE
Q 017408 53 VAVLLRASKIKNVRIYDAD-HSVLKAFSGTGLELV 86 (372)
Q Consensus 53 v~~~lk~~~~~~VRiY~~d-~~vL~A~~~~gi~v~ 86 (372)
-.|+|+..|+++||+...+ |.=+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3688999999999999998 877788999999986
No 70
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=29.98 E-value=5.4e+02 Score=25.99 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=48.8
Q ss_pred CCCCeEEEecCC-------hhHHHHhhcCCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhcCCCccEEEEEecccccc
Q 017408 60 SKIKNVRIYDAD-------HSVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLG 132 (372)
Q Consensus 60 ~~~~~VRiY~~d-------~~vL~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~ 132 (372)
.|+++|||---| ..|+++++..|+.+=+||.-..++ . + -+..| ..
T Consensus 92 ~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~---~------~----~~~ky-g~-------------- 143 (346)
T TIGR00612 92 KGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLE---R------R----LLEKY-GD-------------- 143 (346)
T ss_pred hccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCc---H------H----HHHHc-CC--------------
Confidence 589999997322 258899999999999999855332 1 1 12222 11
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEe
Q 017408 133 GADSELWGALLGAVKNVYNSIKKLHLDDVVQITT 166 (372)
Q Consensus 133 ~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT 166 (372)
.+....+-++|++++ .|.+.|++ +|+||-
T Consensus 144 ---~t~eamveSAl~~v~-~le~~~F~-diviS~ 172 (346)
T TIGR00612 144 ---ATAEAMVQSALEEAA-ILEKLGFR-NVVLSM 172 (346)
T ss_pred ---CCHHHHHHHHHHHHH-HHHHCCCC-cEEEEE
Confidence 122234567788886 78899998 487775
No 71
>PRK08815 GTP cyclohydrolase; Provisional
Probab=29.89 E-value=71 Score=32.56 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=31.6
Q ss_pred HHHHHhCCCCeEEEecCChhHHHHhhcCCCEEEEecc
Q 017408 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLP 90 (372)
Q Consensus 54 ~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~ 90 (372)
.|.|+..|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6889999999999999999877889999999973343
No 72
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=29.88 E-value=81 Score=31.50 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=49.6
Q ss_pred hHHHHhhcCCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhcCCCccEEEEEeccccccCCCcchHHHHHHHHHHHHHH
Q 017408 73 SVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNS 152 (372)
Q Consensus 73 ~vL~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~a 152 (372)
.||+++...|-.+.+|=. ..+.+ +++.|..|+...+..++ ..|.+|+--|.-... .+ -.+
T Consensus 176 ~VLkp~idsGkik~~Ge~--~~d~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag----------Ga----I~a 235 (341)
T COG4213 176 KVLKPLIDSGKIKVVGEQ--WTDGW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG----------GA----IAA 235 (341)
T ss_pred HHHHHHhhCCceEEeeec--ccccc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH----------HH----HHH
Confidence 588888877744446633 22344 57788889888887776 348888776653322 11 246
Q ss_pred HHhCCCCCCeEEEec
Q 017408 153 IKKLHLDDVVQITTA 167 (372)
Q Consensus 153 L~~~gl~~~IkVsT~ 167 (372)
|++.||+++++||=-
T Consensus 236 L~a~Gl~g~vpVsGQ 250 (341)
T COG4213 236 LKAQGLAGKVPVSGQ 250 (341)
T ss_pred HHhcccCCCCcccCc
Confidence 888999988987653
No 73
>PRK09989 hypothetical protein; Provisional
Probab=29.87 E-value=4.6e+02 Score=24.40 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=38.1
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCeEEEec---CCh-hHHHHhhcCCCEEEE
Q 017408 36 YGINYGRIADNIPSPDEVAVLLRASKIKNVRIYD---ADH-SVLKAFSGTGLELVV 87 (372)
Q Consensus 36 ~GvnYg~~~~n~ps~~~v~~~lk~~~~~~VRiY~---~d~-~vL~A~~~~gi~v~l 87 (372)
+.+|.+.....+ |-++.++.+++.||+.|-+.. -+. ++.+.++++||++..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 456777666555 567888999999999999843 333 467778899999875
No 74
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=29.54 E-value=3.4e+02 Score=25.47 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=48.4
Q ss_pred CHHHHHHHHHhCCCCeEEEecCC--------hhHHHHhh-cCCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhcCCCc
Q 017408 49 SPDEVAVLLRASKIKNVRIYDAD--------HSVLKAFS-GTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKT 119 (372)
Q Consensus 49 s~~~v~~~lk~~~~~~VRiY~~d--------~~vL~A~~-~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~ 119 (372)
.|.++++.+.+.|++.+=+.|.| ..+++.+. ..+++|++|=-.. +.+.++.++..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGir-------s~edv~~~l~~--------- 96 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIR-------DDESLEAALAT--------- 96 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCC-------CHHHHHHHHHC---------
Confidence 78889999988999999999864 24676665 4689999975543 23344444431
Q ss_pred cEEEEEeccccccC
Q 017408 120 KICGIAVGNEVLGG 133 (372)
Q Consensus 120 ~I~~I~VGNEvl~~ 133 (372)
-...+.+|.+.+.+
T Consensus 97 Ga~kvviGs~~l~~ 110 (241)
T PRK14024 97 GCARVNIGTAALEN 110 (241)
T ss_pred CCCEEEECchHhCC
Confidence 23467899999864
No 75
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=29.40 E-value=74 Score=32.74 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=30.3
Q ss_pred HHHHHhCCCCeEEEecCChhHHHHhhcCCCEEE
Q 017408 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELV 86 (372)
Q Consensus 54 ~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~ 86 (372)
.+.|+..|+++||+.+.+|.=+.++.+.||+|.
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 688999999999999999987889999999997
No 76
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=29.22 E-value=2.2e+02 Score=23.31 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=24.7
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCeEEEe
Q 017408 36 YGINYGRIADNIPSPDEVAVLLRASKIKNVRIY 68 (372)
Q Consensus 36 ~GvnYg~~~~n~ps~~~v~~~lk~~~~~~VRiY 68 (372)
+-|+-...+...++.+++.+.|++.||..-++-
T Consensus 34 vqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~ 66 (101)
T PF13721_consen 34 VQISASSAGVQLPDAFQVEQALKAAGIAVKSIE 66 (101)
T ss_pred EEEecCCCCccCChHHHHHHHHHHCCCCcceEE
Confidence 336666666678888899999999988665554
No 77
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.12 E-value=3.2e+02 Score=25.92 Aligned_cols=70 Identities=19% Similarity=0.118 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC---------hhHHHHhhcCCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhcCCC
Q 017408 48 PSPDEVAVLLRASKIKNVRIYDAD---------HSVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPK 118 (372)
Q Consensus 48 ps~~~v~~~lk~~~~~~VRiY~~d---------~~vL~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~ 118 (372)
.+|-++++.+++.|++.+=+.|.| .++++.+++.=++|.+|=-.. +.+.++.|+..
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGIr-------s~e~~~~~l~~-------- 94 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGIR-------SLDYAEKLRKL-------- 94 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCCC-------CHHHHHHHHHC--------
Confidence 478899999999999999999865 247777765326777764433 34455566541
Q ss_pred ccEEEEEeccccccC
Q 017408 119 TKICGIAVGNEVLGG 133 (372)
Q Consensus 119 ~~I~~I~VGNEvl~~ 133 (372)
.+..|+||.+.+.+
T Consensus 95 -Ga~rvvigT~a~~~ 108 (241)
T PRK14114 95 -GYRRQIVSSKVLED 108 (241)
T ss_pred -CCCEEEECchhhCC
Confidence 24567899999864
No 78
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=28.73 E-value=2.6e+02 Score=27.21 Aligned_cols=94 Identities=13% Similarity=0.271 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCcccccccchhhhHHHHHHHhhcCCCceeccCccccccCCCCccc
Q 017408 145 AVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENID 224 (372)
Q Consensus 145 am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~~~~~~~i~ 224 (372)
+...+++..+..|+-+ +++.... ..+.| + .+.+.++..++.+.+-|+.++.=+..... .
T Consensus 114 a~~E~er~v~~~gf~g-~~l~p~~------~~~~~------~--~~~~~pi~~~a~~~gvpv~ihtG~~~~~~------~ 172 (293)
T COG2159 114 AAEELERRVRELGFVG-VKLHPVA------QGFYP------D--DPRLYPIYEAAEELGVPVVIHTGAGPGGA------G 172 (293)
T ss_pred HHHHHHHHHHhcCceE-EEecccc------cCCCC------C--ChHHHHHHHHHHHcCCCEEEEeCCCCCCc------c
Confidence 4456666666667643 4443221 11111 1 25578999999999999998654433221 1
Q ss_pred cccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHhCCCCCcceEeeee--cCCCCC
Q 017408 225 INYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTETG--WASRGD 282 (372)
Q Consensus 225 ~~~Alf~~~~~~~d~~~~~~y~nlfda~vDav~~a~~~~g~~~~~vvItETG--WPS~G~ 282 (372)
+....+ ++ - .+|-+. .-+|+++||+++.| +|..-.
T Consensus 173 ~~~~~~-------~p-------~----~~~~va-----~~fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 173 LEKGHS-------DP-------L----YLDDVA-----RKFPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred cccCCC-------Cc-------h----HHHHHH-----HHCCCCcEEEEecCCCCchhHH
Confidence 111000 10 0 122221 13899999999999 887654
No 79
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.73 E-value=3.8e+02 Score=24.39 Aligned_cols=128 Identities=9% Similarity=0.153 Sum_probs=58.2
Q ss_pred HHHHHHHHhCCCCeEEEecCC---------hhHHHHhhcCCCEEEE--eccCCcchhhccCHHHHHHHHHHhhhhcCCCc
Q 017408 51 DEVAVLLRASKIKNVRIYDAD---------HSVLKAFSGTGLELVV--GLPNGLVKEMSANESHAMDWVKENVQNFLPKT 119 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY~~d---------~~vL~A~~~~gi~v~l--Gv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~ 119 (372)
..+.+.|.++|.++|=+.+.. ....++++..|+++.+ ..+.....+.....+.+.+|++.+ +
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-- 170 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P-- 170 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C--
Confidence 455566666677777555422 1234566778877621 111111111111233444555432 2
Q ss_pred cEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHhCCC--CCCeEEEeceehhhhccCCCCCcccccccchhhhHHHHH
Q 017408 120 KICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHL--DDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLD 197 (372)
Q Consensus 120 ~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl--~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ld 197 (372)
.+++|...|+.+.. . +.++|++.|+ .++|.|.+-+.......-..|.......+....-..+++
T Consensus 171 ~~~ai~~~~d~~a~----------g----~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~~ 236 (265)
T cd01543 171 KPVGIFACTDARAR----------Q----LLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAAK 236 (265)
T ss_pred CCcEEEecChHHHH----------H----HHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHHH
Confidence 25677777655421 1 2234555665 356776665544332222234334444332222234444
Q ss_pred HH
Q 017408 198 FF 199 (372)
Q Consensus 198 fl 199 (372)
.|
T Consensus 237 ~l 238 (265)
T cd01543 237 LL 238 (265)
T ss_pred HH
Confidence 44
No 80
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.39 E-value=4.9e+02 Score=24.20 Aligned_cols=88 Identities=20% Similarity=0.349 Sum_probs=54.2
Q ss_pred CHHHHHHHHHhCCCCeEEEecCC---hhHHHHhhc--CCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhcCCCccEEE
Q 017408 49 SPDEVAVLLRASKIKNVRIYDAD---HSVLKAFSG--TGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKTKICG 123 (372)
Q Consensus 49 s~~~v~~~lk~~~~~~VRiY~~d---~~vL~A~~~--~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~ 123 (372)
|++|+.+.++ .|.+.|++|-++ +.-++++++ .+++++. ...+ +.+.+.+|++ ..+.+
T Consensus 118 T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGGI-----~~~N~~~~l~---------aGa~~ 179 (213)
T PRK06552 118 TVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGGV-----NLDNVKDWFA---------AGADA 179 (213)
T ss_pred CHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECCC-----CHHHHHHHHH---------CCCcE
Confidence 8888887765 589999999544 566777775 3466652 2222 2345556664 24678
Q ss_pred EEeccccccCCCcchHHHHHHHHHHHHHHHH
Q 017408 124 IAVGNEVLGGADSELWGALLGAVKNVYNSIK 154 (372)
Q Consensus 124 I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~ 154 (372)
|.||...+.......++.+-...++++++++
T Consensus 180 vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 180 VGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 8999887643111124556666666665554
No 81
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=28.37 E-value=77 Score=33.13 Aligned_cols=37 Identities=24% Similarity=0.475 Sum_probs=31.7
Q ss_pred HHHHHhCCCCeEEEecCChhHHHHhhcCCCEEEEecc
Q 017408 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLP 90 (372)
Q Consensus 54 ~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~ 90 (372)
.|.|+..|+++||+.+.+|.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6889999999999999999888899999999973333
No 82
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=28.36 E-value=77 Score=27.94 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=18.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhc
Q 017408 1 MKKSLRFFLRFHLLLFFSVFFTLI 24 (372)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (372)
|.|+++..+|+.+.+++.+++++.
T Consensus 1 ~~kf~~~~~~~~~a~~~~~~~~a~ 24 (146)
T PF10916_consen 1 MKKFAKKNVRLILAAAIGISVFAF 24 (146)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999888886666665643
No 83
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=28.04 E-value=79 Score=33.92 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=32.4
Q ss_pred HHHHHhCCCCeEEEecCChhHHHHhhcCCCEEEEecc
Q 017408 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLP 90 (372)
Q Consensus 54 ~~~lk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~ 90 (372)
.++|+..|+++||+...+|.=+.++.+.||+|.==++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6889999999999999999888999999999874444
No 84
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.70 E-value=6.8e+02 Score=25.62 Aligned_cols=77 Identities=9% Similarity=0.094 Sum_probs=43.8
Q ss_pred EEEEEeccccccC------CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCcccccccchhhhHH
Q 017408 121 ICGIAVGNEVLGG------ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKP 194 (372)
Q Consensus 121 I~~I~VGNEvl~~------~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~ 194 (372)
..++.+|=|-... +......+...+++.+|+.+ ..+.|+|.. ++ +|| .+....+..
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~------~~i~i~~d~---Iv--GfP-------gET~edf~~ 311 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV------PDASISSDI---IV--GFP-------TETEEDFME 311 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCCEEEEEE---EE--ECC-------CCCHHHHHH
Confidence 4567777665421 01223567777777777652 125566542 11 343 123466788
Q ss_pred HHHHHhhcCCCceeccCccccc
Q 017408 195 LLDFFSQIGSPFCLNVYPFLAY 216 (372)
Q Consensus 195 ~ldfl~~~~sp~~vNiyPyf~~ 216 (372)
.++|+.+.+- -.+++++|-..
T Consensus 312 tl~fi~~~~~-~~~~~~~~sp~ 332 (434)
T PRK14330 312 TVDLVEKAQF-ERLNLAIYSPR 332 (434)
T ss_pred HHHHHHhcCC-CEEeeeeccCC
Confidence 8999887653 35677777654
No 85
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=27.53 E-value=1.2e+02 Score=25.93 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHhCCCCeEEEecCC-----hhHHHHhhcCCCEEEEeccC
Q 017408 47 IPSPDEVAVLLRASKIKNVRIYDAD-----HSVLKAFSGTGLELVVGLPN 91 (372)
Q Consensus 47 ~ps~~~v~~~lk~~~~~~VRiY~~d-----~~vL~A~~~~gi~v~lGv~~ 91 (372)
..+++++++..++.|++.|=+=|-+ +.-.+.++..||++++|+-.
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 3488999999999999999888753 34556677799999999885
No 86
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=27.31 E-value=1.2e+02 Score=25.76 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCeEEEec----------CC---hhHHHHhhcCCCEEEE
Q 017408 51 DEVAVLLRASKIKNVRIYD----------AD---HSVLKAFSGTGLELVV 87 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY~----------~d---~~vL~A~~~~gi~v~l 87 (372)
+++.+.++.+|++.|+++- +. ...|++++..||+|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 4556677788999888883 33 3589999999999753
No 87
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=27.30 E-value=1.1e+02 Score=23.34 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhhcCCCccEEEEEeccccccCC--CcchHHHHHHHHHHHHHHHHh
Q 017408 103 HAMDWVKENVQNFLPKTKICGIAVGNEVLGGA--DSELWGALLGAVKNVYNSIKK 155 (372)
Q Consensus 103 ~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~~~--~~~~~~~Lv~am~~v~~aL~~ 155 (372)
.-.+|+++||.- |+|.++.+ +.+....|+|+++..++.++.
T Consensus 12 iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~ 54 (65)
T PF06117_consen 12 ILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRP 54 (65)
T ss_pred HHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHH
Confidence 345799988743 33444432 233467899999999988875
No 88
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=27.05 E-value=6.6e+02 Score=25.80 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=47.9
Q ss_pred hHHHHhhcCCCEEEEeccCCcc----------------hhhccC-HHHHHHHHHHhhhhcC-CCccEEEEEeccccccCC
Q 017408 73 SVLKAFSGTGLELVVGLPNGLV----------------KEMSAN-ESHAMDWVKENVQNFL-PKTKICGIAVGNEVLGGA 134 (372)
Q Consensus 73 ~vL~A~~~~gi~v~lGv~~~~~----------------~~~a~~-~~~a~~wv~~~i~~~~-~~~~I~~I~VGNEvl~~~ 134 (372)
..|+++++.|++.+++.-|.-- ..+..+ .++-...+.+-++-|- -+..|++|.-=||+-..+
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 3788888899988887665310 011111 1111222322222220 136899999999998653
Q ss_pred C-----c--chHHHHHHHHHHHHHHHHhCCCCCCeEEEecee
Q 017408 135 D-----S--ELWGALLGAVKNVYNSIKKLHLDDVVQITTAHS 169 (372)
Q Consensus 135 ~-----~--~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~ 169 (372)
. + -...+....|+.++++|++.||..+ |..+++
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~--I~~~Ea 227 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK--ISACEA 227 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-E--EEEEEE
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce--EEecch
Confidence 1 1 1367888999999999999999754 555554
No 89
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=27.01 E-value=1.4e+02 Score=26.00 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCeEEEe--c--------CC---hhHHHHhhcCCCEEEE
Q 017408 51 DEVAVLLRASKIKNVRIY--D--------AD---HSVLKAFSGTGLELVV 87 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY--~--------~d---~~vL~A~~~~gi~v~l 87 (372)
+++.+.++.+|++.|+++ + .. ..+|++++..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 455677778999999888 3 33 3589999999999753
No 90
>CHL00041 rps11 ribosomal protein S11
Probab=26.48 E-value=1.5e+02 Score=24.99 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCCeEEEec--CC---hhHHHHhhcCCCEEE
Q 017408 52 EVAVLLRASKIKNVRIYD--AD---HSVLKAFSGTGLELV 86 (372)
Q Consensus 52 ~v~~~lk~~~~~~VRiY~--~d---~~vL~A~~~~gi~v~ 86 (372)
++.+.+++.|++.|+++= .. ..++++++..|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 445667778999999883 32 458999999999875
No 91
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.27 E-value=6e+02 Score=24.56 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=76.8
Q ss_pred ccCCCCCcccccccchhhhHHHHHHHhhcCCCceeccCccccccCCCCccccccccccCCC-------ccccCCCcccch
Q 017408 174 ANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQ-------GIDDSKTKLHYD 246 (372)
Q Consensus 174 ~~s~pPS~g~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~~~~~~~i~~~~Alf~~~~-------~~~d~~~~~~y~ 246 (372)
...+|...|.+.++..+.+++++|.+.+.++.+++-+..- +.......... ....|+. ......|.-.-.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~--G~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~mt~~ei~ 137 (327)
T cd02803 61 GKGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA--GRQAQPNLTGG-PPPAPSAIPSPGGGEPPREMTKEEIE 137 (327)
T ss_pred ccCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC--CcCCCCcCCCC-CccCCCCCCCCCCCCCCCcCCHHHHH
Confidence 3457777888888878999999999999999888776431 11110000000 0000000 000111111233
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcceEeeee-------cCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhhcC
Q 017408 247 NMLDAQIDAAYAALEDAGFKKMEVIVTETG-------WASRG-DSNEAAATVDNARTYNYNLRKRLAKKKG 309 (372)
Q Consensus 247 nlfda~vDav~~a~~~~g~~~~~vvItETG-------WPS~G-~~~~~~as~~na~~y~~~li~~~~~~~G 309 (372)
.+.+...++...|. ++||.+++|..+ -| .|..- ...+-+.|.+|-.+|..+.++.+++..|
T Consensus 138 ~~i~~~~~aA~~a~-~aGfDgveih~~-~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g 206 (327)
T cd02803 138 QIIEDFAAAARRAK-EAGFDGVEIHGA-HGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVG 206 (327)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEcch-hhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcC
Confidence 45555556665554 479999999875 23 35321 1223467899999999999999986654
No 92
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.75 E-value=6.6e+02 Score=25.65 Aligned_cols=60 Identities=10% Similarity=0.187 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCcccccccchhhhHHHHHHHhhcCCCceeccCccccc
Q 017408 138 LWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAY 216 (372)
Q Consensus 138 ~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~ 216 (372)
...++..+++.+|+++. .+.++|.. +. +|| .+....+...++|+.+.+ +-.+|+++|-..
T Consensus 257 ~~~~~~~~i~~lr~~~p------gi~i~~d~----Iv-GfP-------GET~edf~~tl~fi~~~~-~~~~~v~~ysp~ 316 (418)
T PRK14336 257 TNQQYRELVERLKTAMP------DISLQTDL----IV-GFP-------SETEEQFNQSYKLMADIG-YDAIHVAAYSPR 316 (418)
T ss_pred CHHHHHHHHHHHHhhCC------CCEEEEEE----EE-ECC-------CCCHHHHHHHHHHHHhcC-CCEEEeeecCCC
Confidence 36778888888876531 25455542 21 344 122456788889988754 345778777643
No 93
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=25.59 E-value=2.2e+02 Score=28.10 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=28.7
Q ss_pred HHHHhCCCCeEEEecCChh-HHHHhhcCCCEEEEeccCCc
Q 017408 55 VLLRASKIKNVRIYDADHS-VLKAFSGTGLELVVGLPNGL 93 (372)
Q Consensus 55 ~~lk~~~~~~VRiY~~d~~-vL~A~~~~gi~v~lGv~~~~ 93 (372)
+.|+..|.+. .+-..|.. ..+++++-.+.++++.|...
T Consensus 52 ~iLk~~Gy~v-~~~~~~~~~~~~sla~gd~D~~~~~W~p~ 90 (302)
T COG2113 52 KILKGLGYTV-ELVTLDTAVMYQSLAKGDLDVFPEAWLPT 90 (302)
T ss_pred HHHHhCCCcc-eeeeccHHHHHHHHHcCCCccccceecCC
Confidence 4668888755 66666654 66888989999999999753
No 94
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=24.78 E-value=1.3e+02 Score=25.07 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCeEEEe--cCC---hhHHHHhhcCCCEEEE
Q 017408 52 EVAVLLRASKIKNVRIY--DAD---HSVLKAFSGTGLELVV 87 (372)
Q Consensus 52 ~v~~~lk~~~~~~VRiY--~~d---~~vL~A~~~~gi~v~l 87 (372)
.+.+.++..|++.|+++ +.. ..+|++++..|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 44566677899999998 333 3689999999998754
No 95
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.66 E-value=8e+02 Score=25.42 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=69.0
Q ss_pred CCCHHHHHHHH---HhCCCCeEEEecCC--------------hhHHHHhhc-CCC-EEEEeccCCcchhhccCHHHHHHH
Q 017408 47 IPSPDEVAVLL---RASKIKNVRIYDAD--------------HSVLKAFSG-TGL-ELVVGLPNGLVKEMSANESHAMDW 107 (372)
Q Consensus 47 ~ps~~~v~~~l---k~~~~~~VRiY~~d--------------~~vL~A~~~-~gi-~v~lGv~~~~~~~~a~~~~~a~~w 107 (372)
.-++++|++.+ ...|++.|.+.+.+ .++|+++.+ .|+ ++-++..+. ..+ +.+.
T Consensus 183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p--~~i--~~el---- 254 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHP--AWM--TDRL---- 254 (459)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecCh--hhc--CHHH----
Confidence 34677776544 44689999988721 136677766 354 343332211 111 1111
Q ss_pred HHHhhhhcCCCccEEEEEecccc----ccC--CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCc
Q 017408 108 VKENVQNFLPKTKICGIAVGNEV----LGG--ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSS 181 (372)
Q Consensus 108 v~~~i~~~~~~~~I~~I~VGNEv----l~~--~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~ 181 (372)
.+.+... + ..+..+.+|=|- +.+ +......+.+.+++.+|+.+ ..+.+++.. +. ++|
T Consensus 255 -l~~l~~~-~-~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~------pgi~i~~d~----Iv-G~P--- 317 (459)
T PRK14338 255 -IHAVARL-P-KCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAI------PDVSLTTDI----IV-GHP--- 317 (459)
T ss_pred -HHHHhcc-c-ccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhC------CCCEEEEEE----EE-ECC---
Confidence 1122221 1 124455554333 221 11234677777777777642 124455432 21 233
Q ss_pred ccccccchhhhHHHHHHHhhcCCCceeccCcccc
Q 017408 182 CIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLA 215 (372)
Q Consensus 182 g~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~ 215 (372)
.+....+...++|+.+.+ +-.+++++|-.
T Consensus 318 ----gET~ed~~~ti~~l~~l~-~~~v~i~~ysp 346 (459)
T PRK14338 318 ----GETEEQFQRTYDLLEEIR-FDKVHIAAYSP 346 (459)
T ss_pred ----CCCHHHHHHHHHHHHHcC-CCEeEEEecCC
Confidence 122466788899988754 33467777753
No 96
>PRK05309 30S ribosomal protein S11; Validated
Probab=24.57 E-value=1.7e+02 Score=25.17 Aligned_cols=36 Identities=22% Similarity=0.463 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCeEEEec--CC---hhHHHHhhcCCCEEE
Q 017408 51 DEVAVLLRASKIKNVRIYD--AD---HSVLKAFSGTGLELV 86 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY~--~d---~~vL~A~~~~gi~v~ 86 (372)
+.+.+.++..|++.|+++= .. ..+|++++..|++|.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 3455667778999999993 33 358999999999865
No 97
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=23.89 E-value=56 Score=28.28 Aligned_cols=31 Identities=35% Similarity=0.377 Sum_probs=21.5
Q ss_pred eEEecCCCCCCCCHHHHHHHHHhCCCCeEEEec
Q 017408 37 GINYGRIADNIPSPDEVAVLLRASKIKNVRIYD 69 (372)
Q Consensus 37 GvnYg~~~~n~ps~~~v~~~lk~~~~~~VRiY~ 69 (372)
|||-|. .|.-+..+..+.+...|++.||+|=
T Consensus 10 GINVGG--~nki~MaeLr~~l~~~Gf~~V~Tyi 40 (137)
T PF08002_consen 10 GINVGG--KNKIKMAELREALEDLGFTNVRTYI 40 (137)
T ss_dssp S-SBTT--BS---HHHHHHHHHHCT-EEEEEET
T ss_pred ceecCC--CCcccHHHHHHHHHHcCCCCceEEE
Confidence 676664 3656688999999999999999993
No 98
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=23.37 E-value=7.5e+02 Score=24.67 Aligned_cols=82 Identities=22% Similarity=0.237 Sum_probs=34.7
Q ss_pred HHHHhhcCCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhcC-----CCccEEEEEeccccccCCC--cchHHHHHHHH
Q 017408 74 VLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFL-----PKTKICGIAVGNEVLGGAD--SELWGALLGAV 146 (372)
Q Consensus 74 vL~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~-----~~~~I~~I~VGNEvl~~~~--~~~~~~Lv~am 146 (372)
+.+-+..+|++|+.|+..-.-.....+....-.|=-+|.+... .+=+|.+-=.|||.-..+- .-.+.++..-.
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 4455567999999998732100000011233467666654321 1235888889999754221 12367888888
Q ss_pred HHHHHHHHh
Q 017408 147 KNVYNSIKK 155 (372)
Q Consensus 147 ~~v~~aL~~ 155 (372)
..+|+.|+.
T Consensus 194 ~~Lr~il~~ 202 (319)
T PF03662_consen 194 IQLRKILNE 202 (319)
T ss_dssp ---HHHHHH
T ss_pred HHHHHHHHH
Confidence 888887765
No 99
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=23.18 E-value=98 Score=32.05 Aligned_cols=40 Identities=28% Similarity=0.353 Sum_probs=28.6
Q ss_pred HHHHH----HHHhCCCCeEEEecC--Ch----hHHHHhhcCCCEEEEecc
Q 017408 51 DEVAV----LLRASKIKNVRIYDA--DH----SVLKAFSGTGLELVVGLP 90 (372)
Q Consensus 51 ~~v~~----~lk~~~~~~VRiY~~--d~----~vL~A~~~~gi~v~lGv~ 90 (372)
++|++ ..-.+|++.+|+||+ |. ..++|++++|..+...+-
T Consensus 97 DDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 97 DDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred hHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEE
Confidence 55554 334489999999997 43 467888889887765544
No 100
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.14 E-value=7.1e+02 Score=24.31 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHhhcCCCceeccCcccc
Q 017408 189 DQFMKPLLDFFSQIGSPFCLNVYPFLA 215 (372)
Q Consensus 189 ~~~l~~~ldfl~~~~sp~~vNiyPyf~ 215 (372)
-|..+.+++-|.+.+--++++++||..
T Consensus 69 FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 69 FPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 467789999999999999999999975
No 101
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=22.93 E-value=91 Score=31.13 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=60.3
Q ss_pred CeEEEe--cC-------ChhHHHHhhcCCCEEEEeccCCcc-------hhhccCH----HHHHHHHHHhhh--hcCC---
Q 017408 63 KNVRIY--DA-------DHSVLKAFSGTGLELVVGLPNGLV-------KEMSANE----SHAMDWVKENVQ--NFLP--- 117 (372)
Q Consensus 63 ~~VRiY--~~-------d~~vL~A~~~~gi~v~lGv~~~~~-------~~~a~~~----~~a~~wv~~~i~--~~~~--- 117 (372)
..+|+| +| ..+.|.-++..|=++++||-.|+. +-+...+ -.+.+||..-|. ||.-
T Consensus 7 ~~~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyvtt~~ 86 (358)
T KOG2803|consen 7 RPVRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYVTTLE 86 (358)
T ss_pred CceeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCeeccHH
Confidence 567888 35 257787788999999999997631 1111111 256789987664 3321
Q ss_pred ---CccEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHhCC
Q 017408 118 ---KTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLH 157 (372)
Q Consensus 118 ---~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~g 157 (372)
.-...+|+=||......++...-.++..|..-|..-|..|
T Consensus 87 ~md~y~cd~vvHGdDit~~a~G~D~Y~~vK~agrykevKRT~G 129 (358)
T KOG2803|consen 87 WMDKYGCDYVVHGDDITLDADGLDCYRLVKAAGRYKEVKRTEG 129 (358)
T ss_pred HHHHhCCeEEEeCCcceecCCCccHHHHHHHhcchheeeeccC
Confidence 1257899999995544344445677777777765544444
No 102
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.27 E-value=3.8e+02 Score=26.08 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=28.2
Q ss_pred Cccccccc--chhhhHHHHHHHhhcCCCceeccCcccc
Q 017408 180 SSCIFKEG--VDQFMKPLLDFFSQIGSPFCLNVYPFLA 215 (372)
Q Consensus 180 S~g~F~~~--~~~~l~~~ldfl~~~~sp~~vNiyPyf~ 215 (372)
..|.|.-+ .-|.++++++-|.+.+--+++.+.||..
T Consensus 58 ~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~ 95 (303)
T cd06592 58 CYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFIN 95 (303)
T ss_pred cCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeC
Confidence 44556532 2377899999999999999999999875
No 103
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=21.69 E-value=4.6e+02 Score=24.41 Aligned_cols=69 Identities=23% Similarity=0.304 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhCCCCeEEEecCC--------hhHHHHhh-cCCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhcCCCc
Q 017408 49 SPDEVAVLLRASKIKNVRIYDAD--------HSVLKAFS-GTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKT 119 (372)
Q Consensus 49 s~~~v~~~lk~~~~~~VRiY~~d--------~~vL~A~~-~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~ 119 (372)
+|.++++.+++.|++.+=+.|.| ..+++.+. ..+++|.+|--... .+.++.++..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~-------~edv~~~l~~--------- 99 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRS-------LENAQEWLKR--------- 99 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCC-------HHHHHHHHHc---------
Confidence 68899999999999999999864 24666654 47899999876542 2333333321
Q ss_pred cEEEEEeccccccC
Q 017408 120 KICGIAVGNEVLGG 133 (372)
Q Consensus 120 ~I~~I~VGNEvl~~ 133 (372)
-...|++|.|.+.+
T Consensus 100 Ga~~viigt~~~~~ 113 (233)
T cd04723 100 GASRVIVGTETLPS 113 (233)
T ss_pred CCCeEEEcceeccc
Confidence 24567899999864
No 104
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.51 E-value=6.7e+02 Score=26.19 Aligned_cols=59 Identities=10% Similarity=0.225 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeceehhhhccCCCCCcccccccchhhhHHHHHHHhhcCCCceeccCccccc
Q 017408 139 WGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAY 216 (372)
Q Consensus 139 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfl~~~~sp~~vNiyPyf~~ 216 (372)
..+.+..++.+|++....-+..+|-| +||= +.-......+||+.... +=.+|++||=.-
T Consensus 279 ~e~~~~~i~k~R~~~Pd~~i~tDiIV-----------GFPg-------ETeedFe~tl~lv~e~~-fd~~~~F~YSpR 337 (437)
T COG0621 279 VEEYLEIIEKLRAARPDIAISTDIIV-----------GFPG-------ETEEDFEETLDLVEEVR-FDRLHVFKYSPR 337 (437)
T ss_pred HHHHHHHHHHHHHhCCCceEeccEEE-----------ECCC-------CCHHHHHHHHHHHHHhC-CCEEeeeecCCC
Confidence 66778888888877654433333333 3441 22244556777776544 446888888543
No 105
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=21.39 E-value=2.5e+02 Score=24.15 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=44.9
Q ss_pred HHHHHHhCCCCeEEEecC------C---h----hHHHHhhcCCCEEEEeccCCc---chhhc----cCHHHHHHHHHHhh
Q 017408 53 VAVLLRASKIKNVRIYDA------D---H----SVLKAFSGTGLELVVGLPNGL---VKEMS----ANESHAMDWVKENV 112 (372)
Q Consensus 53 v~~~lk~~~~~~VRiY~~------d---~----~vL~A~~~~gi~v~lGv~~~~---~~~~a----~~~~~a~~wv~~~i 112 (372)
..+.+++.|++.|=.|-+ . . .=++.+...|++|+. ||.+. ..... +....|.+-++.+.
T Consensus 9 ~~~~l~~aGy~~VgrYl~~~~~~~~~~~k~Lt~~e~~~i~~~Gl~i~p-Iyq~~~~~~~~~~~~~~~G~~dA~~A~~~A~ 87 (136)
T PF08924_consen 9 SAQALKAAGYRAVGRYLSGSRGGCAMRQKNLTAGEVQDIRAAGLRIFP-IYQGGGRETSDFTYGYAQGVADARDAVAAAR 87 (136)
T ss_dssp HHHHHHHT---SEEEESS-BTTTB-----B--HHHHHHHHHTT-EEEE-EE--------S-B--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEcCCCCCCcccccCCCCHHHHHHHHHCCCEEEE-EEecccccccccccHHHHHHHHHHHHHHHHH
Confidence 345666777766666632 1 1 124566678888765 44431 11121 22344444455544
Q ss_pred hhcCCCccEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHhCCC
Q 017408 113 QNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHL 158 (372)
Q Consensus 113 ~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl 158 (372)
.--.|...+.+..|= ..... ....+.++|+++-+.+.|...|+
T Consensus 88 ~lG~p~gt~IYfavD-~d~~~--~~~~~~i~~Y~~g~~~~l~~~gY 130 (136)
T PF08924_consen 88 ALGFPAGTPIYFAVD-YDATD--AECDSAILPYFRGWNSALGASGY 130 (136)
T ss_dssp HTT--SS-EEEEE---TS-B---HH-------HHHHHHHHHGGGT-
T ss_pred HcCCCCCCEEEEEee-cCCCc--hhhhhHHHHHHHHHHHHHhhCCC
Confidence 444576667788886 22222 23467899999999999998776
No 106
>PRK03941 NTPase; Reviewed
Probab=21.06 E-value=6.3e+02 Score=22.93 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=39.9
Q ss_pred CEEEEeccCCcchhhccCHHHHHHHHHHhhhhcCCCccEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHh
Q 017408 83 LELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKK 155 (372)
Q Consensus 83 i~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~ 155 (372)
|+|.+|--|. ...+ -+++.+..+.|+..|.++.|=+.|=.. ... .+.+..|+++++.+|+.
T Consensus 1 m~V~VGS~NP---------vKi~-Av~~af~~~~~~~~v~~v~v~SgV~~Q-P~g-eET~~GA~nRA~~A~~~ 61 (174)
T PRK03941 1 MKVAVGSTNP---------VKVE-AVENVFGKIFDDVEVVGVEVDSGVPDQ-PFG-EETVKGAINRAKNAYSP 61 (174)
T ss_pred CEEEEeCCCH---------HHHH-HHHHHHHHhCCCcEEEEecCCCCCCCC-CCC-HHHHHHHHHHHHHHHhc
Confidence 4677776653 1111 155555555676667777777666433 234 78999999999999985
No 107
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=20.77 E-value=1.4e+02 Score=31.37 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=26.0
Q ss_pred HHHHHhCCCCeEEEecC--Ch----hHHHHhhcCCCEEEEecc
Q 017408 54 AVLLRASKIKNVRIYDA--DH----SVLKAFSGTGLELVVGLP 90 (372)
Q Consensus 54 ~~~lk~~~~~~VRiY~~--d~----~vL~A~~~~gi~v~lGv~ 90 (372)
++....+|++.+|+||+ |. ..++++++.|..+.+.+-
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIA 153 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEE
Confidence 44556789999999985 32 355677889988654443
No 108
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=20.44 E-value=7.6e+02 Score=25.11 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=59.0
Q ss_pred HHHHHHHHhCCCCeEEEecC----------Ch------------hHHHHhhcCCCEEEEeccCC-------c----chhh
Q 017408 51 DEVAVLLRASKIKNVRIYDA----------DH------------SVLKAFSGTGLELVVGLPNG-------L----VKEM 97 (372)
Q Consensus 51 ~~v~~~lk~~~~~~VRiY~~----------d~------------~vL~A~~~~gi~v~lGv~~~-------~----~~~~ 97 (372)
++....+|+.||+.|||.-| +| ++++.+.+.||.|+|-+-.- + ...+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 56677889999999999854 22 24566778999999864321 1 1111
Q ss_pred cc---C-HHHHHHHHHHhhhhcC-CCccEEEEEeccccccCCCcchHHHH-HHHHHHHHHHHHhC
Q 017408 98 SA---N-ESHAMDWVKENVQNFL-PKTKICGIAVGNEVLGGADSELWGAL-LGAVKNVYNSIKKL 156 (372)
Q Consensus 98 a~---~-~~~a~~wv~~~i~~~~-~~~~I~~I~VGNEvl~~~~~~~~~~L-v~am~~v~~aL~~~ 156 (372)
.. + ......| ..|...+ ....|.++-+=||+..-.....+..- -++...|++.+...
T Consensus 156 ~~~~~~~~~~~~~w--~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 156 KEENENVEATIDIW--KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred cccchhHHHHHHHH--HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhc
Confidence 11 0 1222233 2233333 34678888889999840001123333 37777777665543
No 109
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=20.41 E-value=1.5e+02 Score=29.68 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHhCCCCeEEEecCC------hhHHHHhhcCCCEEEEeccC
Q 017408 47 IPSPDEVAVLLRASKIKNVRIYDAD------HSVLKAFSGTGLELVVGLPN 91 (372)
Q Consensus 47 ~ps~~~v~~~lk~~~~~~VRiY~~d------~~vL~A~~~~gi~v~lGv~~ 91 (372)
.|+++++.+++.... +.||+|... ..+++.+++.||.|.+|=-+
T Consensus 145 ~~~~~~~~~~~~~~~-~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 145 APDPEELKKWLEAAG-GLIKLVTLAPELDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred CcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCc
Confidence 367778878877643 678888643 35788889999999888543
No 110
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.38 E-value=6.1e+02 Score=23.32 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHhCCCCeEEEecCC---------hhHH-HHhhcCCCEEEEeccCCcchhhccCHHHHHHHHHHhhhhcCC
Q 017408 48 PSPDEVAVLLRASKIKNVRIYDAD---------HSVL-KAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLP 117 (372)
Q Consensus 48 ps~~~v~~~lk~~~~~~VRiY~~d---------~~vL-~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~ 117 (372)
.+|.++++.+.+.|++.+=+.+.+ ...+ +.++..++++++|=-.. +.+.++.|+.
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~-------~~~~~~~~~~-------- 96 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIR-------SAEDAASLLD-------- 96 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcC-------CHHHHHHHHH--------
Confidence 467888888888899888777653 1234 44456889999853332 2334444443
Q ss_pred CccEEEEEeccccccC
Q 017408 118 KTKICGIAVGNEVLGG 133 (372)
Q Consensus 118 ~~~I~~I~VGNEvl~~ 133 (372)
.....|+||++.+.+
T Consensus 97 -~Ga~~v~iGs~~~~~ 111 (241)
T PRK13585 97 -LGVDRVILGTAAVEN 111 (241)
T ss_pred -cCCCEEEEChHHhhC
Confidence 234578999999754
No 111
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.12 E-value=76 Score=29.18 Aligned_cols=27 Identities=37% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCCHHHHHHHH----HhCCCCeEEEecCChh
Q 017408 47 IPSPDEVAVLL----RASKIKNVRIYDADHS 73 (372)
Q Consensus 47 ~ps~~~v~~~l----k~~~~~~VRiY~~d~~ 73 (372)
.-+|.+|++-| |+.|++.|||-++.|.
T Consensus 73 f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~ 103 (228)
T COG5014 73 FLSPEEVAERLLEISKKRGCDLVRISGAEPI 103 (228)
T ss_pred ccCHHHHHHHHHHHHHhcCCcEEEeeCCCcc
Confidence 44889998766 8899999999998763
No 112
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=20.11 E-value=1.4e+02 Score=32.42 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=28.5
Q ss_pred HHHHHH----HHHhCCCCeEEEecC--Ch----hHHHHhhcCCCEEEEecc
Q 017408 50 PDEVAV----LLRASKIKNVRIYDA--DH----SVLKAFSGTGLELVVGLP 90 (372)
Q Consensus 50 ~~~v~~----~lk~~~~~~VRiY~~--d~----~vL~A~~~~gi~v~lGv~ 90 (372)
|++|++ ....+|++.+|+||+ |. ..++++++.|..+...+-
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~ 144 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAIC 144 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEE
Confidence 456654 445689999999985 32 256777889987766543
Done!