Query 017409
Match_columns 372
No_of_seqs 273 out of 820
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:57:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.6 3E-16 1E-20 120.8 4.8 54 222-278 7-60 (63)
2 1gnf_A Transcription factor GA 99.6 3.3E-16 1.1E-20 113.7 4.3 43 222-267 4-46 (46)
3 2vut_I AREA, nitrogen regulato 99.6 3.3E-16 1.1E-20 112.3 3.7 41 223-266 2-42 (43)
4 4gat_A Nitrogen regulatory pro 99.6 1.1E-15 3.7E-20 118.7 4.3 52 222-276 9-60 (66)
5 2kae_A GATA-type transcription 99.4 3.1E-14 1.1E-18 112.0 3.0 46 222-269 8-53 (71)
6 4hc9_A Trans-acting T-cell-spe 99.4 2.2E-13 7.5E-18 115.8 4.5 53 223-278 60-112 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 1.4E-11 4.8E-16 104.7 5.5 46 222-270 5-50 (115)
8 3ogl_Q JAZ1 incomplete degron 96.2 0.0024 8.4E-08 39.2 2.3 18 151-168 4-21 (21)
9 3ogk_Q JAZ1 incomplete degron 96.2 0.0012 4.2E-08 40.9 0.9 19 153-171 1-19 (22)
10 2yrk_A Zinc finger homeobox pr 36.8 2.7 9.3E-05 31.4 -2.3 18 241-258 8-25 (55)
11 2ds5_A CLPX, ATP-dependent CLP 36.1 19 0.00063 26.2 2.1 32 223-256 12-43 (51)
12 1ovx_A ATP-dependent CLP prote 35.9 18 0.00061 27.9 2.1 33 223-257 19-51 (67)
13 2j9u_B VPS36, vacuolar protein 35.1 7.5 0.00026 30.7 -0.2 34 221-255 16-49 (76)
14 1pft_A TFIIB, PFTFIIBN; N-term 34.6 5.2 0.00018 28.1 -1.1 32 223-259 6-37 (50)
15 1dl6_A Transcription factor II 33.6 12 0.00042 27.4 0.8 32 223-259 12-43 (58)
16 2pk2_A Cyclin-T1, protein TAT; 33.0 9.1 0.00031 37.3 0.0 9 222-230 314-322 (358)
17 2ctu_A Zinc finger protein 483 28.1 19 0.00066 24.7 1.0 40 222-264 18-57 (73)
18 3cw2_K Translation initiation 26.8 23 0.00078 30.6 1.4 30 223-255 104-133 (139)
19 3h0g_L DNA-directed RNA polyme 25.0 16 0.00055 27.7 0.1 39 217-262 16-54 (63)
20 2owa_A Arfgap-like finger doma 24.3 51 0.0018 28.3 3.2 37 222-262 36-72 (138)
21 2lvu_A Zinc finger and BTB dom 29.7 16 0.00056 20.1 0.0 17 247-263 3-19 (26)
22 3cng_A Nudix hydrolase; struct 23.6 25 0.00085 30.0 1.1 30 223-254 4-33 (189)
23 1pcx_A Protein transport prote 22.4 24 0.0008 38.2 0.8 32 222-255 112-143 (810)
24 1nee_A EIF-2-beta, probable tr 22.0 24 0.00082 30.5 0.6 29 223-254 103-131 (138)
25 1m2v_B SEC24, protein transpor 21.7 25 0.00084 38.8 0.8 32 222-255 228-259 (926)
26 1w7p_D VPS36P, YLR417W; ESCRT- 21.7 19 0.00066 37.7 0.0 37 220-257 115-151 (566)
27 2d74_B Translation initiation 21.3 26 0.0009 30.6 0.8 30 223-255 105-134 (148)
28 2yrc_A Protein transport prote 21.3 24 0.00083 26.2 0.5 32 222-255 9-42 (59)
29 2iqj_A Stromal membrane-associ 21.2 60 0.002 27.7 3.0 37 222-262 27-63 (134)
30 2crw_A ARF GAP 3, ADP-ribosyla 20.9 60 0.002 28.3 3.0 37 222-262 29-65 (149)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.61 E-value=3e-16 Score=120.84 Aligned_cols=54 Identities=26% Similarity=0.529 Sum_probs=46.0
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCccCCCC
Q 017409 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQLE 278 (372)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~~~~~~~~~ 278 (372)
...|.+|+++ .||+||+||+|+ +|||||||+|++++..|+++.....|..+.+.
T Consensus 7 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk 60 (63)
T 3dfx_A 7 GTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 60 (63)
T ss_dssp TCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred CCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence 4689999995 699999999997 99999999999999999998877666655544
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.61 E-value=3.3e-16 Score=113.73 Aligned_cols=43 Identities=44% Similarity=0.852 Sum_probs=39.4
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 017409 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSK 267 (372)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk 267 (372)
...|.+|+++ .||+||+||+|+ +|||||||+|++++++|+++|
T Consensus 4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 3579999995 699999999996 999999999999999999875
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.60 E-value=3.3e-16 Score=112.27 Aligned_cols=41 Identities=46% Similarity=0.907 Sum_probs=38.0
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 017409 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLS 266 (372)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~s 266 (372)
..|++|+++ .||+||+||+|+ +|||||||+|++++++|+++
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 479999995 699999999997 99999999999999999875
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.57 E-value=1.1e-15 Score=118.71 Aligned_cols=52 Identities=37% Similarity=0.680 Sum_probs=45.0
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCccCC
Q 017409 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQ 276 (372)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~~~~~~~ 276 (372)
...|++|+++ .||+||+||.|. +|||||||+|++++++|++++....|..+.
T Consensus 9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~ 60 (66)
T 4gat_A 9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRN 60 (66)
T ss_dssp SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCC
T ss_pred CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccc
Confidence 4689999995 699999999996 999999999999999999988765554443
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.44 E-value=3.1e-14 Score=111.97 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=38.7
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCC
Q 017409 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGG 269 (372)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~ 269 (372)
...|+||+++ .||+||+||.+..+|||||||+|+++++.|+++...
T Consensus 8 ~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~ 53 (71)
T 2kae_A 8 SFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVN 53 (71)
T ss_dssp CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHH
T ss_pred CCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccch
Confidence 4689999995 699999965444499999999999999999976543
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.37 E-value=2.2e-13 Score=115.81 Aligned_cols=53 Identities=26% Similarity=0.562 Sum_probs=45.8
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCccCCCC
Q 017409 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQLE 278 (372)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~~~~~~~~~ 278 (372)
..|++|+++ .||+||+||+| ++|||||||||++++..|+++.....|..+...
T Consensus 60 ~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~ 112 (115)
T 4hc9_A 60 TSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 112 (115)
T ss_dssp CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred ccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhcccc
Confidence 589999995 69999999999 899999999999999999998877766655443
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.19 E-value=1.4e-11 Score=104.67 Aligned_cols=46 Identities=46% Similarity=0.806 Sum_probs=40.4
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCC
Q 017409 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGR 270 (372)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~ 270 (372)
.+.|.+|+++ .||+||+||+| .+|||||||+|+.++..|++.+.++
T Consensus 5 ~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKK 50 (115)
T 4hc9_A 5 GRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKR 50 (115)
T ss_dssp -CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCC
T ss_pred CCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhcccccccccccc
Confidence 4689999995 69999999999 7999999999999999999866543
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=96.23 E-value=0.0024 Score=39.17 Aligned_cols=18 Identities=61% Similarity=0.706 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhcccc.....
Q 017409 151 SRRIASLVRFREKRKERC..... 168 (372)
Q Consensus 151 s~R~asL~RfrEKRK~R~..... 168 (372)
..|++||+||.||||+|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 579999999999999973
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0012 Score=40.95 Aligned_cols=19 Identities=63% Similarity=0.737 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhcccccCC
Q 017409 153 RIASLVRFREKRKERCFDK 171 (372)
Q Consensus 153 R~asL~RfrEKRK~R~~~K 171 (372)
|++||+||.||||+|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5789999999999987664
No 10
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=36.81 E-value=2.7 Score=31.35 Aligned_cols=18 Identities=28% Similarity=0.875 Sum_probs=8.4
Q ss_pred CCCCCcccchHHHHHHHh
Q 017409 241 GPAGPRTLCNACGLMWAN 258 (372)
Q Consensus 241 GP~G~~~LCNACGl~~~~ 258 (372)
+|+||++-|.-||..|.-
T Consensus 8 ~~~~P~~eC~lC~vkYs~ 25 (55)
T 2yrk_A 8 GTDGTKPECTLCGVKYSA 25 (55)
T ss_dssp CCCCCCSCCTTTTCCCCS
T ss_pred CCCCCCccccccCccccc
Confidence 444444445555544433
No 11
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=36.06 E-value=19 Score=26.22 Aligned_cols=32 Identities=25% Similarity=0.643 Sum_probs=21.7
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHH
Q 017409 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256 (372)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~ 256 (372)
.+|+.||.+.......=.|| | ...|+.|=...
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~~ 43 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 43 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHHH
Confidence 47999998654444444565 3 58999996543
No 12
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=35.86 E-value=18 Score=27.89 Aligned_cols=33 Identities=24% Similarity=0.621 Sum_probs=22.4
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHH
Q 017409 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWA 257 (372)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~ 257 (372)
.+|+.||.+.......=.|| | ...|+.|=....
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c~ 51 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLCN 51 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHHHH
Confidence 47999998654444444565 3 589999975543
No 13
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=35.08 E-value=7.5 Score=30.73 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=25.5
Q ss_pred ccccccccccCCCCccccccCCCCCcccchHHHHH
Q 017409 221 VVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (372)
Q Consensus 221 ~~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (372)
..|.|..|... ..+|.+..--..+..-|-+||+.
T Consensus 16 ~tWVCpICsfs-N~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 16 STWVCPICMVS-NETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EEEECTTTCCE-EEESSCCCTTCSSCCBCTTTCCB
T ss_pred cceECcccccc-CcCccccCCCCCCCCcccccCcc
Confidence 37999999876 46777765444667789999974
No 14
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=34.63 E-value=5.2 Score=28.10 Aligned_cols=32 Identities=19% Similarity=0.585 Sum_probs=20.2
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhc
Q 017409 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK 259 (372)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~ 259 (372)
..|..|+. +++-.+--.| ...|..||+.|..+
T Consensus 6 ~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~ 37 (50)
T 1pft_A 6 KVCPACES----AELIYDPERG-EIVCAKCGYVIEEN 37 (50)
T ss_dssp CSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCC
T ss_pred EeCcCCCC----cceEEcCCCC-eEECcccCCccccc
Confidence 46888876 3444433334 68888888877543
No 15
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=33.60 E-value=12 Score=27.45 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=23.1
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhc
Q 017409 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK 259 (372)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~ 259 (372)
..|..|+. ++...+.-.| ...|..||+-+..+
T Consensus 12 ~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 12 VTCPNHPD----AILVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp CSBTTBSS----SCCEECSSSC-CEECTTTCCEECCS
T ss_pred ccCcCCCC----CceeEeCCCC-eEEeCCCCCEEecc
Confidence 47999986 3455555555 79999999988654
No 16
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=32.98 E-value=9.1 Score=37.27 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=0.0
Q ss_pred ccccccccc
Q 017409 222 VRRCQHCGV 230 (372)
Q Consensus 222 ~~~C~~Cg~ 230 (372)
.|.|.||-.
T Consensus 314 ~~~~~~~~~ 322 (358)
T 2pk2_A 314 ARPNYHCQL 322 (358)
T ss_dssp ---------
T ss_pred CccceecHH
Confidence 567888855
No 17
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.06 E-value=19 Score=24.73 Aligned_cols=40 Identities=18% Similarity=0.502 Sum_probs=27.3
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCC
Q 017409 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRD 264 (372)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~ 264 (372)
+..|..|+..-.....++. .....|..||..|..+..|+.
T Consensus 18 ~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~ 57 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNK 57 (73)
T ss_dssp EEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCC
T ss_pred CeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHHH
Confidence 4689999865333333444 446899999999987766554
No 18
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=26.83 E-value=23 Score=30.63 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=19.1
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHH
Q 017409 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (372)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (372)
-.|..|+.++ |-+-+++- ---.-|+|||-.
T Consensus 104 VlC~~C~sPd--T~l~k~~r-~~~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLD--TILKKEKK-SWYIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSC--CCSCSSCS-TTTSSCCC----
T ss_pred eECCCCCCcC--cEEEEeCC-eEEEEecCCCCC
Confidence 4799999975 77777652 224789999964
No 19
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.95 E-value=16 Score=27.74 Aligned_cols=39 Identities=31% Similarity=0.527 Sum_probs=24.3
Q ss_pred CcccccccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017409 217 RPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (372)
Q Consensus 217 ~~e~~~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (372)
.++.+.-.|..|+..- ... .+...-|..||-+.-.|.+.
T Consensus 16 ~~~~v~Y~C~~Cg~~~--~l~-----~~~~iRC~~CG~RILyK~Rt 54 (63)
T 3h0g_L 16 RPATMIYLCADCGARN--TIQ-----AKEVIRCRECGHRVMYKMRT 54 (63)
T ss_dssp ---CCCCBCSSSCCBC--CCC-----SSSCCCCSSSCCCCCBCCCC
T ss_pred CCCCeEEECCCCCCee--ecC-----CCCceECCCCCcEEEEEecC
Confidence 3334568999999842 222 23457899999877666443
No 20
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=24.30 E-value=51 Score=28.32 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=30.7
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017409 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (372)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (372)
...|..|+.. -|.|=.-..| ..+|-.|.-..+.-|.+
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 3589999984 6999999999 89999999888776543
No 21
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.69 E-value=16 Score=20.05 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=12.8
Q ss_pred ccchHHHHHHHhcCCCC
Q 017409 247 TLCNACGLMWANKGTLR 263 (372)
Q Consensus 247 ~LCNACGl~~~~~~~lr 263 (372)
..|..||..|.....|.
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLA 19 (26)
Confidence 46899999888766554
No 22
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=23.58 E-value=25 Score=30.01 Aligned_cols=30 Identities=27% Similarity=0.645 Sum_probs=23.3
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHH
Q 017409 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (372)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl 254 (372)
+.|..||.. .+....+|..+.+..|-.||.
T Consensus 4 ~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 4 KFCSQCGGE--VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CBCTTTCCB--CEEECCTTCSSCEEEETTTTE
T ss_pred ccCchhCCc--cccccccCCCCcceECCCCCC
Confidence 579999984 455566677777889999994
No 23
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=22.37 E-value=24 Score=38.20 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=27.6
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHH
Q 017409 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (372)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (372)
+.+|..|++ ..-|.++-...|.+..||-|+..
T Consensus 112 pvRC~~Cra--yiNPf~~~~~~g~~W~C~~C~~~ 143 (810)
T 1pcx_A 112 IVRCRRCRS--YMNPFVTFIEQGRRWRCNFCRLA 143 (810)
T ss_dssp CCBCTTTCC--BCCTTCEEETTTTEEECTTTCCE
T ss_pred CCccCCccC--EecCceEEeCCCCEEEccCCCCc
Confidence 468999999 46899988888999999999864
No 24
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=22.00 E-value=24 Score=30.46 Aligned_cols=29 Identities=31% Similarity=0.665 Sum_probs=20.9
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHH
Q 017409 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (372)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl 254 (372)
-.|..|+.++ |-+-+.+- ---.-|+|||-
T Consensus 103 VlC~~C~sPd--T~l~k~~r-~~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPD--TRIIREGR-ISLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCS--SCCEEETT-TTEEECSTTSC
T ss_pred EECCCCCCcC--cEEEEcCC-eEEEEccCCCC
Confidence 3699999975 77777652 22468999984
No 25
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=21.73 E-value=25 Score=38.80 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=27.7
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHH
Q 017409 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (372)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (372)
..+|..|++ ..-|.++-...|.+..||-|+..
T Consensus 228 pvRC~rCrA--YiNPf~~~~~~g~~W~CnfC~~~ 259 (926)
T 1m2v_B 228 IVRCRRCRS--YMNPFVTFIEQGRRWRCNFCRLA 259 (926)
T ss_dssp CCBCSSSCC--BCCTTCEEETTTTEEECTTTCCE
T ss_pred CCccCCccC--EecCceEEeCCCCEEEccCCCCC
Confidence 468999999 46899988888999999999864
No 26
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=21.67 E-value=19 Score=37.67 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=0.0
Q ss_pred cccccccccccCCCCccccccCCCCCcccchHHHHHHH
Q 017409 220 TVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWA 257 (372)
Q Consensus 220 ~~~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~ 257 (372)
...|.|..|..+ ..+|-..+--..+..-|-+||+.-.
T Consensus 115 ~~tWvC~ICsfs-N~~~~~f~~~~~~~p~C~~CGi~p~ 151 (566)
T 1w7p_D 115 VSTWVCPICMVS-NETQGEFTKDTLPTPICINCGVPAD 151 (566)
T ss_dssp --------------------------------------
T ss_pred ccceeccccccC-CCCCCCCCcccCCCCcccccCCCCc
Confidence 347999999986 4566554432345678999999753
No 27
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=21.30 E-value=26 Score=30.58 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=21.1
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHH
Q 017409 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (372)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (372)
-.|..|+.++ |-+-+.+ .---.-|+|||-.
T Consensus 105 VlC~~C~sPd--T~L~k~~-r~~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSPD--TKIIKRD-RFHFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCTT--CCCCBSS-SSBCCCCSSSCCC
T ss_pred EECCCCCCcC--cEEEEeC-CEEEEEecCCCCC
Confidence 4699999975 7777754 2224689999853
No 28
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=21.28 E-value=24 Score=26.17 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.2
Q ss_pred cccccc--cccCCCCccccccCCCCCcccchHHHHH
Q 017409 222 VRRCQH--CGVSENNTPAMRRGPAGPRTLCNACGLM 255 (372)
Q Consensus 222 ~~~C~~--Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (372)
..+|.. |++ ..-|.|+-...|++..||.|+.+
T Consensus 9 pvRC~r~~Cra--ylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 9 PVLCSRTTCRA--VLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp CCBCSCTTTCC--BCCTTSEEEGGGTEEECSSSCCE
T ss_pred CcccCCCCCCe--EECCceEEECCCCEEEcccCCCc
Confidence 568998 998 46999999888889999999854
No 29
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=21.17 E-value=60 Score=27.69 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=31.0
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017409 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (372)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (372)
...|..|+.. -|.|=.-..| ..+|-.|.-..+.-|.+
T Consensus 27 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 27 NKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 4689999985 6999999899 89999999888876653
No 30
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.86 E-value=60 Score=28.32 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=31.0
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017409 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (372)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (372)
...|..|+.. -|.|=.-..| ..+|-.|--..+.-|.+
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 29 NKVCFDCGAK---NPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TSBCSSSCCB---SCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCcEEeccC-EEEchhcchhhccCCCC
Confidence 3589999984 7999999889 89999999888876653
Done!