Query 017410
Match_columns 372
No_of_seqs 164 out of 1556
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:19:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0022 AcoB Pyruvate/2-oxoglu 100.0 6.8E-72 1.5E-76 522.6 30.2 316 39-355 1-320 (324)
2 CHL00144 odpB pyruvate dehydro 100.0 9.2E-70 2E-74 529.9 35.4 315 38-355 2-321 (327)
3 PRK09212 pyruvate dehydrogenas 100.0 4.3E-69 9.4E-74 525.6 36.0 317 38-356 2-322 (327)
4 COG3958 Transketolase, C-termi 100.0 1.1E-69 2.4E-74 504.4 29.8 298 37-356 4-311 (312)
5 PLN02683 pyruvate dehydrogenas 100.0 8.8E-69 1.9E-73 527.9 36.4 320 35-355 22-348 (356)
6 PTZ00182 3-methyl-2-oxobutanat 100.0 1.5E-68 3.3E-73 526.0 35.7 320 35-355 30-353 (355)
7 PRK11892 pyruvate dehydrogenas 100.0 2.6E-68 5.7E-73 538.8 35.7 320 35-356 137-461 (464)
8 PLN02225 1-deoxy-D-xylulose-5- 100.0 1.3E-62 2.9E-67 512.0 34.9 302 39-356 380-689 (701)
9 COG1154 Dxs Deoxyxylulose-5-ph 100.0 1.6E-61 3.5E-66 486.8 32.0 301 37-356 313-621 (627)
10 KOG0524 Pyruvate dehydrogenase 100.0 2.3E-61 4.9E-66 441.9 24.4 346 6-354 2-355 (359)
11 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 6.7E-60 1.4E-64 494.9 34.7 300 38-356 308-615 (617)
12 PLN02582 1-deoxy-D-xylulose-5- 100.0 1.9E-59 4.2E-64 491.3 34.7 301 39-356 355-665 (677)
13 PRK12315 1-deoxy-D-xylulose-5- 100.0 6.9E-58 1.5E-62 477.0 33.0 294 39-356 277-579 (581)
14 PRK12571 1-deoxy-D-xylulose-5- 100.0 1.2E-57 2.6E-62 479.3 34.2 301 39-356 318-626 (641)
15 KOG0525 Branched chain alpha-k 100.0 2.2E-58 4.8E-63 416.9 20.1 342 2-351 3-353 (362)
16 PRK05444 1-deoxy-D-xylulose-5- 100.0 5.4E-56 1.2E-60 463.9 32.9 292 40-356 279-579 (580)
17 PLN02234 1-deoxy-D-xylulose-5- 100.0 1.3E-55 2.9E-60 458.9 33.2 263 39-318 356-623 (641)
18 PRK12753 transketolase; Review 100.0 1E-47 2.2E-52 405.2 29.4 289 36-356 351-662 (663)
19 TIGR00232 tktlase_bact transke 100.0 1.1E-47 2.4E-52 404.9 27.7 288 36-356 345-652 (653)
20 PRK05899 transketolase; Review 100.0 2E-47 4.3E-52 402.6 28.7 286 37-355 316-622 (624)
21 PLN02790 transketolase 100.0 1.9E-46 4E-51 395.7 30.3 291 36-356 340-653 (654)
22 PTZ00089 transketolase; Provis 100.0 8.7E-47 1.9E-51 398.6 26.3 285 36-356 351-657 (661)
23 KOG0523 Transketolase [Carbohy 100.0 1.2E-46 2.6E-51 377.3 22.7 297 35-356 314-624 (632)
24 PRK12754 transketolase; Review 100.0 5.2E-46 1.1E-50 390.5 26.0 292 37-356 352-662 (663)
25 PRK09405 aceE pyruvate dehydro 100.0 3.9E-43 8.5E-48 373.3 31.2 310 35-367 490-876 (891)
26 TIGR03186 AKGDH_not_PDH alpha- 100.0 2.7E-43 5.9E-48 374.5 29.2 295 36-355 486-856 (889)
27 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 2.7E-42 5.8E-47 306.2 18.2 165 44-210 1-167 (167)
28 PRK13012 2-oxoacid dehydrogena 100.0 6.9E-40 1.5E-44 349.8 28.6 301 36-368 499-882 (896)
29 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.2E-38 2.5E-43 340.9 28.7 322 4-336 547-909 (929)
30 PRK09404 sucA 2-oxoglutarate d 100.0 2E-38 4.3E-43 340.4 27.6 320 5-336 547-903 (924)
31 cd07033 TPP_PYR_DXS_TK_like Py 100.0 9.1E-36 2E-40 262.0 18.0 153 44-210 1-156 (156)
32 PF02779 Transket_pyr: Transke 100.0 1.5E-35 3.3E-40 265.9 15.7 168 38-215 1-177 (178)
33 COG0021 TktA Transketolase [Ca 100.0 2.4E-34 5.3E-39 291.8 23.5 295 37-356 351-661 (663)
34 smart00861 Transket_pyr Transk 100.0 1E-29 2.2E-34 225.8 16.3 155 41-210 1-166 (168)
35 PRK08659 2-oxoglutarate ferred 99.9 1.5E-21 3.2E-26 194.2 25.5 241 86-355 49-374 (376)
36 PRK07119 2-ketoisovalerate fer 99.9 4.3E-21 9.3E-26 189.4 28.3 217 81-313 45-319 (352)
37 PRK09627 oorA 2-oxoglutarate-a 99.9 2.9E-21 6.3E-26 191.7 25.1 240 86-355 48-374 (375)
38 TIGR03336 IOR_alpha indolepyru 99.9 3.9E-21 8.6E-26 202.0 25.9 259 76-359 35-338 (595)
39 PF02780 Transketolase_C: Tran 99.9 3.4E-24 7.3E-29 181.2 1.3 120 230-349 1-124 (124)
40 TIGR03710 OAFO_sf 2-oxoacid:ac 99.8 1.2E-19 2.7E-24 189.2 22.8 238 86-339 237-559 (562)
41 PRK08366 vorA 2-ketoisovalerat 99.8 2E-19 4.4E-24 179.3 22.9 235 91-338 54-363 (390)
42 PRK09622 porA pyruvate flavodo 99.8 1.6E-18 3.4E-23 174.3 25.2 241 56-315 26-344 (407)
43 PRK05261 putative phosphoketol 99.8 4.1E-18 8.9E-23 180.6 24.1 256 36-316 387-699 (785)
44 PRK08367 porA pyruvate ferredo 99.8 2.9E-17 6.2E-22 164.2 25.4 229 92-336 56-363 (394)
45 COG4231 Indolepyruvate ferredo 99.7 3.8E-16 8.2E-21 159.6 22.8 243 86-355 58-351 (640)
46 TIGR00759 aceE pyruvate dehydr 99.7 1.1E-14 2.3E-19 155.0 25.9 293 35-353 484-851 (885)
47 PRK12270 kgd alpha-ketoglutara 99.6 1.1E-14 2.4E-19 154.2 20.0 318 4-336 850-1206(1228)
48 COG0674 PorA Pyruvate:ferredox 99.6 2.3E-13 4.9E-18 135.1 22.0 237 86-338 48-354 (365)
49 TIGR02176 pyruv_ox_red pyruvat 99.5 2.6E-12 5.5E-17 143.7 23.9 217 87-316 53-347 (1165)
50 PRK13030 2-oxoacid ferredoxin 99.5 2.5E-12 5.5E-17 142.0 23.2 253 87-356 75-393 (1159)
51 KOG0451 Predicted 2-oxoglutara 99.5 2.5E-13 5.5E-18 136.0 13.0 319 4-336 524-892 (913)
52 COG2609 AceE Pyruvate dehydrog 99.5 1E-11 2.2E-16 127.7 22.5 230 35-279 487-766 (887)
53 PRK09193 indolepyruvate ferred 99.5 1.3E-11 2.9E-16 136.1 24.4 300 35-356 22-401 (1165)
54 KOG0450 2-oxoglutarate dehydro 99.4 7.7E-12 1.7E-16 128.1 16.1 302 5-315 613-971 (1017)
55 PRK13029 2-oxoacid ferredoxin 99.4 3.1E-11 6.7E-16 133.0 20.3 250 86-355 85-414 (1186)
56 cd06586 TPP_enzyme_PYR Pyrimid 99.4 1.5E-11 3.3E-16 106.6 13.9 119 81-210 31-154 (154)
57 COG0567 SucA 2-oxoglutarate de 99.3 6.4E-12 1.4E-16 133.4 10.4 300 3-314 527-864 (906)
58 COG3957 Phosphoketolase [Carbo 98.7 7.3E-07 1.6E-11 92.8 16.5 309 40-366 401-764 (793)
59 PF01855 POR_N: Pyruvate flavo 98.6 1.8E-07 4E-12 87.4 9.5 114 88-213 38-157 (230)
60 cd07034 TPP_PYR_PFOR_IOR-alpha 97.6 0.0037 8.1E-08 54.6 15.8 110 85-208 41-158 (160)
61 PF03894 XFP: D-xylulose 5-pho 97.5 0.0031 6.7E-08 56.1 14.1 151 44-199 2-178 (179)
62 cd07035 TPP_PYR_POX_like Pyrim 97.2 0.0045 9.8E-08 53.7 10.9 112 86-209 35-154 (155)
63 PF02776 TPP_enzyme_N: Thiamin 96.6 0.038 8.1E-07 49.0 12.2 117 86-214 40-165 (172)
64 PRK07525 sulfoacetaldehyde ace 95.9 0.29 6.3E-06 52.0 16.3 117 86-214 44-167 (588)
65 PRK08199 thiamine pyrophosphat 95.8 1.2 2.7E-05 46.8 20.3 117 87-215 48-172 (557)
66 PRK08322 acetolactate synthase 95.8 0.67 1.4E-05 48.6 18.1 118 86-215 39-164 (547)
67 cd07039 TPP_PYR_POX Pyrimidine 95.7 0.22 4.7E-06 44.0 12.2 113 87-211 40-159 (164)
68 PRK07586 hypothetical protein; 95.5 1.1 2.5E-05 46.6 18.5 199 87-297 41-270 (514)
69 TIGR03297 Ppyr-DeCO2ase phosph 95.5 0.092 2E-06 52.4 9.9 116 87-213 28-155 (361)
70 PRK12474 hypothetical protein; 95.3 2.6 5.6E-05 44.0 20.6 115 87-213 45-167 (518)
71 TIGR02418 acolac_catab acetola 95.3 0.37 8E-06 50.5 14.2 117 86-214 37-161 (539)
72 PRK07789 acetolactate synthase 95.3 3.1 6.7E-05 44.4 21.4 116 87-214 71-194 (612)
73 TIGR03457 sulphoacet_xsc sulfo 95.2 0.97 2.1E-05 47.9 16.9 117 87-215 41-164 (579)
74 PRK07092 benzoylformate decarb 95.1 1.7 3.7E-05 45.4 18.5 115 87-213 50-173 (530)
75 TIGR03845 sulfopyru_alph sulfo 95.0 0.25 5.4E-06 43.5 10.1 108 92-211 40-155 (157)
76 PRK07710 acetolactate synthase 95.0 0.62 1.3E-05 49.3 14.8 116 85-212 53-176 (571)
77 PRK06965 acetolactate synthase 94.9 0.57 1.2E-05 49.8 14.4 116 86-213 60-183 (587)
78 PRK07524 hypothetical protein; 94.9 0.63 1.4E-05 48.7 14.5 115 87-213 41-166 (535)
79 PRK08611 pyruvate oxidase; Pro 94.9 0.83 1.8E-05 48.4 15.4 117 87-215 45-168 (576)
80 PRK06048 acetolactate synthase 94.8 3.1 6.7E-05 43.9 19.3 116 86-213 46-169 (561)
81 cd07037 TPP_PYR_MenD Pyrimidin 94.7 0.41 8.9E-06 42.3 10.7 111 87-209 37-161 (162)
82 COG0028 IlvB Thiamine pyrophos 94.5 0.74 1.6E-05 48.6 13.9 118 86-215 40-165 (550)
83 TIGR00118 acolac_lg acetolacta 94.5 0.78 1.7E-05 48.3 14.1 115 87-213 41-163 (558)
84 PRK07418 acetolactate synthase 94.4 1.1 2.4E-05 47.8 15.3 117 86-214 61-185 (616)
85 PRK07979 acetolactate synthase 94.4 0.86 1.9E-05 48.2 14.1 115 87-213 44-166 (574)
86 PRK06457 pyruvate dehydrogenas 94.2 1.3 2.9E-05 46.5 15.1 116 87-214 41-163 (549)
87 TIGR01504 glyox_carbo_lig glyo 94.0 1.5 3.3E-05 46.6 15.0 115 87-213 43-166 (588)
88 cd07038 TPP_PYR_PDC_IPDC_like 93.9 1.1 2.5E-05 39.3 11.8 111 87-209 37-161 (162)
89 cd02001 TPP_ComE_PpyrDC Thiami 93.8 1.8 3.9E-05 37.9 12.8 109 85-206 35-150 (157)
90 PRK08155 acetolactate synthase 93.8 1.7 3.8E-05 45.8 15.1 116 86-213 52-175 (564)
91 PRK07282 acetolactate synthase 93.8 1.2 2.6E-05 47.1 13.8 115 87-213 50-172 (566)
92 PRK08617 acetolactate synthase 93.7 1.5 3.3E-05 46.1 14.3 116 86-213 43-166 (552)
93 PRK06725 acetolactate synthase 93.7 0.6 1.3E-05 49.4 11.2 116 86-213 53-176 (570)
94 PRK06466 acetolactate synthase 93.6 1.5 3.3E-05 46.3 14.3 116 86-213 43-166 (574)
95 PRK06456 acetolactate synthase 93.4 0.87 1.9E-05 48.1 12.1 115 87-213 45-167 (572)
96 PRK09107 acetolactate synthase 93.4 1.6 3.4E-05 46.6 13.9 116 86-213 50-173 (595)
97 PRK08266 hypothetical protein; 93.2 3.7 8E-05 43.0 16.2 116 86-213 44-170 (542)
98 PLN02470 acetolactate synthase 93.1 1.9 4.1E-05 45.8 14.1 115 86-212 52-174 (585)
99 PRK07064 hypothetical protein; 92.8 1.4 3E-05 46.2 12.4 115 87-213 43-168 (544)
100 PRK08979 acetolactate synthase 92.8 2.3 5E-05 45.0 14.1 116 86-213 43-166 (572)
101 PLN02573 pyruvate decarboxylas 92.6 1.9 4.1E-05 45.8 13.2 115 87-214 56-185 (578)
102 PRK08978 acetolactate synthase 92.5 1.2 2.6E-05 46.7 11.5 115 87-213 40-162 (548)
103 TIGR03254 oxalate_oxc oxalyl-C 92.3 1.4 3.1E-05 46.3 11.8 116 87-214 42-167 (554)
104 PRK05858 hypothetical protein; 92.2 4.9 0.00011 42.2 15.5 117 85-213 42-166 (542)
105 cd02014 TPP_POX Thiamine pyrop 92.1 3.7 8.1E-05 36.4 12.6 143 46-206 7-168 (178)
106 PRK08527 acetolactate synthase 92.1 1.9 4.1E-05 45.5 12.4 115 87-213 43-165 (563)
107 PRK06882 acetolactate synthase 92.0 1.9 4.1E-05 45.6 12.3 115 87-213 44-166 (574)
108 PRK11269 glyoxylate carboligas 91.8 4 8.6E-05 43.4 14.4 116 86-213 43-167 (591)
109 PRK09259 putative oxalyl-CoA d 91.8 1.8 3.9E-05 45.7 11.8 118 86-215 48-175 (569)
110 PRK06154 hypothetical protein; 91.6 3.8 8.3E-05 43.3 14.0 153 36-214 16-179 (565)
111 PRK06112 acetolactate synthase 91.3 2.5 5.5E-05 44.7 12.3 117 86-214 50-174 (578)
112 cd02004 TPP_BZL_OCoD_HPCL Thia 91.3 2.1 4.5E-05 37.7 9.9 110 85-206 38-167 (172)
113 PRK06276 acetolactate synthase 91.0 2.1 4.5E-05 45.5 11.4 115 87-213 40-162 (586)
114 CHL00099 ilvB acetohydroxyacid 90.8 2.8 6.1E-05 44.5 12.1 114 87-212 53-174 (585)
115 PRK08273 thiamine pyrophosphat 90.6 4.8 0.0001 42.9 13.7 116 86-214 43-167 (597)
116 TIGR02720 pyruv_oxi_spxB pyruv 90.6 3.3 7.2E-05 43.9 12.4 116 86-213 39-161 (575)
117 PRK07449 2-succinyl-5-enolpyru 90.6 3.6 7.7E-05 43.4 12.6 115 87-212 49-175 (568)
118 PRK06546 pyruvate dehydrogenas 90.5 3.1 6.6E-05 44.2 12.0 116 87-214 43-165 (578)
119 PRK09124 pyruvate dehydrogenas 90.2 6.1 0.00013 41.8 14.0 116 87-214 43-165 (574)
120 cd02010 TPP_ALS Thiamine pyrop 90.0 6.6 0.00014 34.9 12.1 110 85-206 38-165 (177)
121 PRK08327 acetolactate synthase 89.9 2.5 5.3E-05 44.8 10.7 115 87-213 52-183 (569)
122 PF09363 XFP_C: XFP C-terminal 89.6 1.8 3.8E-05 39.7 8.0 74 238-316 34-120 (203)
123 COG4032 Predicted thiamine-pyr 89.0 0.91 2E-05 39.2 5.3 112 88-210 43-163 (172)
124 TIGR03394 indol_phenyl_DC indo 88.8 9.1 0.0002 40.2 13.8 116 87-214 40-168 (535)
125 TIGR03393 indolpyr_decarb indo 88.4 9.7 0.00021 39.9 13.8 117 87-215 41-170 (539)
126 PRK11866 2-oxoacid ferredoxin 87.9 12 0.00025 36.2 12.8 144 42-206 18-187 (279)
127 PLN02980 2-oxoglutarate decarb 87.6 8.6 0.00019 46.0 14.1 113 87-210 341-466 (1655)
128 cd02009 TPP_SHCHC_synthase Thi 87.5 7.6 0.00016 34.4 10.6 110 85-206 41-170 (175)
129 cd02003 TPP_IolD Thiamine pyro 87.3 12 0.00027 33.9 12.2 35 171-206 145-179 (205)
130 PRK09628 oorB 2-oxoglutarate-a 86.9 13 0.00028 35.8 12.5 25 182-206 172-196 (277)
131 PRK11864 2-ketoisovalerate fer 86.9 9.9 0.00022 37.1 11.7 33 174-206 170-202 (300)
132 TIGR03846 sulfopy_beta sulfopy 86.8 21 0.00045 31.9 13.1 144 43-208 1-153 (181)
133 cd02013 TPP_Xsc_like Thiamine 85.5 9 0.00019 34.6 10.2 145 45-206 8-174 (196)
134 TIGR00173 menD 2-succinyl-5-en 85.3 5.6 0.00012 40.5 9.7 115 87-212 40-167 (432)
135 cd02002 TPP_BFDC Thiamine pyro 85.2 25 0.00055 30.8 13.1 35 171-206 140-174 (178)
136 COG0075 Serine-pyruvate aminot 84.3 3.8 8.2E-05 41.3 7.7 100 233-335 75-179 (383)
137 cd02015 TPP_AHAS Thiamine pyro 84.2 15 0.00033 32.7 11.0 144 46-206 6-169 (186)
138 cd03372 TPP_ComE Thiamine pyro 83.4 25 0.00054 31.3 12.0 143 44-208 2-152 (179)
139 PRK11865 pyruvate ferredoxin o 83.4 41 0.0009 32.8 14.2 33 174-206 174-206 (299)
140 cd03375 TPP_OGFOR Thiamine pyr 83.4 34 0.00073 30.8 13.3 25 182-206 155-179 (193)
141 cd03376 TPP_PFOR_porB_like Thi 82.4 43 0.00093 31.3 14.6 36 171-206 158-195 (235)
142 TIGR02177 PorB_KorB 2-oxoacid: 82.4 32 0.0007 33.3 13.0 141 42-206 12-181 (287)
143 cd00568 TPP_enzymes Thiamine p 80.2 10 0.00023 32.6 8.2 35 171-206 130-164 (168)
144 cd02018 TPP_PFOR Thiamine pyro 80.1 52 0.0011 30.7 14.3 36 171-206 160-198 (237)
145 TIGR03297 Ppyr-DeCO2ase phosph 79.8 70 0.0015 32.0 15.0 111 85-208 214-333 (361)
146 cd03028 GRX_PICOT_like Glutare 79.8 4.9 0.00011 31.5 5.4 68 237-310 6-82 (90)
147 COG1071 AcoA Pyruvate/2-oxoglu 79.4 9.4 0.0002 38.1 8.4 108 91-208 138-258 (358)
148 cd01481 vWA_collagen_alpha3-VI 78.5 6.1 0.00013 34.7 6.2 55 241-298 110-164 (165)
149 PF02775 TPP_enzyme_C: Thiamin 77.3 21 0.00045 30.5 9.1 109 85-206 18-151 (153)
150 cd03027 GRX_DEP Glutaredoxin ( 76.6 8.6 0.00019 28.5 5.7 67 240-309 2-69 (73)
151 cd02006 TPP_Gcl Thiamine pyrop 76.5 16 0.00034 33.1 8.4 144 46-206 13-189 (202)
152 PRK08617 acetolactate synthase 76.4 27 0.00058 36.7 11.3 35 171-206 497-531 (552)
153 PRK08155 acetolactate synthase 76.2 20 0.00043 37.8 10.3 109 85-206 409-538 (564)
154 cd02007 TPP_DXS Thiamine pyrop 76.0 46 0.00099 30.1 11.4 98 96-208 78-187 (195)
155 TIGR00118 acolac_lg acetolacta 76.0 25 0.00053 37.0 11.0 144 45-206 367-531 (558)
156 PRK11867 2-oxoglutarate ferred 75.5 47 0.001 32.1 11.9 26 181-206 172-197 (286)
157 KOG1185 Thiamine pyrophosphate 75.5 74 0.0016 33.2 13.5 119 80-211 47-173 (571)
158 cd00860 ThrRS_anticodon ThrRS 74.8 18 0.00039 27.5 7.3 59 240-300 3-62 (91)
159 PRK06048 acetolactate synthase 74.8 32 0.00069 36.3 11.4 110 85-206 404-533 (561)
160 PRK06546 pyruvate dehydrogenas 73.8 28 0.00061 36.9 10.8 35 171-206 491-525 (578)
161 TIGR00365 monothiol glutaredox 73.0 9.1 0.0002 30.6 5.3 72 237-310 10-86 (97)
162 PRK06457 pyruvate dehydrogenas 72.7 42 0.00092 35.3 11.7 110 85-206 386-514 (549)
163 PRK06163 hypothetical protein; 72.5 77 0.0017 28.9 14.8 146 43-207 15-169 (202)
164 PRK08322 acetolactate synthase 71.7 38 0.00083 35.4 11.1 35 171-206 489-523 (547)
165 PRK08266 hypothetical protein; 71.4 48 0.001 34.7 11.7 111 85-207 392-521 (542)
166 cd03033 ArsC_15kD Arsenate Red 71.4 10 0.00023 31.3 5.4 48 241-290 2-49 (113)
167 PF10740 DUF2529: Protein of u 71.1 11 0.00025 33.6 5.8 80 188-271 25-115 (172)
168 cd02012 TPP_TK Thiamine pyroph 70.4 49 0.0011 31.1 10.6 102 97-209 109-225 (255)
169 TIGR03254 oxalate_oxc oxalyl-C 70.1 55 0.0012 34.4 11.9 147 45-206 370-533 (554)
170 PRK06276 acetolactate synthase 69.7 35 0.00075 36.2 10.3 109 85-206 409-538 (586)
171 PRK08978 acetolactate synthase 69.1 59 0.0013 34.1 11.8 110 85-206 391-520 (548)
172 KOG2862 Alanine-glyoxylate ami 69.0 24 0.00052 34.7 8.0 97 234-333 88-189 (385)
173 cd02008 TPP_IOR_alpha Thiamine 68.7 46 0.00099 29.4 9.4 31 176-206 142-172 (178)
174 COG1393 ArsC Arsenate reductas 67.9 17 0.00038 30.2 6.1 49 241-291 3-51 (117)
175 COG3961 Pyruvate decarboxylase 67.8 24 0.00052 36.8 8.2 142 58-216 20-175 (557)
176 PF03358 FMN_red: NADPH-depend 67.1 15 0.00032 31.2 5.8 66 247-313 14-93 (152)
177 cd03371 TPP_PpyrDC Thiamine py 67.0 95 0.0021 27.8 13.8 112 85-208 41-160 (188)
178 PRK08527 acetolactate synthase 66.7 52 0.0011 34.7 10.9 109 85-206 404-533 (563)
179 TIGR02418 acolac_catab acetola 66.5 67 0.0015 33.6 11.6 35 171-206 491-525 (539)
180 PRK11869 2-oxoacid ferredoxin 64.3 36 0.00077 32.9 8.3 144 41-206 18-188 (280)
181 KOG4166 Thiamine pyrophosphate 64.0 33 0.00071 35.2 8.0 112 90-212 133-252 (675)
182 cd00858 GlyRS_anticodon GlyRS 63.8 34 0.00074 28.2 7.2 58 239-300 27-88 (121)
183 PLN02470 acetolactate synthase 63.7 67 0.0014 34.1 11.1 36 171-207 518-553 (585)
184 PF03960 ArsC: ArsC family; I 63.4 11 0.00024 30.6 4.1 41 250-291 6-46 (110)
185 PRK06882 acetolactate synthase 63.2 67 0.0014 33.9 10.9 145 45-206 376-541 (574)
186 PRK06466 acetolactate synthase 63.0 96 0.0021 32.8 12.1 110 85-206 413-543 (574)
187 cd03035 ArsC_Yffb Arsenate Red 63.0 18 0.00039 29.4 5.2 43 248-291 7-49 (105)
188 PRK09107 acetolactate synthase 62.1 82 0.0018 33.6 11.4 147 45-207 384-550 (595)
189 PRK03767 NAD(P)H:quinone oxido 61.9 68 0.0015 28.9 9.3 68 246-316 12-95 (200)
190 cd02005 TPP_PDC_IPDC Thiamine 61.8 1.2E+02 0.0025 27.0 11.9 29 178-206 140-169 (183)
191 TIGR02189 GlrX-like_plant Glut 61.2 50 0.0011 26.4 7.4 68 238-309 7-79 (99)
192 PRK09124 pyruvate dehydrogenas 60.8 1E+02 0.0022 32.5 11.8 110 85-206 398-525 (574)
193 cd00859 HisRS_anticodon HisRS 60.8 37 0.0008 25.3 6.4 56 240-298 3-60 (91)
194 PRK07418 acetolactate synthase 60.3 1.2E+02 0.0026 32.4 12.3 35 171-206 520-554 (616)
195 PRK07092 benzoylformate decarb 60.0 1.4E+02 0.0031 31.1 12.6 35 171-206 491-525 (530)
196 TIGR02190 GlrX-dom Glutaredoxi 59.7 38 0.00081 25.6 6.2 71 237-312 6-77 (79)
197 TIGR01504 glyox_carbo_lig glyo 59.7 46 0.001 35.4 9.0 35 171-206 512-550 (588)
198 PRK07710 acetolactate synthase 59.4 91 0.002 32.9 11.1 35 171-206 509-543 (571)
199 cd03418 GRX_GRXb_1_3_like Glut 58.6 23 0.00051 25.9 4.8 66 241-309 2-69 (75)
200 PRK10853 putative reductase; P 58.6 20 0.00043 29.9 4.8 41 249-290 9-49 (118)
201 PRK05858 hypothetical protein; 58.4 78 0.0017 33.2 10.4 35 171-206 491-525 (542)
202 PF01565 FAD_binding_4: FAD bi 57.6 95 0.0021 25.7 9.0 76 180-257 3-81 (139)
203 TIGR03181 PDH_E1_alph_x pyruva 56.8 59 0.0013 32.2 8.6 32 176-208 208-243 (341)
204 CHL00099 ilvB acetohydroxyacid 56.8 2.1E+02 0.0046 30.3 13.3 35 171-206 516-550 (585)
205 PRK09259 putative oxalyl-CoA d 56.7 1E+02 0.0022 32.6 10.9 146 45-206 377-541 (569)
206 TIGR02720 pyruv_oxi_spxB pyruv 56.5 1.4E+02 0.0031 31.5 12.0 35 171-206 491-527 (575)
207 PRK06154 hypothetical protein; 56.4 1.7E+02 0.0038 30.9 12.6 110 85-206 421-550 (565)
208 PRK08611 pyruvate oxidase; Pro 56.1 1.6E+02 0.0035 31.1 12.4 35 171-206 491-525 (576)
209 PRK08199 thiamine pyrophosphat 56.1 1.1E+02 0.0023 32.2 11.0 36 171-207 499-534 (557)
210 PRK06112 acetolactate synthase 55.7 1.1E+02 0.0024 32.3 11.1 108 87-206 429-555 (578)
211 PRK05444 1-deoxy-D-xylulose-5- 55.7 80 0.0017 33.6 9.9 103 96-211 120-242 (580)
212 PRK06456 acetolactate synthase 55.5 1.6E+02 0.0035 31.0 12.2 35 171-206 506-540 (572)
213 PRK07789 acetolactate synthase 55.4 92 0.002 33.3 10.4 110 85-206 437-571 (612)
214 PRK10026 arsenate reductase; P 55.2 36 0.00078 29.4 5.9 43 248-291 10-52 (141)
215 COG0426 FpaA Uncharacterized f 55.2 26 0.00057 35.4 5.8 53 240-295 248-303 (388)
216 cd03034 ArsC_ArsC Arsenate Red 54.5 31 0.00068 28.2 5.3 43 248-291 7-49 (112)
217 PRK06965 acetolactate synthase 54.5 1.1E+02 0.0023 32.6 10.7 110 85-206 427-557 (587)
218 PRK10638 glutaredoxin 3; Provi 54.5 32 0.0007 26.1 5.1 67 240-309 3-70 (83)
219 PRK11200 grxA glutaredoxin 1; 54.4 73 0.0016 24.2 7.2 71 241-315 3-81 (85)
220 cd00738 HGTP_anticodon HGTP an 54.4 58 0.0013 24.7 6.7 58 240-299 3-64 (94)
221 TIGR02194 GlrX_NrdH Glutaredox 54.2 23 0.0005 26.1 4.1 59 248-307 7-65 (72)
222 TIGR01616 nitro_assoc nitrogen 54.2 26 0.00056 29.6 4.8 42 248-290 9-50 (126)
223 cd00861 ProRS_anticodon_short 54.1 64 0.0014 24.7 6.9 59 240-300 3-65 (94)
224 TIGR00824 EIIA-man PTS system, 54.0 1.1E+02 0.0024 25.1 8.6 88 240-334 3-95 (116)
225 TIGR00014 arsC arsenate reduct 53.6 33 0.00072 28.2 5.3 43 248-291 7-49 (114)
226 PRK05778 2-oxoglutarate ferred 53.0 2.3E+02 0.0049 27.6 12.7 35 171-206 161-198 (301)
227 PF03129 HGTP_anticodon: Antic 52.9 45 0.00097 25.7 5.8 57 240-299 1-62 (94)
228 PRK07449 2-succinyl-5-enolpyru 52.8 50 0.0011 34.8 7.8 29 178-206 516-544 (568)
229 PRK09004 FMN-binding protein M 52.7 1.3E+02 0.0027 25.8 9.1 101 243-357 5-113 (146)
230 cd06062 H2MP_MemB-H2up Endopep 52.2 54 0.0012 28.1 6.6 55 241-299 1-62 (146)
231 PRK11269 glyoxylate carboligas 52.0 1.4E+02 0.0031 31.6 11.2 35 171-206 513-551 (591)
232 PRK05899 transketolase; Review 51.7 1.9E+02 0.0042 31.0 12.2 39 171-210 207-247 (624)
233 PF00456 Transketolase_N: Tran 49.9 88 0.0019 30.9 8.5 90 111-213 145-245 (332)
234 PRK12474 hypothetical protein; 49.5 2.3E+02 0.005 29.5 12.1 35 171-206 480-514 (518)
235 PRK13344 spxA transcriptional 49.5 46 0.001 28.2 5.7 42 248-290 8-49 (132)
236 TIGR03336 IOR_alpha indolepyru 49.2 1.9E+02 0.0042 30.8 11.6 34 175-208 494-527 (595)
237 cd01080 NAD_bind_m-THF_DH_Cycl 49.1 51 0.0011 29.2 6.1 51 237-295 43-93 (168)
238 PLN02790 transketolase 49.1 2E+02 0.0043 31.2 11.7 83 118-211 144-238 (654)
239 PF00676 E1_dh: Dehydrogenase 48.1 81 0.0018 30.6 7.9 98 100-208 112-222 (300)
240 COG0655 WrbA Multimeric flavod 48.1 94 0.002 28.1 7.9 69 246-315 13-100 (207)
241 cd06063 H2MP_Cyano-H2up This g 47.8 60 0.0013 27.8 6.3 55 241-299 1-61 (146)
242 cd03412 CbiK_N Anaerobic cobal 47.0 1E+02 0.0022 25.8 7.4 76 240-315 2-95 (127)
243 cd02977 ArsC_family Arsenate R 46.7 52 0.0011 26.2 5.4 43 248-291 7-49 (105)
244 PRK08979 acetolactate synthase 46.6 2.2E+02 0.0047 30.1 11.5 109 85-206 411-541 (572)
245 PRK10264 hydrogenase 1 maturat 46.5 86 0.0019 28.5 7.3 56 239-298 4-66 (195)
246 TIGR03457 sulphoacet_xsc sulfo 46.0 1.8E+02 0.004 30.7 10.8 35 171-206 515-552 (579)
247 TIGR02181 GRX_bact Glutaredoxi 46.0 42 0.00092 25.0 4.5 61 247-309 6-67 (79)
248 PRK08273 thiamine pyrophosphat 45.9 1.8E+02 0.0039 30.9 10.8 35 171-206 507-541 (597)
249 KOG1184 Thiamine pyrophosphate 45.9 93 0.002 32.6 8.0 151 46-215 6-174 (561)
250 cd03032 ArsC_Spx Arsenate Redu 45.3 55 0.0012 26.7 5.4 42 248-290 8-49 (115)
251 PRK12559 transcriptional regul 45.2 63 0.0014 27.3 5.9 41 248-289 8-48 (131)
252 PRK06725 acetolactate synthase 45.2 1.4E+02 0.0031 31.6 9.8 109 85-206 412-540 (570)
253 COG0680 HyaD Ni,Fe-hydrogenase 44.9 64 0.0014 28.4 6.0 55 240-298 3-64 (160)
254 cd06070 H2MP_like-2 Putative [ 44.4 69 0.0015 27.2 6.1 51 243-299 2-56 (140)
255 cd03036 ArsC_like Arsenate Red 44.2 51 0.0011 26.8 5.0 42 248-290 7-48 (111)
256 COG2089 SpsE Sialic acid synth 44.0 97 0.0021 30.7 7.5 73 236-310 145-224 (347)
257 PRK07586 hypothetical protein; 43.1 3.4E+02 0.0074 28.1 12.2 35 171-206 476-510 (514)
258 PRK10466 hybD hydrogenase 2 ma 42.4 1.1E+02 0.0024 26.7 7.2 56 240-299 2-64 (164)
259 PRK12315 1-deoxy-D-xylulose-5- 42.4 2.3E+02 0.005 30.2 10.8 112 87-210 108-242 (581)
260 PRK08327 acetolactate synthase 42.3 1.2E+02 0.0026 32.0 8.8 147 39-206 384-562 (569)
261 cd00518 H2MP Hydrogenase speci 41.9 85 0.0018 26.5 6.2 53 243-299 2-60 (139)
262 PF00258 Flavodoxin_1: Flavodo 41.8 52 0.0011 27.4 4.9 47 246-297 7-53 (143)
263 PRK07524 hypothetical protein; 41.5 2.3E+02 0.0051 29.5 10.7 35 171-206 490-524 (535)
264 COG1104 NifS Cysteine sulfinat 41.4 59 0.0013 32.9 5.8 75 243-317 94-171 (386)
265 PF07905 PucR: Purine cataboli 41.3 1.2E+02 0.0026 25.1 6.9 67 242-309 45-118 (123)
266 COG1165 MenD 2-succinyl-6-hydr 41.2 4.7E+02 0.01 27.8 17.5 149 46-209 11-173 (566)
267 TIGR01617 arsC_related transcr 41.0 52 0.0011 26.9 4.6 44 247-291 6-49 (117)
268 COG4231 Indolepyruvate ferredo 40.6 1.2E+02 0.0026 32.6 8.1 150 38-210 387-553 (640)
269 PRK07979 acetolactate synthase 40.1 2.9E+02 0.0062 29.2 11.2 109 85-206 411-543 (574)
270 TIGR02964 xanthine_xdhC xanthi 39.7 1.6E+02 0.0035 27.7 8.3 119 239-369 101-243 (246)
271 cd03029 GRX_hybridPRX5 Glutare 39.6 1.5E+02 0.0032 21.5 6.9 68 240-312 2-70 (72)
272 PRK06756 flavodoxin; Provision 39.6 1.9E+02 0.004 24.4 8.1 29 246-274 12-40 (148)
273 PF03610 EIIA-man: PTS system 39.5 2E+02 0.0044 23.2 9.4 106 240-352 1-114 (116)
274 TIGR02690 resist_ArsH arsenica 39.3 1.6E+02 0.0034 27.4 7.9 63 250-313 43-113 (219)
275 TIGR00072 hydrog_prot hydrogen 39.2 1.1E+02 0.0024 26.0 6.6 53 243-299 2-61 (145)
276 cd06068 H2MP_like-1 Putative [ 39.0 91 0.002 26.5 6.0 54 243-299 2-61 (144)
277 PRK11544 hycI hydrogenase 3 ma 38.7 77 0.0017 27.5 5.6 57 240-298 2-63 (156)
278 PLN02409 serine--glyoxylate am 37.8 1.1E+02 0.0023 30.7 7.2 51 235-288 81-131 (401)
279 PRK10824 glutaredoxin-4; Provi 37.6 76 0.0017 26.3 5.1 67 238-310 14-89 (115)
280 PRK07064 hypothetical protein; 37.3 1.5E+02 0.0032 31.0 8.4 35 171-206 489-523 (544)
281 cd00006 PTS_IIA_man PTS_IIA, P 37.1 2.3E+02 0.0051 23.2 9.4 109 240-355 2-118 (122)
282 PF00627 UBA: UBA/TS-N domain; 36.7 35 0.00076 22.0 2.3 25 347-371 3-27 (37)
283 PRK07525 sulfoacetaldehyde ace 36.5 3E+02 0.0065 29.2 10.6 110 85-206 425-557 (588)
284 PF14097 SpoVAE: Stage V sporu 35.9 3.2E+02 0.007 24.5 9.4 74 240-316 1-80 (180)
285 TIGR00142 hycI hydrogenase mat 35.8 86 0.0019 26.8 5.3 55 242-298 2-62 (146)
286 PHA03050 glutaredoxin; Provisi 35.1 1.6E+02 0.0034 24.0 6.5 70 238-310 12-88 (108)
287 COG0543 UbiB 2-polyprenylpheno 35.1 2E+02 0.0044 26.9 8.2 72 228-300 96-172 (252)
288 PTZ00089 transketolase; Provis 34.8 5.1E+02 0.011 28.1 12.2 78 123-211 163-249 (661)
289 PRK01655 spxA transcriptional 34.8 85 0.0019 26.4 5.1 43 247-290 7-49 (131)
290 KOG4044 Mitochondrial associat 34.7 2.6E+02 0.0056 25.1 8.0 105 191-299 42-165 (201)
291 COG0695 GrxC Glutaredoxin and 34.7 1E+02 0.0022 23.5 5.1 62 241-304 3-66 (80)
292 PRK12753 transketolase; Review 34.5 4.2E+02 0.0091 28.8 11.4 78 123-211 161-246 (663)
293 PF00289 CPSase_L_chain: Carba 33.9 1.8E+02 0.0039 23.8 6.7 31 239-272 3-33 (110)
294 cd03416 CbiX_SirB_N Sirohydroc 33.6 2E+02 0.0044 22.4 6.9 74 241-314 2-83 (101)
295 cd02000 TPP_E1_PDC_ADC_BCADC T 33.5 2.8E+02 0.006 26.6 9.0 33 175-208 189-225 (293)
296 PF04312 DUF460: Protein of un 33.3 2.7E+02 0.006 24.0 7.8 105 239-369 30-137 (138)
297 PRK10953 cysJ sulfite reductas 32.9 1.7E+02 0.0036 31.5 8.0 104 242-356 64-175 (600)
298 COG1945 Pyruvoyl-dependent arg 32.3 51 0.0011 29.1 3.3 97 242-353 9-117 (163)
299 PF03853 YjeF_N: YjeF-related 32.1 1.5E+02 0.0033 25.9 6.5 51 241-291 29-81 (169)
300 TIGR00130 frhD coenzyme F420-r 32.0 1E+02 0.0022 26.6 5.3 60 239-299 3-70 (153)
301 PRK08105 flavodoxin; Provision 31.0 56 0.0012 28.1 3.4 102 243-356 5-114 (149)
302 PRK08114 cystathionine beta-ly 30.6 1.1E+02 0.0025 30.8 6.0 20 279-298 136-155 (395)
303 TIGR02326 transamin_PhnW 2-ami 30.3 2.5E+02 0.0055 27.2 8.4 25 264-288 101-125 (363)
304 cd01482 vWA_collagen_alphaI-XI 30.2 1.4E+02 0.003 25.5 5.9 53 241-296 107-161 (164)
305 TIGR03249 KdgD 5-dehydro-4-deo 30.1 1.2E+02 0.0026 29.2 5.8 35 264-299 130-164 (296)
306 PRK10569 NAD(P)H-dependent FMN 29.7 2.1E+02 0.0046 25.7 7.1 62 251-313 18-89 (191)
307 PRK07308 flavodoxin; Validated 29.5 2.3E+02 0.0051 23.7 7.0 61 247-314 13-73 (146)
308 PRK06703 flavodoxin; Provision 29.4 1.7E+02 0.0038 24.7 6.2 64 243-313 5-72 (151)
309 cd01474 vWA_ATR ATR (Anthrax T 29.3 62 0.0013 28.5 3.5 56 241-299 107-166 (185)
310 PF04430 DUF498: Protein of un 29.3 40 0.00086 27.5 2.1 37 237-273 52-89 (110)
311 cd01472 vWA_collagen von Wille 29.2 1.4E+02 0.003 25.5 5.6 54 241-297 107-162 (164)
312 cd03409 Chelatase_Class_II Cla 29.1 2.2E+02 0.0048 21.9 6.4 74 241-314 2-84 (101)
313 CHL00149 odpA pyruvate dehydro 28.7 2.4E+02 0.0053 27.9 7.8 33 175-208 220-256 (341)
314 TIGR03569 NeuB_NnaB N-acetylne 28.4 2.6E+02 0.0055 27.7 7.9 73 237-312 132-213 (329)
315 PRK10329 glutaredoxin-like pro 28.4 2.4E+02 0.0052 21.4 6.2 61 241-307 3-66 (81)
316 cd03415 CbiX_CbiC Archaeal sir 28.3 2.4E+02 0.0052 23.7 6.7 57 240-296 2-64 (125)
317 CHL00201 syh histidine-tRNA sy 28.1 1.7E+02 0.0037 29.8 6.9 58 239-299 326-385 (430)
318 COG0028 IlvB Thiamine pyrophos 27.6 3.3E+02 0.0072 28.9 9.1 30 177-206 497-526 (550)
319 cd05125 Mth938_2P1-like Mth938 27.4 46 0.00099 27.6 2.1 38 236-273 52-90 (114)
320 cd01475 vWA_Matrilin VWA_Matri 27.2 1.5E+02 0.0032 27.1 5.7 56 241-299 112-169 (224)
321 cd06211 phenol_2-monooxygenase 27.2 4.8E+02 0.01 23.7 11.6 33 239-271 110-144 (238)
322 PF03102 NeuB: NeuB family; I 27.0 5.3E+02 0.012 24.2 10.2 68 241-310 115-189 (241)
323 PRK09739 hypothetical protein; 26.7 3.3E+02 0.0072 24.2 7.9 64 250-314 20-103 (199)
324 PRK08762 molybdopterin biosynt 26.6 5.2E+02 0.011 25.7 9.9 25 290-318 135-159 (376)
325 PLN02269 Pyruvate dehydrogenas 26.4 2.8E+02 0.0061 27.7 7.9 33 175-208 221-256 (362)
326 PF00532 Peripla_BP_1: Peripla 26.2 5.5E+02 0.012 24.1 11.9 89 237-333 30-130 (279)
327 PLN02573 pyruvate decarboxylas 25.8 5.2E+02 0.011 27.4 10.2 149 40-206 380-547 (578)
328 PF11823 DUF3343: Protein of u 25.5 1.5E+02 0.0032 22.1 4.4 59 243-317 5-63 (73)
329 TIGR01753 flav_short flavodoxi 25.4 3.7E+02 0.008 21.8 9.2 47 244-297 3-53 (140)
330 KOG0572 Glutamine phosphoribos 25.3 2.4E+02 0.0052 28.7 6.9 44 289-336 355-399 (474)
331 COG2241 CobL Precorrin-6B meth 25.3 2.8E+02 0.006 25.6 7.0 71 239-318 95-165 (210)
332 PF12683 DUF3798: Protein of u 25.2 6.2E+02 0.014 24.4 10.3 95 100-202 121-224 (275)
333 PRK05569 flavodoxin; Provision 25.1 1.8E+02 0.0039 24.2 5.5 29 247-275 13-41 (141)
334 TIGR00442 hisS histidyl-tRNA s 24.3 2.3E+02 0.0049 28.3 6.9 57 239-298 323-381 (397)
335 KOG0225 Pyruvate dehydrogenase 24.3 5.1E+02 0.011 25.9 8.8 104 95-210 169-286 (394)
336 cd00248 Mth938-like Mth938-lik 24.1 49 0.0011 27.0 1.7 35 239-273 53-88 (109)
337 TIGR03567 FMN_reduc_SsuE FMN r 24.0 3.3E+02 0.0071 23.7 7.1 64 249-313 15-88 (171)
338 PRK02948 cysteine desulfurase; 23.9 2.7E+02 0.0059 27.2 7.3 26 278-303 155-180 (381)
339 TIGR00106 uncharacterized prot 23.7 2E+02 0.0043 23.1 5.1 48 240-287 4-55 (97)
340 COG0034 PurF Glutamine phospho 23.7 3.5E+02 0.0076 28.1 7.9 94 238-336 283-391 (470)
341 TIGR01755 flav_wrbA NAD(P)H:qu 23.7 4.1E+02 0.0089 23.8 7.9 68 246-316 11-94 (197)
342 PRK14012 cysteine desulfurase; 23.5 3.9E+02 0.0084 26.5 8.4 26 276-301 159-184 (404)
343 PRK12754 transketolase; Review 23.5 7.9E+02 0.017 26.8 11.1 78 124-212 162-247 (663)
344 PRK10646 ADP-binding protein; 23.4 1E+02 0.0022 26.9 3.7 28 43-71 14-41 (153)
345 PLN02651 cysteine desulfurase 23.3 4.2E+02 0.009 25.8 8.5 26 278-303 155-180 (364)
346 KOG1395 Tryptophan synthase be 23.3 4.2E+02 0.009 26.8 8.1 87 46-133 127-219 (477)
347 PRK00037 hisS histidyl-tRNA sy 23.3 2.5E+02 0.0054 28.1 7.0 57 239-298 319-377 (412)
348 COG0062 Uncharacterized conser 23.3 2E+02 0.0043 26.5 5.6 46 241-286 53-98 (203)
349 COG4981 Enoyl reductase domain 23.2 1.2E+02 0.0026 32.1 4.6 53 148-203 178-243 (717)
350 PRK05967 cystathionine beta-ly 23.2 3.4E+02 0.0074 27.4 7.9 32 262-298 126-157 (395)
351 PF02367 UPF0079: Uncharacteri 23.1 96 0.0021 26.1 3.3 27 44-71 2-28 (123)
352 PRK05568 flavodoxin; Provision 22.7 2.1E+02 0.0045 23.7 5.4 29 248-276 14-42 (142)
353 PRK10537 voltage-gated potassi 22.6 2.3E+02 0.005 28.7 6.5 56 238-296 240-309 (393)
354 smart00165 UBA Ubiquitin assoc 22.4 1.2E+02 0.0026 19.1 3.0 23 347-369 2-24 (37)
355 PRK00170 azoreductase; Reviewe 22.3 3.8E+02 0.0083 23.5 7.4 64 250-314 19-110 (201)
356 TIGR00232 tktlase_bact transke 22.3 7.9E+02 0.017 26.6 10.9 43 168-211 195-242 (653)
357 cd05009 SIS_GlmS_GlmD_2 SIS (S 22.3 3.4E+02 0.0073 22.4 6.7 84 237-332 12-99 (153)
358 PF00975 Thioesterase: Thioest 22.1 1.6E+02 0.0034 26.3 4.8 29 240-268 67-95 (229)
359 PTZ00062 glutaredoxin; Provisi 22.0 2.1E+02 0.0046 26.2 5.6 72 238-317 112-192 (204)
360 TIGR02006 IscS cysteine desulf 22.0 2.8E+02 0.0062 27.5 7.1 28 278-305 159-186 (402)
361 PF12500 TRSP: TRSP domain C t 21.7 1.5E+02 0.0033 26.0 4.3 32 237-268 56-87 (155)
362 cd01452 VWA_26S_proteasome_sub 21.7 3.7E+02 0.0081 24.2 7.0 59 241-299 111-175 (187)
363 cd01521 RHOD_PspE2 Member of t 21.6 1.1E+02 0.0024 24.3 3.4 35 236-270 62-96 (110)
364 TIGR03235 DNA_S_dndA cysteine 21.6 2.8E+02 0.006 26.8 6.8 27 278-304 155-181 (353)
365 PRK10684 HCP oxidoreductase, N 21.6 5E+02 0.011 25.1 8.6 34 238-271 111-146 (332)
366 TIGR03566 FMN_reduc_MsuE FMN r 21.5 3.5E+02 0.0077 23.4 6.8 63 251-314 17-92 (174)
367 PRK02812 ribose-phosphate pyro 21.4 7.9E+02 0.017 24.2 10.0 119 168-300 11-149 (330)
368 cd00194 UBA Ubiquitin Associat 21.3 1.3E+02 0.0028 19.1 3.0 23 347-369 2-24 (38)
369 PRK02261 methylaspartate mutas 20.7 4.1E+02 0.009 22.5 6.8 55 237-291 53-112 (137)
370 TIGR03393 indolpyr_decarb indo 20.7 6.6E+02 0.014 26.2 9.7 27 180-206 496-522 (539)
371 COG4565 CitB Response regulato 20.5 2E+02 0.0044 26.8 5.0 99 170-290 17-117 (224)
372 PRK11230 glycolate oxidase sub 20.5 1.3E+02 0.0028 31.5 4.3 36 172-208 51-86 (499)
373 PRK07282 acetolactate synthase 20.3 5.7E+02 0.012 26.9 9.2 108 85-206 408-536 (566)
374 PRK12436 UDP-N-acetylenolpyruv 20.3 1.3E+02 0.0029 29.2 4.1 28 180-207 39-66 (305)
375 PRK13905 murB UDP-N-acetylenol 20.2 4.4E+02 0.0095 25.4 7.7 29 180-208 33-61 (298)
376 PRK13479 2-aminoethylphosphona 20.1 5E+02 0.011 25.1 8.3 26 278-303 148-173 (368)
377 cd06215 FNR_iron_sulfur_bindin 20.0 4E+02 0.0086 23.9 7.1 33 238-270 103-137 (231)
No 1
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=6.8e-72 Score=522.60 Aligned_cols=316 Identities=55% Similarity=0.911 Sum_probs=300.7
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 017410 39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (372)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~ 117 (372)
++++++|++++|.+.|++|++|+++|+|++ +||+|+++++|.++||++|++|++|+|.+++|+|.|||+.|+||++++|
T Consensus 1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq 80 (324)
T COG0022 1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ 80 (324)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence 368999999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 017410 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (372)
Q Consensus 118 ~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a 197 (372)
|.+|+..++|||.|++++.+||++|++++ |+|++++.|..-..+.+|||+.++||.++||++|++|++|.|++.+|+.|
T Consensus 81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~-PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 81 FADFIYPAFDQIVNQAAKIRYRSGGQFTV-PIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred ecchhHHHHHHHHHHHHHHhhhcCCceeC-CEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999999999999999999 99999998877668999999999999999999999999999999999999
Q ss_pred HhCCCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCC
Q 017410 198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP 277 (372)
Q Consensus 198 ~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P 277 (372)
++++.||++++||++||....++|+++|.+|+||+++.|+|+|++||+||.|++.+++|+++|+++||+++|||+|+|+|
T Consensus 160 Ird~dPViflE~k~lY~~~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~P 239 (324)
T COG0022 160 IRDPDPVIFLEHKRLYRSFKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSP 239 (324)
T ss_pred hcCCCCEEEEecHHHhcccccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccccCc
Confidence 99999999999999999666778889999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCccc--ccccCCCCcHHHH-HHHH
Q 017410 278 WDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPL--VFEPFYMPTKNKA-SCLE 354 (372)
Q Consensus 278 ~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~--lle~~~l~~~~~~-~~i~ 354 (372)
+|.++|.++++||+++++|||.+.++|+|++|++.++|+.|.+|++||.|+++.|.|.|+ .+|++.|+..+.| ++++
T Consensus 240 lD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~av~ 319 (324)
T COG0022 240 LDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAAVK 319 (324)
T ss_pred cCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcchhHHhhhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999988899999999999998654 5999999876544 4554
Q ss_pred h
Q 017410 355 S 355 (372)
Q Consensus 355 ~ 355 (372)
+
T Consensus 320 ~ 320 (324)
T COG0022 320 K 320 (324)
T ss_pred H
Confidence 3
No 2
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=9.2e-70 Score=529.88 Aligned_cols=315 Identities=40% Similarity=0.661 Sum_probs=286.5
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCC-ceEecchhHHHHHHHHHHHHhcCCeeEEE
Q 017410 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKS-RVFNTPLCEQGIVGFAIGLAAMGNRAIAE 115 (372)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~-r~i~~GIaE~~~vg~A~GlA~~G~~pi~~ 115 (372)
+++++|++|+++|.+++++||+++++++|++ .+++|+.+++|+++| |+ ||||+||+||+|+|+|+|||++|++||++
T Consensus 2 ~~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~f-p~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~ 80 (327)
T CHL00144 2 SEVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKY-GDLRVLDTPIAENSFTGMAIGAAMTGLRPIVE 80 (327)
T ss_pred CcchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHC-CCccEeeccccHHHHHHHHHHHHHCCCEEEEE
Confidence 4578999999999999999999999999997 345577789999999 88 99999999999999999999999999998
Q ss_pred ecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 017410 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (372)
Q Consensus 116 i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~ 195 (372)
++|++|++|+||||+|++|+++|++++++++ ||+++.+++..+.+|.||||..+++|++||||+|++|+|+.|++.+++
T Consensus 81 ~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~-~vv~~~~g~~~~~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~ 159 (327)
T CHL00144 81 GMNMGFLLLAFNQISNNAGMLHYTSGGNFTI-PIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLK 159 (327)
T ss_pred eehhhHHHHHHHHHHHHHHHHhhccCCCccC-CEEEEecCCCCCCCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 6677889999999999999999999999999 999986655555688899877779999999999999999999999999
Q ss_pred HhHhCCCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeeccc
Q 017410 196 SCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (372)
Q Consensus 196 ~a~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i 275 (372)
++++.++|+|||+|+++++.+ +.++++++.+++||+.++++|.|++||++|+|+..|++|++.|+++||+++|||+++|
T Consensus 160 ~a~~~~~Pv~ire~~~l~~~~-~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~i 238 (327)
T CHL00144 160 SAIRSNNPVIFFEHVLLYNLK-EEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISL 238 (327)
T ss_pred HHHhCCCcEEEEEcHHhcCCC-CCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcC
Confidence 999999999999999999854 5566667889999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCccc---ccccCCCCcHHHHHH
Q 017410 276 IPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPL---VFEPFYMPTKNKASC 352 (372)
Q Consensus 276 ~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~---lle~~~l~~~~~~~~ 352 (372)
+|||++.|.++++++++|+|+|||+..||||++|++.+.+++|..++.|+.++|.+|.+.++ +.+.+|++.++|+++
T Consensus 239 kPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~~gl~~~~I~~~ 318 (327)
T CHL00144 239 KPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEATVIQPAQIIEA 318 (327)
T ss_pred CCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999998764457899999999987663 355568888888877
Q ss_pred HHh
Q 017410 353 LES 355 (372)
Q Consensus 353 i~~ 355 (372)
+++
T Consensus 319 i~~ 321 (327)
T CHL00144 319 VEQ 321 (327)
T ss_pred HHH
Confidence 765
No 3
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=4.3e-69 Score=525.63 Aligned_cols=317 Identities=42% Similarity=0.705 Sum_probs=290.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 017410 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (372)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i 116 (372)
.+++++++|+++|.+++++||+++++++|++ .++.|+.+++|+++|||+||||+||+||+|+|+|+|||++|+|||+++
T Consensus 2 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~ 81 (327)
T PRK09212 2 AQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF 81 (327)
T ss_pred CcchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEe
Confidence 5678999999999999999999999999998 566777789999999999999999999999999999999999999996
Q ss_pred cccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 017410 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (372)
Q Consensus 117 ~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~ 196 (372)
++.+|++||||||+|++|+++|++++++++ |++++.++|.++.+|+|||+..+++||+||||+|++|+|+.|++.++++
T Consensus 82 ~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v-~vv~~~~~g~~~~~G~tH~~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 82 MTFNFSMQAIDQIVNSAAKTNYMSGGQLKC-PIVFRGPNGAAARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred ehhhHHHHHHHHHHHHHHHHhhccCCCcCc-cEEEEeCCCCCCCCCcccccCHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 444788999999999999999999999999 9999988888888899998876799999999999999999999999999
Q ss_pred hHhCCCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccC
Q 017410 197 CIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (372)
Q Consensus 197 a~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~ 276 (372)
+++.++|+|||+++..+.. .++++.+++.+++||++++++|.|++||+||+++..|++|++.|+++|++++|||+++++
T Consensus 161 a~~~~~Pv~i~~~~~~~~~-~~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~ 239 (327)
T PRK09212 161 AIRDPNPVIFLENEILYGH-SHEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLR 239 (327)
T ss_pred HHhCCCcEEEEEchhhcCC-CCCCCCCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 9999999999998876653 344555567899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCccc--ccccCCC-CcHHHHHHH
Q 017410 277 PWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPL--VFEPFYM-PTKNKASCL 353 (372)
Q Consensus 277 P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~--lle~~~l-~~~~~~~~i 353 (372)
|||++.|.+.++++++|+|+|||+..||||+++++.+.++++..++.++.+++++|.+.+. ++|+|+| +.++|++++
T Consensus 240 Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~~~le~~~l~~~~~I~~~i 319 (327)
T PRK09212 240 PLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYAANLEKLALPSEEDIIEAV 319 (327)
T ss_pred CCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCchHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998654456799999999987664 7999999 888999888
Q ss_pred HhC
Q 017410 354 ESF 356 (372)
Q Consensus 354 ~~~ 356 (372)
+++
T Consensus 320 ~~~ 322 (327)
T PRK09212 320 KKV 322 (327)
T ss_pred HHH
Confidence 764
No 4
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-69 Score=504.44 Aligned_cols=298 Identities=25% Similarity=0.390 Sum_probs=271.1
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 017410 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (372)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i 116 (372)
+...++|++|+++|.++.++|+++|++++|+. +|++ +..|.++| ||||+|+||+||+|+|+|+|||++|++||++
T Consensus 4 ~~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~--~St~-~~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~- 78 (312)
T COG3958 4 GNTESLRKVYGETLAELGRKNSDIVVLDADLS--SSTK-TGYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVS- 78 (312)
T ss_pred ccchHHHHHHHHHHHHHHhcCCCEEEEecccc--cccc-hhHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceee-
Confidence 34578999999999999999999999999998 5554 88999999 9999999999999999999999999999999
Q ss_pred cccccHH-HHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHH
Q 017410 117 QFADYIF-PAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKG 192 (372)
Q Consensus 117 ~~~~F~~-ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~ 192 (372)
+|+.|+. |+||||||++++++ + +|-++ +++|. .|++|++|| .+|+++||.+||++|++|+|+.+.+.
T Consensus 79 tfa~F~s~Ra~EQir~~iay~~--------l-nVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~ 149 (312)
T COG3958 79 TFAAFLSRRAWEQIRNSIAYNN--------L-NVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRA 149 (312)
T ss_pred chHHHHHHHHHHHHHHHhhhcc--------C-CeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHH
Confidence 7999985 99999999999765 4 66665 56775 477888886 68999999999999999999999999
Q ss_pred HHHHhHhCCCcEEEEecccccccccccCCC-CCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEe
Q 017410 193 LLLSCIRDPNPVVFFEPKWLYRLSVEEVPE-DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELID 271 (372)
Q Consensus 193 ~l~~a~~~~~Pv~ir~p~~l~r~~~~~v~~-~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~ 271 (372)
+++++.++++|+|+ |+.|.+.+.+.. .+|.|++||++++|+|+|++||++|.|++.+++|++.|+++||++.|||
T Consensus 150 i~~~~~~~~GP~Y~----Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~ 225 (312)
T COG3958 150 ILDQIADYKGPVYM----RLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVIN 225 (312)
T ss_pred HHHHHHhcCCCEEE----EecCCCCCceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999 677766655444 4599999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCc-----ccccccCCCCc
Q 017410 272 LKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF-----PLVFEPFYMPT 346 (372)
Q Consensus 272 ~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~-----~~lle~~~l~~ 346 (372)
+.+|||+|++.+.+.++++++|||+|||+..||+|+.|++.+.+++ +.|++++|.++.+- .+++++|||++
T Consensus 226 m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~ 301 (312)
T COG3958 226 MFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDP 301 (312)
T ss_pred cCccCCCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999987 78999999886532 47899999999
Q ss_pred HHHHHHHHhC
Q 017410 347 KNKASCLESF 356 (372)
Q Consensus 347 ~~~~~~i~~~ 356 (372)
++|++++.++
T Consensus 302 ~~I~~~v~~~ 311 (312)
T COG3958 302 ESIAARVLEL 311 (312)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 5
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=8.8e-69 Score=527.92 Aligned_cols=320 Identities=37% Similarity=0.653 Sum_probs=288.1
Q ss_pred CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeE
Q 017410 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAI 113 (372)
Q Consensus 35 ~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi 113 (372)
.+.++++||++|+++|.+++++||+++++++|++ ++++|+.+++|.++|+|+||||+||+||+|+|+|+|||++|+|||
T Consensus 22 ~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~ 101 (356)
T PLN02683 22 SAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPV 101 (356)
T ss_pred ccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEE
Confidence 4556689999999999999999999999999998 566777788899999899999999999999999999999999999
Q ss_pred EEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHH
Q 017410 114 AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGL 193 (372)
Q Consensus 114 ~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~ 193 (372)
++++|++|++|+||||+|++|+++|++++++++ ||+++++.|...++|+||++.++++||+||||+|++|+|+.|++.+
T Consensus 102 v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~-pV~i~~~~G~~~g~G~tH~~~~~a~lr~iPnl~V~~Pad~~e~~~~ 180 (356)
T PLN02683 102 VEFMTFNFSMQAIDHIINSAAKTNYMSAGQISV-PIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGLKVLAPYSSEDARGL 180 (356)
T ss_pred EEEehhhHHHHHHHHHHHHHHHhccccCCCccC-CEEEEEeCCCCCCCCCccccCHHHHHhcCCCCEEEEeCCHHHHHHH
Confidence 997678889999999999999999999999999 9999976666544688998877999999999999999999999999
Q ss_pred HHHhHhCCCcEEEEecccccccccccC---CCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEE
Q 017410 194 LLSCIRDPNPVVFFEPKWLYRLSVEEV---PEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (372)
Q Consensus 194 l~~a~~~~~Pv~ir~p~~l~r~~~~~v---~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi 270 (372)
++++++.++|+|||+++.+++...+.. .+.++.+++|+++++++|+|++||++|+++..|++|++.|+++||+++||
T Consensus 181 l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VI 260 (356)
T PLN02683 181 LKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVI 260 (356)
T ss_pred HHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999888876532211 12246788999999999999999999999999999999999999999999
Q ss_pred eecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCccc--ccccCCC-CcH
Q 017410 271 DLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPL--VFEPFYM-PTK 347 (372)
Q Consensus 271 ~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~--lle~~~l-~~~ 347 (372)
|++++||||++.|.++++++++|+|+|||+..||||++|++.+.+++|..++.|+.++|.+|.|.|+ .||++++ +++
T Consensus 261 d~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~le~~~~p~~~ 340 (356)
T PLN02683 261 NLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANLERLALPQVE 340 (356)
T ss_pred ECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHHHHhhCCCHH
Confidence 9999999999999999999999999999999999999999999998765457799999999988775 4999999 557
Q ss_pred HHHHHHHh
Q 017410 348 NKASCLES 355 (372)
Q Consensus 348 ~~~~~i~~ 355 (372)
+|++++++
T Consensus 341 ~i~~a~~~ 348 (356)
T PLN02683 341 DIVRAAKR 348 (356)
T ss_pred HHHHHHHH
Confidence 77777765
No 6
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-68 Score=526.00 Aligned_cols=320 Identities=59% Similarity=1.031 Sum_probs=293.1
Q ss_pred CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeE
Q 017410 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAI 113 (372)
Q Consensus 35 ~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi 113 (372)
+-+++++|+++|+++|.+++++||+++++++|++ +|++++.+++|+++|||+||||+||+||+|+++|+|||++|++||
T Consensus 30 ~~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pv 109 (355)
T PTZ00182 30 GATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPI 109 (355)
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEE
Confidence 5566789999999999999999999999999997 666677789999999999999999999999999999999999999
Q ss_pred EEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHH
Q 017410 114 AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGL 193 (372)
Q Consensus 114 ~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~ 193 (372)
++++|++|++|+||||+|++|+++|++++++++ |++++.++|..+.+|+||++.++++|++||||+|++|+|+.|++.+
T Consensus 110 v~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v-~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~ 188 (355)
T PTZ00182 110 AEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDC-PIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGL 188 (355)
T ss_pred EEechhhHHHHHHHHHHHHHHHhhcccCCCccC-CEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHH
Confidence 997799999999999999999999999999999 9999888888888999998887799999999999999999999999
Q ss_pred HHHhHhCCCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeec
Q 017410 194 LLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (372)
Q Consensus 194 l~~a~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 273 (372)
+++++++++|+||++|++++|...+.++.+++.+++||++++++|+|++||+||+++..+++|++.|+++|++++||+++
T Consensus 189 l~~a~~~~~P~~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~ 268 (355)
T PTZ00182 189 LKAAIRDPNPVVFFEPKLLYRESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLR 268 (355)
T ss_pred HHHHHhCCCcEEEEeehHHhCCCCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 99999999999999999999876555555567889999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcccc---cccCCCCcHHHH
Q 017410 274 TLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLV---FEPFYMPTKNKA 350 (372)
Q Consensus 274 ~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~l---le~~~l~~~~~~ 350 (372)
+++|||++.|.+.++++++|+|+|||+..||||++|++.+.++++..++.|+.++|.+|.+.|+. .+.+.++.++|+
T Consensus 269 ~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~le~~~~~~~~~i~ 348 (355)
T PTZ00182 269 SLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKNLEPAYLPDKEKVV 348 (355)
T ss_pred eCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999987655678999999999887643 444555666777
Q ss_pred HHHHh
Q 017410 351 SCLES 355 (372)
Q Consensus 351 ~~i~~ 355 (372)
+++++
T Consensus 349 ~~~~~ 353 (355)
T PTZ00182 349 EAAKR 353 (355)
T ss_pred HHHHH
Confidence 77654
No 7
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=2.6e-68 Score=538.76 Aligned_cols=320 Identities=39% Similarity=0.674 Sum_probs=292.3
Q ss_pred CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeE
Q 017410 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAI 113 (372)
Q Consensus 35 ~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi 113 (372)
.+++++++|++|+++|.+++++|++++++++|++ +++.|+.+++|.++|||+||||+||+||+|+|+|+|||++|+|||
T Consensus 137 ~~~~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPi 216 (464)
T PRK11892 137 TEMVTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPI 216 (464)
T ss_pred CcccchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEE
Confidence 4556678999999999999999999999999997 566777789999999999999999999999999999999999999
Q ss_pred EEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHH
Q 017410 114 AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGL 193 (372)
Q Consensus 114 ~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~ 193 (372)
+++++++|++|+||||+|++|++.||+++++++ ||+++++.|.....|+||+++|++||++||||+|++|+|+.|++.+
T Consensus 217 v~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~-pVv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~l 295 (464)
T PRK11892 217 VEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGC-PIVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGL 295 (464)
T ss_pred EEEehHHHHHHHHHHHHHHHhHHhhhcCCccCC-CEEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHH
Confidence 997667888999999999999999999999999 9999988776555777999999999999999999999999999999
Q ss_pred HHHhHhCCCcEEEEecccccccccccCCC-CCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEee
Q 017410 194 LLSCIRDPNPVVFFEPKWLYRLSVEEVPE-DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (372)
Q Consensus 194 l~~a~~~~~Pv~ir~p~~l~r~~~~~v~~-~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~ 272 (372)
++++++.++|+||++++.++.... .++. +++.+++||++++|+|.|++||++|+++..|++|++.|+++||+++|||+
T Consensus 296 l~~ai~~~~Pv~ile~~~ry~~~~-~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl 374 (464)
T PRK11892 296 LKAAIRDPNPVIFLENEILYGQSF-DVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDL 374 (464)
T ss_pred HHHHhhCCCcEEEEechhhcCCCC-CCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999999999999987665431 1222 45778999999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc--cccccCCC-CcHHH
Q 017410 273 KTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP--LVFEPFYM-PTKNK 349 (372)
Q Consensus 273 ~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~--~lle~~~l-~~~~~ 349 (372)
++|+|||+++|.++++++++|+|+|||+..||||++|++.+.+++|.+++.|+.++|++|.+.+ +++|+|+| +.++|
T Consensus 375 ~tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~~~~~le~~~l~~~~~I 454 (464)
T PRK11892 375 RTIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPYAANLEKLALPSVAEV 454 (464)
T ss_pred CCCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCCcHHHHHHhcCCCHHHH
Confidence 9999999999999999999999999999999999999999999987667889999999998765 47999999 88899
Q ss_pred HHHHHhC
Q 017410 350 ASCLESF 356 (372)
Q Consensus 350 ~~~i~~~ 356 (372)
+++++++
T Consensus 455 v~av~~~ 461 (464)
T PRK11892 455 VEAVKAV 461 (464)
T ss_pred HHHHHHH
Confidence 9888753
No 8
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.3e-62 Score=511.99 Aligned_cols=302 Identities=21% Similarity=0.268 Sum_probs=266.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecc
Q 017410 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (372)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~ 118 (372)
..+|+++|+++|.+++++|++||++++|+..| + .+++|+++| |+||||+|||||+|+++|+|||++|++||+++ |
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~g-t--gl~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~i-y 454 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMD-A--SLITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCII-P 454 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCc-c--cHHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEEe-e
Confidence 35899999999999999999999999999743 2 378999999 99999999999999999999999999999995 9
Q ss_pred cccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 017410 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (372)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~ 196 (372)
++|++||||||+||+|+++ . ||+++ .++|.+|.+|+||+ .+|+++||+||||+|++|+|+.|++.++++
T Consensus 455 stFlqRAyDQI~~Dval~~--------l-pV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~ 525 (701)
T PLN02225 455 SAFLQRAYDQVVHDVDRQR--------K-AVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVAT 525 (701)
T ss_pred hhHHHHHHHHHHHHHHhhc--------C-CceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 9999999999999999876 3 55555 66788888898887 579999999999999999999999999999
Q ss_pred hHh-CCCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeeccc
Q 017410 197 CIR-DPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (372)
Q Consensus 197 a~~-~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i 275 (372)
|+. .++|+|||+||..... .+...++++.+++||++++++|.|++||++|+++..|++|++.|+++||+++|||++++
T Consensus 526 A~~~~~gPv~IR~pRg~~~~-~~~~~~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~i 604 (701)
T PLN02225 526 AAYVTDRPVCFRFPRGSIVN-MNYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFC 604 (701)
T ss_pred HHhcCCCCEEEEecccccCC-CCcCCCCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 985 5799999999975432 11111234678999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc-----cccccCCCCcHHHH
Q 017410 276 IPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP-----LVFEPFYMPTKNKA 350 (372)
Q Consensus 276 ~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~-----~lle~~~l~~~~~~ 350 (372)
||||++.|.++++++++|||+|||+. ||||+.|++++.++++...+.++.++|.+|.+++ +++++|||++++|+
T Consensus 605 kPLD~e~I~~~~~k~~~vVTvEE~~~-GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~~GLdae~I~ 683 (701)
T PLN02225 605 KPLDIKLVRDLCQNHKFLITVEEGCV-GGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTGHHIA 683 (701)
T ss_pred CCCCHHHHHHHHhhcCeEEEEcCCCC-CchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHHhCcCHHHHH
Confidence 99999999999999999999999986 9999999999998863101357899999886553 68999999999999
Q ss_pred HHHHhC
Q 017410 351 SCLESF 356 (372)
Q Consensus 351 ~~i~~~ 356 (372)
++++++
T Consensus 684 ~~i~~~ 689 (701)
T PLN02225 684 ATALSL 689 (701)
T ss_pred HHHHHH
Confidence 988764
No 9
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=1.6e-61 Score=486.76 Aligned_cols=301 Identities=19% Similarity=0.300 Sum_probs=273.5
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 017410 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (372)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i 116 (372)
....+|.++|+++|.+++++|+++|.+++.|..| + ++.+|+++| |+||||+|||||++|++|+|||.+|++|+++|
T Consensus 313 ~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~g--t-GL~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI 388 (627)
T COG1154 313 PSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEG--T-GLVKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI 388 (627)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCC--C-ChHHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEEEE
Confidence 4457799999999999999999999999999854 2 489999999 99999999999999999999999999999997
Q ss_pred cccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCCCh-hHHHHHcCCCCcEEEeeCCHHHHHHHH
Q 017410 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYHSQ-SPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (372)
Q Consensus 117 ~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~Hs~-~d~a~l~~iP~l~V~~Psd~~e~~~~l 194 (372)
|++|+||||||+.||+|+++ + ||++. +++|.+|.||.||+. .|+++||+||||+|++|+|.+|++.++
T Consensus 389 -YSTFLQRAYDQliHDvaiqn--------L-PV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml 458 (627)
T COG1154 389 -YSTFLQRAYDQLIHDVAIQN--------L-PVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQML 458 (627)
T ss_pred -ecHHHHHHHHHHHHHHHhcc--------C-CeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHH
Confidence 99999999999999999876 6 88886 899999999999986 699999999999999999999999999
Q ss_pred HHhHhCC-CcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeec
Q 017410 195 LSCIRDP-NPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (372)
Q Consensus 195 ~~a~~~~-~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 273 (372)
.|++.++ +|+.||+||.-.-.. ....+-..+++||++++++|.|++||++|.++..|++|++.|.++||+++|||+|
T Consensus 459 ~ta~~~~~gP~AiRyPrg~~~~~--~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~r 536 (627)
T COG1154 459 YTALAQDDGPVAIRYPRGNGVGV--ILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPR 536 (627)
T ss_pred HHHHhcCCCCeEEEecCCCCCCC--CcccccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCe
Confidence 9999986 899999999633221 1111134578999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc-----cccccCCCCcHH
Q 017410 274 TLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP-----LVFEPFYMPTKN 348 (372)
Q Consensus 274 ~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~-----~lle~~~l~~~~ 348 (372)
++||+|++.|.+.++.++.+||+||+...||+|+.|+++|.++++ ..|+.++|.+|.+++ ++++.+||+++.
T Consensus 537 fvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~ 613 (627)
T COG1154 537 FVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGLDAEG 613 (627)
T ss_pred ecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC---CCceEEecCChHhhccCCHHHHHHHcCCCHHH
Confidence 999999999999999999999999999999999999999999874 689999999998765 578999999999
Q ss_pred HHHHHHhC
Q 017410 349 KASCLESF 356 (372)
Q Consensus 349 ~~~~i~~~ 356 (372)
+.++|.++
T Consensus 614 i~~~i~~~ 621 (627)
T COG1154 614 IARRILEW 621 (627)
T ss_pred HHHHHHHH
Confidence 88888764
No 10
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.3e-61 Score=441.90 Aligned_cols=346 Identities=41% Similarity=0.663 Sum_probs=311.7
Q ss_pred hhhhhhcccCCCccccccccccccCCCccCCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhC
Q 017410 6 RRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFG 84 (372)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~ 84 (372)
.+|++++.++.+. .|.+......++-+.....+++.|+|++++|.+.+++|++|++++++++ ++|+|+.+++|.+|||
T Consensus 2 ~~~~~~lr~~~~r-~~~~~~~~r~a~ts~r~~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G 80 (359)
T KOG0524|consen 2 KSFGGSLRRRSLR-LISNLVATRFAWTSARAAKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFG 80 (359)
T ss_pred cchhHHHHHhHHH-hhhhhhhhhhhhcccccceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcC
Confidence 4567776654443 2344444455555555588899999999999999999999999999999 8999999999999999
Q ss_pred CCceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCC
Q 017410 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (372)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~ 164 (372)
+.|++|++|.|.+..|+|.|+|+.|+||+++.+...|++.++|||.|++++..||++|++++ |+|+++|+|...+-+.+
T Consensus 81 ~~RV~DTPItE~gFtG~avGAA~~GLrPi~efMtfnFsmqAid~IiNsaakt~YmSgG~~~~-piVfRGPnG~~~gv~Aq 159 (359)
T KOG0524|consen 81 DKRVLDTPITEMGFTGIAVGAAMAGLRPICEFMTFNFSMQAIDQIINSAAKTHYMSGGQQPV-PIVFRGPNGAAAGVAAQ 159 (359)
T ss_pred CceeecCcchhcccchhhHhHHHhCcchhhhhhcchhHHHHHHHHHHHHHHHhcccCCceec-cEEEeCCCCcccchhhh
Confidence 99999999999999999999999999999997777889999999999999999999999999 99999999987777999
Q ss_pred CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEecccccccccccCCC----CCccccCCceEEeeeCCc
Q 017410 165 HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE----DDYMLPLSEAEVIREGSD 240 (372)
Q Consensus 165 Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~ir~p~~l~r~~~~~v~~----~~~~~~~Gk~~v~~~g~d 240 (372)
|+|...+|+.++||++|++|.+++|++.+++.|+++++||+++++.-||.... ++++ ++|..++||+.+.|+|.|
T Consensus 160 HSQ~f~~wy~siPGlkvvapysaedakGLlKaAIRd~NPVV~lEnelLYg~~f-~i~~E~ls~~fv~p~gkAkier~G~~ 238 (359)
T KOG0524|consen 160 HSQDFASWYGSIPGLKVVAPYSAEDAKGLLKAAIRDENPVVFLENELLYGLSF-EIPEEALSKDFVLPLGKAKIEREGTH 238 (359)
T ss_pred hhhhhHHHhccCCCceEeccCChhhhhhHHHHhccCCCCeEEEechhhcCCCc-cCChhhcCcceeeeccceeeeecCCc
Confidence 99999999999999999999999999999999999999999999998886543 3333 358889999999999999
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhcccc
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLR 320 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~ 320 (372)
++||++..++..+++|++.|.++|++++|||+|+|+|||.++|.++++|+.++++||+.+..+|+|++|++.+.|+.|.+
T Consensus 239 iTivt~Sr~v~~~leAA~~L~~~Gvs~EVInlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdy 318 (359)
T KOG0524|consen 239 ITIVTYSRMVGHCLEAAETLVAKGVSAEVINLRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDY 318 (359)
T ss_pred eEEEEechhHHHHHHHHHHHHhcCCCceeEeeeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCCcEEEEeccCCCcccc--cccCCCCcH-HHHHHHH
Q 017410 321 LEAPVARVCGLDTPFPLV--FEPFYMPTK-NKASCLE 354 (372)
Q Consensus 321 l~~~v~~ig~~~~~~~~l--le~~~l~~~-~~~~~i~ 354 (372)
|+.|+.|+.+.|.|.||. +|+.-++.. +++..++
T Consensus 319 LdAPv~rvtg~DvP~PYa~~lE~~a~p~~~~iV~Avk 355 (359)
T KOG0524|consen 319 LDAPVQRVTGADVPTPYAKTLEDWAVPQPADIVTAVK 355 (359)
T ss_pred hcchhhhhcCCCCCCccchhhHhhcCCCHHHHHHHHH
Confidence 999999999999988874 888888654 5555554
No 11
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=6.7e-60 Score=494.85 Aligned_cols=300 Identities=19% Similarity=0.327 Sum_probs=269.4
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 017410 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (372)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~ 117 (372)
+..+|+++|+++|.+++++|++|+++++|+..+ . .+++|+++| |+||||+||+||+|+++|+|||++|++||+++
T Consensus 308 ~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~--~-~~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~- 382 (617)
T TIGR00204 308 ALPSYSKIFSDTLCELAKKDNKIVGITPAMPEG--S-GLDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAI- 382 (617)
T ss_pred CCccHHHHHHHHHHHHHhhCcCEEEEECCccCC--c-ChHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEEe-
Confidence 346899999999999999999999999998622 2 389999999 99999999999999999999999999999995
Q ss_pred ccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCCCh-hHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 017410 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYHSQ-SPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (372)
Q Consensus 118 ~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~Hs~-~d~a~l~~iP~l~V~~Psd~~e~~~~l~ 195 (372)
|++|++||||||++++|+++ + ||+++ .++|.+|.+|+|||+ +|+++|++||||+|++|+|+.|++.+++
T Consensus 383 ~a~Fl~ra~dQi~~~~a~~~--------l-pV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~ 453 (617)
T TIGR00204 383 YSTFLQRAYDQVVHDVCIQK--------L-PVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLY 453 (617)
T ss_pred cHHHHHHHHHHHHHHHHhcC--------C-CEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHH
Confidence 99999999999999999754 6 99998 457777888988875 7999999999999999999999999999
Q ss_pred HhHhCC-CcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecc
Q 017410 196 SCIRDP-NPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (372)
Q Consensus 196 ~a~~~~-~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 274 (372)
+|++.+ +|+|||+||..+.. . ..++..+.+++||++++++|.|++||++|+++..|++|++.|+++||+++|||+++
T Consensus 454 ~a~~~~~~Pv~ir~~r~~~~~-~-~~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~ 531 (617)
T TIGR00204 454 TGYHYDDGPIAVRYPRGNAVG-V-ELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARF 531 (617)
T ss_pred HHHhCCCCCEEEEEccCCcCC-c-ccCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 999975 99999999865421 1 11123467899999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc-----cccccCCCCcHHH
Q 017410 275 LIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP-----LVFEPFYMPTKNK 349 (372)
Q Consensus 275 i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~-----~lle~~~l~~~~~ 349 (372)
++|||++.|.+++++++++||+|||+..||||++|++++.+++ ++.++.++|.+|.+++ +++++|||+.++|
T Consensus 532 lkPlD~e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~---~~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I 608 (617)
T TIGR00204 532 VKPLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQN---KLVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGM 608 (617)
T ss_pred CCcCCHHHHHHHHhhcCeEEEEECCCCccChHHHHHHHHHhcC---CCCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHH
Confidence 9999999999999999999999999999999999999999986 4678999999886654 6799999999999
Q ss_pred HHHHHhC
Q 017410 350 ASCLESF 356 (372)
Q Consensus 350 ~~~i~~~ 356 (372)
+++++++
T Consensus 609 ~~~i~~~ 615 (617)
T TIGR00204 609 EAKILAW 615 (617)
T ss_pred HHHHHHh
Confidence 9998754
No 12
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.9e-59 Score=491.28 Aligned_cols=301 Identities=19% Similarity=0.294 Sum_probs=265.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecc
Q 017410 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (372)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~ 118 (372)
..+|.++|+++|.+++++||+||++++|++ ++++ +.+|+++| |+||||+||+||+|+++|+|||+.|++||+++ |
T Consensus 355 ~~~~s~a~~~aL~~~a~~d~~vv~ita~m~--g~~g-l~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~-f 429 (677)
T PLN02582 355 TQSYTTYFAEALIAEAEVDKDVVAIHAAMG--GGTG-LNLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-Y 429 (677)
T ss_pred CcCHHHHHHHHHHHHHccCCCEEEEeCCCC--Cccc-hHHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEEe-c
Confidence 358999999999999999999999999987 5565 67899999 99999999999999999999999999999995 9
Q ss_pred cccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCCCh-hHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 017410 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYHSQ-SPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (372)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~Hs~-~d~a~l~~iP~l~V~~Psd~~e~~~~l~~ 196 (372)
++|++||||||++++|+++ + ||+++ .++|.+|.+|+||++ +|+++||+||||+|++|+|+.|++.++++
T Consensus 430 s~Fl~RA~DQI~~dval~~--------l-pVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 500 (677)
T PLN02582 430 SSFLQRGYDQVVHDVDLQK--------L-PVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVAT 500 (677)
T ss_pred HHHHHHHHHHHHHHHHhcC--------C-CEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 9999999999999999765 6 99888 567888888999975 79999999999999999999999999999
Q ss_pred hHhC-CCcEEEEecccccccccccCCCC--CccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeec
Q 017410 197 CIRD-PNPVVFFEPKWLYRLSVEEVPED--DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (372)
Q Consensus 197 a~~~-~~Pv~ir~p~~l~r~~~~~v~~~--~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 273 (372)
|++. ++|+|||+||.... ...++.. ++.+++||++++++|.|++||++|+++..|++|++.|+++||+++|||++
T Consensus 501 al~~~~gPv~IR~pr~~~~--~~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~ 578 (677)
T PLN02582 501 AAAIDDRPSCFRYPRGNGI--GVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVADAR 578 (677)
T ss_pred HHhCCCCCEEEEEecCCCC--CcccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 9975 59999999986321 1112221 35688999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCc-----ccccccCCCCcHH
Q 017410 274 TLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF-----PLVFEPFYMPTKN 348 (372)
Q Consensus 274 ~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~-----~~lle~~~l~~~~ 348 (372)
+++|||++.|.+.+++++.+||+|||.. ||||++|++++.+++......++.++|.+|.+. .+++++|||+++.
T Consensus 579 ~lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~~e~ 657 (677)
T PLN02582 579 FCKPLDRALIRSLAKSHEVLITVEEGSI-GGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLTPSH 657 (677)
T ss_pred cCCCCCHHHHHHHhhhCCEEEEECCCCC-CcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHHHhCcCHHH
Confidence 9999999999888888888899999987 999999999999875310125789999988654 3689999999999
Q ss_pred HHHHHHhC
Q 017410 349 KASCLESF 356 (372)
Q Consensus 349 ~~~~i~~~ 356 (372)
|+++++++
T Consensus 658 I~~~i~~~ 665 (677)
T PLN02582 658 IAATVLNV 665 (677)
T ss_pred HHHHHHHH
Confidence 99998764
No 13
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=6.9e-58 Score=477.01 Aligned_cols=294 Identities=18% Similarity=0.224 Sum_probs=260.5
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecc
Q 017410 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (372)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~ 118 (372)
+.+++++|+++|.+++++|++++++++|++ +.++ +++|+++| |+||||+||+||+|+++|+|||++|++||+. +|
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~--~~~~-~~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~-~f 351 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIP--GVFG-LKEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIF-VN 351 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCccc--cccC-cHHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEE-ee
Confidence 568999999999999999999999999987 4555 68999999 9999999999999999999999999999997 79
Q ss_pred cccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 017410 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (372)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~ 196 (372)
++|++||||||++++|+++ + ||+++ +++|..+ +|+||+ .+|+++||+||||+|++|+|+.|++.++++
T Consensus 352 s~Fl~ra~dQi~~d~a~~~--------l-pv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~ 421 (581)
T PRK12315 352 STFLQRAYDQLSHDLAINN--------N-PAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEW 421 (581)
T ss_pred HHHHHHHHHHHHHHHHhcC--------C-CEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHH
Confidence 9999999999999999764 6 99988 4566666 888887 479999999999999999999999999999
Q ss_pred hHhC-CCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhc-CCceeEEeecc
Q 017410 197 CIRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKT 274 (372)
Q Consensus 197 a~~~-~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~ 274 (372)
|++. ++|+|||+||..++. ++.....+..+|++++++|+|++||++|+++..|++|++.|+++ ||+++|||++|
T Consensus 422 a~~~~~gP~~ir~~r~~~~~----~~~~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ 497 (581)
T PRK12315 422 ALTQHEHPVAIRVPEHGVES----GPTVDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKF 497 (581)
T ss_pred HHhCCCCcEEEEEcCCccCC----CCCCccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCc
Confidence 9986 799999999875532 11112234567999999999999999999999999999999999 99999999999
Q ss_pred cCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCC-----CcccccccCCCCcHHH
Q 017410 275 LIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT-----PFPLVFEPFYMPTKNK 349 (372)
Q Consensus 275 i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~-----~~~~lle~~~l~~~~~ 349 (372)
++|||++.+.+..++++.+||+|||+..||||++|++++.+.+ .++.++|.++. +.++++++|||++++|
T Consensus 498 ikPlD~~~i~~~~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~~~I 572 (581)
T PRK12315 498 ITGLDEELLEKLKEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFNDRVPVEELYKRNHLTPEQI 572 (581)
T ss_pred CCCCCHHHHHHHHhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEecCCCCCCCCCCHHHHHHHHCcCHHHH
Confidence 9999999998888788899999999999999999999998763 47889998774 3447899999999999
Q ss_pred HHHHHhC
Q 017410 350 ASCLESF 356 (372)
Q Consensus 350 ~~~i~~~ 356 (372)
+++++++
T Consensus 573 ~~~i~~~ 579 (581)
T PRK12315 573 VEDILSV 579 (581)
T ss_pred HHHHHHH
Confidence 9988753
No 14
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.2e-57 Score=479.31 Aligned_cols=301 Identities=22% Similarity=0.321 Sum_probs=265.8
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecc
Q 017410 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (372)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~ 118 (372)
..+|+++|+++|.+++++||+++++++|+.. +.+ +++|+++| |+||||+||+||+|+++|+|||++|++||+++ |
T Consensus 318 ~~~~~~~f~~~L~~la~~d~~iv~isadl~~--~~~-~~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~-f 392 (641)
T PRK12571 318 APSYTSVFGEELTKEAAEDSDIVAITAAMPL--GTG-LDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAV-Y 392 (641)
T ss_pred chhHHHHHHHHHHHHHhhCCCEEEEeCCccC--CCC-hHHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEEe-h
Confidence 3589999999999999999999999999963 233 78999999 99999999999999999999999999999995 9
Q ss_pred cccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCCCh-hHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 017410 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYHSQ-SPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (372)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~Hs~-~d~a~l~~iP~l~V~~Psd~~e~~~~l~~ 196 (372)
++|++||+|||++++|+++ + |++++ +++|.+|++|+|||+ +|+++||+||||+|++|+|+.|++.++++
T Consensus 393 ~~Fl~ra~dQI~~~~a~~~--------l-pv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~ 463 (641)
T PRK12571 393 STFLQRGYDQLLHDVALQN--------L-PVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRT 463 (641)
T ss_pred HHHHHHHHHHHHHHHhhcC--------C-CeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 9999999999999999764 6 88887 578877888999975 79999999999999999999999999999
Q ss_pred hHhC-CCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeeccc
Q 017410 197 CIRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (372)
Q Consensus 197 a~~~-~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i 275 (372)
|++. ++|+|||+||..+.. ..++.+++.+++||+.++++|+|++||++|+++..|++|++.|+++||+++|||+++|
T Consensus 464 a~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~l 541 (641)
T PRK12571 464 AAAHDDGPIAVRFPRGEGVG--VEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFV 541 (641)
T ss_pred HHhCCCCcEEEEEecCcCCc--cccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcC
Confidence 9995 899999998864321 1233344668899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc-----cccccCCCCcHHHH
Q 017410 276 IPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP-----LVFEPFYMPTKNKA 350 (372)
Q Consensus 276 ~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~-----~lle~~~l~~~~~~ 350 (372)
+|||++.+.+.+ ++++++|+||++..||||++|++++.++++..++.++.++|.+|.+.+ +++++||+++++|+
T Consensus 542 kPlD~~~i~sv~-k~~~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~ 620 (641)
T PRK12571 542 KPLDEALTDLLV-RHHIVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIA 620 (641)
T ss_pred CCcCHHHHHHHh-hhCCEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHH
Confidence 999999986655 555889999999999999999999999875444678999998776543 57999999999999
Q ss_pred HHHHhC
Q 017410 351 SCLESF 356 (372)
Q Consensus 351 ~~i~~~ 356 (372)
++++++
T Consensus 621 ~~i~~~ 626 (641)
T PRK12571 621 AAVTGA 626 (641)
T ss_pred HHHHHH
Confidence 998764
No 15
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.2e-58 Score=416.87 Aligned_cols=342 Identities=77% Similarity=1.270 Sum_probs=315.9
Q ss_pred chhhhhhhhhcccCCCcccccccccccc------CCCcc--CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcc
Q 017410 2 ASGLRRFVGSLSRRNLSTACANKQLIQQ------HDGGV--GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVF 73 (372)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~ 73 (372)
|.+++||..-.|. |.|.|+. ++... ++.++++.-++++++|.-.+++||+-+++++|++.||+|
T Consensus 3 a~~~~~~~~~~s~--------~~~~~g~~~~tfqp~~~~e~ge~~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvf 74 (362)
T KOG0525|consen 3 ARLVSRFCRCGSF--------PSQTRGKAHFTFQPSTTLEAGEKKKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVF 74 (362)
T ss_pred hhhhhhhhccccc--------hhhccceeEEeccCCCcccccccccchHHHHHHHHHHHHhhcCCceEEeccccccceEE
Confidence 4566676655443 3444443 33334 455788889999999999999999999999999999999
Q ss_pred ccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEe
Q 017410 74 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (372)
Q Consensus 74 ~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~ 153 (372)
+++.+++++||.+|+||+++.||+++|+..|+|..|.+.+++|+|++++..|||||.|++++.+|.+++++++|+++|+.
T Consensus 75 rct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiqfadyifpafdqivneaakfryrsgnqfncg~ltir~ 154 (362)
T KOG0525|consen 75 RCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRA 154 (362)
T ss_pred EeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEeeccccchhHHHHHHHHHhheeccCCccccCceEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEecccccccccccCCCCCccccCCceE
Q 017410 154 PYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAE 233 (372)
Q Consensus 154 ~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~ 233 (372)
+-|.+|+++.+|||+.++++.+.||++|+.|..|.|++.++-.++++++|+++++||+|||...+++|..+|.+|++.++
T Consensus 155 p~gavghg~~yhsqspeaff~h~pgikvviprsp~qakglllscirdpnp~iffepk~lyr~a~edvp~~dy~iplsqae 234 (362)
T KOG0525|consen 155 PWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLSCIRDPNPCIFFEPKILYRQAVEDVPEGDYMIPLSQAE 234 (362)
T ss_pred cccccccccccccCCchhheecCCCceEEecCCcchhhceeeeeccCCCceEEechHHHHHHhhhhCCCCCccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCcEEEEEeChhHHHHHHHHHHH-HhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHH
Q 017410 234 VIREGSDITLVGWGAQLSIMEQACLDA-EKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISAS 312 (372)
Q Consensus 234 v~~~g~di~ii~~G~~~~~a~~Aa~~L-~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~ 312 (372)
++|+|+|+++|+||.-++.++|++..- +++|++++|||+++|-|+|.+.+.++++|++++++-.|...+||+|++|++.
T Consensus 235 vireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidlkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiast 314 (362)
T KOG0525|consen 235 VIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDLKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIAST 314 (362)
T ss_pred HhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEeeecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHH
Confidence 999999999999999999999988643 3459999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCcEEEEeccCCCcccccccCCCCcHHHHH
Q 017410 313 ILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKAS 351 (372)
Q Consensus 313 l~~~~~~~l~~~v~~ig~~~~~~~~lle~~~l~~~~~~~ 351 (372)
+.+++|-.|..||.|+++.|.|+|.+.|-|+++..+.+-
T Consensus 315 v~ercfl~leapisrvcg~dtpfp~vfepfy~ptk~ki~ 353 (362)
T KOG0525|consen 315 VQERCFLNLEAPISRVCGLDTPFPHVFEPFYMPTKNKIL 353 (362)
T ss_pred HHHHHHhhccCchhhhccCCCCCcccccccccCcHhHHH
Confidence 999998778999999999999999999999999876553
No 16
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=5.4e-56 Score=463.90 Aligned_cols=292 Identities=21% Similarity=0.348 Sum_probs=261.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEeccc
Q 017410 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFA 119 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~ 119 (372)
.+|+++|+++|.+++++||+++++++|+..+ .+ +.+|+++| |+||||+||+||+|+++|+|||++|++||+++ |+
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~--~~-~~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~-f~ 353 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEG--TG-LVKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAI-YS 353 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCC--CC-HHHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEEe-eH
Confidence 6899999999999999999999999998632 23 57799999 99999999999999999999999999999995 99
Q ss_pred ccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEe-CCCCCCCCCCCCCh-hHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 017410 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVGHGGHYHSQ-SPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (372)
Q Consensus 120 ~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~-~~G~~g~~G~~Hs~-~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a 197 (372)
+|++|++|||++++|+++ + |++++. ++|..+.+|+|||+ +|+++||+||||+|++|+|+.|++.+++++
T Consensus 354 ~F~~ra~dQi~~~~a~~~--------~-pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a 424 (580)
T PRK05444 354 TFLQRAYDQVIHDVALQN--------L-PVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTA 424 (580)
T ss_pred HHHHHHHHHHHHHhhhcC--------C-CEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 999999999999999754 6 999984 57777788988975 799999999999999999999999999999
Q ss_pred HhC-CCcEEEEecccccccccccCC-CCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeeccc
Q 017410 198 IRD-PNPVVFFEPKWLYRLSVEEVP-EDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (372)
Q Consensus 198 ~~~-~~Pv~ir~p~~l~r~~~~~v~-~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i 275 (372)
++. ++|+|||++|..+. .++ ++.+.+++||++++++|+|++||++|+++..|++|++.|+ +++|||++|+
T Consensus 425 ~~~~~~P~~ir~~r~~~~----~~~~~~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i 496 (580)
T PRK05444 425 LAYDDGPIAIRYPRGNGV----GVELPELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFV 496 (580)
T ss_pred HhCCCCcEEEEecCCCCC----CCCCCCcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcC
Confidence 976 89999988886542 221 2256789999999999999999999999999999999995 8999999999
Q ss_pred CCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc-----cccccCCCCcHHHH
Q 017410 276 IPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP-----LVFEPFYMPTKNKA 350 (372)
Q Consensus 276 ~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~-----~lle~~~l~~~~~~ 350 (372)
+|||++.|.+++++++++||+|||+..||||++|++++.++++ +.|+.++|.+|.+.+ +++++|||++++|+
T Consensus 497 ~p~D~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~ 573 (580)
T PRK05444 497 KPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHGSREELLAELGLDAEGIA 573 (580)
T ss_pred CccCHHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCCCHHHHHHHHCcCHHHHH
Confidence 9999999999999999999999999999999999999998864 568999998776543 57999999999999
Q ss_pred HHHHhC
Q 017410 351 SCLESF 356 (372)
Q Consensus 351 ~~i~~~ 356 (372)
++++++
T Consensus 574 ~~i~~~ 579 (580)
T PRK05444 574 RRILEL 579 (580)
T ss_pred HHHHhh
Confidence 998764
No 17
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.3e-55 Score=458.89 Aligned_cols=263 Identities=20% Similarity=0.319 Sum_probs=236.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecc
Q 017410 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (372)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~ 118 (372)
.++|+++|+++|.+++++||+|+++++|++. .. .++.|+++| |+||||+||+||+|+++|+|||++|+|||+++ |
T Consensus 356 ~~sy~~af~~aL~e~a~~D~~Iv~l~adm~g--gt-~~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~-f 430 (641)
T PLN02234 356 TQSYTSCFVEALIAEAEADKDIVAIHAAMGG--GT-MLNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCTI-Y 430 (641)
T ss_pred CCCHHHHHHHHHHHHHHHCcCEEEEECCCCC--Cc-chHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEEEe-h
Confidence 3689999999999999999999999999973 23 378899999 99999999999999999999999999999995 9
Q ss_pred cccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCCCh-hHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 017410 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYHSQ-SPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (372)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~Hs~-~d~a~l~~iP~l~V~~Psd~~e~~~~l~~ 196 (372)
++|++|+||||+|++|+++ + |++++ +++|..|.+|+||++ +|+++||+||||+|++|+|+.|++.++++
T Consensus 431 s~Fl~RA~DQI~~dva~~~--------l-pV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 501 (641)
T PLN02234 431 SSFMQRAYDQVVHDVDLQK--------L-PVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVAT 501 (641)
T ss_pred HHHHHHHHHHHHHHHhhcC--------C-CEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 9999999999999999765 5 88887 577877888999975 79999999999999999999999999999
Q ss_pred hHhC-CCcEEEEecccccccccccCCC--CCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeec
Q 017410 197 CIRD-PNPVVFFEPKWLYRLSVEEVPE--DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (372)
Q Consensus 197 a~~~-~~Pv~ir~p~~l~r~~~~~v~~--~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 273 (372)
|+.. ++|+|||+||..+... .++. .++.+++||++++++|.|++||++|++++.|++|++.|+++||+++|||++
T Consensus 502 a~~~~~~Pv~ir~~R~~~~~~--~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~r 579 (641)
T PLN02234 502 AAAIDDRPSCFRYHRGNGIGV--SLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADAR 579 (641)
T ss_pred HHhCCCCCEEEEeeccccccc--ccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 8865 6999999999765321 1221 235688999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhcc
Q 017410 274 TLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCF 318 (372)
Q Consensus 274 ~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~ 318 (372)
+++|||++.+.+.+++++.|||+|||.. ||+|++|++.+.++++
T Consensus 580 sikPlD~~~i~sl~k~~~~vVt~Ee~~~-GG~Gs~Va~~l~e~~~ 623 (641)
T PLN02234 580 FCKPLDVALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGL 623 (641)
T ss_pred CcCCCCHHHHHHHHHhCCEEEEECCCCC-CcHHHHHHHHHHHcCC
Confidence 9999999999888888888899999986 9999999999999874
No 18
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=1e-47 Score=405.16 Aligned_cols=289 Identities=13% Similarity=0.100 Sum_probs=233.0
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccc----cchhHHHHhCCCceEecchhHHHHHHHHHHHHh-cCC
Q 017410 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFR----CTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAA-MGN 110 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~----~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~-~G~ 110 (372)
.++++++|++++.+|.++++++|+++++++|+. ++.. ....|+++| |+||||+||+||+|+++|+|||+ .|+
T Consensus 351 ~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~--~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~ 427 (663)
T PRK12753 351 NPAKIATRKASQNTLEAYGPLLPELLGGSADLA--PSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGF 427 (663)
T ss_pred cccccHHHHHHHHHHHHHHhhCCCeEEEccccc--cccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCC
Confidence 456789999999999999999999999999997 3322 126799999 99999999999999999999999 799
Q ss_pred eeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCCH
Q 017410 111 RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRSP 187 (372)
Q Consensus 111 ~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~ 187 (372)
+||++ +|++|++|++||||+. |+++ + ||+++ ++.|. .|+||+||+ .+|+++||.||||+|+.|+|+
T Consensus 428 ~P~~~-tf~~F~~r~~~qir~~-a~~~--------l-~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~ 496 (663)
T PRK12753 428 VPYTA-TFLMFVEYARNAARMA-ALMK--------A-RQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQ 496 (663)
T ss_pred eEEEE-ehHHHHHHHHHHHHHH-HhcC--------C-CeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCH
Confidence 99999 6999999999999975 8665 5 88887 66665 588898886 689999999999999999999
Q ss_pred HHHHHHHHHhHh-CCCcEEEEecccccccccccCCCCC---ccccCCceEEeeeCC---cEEEEEeChhHHHHHHHHHHH
Q 017410 188 RQAKGLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDD---YMLPLSEAEVIREGS---DITLVGWGAQLSIMEQACLDA 260 (372)
Q Consensus 188 ~e~~~~l~~a~~-~~~Pv~ir~p~~l~r~~~~~v~~~~---~~~~~Gk~~v~~~g~---di~ii~~G~~~~~a~~Aa~~L 260 (372)
.|++.+++++++ .++|+|||++| .+.+.++... ..+..|+ ++++++. |++||++|+++.+|++|++.|
T Consensus 497 ~E~~~~~~~al~~~~gP~~irl~R----~~~~~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L 571 (663)
T PRK12753 497 VEAAVAWKLAIERHNGPTALILSR----QNLAQQERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKL 571 (663)
T ss_pred HHHHHHHHHHHhcCCCCEEEEecC----CCCCCCCCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence 999999999998 58999995554 4555454332 3466676 7788753 999999999999999999999
Q ss_pred HhcCCceeEEeecccCCCCHHHH--HHHHhc--CCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccC----
Q 017410 261 EKEGISCELIDLKTLIPWDKETV--EASVRK--TGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLD---- 332 (372)
Q Consensus 261 ~~~Gi~v~vi~~~~i~P~d~~~l--~~~~~~--~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~---- 332 (372)
+++||+++||+++|++|||++.+ ++.+.. ..+.|++|+|. +..++ +.. ..+..++|...
T Consensus 572 ~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~-----~~~~~----~~~----~~~~~~iGvd~Fg~s 638 (663)
T PRK12753 572 TAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGI-----ADYWY----KYV----GLKGAIIGMTGFGES 638 (663)
T ss_pred HhcCCCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccCh-----HHHHH----HHc----CCCCeEEEeCCCcCc
Confidence 99999999999999999999976 221111 12348999982 22222 211 23445565532
Q ss_pred CCcccccccCCCCcHHHHHHHHhC
Q 017410 333 TPFPLVFEPFYMPTKNKASCLESF 356 (372)
Q Consensus 333 ~~~~~lle~~~l~~~~~~~~i~~~ 356 (372)
.+.++++++|||+.++|+++++++
T Consensus 639 g~~~~l~~~~Glt~~~Iv~~i~~~ 662 (663)
T PRK12753 639 APADKLFPFFGFTVENIVAKAKKL 662 (663)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHh
Confidence 345578999999999999988753
No 19
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=1.1e-47 Score=404.93 Aligned_cols=288 Identities=16% Similarity=0.137 Sum_probs=236.2
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchh-----HHHHhCCCceEecchhHHHHHHHHHHHHh-cC
Q 017410 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTG-----LADRFGKSRVFNTPLCEQGIVGFAIGLAA-MG 109 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~-----~~~~~~p~r~i~~GIaE~~~vg~A~GlA~-~G 109 (372)
.+++.++|++++++|.++++++|+++++++|+. ++.. ++. |+++| |+||||+||+||+|+++|+|||+ .|
T Consensus 345 ~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~--~s~~-~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~gG 420 (653)
T TIGR00232 345 KLQALATRKYSQNVLNAIANVLPELLGGSADLA--PSNL-TKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALHGG 420 (653)
T ss_pred cCcchHHHHHHHHHHHHHHhhCCCEEEEeCCcc--ccCC-cccccccchhhcC-CCCeEeecccHHHHHHHHHHHHHcCC
Confidence 456679999999999999999999999999987 3322 333 88999 99999999999999999999999 78
Q ss_pred CeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCC
Q 017410 110 NRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRS 186 (372)
Q Consensus 110 ~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd 186 (372)
++||++ +|+.|++|++||||+. |+++ + |++++ ++.|. .|.+|+||+ .+|+++||+||||+|+.|+|
T Consensus 421 ~~p~~~-tf~~F~~r~~~~ir~~-a~~~--------l-pV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD 489 (653)
T TIGR00232 421 FKPYGG-TFLMFVDYARPAIRLA-ALMK--------L-PVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCD 489 (653)
T ss_pred CeEEEE-EhHHHHHHHHHHHHHH-HhcC--------C-CEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCC
Confidence 999999 6999999999999976 7654 5 88887 45554 578888886 68999999999999999999
Q ss_pred HHHHHHHHHHhH-hCCCcEEEEecccccccccccCCCCC-ccccCCceEEe--eeCCcEEEEEeChhHHHHHHHHHHHHh
Q 017410 187 PRQAKGLLLSCI-RDPNPVVFFEPKWLYRLSVEEVPEDD-YMLPLSEAEVI--REGSDITLVGWGAQLSIMEQACLDAEK 262 (372)
Q Consensus 187 ~~e~~~~l~~a~-~~~~Pv~ir~p~~l~r~~~~~v~~~~-~~~~~Gk~~v~--~~g~di~ii~~G~~~~~a~~Aa~~L~~ 262 (372)
+.|++.++++++ +.++|+|||++|. +.+.+++.+ ..+..|+ +++ ++|.|++||++|+++..|++|++.|++
T Consensus 490 ~~E~~~~~~~a~~~~~gP~~irl~r~----~~~~~~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~ 564 (653)
T TIGR00232 490 GNETAAAWKYALESQDGPTALILSRQ----NLPQLEESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAA 564 (653)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCC----ccCCCCcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHh
Confidence 999999999999 5689999977664 333333332 4567786 566 678999999999999999999999999
Q ss_pred cCCceeEEeecccCCCCHHH---HHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEec----cCCCc
Q 017410 263 EGISCELIDLKTLIPWDKET---VEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCG----LDTPF 335 (372)
Q Consensus 263 ~Gi~v~vi~~~~i~P~d~~~---l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~----~~~~~ 335 (372)
+||+++||+++|++|||++. +.+.+++++.+|++|||+. +||.. .+ ++ .. .++|. ...+.
T Consensus 565 ~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~-~g~~~----~~---~~---~~--~~igvd~fg~sg~~ 631 (653)
T TIGR00232 565 ENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTRLAVEAGAA-DEWYK----YA---GL---VG--AILGMDSFGESAPG 631 (653)
T ss_pred cCCcEEEEecccCcccccCCHHHHHHHhcccCceEEEecccH-hHHHH----hc---CC---cc--eEEEecCCcCCCCH
Confidence 99999999999999997754 7777877888999999975 55631 11 11 11 23443 23345
Q ss_pred ccccccCCCCcHHHHHHHHhC
Q 017410 336 PLVFEPFYMPTKNKASCLESF 356 (372)
Q Consensus 336 ~~lle~~~l~~~~~~~~i~~~ 356 (372)
++++++|||++++|+++++++
T Consensus 632 ~~L~~~~Glt~e~I~~~i~~~ 652 (653)
T TIGR00232 632 DKLFEEFGFTVENVVAKAKKL 652 (653)
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 688999999999999988753
No 20
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=2e-47 Score=402.61 Aligned_cols=286 Identities=16% Similarity=0.168 Sum_probs=235.7
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHH------HHhCCCceEecchhHHHHHHHHHHHHhcC-
Q 017410 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLA------DRFGKSRVFNTPLCEQGIVGFAIGLAAMG- 109 (372)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~------~~~~p~r~i~~GIaE~~~vg~A~GlA~~G- 109 (372)
++++++|++|+++|.+++++||+++++++|++.+ ++ +..+. ++| |+||||+||+||+|+++|+|||+.|
T Consensus 316 ~~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~-~~--~~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~ 391 (624)
T PRK05899 316 GEKVATRKASGKALNALAKALPELVGGSADLAGS-NN--TKIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGG 391 (624)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCCccc-cC--cccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCC
Confidence 3677889999999999999999999999999732 21 33343 578 8999999999999999999999999
Q ss_pred CeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCC
Q 017410 110 NRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRS 186 (372)
Q Consensus 110 ~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd 186 (372)
++||++ +|+.|++|++|||++. ++++ + |++++ +++|. .|.+|+||+ .+|+++||++|||+|++|+|
T Consensus 392 ~~pv~~-t~~~F~~r~~~qir~~-~~~~--------~-pv~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d 460 (624)
T PRK05899 392 FIPFGG-TFLVFSDYARNAIRLA-ALMK--------L-PVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPAD 460 (624)
T ss_pred CeEEEE-EcHHHHHHHHHHHHHH-HhcC--------C-CEEEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCC
Confidence 999999 6999999999999975 6543 5 88887 67776 567788885 68999999999999999999
Q ss_pred HHHHHHHHHHhHhC-CCcEEEEecccccccccccCCCC--CccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhc
Q 017410 187 PRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPED--DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKE 263 (372)
Q Consensus 187 ~~e~~~~l~~a~~~-~~Pv~ir~p~~l~r~~~~~v~~~--~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~ 263 (372)
+.|++.+++++++. ++|+|||++|. +.+.++++ .+.++.|+ +++++|.|++||++|+++.+|++|++.|+++
T Consensus 461 ~~e~~~~l~~a~~~~~~P~~ir~~r~----~~~~~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~ 535 (624)
T PRK05899 461 ANETAAAWKYALERKDGPSALVLTRQ----NLPVLERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADELEAE 535 (624)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEeCC----CCCCcCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhc
Confidence 99999999999998 89999987753 33333332 25678887 7889999999999999999999999999999
Q ss_pred CCceeEEeecccCCCCHHH---HHHHH-hcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCC----Cc
Q 017410 264 GISCELIDLKTLIPWDKET---VEASV-RKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT----PF 335 (372)
Q Consensus 264 Gi~v~vi~~~~i~P~d~~~---l~~~~-~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~----~~ 335 (372)
||+++|||+++++|||++. +...+ .....++++|++. .+||... +..++.++|.++. +.
T Consensus 536 gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~-~~g~~~~------------~~~~~~~iGv~~f~~~g~~ 602 (624)
T PRK05899 536 GIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGV-ADGWYKY------------VGLDGKVLGIDTFGASAPA 602 (624)
T ss_pred CCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCC-ccchhhh------------cCCCceEEECCCCCCCCCH
Confidence 9999999999999999983 44444 3445778888776 4777221 1335678888772 22
Q ss_pred ccccccCCCCcHHHHHHHHh
Q 017410 336 PLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 336 ~~lle~~~l~~~~~~~~i~~ 355 (372)
++++++|||+.++|++++.+
T Consensus 603 ~~l~~~~gl~~~~I~~~i~~ 622 (624)
T PRK05899 603 DELFKEFGFTVENIVAAAKE 622 (624)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 36899999999999998875
No 21
>PLN02790 transketolase
Probab=100.00 E-value=1.9e-46 Score=395.70 Aligned_cols=291 Identities=14% Similarity=0.162 Sum_probs=237.3
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCc--cccchhHHHH-hCCCceEecchhHHHHHHHHHHHHhc--CC
Q 017410 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGV--FRCTTGLADR-FGKSRVFNTPLCEQGIVGFAIGLAAM--GN 110 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~--~~~~~~~~~~-~~p~r~i~~GIaE~~~vg~A~GlA~~--G~ 110 (372)
..+++++|++++++|..+++.+|+++++++|+..+.. +..+.+|+++ | |+||||+||+||+|+++|+|||+. |+
T Consensus 340 ~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~-p~Rfi~~GIaEq~mv~~AaGlA~~G~G~ 418 (654)
T PLN02790 340 EDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSSGL 418 (654)
T ss_pred cCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCC-CCCeEEeeechHHHHHHHHHHHhcCCCc
Confidence 3445789999999999999999999999999972211 1125789888 6 999999999999999999999995 69
Q ss_pred eeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCCH
Q 017410 111 RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRSP 187 (372)
Q Consensus 111 ~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~ 187 (372)
+||++ +|+.|+.|+++|||+. |+++ + |++++ ++.|. +|+||+||+ .+|+++||+||||+|+.|+|+
T Consensus 419 ~P~~~-tf~~F~~~~~~~ir~~-al~~--------l-pV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~ 487 (654)
T PLN02790 419 IPYCA-TFFVFTDYMRAAMRLS-ALSE--------A-GVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADG 487 (654)
T ss_pred EEEEE-ecHHHHHHHHHHHHHH-HhcC--------C-CeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCH
Confidence 99999 6999999999999875 8765 5 88887 45453 588898887 689999999999999999999
Q ss_pred HHHHHHHHHhHh-CCCcEEEEecccccccccccCCCC-CccccCCceEEeeeC-----CcEEEEEeChhHHHHHHHHHHH
Q 017410 188 RQAKGLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPED-DYMLPLSEAEVIREG-----SDITLVGWGAQLSIMEQACLDA 260 (372)
Q Consensus 188 ~e~~~~l~~a~~-~~~Pv~ir~p~~l~r~~~~~v~~~-~~~~~~Gk~~v~~~g-----~di~ii~~G~~~~~a~~Aa~~L 260 (372)
.|++.+++++++ .++|+|||++|. +.+.++.. ...++.|+ ++++++ .|++||++|+++.+|++|++.|
T Consensus 488 ~E~~~~l~~al~~~~gP~~irl~R~----~~~~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L 562 (654)
T PLN02790 488 NETAGAYKVAVTNRKRPTVLALSRQ----KVPNLPGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKEL 562 (654)
T ss_pred HHHHHHHHHHHHcCCCCEEEEecCC----CCCCCCCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHH
Confidence 999999999998 579999976664 44444332 35578887 556663 7999999999999999999999
Q ss_pred HhcCCceeEEeecccCCCCHHHHH---HHH-hcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEecc----C
Q 017410 261 EKEGISCELIDLKTLIPWDKETVE---ASV-RKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGL----D 332 (372)
Q Consensus 261 ~~~Gi~v~vi~~~~i~P~d~~~l~---~~~-~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~----~ 332 (372)
+++||+++||+++|++|||++.+. +.+ ++++.+|++|+|.. +||++.+ ..+..++|.. .
T Consensus 563 ~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~-~G~~~~~------------~~~~~~igvd~Fg~s 629 (654)
T PLN02790 563 RKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGST-FGWEKYV------------GSKGKVIGVDRFGAS 629 (654)
T ss_pred HhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccc-hhHHHhc------------CCCceEEEeCCCcCc
Confidence 999999999999999999998744 556 56678999999974 8886522 1122345442 2
Q ss_pred CCcccccccCCCCcHHHHHHHHhC
Q 017410 333 TPFPLVFEPFYMPTKNKASCLESF 356 (372)
Q Consensus 333 ~~~~~lle~~~l~~~~~~~~i~~~ 356 (372)
.+.++++++|||++++|+++++++
T Consensus 630 g~~~~l~~~~Glt~e~I~~~i~~~ 653 (654)
T PLN02790 630 APAGILYKEFGFTVENVVAAAKSL 653 (654)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHh
Confidence 344578999999999999988753
No 22
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=8.7e-47 Score=398.63 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=233.9
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccc-----hhHHHHhCC-CceEecchhHHHHHHHHHHHHh-c
Q 017410 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCT-----TGLADRFGK-SRVFNTPLCEQGIVGFAIGLAA-M 108 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~-----~~~~~~~~p-~r~i~~GIaE~~~vg~A~GlA~-~ 108 (372)
.+++.++|++++++|.++++.+|+++++++|+. ++.. + .+|+++| | +||||+||+||+|+++|+|||+ .
T Consensus 351 ~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~--~s~~-~~~~~~~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~~~ 426 (661)
T PTZ00089 351 NDKAIATRKASENVLNPLFQILPELIGGSADLT--PSNL-TRPKEANDFTKAS-PEGRYIRFGVREHAMCAIMNGIAAHG 426 (661)
T ss_pred cCcchHHHHHHHHHHHHHHhhCCCeEEEECCCC--cccC-cCCcccccccccC-CCCCeeeeeecHHHHHHHHHHHHHcC
Confidence 355688999999999999999999999999996 3322 2 3798999 9 8999999999999999999999 8
Q ss_pred CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCC-CCCCCCCCCC-hhHHHHHcCCCCcEEEeeC
Q 017410 109 GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYG-AVGHGGHYHS-QSPEAFFCHVPGLKVVIPR 185 (372)
Q Consensus 109 G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G-~~g~~G~~Hs-~~d~a~l~~iP~l~V~~Ps 185 (372)
|++||++ +|++|++|++||||+. |+++ + |++++ ++.| .+|+||+||| .+|+++||+||||+|+.|+
T Consensus 427 G~~P~~~-tf~~Fl~Ra~dqir~~-al~~--------l-pV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~Pa 495 (661)
T PTZ00089 427 GFIPFGA-TFLNFYGYALGAVRLA-ALSH--------H-PVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPA 495 (661)
T ss_pred CCeEEEE-ehHHHHHHHHHHHHHH-HhcC--------C-CeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecC
Confidence 9999999 6999999999998865 8765 5 88887 4655 3688898887 6899999999999999999
Q ss_pred CHHHHHHHHHHhHh-CCCcEEEEecccccccccccCCCCCccccCCceEEeeeC---CcEEEEEeChhHHHHHHHHHHHH
Q 017410 186 SPRQAKGLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREG---SDITLVGWGAQLSIMEQACLDAE 261 (372)
Q Consensus 186 d~~e~~~~l~~a~~-~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g---~di~ii~~G~~~~~a~~Aa~~L~ 261 (372)
|+.|++.+++++++ .++|+|||++|. +.+.++.....+..++.++++++ .|++||++|+++..|++|++.|+
T Consensus 496 D~~E~~~~l~~al~~~~gP~~irl~R~----~~~~~~~~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~ 571 (661)
T PTZ00089 496 DGTETSGAYALALANAKTPTILCLSRQ----NTPPLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALS 571 (661)
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEecCC----CCCCcCCCccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHh
Confidence 99999999999994 589999966654 44444444344556677788874 79999999999999999999999
Q ss_pred hcCCceeEEeecccCCCCHHHHHHH---Hh-cCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccC----C
Q 017410 262 KEGISCELIDLKTLIPWDKETVEAS---VR-KTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLD----T 333 (372)
Q Consensus 262 ~~Gi~v~vi~~~~i~P~d~~~l~~~---~~-~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~----~ 333 (372)
+ |++++||+++|++|||.+.+... +. +...++++|++.. .||... . ..++|.++ .
T Consensus 572 ~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~-~g~~~~-------------~--~~~igv~~Fg~sg 634 (661)
T PTZ00089 572 K-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVS-FGWEKY-------------S--HVHVGISGFGASA 634 (661)
T ss_pred c-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHH-HHHHhc-------------C--CeEEECCCccccC
Confidence 9 99999999999999999976533 33 4456899999975 344210 1 12455444 3
Q ss_pred CcccccccCCCCcHHHHHHHHhC
Q 017410 334 PFPLVFEPFYMPTKNKASCLESF 356 (372)
Q Consensus 334 ~~~~lle~~~l~~~~~~~~i~~~ 356 (372)
+.++++++|||+.++|+++++++
T Consensus 635 ~~~~l~~~~Gl~~e~I~~~i~~~ 657 (661)
T PTZ00089 635 PANALYKHFGFTVENVVEKARAL 657 (661)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHH
Confidence 44578999999999999998753
No 23
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=377.27 Aligned_cols=297 Identities=21% Similarity=0.288 Sum_probs=242.8
Q ss_pred CCCCc-ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCC-ee
Q 017410 35 GSGKS-LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGN-RA 112 (372)
Q Consensus 35 ~~~~~-~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~-~p 112 (372)
+-+.+ +++|++|+++|.++++.+|+++.+++|+..+ . .++-|.++| |+|||++||+||||+++|+|+|..|. +|
T Consensus 314 k~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~s--t-~td~~~~~~-p~R~i~~giaEq~mv~ia~G~a~~g~~~P 389 (632)
T KOG0523|consen 314 KVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNS--T-LTDFFPKRF-PERFIECGIAEQNMVGIANGIACRGRTIP 389 (632)
T ss_pred ccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCC--c-hhhhccccC-ccceEEEeeehhhhHHhhhchhcCCCccc
Confidence 44555 8999999999999999999999999999843 2 256678899 99999999999999999999999997 99
Q ss_pred EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eC-CCCCCCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHH
Q 017410 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-AP-YGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQ 189 (372)
Q Consensus 113 i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~-~G~~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e 189 (372)
|+. +|+.|++|||||+|+++-.+ . +++.+ ++ ++..|+||++|+ .+|+++||+|||++|+.|+|..|
T Consensus 390 f~~-tf~~F~trA~dqvr~~a~s~---------~-~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~PaD~~e 458 (632)
T KOG0523|consen 390 FCG-TFAAFFTRAFDQVRMGALSQ---------A-NVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGNE 458 (632)
T ss_pred hhH-HHHHHHHHhhhheeehhhcc---------C-CcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEecCchHH
Confidence 999 69999999999999876422 2 44444 55 446799999998 58999999999999999999999
Q ss_pred HHHHHHHhHhCCC-cEEEEecccccccccccCCCCCccccCCceE-EeeeCC-cEEEEEeChhHHHHHHHHHHHHhcCCc
Q 017410 190 AKGLLLSCIRDPN-PVVFFEPKWLYRLSVEEVPEDDYMLPLSEAE-VIREGS-DITLVGWGAQLSIMEQACLDAEKEGIS 266 (372)
Q Consensus 190 ~~~~l~~a~~~~~-Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~-v~~~g~-di~ii~~G~~~~~a~~Aa~~L~~~Gi~ 266 (372)
+..++..|++.++ |.++ ++.|+..+.+ +....+++||.+ +++++. |++||++|+++++|++|++.|+++||+
T Consensus 459 t~~av~~Aa~~~~~p~i~----~~~r~~~~~~-~~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~~~gi~ 533 (632)
T KOG0523|consen 459 TENAVATAANTKGTPSIR----TLSRQNLPIY-NNTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLSEDGIK 533 (632)
T ss_pred HHHHHHHHHhcCCCeeEE----EecCcccccc-CCCchhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHHhcCce
Confidence 9999999999866 9988 4444444444 333447788877 566665 999999999999999999999999999
Q ss_pred eeEEeecccCCCCHHHHHHHHhcCC-eEEEEcCCCCCCcHHHHHHHHHHHhccccCCC-cEEEEe----ccCCCcccccc
Q 017410 267 CELIDLKTLIPWDKETVEASVRKTG-RLLISHEAPVTGGFGAEISASILERCFLRLEA-PVARVC----GLDTPFPLVFE 340 (372)
Q Consensus 267 v~vi~~~~i~P~d~~~l~~~~~~~~-~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~-~v~~ig----~~~~~~~~lle 340 (372)
++|+|+++++|||...|.+..+.++ ++.|+|+|+..||++.++.....+. +. .+..++ +...+.+++|+
T Consensus 534 vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~-----~~~~~~~~~~~~~~~sG~p~ell~ 608 (632)
T KOG0523|consen 534 VRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKY-----PGILVPSLGVDTFGRSGPPPELLK 608 (632)
T ss_pred EEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehhccc-----CCccceeeccccCCcCCCCHHHHH
Confidence 9999999999999999999888876 6667788887778888776554432 22 222332 23345668899
Q ss_pred cCCCCcHHHHHHHHhC
Q 017410 341 PFYMPTKNKASCLESF 356 (372)
Q Consensus 341 ~~~l~~~~~~~~i~~~ 356 (372)
.|||+..+|+++++++
T Consensus 609 ~fGit~~~Ia~~a~~~ 624 (632)
T KOG0523|consen 609 MFGITARHIAAAALSL 624 (632)
T ss_pred HhCCCHHHHHHHHHHH
Confidence 9999999988877664
No 24
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=5.2e-46 Score=390.51 Aligned_cols=292 Identities=13% Similarity=0.121 Sum_probs=234.8
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccc----cchhHHHHhCCCceEecchhHHHHHHHHHHHHh-cCCe
Q 017410 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFR----CTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAA-MGNR 111 (372)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~----~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~-~G~~ 111 (372)
.+++++|++++++|.++++++|+++++++|+. ++.. ....|+++| |+||||+||+||+|+++|+|||+ .|++
T Consensus 352 ~~~~atR~~~~~~L~~la~~~~~lv~~sADl~--~s~~~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~ 428 (663)
T PRK12754 352 PAKIASRKASQNAIEAFGPLLPEFLGGSADLA--PSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFL 428 (663)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcc--cccCccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCe
Confidence 45679999999999999999999999999987 3322 246788999 99999999999999999999999 6899
Q ss_pred eEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCCHH
Q 017410 112 AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPR 188 (372)
Q Consensus 112 pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~ 188 (372)
||++ +|+.|+.|++||||++ |+++ + |++++ ++.|. .|+||+||+ .+|+++||+||||+|+.|+|+.
T Consensus 429 Pf~~-tf~~F~~r~~~qir~~-a~~~--------l-~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~ 497 (663)
T PRK12754 429 PYTS-TFLMFVEYARNAVRMA-ALMK--------Q-RQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQV 497 (663)
T ss_pred EEEE-eeHHHHHHHHHHHHHH-HHcC--------C-CeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHH
Confidence 9999 6999999999999986 7665 5 88887 56664 588888886 6899999999999999999999
Q ss_pred HHHHHHHHhHhC-CCcEEEEecccccccccccCCCC---CccccCCceEEeeeCC---cEEEEEeChhHHHHHHHHHHHH
Q 017410 189 QAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPED---DYMLPLSEAEVIREGS---DITLVGWGAQLSIMEQACLDAE 261 (372)
Q Consensus 189 e~~~~l~~a~~~-~~Pv~ir~p~~l~r~~~~~v~~~---~~~~~~Gk~~v~~~g~---di~ii~~G~~~~~a~~Aa~~L~ 261 (372)
|+..+++++++. ++|+|| |+.|++.+.++.. ...+..|+ ++++++. |++||++|+++.+|++|++.|+
T Consensus 498 E~~~~~~~a~~~~~gP~yi----rl~R~~~p~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~ 572 (663)
T PRK12754 498 ESAVAWKYGVERQDGPTAL----ILSRQNLAQQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLT 572 (663)
T ss_pred HHHHHHHHHHhCCCCCEEE----EeCCCCCCCCCCccchhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHH
Confidence 999999999987 799999 5555555555431 13466776 6778764 9999999999999999999999
Q ss_pred hcCCceeEEeecccCCCCHH--HHHHHHhcCC--eEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCccc
Q 017410 262 KEGISCELIDLKTLIPWDKE--TVEASVRKTG--RLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPL 337 (372)
Q Consensus 262 ~~Gi~v~vi~~~~i~P~d~~--~l~~~~~~~~--~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~ 337 (372)
++||+++||+++|++|||++ ..++.+-... ..|++|.+. ..||...+ ..++. ..-+.++ +...+...
T Consensus 573 ~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~-~~~w~~~~----~~~~~---~igi~~F-G~Sg~~~~ 643 (663)
T PRK12754 573 AEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGI-ADYWYKYV----GLNGA---IVGMTTF-GESAPAEL 643 (663)
T ss_pred hhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeeccc-ccchhhhc----cCCCC---EEEeCCC-CCCCCHHH
Confidence 99999999999999999987 3333332221 348889874 67776654 22221 1112344 24446668
Q ss_pred ccccCCCCcHHHHHHHHhC
Q 017410 338 VFEPFYMPTKNKASCLESF 356 (372)
Q Consensus 338 lle~~~l~~~~~~~~i~~~ 356 (372)
++|+|||++++|++++++.
T Consensus 644 l~~~~G~t~e~I~~~~~~~ 662 (663)
T PRK12754 644 LFEEFGFTVDNVVAKAKAL 662 (663)
T ss_pred HHHHhCCCHHHHHHHHHHh
Confidence 9999999999999998753
No 25
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=3.9e-43 Score=373.33 Aligned_cols=310 Identities=9% Similarity=0.049 Sum_probs=251.7
Q ss_pred CCCCcccHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCcccc------------------------chhHHHHhCCCc
Q 017410 35 GSGKSLNLYSAINQALHIALET---DPRAYVFGEDVGFGGVFRC------------------------TTGLADRFGKSR 87 (372)
Q Consensus 35 ~~~~~~~~~~a~~~~L~~l~~~---d~~vv~i~aD~~~gg~~~~------------------------~~~~~~~~~p~r 87 (372)
..++++++++||+++|.+|++. +++||.+.+|+. .+|+. +..|+++| |+|
T Consensus 490 ~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a--~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgR 566 (891)
T PRK09405 490 SGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEA--RTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQ 566 (891)
T ss_pred CCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccc--cccCcchhhccccccccccccccccccHHHHHHHHcC-CCc
Confidence 3468899999999999999996 999999999988 44441 25678899 999
Q ss_pred eEecchhHHHHHH--HHHHHHhc----CCeeEEEeccccc-HHHHHHHHHHHHHhhhhhcCCCcccccEEEEe-CCCCC-
Q 017410 88 VFNTPLCEQGIVG--FAIGLAAM----GNRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAV- 158 (372)
Q Consensus 88 ~i~~GIaE~~~vg--~A~GlA~~----G~~pi~~i~~~~F-~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~-~~G~~- 158 (372)
|||+||+||+|++ +|+|+|++ |++||+. +|+.| ++|++|||++++++++ . ++++.+ ++|.+
T Consensus 567 f~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~-tya~F~~~Ra~Dqir~a~~~~~--------~-~v~iggt~gg~tl 636 (891)
T PRK09405 567 ILQEGINEAGAMASWIAAATSYSTHGEPMIPFYI-YYSMFGFQRIGDLAWAAGDQRA--------R-GFLLGGTAGRTTL 636 (891)
T ss_pred EEEechhhhHHHHHHHHHHHhhhhcCCCceEEEE-ehHHhhhhhHHHHHHHHHHhcC--------C-CeEEEEECccccC
Confidence 9999999999999 99999999 8899999 69999 6999999999998654 4 777764 45543
Q ss_pred CCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCC--cEEEEecccccccccccCCCCCccccCCc
Q 017410 159 GHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPN--PVVFFEPKWLYRLSVEEVPEDDYMLPLSE 231 (372)
Q Consensus 159 g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~--Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk 231 (372)
++.|.+|+ .+|+.++|+||||+|++|+|+.|++.+++++++ ..+ |+|+|....-+. .+.. ++++.+.+||
T Consensus 637 ~~eG~qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~--~~~~-pe~~~~~igK 713 (891)
T PRK09405 637 NGEGLQHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYH--QPAM-PEGAEEGILK 713 (891)
T ss_pred CCCcccCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCC--CCCC-Ccccccccce
Confidence 55666674 789999999999999999999999999999877 555 777854311000 1112 2356688899
Q ss_pred e-EEeeeCC------cEEEEEeChhHHHHHHHHHHHHh-cCCceeEEeecccCCCCHHHHHHHH---------hcCCeEE
Q 017410 232 A-EVIREGS------DITLVGWGAQLSIMEQACLDAEK-EGISCELIDLKTLIPWDKETVEASV---------RKTGRLL 294 (372)
Q Consensus 232 ~-~v~~~g~------di~ii~~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~i~P~d~~~l~~~~---------~~~~~vi 294 (372)
. +++++|. +++|+++|.++.+|++|++.|++ +||+++|+++.++||||.+.+.... +++..|+
T Consensus 714 g~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~ 793 (891)
T PRK09405 714 GMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVT 793 (891)
T ss_pred EEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhh
Confidence 6 8899876 89999999999999999999998 7999999999999999999987766 5677888
Q ss_pred EEcCCCCCCcHH-------HHHHHHHHHhccccCCCcEEEEeccCC-----CcccccccCCCCcHHHHHHHHhC-----C
Q 017410 295 ISHEAPVTGGFG-------AEISASILERCFLRLEAPVARVCGLDT-----PFPLVFEPFYMPTKNKASCLESF-----K 357 (372)
Q Consensus 295 vvEe~~~~GGlg-------~~i~~~l~~~~~~~l~~~v~~ig~~~~-----~~~~lle~~~l~~~~~~~~i~~~-----~ 357 (372)
++|+| .||++ +.|++.|.+.. +.++.++|. |. +.+++++.|||+.++|++++.++ .
T Consensus 794 t~ee~--~gG~~Vtv~D~~~aVae~la~~~----p~~~~~LGv-D~FG~SGt~~~L~~~fglda~~Iv~aal~~La~~g~ 866 (891)
T PRK09405 794 QVLKG--AEGPVVAATDYMKLFAEQIRAFV----PGDYVVLGT-DGFGRSDTREALRRFFEVDAEYVVVAALKALADEGE 866 (891)
T ss_pred hhhcc--cCCcEEEecchHHHHHHHHHHhC----CCCEEEEec-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 88888 68888 89999998763 678999987 43 23478999999999999877652 3
Q ss_pred CChHHHHHhh
Q 017410 358 VPAQHCCMNL 367 (372)
Q Consensus 358 ~~~~~~~~~~ 367 (372)
+++..++.++
T Consensus 867 ~~~~~~~~a~ 876 (891)
T PRK09405 867 IDASVVAEAI 876 (891)
T ss_pred CCHHHHHHHH
Confidence 4444444444
No 26
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=2.7e-43 Score=374.48 Aligned_cols=295 Identities=15% Similarity=0.127 Sum_probs=245.5
Q ss_pred CCCcccHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCccc------------------------cchhHHHHhCCCce
Q 017410 36 SGKSLNLYSAINQALHIALET---DPRAYVFGEDVGFGGVFR------------------------CTTGLADRFGKSRV 88 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~---d~~vv~i~aD~~~gg~~~------------------------~~~~~~~~~~p~r~ 88 (372)
.+++++++.||++.|.+|++. .++||.+.+|.. .+|+ .+..+++.+ |+||
T Consensus 486 ~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a--~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~ 562 (889)
T TIGR03186 486 EGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEA--RTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQI 562 (889)
T ss_pred CCCcccHHHHHHHHHHHHHhCccccCCEEEeCCccc--ccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcE
Confidence 568899999999997777765 688999999987 4441 134466788 9999
Q ss_pred EecchhHHHHHH--HHHHHHhc----CCeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC--C
Q 017410 89 FNTPLCEQGIVG--FAIGLAAM----GNRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA--V 158 (372)
Q Consensus 89 i~~GIaE~~~vg--~A~GlA~~----G~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~--~ 158 (372)
+|+||+||+|++ +|+|+|++ |++||+. +|+.|. +|++|||+++ |+++ . +++++ +++|. .
T Consensus 563 ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~-tya~F~~~Ra~Dqir~a-~~~~--------a-~v~lvG~~aG~tTl 631 (889)
T TIGR03186 563 LEEGISEAGAISSWIAAATSYSVHDLPMLPFYI-YYSMFGFQRIGDLIWAA-ADQR--------A-RGFLIGATSGKTTL 631 (889)
T ss_pred EEechhhHHHHHHHHHHHHhhhhcCCCceEEEE-ehHHhHhhhHHHHHHHH-hhcC--------C-CcEEEEECCCccCC
Confidence 999999999999 99999999 8899999 699995 9999999988 6544 3 55555 56776 4
Q ss_pred CCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh------CCCcEEEEeccccccccc--ccCCCCC-cccc
Q 017410 159 GHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR------DPNPVVFFEPKWLYRLSV--EEVPEDD-YMLP 228 (372)
Q Consensus 159 g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~------~~~Pv~ir~p~~l~r~~~--~~v~~~~-~~~~ 228 (372)
+++|.+|+ .+|++++|+||||+|+.|+|+.|++.+++++++ .++|+|| |++|.+. +.++.++ ..++
T Consensus 632 g~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~Yl----Rl~r~~~~~p~~~~~~~~~~~ 707 (889)
T TIGR03186 632 GGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYL----TVTNENYAQPSLPEDRLDAVR 707 (889)
T ss_pred CCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEE----EeCCCCCCCCCcCCCcccchh
Confidence 66777775 799999999999999999999999999999887 6799999 5554443 4444443 2355
Q ss_pred CCc--e-EEee----eCCcEEEEEeChhHHHHHHHHHHHHhc-CCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC-
Q 017410 229 LSE--A-EVIR----EGSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA- 299 (372)
Q Consensus 229 ~Gk--~-~v~~----~g~di~ii~~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~- 299 (372)
.|+ . ++++ +|.+++|+++|.++++|++|++.|+++ ||+++|+++.++||||++.+. +++++.++++|||
T Consensus 708 ~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~ 785 (889)
T TIGR03186 708 RGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPP 785 (889)
T ss_pred cchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCcccccccc
Confidence 654 4 6677 578999999999999999999999998 999999999999999999986 7888999999998
Q ss_pred --CCCCcHHH-------------HHHHHHHHhccccCCCcEEEEeccCCC-----cccccccCCCCcHHHHHHHHh
Q 017410 300 --PVTGGFGA-------------EISASILERCFLRLEAPVARVCGLDTP-----FPLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 300 --~~~GGlg~-------------~i~~~l~~~~~~~l~~~v~~ig~~~~~-----~~~lle~~~l~~~~~~~~i~~ 355 (372)
++.|||++ .+++.|.+.. +.++.++|. |.+ .+++++.|+++.++|+.++..
T Consensus 786 ~~~v~ggLg~~~~p~va~~D~~~avae~i~~~~----p~~~~~LG~-D~FG~Sgtr~~Lr~~fglda~~Iv~aal~ 856 (889)
T TIGR03186 786 SPHVAQALGATQGPVIAATDYVRAVPELIRAYV----PRRYVTLGT-DGFGRSDTRAALRAFFEVDRASIVIAALQ 856 (889)
T ss_pred cccHhhhhCCCCCCeeeecchHHHHHHHHHhhC----CCCEEEecc-CCCCCcCCHHHHHHHhCCCHHHHHHHHHH
Confidence 89999999 9999998863 678999987 543 347899999999999887655
No 27
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=2.7e-42 Score=306.25 Aligned_cols=165 Identities=58% Similarity=0.957 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCC-ceEecchhHHHHHHHHHHHHhcCCeeEEEeccccc
Q 017410 44 SAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKS-RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADY 121 (372)
Q Consensus 44 ~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~-r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F 121 (372)
++++++|.+++++||+++++++|++ .||++..+++|+++| |+ ||+|+||+||+|+|+|+|||++|++||++++|++|
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~-p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~F 79 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKF-GPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADF 79 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhC-CCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHH
Confidence 4789999999999999999999987 355666689999999 88 99999999999999999999999999999789999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCC
Q 017410 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDP 201 (372)
Q Consensus 122 ~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~ 201 (372)
++|+||||++++|+++|+++++.++ ||+++.++|..+++|+||+++|+++||+||||+|++|+|+.|++.+++++++.+
T Consensus 80 l~ra~dQi~~~~a~~~~~~~~~~~~-pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~ 158 (167)
T cd07036 80 ALPAFDQIVNEAAKLRYMSGGQFKV-PIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDD 158 (167)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccC-CEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999 999998766677788899999999999999999999999999999999999999
Q ss_pred CcEEEEecc
Q 017410 202 NPVVFFEPK 210 (372)
Q Consensus 202 ~Pv~ir~p~ 210 (372)
+|+++++||
T Consensus 159 ~P~~~~e~k 167 (167)
T cd07036 159 DPVIFLEHK 167 (167)
T ss_pred CcEEEEecC
Confidence 999999986
No 28
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=6.9e-40 Score=349.81 Aligned_cols=301 Identities=13% Similarity=0.114 Sum_probs=233.8
Q ss_pred CCCcccHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCcccc------------------------chhHHHHhCCCce
Q 017410 36 SGKSLNLYSAINQALHIALET---DPRAYVFGEDVGFGGVFRC------------------------TTGLADRFGKSRV 88 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~---d~~vv~i~aD~~~gg~~~~------------------------~~~~~~~~~p~r~ 88 (372)
.++++++|+||+++|.++++. +++||.+++|+. .+|+. +..|+++| |+||
T Consensus 499 ~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla--~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ 575 (896)
T PRK13012 499 GGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEA--RTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQI 575 (896)
T ss_pred CCCcchHHHHHHHHHHHHHhccccCCCEEEeccccc--cccCcccccccccccccccccccccchhHHhhhhhCC-CCcE
Confidence 568899999999999999988 999999999987 33321 23466888 9999
Q ss_pred EecchhHHHHHH--HHHHHHhc----CCeeEEEeccccc-HHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CCC-CC
Q 017410 89 FNTPLCEQGIVG--FAIGLAAM----GNRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA-VG 159 (372)
Q Consensus 89 i~~GIaE~~~vg--~A~GlA~~----G~~pi~~i~~~~F-~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G~-~g 159 (372)
|++||+||+|++ +|+|+|++ |++||+. +|+.| .+|++||++++++++. . +++++++ +|. .+
T Consensus 576 ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~-tfs~F~~~R~~Dqir~a~~~~~--------~-~vlig~T~gg~tlg 645 (896)
T PRK13012 576 LEEGITEAGAISSWIAAATSYSVHGLPMLPFYI-YYSMFGFQRVGDLIWAAADQRA--------R-GFLLGATAGRTTLG 645 (896)
T ss_pred EecchhhhhhhHHHHHHHhhHHhcCCCcEEEEE-ehHHHHHHHHHHHHHHHHhccc--------C-CeEEEEeCcccccC
Confidence 999999999999 99999887 7799999 79999 6999999999887542 3 6777654 443 46
Q ss_pred CCCCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C--CCcEEEEeccccccccc--ccCCCC-CccccC
Q 017410 160 HGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D--PNPVVFFEPKWLYRLSV--EEVPED-DYMLPL 229 (372)
Q Consensus 160 ~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~--~~Pv~ir~p~~l~r~~~--~~v~~~-~~~~~~ 229 (372)
++|.||+ .++++++|+|||++|+.|+|+.|+..+++++++ . +.|+|| +++|.+. +.++++ +..|..
T Consensus 646 ~dG~THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YI----rL~r~~~~~p~~~~~~~~~i~k 721 (896)
T PRK13012 646 GEGLQHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYL----TVMNENYAQPALPEGAEEGILK 721 (896)
T ss_pred CCCCCCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEE----EecCCCCCCCCCCccchhcccc
Confidence 7888886 789999999999999999999999999999873 2 689999 5555544 234433 345667
Q ss_pred CceEEe--eeCCcEEEEEeChhHHHHHHHHHHHHhc-CCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHH
Q 017410 230 SEAEVI--REGSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFG 306 (372)
Q Consensus 230 Gk~~v~--~~g~di~ii~~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg 306 (372)
|++.+. +++.+++||++|+++.+|++|++.|+++ ||+++|+++.|++|||.+.+.. |||+..||++
T Consensus 722 G~y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~-----------E~hn~~gglg 790 (896)
T PRK13012 722 GMYRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA-----------ERANLLGPAE 790 (896)
T ss_pred CcEEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH-----------HHHhhcCCCc
Confidence 774442 3356999999999999999999999999 9999999999999999997732 5555555555
Q ss_pred ----H---------------------HHHHHHHHhccccCCCcEEEEeccCC----CcccccccCCCCcHHHHHHHHhC-
Q 017410 307 ----A---------------------EISASILERCFLRLEAPVARVCGLDT----PFPLVFEPFYMPTKNKASCLESF- 356 (372)
Q Consensus 307 ----~---------------------~i~~~l~~~~~~~l~~~v~~ig~~~~----~~~~lle~~~l~~~~~~~~i~~~- 356 (372)
+ .|++.+.+. .+.++.++|...+ +.+.+++.||++.++|++++.++
T Consensus 791 ~~~~sy~~~~l~~~~~p~Va~~D~~~aVae~l~~~----~~~~~~~LGvD~FG~Sg~~~~L~~~fGlda~~Iv~aal~~L 866 (896)
T PRK13012 791 EARVPYVTQCLAGTRGPVVAATDYVRAVPEQIRAF----VPARYVTLGTDGFGRSDTRAALRRFFEVDRHSIVLAALKAL 866 (896)
T ss_pred cccccHHHHhhcccCCCeEEecchHHHHHHHHHHh----CCCCeEEEeeCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3 555566554 2567778876322 34578999999999999877653
Q ss_pred ----CCChHHHHHhhh
Q 017410 357 ----KVPAQHCCMNLT 368 (372)
Q Consensus 357 ----~~~~~~~~~~~~ 368 (372)
.+++..++.++.
T Consensus 867 a~~g~~~~~~~~~a~~ 882 (896)
T PRK13012 867 ADDGEVERTVVAEAIE 882 (896)
T ss_pred HhcCCCCHHHHHHHHH
Confidence 344444444443
No 29
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.2e-38 Score=340.92 Aligned_cols=322 Identities=22% Similarity=0.303 Sum_probs=260.6
Q ss_pred hhhhhhhhcccCCCccccccccccccCCC--ccCCC-CcccHHHHHHHHHHHHHhcCCCEEEEeCCCCC-----------
Q 017410 4 GLRRFVGSLSRRNLSTACANKQLIQQHDG--GVGSG-KSLNLYSAINQALHIALETDPRAYVFGEDVGF----------- 69 (372)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~----------- 69 (372)
-|++.+..+++.|.+.-.||+..+....+ ....+ +.++|.+|...++.+++++|++|+++|+|++.
T Consensus 547 ~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~ 626 (929)
T TIGR00239 547 RLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLH 626 (929)
T ss_pred HHHHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCccccccccccc
Confidence 36778889999999999999999987766 33343 44899999999999999999999999999974
Q ss_pred ----CCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeE--EEecccccHH---HHHHHHHHH-HHhhhhh
Q 017410 70 ----GGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAI--AEIQFADYIF---PAFDQIVNE-AAKFRYR 139 (372)
Q Consensus 70 ----gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi--~~i~~~~F~~---ra~dqi~~~-~a~~~~~ 139 (372)
|+.|+.+++|.++||+.|++|++|+|.+++|++.|+|+.|.+|+ ++++|++|+. .++|||.++ .++++|+
T Consensus 627 dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~ 706 (929)
T TIGR00239 627 DQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQM 706 (929)
T ss_pred ccccCceeecccchhhhcCCeeEEcCCccHHHHHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCc
Confidence 34458899999999999999999999999999999999998774 9999999984 779999988 5766654
Q ss_pred cCCCcccccEEEEeCCCCCCCCCCCCChhHHHHH--cCCCCcEEEeeCCHHHHHHHHH-HhHhC-CCcEEEEeccccccc
Q 017410 140 SGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFF--CHVPGLKVVIPRSPRQAKGLLL-SCIRD-PNPVVFFEPKWLYRL 215 (372)
Q Consensus 140 ~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l--~~iP~l~V~~Psd~~e~~~~l~-~a~~~-~~Pv~ir~p~~l~r~ 215 (372)
+ +||++.+.|..|.++.|||+..+++| ++.|||+|+.|++|.|++.+|+ ++++. ++|+++++||.|+|.
T Consensus 707 s-------glv~~~p~G~~g~g~~hsS~~~E~~lql~~~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~ 779 (929)
T TIGR00239 707 S-------GLVMLLPHGYEGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRH 779 (929)
T ss_pred c-------CeEEEecCcCCCCCchhhccCHHHHHHHhCCCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcC
Confidence 3 78999998877778888889999999 8999999999999999999999 79997 999999999999986
Q ss_pred cc-----ccCCCCCccccCCceE-----EeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHH
Q 017410 216 SV-----EEVPEDDYMLPLSEAE-----VIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEA 285 (372)
Q Consensus 216 ~~-----~~v~~~~~~~~~Gk~~-----v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~ 285 (372)
+. ++++++.|..+++... +.+++.+.+|+|+| ++..++++ ++++++|+++.||++++|+|||.+.|.+
T Consensus 780 ~~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~vv~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~ 857 (929)
T TIGR00239 780 PLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLVLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKE 857 (929)
T ss_pred ccccCccccCCCCCcccccccccccccccCccCCcEEEEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHH
Confidence 53 3566666666665421 23345566677777 66666666 6677789999999999999999999999
Q ss_pred HHhcCC---eEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc
Q 017410 286 SVRKTG---RLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP 336 (372)
Q Consensus 286 ~~~~~~---~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~ 336 (372)
+++|+. ++|++.|...+.|-...|..+|.+.-. ...++.-+|.+....|
T Consensus 858 sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~~l~--~~~~l~y~gR~~~asp 909 (929)
T TIGR00239 858 VLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLREVIP--EGVSVRYAGRPASASP 909 (929)
T ss_pred HHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHHHhc--cCCceEEeCCCCCCCC
Confidence 999995 788886555666666888888875320 0134555554444333
No 30
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=2e-38 Score=340.44 Aligned_cols=320 Identities=21% Similarity=0.254 Sum_probs=265.2
Q ss_pred hhhhhhhcccCCCccccccccccccCCCcc--CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC--------------
Q 017410 5 LRRFVGSLSRRNLSTACANKQLIQQHDGGV--GSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-------------- 68 (372)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-------------- 68 (372)
|+.-+..+.+.|.+.-.||+.+|....+.- ..++.++|.+|...++.+++++|++|+++|+|++
T Consensus 547 l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq 626 (924)
T PRK09404 547 LKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQ 626 (924)
T ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhcccc
Confidence 666777889999999999999998876665 5556689999999999999999999999999997
Q ss_pred -CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCee--EEEecccccHH---HHHHHHHHHH-HhhhhhcC
Q 017410 69 -FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRA--IAEIQFADYIF---PAFDQIVNEA-AKFRYRSG 141 (372)
Q Consensus 69 -~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~p--i~~i~~~~F~~---ra~dqi~~~~-a~~~~~~~ 141 (372)
.|+.|+.+++|.++||++|++|++|+|.+++|++.|+|+.|.+| +|+++|++|+. .++||+.+++ ++++++
T Consensus 627 ~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~-- 704 (924)
T PRK09404 627 KTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRL-- 704 (924)
T ss_pred CCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCc--
Confidence 56788889999999999999999999999999999999999975 99999999974 7799999886 665544
Q ss_pred CCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCC--CCcEEEeeCCHHHHHHHHHHhH-hC-CCcEEEEeccccccccc
Q 017410 142 NQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHV--PGLKVVIPRSPRQAKGLLLSCI-RD-PNPVVFFEPKWLYRLSV 217 (372)
Q Consensus 142 ~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~i--P~l~V~~Psd~~e~~~~l~~a~-~~-~~Pv~ir~p~~l~r~~~ 217 (372)
. +||++.|.|..|.++.|||+..+++|... |||+|+.|++|.|++.+|+.++ +. ++|+++++||.|+|.+.
T Consensus 705 ----s-glv~~~p~G~~g~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~ 779 (924)
T PRK09404 705 ----S-GLVMLLPHGYEGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPL 779 (924)
T ss_pred ----c-CeEEEecCcCCCCChhhhccCHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCC
Confidence 3 78999998877777888888999999554 7999999999999999999854 66 69999999999998642
Q ss_pred -----ccCCCCCccccCCceEEeeeCCcE--EEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC
Q 017410 218 -----EEVPEDDYMLPLSEAEVIREGSDI--TLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (372)
Q Consensus 218 -----~~v~~~~~~~~~Gk~~v~~~g~di--~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (372)
++++.+.+..++++.. .+++.|+ +|||||.++..+++|++.+. ..++.||++++|.|||.+.|.++++|+
T Consensus 780 ~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~--~~~v~ii~le~L~P~~~~~i~~~v~k~ 856 (924)
T PRK09404 780 AVSSLEELAEGSFQPVIGDID-ELDPKKVKRVVLCSGKVYYDLLEARRKRG--IDDVAIVRIEQLYPFPHEELAAELAKY 856 (924)
T ss_pred CCCCHHHcCCCCceeeccccc-ccCccceeEEEEEcCHHHHHHHHHHHhCC--CCCEEEEEeeeeCCCCHHHHHHHHHhc
Confidence 2333344555566554 5667788 79999999999999988553 349999999999999999999999997
Q ss_pred ---CeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc
Q 017410 291 ---GRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP 336 (372)
Q Consensus 291 ---~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~ 336 (372)
+++|+++|...+.|.+..|..+|.+.-. ...++.-+|.+....|
T Consensus 857 ~~~~~~v~vqEe~~n~G~~~~~~~~~~~~~~--~~~~~~y~gR~~~asp 903 (924)
T PRK09404 857 PNAKEVVWCQEEPKNQGAWYFIQHHLEEVLP--EGQKLRYAGRPASASP 903 (924)
T ss_pred CCCCeEEEEeeCCCCCCcHHHHHHHHHHHhc--cCCeeEEECCCCcCCC
Confidence 4899998777899999999988875421 0235655654444433
No 31
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=9.1e-36 Score=261.99 Aligned_cols=153 Identities=25% Similarity=0.384 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHH
Q 017410 44 SAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIF 123 (372)
Q Consensus 44 ~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ 123 (372)
++++++|.+++++||+++++++|++.++ .+++|.++| |+||+|+||+|++|+++|+|+|+.|++||+++ |++|++
T Consensus 1 ~~~~~~l~~~~~~~~~~v~~~~Dl~~~~---~~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~-~~~f~~ 75 (156)
T cd07033 1 KAFGEALLELAKKDPRIVALSADLGGST---GLDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVST-FSFFLQ 75 (156)
T ss_pred ChHHHHHHHHHhhCCCEEEEECCCCCCC---CcHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEEE-CHHHHH
Confidence 3789999999999999999999997322 488999999 99999999999999999999999999999995 788899
Q ss_pred HHHHHHHHHHHhhhhhcCCCcccccEEEEe-CCCCC-CCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC
Q 017410 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAV-GHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD 200 (372)
Q Consensus 124 ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~-~~G~~-g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~ 200 (372)
|++|||++++++++ + |++++. ++|.. +.+|++|+ ++|+++++++||++|++|+|+.|++.+++++++.
T Consensus 76 ra~dqi~~~~a~~~--------~-pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~ 146 (156)
T cd07033 76 RAYDQIRHDVALQN--------L-PVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY 146 (156)
T ss_pred HHHHHHHHHHhccC--------C-CeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC
Confidence 99999999999765 5 888885 45543 46788884 6899999999999999999999999999999999
Q ss_pred CCcEEEEecc
Q 017410 201 PNPVVFFEPK 210 (372)
Q Consensus 201 ~~Pv~ir~p~ 210 (372)
++|+|||++|
T Consensus 147 ~~P~~irl~~ 156 (156)
T cd07033 147 DGPVYIRLPR 156 (156)
T ss_pred CCCEEEEeeC
Confidence 9999997764
No 32
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=1.5e-35 Score=265.94 Aligned_cols=168 Identities=43% Similarity=0.644 Sum_probs=133.4
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcC-CeeEEEe
Q 017410 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEI 116 (372)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G-~~pi~~i 116 (372)
++++||+|++++|.+++++||+++++++|++ ++++.....+...++|+||+|+||+|++|+++|+|||+.| ++|.+++
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~-~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~ 79 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLG-GGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVES 79 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTH-HHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcC-cchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEe
Confidence 4789999999999999999999999999998 3344334455556667799999999999999999999999 3444444
Q ss_pred cccccHH----HHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCC-CCCCC-CCCChhHHHHHcCCCCcEEEeeCCHHHH
Q 017410 117 QFADYIF----PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-VGHGG-HYHSQSPEAFFCHVPGLKVVIPRSPRQA 190 (372)
Q Consensus 117 ~~~~F~~----ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~-~g~~G-~~Hs~~d~a~l~~iP~l~V~~Psd~~e~ 190 (372)
+|++|+. |++||+++++++++ +++ + +..+.|. .+.+| +||+++|+++|+++|||+|++|+|+.|+
T Consensus 80 ~f~~F~~~~q~r~~~~~~~~~~~~~------~~v-~--v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~ 150 (178)
T PF02779_consen 80 TFADFLTPAQIRAFDQIRNDMAYGQ------LPV-P--VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEA 150 (178)
T ss_dssp EEGGGGGGGHHHHHHHHHHHHHHHT------S-E-E--EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHH
T ss_pred eccccccccchhhhhhhhhhhhccc------cee-c--ceeecCcccccccccccccccccccccccccccccCCCHHHH
Confidence 8999988 99999999888765 234 4 3344333 34444 5556899999999999999999999999
Q ss_pred HHHHHHhHh--CCCcEEEEeccccccc
Q 017410 191 KGLLLSCIR--DPNPVVFFEPKWLYRL 215 (372)
Q Consensus 191 ~~~l~~a~~--~~~Pv~ir~p~~l~r~ 215 (372)
+.+++++++ .++|+|||++|.+++.
T Consensus 151 ~~~l~~a~~~~~~~P~~ir~~r~~~~~ 177 (178)
T PF02779_consen 151 KGLLRAAIRRESDGPVYIREPRGLYPH 177 (178)
T ss_dssp HHHHHHHHHSSSSSEEEEEEESSEES-
T ss_pred HHHHHHHHHhCCCCeEEEEeeHHhCCC
Confidence 999999999 6899999999987754
No 33
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-34 Score=291.85 Aligned_cols=295 Identities=16% Similarity=0.183 Sum_probs=239.3
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC--ccccchhHH-HHhCCCceEecchhHHHHHHHHHHHHhcC-Cee
Q 017410 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGG--VFRCTTGLA-DRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRA 112 (372)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg--~~~~~~~~~-~~~~p~r~i~~GIaE~~~vg~A~GlA~~G-~~p 112 (372)
+..+.+|++.+++|..+....|+++..++|+..+. ..+....|. +.| .+|+|..||+|.+|.+++.|||+.| ++|
T Consensus 351 ~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGialhGg~~p 429 (663)
T COG0021 351 GKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIALHGGFIP 429 (663)
T ss_pred ccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCC-CCCeeEEeeHHHHHHHHHHhHHHhcCcee
Confidence 55589999999999999999999999999998221 111223343 677 8999999999999999999999995 799
Q ss_pred EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHH
Q 017410 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQ 189 (372)
Q Consensus 113 i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e 189 (372)
|.. +|..|+.++..+||.. |+++ + |++++ +|.+. .|+||+||+ .+.++.||.|||+.|+.|+|+.|
T Consensus 430 ygg-TFlvFsdY~r~AiRla-ALm~--------l-~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~E 498 (663)
T COG0021 430 YGG-TFLVFSDYARPAVRLA-ALMG--------L-PVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANE 498 (663)
T ss_pred ecc-eehhhHhhhhHHHHHH-HhcC--------C-CeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHH
Confidence 999 7999999999999974 4444 5 87877 77664 699999998 68999999999999999999999
Q ss_pred HHHHHHHhHhC-CCcEEEEecccccccccccCCCCCccccCCceEEeee----CCcEEEEEeChhHHHHHHHHHHHHhcC
Q 017410 190 AKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIRE----GSDITLVGWGAQLSIMEQACLDAEKEG 264 (372)
Q Consensus 190 ~~~~l~~a~~~-~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~----g~di~ii~~G~~~~~a~~Aa~~L~~~G 264 (372)
...+++.|++. ++|+++ .+.|++.|.++.++......+++++++ +.|++||++||.+..|++|++.|+++|
T Consensus 499 t~~aw~~Al~~~~gPt~L----iltRQnlp~l~~t~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~ 574 (663)
T COG0021 499 TAAAWKYALERKDGPTAL----ILTRQNLPVLERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEG 574 (663)
T ss_pred HHHHHHHHHhcCCCCeEE----EEecCCCCccCCCccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcC
Confidence 99999999995 999999 888888888776654444556777776 589999999999999999999999899
Q ss_pred CceeEEeecccCCCCHHH--HHHHHhcC--CeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcccccc
Q 017410 265 ISCELIDLKTLIPWDKET--VEASVRKT--GRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFE 340 (372)
Q Consensus 265 i~v~vi~~~~i~P~d~~~--l~~~~~~~--~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~lle 340 (372)
++++||+++|...|+.+. .++.+-.. .+.|.+|-.. ..||..++. ..+ ...-+.++| ...|.+.++|
T Consensus 575 ~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~-~~~W~ky~g----~~g---~~ig~~~FG-~Sap~~~l~~ 645 (663)
T COG0021 575 IKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGS-ALGWYKYVG----LDG---AVIGMDSFG-ASAPGDELFK 645 (663)
T ss_pred CceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEecc-ccchhhhcC----CCC---cEEeeccCc-CCCCHHHHHH
Confidence 999999999999998753 33444333 2357788885 688988763 111 112234553 4557778999
Q ss_pred cCCCCcHHHHHHHHhC
Q 017410 341 PFYMPTKNKASCLESF 356 (372)
Q Consensus 341 ~~~l~~~~~~~~i~~~ 356 (372)
+|||+.+++++++++.
T Consensus 646 ~fGft~e~vv~~~~~~ 661 (663)
T COG0021 646 EFGFTVENVVAKAKSL 661 (663)
T ss_pred HhCCCHHHHHHHHHHh
Confidence 9999999999998763
No 34
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97 E-value=1e-29 Score=225.85 Aligned_cols=155 Identities=39% Similarity=0.519 Sum_probs=129.3
Q ss_pred cHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCccccchhHHHHhCCC-------ceEecchhHHHHHHHHHHHHhcCCee
Q 017410 41 NLYSAINQALHIALETDP-RAYVFGEDVGFGGVFRCTTGLADRFGKS-------RVFNTPLCEQGIVGFAIGLAAMGNRA 112 (372)
Q Consensus 41 ~~~~a~~~~L~~l~~~d~-~vv~i~aD~~~gg~~~~~~~~~~~~~p~-------r~i~~GIaE~~~vg~A~GlA~~G~~p 112 (372)
+++++++++|.+++++|+ +++++++|++.+ .. +. ..+.| |+ ||+|+||+|++|+++|+|+|++|++|
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~--~~-~~-~~~~~-~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~p 75 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGS--TG-LD-RGGVF-PDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRP 75 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcC--cC-CC-cCCcc-CCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCc
Confidence 478999999999999955 999999999732 11 22 24555 55 49999999999999999999999999
Q ss_pred EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCC-CCCCCCC-CCChhHHHHHcCCCCcEEEeeCCHHHH
Q 017410 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG-AVGHGGH-YHSQSPEAFFCHVPGLKVVIPRSPRQA 190 (372)
Q Consensus 113 i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G-~~g~~G~-~Hs~~d~a~l~~iP~l~V~~Psd~~e~ 190 (372)
|++ +|+.|+.|++||++++++++ ++ ++++...+| ..|.+|+ ||+++|++++++|||++|++|+|+.|+
T Consensus 76 i~~-~~~~f~~~a~~~~~~~~~~~--------~~-~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~ 145 (168)
T smart00861 76 VVA-IFFTFFDRAKDQIRSDGAMG--------RV-PVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEA 145 (168)
T ss_pred EEE-eeHHHHHHHHHHHHHhCccc--------CC-CEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHH
Confidence 999 59999899999999887742 25 887776554 4566566 556899999999999999999999999
Q ss_pred HHHHHHhHhC-CCcEEEEecc
Q 017410 191 KGLLLSCIRD-PNPVVFFEPK 210 (372)
Q Consensus 191 ~~~l~~a~~~-~~Pv~ir~p~ 210 (372)
+.+++++++. ++|+|||.++
T Consensus 146 ~~~l~~a~~~~~~p~~i~~~~ 166 (168)
T smart00861 146 KGLLRAAIRRDDGPPVIRLER 166 (168)
T ss_pred HHHHHHHHhCCCCCEEEEecC
Confidence 9999999976 6899996654
No 35
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.90 E-value=1.5e-21 Score=194.23 Aligned_cols=241 Identities=15% Similarity=0.189 Sum_probs=176.8
Q ss_pred CceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCCCCCCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAVGHGGH 163 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~g~~G~ 163 (372)
..|+++- +|.+++++|.|+|.+|.|.++. |.+..+....+++-...+ . .+ |+|++ .+.|...+..+
T Consensus 49 ~~~vq~E-~E~aA~~~a~GAs~aG~Ra~Ta-TSg~Gl~lm~E~~~~a~~-~--------e~-P~Viv~~~R~gp~tg~p~ 116 (376)
T PRK08659 49 GVFIQME-DEIASMAAVIGASWAGAKAMTA-TSGPGFSLMQENIGYAAM-T--------ET-PCVIVNVQRGGPSTGQPT 116 (376)
T ss_pred CEEEEeC-chHHHHHHHHhHHhhCCCeEee-cCCCcHHHHHHHHHHHHH-c--------CC-CEEEEEeecCCCCCCCCC
Confidence 5688877 9999999999999999999999 688888888898854333 1 25 87776 57777655555
Q ss_pred CCChhHHHHHc-----CCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecccccccccc-------cCC------
Q 017410 164 YHSQSPEAFFC-----HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-------EVP------ 221 (372)
Q Consensus 164 ~Hs~~d~a~l~-----~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~~~~-------~v~------ 221 (372)
.++|+|+-..+ ..| +.|+.|+|++|++++...|++ ++-||+++.+.++.....+ .+.
T Consensus 117 ~~~q~D~~~~~~~~hgd~~-~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~ 195 (376)
T PRK08659 117 KPAQGDMMQARWGTHGDHP-IIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKL 195 (376)
T ss_pred CcCcHHHHHHhcccCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhcccccccc
Confidence 56677775444 343 569999999999999999997 4789999998876533211 000
Q ss_pred -C------CCcc-----cc----CC--c------------------------------------------eEEee-eCCc
Q 017410 222 -E------DDYM-----LP----LS--E------------------------------------------AEVIR-EGSD 240 (372)
Q Consensus 222 -~------~~~~-----~~----~G--k------------------------------------------~~v~~-~g~d 240 (372)
. .+|. ++ .| . .+... +++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad 275 (376)
T PRK08659 196 PKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAE 275 (376)
T ss_pred CCCCccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCC
Confidence 0 0010 00 01 0 01111 4689
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhcccc
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLR 320 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~ 320 (372)
++||+||+++..+++|++.|+++|++++++++++++|||.+.|.+.++++++|+|||+| .|++..++...+....
T Consensus 276 ~~iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~--~g~l~~el~~~~~~~~--- 350 (376)
T PRK08659 276 VVVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN--LGQMSLEVERVVNGRA--- 350 (376)
T ss_pred EEEEEeCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHhCCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999 4778777776553210
Q ss_pred CCCcEEEEeccCCCcccccccCCCCcHHHHHHHHh
Q 017410 321 LEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 321 l~~~v~~ig~~~~~~~~lle~~~l~~~~~~~~i~~ 355 (372)
....+.++||.+. +++++.+++++
T Consensus 351 ~~~~i~~~~G~~~-----------~~~ei~~~~~~ 374 (376)
T PRK08659 351 KVEGINKIGGELI-----------TPEEILEKIKE 374 (376)
T ss_pred CeeEEeccCCCcC-----------CHHHHHHHHHh
Confidence 0123556666664 44666666654
No 36
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.89 E-value=4.3e-21 Score=189.44 Aligned_cols=217 Identities=19% Similarity=0.182 Sum_probs=162.7
Q ss_pred HHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCC
Q 017410 81 DRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAV 158 (372)
Q Consensus 81 ~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~ 158 (372)
+++ ...|++ .-+|.+++++|.|+|.+|.|.++. |.+.++..+++.|-. ++.. .+ |++++ .+.|+.
T Consensus 45 ~~~-~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~ta-TSg~Gl~lm~E~l~~-a~~~--------e~-P~v~v~v~R~~p~ 111 (352)
T PRK07119 45 PEV-GGVFVQ-AESEVAAINMVYGAAATGKRVMTS-SSSPGISLKQEGISY-LAGA--------EL-PCVIVNIMRGGPG 111 (352)
T ss_pred HHh-CCEEEe-eCcHHHHHHHHHHHHhhCCCEEee-cCcchHHHHHHHHHH-HHHc--------cC-CEEEEEeccCCCC
Confidence 345 456788 889999999999999999999999 688889999998753 3322 24 66655 555554
Q ss_pred CCCCCCCChhHHHHHcC-----CCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeccccccccccc-CC-------
Q 017410 159 GHGGHYHSQSPEAFFCH-----VPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVEE-VP------- 221 (372)
Q Consensus 159 g~~G~~Hs~~d~a~l~~-----iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~~~~~-v~------- 221 (372)
.+. ++..|.|.-+... --++.|+.|+|++|++++..+|++ .+-||+++.+.++.....+. ++
T Consensus 112 ~g~-t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~ 190 (352)
T PRK07119 112 LGN-IQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPL 190 (352)
T ss_pred CCC-CcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhccc
Confidence 332 3334667655432 335899999999999999999997 47899999998775432110 11
Q ss_pred -CCCcccc-CC--------------------------ce----------EEe-eeCCcEEEEEeChhHHHHHHHHHHHHh
Q 017410 222 -EDDYMLP-LS--------------------------EA----------EVI-REGSDITLVGWGAQLSIMEQACLDAEK 262 (372)
Q Consensus 222 -~~~~~~~-~G--------------------------k~----------~v~-~~g~di~ii~~G~~~~~a~~Aa~~L~~ 262 (372)
++.+.++ .+ ++ ... .++.|++||+||+++..+++|++.|++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~ 270 (352)
T PRK07119 191 PPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMARE 270 (352)
T ss_pred CCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHH
Confidence 0011000 00 00 111 146899999999999999999999999
Q ss_pred cCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHH
Q 017410 263 EGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (372)
Q Consensus 263 ~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l 313 (372)
+|+++++++++++||||.+.|.++++++++|+|+|++ .|.+..+|...+
T Consensus 271 ~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n--~g~l~~ei~~~~ 319 (352)
T PRK07119 271 EGIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS--MGQMVEDVRLAV 319 (352)
T ss_pred cCCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC--ccHHHHHHHHHh
Confidence 9999999999999999999999999999999999999 488888887554
No 37
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.89 E-value=2.9e-21 Score=191.72 Aligned_cols=240 Identities=15% Similarity=0.113 Sum_probs=178.8
Q ss_pred CceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCCCCCCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAVGHGGH 163 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~g~~G~ 163 (372)
..|+.+= +|.+++++|.|+|.+|.|.++. |.++.+....+++-...+ ..+ |+|++ .++|.+++..+
T Consensus 48 ~~~vq~E-~E~aA~~~a~GAs~aG~Ra~ta-TSg~G~~lm~E~~~~a~~---------~e~-P~V~~~~~R~GpstG~p~ 115 (375)
T PRK09627 48 GTFIQME-DEISGISVALGASMSGVKSMTA-SSGPGISLKAEQIGLGFI---------AEI-PLVIVNVMRGGPSTGLPT 115 (375)
T ss_pred CEEEEcC-CHHHHHHHHHHHHhhCCCEEee-cCCchHHHHhhHHHHHHh---------ccC-CEEEEEeccCCCcCCCCC
Confidence 3455554 9999999999999999999999 688888888888763322 136 88886 56788765565
Q ss_pred CCChhHHHHHc-----CCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecccccccccc-------cCC------
Q 017410 164 YHSQSPEAFFC-----HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-------EVP------ 221 (372)
Q Consensus 164 ~Hs~~d~a~l~-----~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~~~~-------~v~------ 221 (372)
...|.|....+ ..|.+ |++|+|++|++++..+|++ ++-||+++.+.++.....+ .++
T Consensus 116 ~~~q~D~~~~~~~~hgd~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~ 194 (375)
T PRK09627 116 RVAQGDVNQAKNPTHGDFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINR 194 (375)
T ss_pred ccchHHHHHHhcCCCCCcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhcccccccc
Confidence 55677876555 56665 9999999999999999997 5889999998876533211 010
Q ss_pred ---C---CCc-cccC-------------------------------------------------------CceEEee-eC
Q 017410 222 ---E---DDY-MLPL-------------------------------------------------------SEAEVIR-EG 238 (372)
Q Consensus 222 ---~---~~~-~~~~-------------------------------------------------------Gk~~v~~-~g 238 (372)
. .+| .+.+ ..+.... ++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~d 274 (375)
T PRK09627 195 KEFDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDD 274 (375)
T ss_pred ccccCCcccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCC
Confidence 0 000 0000 0011111 35
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhcc
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCF 318 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~ 318 (372)
+|++||+||++...+++|++.|+++|++++++++++++|||.+.|.+.+++.++|+|+|++. |+|..+|...+....
T Consensus 275 Ad~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~--Gql~~~v~~~~~~~~- 351 (375)
T PRK09627 275 AEILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM--GQYLEEIERVMQRDD- 351 (375)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh--HHHHHHHHHHhCCCC-
Confidence 78999999999999999999999999999999999999999999999999999999999996 999999987663221
Q ss_pred ccCCCcEEEEeccCCCcccccccCCCCcHHHHHHHHh
Q 017410 319 LRLEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 319 ~~l~~~v~~ig~~~~~~~~lle~~~l~~~~~~~~i~~ 355 (372)
...+.+++|.+.+ ++++.+++++
T Consensus 352 ---~~~i~~~~G~~~~-----------~~~i~~~i~~ 374 (375)
T PRK09627 352 ---FHFLGKANGRPIS-----------PSEIIAKVKE 374 (375)
T ss_pred ---ceEEeeeCCCcCC-----------HHHHHHHHHh
Confidence 2356677777744 4566665553
No 38
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.89 E-value=3.9e-21 Score=202.04 Aligned_cols=259 Identities=17% Similarity=0.163 Sum_probs=190.7
Q ss_pred chhHHHHhCC--CceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEe
Q 017410 76 TTGLADRFGK--SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (372)
Q Consensus 76 ~~~~~~~~~p--~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~ 153 (372)
.+.+++.. + +-++....+|.+++++|.|.|.+|.|.++. |.+..+..+.|++.. +++.. .+. |+|++.
T Consensus 35 ~e~l~~~~-~~~~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~-ts~~Gl~~~~e~l~~-~~~~g------~~~-~iV~~~ 104 (595)
T TIGR03336 35 TDTLAKVA-KRAGVYFEWSVNEKVAVEVAAGAAWSGLRAFCT-MKHVGLNVAADPLMT-LAYTG------VKG-GLVVVV 104 (595)
T ss_pred HHHHHHhh-hhccEEEEECcCHHHHHHHHHHHHhcCcceEEE-ccCCchhhhHHHhhh-hhhhc------CcC-ceEEEE
Confidence 44454433 3 346778889999999999999999999999 689999999999875 44322 245 888775
Q ss_pred CCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecccccccccc----cCCC---
Q 017410 154 PYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE----EVPE--- 222 (372)
Q Consensus 154 ~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~~~~----~v~~--- 222 (372)
..+.. ...++..|.|.-+.+. .++.|+.|+|++|++++..+|++ ++-||+++.+.++.....+ +.+.
T Consensus 105 ~~~~g-p~~~~~~q~d~~~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~ 182 (595)
T TIGR03336 105 ADDPS-MHSSQNEQDTRHYAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEV 182 (595)
T ss_pred ccCCC-CccchhhHhHHHHHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCccccc
Confidence 43322 2233334556554444 57889999999999999999997 5899999999877544321 0000
Q ss_pred -CCccccC----------------------------Cc--eE-EeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEE
Q 017410 223 -DDYMLPL----------------------------SE--AE-VIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (372)
Q Consensus 223 -~~~~~~~----------------------------Gk--~~-v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi 270 (372)
.++..+. .. +. +..+++|++||+||++++.+++|++.| |++++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~ 259 (595)
T TIGR03336 183 VKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVL 259 (595)
T ss_pred ccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEE
Confidence 0000000 00 11 122468899999999999999988765 9999999
Q ss_pred eecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcccccccCCCCcHHHH
Q 017410 271 DLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKA 350 (372)
Q Consensus 271 ~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~lle~~~l~~~~~~ 350 (372)
+++++||||++.|.+.++++++|+|+|||. +++++.+...+.+.+ .++.++|.+|.+.+ +..+|+.+.+.
T Consensus 260 ~~~~i~Pld~~~i~~~~~~~~~vivvEe~~--~~~~~~~~~~~~~~~-----~~v~~~G~~d~fi~---~~~~Ld~~~i~ 329 (595)
T TIGR03336 260 KIGFTYPVPEGLVEEFLSGVEEVLVVEELE--PVVEEQVKALAGTAG-----LNIKVHGKEDGFLP---REGELNPDIVV 329 (595)
T ss_pred EeCCCCCCCHHHHHHHHhcCCeEEEEeCCc--cHHHHHHHHHHHhcC-----CCeEEecccCCccC---cccCcCHHHHH
Confidence 999999999999999999999999999996 556665555544432 37889998887766 68899999999
Q ss_pred HHHHhCCCC
Q 017410 351 SCLESFKVP 359 (372)
Q Consensus 351 ~~i~~~~~~ 359 (372)
++++++|+.
T Consensus 330 ~~i~~~~~~ 338 (595)
T TIGR03336 330 NALAKFGLA 338 (595)
T ss_pred HHHHHhCCC
Confidence 999888854
No 39
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.88 E-value=3.4e-24 Score=181.19 Aligned_cols=120 Identities=36% Similarity=0.600 Sum_probs=109.3
Q ss_pred CceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHH
Q 017410 230 SEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 230 Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i 309 (372)
||+.++++|+|++|||+|++++.|++|++.|+++|++++||++++++|||++.|.++++++++++|+|||+..||+|+.|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCcEEEEeccCCCcc----cccccCCCCcHHH
Q 017410 310 SASILERCFLRLEAPVARVCGLDTPFP----LVFEPFYMPTKNK 349 (372)
Q Consensus 310 ~~~l~~~~~~~l~~~v~~ig~~~~~~~----~lle~~~l~~~~~ 349 (372)
++.+.++++..+..++.++|.+|.|++ ++++.+||++++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHGRAELLEAFGLDAESI 124 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSSHHHHHHHTTHSHHHH
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCcHHHHHHHCcCCCCcC
Confidence 999999875333478999999999887 5788888887764
No 40
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.85 E-value=1.2e-19 Score=189.24 Aligned_cols=238 Identities=19% Similarity=0.229 Sum_probs=177.2
Q ss_pred CceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCCCCCCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAVGHGGH 163 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~g~~G~ 163 (372)
+-.+...-+|.+++++|.|+|.+|.|.++. |.+..+..+.|.+-. ++.. .+ |+|++ ++.|.+.+..+
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG~Ra~ta-TSg~Gl~lm~E~l~~-a~~~--------~~-P~Vi~~~~R~gpstg~~t 305 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAGARAMTA-TSGPGFALMTEALGL-AGMT--------ET-PLVIVDVQRGGPSTGLPT 305 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcCCceeec-CCCCChhHhHHHHhH-HHhc--------cC-CEEEEEcccCCCCCCCCC
Confidence 356667779999999999999999999999 688888888898842 2222 35 88876 57777655555
Q ss_pred CCChhHHHHHcCC----CCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecccccccccc-------cCC-------
Q 017410 164 YHSQSPEAFFCHV----PGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-------EVP------- 221 (372)
Q Consensus 164 ~Hs~~d~a~l~~i----P~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~~~~-------~v~------- 221 (372)
++.|.|.-+.+.- -++.|++|+|++|++++..+|++ .+-||+++.+..+.....+ .+.
T Consensus 306 ~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~ 385 (562)
T TIGR03710 306 KTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKV 385 (562)
T ss_pred CccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhccccccccc
Confidence 5668777555421 24789999999999999999987 5889999998876432210 010
Q ss_pred -C--CCcc-----------c-cCCc---------------------------------------------eEEee-eCCc
Q 017410 222 -E--DDYM-----------L-PLSE---------------------------------------------AEVIR-EGSD 240 (372)
Q Consensus 222 -~--~~~~-----------~-~~Gk---------------------------------------------~~v~~-~g~d 240 (372)
. ..|. . ..|. .+... ++++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~ 465 (562)
T TIGR03710 386 LEPEEEYKRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDAD 465 (562)
T ss_pred ccCCCCCCCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCC
Confidence 0 0000 0 0110 01111 3578
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhcccc
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLR 320 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~ 320 (372)
++||+||++...+++|++.|+++|++++++++++++|||.+.|.+.+++.++|+|+|++. .|+|..+|...+.. .
T Consensus 466 ~~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~-~Gql~~~v~~~~~~-~--- 540 (562)
T TIGR03710 466 VLVIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNA-TGQLAKLLRAETGI-V--- 540 (562)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccCh-hhhHHHHHHHHhCC-C---
Confidence 999999999999999999999999999999999999999999999999999999999996 59999999876621 1
Q ss_pred CCCcEEEEeccCCCccccc
Q 017410 321 LEAPVARVCGLDTPFPLVF 339 (372)
Q Consensus 321 l~~~v~~ig~~~~~~~~ll 339 (372)
....+.+++|.+.+.+++.
T Consensus 541 ~~~~i~~~~G~~~~~~ei~ 559 (562)
T TIGR03710 541 KVRSILKYDGRPFTPEEIV 559 (562)
T ss_pred CeeEEeeeCCCcCCHHHHH
Confidence 1345677888776654443
No 41
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.84 E-value=2e-19 Score=179.32 Aligned_cols=235 Identities=15% Similarity=0.135 Sum_probs=169.8
Q ss_pred cchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCCCCCCCCCChh
Q 017410 91 TPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAVGHGGHYHSQS 168 (372)
Q Consensus 91 ~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~g~~G~~Hs~~ 168 (372)
..-+|.+++++|.|+|.+|.|.++. |.+..+..+.|.|-. ++..+ + |+|+. .++|. +...++..|+
T Consensus 54 ~~E~E~aA~~~aiGAs~aGaRa~Ta-TSg~Gl~lm~E~l~~-aa~~~--------l-PiVi~~~~R~~p-~~~~~~~~q~ 121 (390)
T PRK08366 54 PVESEHSAMAACIGASAAGARAFTA-TSAQGLALMHEMLHW-AAGAR--------L-PIVMVDVNRAMA-PPWSVWDDQT 121 (390)
T ss_pred EeCCHHHHHHHHHHHHhhCCCeEee-eCcccHHHHhhHHHH-HHhcC--------C-CEEEEEeccCCC-CCCCCcchhh
Confidence 3459999999999999999999999 688999999999864 34332 5 88876 46776 3333334577
Q ss_pred HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeccc-ccccccc-----------cCCC--C-------
Q 017410 169 PEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW-LYRLSVE-----------EVPE--D------- 223 (372)
Q Consensus 169 d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~-l~r~~~~-----------~v~~--~------- 223 (372)
|+...+. .++.++.|+|++|++++...|++ .+-||+++.++. +.+.... .+++ .
T Consensus 122 D~~~~~d-~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~ 200 (390)
T PRK08366 122 DSLAQRD-TGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADF 200 (390)
T ss_pred HHHHHhh-cCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCC
Confidence 8765554 48899999999999999999997 489999998763 2211100 0000 0
Q ss_pred Cccc----------------c----------------------CCceEE--ee----eCCcEEEEEeChhHHHHHHHHHH
Q 017410 224 DYML----------------P----------------------LSEAEV--IR----EGSDITLVGWGAQLSIMEQACLD 259 (372)
Q Consensus 224 ~~~~----------------~----------------------~Gk~~v--~~----~g~di~ii~~G~~~~~a~~Aa~~ 259 (372)
+.+. . +|+.+. .. +++|++||+||++...+++|++.
T Consensus 201 ~~p~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~ 280 (390)
T PRK08366 201 DNPISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDL 280 (390)
T ss_pred CCCcccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHH
Confidence 0000 0 111100 11 46889999999999999999999
Q ss_pred HHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCc---HHHHHHHHHHHhccc-cCCCcEEEEeccCCCc
Q 017410 260 AEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGG---FGAEISASILERCFL-RLEAPVARVCGLDTPF 335 (372)
Q Consensus 260 L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GG---lg~~i~~~l~~~~~~-~l~~~v~~ig~~~~~~ 335 (372)
|+++|++++++++++++|||.+.|.+.+++.++|+|+|++...|+ +..++...+.+.... .....+.++||+|.++
T Consensus 281 lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~l~~ev~~~l~~~~~~~~~~~~i~g~gGr~~t~ 360 (390)
T PRK08366 281 LRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGILFTEAKGALYNTDARPIMKNYIVGLGGRDFTV 360 (390)
T ss_pred HHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccHHHHHHHHHHhccCCCCceeceEeCcCCccCCH
Confidence 999999999999999999999999999999999999999976577 444555554332110 0123567888888766
Q ss_pred ccc
Q 017410 336 PLV 338 (372)
Q Consensus 336 ~~l 338 (372)
.++
T Consensus 361 ~~i 363 (390)
T PRK08366 361 NDV 363 (390)
T ss_pred HHH
Confidence 544
No 42
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.83 E-value=1.6e-18 Score=174.30 Aligned_cols=241 Identities=15% Similarity=0.140 Sum_probs=172.4
Q ss_pred cCCCEEEEeCCCCCCCccccchhHHHHhCCC-----ceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHH
Q 017410 56 TDPRAYVFGEDVGFGGVFRCTTGLADRFGKS-----RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIV 130 (372)
Q Consensus 56 ~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~-----r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~ 130 (372)
.+.+++..=+=+.. ....+.+++.. ++ .|+.+= +|.+++++|.|+|.+|.|.++. |.+..+..+.|.|-
T Consensus 26 Ag~~~~a~YPITPs---TeI~e~la~~~-~~g~~~~~~vq~E-~E~~A~~~~~GAs~aGaRa~Ta-TS~~Gl~lm~E~l~ 99 (407)
T PRK09622 26 AQIDVVAAYPITPS---TPIVQNYGSFK-ANGYVDGEFVMVE-SEHAAMSACVGAAAAGGRVATA-TSSQGLALMVEVLY 99 (407)
T ss_pred hCCCEEEEECCCCc---cHHHHHHHHHh-hCCCcCcEEEeec-cHHHHHHHHHHHHhhCcCEEee-cCcchHHHHhhHHH
Confidence 45555544333331 12344455543 43 466644 9999999999999999999999 68899999999886
Q ss_pred HHHHhhhhhcCCCcccccEEEE--eCCCCCCCCCCCC-ChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC------C
Q 017410 131 NEAAKFRYRSGNQFNCGGLTVR--APYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD------P 201 (372)
Q Consensus 131 ~~~a~~~~~~~~~~~~~pvvi~--~~~G~~g~~G~~H-s~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~------~ 201 (372)
. ++..+ + |+|+. .++|.++ -+++ .+.|.-..+ -.++.+++|+|++|++++...|++. .
T Consensus 100 ~-aa~~~--------~-P~V~~~~~R~~~~~--~~i~~d~~D~~~~r-~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~ 166 (407)
T PRK09622 100 Q-ASGMR--------L-PIVLNLVNRALAAP--LNVNGDHSDMYLSR-DSGWISLCTCNPQEAYDFTLMAFKIAEDQKVR 166 (407)
T ss_pred H-HHHhh--------C-CEEEEEeccccCCC--cCCCchHHHHHHHh-cCCeEEEeCCCHHHHHHHHHHHHHHHHHhccC
Confidence 4 33332 5 87776 4555442 3344 356665444 4679999999999999999999973 6
Q ss_pred CcEEEEecccc-ccc--cccc-----C----CC-CCc--------c--cc------------------------------
Q 017410 202 NPVVFFEPKWL-YRL--SVEE-----V----PE-DDY--------M--LP------------------------------ 228 (372)
Q Consensus 202 ~Pv~ir~p~~l-~r~--~~~~-----v----~~-~~~--------~--~~------------------------------ 228 (372)
-||+++.+..+ .+. +++. + ++ ..+ + ..
T Consensus 167 ~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 246 (407)
T PRK09622 167 LPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVF 246 (407)
T ss_pred CCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHH
Confidence 89999999874 321 1100 0 00 000 0 00
Q ss_pred ------CC----ceEEe-eeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEc
Q 017410 229 ------LS----EAEVI-REGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISH 297 (372)
Q Consensus 229 ------~G----k~~v~-~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvE 297 (372)
.| .++.. .+++|++||++|+++..+++|++.|+++|+++++|++++++|||.+.|.+.++++++|+|+|
T Consensus 247 ~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE 326 (407)
T PRK09622 247 NDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILD 326 (407)
T ss_pred HHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEe
Confidence 00 00001 13678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHH
Q 017410 298 EAPVTGGFGAEISASILE 315 (372)
Q Consensus 298 e~~~~GGlg~~i~~~l~~ 315 (372)
++...||+|+.+.+.+..
T Consensus 327 ~~~~~Gg~G~l~~ev~~a 344 (407)
T PRK09622 327 RSSPAGAMGALFNEVTSA 344 (407)
T ss_pred CCCCCCCccHHHHHHHHH
Confidence 999999999866555443
No 43
>PRK05261 putative phosphoketolase; Provisional
Probab=99.81 E-value=4.1e-18 Score=180.56 Aligned_cols=256 Identities=14% Similarity=0.109 Sum_probs=185.3
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCccccchh-HH----------------HHhCCCceEecchhHHH
Q 017410 36 SGKSLNLYSAINQALHIALETDPR-AYVFGEDVGFGGVFRCTTG-LA----------------DRFGKSRVFNTPLCEQG 97 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~-vv~i~aD~~~gg~~~~~~~-~~----------------~~~~p~r~i~~GIaE~~ 97 (372)
.....++|. +++.|.++++.+|+ ++++++|.. .|.+ +.. |. ... ..|+++ +++|++
T Consensus 387 ~~~~~atr~-~g~~l~~v~~~np~~frvf~pDe~--~SNr-l~~~f~~t~r~~~~~~~~~d~~~~~-~Grvie-~LsEh~ 460 (785)
T PRK05261 387 AVMAEATRV-LGKYLRDVIKLNPDNFRIFGPDET--ASNR-LQAVFEVTDRQWMAEILPYDEHLAP-DGRVME-VLSEHL 460 (785)
T ss_pred ccccccHHH-HHHHHHHHHHhCCCceEEEcCCcc--hhhc-cHhHHhhhccccccccCCcccccCC-CCCeee-eecHHH
Confidence 445667887 99999999999999 888999976 3333 222 21 122 379999 999999
Q ss_pred HHHHHHHHHhcCCeeEEEecccccH---HHHHHHH----HHHHHhhhhhcCCCcccccEEEE-eCCC-CCCCCCCCCCh-
Q 017410 98 IVGFAIGLAAMGNRAIAEIQFADYI---FPAFDQI----VNEAAKFRYRSGNQFNCGGLTVR-APYG-AVGHGGHYHSQ- 167 (372)
Q Consensus 98 ~vg~A~GlA~~G~~pi~~i~~~~F~---~ra~dqi----~~~~a~~~~~~~~~~~~~pvvi~-~~~G-~~g~~G~~Hs~- 167 (372)
|.|++.|+++.|.++++. +|-.|+ ..++.|+ |.. ....|+. ++..+.++ ++.. ..+++|.|||.
T Consensus 461 ~~g~~~Gy~LtG~~~~~~-sYeaF~~ivd~m~~q~~kw~r~~-~~~~wr~----~~~sLn~l~Ts~~~~qghNG~THQ~P 534 (785)
T PRK05261 461 CEGWLEGYLLTGRHGFFS-SYEAFIHIVDSMFNQHAKWLKVA-REIPWRK----PIPSLNYLLTSHVWRQDHNGFSHQDP 534 (785)
T ss_pred HHHHHHHHHhcCCCccee-cHHHHHHHHHHHHHHHHHHHHHH-hhcccCC----CCcceeEEeecceeecCCCCCCCCCc
Confidence 999999999999999999 799997 7888888 543 2334443 23233344 4444 46899999974
Q ss_pred --h-HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEEEecccccccccccCCCCC---ccccCCceEEee--e-
Q 017410 168 --S-PEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDD---YMLPLSEAEVIR--E- 237 (372)
Q Consensus 168 --~-d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-~~Pv~ir~p~~l~r~~~~~v~~~~---~~~~~Gk~~v~~--~- 237 (372)
. .++-++. |++.|+.|+|.+|+..+++.|++. ++|.+| .+.|++.+.....+ ..+.-|.+ ++. +
T Consensus 535 g~ie~l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~I----vlsRQ~lp~~~~~~~a~~~~~kGay-i~~~a~~ 608 (785)
T PRK05261 535 GFIDHVANKKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVI----VAGKQPRPQWLSMDEARKHCTKGLG-IWDWASN 608 (785)
T ss_pred hHHHHHHhcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEE----EEeCCCCcccCChHHHHHhccCceE-EEEeccC
Confidence 2 4466677 999999999999999999999986 789999 55666655442222 23445544 443 1
Q ss_pred ----CCcEEEEEeChhHHH-HHHHHHHHHhc--CCceeEEeecccCCC------------CHHHHHHHHhcCCeEEEEcC
Q 017410 238 ----GSDITLVGWGAQLSI-MEQACLDAEKE--GISCELIDLKTLIPW------------DKETVEASVRKTGRLLISHE 298 (372)
Q Consensus 238 ----g~di~ii~~G~~~~~-a~~Aa~~L~~~--Gi~v~vi~~~~i~P~------------d~~~l~~~~~~~~~vivvEe 298 (372)
+.|++|+|+|+.+.. |++|++.|+++ |++++||++. .+| +.+.+.+.....+.||+.=-
T Consensus 609 ~~~~~pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~--dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~~h 686 (785)
T PRK05261 609 DDGEEPDVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVV--DLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAFH 686 (785)
T ss_pred CCCCCCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEec--hhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEEeC
Confidence 369999999999988 99999999999 9999999994 333 34556666656666665433
Q ss_pred CCCCCcHHHHHHHHHHHh
Q 017410 299 APVTGGFGAEISASILER 316 (372)
Q Consensus 299 ~~~~GGlg~~i~~~l~~~ 316 (372)
++ .+.|-..+...
T Consensus 687 gy-----p~~i~~l~~~r 699 (785)
T PRK05261 687 GY-----PWLIHRLTYRR 699 (785)
T ss_pred CC-----HHHHHHHhccC
Confidence 33 35555555444
No 44
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.79 E-value=2.9e-17 Score=164.24 Aligned_cols=229 Identities=15% Similarity=0.155 Sum_probs=165.6
Q ss_pred chhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEe--CCCCCCCCCCCCChhH
Q 017410 92 PLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA--PYGAVGHGGHYHSQSP 169 (372)
Q Consensus 92 GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~--~~G~~g~~G~~Hs~~d 169 (372)
.-+|.+++++|.|+|.+|.|.++. |.+..+..+.|.+-. ++..+ + |+|++. |+... ..+.+..|.|
T Consensus 56 ~EsE~aA~~~~~GAs~aGaRa~Ta-TS~~Gl~lm~E~l~~-aag~~--------l-P~V~vv~~R~~~~-p~~i~~d~~D 123 (394)
T PRK08367 56 VESEHSAISACVGASAAGVRTFTA-TASQGLALMHEVLFI-AAGMR--------L-PIVMAIGNRALSA-PINIWNDWQD 123 (394)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEee-eccchHHHHhhHHHH-HHHcc--------C-CEEEEECCCCCCC-CCCcCcchHH
Confidence 459999999999999999999999 689999999998864 44332 5 777763 43332 2233335677
Q ss_pred HHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC------CCcEEEEeccc-ccccccc-----------cCCC---------
Q 017410 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD------PNPVVFFEPKW-LYRLSVE-----------EVPE--------- 222 (372)
Q Consensus 170 ~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~------~~Pv~ir~p~~-l~r~~~~-----------~v~~--------- 222 (372)
.-..+. -++.++.|+|.+|+.++...|++. .-||+++.+.. +.+...+ .++.
T Consensus 124 ~~~~rd-~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d 202 (394)
T PRK08367 124 TISQRD-TGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLD 202 (394)
T ss_pred HHhccc-cCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccC
Confidence 554454 458899999999999999999973 36999999883 4322110 0000
Q ss_pred ------------CCccc--------------------------cCC-ceEEee----eCCcEEEEEeChhHHHHHHHHHH
Q 017410 223 ------------DDYML--------------------------PLS-EAEVIR----EGSDITLVGWGAQLSIMEQACLD 259 (372)
Q Consensus 223 ------------~~~~~--------------------------~~G-k~~v~~----~g~di~ii~~G~~~~~a~~Aa~~ 259 (372)
.+..+ .+| ++..+. +++|++||+||+....+++|++.
T Consensus 203 ~~~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~ 282 (394)
T PRK08367 203 PARPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDK 282 (394)
T ss_pred CCCCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHH
Confidence 00000 012 111121 46899999999999999999999
Q ss_pred HHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCC---CCcHHHHHHHHHHHhccccCCCc----EEEEeccC
Q 017410 260 AEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPV---TGGFGAEISASILERCFLRLEAP----VARVCGLD 332 (372)
Q Consensus 260 L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~---~GGlg~~i~~~l~~~~~~~l~~~----v~~ig~~~ 332 (372)
|+++|++++++++++++|||.+.|.+.+++.++|+|+|.+.. .|.+..+|...|...+ ...+ +..+|++|
T Consensus 283 LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~~~---~~~~v~~~~~glgg~~ 359 (394)
T PRK08367 283 LREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASAALVNES---EKPKILDFIIGLGGRD 359 (394)
T ss_pred HHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhccC---CCCeEEEEEeCCCCCC
Confidence 999999999999999999999999999999999999999963 3668888888885432 1122 34666777
Q ss_pred CCcc
Q 017410 333 TPFP 336 (372)
Q Consensus 333 ~~~~ 336 (372)
.+..
T Consensus 360 ~~~~ 363 (394)
T PRK08367 360 VTFK 363 (394)
T ss_pred CCHH
Confidence 5543
No 45
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.73 E-value=3.8e-16 Score=159.56 Aligned_cols=243 Identities=19% Similarity=0.240 Sum_probs=181.8
Q ss_pred CceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH 165 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~H 165 (372)
+-+++++.+|.-++.+|.|.+..|.|.++. +....+.+|.|.+++ +++. | ..|+++++ +++|..-|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~-mKhVGlNvAsDpl~s-~ay~-----G--v~GGlviv-----~aDDpg~~ 123 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVT-MKHVGLNVASDPLMS-LAYA-----G--VTGGLVIV-----VADDPGMH 123 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEE-ecccccccchhhhhh-hhhc-----C--ccccEEEE-----EccCCCcc
Confidence 789999999999999999999999999999 688889999999874 4432 2 13477776 46666666
Q ss_pred -Chh--HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeccccccccc---------ccCCCCC-cccc
Q 017410 166 -SQS--PEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSV---------EEVPEDD-YMLP 228 (372)
Q Consensus 166 -s~~--d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~~~---------~~v~~~~-~~~~ 228 (372)
||+ |-.++.....+.|+.|+|++|++++++.+++ ..-||++|..+|+.+... +++.+++ +.++
T Consensus 124 SSqneqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k 203 (640)
T COG4231 124 SSQNEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIK 203 (640)
T ss_pred cccchhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccC
Confidence 463 7788888899999999999999999999997 378999998888754321 1111111 1111
Q ss_pred -CCce-------------------------------EEeeeC--CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecc
Q 017410 229 -LSEA-------------------------------EVIREG--SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (372)
Q Consensus 229 -~Gk~-------------------------------~v~~~g--~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 274 (372)
.+++ +.+..+ .++-||+.|..+..+++|.+.| |++..++.+.+
T Consensus 204 ~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~ 280 (640)
T COG4231 204 DPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGT 280 (640)
T ss_pred CccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecC
Confidence 1111 111112 6899999999999999998777 99999999999
Q ss_pred cCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcccccccCCCCcHHHHHHHH
Q 017410 275 LIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLE 354 (372)
Q Consensus 275 i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~lle~~~l~~~~~~~~i~ 354 (372)
.+|||.+.+.+++++-++|+||||..+. +-.++...+.+++ .++ .+++++.- ++-..+-|+.+.+...|.
T Consensus 281 ~~Plp~~~i~~F~~g~~~vlVVEE~~P~--iE~qv~~~l~~~g-----~~v-~v~GKd~g--llP~~GElt~~~i~~ai~ 350 (640)
T COG4231 281 PYPLPEQLIENFLKGLERVLVVEEGEPF--IEEQVKALLYDAG-----LPV-EVHGKDEG--LLPMEGELTPEKIANAIA 350 (640)
T ss_pred CcCCCHHHHHHHHhcCcEEEEEecCCch--HHHHHHHHHHhcC-----Cce-Eeeccccc--ccCcccccCHHHHHHHHH
Confidence 9999999999999999999999999763 6678887777764 233 45566632 233445567776666555
Q ss_pred h
Q 017410 355 S 355 (372)
Q Consensus 355 ~ 355 (372)
.
T Consensus 351 ~ 351 (640)
T COG4231 351 K 351 (640)
T ss_pred H
Confidence 4
No 46
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.68 E-value=1.1e-14 Score=155.05 Aligned_cols=293 Identities=14% Similarity=0.145 Sum_probs=199.6
Q ss_pred CCCCcccHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCccccchhHHHHhC------------------------CCc
Q 017410 35 GSGKSLNLYSAINQALHIALETD---PRAYVFGEDVGFGGVFRCTTGLADRFG------------------------KSR 87 (372)
Q Consensus 35 ~~~~~~~~~~a~~~~L~~l~~~d---~~vv~i~aD~~~gg~~~~~~~~~~~~~------------------------p~r 87 (372)
+..+++|+..||++.|.+|++.. ++||-+.+|.+ .+|+ ++.+.++.| ..|
T Consensus 484 ~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDea--rtfg-m~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq 560 (885)
T TIGR00759 484 SGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEA--RTFG-MEGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQ 560 (885)
T ss_pred CCCCCccHHHHHHHHHHHHhcCcccccceeecCCCcc--ccCC-hHHhhcccCccCCCCccCCccchhhhhhcccCCCCc
Confidence 44578999999999999999863 77999999987 4554 555444321 469
Q ss_pred eEecchhHHHHHH--HHHHHHhc--C--CeeEEEeccccc-HHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC--
Q 017410 88 VFNTPLCEQGIVG--FAIGLAAM--G--NRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-- 158 (372)
Q Consensus 88 ~i~~GIaE~~~vg--~A~GlA~~--G--~~pi~~i~~~~F-~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~-- 158 (372)
+++.||+|.++++ +|+|.|.+ | ++||.. .|+.| ++|..|.+. .++.++ -. .+++.+++|.+
T Consensus 561 ~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi-~YsmFgfqR~gD~~w-aa~d~~-------ar-gfl~g~taGrtTL 630 (885)
T TIGR00759 561 ILQEGINEAGAMASWIAAATSYATHGEPMIPFYI-YYSMFGFQRIGDLCW-AAADQR-------AR-GFLLGATAGRTTL 630 (885)
T ss_pred chhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeE-eeccccccchHHHHH-HHhhhc-------CC-ceEeccCCCcccC
Confidence 9999999999997 67888776 5 899997 59999 999999775 455443 23 66666788863
Q ss_pred CCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC----CCcEEEEecc--cccccccccCCCCC-ccccCC
Q 017410 159 GHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVFFEPK--WLYRLSVEEVPEDD-YMLPLS 230 (372)
Q Consensus 159 g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~----~~Pv~ir~p~--~l~r~~~~~v~~~~-~~~~~G 230 (372)
.+.|..|+ ..-..+...+||+.-+.|+...|+.-++++.++. +..+|.+.+. +-+.+ +..|+.. ..+--|
T Consensus 631 ~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~q--p~~p~~~~egIlkG 708 (885)
T TIGR00759 631 NGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQ--PPMPEGAEEGILKG 708 (885)
T ss_pred CCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCC--CCCCcchHHhHHhC
Confidence 23455664 4444566789999999999999999999998873 5678775544 21211 2222110 112223
Q ss_pred ceEEeee------CCcEEEEEeChhHHHHHHHHHHHHhc-CCceeEEeecccCCCCHHHH-------------------H
Q 017410 231 EAEVIRE------GSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKETV-------------------E 284 (372)
Q Consensus 231 k~~v~~~------g~di~ii~~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~i~P~d~~~l-------------------~ 284 (372)
-+ .+++ +.++.|+++|+.+.+|++|++.|+++ |+.++|+++.+..-|..+.. .
T Consensus 709 ~Y-~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v~ 787 (885)
T TIGR00759 709 LY-RFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYVA 787 (885)
T ss_pred ce-ecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHHH
Confidence 33 3332 24799999999999999999999987 99999999999887766632 1
Q ss_pred HHHhc-CCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccC----CCcccccccCCCCcHHHHHHH
Q 017410 285 ASVRK-TGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLD----TPFPLVFEPFYMPTKNKASCL 353 (372)
Q Consensus 285 ~~~~~-~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~----~~~~~lle~~~l~~~~~~~~i 353 (372)
+.+.. ...||++-+... .+.+.|..+ ++.+..-+|... .+.+.+.+.|+++.+.|+...
T Consensus 788 ~~L~~~~gP~va~tDy~~--~~~~qir~~--------vp~~~~~LGtDgFGrSdtr~~lr~~fevDa~~IV~AA 851 (885)
T TIGR00759 788 QVLNEADAPVIASTDYVR--AFAEQIRPY--------VPRKYVTLGTDGFGRSDTRENLRHFFEVDAKSVVLAA 851 (885)
T ss_pred HHhccCCCCEEEEccchh--hhHHHHhhh--------cCCCceEecCCCCCCCCCHHHHHHHcCCCHHHHHHHH
Confidence 11222 235555555421 133333222 355666665332 233456777888888777643
No 47
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.64 E-value=1.1e-14 Score=154.24 Aligned_cols=318 Identities=18% Similarity=0.224 Sum_probs=232.2
Q ss_pred hhhhhhhhcccCCCccccccccccccCCCcc-CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccc--------
Q 017410 4 GLRRFVGSLSRRNLSTACANKQLIQQHDGGV-GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFR-------- 74 (372)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~-------- 74 (372)
-|+|-+...-+.|-..-.||+-..++.-+.- .....++|..+--.++..|+.+...|-+-|+|...| +|.
T Consensus 850 ~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRG-TF~QRHavl~D 928 (1228)
T PRK12270 850 VLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREGGIDWAFGELLAFGSLLLEGTPVRLSGQDSRRG-TFSQRHAVLID 928 (1228)
T ss_pred HHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcCceeeeeccccCCc-ceeeeeEEEec
Confidence 4788899999999999999998877766655 556788998777778889999999999999998765 332
Q ss_pred --------cchhHHHHhCCCceEecchhHHHHHHHHHHHHhcC--CeeEEEecccccH---HHHHHHHHHHHHhhhhhcC
Q 017410 75 --------CTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYI---FPAFDQIVNEAAKFRYRSG 141 (372)
Q Consensus 75 --------~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G--~~pi~~i~~~~F~---~ra~dqi~~~~a~~~~~~~ 141 (372)
.+..|....++-.++|..++|-+++|+-.|.|.+. ..++|+-+|.+|. |-.+|+++ +.+..+|
T Consensus 929 ~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefI-ss~e~KW--- 1004 (1228)
T PRK12270 929 RETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFI-SSGEAKW--- 1004 (1228)
T ss_pred CCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHHHHHHHH-hhhHhhh---
Confidence 12333333234467899999999999999999984 7788888999996 88999987 4566777
Q ss_pred CCcccccEEEEeCCCCCCCCCCCCC-hhHHHH--HcCCCCcEEEeeCCHHHHHHHHHH-hHhC-CCcEEEEecccccccc
Q 017410 142 NQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAF--FCHVPGLKVVIPRSPRQAKGLLLS-CIRD-PNPVVFFEPKWLYRLS 216 (372)
Q Consensus 142 ~~~~~~pvvi~~~~G~~g~~G~~Hs-~~d~a~--l~~iP~l~V~~Psd~~e~~~~l~~-a~~~-~~Pv~ir~p~~l~r~~ 216 (372)
||. . .||++.|.|.-|. |+-|| .-.+.| |+.-.||+|..|++|.....+|++ ++.. ..|.+++.||.|.|.+
T Consensus 1005 gQ~-S-~vvlLLPHGyEGQ-GPdHSSaRiERfLqlcAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~K 1081 (1228)
T PRK12270 1005 GQR-S-GVVLLLPHGYEGQ-GPDHSSARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLK 1081 (1228)
T ss_pred ccc-c-ceEEEccCCcCCC-CCCcchHHHHHHHHhhccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcch
Confidence 333 4 7888889888775 55564 446665 467899999999999999999995 6654 8899999999998875
Q ss_pred cccCCCCCccccCCceEEe-------ee-CCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh
Q 017410 217 VEEVPEDDYMLPLSEAEVI-------RE-GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR 288 (372)
Q Consensus 217 ~~~v~~~~~~~~~Gk~~v~-------~~-g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~ 288 (372)
...-+.++ |.-|+++-+ .. .-+-+|+|+|-.+....+..+. ...-++.|+++.+|.|||.+.|.+.+.
T Consensus 1082 aA~S~ved--FT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~ 1157 (1228)
T PRK12270 1082 AAVSDVED--FTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALA 1157 (1228)
T ss_pred hhcCCHHH--hccCCceecCCCCCCCCccceeEEEEEcchhHHHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHH
Confidence 32111111 223333311 11 1356799999999988766432 224579999999999999999999988
Q ss_pred cCC---eEEEE-cCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc
Q 017410 289 KTG---RLLIS-HEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP 336 (372)
Q Consensus 289 ~~~---~vivv-Ee~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~ 336 (372)
++. .++++ ||....|-| ..++-.|.+.-- -..++.+++.+....|
T Consensus 1158 ~ypna~e~~wvQeEP~NqGaw-~f~~~~l~~~l~--~~~~lr~VsRpasasP 1206 (1228)
T PRK12270 1158 RYPNATEVVWVQEEPANQGAW-PFMALNLPELLP--DGRRLRRVSRPASASP 1206 (1228)
T ss_pred hCCCcceeEEeccCcccCCCc-hhhhhhhHhhcc--CCCCceEecCCcccCC
Confidence 763 34554 887767777 445555554310 1456788876665444
No 48
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.58 E-value=2.3e-13 Score=135.11 Aligned_cols=237 Identities=18% Similarity=0.205 Sum_probs=162.2
Q ss_pred CceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCCCCCCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAVGHGGH 163 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~g~~G~ 163 (372)
-.|+++= +|.++++++.|++..|.|.+.. +.+..+..+.+.+-. ++.+ .+ |+|+. .++|.+....+
T Consensus 48 ~~~vq~E-sE~~a~s~v~GA~~aGar~~Ta-TSg~Gl~Lm~E~l~~-a~~~--------~~-P~Vi~~~~R~~ps~g~p~ 115 (365)
T COG0674 48 GVFVQME-SEIGAISAVIGASYAGARAFTA-TSGQGLLLMAEALGL-AAGT--------ET-PLVIVVAQRPLPSTGLPI 115 (365)
T ss_pred cEEEEec-cHHHHHHHHHHHHhhCcceEee-cCCccHHHHHHHHHH-HHhc--------cC-CeEEEEeccCcCCCcccc
Confidence 4555554 9999999999999999999999 688887777776653 3322 25 88876 56777765555
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecccccccccc------------cCCC-CCc-
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE------------EVPE-DDY- 225 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~~~~------------~v~~-~~~- 225 (372)
.-.|.|+...+.- ++.+++-+|.+|+.+....|++ ..-|++++.+..+...... .+++ ..+
T Consensus 116 ~~dq~D~~~~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~ 194 (365)
T COG0674 116 KGDQSDLMAARDT-GFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYT 194 (365)
T ss_pred cccHHHHHHHHcc-CceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCccc
Confidence 5568888777765 8888888899999998888876 4789999977644322100 0000 000
Q ss_pred ------cccCC--------------------------------------c----eEEee-eCCcEEEEEeChhHHHHHHH
Q 017410 226 ------MLPLS--------------------------------------E----AEVIR-EGSDITLVGWGAQLSIMEQA 256 (372)
Q Consensus 226 ------~~~~G--------------------------------------k----~~v~~-~g~di~ii~~G~~~~~a~~A 256 (372)
+...| . ..+.. ++++++||+||+....+.++
T Consensus 195 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a 274 (365)
T COG0674 195 ALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEA 274 (365)
T ss_pred ccCCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHH
Confidence 00000 0 01111 57889999999888777777
Q ss_pred HHHH-HhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCc
Q 017410 257 CLDA-EKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF 335 (372)
Q Consensus 257 a~~L-~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~ 335 (372)
+..+ +++|++++++++|+++|||.+.|.+.+++.+++.|++.....|++++-+...+.... ....+.++|+++.++
T Consensus 275 ~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~~~~~l~~~~~~~~---~~~~~~~~~g~~~~~ 351 (365)
T COG0674 275 VVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGGLAEPLYLEVLAAL---YVESRYKLGGRDFTP 351 (365)
T ss_pred HHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCCccchhhHHHHhhcce---eeceeeccCCccCCH
Confidence 6664 588999999999999999999999999988766666655545775544432222211 123467888888765
Q ss_pred ccc
Q 017410 336 PLV 338 (372)
Q Consensus 336 ~~l 338 (372)
+.+
T Consensus 352 ~~i 354 (365)
T COG0674 352 EEI 354 (365)
T ss_pred HHH
Confidence 444
No 49
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.50 E-value=2.6e-12 Score=143.70 Aligned_cols=217 Identities=13% Similarity=0.143 Sum_probs=153.8
Q ss_pred ceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCCCCCCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAVGHGGHY 164 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~g~~G~~ 164 (372)
.|+++= +|.++++++.|.+.+|.+.++. |-+..+....+.+-. ++-. .+ |+|+. .++|...+...+
T Consensus 53 ~~vq~E-sE~~A~~av~GA~~aGara~T~-TSs~GL~LM~e~l~~-~ag~--------~~-P~Vi~va~R~~~~~~~~i~ 120 (1165)
T TIGR02176 53 KVVEMQ-SEAGAAGAVHGALQTGALTTTF-TASQGLLLMIPNMYK-IAGE--------LL-PCVFHVSARAIAAHALSIF 120 (1165)
T ss_pred eEEEcc-chHHHHHHHHhHhhcCCCEEEe-cChhHHHHHHHHHHH-HHhc--------cC-CEEEEEecCCCCCCCCccC
Confidence 355544 9999999999999999999998 567767676776632 2211 24 88876 455554322222
Q ss_pred CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecccc-cccc--ccc---------CCCC-----
Q 017410 165 HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWL-YRLS--VEE---------VPED----- 223 (372)
Q Consensus 165 Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l-~r~~--~~~---------v~~~----- 223 (372)
-.+.|....|. -|+.|++|++.+|+.++...|++ .+.||+++++... .+.. ... +++.
T Consensus 121 ~dh~Dv~~~R~-~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~ 199 (1165)
T TIGR02176 121 GDHQDVMAARQ-TGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAF 199 (1165)
T ss_pred CCchHHHHhhc-CCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccc
Confidence 23567655555 57899999999999999888875 5889999988632 1110 000 0000
Q ss_pred -------------------Cccc--------------------------cCCc----eEEe-eeCCcEEEEEeChhHHHH
Q 017410 224 -------------------DYML--------------------------PLSE----AEVI-REGSDITLVGWGAQLSIM 253 (372)
Q Consensus 224 -------------------~~~~--------------------------~~Gk----~~v~-~~g~di~ii~~G~~~~~a 253 (372)
+..+ -.|. .+.. .++++.+||++|+....+
T Consensus 200 ~~~~l~~~~p~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~ 279 (1165)
T TIGR02176 200 RKRSMNPEHPHVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETI 279 (1165)
T ss_pred cccccCCCCCceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHH
Confidence 0000 0111 1111 246899999999999999
Q ss_pred HHHHHHHHhcCCceeEEeecccCCCCHHHHHHHH-hcCCeEEEEcCCCCCC----cHHHHHHHHHHHh
Q 017410 254 EQACLDAEKEGISCELIDLKTLIPWDKETVEASV-RKTGRLLISHEAPVTG----GFGAEISASILER 316 (372)
Q Consensus 254 ~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~-~~~~~vivvEe~~~~G----Glg~~i~~~l~~~ 316 (372)
.+|++.|+++|+++++|+++.+||||.+.|.+.+ ++.++|+|+|.+...| .|..+|...+...
T Consensus 280 ~eav~~Lr~~G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~~ 347 (1165)
T TIGR02176 280 EETVDYLNAKGEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYEM 347 (1165)
T ss_pred HHHHHHHHhcCCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhhc
Confidence 9999999999999999999999999999999988 5789999999995433 4778888888653
No 50
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.50 E-value=2.5e-12 Score=142.04 Aligned_cols=253 Identities=14% Similarity=0.031 Sum_probs=173.4
Q ss_pred ceEecchhHHHHHHHHHHHH---------hcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLA---------AMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA---------~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~ 157 (372)
-+++++++|.-++++|.|.+ ..|.+.+|+ +..+.+.|+.|.+++ +++. |..+.|+++++
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~-~K~~GvnvaaD~l~~-~n~~-----G~~~~GG~v~v----- 142 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWY-GKGPGVDRAGDALKH-GNAY-----GSSPHGGVLVV----- 142 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEe-cCcCCcccchhHHHH-HHhh-----cCCCCCcEEEE-----
Confidence 78999999999999999999 677777998 699999999999985 3321 22223467765
Q ss_pred CCCCCCCC-Chh--HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeccccccccc-----c--c--CC
Q 017410 158 VGHGGHYH-SQS--PEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSV-----E--E--VP 221 (372)
Q Consensus 158 ~g~~G~~H-s~~--d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~~~-----~--~--v~ 221 (372)
+|+|..-| ||. |-.++...-+|.|+.|+|++|++++.+++++ .+-||.++...++..... + . ..
T Consensus 143 ~gDDpg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~ 222 (1159)
T PRK13030 143 AGDDHGCVSSSMPHQSDFALIAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPA 222 (1159)
T ss_pred EecCCCCccCcCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCC
Confidence 45665555 452 5566666667779999999999999999987 478999988776543210 0 0 00
Q ss_pred CCCccccC-----------------------------------CceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCC-
Q 017410 222 EDDYMLPL-----------------------------------SEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGI- 265 (372)
Q Consensus 222 ~~~~~~~~-----------------------------------Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi- 265 (372)
+.++..+. .+..+..++.++.||++|..+..++||.+.|...++
T Consensus 223 ~~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~ 302 (1159)
T PRK13030 223 PEDFTPPAGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDAD 302 (1159)
T ss_pred ccccCCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCccc
Confidence 11111111 111111124679999999999999999998844332
Q ss_pred ----ceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCC-Ccccccc
Q 017410 266 ----SCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT-PFPLVFE 340 (372)
Q Consensus 266 ----~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~-~~~~lle 340 (372)
.+.|+++.+.+|||.+.+.+++++.++|+||||... =+-.++.+.+.+.. ...++.-+|..+. .-|.+=.
T Consensus 303 ~~~lgirilKvgm~~PL~~~~i~~F~~g~d~VlVVEE~~p--~iE~Qlk~~l~~~~---~~~~~~v~GK~~~~G~pllp~ 377 (1159)
T PRK13030 303 LRAAGIRIYKVGLSWPLEPTRLREFADGLEEILVIEEKRP--VIEQQIKDYLYNRP---GGARPRVVGKHDEDGAPLLSE 377 (1159)
T ss_pred ccccCccEEEeCCccCCCHHHHHHHHhcCCEEEEEeCCch--HHHHHHHHHHHhcc---ccCCceeEEEECCCCCcCCCC
Confidence 378889989999999999999999999999999974 25566776666543 1112233443331 1123333
Q ss_pred cCCCCcHHHHHHHHhC
Q 017410 341 PFYMPTKNKASCLESF 356 (372)
Q Consensus 341 ~~~l~~~~~~~~i~~~ 356 (372)
..-|+++.+...|..+
T Consensus 378 ~gEl~~~~v~~~l~~~ 393 (1159)
T PRK13030 378 LGELRPSLIAPVLAAR 393 (1159)
T ss_pred cCCcCHHHHHHHHHHH
Confidence 4567888777777553
No 51
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.5e-13 Score=136.01 Aligned_cols=319 Identities=22% Similarity=0.311 Sum_probs=220.5
Q ss_pred hhhhhhhhcc-cCCCcccccccccc---ccCCCccCCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcccc----
Q 017410 4 GLRRFVGSLS-RRNLSTACANKQLI---QQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRC---- 75 (372)
Q Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~---- 75 (372)
-|-||.|.-| +.|-|.-+||--.+ |.---+...|-+++|..|-..++..++.+..+|-+-++|+|.| +|..
T Consensus 524 dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGRG-TFshRHAM 602 (913)
T KOG0451|consen 524 DLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHNVRISGQDVGRG-TFSHRHAM 602 (913)
T ss_pred HHHHHhccCceecchhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccCceeeeccccCcc-ccccccee
Confidence 4668887766 45666666663222 1111233788899999999999999999999999999999976 3431
Q ss_pred -----chhH-------HHHh-CCCceEecchhHHHHHHHHHHHHhcC--CeeEEEecccccHH---HHHHHHHHHHHhhh
Q 017410 76 -----TTGL-------ADRF-GKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYIF---PAFDQIVNEAAKFR 137 (372)
Q Consensus 76 -----~~~~-------~~~~-~p~r~i~~GIaE~~~vg~A~GlA~~G--~~pi~~i~~~~F~~---ra~dqi~~~~a~~~ 137 (372)
+++. .... |.--+-|..++|.+.+|+-.|||.+. ..++|+.+|.+|.. -.+|-++- .+..+
T Consensus 603 ~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDFfNGAQIIiDTFi~-sgE~K 681 (913)
T KOG0451|consen 603 LVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDFFNGAQIIIDTFIV-SGETK 681 (913)
T ss_pred eeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhcccccCCcccceeehhhhcccccCceEEEeeeec-ccchh
Confidence 1111 0000 12245567899999999999999995 77889889999974 44454442 34567
Q ss_pred hhcCCCcccccEEEEeCCCCCCCCCCCCC-hhHHHHHc-----------CCCCcEEEeeCCHHHHHHHHHH-hHh-CCCc
Q 017410 138 YRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFC-----------HVPGLKVVIPRSPRQAKGLLLS-CIR-DPNP 203 (372)
Q Consensus 138 ~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs-~~d~a~l~-----------~iP~l~V~~Psd~~e~~~~l~~-a~~-~~~P 203 (372)
|+.. . ++|+..|.|..|.+ +-|| .-.+.++. .--||.|+-|.+|.+...+++. .++ .++|
T Consensus 682 Wl~s----s-glvmLLPHGyDGAg-peHSSCRiERFLQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKP 755 (913)
T KOG0451|consen 682 WLES----S-GLVMLLPHGYDGAG-PEHSSCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKP 755 (913)
T ss_pred hhhh----C-CeEEEccCCcCCCC-CccchhhHHHHHHHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCc
Confidence 8764 4 78888888887764 4564 43455542 2468999999999999999994 444 4999
Q ss_pred EEEEecccccccccc-----cC-CCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCC
Q 017410 204 VVFFEPKWLYRLSVE-----EV-PEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP 277 (372)
Q Consensus 204 v~ir~p~~l~r~~~~-----~v-~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P 277 (372)
.++-.||.|.|.+.. ++ |...|.-.+|....-.+.-+-+|+|+|--.....++.+.+..+. .+.++++.++.|
T Consensus 756 LiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~~~~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCP 834 (913)
T KOG0451|consen 756 LIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDTIAKPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCP 834 (913)
T ss_pred eEEechHHHhhCcchhhhHhhcCCCccccccccccccChhHheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCC
Confidence 999999998877531 11 22233334554422223456789999999888888877664433 489999999999
Q ss_pred CCHHHHHHHHhcCCeE----EEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc
Q 017410 278 WDKETVEASVRKTGRL----LISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP 336 (372)
Q Consensus 278 ~d~~~l~~~~~~~~~v----ivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~ 336 (372)
||.+.|...++|++.+ ..-||+...|-| +.|.-.+... +..+++-.|.++.|.|
T Consensus 835 FPi~~LQa~l~kY~~vqdfvWSQEEprNmGaW-sFVrPRFEn~----lg~~L~~~GRpelp~p 892 (913)
T KOG0451|consen 835 FPIQELQAQLAKYGNVQDFVWSQEEPRNMGAW-SFVRPRFENL----LGQQLHYCGRPELPTP 892 (913)
T ss_pred CchHHHHHHHHhcCChhhhcccccccccCCcc-eeechHHHHH----hhhhheecCCCCCCCc
Confidence 9999999999988644 456999877766 5565554322 3445555555555554
No 52
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.46 E-value=1e-11 Score=127.70 Aligned_cols=230 Identities=17% Similarity=0.154 Sum_probs=161.3
Q ss_pred CCCCcccHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCccccchhHHHHhC------------------------CCc
Q 017410 35 GSGKSLNLYSAINQALHIALETD---PRAYVFGEDVGFGGVFRCTTGLADRFG------------------------KSR 87 (372)
Q Consensus 35 ~~~~~~~~~~a~~~~L~~l~~~d---~~vv~i~aD~~~gg~~~~~~~~~~~~~------------------------p~r 87 (372)
+.++++|+..||...|.++++++ ++||-+.+|.. .+|+ ++.+..+.| ..+
T Consensus 487 ~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDea--rTfg-meg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQ 563 (887)
T COG2609 487 GQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEA--RTFG-MEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQ 563 (887)
T ss_pred ccCccchhHHHHHHHHHHHHhccccCCccccccCchh--hhcc-chhhhhhcccccCCCccCCccchhhhhhhhhCCCcc
Confidence 55667999999999999999953 78999999987 4554 455443221 368
Q ss_pred eEecchhHHHHHH--HHHHHHhc--C--CeeEEEeccccc-HHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC--
Q 017410 88 VFNTPLCEQGIVG--FAIGLAAM--G--NRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-- 158 (372)
Q Consensus 88 ~i~~GIaE~~~vg--~A~GlA~~--G--~~pi~~i~~~~F-~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~-- 158 (372)
+++.||+|.++++ +|+|.|.+ | ++||.. .|+.| ++|.-|.+ +.+|.++ -. +.++.+..|.+
T Consensus 564 iLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi-~YsmFgfqRigD~~-waA~dq~-------AR-gFLlgaTagrtTL 633 (887)
T COG2609 564 ILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYI-YYSMFGFQRIGDLL-WAAGDQD-------AR-GFLLGATAGRTTL 633 (887)
T ss_pred hHHhhhccccHHHHHHHHhcccccCCccceeeee-eechhhhhhHHHHH-HHHHhhh-------hc-ceeEeecCCCcee
Confidence 9999999999997 78888876 4 899997 59999 89999965 4566553 24 56665544432
Q ss_pred CCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-------CCcEEEEecccccccccccCCCCC-ccccC
Q 017410 159 GHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-------PNPVVFFEPKWLYRLSVEEVPEDD-YMLPL 229 (372)
Q Consensus 159 g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-------~~Pv~ir~p~~l~r~~~~~v~~~~-~~~~~ 229 (372)
.+.|..|+ ..-.-.-..+||+.-+.|+...|+.-+++++++. +.-.||+...+-+.+ |..|... .-+.-
T Consensus 634 ngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~~q--Pamp~gae~gI~k 711 (887)
T COG2609 634 NGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQ--PAMPEGAEEGIIK 711 (887)
T ss_pred CccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcCCC--CCCCCcchhhhhh
Confidence 23455563 3322334579999999999999999999999972 335677333322221 2222211 11222
Q ss_pred CceEEee--e--CCcEEEEEeChhHHHHHHHHHHHHh-cCCceeEEeecccCCCC
Q 017410 230 SEAEVIR--E--GSDITLVGWGAQLSIMEQACLDAEK-EGISCELIDLKTLIPWD 279 (372)
Q Consensus 230 Gk~~v~~--~--g~di~ii~~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~i~P~d 279 (372)
|-+.... + +.++.|+++|....+|++|++.|++ -|+.++|..+.+..-|.
T Consensus 712 G~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~ 766 (887)
T COG2609 712 GIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELA 766 (887)
T ss_pred ceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHh
Confidence 3222211 1 4789999999999999999999998 59999999998876554
No 53
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.45 E-value=1.3e-11 Score=136.05 Aligned_cols=300 Identities=15% Similarity=0.066 Sum_probs=194.0
Q ss_pred CCCCc-ccHHHHHHHHHHHHHhcC--CCE---EEEeCCCCCCC-ccccchhHHHHhC----CCceEecchhHHHHHHHH-
Q 017410 35 GSGKS-LNLYSAINQALHIALETD--PRA---YVFGEDVGFGG-VFRCTTGLADRFG----KSRVFNTPLCEQGIVGFA- 102 (372)
Q Consensus 35 ~~~~~-~~~~~a~~~~L~~l~~~d--~~v---v~i~aD~~~gg-~~~~~~~~~~~~~----p~r~i~~GIaE~~~vg~A- 102 (372)
.+|+. ++=.+|+.+.+.+..+.| -.+ -++++=- |+ +.+..+.|++.-. .+-++++|++|.-+++++
T Consensus 22 ~~g~~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYp--GsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~ 99 (1165)
T PRK09193 22 ERGRVFLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYR--GSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVW 99 (1165)
T ss_pred ccCCeeeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeC--CCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHh
Confidence 34443 455677777776655555 223 2332211 11 1112333433210 137899999999999999
Q ss_pred --------HHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCC-Chh--HHH
Q 017410 103 --------IGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQS--PEA 171 (372)
Q Consensus 103 --------~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~H-s~~--d~a 171 (372)
.|.+..|.+.+|+ +..+.+.|+.|.+++ +.+. |..+.|+++++ .|+|..-| ||. |-.
T Consensus 100 GsQ~~~~~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~-~n~~-----G~~~~GGvv~v-----~gDDpg~~SSq~eqdSr 167 (1165)
T PRK09193 100 GSQQVNLFPGAKYDGVFGMWY-GKGPGVDRSGDVFRH-ANAA-----GTSPHGGVLAL-----AGDDHAAKSSTLPHQSE 167 (1165)
T ss_pred hhcccccccceeeccceEEEe-cCcCCccccHhHHHH-HHhh-----cCCCCCcEEEE-----EecCCCCccccchhhhH
Confidence 7779999999999 699999999999985 3321 22233477766 45565545 342 555
Q ss_pred HHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeccccccccc-----c---c-CCCCCccccCC----ce--
Q 017410 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSV-----E---E-VPEDDYMLPLS----EA-- 232 (372)
Q Consensus 172 ~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~~~-----~---~-v~~~~~~~~~G----k~-- 232 (372)
++...-+|.|+.|+|++|++++.++++. ..-||.++...++..... + . ..+.++..+.+ +|
T Consensus 168 ~~~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~ 247 (1165)
T PRK09193 168 HAFKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPD 247 (1165)
T ss_pred HHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCC
Confidence 5555566779999999999999999886 478999987776543210 0 0 00111222222 11
Q ss_pred --------------------------E-Eeee--CCcEEEEEeChhHHHHHHHHHHHHhcCCc--------eeEEeeccc
Q 017410 233 --------------------------E-VIRE--GSDITLVGWGAQLSIMEQACLDAEKEGIS--------CELIDLKTL 275 (372)
Q Consensus 233 --------------------------~-v~~~--g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~--------v~vi~~~~i 275 (372)
+ +... +.++-||++|..+..+++|.+.| |++ +.++++.+.
T Consensus 248 ~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~~~~~gi~ilKvgm~ 324 (1165)
T PRK09193 248 PPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEETAARLGIRLYKVGMV 324 (1165)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhhhcccCCCEEEeCCC
Confidence 1 1111 36799999999999999998877 665 899999999
Q ss_pred CCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCC-cccccccCCCCcHHHHHHHH
Q 017410 276 IPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTP-FPLVFEPFYMPTKNKASCLE 354 (372)
Q Consensus 276 ~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~-~~~lle~~~l~~~~~~~~i~ 354 (372)
+|||.+.+.+.+++.+.|+||||-... +-++|.+.+.+.. ...+..-+|..+.. -+.+=...-|+++.+...+.
T Consensus 325 ~PL~~~~i~~Fa~g~~~vlVVEE~~p~--iE~qlk~~l~~~~---~~~rp~v~GK~~~~g~~llp~~gEl~~~~va~~l~ 399 (1165)
T PRK09193 325 WPLEPQGVRAFAEGLDEILVVEEKRQI--IEYQLKEELYNWP---DDVRPRVIGKFDPQGNWLLPAHGELSPAIIAKAIA 399 (1165)
T ss_pred CCCCHHHHHHHHhcCCEEEEEecCchH--HHHHHHHHHhhcc---CCcCceeEeeeCCCCCccCCCcCCcCHHHHHHHHH
Confidence 999999999999999999999998643 6667777776553 23222335443311 01222335577787777775
Q ss_pred hC
Q 017410 355 SF 356 (372)
Q Consensus 355 ~~ 356 (372)
.+
T Consensus 400 ~~ 401 (1165)
T PRK09193 400 RR 401 (1165)
T ss_pred HH
Confidence 43
No 54
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.39 E-value=7.7e-12 Score=128.12 Aligned_cols=302 Identities=19% Similarity=0.224 Sum_probs=217.5
Q ss_pred hhhhhhhcccCCCccccccccccccCCCcc-CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcccc--------
Q 017410 5 LRRFVGSLSRRNLSTACANKQLIQQHDGGV-GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRC-------- 75 (372)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~-------- 75 (372)
|.--|.-+|+.|-...+|---+|-+.-+.- -+.+.++|.-+-..+...|+++.-.|-+-|+|+..| +|..
T Consensus 613 L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~~~iDwal~EalAFgsLl~EG~hVRlSGQDVERG-TFShRH~VLHDQ 691 (1017)
T KOG0450|consen 613 LKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKSEGVDWALAEALAFGSLLKEGIHVRLSGQDVERG-TFSHRHHVLHDQ 691 (1017)
T ss_pred HHHHHHhhccCCcccchhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhcCceEEeeccccccc-ccccchhhhccc
Confidence 455677788888777777766665555443 333778898888888889999999999999999876 4431
Q ss_pred ---------chhHHHHhCCCceEecchhHHHHHHHHHHHHhc--CCeeEEEecccccH---HHHHHHHHHHHHhhhhhcC
Q 017410 76 ---------TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM--GNRAIAEIQFADYI---FPAFDQIVNEAAKFRYRSG 141 (372)
Q Consensus 76 ---------~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~--G~~pi~~i~~~~F~---~ra~dqi~~~~a~~~~~~~ 141 (372)
+..+.....|=-+-|..++|-+.+|+-.|.|++ ...++|+-+|++|. |..+||++ +.+..+|-.
T Consensus 692 ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFI-ssGqaKW~r- 769 (1017)
T KOG0450|consen 692 EVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFI-SSGQAKWVR- 769 (1017)
T ss_pred ccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEEeehhhccccccchhhHHhHh-ccchhhhhh-
Confidence 111111111335678999999999999999998 58888888999995 89999997 455667754
Q ss_pred CCcccccEEEEeCCCCCCCCCCCCChhHHHHHcC-------C-------------CCcEEEeeCCHHHHHHHHHHhHh--
Q 017410 142 NQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCH-------V-------------PGLKVVIPRSPRQAKGLLLSCIR-- 199 (372)
Q Consensus 142 ~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~-------i-------------P~l~V~~Psd~~e~~~~l~~a~~-- 199 (372)
.. ++|+..|.|..|.++.|.|.-.+.+|.. + =||.|+.+++|..++.+++.-+.
T Consensus 770 ---qs-GlVllLPHGyeG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~ 845 (1017)
T KOG0450|consen 770 ---QS-GLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRP 845 (1017)
T ss_pred ---hc-CeEEEccCCcCCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhc
Confidence 34 8888889888776444334445554421 2 37899999999999999996554
Q ss_pred CCCcEEEEecccccccccc-----cCCCC-Ccc---ccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEE
Q 017410 200 DPNPVVFFEPKWLYRLSVE-----EVPED-DYM---LPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (372)
Q Consensus 200 ~~~Pv~ir~p~~l~r~~~~-----~v~~~-~~~---~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi 270 (372)
.++|.+|+.||.|.|.+.. ++.+. .+. -+-|+.-.-.++-+-+|+|+|..+....++.+....++ ++.+.
T Consensus 846 FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~~-~vAi~ 924 (1017)
T KOG0450|consen 846 FRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGLEG-DVAIT 924 (1017)
T ss_pred ccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceEEEEecceEehhhhHHHHhcCccc-ceeEE
Confidence 4899999999999888642 11111 111 01244433345677889999999988877776554222 79999
Q ss_pred eecccCCCCHHHHHHHHhcCC--eEEEE-cCCCCCCcHHHHHHHHHHH
Q 017410 271 DLKTLIPWDKETVEASVRKTG--RLLIS-HEAPVTGGFGAEISASILE 315 (372)
Q Consensus 271 ~~~~i~P~d~~~l~~~~~~~~--~vivv-Ee~~~~GGlg~~i~~~l~~ 315 (372)
++.+|.|||.+.+.+.++++. .+++. |||-..|.| ++|.-.+..
T Consensus 925 RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w-~Yv~PRl~T 971 (1017)
T KOG0450|consen 925 RVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAW-DYVEPRLRT 971 (1017)
T ss_pred EeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCch-hhcchHHHH
Confidence 999999999999999999875 56665 888766666 666555543
No 55
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.37 E-value=3.1e-11 Score=133.03 Aligned_cols=250 Identities=15% Similarity=0.105 Sum_probs=170.2
Q ss_pred CceEecchhHHHH---------HHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCC
Q 017410 86 SRVFNTPLCEQGI---------VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG 156 (372)
Q Consensus 86 ~r~i~~GIaE~~~---------vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G 156 (372)
+-++++|++|.-+ +.++.|.+..|.+.+|+ +..+.+.|+-|.+++.... +.. ..|+++++
T Consensus 85 ~i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwy-gK~pGvn~aaD~l~h~n~~--gt~----~~GGvv~v---- 153 (1186)
T PRK13029 85 DVVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWY-GKGPGVDRSGDALRHANLA--GTS----PLGGVLVL---- 153 (1186)
T ss_pred ceEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEe-cCcCCcccchhHHHHhhcc--ccC----CCCcEEEE----
Confidence 3789999999999 77777777889999999 7999999999999853311 111 23467665
Q ss_pred CCCCCCCCC-Chh--HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeccccccccc-----c---c-C
Q 017410 157 AVGHGGHYH-SQS--PEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSV-----E---E-V 220 (372)
Q Consensus 157 ~~g~~G~~H-s~~--d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~~~-----~---~-v 220 (372)
.|+|..-| ||. |-.++...-+|.|+.|+|++|++++..++++ ..-||.++..+++..... + . .
T Consensus 154 -~gDDpg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~ 232 (1186)
T PRK13029 154 -AGDDHGAKSSSVAHQSDHTFIAWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIV 232 (1186)
T ss_pred -EecCCCCccccCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccC
Confidence 35555555 342 4445544456779999999999999999886 478999988776543321 0 0 0
Q ss_pred CCCCccccCC--------------------------------ceE-Ee--eeCCcEEEEEeChhHHHHHHHHHHHHhcCC
Q 017410 221 PEDDYMLPLS--------------------------------EAE-VI--REGSDITLVGWGAQLSIMEQACLDAEKEGI 265 (372)
Q Consensus 221 ~~~~~~~~~G--------------------------------k~~-v~--~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi 265 (372)
.+.++..+.| ..+ +. .++.++-||++|..+..+++|.+.| |+
T Consensus 233 ~p~~f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l---gl 309 (1186)
T PRK13029 233 LPDDFVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL---GL 309 (1186)
T ss_pred CcccccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc---CC
Confidence 0111111111 001 11 1246799999999999999998877 66
Q ss_pred c--------eeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccC-----
Q 017410 266 S--------CELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLD----- 332 (372)
Q Consensus 266 ~--------v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~----- 332 (372)
+ +.|+++.+.+|||.+.+.+.+++.+.|+||||-... +-++|.+.+.+.. ...+..-+|..+
T Consensus 310 ~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p~--iE~qlk~~l~~~~---~~~rp~v~GK~~~~~~~ 384 (1186)
T PRK13029 310 DDATCAALGIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRAV--IEYQLKEELYNWR---EDVRPAIFGKFDHRDGA 384 (1186)
T ss_pred ChhhccccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCchH--HHHHHHHHHhhcc---CCcCCeeEecccccccc
Confidence 5 899999999999999999999999999999998643 6667777776543 222223344333
Q ss_pred ------CC-cccccccCCCCcHHHHHHHHh
Q 017410 333 ------TP-FPLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 333 ------~~-~~~lle~~~l~~~~~~~~i~~ 355 (372)
.. -+.+=...-|+++.+...+..
T Consensus 385 ~~~~~~~~g~~llp~~gEL~p~~va~~l~~ 414 (1186)
T PRK13029 385 GGEWSVPAGRWLLPAHAELSPALIAKAIAR 414 (1186)
T ss_pred cccccccccCCCCCcccCcCHHHHHHHHHH
Confidence 00 012223355777777666644
No 56
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.36 E-value=1.5e-11 Score=106.65 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=89.7
Q ss_pred HHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEe-CCCCCC
Q 017410 81 DRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVG 159 (372)
Q Consensus 81 ~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~-~~G~~g 159 (372)
++. +++.+..+++|++++++|.|+|+.|.+|++.+++.+|+.++++++. +++..+ . ||+++. ..+...
T Consensus 31 ~~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~~--------~-Pvl~i~~~~~~~~ 99 (154)
T cd06586 31 REG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAEH--------L-PVVFLIGARGISA 99 (154)
T ss_pred hcc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhcC--------C-CEEEEeCCCChhh
Confidence 445 8999999999999999999999998899888777999999999998 454332 5 988874 344333
Q ss_pred C-CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH---HhHhCCCcEEEEecc
Q 017410 160 H-GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL---SCIRDPNPVVFFEPK 210 (372)
Q Consensus 160 ~-~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~---~a~~~~~Pv~ir~p~ 210 (372)
. .+.+|..++.++++.+|++.+..|++.++...+.+ .+...++||+|+.|+
T Consensus 100 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 100 QAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred hccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEccC
Confidence 3 34444467889999999999988877655543332 233457899997663
No 57
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.31 E-value=6.4e-12 Score=133.38 Aligned_cols=300 Identities=22% Similarity=0.339 Sum_probs=214.9
Q ss_pred hhhhhhhhhcccCCCccccccccccccCCCcc--CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcccc-----
Q 017410 3 SGLRRFVGSLSRRNLSTACANKQLIQQHDGGV--GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRC----- 75 (372)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~----- 75 (372)
..|+.-+.-+++.|-+...||+-.+....+.- ..+..++|..|-..+...++.+...+.+-++|.+.| +|..
T Consensus 527 ~~L~~L~~kl~~~Pe~f~~h~~v~~~~~~r~~~~~~~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RG-TF~hRHaVl 605 (906)
T COG0567 527 KTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMAEGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRG-TFSHRHAVL 605 (906)
T ss_pred HHHHHHHHHhhcCCcceehhHHHHHHHHHHHHHhccccccchhHHHHhcccceeccCCccccccccCCCc-Cccccceee
Confidence 46788899999999999999998886666665 567789999999999999999999999999999865 3431
Q ss_pred -----------chhHHHHhCCCceEecchhHHHHHHHHHHHHhcC--CeeEEEecccccH---HHHHHHHHHHHHhhhhh
Q 017410 76 -----------TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYI---FPAFDQIVNEAAKFRYR 139 (372)
Q Consensus 76 -----------~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G--~~pi~~i~~~~F~---~ra~dqi~~~~a~~~~~ 139 (372)
+..+...-+.=.++|.+.+|.+++++-.|-|..- ...+++-+|.+|. |..+||.+ +.+.++|-
T Consensus 606 hdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfi-sSge~KW~ 684 (906)
T COG0567 606 HDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFI-SSGEQKWG 684 (906)
T ss_pred ecccCccccChhhhcccccceEEEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeecccc-ccHHHHHH
Confidence 1112222123367899999999999999999984 4445555999996 89999987 45566774
Q ss_pred cCCCcccccEEEEeCCCCCCCCCCCCC-hhHHHHH--cCCCCcEEEeeCCHHHHHHHHHH-hHh-CCCcEEEEecccccc
Q 017410 140 SGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFF--CHVPGLKVVIPRSPRQAKGLLLS-CIR-DPNPVVFFEPKWLYR 214 (372)
Q Consensus 140 ~~~~~~~~pvvi~~~~G~~g~~G~~Hs-~~d~a~l--~~iP~l~V~~Psd~~e~~~~l~~-a~~-~~~Pv~ir~p~~l~r 214 (372)
. .. ++|...|.|.-|. |+.|| .-.+.++ +.--||+|+.|++|.+.+.+++. +.. ...|.+|..||.+.|
T Consensus 685 r----~s-gLv~lLPHgyEGQ-GPEHSSaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR 758 (906)
T COG0567 685 R----MS-GLVMLLPHGYEGQ-GPEHSSARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLR 758 (906)
T ss_pred H----hc-CceEEccCCCCCC-CCcCccchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhh
Confidence 4 24 7777778887664 55675 3355544 45569999999999999999995 444 489999999999988
Q ss_pred cccc-----cCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcC-CceeEEeecccCCCCHHHHHHHHh
Q 017410 215 LSVE-----EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEG-ISCELIDLKTLIPWDKETVEASVR 288 (372)
Q Consensus 215 ~~~~-----~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~G-i~v~vi~~~~i~P~d~~~l~~~~~ 288 (372)
.+.. ++....+..-++.........+.+++|+|-+.....+.. ++.| .++.++++.++.|||.+.+.+.++
T Consensus 759 ~~~a~S~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~ 835 (906)
T COG0567 759 HKLAVSSLEELTEGTFQPVLEDIDELDPKVKRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLA 835 (906)
T ss_pred ccccCCchhhhchhhhhhhhccccccccceeeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHH
Confidence 6421 111111111111110111124567889999888776655 4444 489999999999999999999888
Q ss_pred cC---CeEEEE-cCCCCCCcHHHHHHHHHH
Q 017410 289 KT---GRLLIS-HEAPVTGGFGAEISASIL 314 (372)
Q Consensus 289 ~~---~~vivv-Ee~~~~GGlg~~i~~~l~ 314 (372)
++ +.+++. ||....|.|.- +...+.
T Consensus 836 ~y~~~~e~vW~QEEp~N~Gaw~~-~~~~l~ 864 (906)
T COG0567 836 KYPNVKEFVWCQEEPKNQGAWYY-IQPHLE 864 (906)
T ss_pred hccccccccccccCCCccccHHH-HHHHHH
Confidence 76 344554 88877787743 444443
No 58
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=7.3e-07 Score=92.80 Aligned_cols=309 Identities=17% Similarity=0.208 Sum_probs=176.7
Q ss_pred ccHHHHHHHHHHHHHhcCCC-EEEEeCCCC----CCCccccchhHH--HHh------C-CCceEecchhHHHHHHHHHHH
Q 017410 40 LNLYSAINQALHIALETDPR-AYVFGEDVG----FGGVFRCTTGLA--DRF------G-KSRVFNTPLCEQGIVGFAIGL 105 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~-vv~i~aD~~----~gg~~~~~~~~~--~~~------~-p~r~i~~GIaE~~~vg~A~Gl 105 (372)
.....++++.+.++++.|++ ..++++|-. .++.+..++... ... . ..|+++ ..+|+...|.+.|.
T Consensus 401 ~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy 479 (793)
T COG3957 401 AESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGY 479 (793)
T ss_pred hhhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHH
Confidence 33457999999999999988 999999965 223333333221 111 1 358888 89999999999999
Q ss_pred HhcCCeeEEEecccccH---HHHHHHHH--HHHH-hhhhhcCCCcccccEEEEeCCCC--CCCCCCCCCh-hHH-HHHcC
Q 017410 106 AAMGNRAIAEIQFADYI---FPAFDQIV--NEAA-KFRYRSGNQFNCGGLTVRAPYGA--VGHGGHYHSQ-SPE-AFFCH 175 (372)
Q Consensus 106 A~~G~~pi~~i~~~~F~---~ra~dqi~--~~~a-~~~~~~~~~~~~~pvvi~~~~G~--~g~~G~~Hs~-~d~-a~l~~ 175 (372)
++.|.+-+++ +|-.|+ .-++.|.. ...+ ...|+. +...+.++..++. -+.+|.+||. ..+ .++..
T Consensus 480 ~LtGr~glf~-sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~----~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k 554 (793)
T COG3957 480 LLTGRHGLFA-SYEAFAHIVDSMFNQHAKWLKVTREVEWRR----PIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANK 554 (793)
T ss_pred HhcCCcccee-eHHHHHHHHHHHHhhhHHHHHHHHhcccCC----CCCcccceeehhhhhcccCCCccCCchHHHHHHhh
Confidence 9999999999 699986 23333321 1111 112322 2323444444442 4678999973 333 34444
Q ss_pred CCC-cEEEeeCCHHHHHHHHHHhHhCCC-cEEEEecccccccccccCCCCC---ccccCCc--eEEee--e-CCcEEEEE
Q 017410 176 VPG-LKVVIPRSPRQAKGLLLSCIRDPN-PVVFFEPKWLYRLSVEEVPEDD---YMLPLSE--AEVIR--E-GSDITLVG 245 (372)
Q Consensus 176 iP~-l~V~~Psd~~e~~~~l~~a~~~~~-Pv~ir~p~~l~r~~~~~v~~~~---~~~~~Gk--~~v~~--~-g~di~ii~ 245 (372)
.++ +.|+.|.|++-+..++.+|++.++ --+|-.+|. +.+....-+ ....-|. ++... + ..|+++.+
T Consensus 555 ~~d~vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~----p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~ 630 (793)
T COG3957 555 KSDIVRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQ----PRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMAC 630 (793)
T ss_pred ccCceeEecCCCCcchhhhhhHHhhccCceEEEEecCC----CcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEe
Confidence 555 789999999999999999998633 222223332 111110000 0111221 22111 1 35799999
Q ss_pred eChh-HHHHHHHHHHHHhcC--CceeEEe---ecccCCC-------CHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHH
Q 017410 246 WGAQ-LSIMEQACLDAEKEG--ISCELID---LKTLIPW-------DKETVEASVRKTGRLLISHEAPVTGGFGAEISAS 312 (372)
Q Consensus 246 ~G~~-~~~a~~Aa~~L~~~G--i~v~vi~---~~~i~P~-------d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~ 312 (372)
.|.+ +-++++|+..|++++ ++++||+ +..+.|- +.+...+...+.++++.. ..|....|-..
T Consensus 631 ~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif~-----fHGy~~li~~L 705 (793)
T COG3957 631 AGDVPTIEVLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIFL-----FHGYPWLIHAL 705 (793)
T ss_pred cCCcchHHHHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCcceeee-----ecCcHHHhhhh
Confidence 9987 588999999999998 7766555 4445443 234455545455666543 24444444333
Q ss_pred HHHh-ccccCCCcEEEE---eccCCCccc-c---cccCCCCcHHHHHHHHhCCCChHHHHHh
Q 017410 313 ILER-CFLRLEAPVARV---CGLDTPFPL-V---FEPFYMPTKNKASCLESFKVPAQHCCMN 366 (372)
Q Consensus 313 l~~~-~~~~l~~~v~~i---g~~~~~~~~-l---le~~~l~~~~~~~~i~~~~~~~~~~~~~ 366 (372)
+... +-. ..-|..+ |....|++. . +++|++. .+.++++-..+.++-.+|.+
T Consensus 706 ~y~r~~~~--~~~v~Gy~e~G~tttp~dm~v~n~~dRf~~~-~~a~~~l~~~~~~~~~~~~~ 764 (793)
T COG3957 706 TYRRTNHA--NLHVEGYRERGTTTTPFDMFVLNRLDRFHLV-ADAGQRLPQNGLTAAYLAQA 764 (793)
T ss_pred heeccCCC--ceeEeehhhcCCcCCchhhHHhccchhHHHH-HHHHHHHhhccchHHHHHHH
Confidence 3222 100 1112222 111223332 2 3466655 55667777788884444433
No 59
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.61 E-value=1.8e-07 Score=87.36 Aligned_cols=114 Identities=19% Similarity=0.150 Sum_probs=80.2
Q ss_pred eEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCCCCCCCCC
Q 017410 88 VFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAVGHGGHYH 165 (372)
Q Consensus 88 ~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~g~~G~~H 165 (372)
.+...-+|.++++++.|+|++|.|.++. +.+..+..+.|.|-. ++..+ + |+|++ .+.|...+...+.
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~-ts~~Gl~lm~e~l~~-a~~~~--------~-P~V~~~~~R~g~~~g~~~~~ 106 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTA-TSGPGLNLMAEPLYW-AAGTE--------L-PIVIVVVQRAGPSPGLSTQP 106 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEE-EECCHHHHHCCCHHH-HHHTT-----------EEEEEEEB---SSSB--SB
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEe-ecCCcccccHhHHHH-HHHcC--------C-CEEEEEEECCCCCCCCcCcC
Confidence 6778889999999999999999999998 688888888888764 44333 4 76665 5666554333333
Q ss_pred ChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeccccc
Q 017410 166 SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLY 213 (372)
Q Consensus 166 s~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~ 213 (372)
.|.|..+.+ --++.|+.|+|++|++++...|++ .+.||+++.+..+.
T Consensus 107 ~q~D~~~~~-d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 107 EQDDLMAAR-DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC 157 (230)
T ss_dssp -SHHHHHTT-TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC
T ss_pred ChhHHHHHH-hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh
Confidence 467777766 457889999999999999999987 48999999988776
No 60
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.62 E-value=0.0037 Score=54.57 Aligned_cols=110 Identities=20% Similarity=0.166 Sum_probs=75.0
Q ss_pred CCceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CCCCCCCC-
Q 017410 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVGHGG- 162 (372)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G~~g~~G- 162 (372)
.-+++.+- .|++++.+|.|.++.|.+.++. +..+.+..+.+.+.+ +... .. ||+++.. ....+.+.
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~-~~gpG~~n~~~~l~~-a~~~--------~~-P~v~i~g~~~~~~~~~~ 108 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTA-TSGPGLNLMAEALYL-AAGA--------EL-PLVIVVAQRPGPSTGLP 108 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEe-eCcchHHHHHHHHHH-HHhC--------CC-CEEEEEeeCCCCCCCCC
Confidence 45788887 9999999999999999885554 678888888888764 3211 24 8888742 22222111
Q ss_pred CCCChh-HH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC----CCcEEEEe
Q 017410 163 HYHSQS-PE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVFFE 208 (372)
Q Consensus 163 ~~Hs~~-d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~----~~Pv~ir~ 208 (372)
..++++ |. .+++. -..++.+.+++|+.++++.|++. ++||+++.
T Consensus 109 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 109 KPDQSDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CcCcHHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 112232 33 34433 56688899999999999988862 68999965
No 61
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.55 E-value=0.0031 Score=56.06 Aligned_cols=151 Identities=17% Similarity=0.277 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhcCC-CEEEEeCCCCCC----Cccccchh-HH-HHh--------CCCceEecchhHHHHHHHHHHHHhc
Q 017410 44 SAINQALHIALETDP-RAYVFGEDVGFG----GVFRCTTG-LA-DRF--------GKSRVFNTPLCEQGIVGFAIGLAAM 108 (372)
Q Consensus 44 ~a~~~~L~~l~~~d~-~vv~i~aD~~~g----g~~~~~~~-~~-~~~--------~p~r~i~~GIaE~~~vg~A~GlA~~ 108 (372)
.++++.|.++++.|| +..++++|-..+ ..|..++. +. +.. .+++-+..-.+|+...|...|..+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 578888999999876 688999996521 12222221 10 110 1235566678999999999999999
Q ss_pred CCeeEEEecccccH---HHHHHHHHH---HHHhhhhhcCCCcccccEEEE-eCCC-CCCCCCCCCCh-hHH-HHHcCCCC
Q 017410 109 GNRAIAEIQFADYI---FPAFDQIVN---EAAKFRYRSGNQFNCGGLTVR-APYG-AVGHGGHYHSQ-SPE-AFFCHVPG 178 (372)
Q Consensus 109 G~~pi~~i~~~~F~---~ra~dqi~~---~~a~~~~~~~~~~~~~pvvi~-~~~G-~~g~~G~~Hs~-~d~-a~l~~iP~ 178 (372)
|-+-++. +|-.|+ .-++.|-.. ......|+. +...+.++ +... --+++|-+||. ..+ .++...|+
T Consensus 82 Grhglf~-sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~----~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~ 156 (179)
T PF03894_consen 82 GRHGLFA-SYEAFAHIVDSMLNQHAKWLRHARELPWRA----PIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPD 156 (179)
T ss_dssp T-EEEEE-EEGGGGGGGHHHHHHHHHHHHHHHH-TTS-------B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T
T ss_pred CCccccc-ccchhHHHHHHHHHHHHHHHHHHHhCcCCC----CCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcc
Confidence 9999998 699996 344444321 112233433 33234444 3333 24678999974 333 56666666
Q ss_pred -cEEEeeCCHHHHHHHHHHhHh
Q 017410 179 -LKVVIPRSPRQAKGLLLSCIR 199 (372)
Q Consensus 179 -l~V~~Psd~~e~~~~l~~a~~ 199 (372)
+.|+.|.|++-+..+++.|++
T Consensus 157 ~~RvylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 157 VVRVYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp -EEEEE-SSHHHHHHHHHHHHH
T ss_pred cceeecCCcHhHHHHHHHHHhc
Confidence 789999999999999999875
No 62
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.19 E-value=0.0045 Score=53.67 Aligned_cols=112 Identities=23% Similarity=0.218 Sum_probs=74.5
Q ss_pred CceEecchhHHHHHHHHHHHHhcCC-eeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CCCCCCCCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAMGN-RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVGHGGH 163 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~-~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G~~g~~G~ 163 (372)
-|++.+ ..|++++.+|.|.++.+- .+++..+..+-+..+.+.|.+ +... .. ||+++.. .+....+..
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~-A~~~--------~~-Pll~i~~~~~~~~~~~~ 103 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN-AYLD--------SI-PLLVITGQRPTAGEGRG 103 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH-HHhh--------CC-CEEEEeCCCccccccCC
Confidence 355554 499999999999999954 555555667888888887764 3222 25 8888743 222222222
Q ss_pred CCCh-hHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEec
Q 017410 164 YHSQ-SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEP 209 (372)
Q Consensus 164 ~Hs~-~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p 209 (372)
+|+. ....+++.+-.+ .+...+++++...++.|++ . ++||||..|
T Consensus 104 ~~q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 104 AFQEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred cccccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 2332 344677777666 6677788999988888886 2 689999654
No 63
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.63 E-value=0.038 Score=49.01 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=73.1
Q ss_pred CceEecchhHHHHHHHHHHHHhcCCeeEEE-ecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEe-CCCCCC-CCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVG-HGG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~-i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~-~~G~~g-~~G 162 (372)
-|++. .-.|++++.+|.|.++.+-+|-+. .+..+-+..+..-+.+ ++. . .. ||+++. ..+... ..+
T Consensus 40 i~~i~-~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~--A~~---~----~~-Pvl~i~g~~~~~~~~~~ 108 (172)
T PF02776_consen 40 IRFIP-VRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLAN--AYA---D----RI-PVLVITGQRPSAGEGRG 108 (172)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHH--HHH---T----T--EEEEEEEESSGGGTTTT
T ss_pred eeeec-ccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHhh--ccc---c----ee-eEEEEecccchhhhccc
Confidence 46666 459999999999999886555444 3344445555555543 221 1 25 888773 233222 234
Q ss_pred CCC-ChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEecccccc
Q 017410 163 HYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (372)
Q Consensus 163 ~~H-s~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~r 214 (372)
..| ..+...+++.+-.+ .+.+.++.++...++.|++ .++||+|..|..+..
T Consensus 109 ~~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv~~ 165 (172)
T PF02776_consen 109 AFQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDVQE 165 (172)
T ss_dssp STTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHHHT
T ss_pred ccccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhHhh
Confidence 445 34455788887765 6666777777777776664 489999988876543
No 64
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=95.92 E-value=0.29 Score=51.96 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=75.9
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G 162 (372)
=|++.+- .|++++.+|.|.|+. |...++..++.+.+..++--|.+ | |.. .. ||++++..-... ..+
T Consensus 44 i~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~--A---~~~----~~-Pvl~I~g~~~~~~~~~~ 112 (588)
T PRK07525 44 IRFIDVA-HEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVAT--A---YWA----HT-PVVLVTPQAGTKTIGQG 112 (588)
T ss_pred CCEEEec-CHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH--H---hhc----CC-CEEEEeCCCCcccCCCC
Confidence 3555554 999999999999987 66666666788887777665543 2 222 25 998875322211 112
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYR 214 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r 214 (372)
..+..+...+++.+-.. .....++.++...++.|++ .++||||-.|.-+..
T Consensus 113 ~~q~~d~~~l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~~ 167 (588)
T PRK07525 113 GFQEAEQMPMFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYFY 167 (588)
T ss_pred CCcccchhhhhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHhh
Confidence 22223455788887665 4555677777777776664 579999988876643
No 65
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=95.78 E-value=1.2 Score=46.79 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=76.1
Q ss_pred ceEecchhHHHHHHHHHHHHhcCC-eeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC--CCCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAMGN-RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~-~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~--g~~G~ 163 (372)
|++.+ -.|++++.+|.|.|+..- ..++..++.+.+..++--|.+ | |.. .. ||++++..-.. ...+.
T Consensus 48 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi~~--A---~~~----~~-Pvl~i~g~~~~~~~~~~~ 116 (557)
T PRK08199 48 RVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGVHT--A---FQD----ST-PMILFVGQVARDFREREA 116 (557)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHH--H---hhc----CC-CEEEEecCCccccCCCCc
Confidence 45544 489999999999999844 445555778888777666653 2 222 25 99887432211 11222
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeccccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYRL 215 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l~r~ 215 (372)
.+..+...+++.+-.+... ..++.++...++.|++ . ++||||..|.-+...
T Consensus 117 ~q~~d~~~l~~~~tk~~~~-v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~~~ 172 (557)
T PRK08199 117 FQEIDYRRMFGPMAKWVAE-IDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLSE 172 (557)
T ss_pred ccccCHHHhhhhhhceeee-cCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHhhC
Confidence 3333445788887776444 3788888888877776 2 689999999876543
No 66
>PRK08322 acetolactate synthase; Reviewed
Probab=95.77 E-value=0.67 Score=48.62 Aligned_cols=118 Identities=12% Similarity=0.048 Sum_probs=77.5
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCC-
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH- 163 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~- 163 (372)
=+++.+ ..|++++.+|.|.|+. |...++..+..+.+..++--|.+ | |.. .. ||++++..-....-+.
T Consensus 39 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~~--A---~~~----~~-Pll~i~g~~~~~~~~~~ 107 (547)
T PRK08322 39 IKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAY--A---QLG----GM-PMVAITGQKPIKRSKQG 107 (547)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHHH--H---hhc----CC-CEEEEeccccccccCCC
Confidence 355554 4999999999999998 54445555677877777666653 2 222 25 9888742111111111
Q ss_pred CCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeccccccc
Q 017410 164 YHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYRL 215 (372)
Q Consensus 164 ~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l~r~ 215 (372)
.|+ .+..++++.+-.+ .....+++++..+++.|++. ++||||-.|..+...
T Consensus 108 ~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~ 164 (547)
T PRK08322 108 SFQIVDVVAMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIAAE 164 (547)
T ss_pred ccccccHHHHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhhhC
Confidence 232 2345788887764 66778888888888887762 689999998876543
No 67
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.73 E-value=0.22 Score=44.00 Aligned_cols=113 Identities=16% Similarity=0.065 Sum_probs=74.5
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--CCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~G~ 163 (372)
+++. .-.|+++..+|-|.|+. |...++..+..+-+..+.--+.+. |.. .. ||++++....... .+.
T Consensus 40 ~~v~-~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~A-----~~~----~~-Pvl~I~g~~~~~~~~~~~ 108 (164)
T cd07039 40 EFIQ-VRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDA-----KRD----RA-PVLAIAGQVPTDELGTDY 108 (164)
T ss_pred eEEE-eCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH-----Hhc----CC-CEEEEecCCcccccCCCC
Confidence 4443 45999999999999998 544455556777777776666532 212 25 9888753222211 122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW 211 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~ 211 (372)
.|......+++.+-.+ ...+.++.++...++.|++ .++||||-.|.-
T Consensus 109 ~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 109 FQEVDLLALFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred CcccCHHHHHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 2223455788888876 5566788888888888775 379999966654
No 68
>PRK07586 hypothetical protein; Validated
Probab=95.50 E-value=1.1 Score=46.56 Aligned_cols=199 Identities=17% Similarity=0.074 Sum_probs=107.4
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--CCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~G~ 163 (372)
|++.+ -.|++++.+|.|.|+. |...++..++.+.+..+.--+.+ | |.. .. ||++++..-.... .+.
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~--A---~~~----~~-Pvl~i~G~~~~~~~~~~~ 109 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANLHN--A---RRA----RT-PIVNIVGDHATYHRKYDA 109 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHHH--H---Hhc----CC-CEEEEecCCchhccCCCc
Confidence 55554 4999999999999997 54445545677877666555543 2 212 25 9988743222111 122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeccccccccccc--CCCC-CccccCCc----
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYRLSVEE--VPED-DYMLPLSE---- 231 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l~r~~~~~--v~~~-~~~~~~Gk---- 231 (372)
++......+++.+-.+ .....++.++...++.|++ . ++||||-.|.-+.....+. .+.. ........
T Consensus 110 ~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (514)
T PRK07586 110 PLTSDIEALARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVE 188 (514)
T ss_pred ccccchhhhhccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHH
Confidence 2222344677877544 5556777777777777665 3 6999998888654322110 0000 00000000
Q ss_pred --eEEeee-CCcEEEEEeChhHHHHHHHHHHHHhc-CCceeE--Ee-----ecccC-----CCCHHHHHHHHhcCCeEEE
Q 017410 232 --AEVIRE-GSDITLVGWGAQLSIMEQACLDAEKE-GISCEL--ID-----LKTLI-----PWDKETVEASVRKTGRLLI 295 (372)
Q Consensus 232 --~~v~~~-g~di~ii~~G~~~~~a~~Aa~~L~~~-Gi~v~v--i~-----~~~i~-----P~d~~~l~~~~~~~~~viv 295 (372)
.+.+.+ .+-++|++.|.....+.++..+|.+. |+.+-. +. -+-+- |.-.+...+.++..+.|++
T Consensus 189 ~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~ 268 (514)
T PRK07586 189 AAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVL 268 (514)
T ss_pred HHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEE
Confidence 011222 34577777776655565666655443 766532 10 11122 2212334556777777777
Q ss_pred Ec
Q 017410 296 SH 297 (372)
Q Consensus 296 vE 297 (372)
+-
T Consensus 269 vG 270 (514)
T PRK07586 269 VG 270 (514)
T ss_pred EC
Confidence 65
No 69
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=95.48 E-value=0.092 Score=52.45 Aligned_cols=116 Identities=20% Similarity=0.213 Sum_probs=71.9
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC-CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g-~~G~ 163 (372)
+++-+- +|..++++|+|+.+. |.+|++.++- +.+..+.+.+. +++. .-.... |++++ +.=|--| .+-+
T Consensus 28 ~~i~~~-~E~~av~iaaG~~latG~~~~v~mQn-SGlGn~vN~l~-SL~~-----~~~y~i-P~l~~i~~RG~~g~~dep 98 (361)
T TIGR03297 28 RHVIAA-NEGAAVGLAAGAYLATGKRAAVYMQN-SGLGNAVNPLT-SLAD-----TEVYDI-PLLLIVGWRGEPGVHDEP 98 (361)
T ss_pred eEEecC-CchHHHHHHHHHHHhcCCccEEEEec-CchhhhhhHHH-hhcc-----ccccCc-CeeEEEecCCCCCCCCCc
Confidence 555544 899999999999999 9999999644 45566666653 2310 011245 77665 4444334 4556
Q ss_pred CCC-hh--HHHHHcC--CCCcEEEeeCCHHHHHHHHHHhH----hCCCcEEEEeccccc
Q 017410 164 YHS-QS--PEAFFCH--VPGLKVVIPRSPRQAKGLLLSCI----RDPNPVVFFEPKWLY 213 (372)
Q Consensus 164 ~Hs-~~--d~a~l~~--iP~l~V~~Psd~~e~~~~l~~a~----~~~~Pv~ir~p~~l~ 213 (372)
+|. +- -..+|.. ||.. +.|.+..|....+..++ +.+.|+.++.+++..
T Consensus 99 qh~~~G~~t~~lL~~~~i~~~--~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 99 QHVKQGRITLSLLDALEIPWE--VLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred hhhHHhHHHHHHHHHcCCCEE--ECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 673 22 2356654 5533 22456666655555544 568999999888754
No 70
>PRK12474 hypothetical protein; Provisional
Probab=95.34 E-value=2.6 Score=44.02 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=75.7
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC-CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH-GGHY 164 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~-~G~~ 164 (372)
|++.+- .|+++..+|-|.|+. |...++..++.+.+..++--+.+ | |.. .. ||++++....... +...
T Consensus 45 ~~i~~r-hE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl~~--A---~~d----~~-Pvl~i~G~~~~~~~~~~~ 113 (518)
T PRK12474 45 RPVLCL-FEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANLHN--A---RRA----AS-PIVNIVGDHAVEHLQYDA 113 (518)
T ss_pred eEEEec-chHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHHHH--H---hhc----CC-CEEEEeccCchhhcCCCC
Confidence 666654 999999999999987 65555555788877666555543 2 222 25 9887743222111 1112
Q ss_pred CCh-hHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 165 HSQ-SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 165 Hs~-~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
|++ ...++++.+-.+ .....++.++..+++.|++ ..+||||-.|.-+.
T Consensus 114 ~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~ 167 (518)
T PRK12474 114 PLTSDIDGFARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVA 167 (518)
T ss_pred ccccCHHHhhhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhh
Confidence 332 344788877655 4467889999988888885 26999999988764
No 71
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=95.31 E-value=0.37 Score=50.53 Aligned_cols=117 Identities=11% Similarity=0.040 Sum_probs=77.8
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC-C-CCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-G-HGG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~-g-~~G 162 (372)
=|++.+- .|+++..+|-|.|+. |...++..++.+.+..++.-+.+ |+. . .. ||++++..... . ..+
T Consensus 37 i~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~~--A~~---~----~~-Pvl~I~G~~~~~~~~~~ 105 (539)
T TIGR02418 37 IELIVVR-HEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLAT--ANS---E----GD-PVVAIGGQVKRADLLKL 105 (539)
T ss_pred CCEEEeC-cHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHHH--Hhh---c----CC-CEEEEeCCCcccccccC
Confidence 3666665 999999999999987 55556556788888777666653 322 2 25 98887431111 1 123
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEecccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYR 214 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l~r 214 (372)
.+|.....++++.+-.+ .....++.++...++.|++ . ++||||-.|..+..
T Consensus 106 ~~q~~d~~~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~~ 161 (539)
T TIGR02418 106 THQSMDNVALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVVD 161 (539)
T ss_pred cccccchhhhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHhh
Confidence 34444566888888765 4444678888777777765 2 68999998887543
No 72
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=95.31 E-value=3.1 Score=44.44 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=76.6
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--CCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~G~ 163 (372)
+++.+ -.|++++.+|.|.|+. |...++..+.++.+..+.--|.+ + + .. .. ||++++....... .+.
T Consensus 71 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~-A-~---~~----~~-PllvI~G~~~~~~~~~~~ 139 (612)
T PRK07789 71 RHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIAD-A-N---MD----SV-PVVAITGQVGRGLIGTDA 139 (612)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH-H-h---hc----CC-CEEEEecCCCccccCCCc
Confidence 55554 5999999999999987 65556656788887777666553 2 2 22 25 9888743222111 122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEecccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYR 214 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l~r 214 (372)
.+..+...+++.+-.+ .....++.++..+++.|++. ++||||-.|..+..
T Consensus 140 ~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~ 194 (612)
T PRK07789 140 FQEADIVGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQ 194 (612)
T ss_pred CcccchhhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccchhh
Confidence 2223344788887765 34457888888888888762 69999988887643
No 73
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=95.15 E-value=0.97 Score=47.89 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=75.3
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CCCCCC-CCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVGH-GGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G~~g~-~G~ 163 (372)
+++.+- .|++++.+|.|.|+. |.-.++..+..+.+..+.--|.+ | |.. .. ||++++. .+.... .+.
T Consensus 41 ~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~--A---~~~----~~-Pvl~I~g~~~~~~~~~~~ 109 (579)
T TIGR03457 41 RFIPVV-HEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAA--A---YWA----HT-PVVIVTPEAGTKTIGLGG 109 (579)
T ss_pred eEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHH--H---hhc----CC-CEEEEeCCCccccCCCCC
Confidence 556554 999999999999987 65556655788887777665543 2 222 25 9888742 221111 122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeccccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRL 215 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~ 215 (372)
++......+++.+-.+ .....++.++...++.|++ .++||||-.|.-+...
T Consensus 110 ~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~~ 164 (579)
T TIGR03457 110 FQEADQLPMFQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYFYG 164 (579)
T ss_pred CcccchhhhhhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchhhh
Confidence 2222345788887665 4445677777777777665 4799999988866443
No 74
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=95.10 E-value=1.7 Score=45.43 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=73.1
Q ss_pred ceEecchhHHHHHHHHHHHHhcCCee-EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--CCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~p-i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~G~ 163 (372)
+|+ .--.|++++.+|.|.|+..-+| ++..+..+.+..++.-|.+ | |.. .. ||++++..-.... .+.
T Consensus 50 ~~i-~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~--A---~~~----~~-Pvl~i~g~~~~~~~~~~~ 118 (530)
T PRK07092 50 RYV-LGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFT--A---FKN----HT-PLVITAGQQARSILPFEP 118 (530)
T ss_pred CEE-EEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHH--H---hhc----CC-CEEEEecCCcccccCccc
Confidence 666 4459999999999999974444 4444455656666655543 2 222 25 9887743222211 122
Q ss_pred C-CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeccccc
Q 017410 164 Y-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (372)
Q Consensus 164 ~-Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l~ 213 (372)
+ |......+++.+-.+.... .+++++.+.++.|++ . +|||||-.|..+.
T Consensus 119 ~~~~~d~~~l~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~~ 173 (530)
T PRK07092 119 FLAAVQAAELPKPYVKWSIEP-ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDDW 173 (530)
T ss_pred hhcccCHHHhhcccccceeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHHh
Confidence 2 2223457888888775544 778888888887776 2 5899998887654
No 75
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.01 E-value=0.25 Score=43.45 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=62.5
Q ss_pred chhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEe-CCCCCCCCCCCCC-hh-
Q 017410 92 PLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVGHGGHYHS-QS- 168 (372)
Q Consensus 92 GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~-~~G~~g~~G~~Hs-~~- 168 (372)
.-.|..++++|+|..+.|.+|.+.+ -.+.+..+..-+.. +. + .. .. ||+++. .-|..+.....|. +.
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~-~~sG~gn~~~~l~~-a~-~--~~----~~-Pvl~i~g~rg~~~~~~~~q~~~g~ 109 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILM-QSSGLGNSINALAS-LN-K--TY----GI-PLPILASWRGVYKEKIPAQIPMGR 109 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEE-eCCcHHHHHHHHHH-HH-H--cC----CC-CEEEEEeccCCCCCCCccccchhh
Confidence 5588999999999999999998885 33445555555542 21 0 11 35 888773 3333222211121 11
Q ss_pred -HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeccc
Q 017410 169 -PEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW 211 (372)
Q Consensus 169 -d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~ 211 (372)
....|..+ ++......+++|+ ..++.|++ .++|++|+.++.
T Consensus 110 ~~~~~l~~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 110 ATPKLLDTL-GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred hhHHHHHHc-CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 11222221 2235555667787 77777665 479999987764
No 76
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=94.98 E-value=0.62 Score=49.28 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=76.8
Q ss_pred CCceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CC
Q 017410 85 KSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HG 161 (372)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~ 161 (372)
+-+++.+ ..|++++.+|.|.|+. |...++..++.+-+..++--|.+ | |.. .. ||++++..-... ..
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl~~--A---~~~----~~-Pvl~ItG~~~~~~~~~ 121 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGLAD--A---MID----SL-PLVVFTGQVATSVIGS 121 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH--H---hhc----CC-CEEEEeccCCccccCC
Confidence 4678866 8999999999999987 54455555778887777666653 2 222 25 998874211111 11
Q ss_pred CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEecccc
Q 017410 162 GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWL 212 (372)
Q Consensus 162 G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l 212 (372)
+..+..+..++++.+-.+ .....++.++..+++.|++ . ++||||-.|..+
T Consensus 122 ~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 122 DAFQEADIMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM 176 (571)
T ss_pred CCccccchhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChhH
Confidence 222223455788888776 3455677788788887776 2 599999888765
No 77
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.93 E-value=0.57 Score=49.77 Aligned_cols=116 Identities=17% Similarity=0.100 Sum_probs=75.0
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCC--C
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG--G 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~--G 162 (372)
=+++.+ -.|++++.+|-|.|+. |...++..++.+.+..+..-|.+ | |.. .. ||++++........ +
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl~~--A---~~~----~~-Pvl~i~G~~~~~~~~~~ 128 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIAT--A---YMD----SI-PMVVISGQVPTAAIGQD 128 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH--H---hhc----CC-CEEEEecCCCccccCCC
Confidence 366666 5999999999999987 55556666788887777666543 2 222 25 99887432222111 1
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l~ 213 (372)
..+......+++.+-.+ .....++.++...++.|++ . ++||||-.|.-+.
T Consensus 129 ~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 183 (587)
T PRK06965 129 AFQECDTVGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDVS 183 (587)
T ss_pred CcccccHHHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhhh
Confidence 12222334788888766 4445677777777776665 3 6999998888653
No 78
>PRK07524 hypothetical protein; Provisional
Probab=94.88 E-value=0.63 Score=48.72 Aligned_cols=115 Identities=21% Similarity=0.220 Sum_probs=77.4
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCC---CCCC-
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA---VGHG- 161 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~---~g~~- 161 (372)
|++.+- .|++++.+|-|.|+. |...++..+.++.+..+.--|.+ | |.. .. ||++++..-. .+.+
T Consensus 41 ~~i~~~-hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~~--A---~~~----~~-Pvl~i~G~~~~~~~~~~~ 109 (535)
T PRK07524 41 RHVTPR-HEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAMGQ--A---YAD----SI-PMLVISSVNRRASLGKGR 109 (535)
T ss_pred cEEEec-cHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH--H---Hhc----CC-CEEEEeCCCChhhcCCCC
Confidence 555554 999999999999987 54446655788887777666653 2 222 25 9888742111 1221
Q ss_pred CCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 162 GHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 162 G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
+..|+ .+...+++.+-.. .....++.++...++.|++ .++||||-.|+-+.
T Consensus 110 ~~~~~~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (535)
T PRK07524 110 GKLHELPDQRAMVAGVAAF-SHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVL 166 (535)
T ss_pred ccccccccHHHHhhhhcee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHH
Confidence 23454 2455788887765 5677788888888888775 26999999887654
No 79
>PRK08611 pyruvate oxidase; Provisional
Probab=94.85 E-value=0.83 Score=48.39 Aligned_cols=117 Identities=13% Similarity=0.015 Sum_probs=76.4
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G~ 163 (372)
|++. ...|++++.+|.|.|+. |...++..++++.+..++--+.+ | |.. .. ||++++..-... ..+.
T Consensus 45 ~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gla~--A---~~~----~~-Pvl~ItG~~~~~~~~~~~ 113 (576)
T PRK08611 45 KFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGLYD--A---KMD----HV-PVLALAGQVTSDLLGTDF 113 (576)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHHHH--H---hhc----CC-CEEEEecCCcccccCCCC
Confidence 5655 56999999999999987 54445555678887777666653 2 222 25 988874321111 1222
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeccccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRL 215 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~ 215 (372)
.|..+...+++.+-.+ .....++.++...++.|++ .++||||-.|..+...
T Consensus 114 ~q~~d~~~l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv~~~ 168 (576)
T PRK08611 114 FQEVNLEKMFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDLPAQ 168 (576)
T ss_pred ccccCHHHHhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhhhhc
Confidence 3323345788887665 4456677788777777664 4799999998876443
No 80
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.75 E-value=3.1 Score=43.89 Aligned_cols=116 Identities=13% Similarity=0.097 Sum_probs=75.1
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G 162 (372)
=+++.+ -.|++++.+|-|.|+. |...++..++.+.+..+..-|.+ | |.. .. ||++++...... ..+
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl~~--A---~~~----~~-Pvl~i~G~~~~~~~~~~ 114 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGIAT--A---YMD----SV-PIVALTGQVPRSMIGND 114 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHH--H---hhc----CC-CEEEEeccCCccccCCC
Confidence 466666 5999999999999987 65556666788888777666653 2 222 25 988874221111 112
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
..+.....++++.+-.+. +.-.++.++..+++.|++ .++||||-.|.-+.
T Consensus 115 ~~q~~d~~~~~~~itk~s-~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 169 (561)
T PRK06048 115 AFQEADITGITMPITKHN-YLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVT 169 (561)
T ss_pred CccccchhhhccCcceEE-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhhh
Confidence 222223346777765543 334678888888888776 26999998887653
No 81
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.73 E-value=0.41 Score=42.32 Aligned_cols=111 Identities=20% Similarity=0.158 Sum_probs=65.7
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G~ 163 (372)
+|+.+- .|++++.+|-|.|+. |...++..+..+.+..+.--+.+ +. .. .. ||++++...... ..+.
T Consensus 37 ~~v~~r-hE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~-A~----~~----~~-Pvl~i~g~~~~~~~~~~~ 105 (162)
T cd07037 37 RLHVRV-DERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE-AY----YS----GV-PLLVLTADRPPELRGTGA 105 (162)
T ss_pred eEEecc-ChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH-HH----hc----CC-CEEEEECCCCHHhcCCCC
Confidence 555544 999999999999998 44445555677777666665553 21 11 25 998875433221 1222
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHH------HHHHHHHhHh----C-CCcEEEEec
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQ------AKGLLLSCIR----D-PNPVVFFEP 209 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e------~~~~l~~a~~----~-~~Pv~ir~p 209 (372)
.+.....++++.+-.+ .....++++ +..+++.|++ . ++||+|-.|
T Consensus 106 ~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 106 NQTIDQVGLFGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred CcccchhhhccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 2223445788877665 333344444 5555555554 3 699999443
No 82
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.53 E-value=0.74 Score=48.62 Aligned_cols=118 Identities=19% Similarity=0.125 Sum_probs=79.1
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~ 164 (372)
=||+-+= -||++..+|.|.|+. |.--+|..+.++.+..+..-|.+ |+++ .. ||++++..=....-|..
T Consensus 40 i~~I~~R-HEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgla~--A~~d-------~~-Pll~itGqv~~~~~g~~ 108 (550)
T COG0028 40 IRHILVR-HEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGLAD--AYMD-------SV-PLLAITGQVPTSLIGTD 108 (550)
T ss_pred CcEEEec-cHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHH--HHhc-------CC-CEEEEeCCccccccCcc
Confidence 3555554 899999999999997 66556666778887776665542 3222 25 98877421111122222
Q ss_pred CChh--HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeccccccc
Q 017410 165 HSQS--PEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYRL 215 (372)
Q Consensus 165 Hs~~--d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l~r~ 215 (372)
..|+ ..++++.+-.+ .+...+++|+-..++.|++. ++||+|-.|+-+...
T Consensus 109 afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~~ 165 (550)
T COG0028 109 AFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAA 165 (550)
T ss_pred hhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHhhc
Confidence 2233 44788887766 66778889999999988872 599999888876543
No 83
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=94.48 E-value=0.78 Score=48.29 Aligned_cols=115 Identities=15% Similarity=0.099 Sum_probs=76.3
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--CCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~G~ 163 (372)
|++.+- .|++++.+|.|.|+. |...++..++.+.+..++.-|.+ | |.. .. ||++++..-.... .+.
T Consensus 41 ~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~~--A---~~~----~~-Pvl~i~g~~~~~~~~~~~ 109 (558)
T TIGR00118 41 EHILVR-HEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIAT--A---YMD----SI-PMVVFTGQVPTSLIGSDA 109 (558)
T ss_pred eEEEeC-cHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH--H---Hhc----CC-CEEEEecCCCccccCCCC
Confidence 666665 999999999999987 65556666788888777666653 2 222 25 9888743222211 122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l~ 213 (372)
.+..+...+++.+-.+.. ...++.++..+++.|++. ++||||-.|..+.
T Consensus 110 ~q~~d~~~~~~~~tk~~~-~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv~ 163 (558)
T TIGR00118 110 FQEADILGITMPITKHSF-QVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVT 163 (558)
T ss_pred CcccChhhhhcCccceeE-EeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhhh
Confidence 222234478888776644 446788888888888863 6899998887653
No 84
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.43 E-value=1.1 Score=47.80 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=75.3
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--CC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~G 162 (372)
=||+.+ -.|++++.+|.|.|+. |...++..+.++.+..++.-+.+ + +.+ .. ||++++....... .+
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~~-A-~~d-------~~-Pvl~i~G~~~~~~~~~~ 129 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIAT-A-QMD-------SV-PMVVITGQVPRPAIGTD 129 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-H-Hhc-------CC-CEEEEecCCCccccCCC
Confidence 367777 5999999999999987 55555555778887666665542 2 221 25 9888743222211 12
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEecccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYR 214 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l~r 214 (372)
..+..+...+++.+-.+ .....+++++..+++.|++ . ++||||-.|.-+..
T Consensus 130 ~~Qe~d~~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv~~ 185 (616)
T PRK07418 130 AFQETDIFGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDVGQ 185 (616)
T ss_pred CcccccHHHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhhhh
Confidence 22222344677776544 3346788888888887776 3 59999998886543
No 85
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.37 E-value=0.86 Score=48.21 Aligned_cols=115 Identities=20% Similarity=0.129 Sum_probs=77.5
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G~ 163 (372)
||+.+ -.|+++..+|.|.|+. |...++..++.+.+..+.--|.+ | |.. .. ||++++...... ..+.
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~--A---~~~----~~-Pvl~i~G~~~~~~~~~~~ 112 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIAT--A---YMD----SI-PLVVLSGQVATSLIGYDA 112 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHH--H---hhc----CC-CEEEEECCCChhccCCCC
Confidence 55554 4899999999999987 76777776788887777665543 2 222 25 988874322211 1122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
.+..+...+++.+-.+ .....+++++...++.|++ .++||||-.|.-+.
T Consensus 113 ~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 166 (574)
T PRK07979 113 FQECDMVGISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL 166 (574)
T ss_pred CceecHHHHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 2323445788887665 4455688998888888886 26999998887653
No 86
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.20 E-value=1.3 Score=46.49 Aligned_cols=116 Identities=13% Similarity=0.041 Sum_probs=73.4
Q ss_pred ceEecchhHHHHHHHHHHHHhcCCee-EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--CCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~p-i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~G~ 163 (372)
+++. .-.|+++..+|.|.|+..-+| ++..+.++-+..++--+.+ |+ .. .. ||++++..-.... .+.
T Consensus 41 ~~v~-~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~~--A~---~~----~~-Pvl~i~G~~~~~~~~~~~ 109 (549)
T PRK06457 41 KYVQ-VRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLYD--AK---MD----HA-PVIALTGQVESDMIGHDY 109 (549)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHHH--HH---hc----CC-CEEEEecCCCccccCCCc
Confidence 4443 459999999999999985444 4445677777777666653 22 22 25 9888742111111 122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYR 214 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r 214 (372)
.+..+...+++.+-.+ .....++.++...++.|++ .++||+|-.|..+..
T Consensus 110 ~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~~ 163 (549)
T PRK06457 110 FQEVNLTKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDILR 163 (549)
T ss_pred ccccchhhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHhh
Confidence 2222355788887665 4556667777777776665 479999999887643
No 87
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.96 E-value=1.5 Score=46.58 Aligned_cols=115 Identities=13% Similarity=0.060 Sum_probs=73.6
Q ss_pred ceEecchhHHHHHHHHHHHHhcC-Cee-EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAMG-NRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G-~~p-i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G 162 (372)
|++.+ -.|++++.+|-|.|+.. .+| ++..++.+.+..+.--+.+ | |.. .. ||++++..-... ..+
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~--A---~~~----~~-Pvl~I~G~~~~~~~~~~ 111 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYS--A---SAD----SI-PILCITGQAPRARLHKE 111 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHH--H---hhc----CC-CEEEEecCCCccccCCC
Confidence 55554 48999999999999963 444 5445677777666665553 2 222 25 988874211111 112
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
..+..+..++++.+-.+.. ...++.++...++.|++ .+|||||-.|.-+.
T Consensus 112 ~~q~~D~~~~~~~vtk~~~-~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (588)
T TIGR01504 112 DFQAVDIAAIAKPVSKMAV-TVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQ 166 (588)
T ss_pred cccccCHHHHhhhhceEEE-EcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchh
Confidence 2222234578888776543 34578888888888886 25899998888764
No 88
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=93.92 E-value=1.1 Score=39.29 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=69.4
Q ss_pred ceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC---CCCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~---g~~G~ 163 (372)
||+. .-.|+++..+|.|.++.....++..+..+.+..+..-+.+. + .. .. ||++++..... +.+..
T Consensus 37 ~~i~-~rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl~~A--~---~~----~~-Pvl~i~g~~~~~~~~~~~~ 105 (162)
T cd07038 37 RWVG-NCNELNAGYAADGYARVKGLGALVTTYGVGELSALNGIAGA--Y---AE----HV-PVVHIVGAPSTKAQASGLL 105 (162)
T ss_pred eEEe-eCCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHHHHH--H---Hc----CC-CEEEEecCCCccccccccc
Confidence 4444 45999999999999998733344445667777777766642 1 11 25 98887432221 11111
Q ss_pred CC-----C-hhH-HHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEec
Q 017410 164 YH-----S-QSP-EAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEP 209 (372)
Q Consensus 164 ~H-----s-~~d-~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p 209 (372)
.| + ++| ..+++.+-.+ .....++.++..+++.|++ .++||||-.|
T Consensus 106 ~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 106 LHHTLGDGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred eeecccccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 12 1 223 5788887766 4444677888777777775 4789999555
No 89
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=93.82 E-value=1.8 Score=37.86 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=61.0
Q ss_pred CCceEecchhHHHHHHHHHHHHhcCCeeEEEecccccH--HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCC-
Q 017410 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYI--FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGH- 160 (372)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~--~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~- 160 (372)
|.+|+..| +=...+..|.|++++-.+|++.+ ..+-. +-.-+ +- -+...+ +. |++++ .-.+..+.
T Consensus 35 ~~~~~~~g-smG~~lp~AiGa~~a~~~~Vv~i-~GDG~f~m~~~e-l~-t~~~~~-------~~-~i~~vV~nN~~~g~~ 102 (157)
T cd02001 35 DGHFYMLG-SMGLAGSIGLGLALGLSRKVIVV-DGDGSLLMNPGV-LL-TAGEFT-------PL-NLILVVLDNRAYGST 102 (157)
T ss_pred CCCEEeec-chhhHHHHHHHHHhcCCCcEEEE-ECchHHHhcccH-HH-HHHHhc-------CC-CEEEEEEeCcccccc
Confidence 88998755 22334457888877644788775 55552 22222 21 122110 24 65554 23332221
Q ss_pred CC-CCCC-hhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 161 GG-HYHS-QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 161 ~G-~~Hs-~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+ .++. .-|. .+...+ |+.-+...++.|+...++++++.++|++|
T Consensus 103 ~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~vi 150 (157)
T cd02001 103 GGQPTPSSNVNLEAWAAAC-GYLVLSAPLLGGLGSEFAGLLATTGPTLL 150 (157)
T ss_pred CCcCCCCCCCCHHHHHHHC-CCceEEcCCHHHHHHHHHHHHhCCCCEEE
Confidence 11 1121 2244 333332 55556678999999999999999999998
No 90
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=93.81 E-value=1.7 Score=45.77 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=75.1
Q ss_pred CceEecchhHHHHHHHHHHHHhcCCee-EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~p-i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G 162 (372)
=|++. ...|++++.+|.|.|+..-+| ++..++.+.+..++.-|.+ |+ .. .. ||++++..-... ..+
T Consensus 52 i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl~~--A~---~~----~~-Pvl~i~G~~~~~~~~~~ 120 (564)
T PRK08155 52 IRHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIAD--AR---LD----SI-PLVCITGQVPASMIGTD 120 (564)
T ss_pred ceEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHHHH--HH---hc----CC-CEEEEeccCCcccccCC
Confidence 36676 559999999999999985455 4444778887777666653 22 22 25 988874211111 112
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l~ 213 (372)
..+.....++++.+-.+..- ..++.++...++.|++ . ++||||-.|..+.
T Consensus 121 ~~q~~d~~~~~~~~tk~~~~-v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv~ 175 (564)
T PRK08155 121 AFQEVDTYGISIPITKHNYL-VRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDVQ 175 (564)
T ss_pred CccccchhhhhhccceEEEE-cCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHH
Confidence 22222344788887766444 3578888888887776 2 5999998887653
No 91
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=93.78 E-value=1.2 Score=47.07 Aligned_cols=115 Identities=19% Similarity=0.166 Sum_probs=76.0
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCC-CCCC-CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY-GAVG-HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~-G~~g-~~G~ 163 (372)
||+.+- .|++++.+|.|.|+. |...++.+++.+.+..+..-|.+ | |.. .. ||++++.. .... ..+.
T Consensus 50 ~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gla~--A---~~~----~~-Pvl~i~G~~~~~~~~~~~ 118 (566)
T PRK07282 50 RHILAR-HEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIAD--A---MSD----SV-PLLVFTGQVARAGIGKDA 118 (566)
T ss_pred eEEEec-CHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH--H---hhc----CC-CEEEEecccccccCCCCC
Confidence 666655 999999999999987 66666666788888777666653 2 222 25 98887432 2111 1122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l~ 213 (372)
.+..+...+++.+-.+.. ...++.++..+++.|++. ++||||-.|.-+.
T Consensus 119 ~q~~d~~~~~~~itk~s~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 172 (566)
T PRK07282 119 FQEADIVGITMPITKYNY-QIRETADIPRIITEAVHIATTGRPGPVVIDLPKDVS 172 (566)
T ss_pred ccccChhchhcCCCceeE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhhh
Confidence 222334578888776644 446788888888877763 5999998887653
No 92
>PRK08617 acetolactate synthase; Reviewed
Probab=93.67 E-value=1.5 Score=46.08 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=75.9
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CCCCC-CCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVG-HGG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G~~g-~~G 162 (372)
=+++.+- .|+++..+|.|.|+. |...++..++++.+..++.-+.+ | |.. .. ||++++. ..... .-+
T Consensus 43 i~~i~~~-hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl~~--A---~~~----~~-PvlvisG~~~~~~~~~~ 111 (552)
T PRK08617 43 PELIVTR-HEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGLVT--A---TAE----GD-PVVAIGGQVKRADRLKR 111 (552)
T ss_pred CCEEEec-cHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHHHH--H---hhc----CC-CEEEEecCCcccccCCC
Confidence 4556554 999999999999998 44445555778887777666653 2 222 25 9887742 11111 112
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
.+|......+++.+-.+ .....++.++...++.|++ .++||||-.|..+.
T Consensus 112 ~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv~ 166 (552)
T PRK08617 112 THQSMDNVALFRPITKY-SAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDVV 166 (552)
T ss_pred Cccccchhhhhhhhcce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhhh
Confidence 33333445788888765 5555788888888887776 26899998887654
No 93
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.65 E-value=0.6 Score=49.44 Aligned_cols=116 Identities=17% Similarity=0.081 Sum_probs=76.4
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--CC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~G 162 (372)
=+|+.+- .|++++.+|-|.|+. |...++..++.+.+..+..-|.+ | |.. .. ||++++....... .+
T Consensus 53 i~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gla~--A---~~~----~~-Pvl~I~G~~~~~~~~~~ 121 (570)
T PRK06725 53 LKHILTR-HEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGLAD--A---YMD----SI-PLVVITGQVATPLIGKD 121 (570)
T ss_pred CcEEEec-CHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH--H---hhc----Cc-CEEEEecCCCcccccCC
Confidence 4666654 999999999999987 65556655788888777665543 2 222 25 9888742222111 12
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l~ 213 (372)
..+......+++.+-.+ .....+++++..+++.|++. ++||||-.|.-+.
T Consensus 122 ~~q~~d~~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 176 (570)
T PRK06725 122 GFQEADVVGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQ 176 (570)
T ss_pred CCcccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccchh
Confidence 22222334788887765 34456889998888888863 6999998887654
No 94
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.63 E-value=1.5 Score=46.30 Aligned_cols=116 Identities=15% Similarity=0.094 Sum_probs=75.9
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--CC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~G 162 (372)
=+++.+ -.|+++..+|-|.|+. |...++..++.+.+..+..-|.+ | |.. .. ||++++..-.... .+
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl~~--A---~~~----~~-Pvl~i~G~~~~~~~~~~ 111 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIAT--A---YMD----SI-PMVVLSGQVPSTLIGED 111 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH--H---Hhc----CC-CEEEEecCCCccccCCC
Confidence 355554 5999999999999987 54556556788887777666653 2 222 25 9888743222111 12
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l~ 213 (372)
.++..+...+++.+-.+ .....++.++..+++.|++. ++||||-.|..+.
T Consensus 112 ~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv~ 166 (574)
T PRK06466 112 AFQETDMVGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDMT 166 (574)
T ss_pred cccccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence 22223344788888776 55566788888888777752 6999999888753
No 95
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.44 E-value=0.87 Score=48.10 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=74.4
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G~ 163 (372)
|++.+ ..|++++.+|.|.|+. |.-.++..++.+.+..++.-|.+ |+. . .. ||++++..-... ..+.
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi~~--A~~---~----~~-Pvl~i~G~~~~~~~~~~~ 113 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGLIT--AYW---D----SS-PVIAITGQVPRSVMGKMA 113 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHHH--HHh---h----CC-CEEEEecCCCccccCCCC
Confidence 44444 4899999999999997 54445544788888777766653 221 1 25 988874221111 1122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
.+.....++++.+-.+..- ..++.++...++.|++ .++||||-.|.-+.
T Consensus 114 ~q~~d~~~i~~~~tk~~~~-v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 167 (572)
T PRK06456 114 FQEADAMGVFENVTKYVIG-IKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIF 167 (572)
T ss_pred ccccchhhhhhccceeEEE-eCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhHh
Confidence 2223345788888776444 4678888888887775 36999998887653
No 96
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.38 E-value=1.6 Score=46.58 Aligned_cols=116 Identities=14% Similarity=0.045 Sum_probs=76.4
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G 162 (372)
=||+.+ -.|++++.+|-|.|+. |...++..++.+.+..+.--|.+ |+ .. .. ||++++...... ..+
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gia~--A~---~~----~~-Pvl~i~G~~~~~~~~~~ 118 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPLQD--AL---MD----SI-PLVCITGQVPTHLIGSD 118 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhHHHHHHHH--Hh---hc----CC-CEEEEEcCCChhhcCCC
Confidence 466666 5999999999999976 66566666788887777665543 22 22 25 988874322211 112
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l~ 213 (372)
..+.....++++.+-.+ .....++.++..+++.|++. ++||||-.|.-+.
T Consensus 119 ~~q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 173 (595)
T PRK09107 119 AFQECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQ 173 (595)
T ss_pred CCcccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCChh
Confidence 22222334677776554 34467888888888888873 6999998887653
No 97
>PRK08266 hypothetical protein; Provisional
Probab=93.17 E-value=3.7 Score=43.03 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=75.4
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCC---CCCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA---VGHG 161 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~---~g~~ 161 (372)
=|++.+ ..|++++.+|.|.|+. |...++..+.++-+..++--+.+ +- .. .. ||++++..-. .+.+
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi~~-A~----~~----~~-Pvl~i~g~~~~~~~~~~ 112 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAALLT-AY----GC----NS-PVLCLTGQIPSALIGKG 112 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHH-HH----hh----CC-CEEEEecCCChhhccCC
Confidence 355555 4999999999999987 54445555788887777666653 22 22 25 9888743211 1222
Q ss_pred -CCCCCh-hHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 162 -GHYHSQ-SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 162 -G~~Hs~-~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
+.+|+. ....+++.+-.+ .....+++++...++.|++ .++||||-.|..+.
T Consensus 113 ~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv~ 170 (542)
T PRK08266 113 RGHLHEMPDQLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDVF 170 (542)
T ss_pred CCcceecccHhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhHh
Confidence 223432 345788888765 5556667787777777775 36999998887654
No 98
>PLN02470 acetolactate synthase
Probab=93.15 E-value=1.9 Score=45.75 Aligned_cols=115 Identities=14% Similarity=0.023 Sum_probs=76.4
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--CC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~G 162 (372)
=|++.+ -.|++++.+|.|.|+. |...++..++++.+..++--|.+ |+ .. .. ||++++....... .+
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia~--A~---~~----~~-Pvl~I~G~~~~~~~~~~ 120 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLAD--AL---LD----SV-PLVAITGQVPRRMIGTD 120 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH--HH---hc----CC-cEEEEecCCChhhcCCC
Confidence 356766 5999999999999987 65556656788888777666653 22 22 25 9888743222211 12
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEecccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWL 212 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l 212 (372)
..+......+++.+-.+. ....++.++..+++.|++. ++||||-.|.-+
T Consensus 121 ~~q~~d~~~l~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 121 AFQETPIVEVTRSITKHN-YLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred cCcccchhhhhhhheEEE-EEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCch
Confidence 222223447777766553 3356888998888888863 699999888765
No 99
>PRK07064 hypothetical protein; Provisional
Probab=92.82 E-value=1.4 Score=46.21 Aligned_cols=115 Identities=19% Similarity=0.120 Sum_probs=75.5
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCC---CCCC-
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA---VGHG- 161 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~---~g~~- 161 (372)
|++.+ ..|+++..+|.|.|+. |...++..++++.+..++.-|.+ | |.. .. ||++++..-. .+.+
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i~~--A---~~~----~~-Pvl~i~g~~~~~~~~~~~ 111 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGALVE--A---LTA----GT-PLLHITGQIETPYLDQDL 111 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHHHH--H---Hhc----CC-CEEEEeCCCCcccccCCC
Confidence 55444 4999999999999987 65556555788887777766653 2 222 25 9888742111 1222
Q ss_pred CCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeccccc
Q 017410 162 GHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (372)
Q Consensus 162 G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l~ 213 (372)
+..|+ .+...+++.+-.+ .....++.++..+++.|++ . ++||||-.|..+.
T Consensus 112 ~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv~ 168 (544)
T PRK07064 112 GYIHEAPDQLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDIQ 168 (544)
T ss_pred cccccccCHHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhHh
Confidence 22343 3566888888765 4445677887777777665 3 7999998887653
No 100
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.77 E-value=2.3 Score=44.96 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=76.0
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC-C-CCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-G-HGG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~-g-~~G 162 (372)
=|++.+ -.|++++.+|.|.|+. |...++..++.+.+..+.--+.+ | |.. .. ||++++..-.. . ..+
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gia~--A---~~~----~~-Pvl~i~G~~~~~~~~~~ 111 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGIAT--A---YMD----SI-PMVVLSGQVPSNLIGND 111 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHHHH--H---hhc----CC-CEEEEecCCCccccCCC
Confidence 356666 4999999999999987 66556666778877666665543 2 222 25 98877422111 1 122
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
..+..+..++++.+-.+ .....+++++...++.|++ .++||||-.|.-+.
T Consensus 112 ~~q~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (572)
T PRK08979 112 AFQECDMIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDCL 166 (572)
T ss_pred CCcccchhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhHh
Confidence 22323445788887665 4445578888888888876 36999998887653
No 101
>PLN02573 pyruvate decarboxylase
Probab=92.61 E-value=1.9 Score=45.76 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=70.5
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCC---CCCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA---VGHGG 162 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~---~g~~G 162 (372)
+|+. .-.|+++..+|-|.|+. | .+++..++.+-...+..-+.+ + |.. .. ||++++..-. .+.++
T Consensus 56 ~~i~-~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gla~--A---~~d----~~-Pvl~I~G~~~~~~~~~~~ 123 (578)
T PLN02573 56 NLIG-CCNELNAGYAADGYARARG-VGACVVTFTVGGLSVLNAIAG--A---YSE----NL-PVICIVGGPNSNDYGTNR 123 (578)
T ss_pred eEEE-eCCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHHHHHHHH--H---HHh----CC-CEEEEECCCChhhhhcCc
Confidence 3443 34899999999999987 7 777666788877666665543 2 222 25 9888742111 12233
Q ss_pred CCCCh-------hHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH----hCCCcEEEEecccccc
Q 017410 163 HYHSQ-------SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI----RDPNPVVFFEPKWLYR 214 (372)
Q Consensus 163 ~~Hs~-------~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~----~~~~Pv~ir~p~~l~r 214 (372)
..|+. ....+++.+-.+ .....++.++...++.|+ ..++||||-.|.-+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv~~ 185 (578)
T PLN02573 124 ILHHTIGLPDFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALKESKPVYISVSCNLAA 185 (578)
T ss_pred eeeeecCCCChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhhhc
Confidence 33321 234677776554 334455666655555555 4579999998887643
No 102
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=92.50 E-value=1.2 Score=46.74 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=75.6
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G~ 163 (372)
|++.+ ..|++++.+|.|.|+. |...++..++++.+..++--+.+ | |.. .. ||++++..-... ..+.
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~--A---~~~----~~-Pvl~i~g~~~~~~~~~~~ 108 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLAD--A---LLD----SV-PVVAITGQVSSPLIGTDA 108 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH--H---hhc----CC-CEEEEecCCCccccCCCC
Confidence 55555 5999999999999998 65556566788888777666653 2 222 25 988874322211 1122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
.+..+..++++.+-.+.... .++.++..+++.|++ .++||||-.|..+.
T Consensus 109 ~q~~d~~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 162 (548)
T PRK08978 109 FQEIDVLGLSLACTKHSFLV-QSLEELPEIMAEAFEIASSGRPGPVLVDIPKDIQ 162 (548)
T ss_pred CcccchhccccCceeeEEEE-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChhhh
Confidence 22223446888887764444 578888888888876 25999998887653
No 103
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=92.34 E-value=1.4 Score=46.30 Aligned_cols=116 Identities=13% Similarity=0.006 Sum_probs=74.7
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC----CC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG----HG 161 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g----~~ 161 (372)
|++.+- .|+++..+|-|.|+. |...++..+..+.+..+.--|.+ | |.. .. ||++++...... ..
T Consensus 42 ~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gia~--A---~~~----~~-Pvl~I~G~~~~~~~~~~~ 110 (554)
T TIGR03254 42 RYIGFR-HEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN--A---TTN----CF-PMIMISGSSERHIVDLQQ 110 (554)
T ss_pred cEEEeC-CHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHHHH--H---Hhc----CC-CEEEEEccCCccccccCC
Confidence 565554 999999999999987 55455555678877767665543 2 222 25 988874221111 11
Q ss_pred CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEecccccc
Q 017410 162 GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (372)
Q Consensus 162 G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~r 214 (372)
+.++.....++++.+-.+ .+...++.++...++.|++ .++||||-.|.-+..
T Consensus 111 ~~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~~ 167 (554)
T TIGR03254 111 GDYEEMDQLAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLG 167 (554)
T ss_pred CCcchhhHHHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHHhh
Confidence 222223455788887765 5566678888777777765 268999988876543
No 104
>PRK05858 hypothetical protein; Provisional
Probab=92.16 E-value=4.9 Score=42.20 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=76.0
Q ss_pred CCceEecchhHHHHHHHHHHHHhcCCee-EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--C
Q 017410 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--G 161 (372)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G~~p-i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~ 161 (372)
.=||+.+- .|++++.+|.|.|+..-+| ++..++.+-+..+.--|.+ + |.. .. ||++++....... .
T Consensus 42 ~i~~i~~r-hE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~~-A----~~~----~~-Pvl~i~g~~~~~~~~~ 110 (542)
T PRK05858 42 GIRLIDVR-HEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMAA-A----QFN----QS-PLVVLGGRAPALRWGM 110 (542)
T ss_pred CCCEEeec-cHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHHH-H----Hhc----CC-CEEEEeCCCCcccCCC
Confidence 34666665 9999999999999984444 4444677777666665553 2 212 25 9988753222211 2
Q ss_pred CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 162 GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 162 G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
+..+......+++.+-.+ .....++.++...++.|++ .++||||-.|..+.
T Consensus 111 ~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 166 (542)
T PRK05858 111 GSLQEIDHVPFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHA 166 (542)
T ss_pred CCCcccchhhhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhhh
Confidence 322323344688888775 5555778888888887775 26899998887654
No 105
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=92.14 E-value=3.7 Score=36.37 Aligned_cols=143 Identities=20% Similarity=0.190 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecch-hH-HHHHHHHHHHHhcC-CeeEEEeccccc-
Q 017410 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-CE-QGIVGFAIGLAAMG-NRAIAEIQFADY- 121 (372)
Q Consensus 46 ~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GI-aE-~~~vg~A~GlA~~G-~~pi~~i~~~~F- 121 (372)
+.+.|.+.+..| .++..|.+....+ ....+.-+. |.+|+..+. .= ...++.|.|++++. .++++.+ ..+.
T Consensus 7 ~~~~l~~~~~~~---~ii~~d~g~~~~~-~~~~~~~~~-~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i-~GDG~ 80 (178)
T cd02014 7 VAAELNKRAPDD---AIFTIDVGNVTVW-AARHLRMNG-KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIAL-SGDGG 80 (178)
T ss_pred HHHHHHhHCCCC---eEEEEcCcHHHHH-HHHhcccCC-CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEE-EcchH
Confidence 455566555433 2344454411111 122333444 778887643 22 22556777777653 3555554 4444
Q ss_pred -HHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC---------CCCCCC---ChhHH-HHHcCCCCcEEEeeCC
Q 017410 122 -IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG---------HGGHYH---SQSPE-AFFCHVPGLKVVIPRS 186 (372)
Q Consensus 122 -~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g---------~~G~~H---s~~d~-a~l~~iP~l~V~~Psd 186 (372)
++-..+ +. .+... ++ |++++ .-.+..+ .+...+ ..-|. .+..+. |+..+...+
T Consensus 81 f~~~~~e-l~-t~~~~--------~l-p~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~ 148 (178)
T cd02014 81 FAMLMGD-LI-TAVKY--------NL-PVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVED 148 (178)
T ss_pred HHhhHHH-HH-HHHHh--------CC-CcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCC
Confidence 333333 33 23332 24 55544 2232211 111111 11233 455554 778888899
Q ss_pred HHHHHHHHHHhHhCCCcEEE
Q 017410 187 PRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 187 ~~e~~~~l~~a~~~~~Pv~i 206 (372)
+.|++..++.+++.++|++|
T Consensus 149 ~~el~~~l~~a~~~~~p~li 168 (178)
T cd02014 149 PDELEAALDEALAADGPVVI 168 (178)
T ss_pred HHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999998
No 106
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.13 E-value=1.9 Score=45.52 Aligned_cols=115 Identities=17% Similarity=0.083 Sum_probs=76.5
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--CCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~G~ 163 (372)
+++.+ -.|++++.+|.|.|+. |...++..++++.+..+..-+.+ | |.. .. ||++++....... .+.
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gla~--A---~~~----~~-Pvl~i~G~~~~~~~~~~~ 111 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLAT--A---YMD----SI-PLVLISGQVPNSLIGTDA 111 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHHHH--H---hhc----CC-CEEEEecCCCccccCCCC
Confidence 55554 4999999999999987 55556666788888777666653 2 222 25 9888742211111 122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l~ 213 (372)
.+.....++++.+-.+ .....++.++..+++.|++. ++||||-.|.-+.
T Consensus 112 ~q~~d~~~~~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv~ 165 (563)
T PRK08527 112 FQEIDAVGISRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVT 165 (563)
T ss_pred Ccccchhhhhhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence 2222344788887665 44568899999999988862 5899998887653
No 107
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.04 E-value=1.9 Score=45.62 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=75.3
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC--CCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~--~G~ 163 (372)
+++.+ -.|++++.+|-|.|+. |...++..+..+.+..++--|.+ | |.. .. ||++++....... .+.
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~~--A---~~~----~~-Pvlvi~G~~~~~~~~~~~ 112 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIAT--A---YTD----SV-PLVILSGQVPSNLIGTDA 112 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHHH--H---hhc----CC-CEEEEecCCCccccCCCc
Confidence 56665 5999999999999987 55555555778887777666653 2 222 25 9888743222211 122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
.+..+...+++.+-.+ .....++.++...++.|++ .++||||-.|..+.
T Consensus 113 ~q~~d~~~l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (574)
T PRK06882 113 FQECDMLGISRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDMV 166 (574)
T ss_pred ccccchhhhhhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHHh
Confidence 2223345788877654 4556788888777777776 36999998888653
No 108
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.78 E-value=4 Score=43.40 Aligned_cols=116 Identities=13% Similarity=0.056 Sum_probs=74.6
Q ss_pred CceEecchhHHHHHHHHHHHHhcC-Cee-EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAMG-NRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HG 161 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G-~~p-i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~ 161 (372)
=|++.+ -.|++++.+|-|.|+.. -+| ++..++++.+..+.--+.+ | |.. .. ||++++..-... .-
T Consensus 43 i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~--A---~~~----~~-Pvl~I~G~~~~~~~~~ 111 (591)
T PRK11269 43 IRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYS--A---SAD----SI-PILCITGQAPRARLHK 111 (591)
T ss_pred CcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHH--H---hhc----CC-CEEEEecCCCccccCC
Confidence 367766 59999999999999875 444 4445678877666555542 2 222 25 988874322111 11
Q ss_pred CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeccccc
Q 017410 162 GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (372)
Q Consensus 162 G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l~ 213 (372)
+..+......+++.+-.+ .....++.++..+++.|++. +|||||-.|..+.
T Consensus 112 ~~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 167 (591)
T PRK11269 112 EDFQAVDIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQ 167 (591)
T ss_pred CcccccChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhhh
Confidence 222222345788887665 34457788888888888762 5899998887653
No 109
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=91.78 E-value=1.8 Score=45.72 Aligned_cols=118 Identities=12% Similarity=-0.008 Sum_probs=76.8
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC---C-
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG---H- 160 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g---~- 160 (372)
=|++.+- .|+++..+|.|.|+. |...++..+.++.+..+..-|.+ |+. . .. ||++++...... .
T Consensus 48 i~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~--A~~---~----~~-Pvl~I~G~~~~~~~~~~ 116 (569)
T PRK09259 48 IRYIGFR-HEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN--ATT---N----CF-PMIMISGSSEREIVDLQ 116 (569)
T ss_pred CCEEeeC-CHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH--HHh---c----CC-CEEEEEccCCccccccc
Confidence 3566554 999999999999998 55556666778887777666653 221 1 25 988874321111 1
Q ss_pred CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccccc
Q 017410 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYRL 215 (372)
Q Consensus 161 ~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~r~ 215 (372)
.+..+......+++.+-.+ .+...++.++...++.|++ .+|||||-.|..+...
T Consensus 117 ~~~~q~~d~~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~ 175 (569)
T PRK09259 117 QGDYEELDQLNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQ 175 (569)
T ss_pred CCCccccchhhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHHhhC
Confidence 1211112345788887766 4445678888888887776 2689999988876443
No 110
>PRK06154 hypothetical protein; Provisional
Probab=91.61 E-value=3.8 Score=43.31 Aligned_cols=153 Identities=16% Similarity=0.097 Sum_probs=89.2
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-C-Cee-
Q 017410 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-G-NRA- 112 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G-~~p- 112 (372)
+.+.++..+++.+.|.++ +-+.++.-+ + .. .++.+.+ - .=|++.+ -.|++++.+|.|.|+. | -+|
T Consensus 16 ~~~~~~~a~~l~~~L~~~---GV~~vFGip--~--~~--l~dal~~-~-~i~~i~~-rhE~~A~~mAdgyar~t~g~~~g 83 (565)
T PRK06154 16 EAKTMKVAEAVAEILKEE---GVELLFGFP--V--NE--LFDAAAA-A-GIRPVIA-RTERVAVHMADGYARATSGERVG 83 (565)
T ss_pred CcCcccHHHHHHHHHHHc---CCCEEEeCc--C--HH--HHHHHHh-c-CCeEEee-CcHHHHHHHHHHHHHhcCCCCCE
Confidence 444455556666655543 333333322 1 11 2444532 2 3456654 5999999999999986 3 344
Q ss_pred EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC---CCCCCCCChhHHHHHcCCCCcEEEeeCCHHH
Q 017410 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQ 189 (372)
Q Consensus 113 i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~---g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e 189 (372)
++..++.+.+..+.--+.+ | |.. .. ||++++..... +.++ .+. ...+++.+-.+ .....++.+
T Consensus 84 v~~~t~GPG~~N~~~gla~--A---~~~----~~-Pvl~i~G~~~~~~~~~~~-~~d--~~~~~~~vtk~-~~~v~~~~~ 149 (565)
T PRK06154 84 VFAVQYGPGAENAFGGVAQ--A---YGD----SV-PVLFLPTGYPRGSTDVAP-NFE--SLRNYRHITKW-CEQVTLPDE 149 (565)
T ss_pred EEEECCCccHHHHHHHHHH--H---hhc----CC-CEEEEeCCCCcccccCCC-Ccc--hhhhHhhccee-EEECCCHHH
Confidence 4445678887777665543 2 222 25 98887422111 1111 122 24677777654 456778888
Q ss_pred HHHHHHHhHh-----CCCcEEEEecccccc
Q 017410 190 AKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (372)
Q Consensus 190 ~~~~l~~a~~-----~~~Pv~ir~p~~l~r 214 (372)
+...++.|++ .++||||-.|.-+..
T Consensus 150 ~~~~i~~A~~~A~s~~~GPV~l~iP~Dv~~ 179 (565)
T PRK06154 150 VPELMRRAFTRLRNGRPGPVVLELPVDVLA 179 (565)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecchHHhh
Confidence 8877777775 369999988876543
No 111
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=91.30 E-value=2.5 Score=44.69 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=74.2
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC--CCCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGG 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~--g~~G 162 (372)
=+++.+- .|+++..+|.|.|+. |.-.++..+.++.+..++--|.+ | |.. .. ||++++..-.. ...+
T Consensus 50 i~~v~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~~--A---~~~----~~-Pvl~I~G~~~~~~~~~~ 118 (578)
T PRK06112 50 IRQIAYR-TENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPLAE--A---LKA----SV-PIVALVQDVNRDQTDRN 118 (578)
T ss_pred CcEEEec-cHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHHHH--H---hhc----CC-CEEEEecCCccccCCCC
Confidence 3556554 999999999999987 54444444667777666665553 2 222 25 98887421111 1112
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEecccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYR 214 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l~r 214 (372)
..+......+++.+-.+ .....+++++...++.|++ . ++||||-.|..+..
T Consensus 119 ~~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv~~ 174 (578)
T PRK06112 119 AFQELDHIALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLT 174 (578)
T ss_pred CccccChhhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhHhh
Confidence 22222345788888765 4455667777777777775 2 58999998887643
No 112
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=91.30 E-value=2.1 Score=37.70 Aligned_cols=110 Identities=14% Similarity=0.048 Sum_probs=63.1
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~ 158 (372)
|.+|+..+. +=...+++|.|++++. -++++++ ..+.. +-....+. .++.. ++ |++++ .-++..
T Consensus 38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i-~GDG~f~~~~~el~-ta~~~--------~l-pv~ivv~NN~~~~ 106 (172)
T cd02004 38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLV-EGDGAFGFSGMELE-TAVRY--------NL-PIVVVVGNNGGWY 106 (172)
T ss_pred CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEE-EcchhhcCCHHHHH-HHHHc--------CC-CEEEEEEECcccc
Confidence 788887653 2334566788888775 4677764 55553 22233332 23322 35 65554 322221
Q ss_pred --C--CC----CCC-----CChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 159 --G--HG----GHY-----HSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 159 --g--~~----G~~-----Hs~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
. .. +.. +...|. .+.++. |+..+...+..|++.+++.+...++|++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 167 (172)
T cd02004 107 QGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALI 167 (172)
T ss_pred cchhhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEE
Confidence 1 00 000 111233 344443 66777778999999999999998999998
No 113
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=91.04 E-value=2.1 Score=45.46 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=74.6
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G~ 163 (372)
+|+.+- .|++++.+|-|.|+. |.-.++.+++.+.+..++--|.+ | |.. .. ||++++..-... ..+.
T Consensus 40 ~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~~--A---~~~----~~-Pvl~I~G~~~~~~~~~~~ 108 (586)
T PRK06276 40 IHILTR-HEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGIAT--A---YAD----SS-PVIALTGQVPTKLIGNDA 108 (586)
T ss_pred cEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH--H---Hhc----CC-CEEEEeCCCCccccCCCC
Confidence 566655 999999999999987 65555555778887777666653 2 211 25 988874211111 1122
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l~ 213 (372)
.+.....++++.+-.+.. .-.++.++...++.|++. ++||||-.|.-+.
T Consensus 109 ~q~~d~~~l~~~~tk~s~-~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 162 (586)
T PRK06276 109 FQEIDALGIFMPITKHNF-QIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQ 162 (586)
T ss_pred CccccHhhHHhhhcceEE-ecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhHH
Confidence 222234578887766544 346678888888887763 6899998887654
No 114
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=90.78 E-value=2.8 Score=44.49 Aligned_cols=114 Identities=16% Similarity=0.075 Sum_probs=72.6
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCC--CC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG--GH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~--G~ 163 (372)
+++. ...|++++.+|.|.|+. |...++..++++.+..+..-|.+ |+ .. .. ||++++........ +.
T Consensus 53 ~~i~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~--A~---~~----~~-Pvl~I~G~~~~~~~~~~~ 121 (585)
T CHL00099 53 KHIL-VRHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIAT--AQ---MD----SV-PLLVITGQVGRAFIGTDA 121 (585)
T ss_pred eEEE-ecCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHHHH--Hh---hc----CC-CEEEEecCCCccccCCCC
Confidence 4565 45999999999999987 65556556778887777665542 22 22 25 98887432111111 22
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEecccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWL 212 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l 212 (372)
.+..+...+++.+-.+ .....+++++..+++.|++ .++||||-.|.-+
T Consensus 122 ~q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 122 FQEVDIFGITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred ccccchhhhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 2222233677766544 4455688888888888775 2689999888765
No 115
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=90.62 E-value=4.8 Score=42.85 Aligned_cols=116 Identities=13% Similarity=0.116 Sum_probs=72.4
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC---CCC
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHG 161 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~---g~~ 161 (372)
=+|+.+- .|++++.+|-|.|+. |...++..++.+.+..+..-|.+ | |.. .. ||++++..-.. +.+
T Consensus 43 i~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~--A---~~d----~v-Pvl~I~G~~~~~~~~~~ 111 (597)
T PRK08273 43 PEFVQAR-HEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGLYD--A---KLD----HV-PVVAIVGQQARAALGGH 111 (597)
T ss_pred CeEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH--H---Hhc----CC-CEEEEecCCchhhcCCC
Confidence 3555554 999999999999987 65556656788888777666642 2 222 25 98877421111 212
Q ss_pred CCCCChhHHHHHcCCC-CcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecccccc
Q 017410 162 GHYHSQSPEAFFCHVP-GLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYR 214 (372)
Q Consensus 162 G~~Hs~~d~a~l~~iP-~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r 214 (372)
. .+......+++.+- .+ .....++.++...++.|++ .++||||-.|.-+..
T Consensus 112 ~-~q~~d~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv~~ 167 (597)
T PRK08273 112 Y-QQEVDLQSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDVQE 167 (597)
T ss_pred C-CCccCHHHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcchhh
Confidence 2 12123346777754 33 3455666777666666654 579999999876543
No 116
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=90.61 E-value=3.3 Score=43.86 Aligned_cols=116 Identities=8% Similarity=-0.039 Sum_probs=71.2
Q ss_pred CceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCC-C-C
Q 017410 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH-G-G 162 (372)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~-~-G 162 (372)
=+|+.+- .|+++..+|-|.|+. |.-.++..++.+.+..+.--+.+ | |.. .. ||++++....... + +
T Consensus 39 i~~v~~r-hE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~--A---~~~----~~-Pvl~I~G~~~~~~~~~~ 107 (575)
T TIGR02720 39 IHYIQVR-HEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYD--A---KED----HV-PVLALVGQVPTTGMNMD 107 (575)
T ss_pred CcEEEec-cHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHH--H---hhc----CC-CEEEEecCCccccCCCC
Confidence 3555554 899999999999987 44455555788887777666653 2 222 25 9888743222211 1 2
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH----hCCCcEEEEeccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI----RDPNPVVFFEPKWLY 213 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~----~~~~Pv~ir~p~~l~ 213 (372)
..|.....++++.+-.+ .....+++++...++.|+ ..++||||-.|.-+.
T Consensus 108 ~~q~id~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 161 (575)
T TIGR02720 108 TFQEMNENPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFG 161 (575)
T ss_pred CcceechhhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcchh
Confidence 22222345777776544 234455666655555554 458999998887653
No 117
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=90.56 E-value=3.6 Score=43.42 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=71.1
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G~ 163 (372)
||+.+ ..|+++..+|-|.|+. |...++..++++.+..++.-|.+ | |.. .. ||++++...... ..+.
T Consensus 49 ~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i~~--A---~~~----~~-Pvl~IsG~~~~~~~~~~~ 117 (568)
T PRK07449 49 RLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAVIE--A---GLT----GV-PLIVLTADRPPELRDCGA 117 (568)
T ss_pred EEEee-cCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHHHH--H---hhc----CC-cEEEEECCCCHHHhcCCC
Confidence 55554 4999999999999987 54445555788888777776653 2 222 25 998874322211 2233
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHH-----HHHHHHHHhH---h-CCCcEEEEecccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPR-----QAKGLLLSCI---R-DPNPVVFFEPKWL 212 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~-----e~~~~l~~a~---~-~~~Pv~ir~p~~l 212 (372)
.|.....++++.+-...+-.|.... .+..+++.+. . .++||||-.|..+
T Consensus 118 ~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~Dv 175 (568)
T PRK07449 118 NQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFRE 175 (568)
T ss_pred CceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCCC
Confidence 3434456788877655566666521 1344555533 2 4799999888754
No 118
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.50 E-value=3.1 Score=44.16 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=74.5
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G~ 163 (372)
||+.+- .|++++.+|-|.|+. |.-.++..+..+.+..++--+.+ | |.. .. ||++++..-... ..+.
T Consensus 43 ~~i~~r-hE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~--A---~~~----~~-Pvl~I~G~~~~~~~~~~~ 111 (578)
T PRK06546 43 EWVHVR-HEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYD--A---HRS----GA-PVLAIASHIPSAQIGSGF 111 (578)
T ss_pred eEEEeC-cHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHH--H---Hhc----CC-CEEEEeCCCCccccCCCC
Confidence 456554 899999999999998 44445544566777666665543 2 222 25 988874322211 1233
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYR 214 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r 214 (372)
.|...+..+++.+-.+ .....+++++...++.|++ .++||+|-.|.-+..
T Consensus 112 ~Qe~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv~~ 165 (578)
T PRK06546 112 FQETHPDRLFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDIAD 165 (578)
T ss_pred ccccChhhhcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhhhh
Confidence 3323455788877654 5667778888877777765 479999988876543
No 119
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=90.25 E-value=6.1 Score=41.79 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=70.2
Q ss_pred ceEecchhHHHHHHHHHHHHhcCCeeEEE-ecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~pi~~-i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G~ 163 (372)
|++.+- .|+++..+|-|.|+..-+|-++ .+.++....+..-|.+ | |.. .. ||++++...... ..+.
T Consensus 43 ~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi~~--A---~~~----~~-Pvl~i~G~~~~~~~~~~~ 111 (574)
T PRK09124 43 EWMHTR-HEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFD--C---HRN----HV-PVLAIAAHIPSSEIGSGY 111 (574)
T ss_pred cEEEeC-cHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHHHH--H---hhc----CC-CEEEEecCCccccCCCCC
Confidence 455443 9999999999999984455443 3566766666555543 2 222 25 988874322221 1222
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYR 214 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r 214 (372)
++......+++.+-.+.. ...+++++...++.|++ .++||||-.|.-+..
T Consensus 112 ~Q~~d~~~l~~~itk~~~-~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv~~ 165 (574)
T PRK09124 112 FQETHPQELFRECSHYCE-LVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDVAL 165 (574)
T ss_pred ccccChhhhcccceeeeE-EeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhhhh
Confidence 222345678887765433 35677776665555554 579999988876543
No 120
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=89.99 E-value=6.6 Score=34.88 Aligned_cols=110 Identities=14% Similarity=0.017 Sum_probs=62.1
Q ss_pred CCceEecch--hHHHHHHHHHHHHhc-CCeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAM-GNRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG 159 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~-G~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g 159 (372)
|.+|+..+- +=-..+..|.|++++ .-+|++.+ ..+.. +-....+. .+... ++ |++++ .-.+..+
T Consensus 38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i-~GDG~f~m~~~eL~-ta~~~--------~l-~vi~vV~NN~~~g 106 (177)
T cd02010 38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAV-SGDGGFMMNSQELE-TAVRL--------KI-PLVVLIWNDNGYG 106 (177)
T ss_pred CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEE-EcchHHHhHHHHHH-HHHHH--------CC-CeEEEEEECCcch
Confidence 788887532 223345677787765 45677665 55552 22222222 13322 34 66655 2222221
Q ss_pred C--------CC-CCCC---hhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 160 H--------GG-HYHS---QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 160 ~--------~G-~~Hs---~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
. .+ ..+. .-|. .+.+.+ |.+-+...++.|++..++++++.++|.+|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 165 (177)
T cd02010 107 LIKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVI 165 (177)
T ss_pred HHHHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 0 01 0111 1133 344444 67778889999999999999999999999
No 121
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=89.91 E-value=2.5 Score=44.77 Aligned_cols=115 Identities=18% Similarity=0.134 Sum_probs=74.6
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCC----
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG---- 161 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~---- 161 (372)
||+.+= .|++++.+|-|.|+. |...++..+.++.+..+..-|.+ | |.. .. ||++++..-.....
T Consensus 52 ~~V~~r-hE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gla~--A---~~d----~~-Pvl~I~G~~~~~~~~~~~ 120 (569)
T PRK08327 52 EFVICP-HEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGVHN--A---ARS----RI-PVLVFAGRSPYTEEGELG 120 (569)
T ss_pred cEEecC-CHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHHHH--H---hhc----CC-CEEEEeccCCcccccccc
Confidence 666665 899999999999998 44445555678887777665542 2 222 25 98877422111111
Q ss_pred ---CCCC-Chh--HH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccccc
Q 017410 162 ---GHYH-SQS--PE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 162 ---G~~H-s~~--d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
-..| .|+ |. .+++.+-.+ .....++.++...++.|++ .++||||-.|.-+.
T Consensus 121 ~~~~~~~~~qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv~ 183 (569)
T PRK08327 121 SRNTRIHWTQEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREVL 183 (569)
T ss_pred ccccCcccchhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHHH
Confidence 1112 232 33 788877665 5567788888888887776 26899998887654
No 122
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=89.64 E-value=1.8 Score=39.66 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=50.1
Q ss_pred CCcEEEEEeChh-HHHHHHHHHHHHhc--CCceeEEeeccc--------CC--CCHHHHHHHHhcCCeEEEEcCCCCCCc
Q 017410 238 GSDITLVGWGAQ-LSIMEQACLDAEKE--GISCELIDLKTL--------IP--WDKETVEASVRKTGRLLISHEAPVTGG 304 (372)
Q Consensus 238 g~di~ii~~G~~-~~~a~~Aa~~L~~~--Gi~v~vi~~~~i--------~P--~d~~~l~~~~~~~~~vivvEe~~~~GG 304 (372)
..|+++.|.|.. +.+++.|++.|++. ++++++||+.-| .| |+.+.+.+...+.+.|++-=- |
T Consensus 34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFafH-----G 108 (203)
T PF09363_consen 34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFAFH-----G 108 (203)
T ss_dssp T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEEES-----S
T ss_pred CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEEcC-----C
Confidence 469999999975 68999999999998 899888887655 23 566778888878888776433 3
Q ss_pred HHHHHHHHHHHh
Q 017410 305 FGAEISASILER 316 (372)
Q Consensus 305 lg~~i~~~l~~~ 316 (372)
....|-..+..+
T Consensus 109 Yp~~i~~L~~~R 120 (203)
T PF09363_consen 109 YPWLIHRLLFGR 120 (203)
T ss_dssp EHHHHHHHTTTS
T ss_pred CHHHHHHHhcCC
Confidence 456666555554
No 123
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=89.01 E-value=0.91 Score=39.16 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=65.5
Q ss_pred eEecch-hHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCC
Q 017410 88 VFNTPL-CEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYH 165 (372)
Q Consensus 88 ~i~~GI-aE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~H 165 (372)
+.+++. .|...+|+++|+.++|.+|..-+ -.+.+....+.+- ++-.. ... |+.++ .+-|...++=.-+
T Consensus 43 i~~i~vtREEeg~GIcAGa~lAGkk~ailm-QnsGlGNsiNal~-SL~~t-------y~i-Pl~ml~ShRG~~~E~i~AQ 112 (172)
T COG4032 43 IPEIPVTREEEGVGICAGAYLAGKKPAILM-QNSGLGNSINALA-SLYVT-------YKI-PLLMLASHRGVLKEGIEAQ 112 (172)
T ss_pred cccccccchhcceeeehhhhhcCCCcEEEE-eccCcchHHHHHH-HHHHH-------hcc-chhhhhhccchhhcCCccc
Confidence 556554 79999999999999999999885 4445544433332 11111 124 55444 4555444321111
Q ss_pred -C-hh-HHHHHcCCCCcEEEeeCCHHHHHHHHHHh----HhCCCcEEEEecc
Q 017410 166 -S-QS-PEAFFCHVPGLKVVIPRSPRQAKGLLLSC----IRDPNPVVFFEPK 210 (372)
Q Consensus 166 -s-~~-d~a~l~~iP~l~V~~Psd~~e~~~~l~~a----~~~~~Pv~ir~p~ 210 (372)
- .- --.++.. -++.-+.|-.|+|+..++..+ +++..||.++.+-
T Consensus 113 VpmGr~~~kiLe~-~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 113 VPMGRALPKILEG-LELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred cccchhhHHHHhh-cCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 0 11 1123332 255677888888877776654 4568899986654
No 124
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=88.76 E-value=9.1 Score=40.22 Aligned_cols=116 Identities=17% Similarity=0.109 Sum_probs=71.2
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC---CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHGG 162 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~---g~~G 162 (372)
|++. .-.|+++.-+|-|.|+. |...++..++.+.+..+..-|.. |+ .. .. ||++++..-.. +.+.
T Consensus 40 ~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gia~--A~---~~----~~-Pvl~i~g~~~~~~~~~~~ 108 (535)
T TIGR03394 40 PLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAIAG--AY---AE----KS-PVVVISGAPGTTEGNAGL 108 (535)
T ss_pred eEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHHHH--Hh---hc----CC-CEEEEECCCCcccccCCc
Confidence 6666 45999999999999998 65666666777877776665542 22 22 25 98887432221 2222
Q ss_pred C-CCCh--h-H-HHHHcCCCCcEEEeeCCHHHH----HHHHHHhHhCCCcEEEEecccccc
Q 017410 163 H-YHSQ--S-P-EAFFCHVPGLKVVIPRSPRQA----KGLLLSCIRDPNPVVFFEPKWLYR 214 (372)
Q Consensus 163 ~-~Hs~--~-d-~a~l~~iP~l~V~~Psd~~e~----~~~l~~a~~~~~Pv~ir~p~~l~r 214 (372)
. +|+. - | ..+++.+-.+.. ...++.++ .++++.|...++||||-.|..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~vtk~~~-~v~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~Dv~~ 168 (535)
T TIGR03394 109 LLHHQGRTLDSQFQVFKEVTCDQA-VLDDPATAPAEIARVLGSARELSRPVYLEIPRDMVN 168 (535)
T ss_pred eeEeeccchHHHHHhhhhheEEEE-EeCChHHhHHHHHHHHHHHHHCCCCEEEEechhhcc
Confidence 2 2442 1 2 377777655433 23444444 455555555689999988887643
No 125
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=88.35 E-value=9.7 Score=39.95 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=73.5
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CCCCC--CCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVG--HGG 162 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G~~g--~~G 162 (372)
||+.+ -.|++++.+|-|.|+. | +.++..+..+.+..+.--+.+ |+ .. .. ||++++. ..... .+.
T Consensus 41 ~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~~gla~--A~---~d----~~-Pvl~I~G~~~~~~~~~~~ 108 (539)
T TIGR03393 41 CWVGC-ANELNAAYAADGYARCKG-AAALLTTFGVGELSAINGIAG--SY---AE----HL-PVIHIVGAPGTAAQQRGE 108 (539)
T ss_pred cEecc-CCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHhhHHHH--Hh---hc----cC-CEEEEECCCCcchhhcCc
Confidence 55544 4999999999999998 6 677665788887666665553 32 22 25 9888742 11110 000
Q ss_pred C-CCC------hhHHHHHcCCCCcE-EEeeCC-HHHHHHHHHHhHhCCCcEEEEeccccccc
Q 017410 163 H-YHS------QSPEAFFCHVPGLK-VVIPRS-PRQAKGLLLSCIRDPNPVVFFEPKWLYRL 215 (372)
Q Consensus 163 ~-~Hs------~~d~a~l~~iP~l~-V~~Psd-~~e~~~~l~~a~~~~~Pv~ir~p~~l~r~ 215 (372)
. +|. |+...+++.+-.+. ++.|.+ +.++.++++.|+..++||||-.|.-+...
T Consensus 109 ~~~~~~~~~~~q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv~~~ 170 (539)
T TIGR03393 109 LLHHTLGDGDFRHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDVAAK 170 (539)
T ss_pred eeeeecCCCchHHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccccCC
Confidence 1 111 22235555543322 224666 78889999999988899999988876543
No 126
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=87.92 E-value=12 Score=36.19 Aligned_cols=144 Identities=12% Similarity=0.063 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcC-CeeEEEecccc
Q 017410 42 LYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD 120 (372)
Q Consensus 42 ~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G-~~pi~~i~~~~ 120 (372)
.-.++.++|.++-...++. ++..|+| .+. ....+.+-+ .+.... ..++.+|.|++++. -++++.+ -++
T Consensus 18 il~al~~al~~l~~~~~~~-ivvsdiG--c~~-~~~~~~~~~----~~~~~~--G~alp~A~GaklA~Pd~~VV~i-~GD 86 (279)
T PRK11866 18 ILEALRKALAELGIPPENV-VVVSGIG--CSS-NLPEFLNTY----GIHGIH--GRVLPIATGVKWANPKLTVIGY-GGD 86 (279)
T ss_pred HHHHHHHHHHHhcCCCCCE-EEEECCc--hhh-hhhhhccCC----Cccccc--ccHHHHHHHHHHHCCCCcEEEE-ECC
Confidence 3466777776664444454 4446766 110 111121111 122221 45667888887763 4666664 555
Q ss_pred c--HHHHHHHHHHHHHhhhhhcCCCcccccEEEE--eC--CCCCCC--CCCC----------C-C----hhHHHHHc--C
Q 017410 121 Y--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--AP--YGAVGH--GGHY----------H-S----QSPEAFFC--H 175 (372)
Q Consensus 121 F--~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~--~G~~g~--~G~~----------H-s----~~d~a~l~--~ 175 (372)
. ++-.+..+.+ ++..+ . +++++ .- -|..+. ...+ . . .+...+.. .
T Consensus 87 G~~f~ig~~eL~t-A~rrn--------~-~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G 156 (279)
T PRK11866 87 GDGYGIGLGHLPH-AARRN--------V-DITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAG 156 (279)
T ss_pred hHHHHccHHHHHH-HHHHC--------c-CcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCC
Confidence 5 3555555554 33322 4 55544 21 222221 0010 0 0 02223333 4
Q ss_pred CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 176 VPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 176 iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+....+.++.|++.+++.|++.++|++|
T Consensus 157 ~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I 187 (279)
T PRK11866 157 ATFVARGFSGDVKHLKEIIKEAIKHKGFSFI 187 (279)
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHhCCCCEEE
Confidence 5556667779999999999999999999999
No 127
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=87.65 E-value=8.6 Score=46.04 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=69.3
Q ss_pred ceEecchhHHHHHHHHHHHHhcCCee-EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~p-i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G~ 163 (372)
|++ ....|+++.-+|.|.|+.--+| ++..+.++.+...+--+.+ +. .. .. ||++++..-... +-|.
T Consensus 341 ~~i-~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av~e-A~----~d----~v-PlLvItgd~p~~~~~~ga 409 (1655)
T PLN02980 341 TCI-ACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAVVE-AS----QD----FV-PLLLLTADRPPELQDAGA 409 (1655)
T ss_pred eEE-eccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHH-Hh----hc----CC-CEEEEeCCCCHHHhcCCC
Confidence 444 4569999999999999985555 4445677777666666653 22 22 25 998875322221 1233
Q ss_pred CCChhHHHHHcCCCCcEEEe--eCCH-------HHHHHHHHHhHhC-CCcEEEEecc
Q 017410 164 YHSQSPEAFFCHVPGLKVVI--PRSP-------RQAKGLLLSCIRD-PNPVVFFEPK 210 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~--Psd~-------~e~~~~l~~a~~~-~~Pv~ir~p~ 210 (372)
.+..+..++++.+-.+..-. |.+. ..+.++++.|... +|||+|-.|.
T Consensus 410 ~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 410 NQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred CcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 22234557888877765554 3341 3445555555554 6999998885
No 128
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=87.45 E-value=7.6 Score=34.36 Aligned_cols=110 Identities=19% Similarity=0.200 Sum_probs=60.1
Q ss_pred CCceE-ecchhHH-HHHHHHHHHHhcCCeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCC
Q 017410 85 KSRVF-NTPLCEQ-GIVGFAIGLAAMGNRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGH 160 (372)
Q Consensus 85 p~r~i-~~GIaE~-~~vg~A~GlA~~G~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~ 160 (372)
|.+|+ +.|..-. ..++.|.|++++--+|++++ ..+.. +-....+.. +. +.++ |++++ .-.+..+-
T Consensus 41 ~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i-~GDGsf~m~~~eL~t-a~--------~~~l-~v~ivVlNN~~~g~ 109 (175)
T cd02009 41 TVRVFANRGASGIDGTLSTALGIALATDKPTVLL-TGDLSFLHDLNGLLL-GK--------QEPL-NLTIVVINNNGGGI 109 (175)
T ss_pred CceEEecCCccchhhHHHHHHHHHhcCCCCEEEE-EehHHHHHhHHHHHh-cc--------ccCC-CeEEEEEECCCCch
Confidence 77887 4443322 34567777766545777775 55552 222222211 11 1235 65554 22222110
Q ss_pred -----C---CC-----C---CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 161 -----G---GH-----Y---HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 161 -----~---G~-----~---Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
. +. . +..+..++.+++ |+.-+...++.|++..++++++.++|++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 170 (175)
T cd02009 110 FSLLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVI 170 (175)
T ss_pred heeccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 00 0 011122444444 55667778999999999999999999998
No 129
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=87.25 E-value=12 Score=33.92 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=29.2
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.+ |+..+...++.|++.+++.+++.++|++|
T Consensus 145 ~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 179 (205)
T cd02003 145 ANARSL-GARVEKVKTIEELKAALAKAKASDRTTVI 179 (205)
T ss_pred HHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 344554 67777779999999999999999999998
No 130
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=86.94 E-value=13 Score=35.82 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=23.6
Q ss_pred EeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 182 VIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 182 ~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
....++.|++.+++.|++.++|++|
T Consensus 172 ~~v~~~~el~~al~~Al~~~Gp~lI 196 (277)
T PRK09628 172 ESVIDPQKLEKLLVKGFSHKGFSFF 196 (277)
T ss_pred EccCCHHHHHHHHHHHHhCCCCEEE
Confidence 5789999999999999999999999
No 131
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=86.87 E-value=9.9 Score=37.06 Aligned_cols=33 Identities=12% Similarity=-0.054 Sum_probs=30.6
Q ss_pred cCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 174 CHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 174 ~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
..+|-+....|.++.++...++.|++.++|.+|
T Consensus 170 ~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I 202 (300)
T PRK11864 170 HKVPYVATASIAYPEDFIRKLKKAKEIRGFKFI 202 (300)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 457788899999999999999999999999999
No 132
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=86.78 E-value=21 Score=31.92 Aligned_cols=144 Identities=17% Similarity=0.106 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHH-HhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEeccccc
Q 017410 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLAD-RFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADY 121 (372)
Q Consensus 43 ~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~-~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F 121 (372)
|+++.++|.+.+. ..+++ .|.+ .. ...+.. ...|.+|+..|- =...+..|.|++++--+|++++ -++.
T Consensus 1 ~~~~~~~l~~~l~--d~iiv--~d~G--~~---~~~~~~~~~~~~~~~~~gs-mG~~lpaAiGa~la~~~~Vv~i-~GDG 69 (181)
T TIGR03846 1 RIDAIRAIASYLE--DELVV--SNIG--VP---SKELYAIRDRPLNFYMLGS-MGLASSIGLGLALATDRTVIVI-DGDG 69 (181)
T ss_pred CHHHHHHHHHhCC--CCEEE--ecCC--Hh---HHHHHhhhcCCCCeeeccc-cccHHHHHHHHHHcCCCcEEEE-Ecch
Confidence 4567777777773 33433 4444 21 112222 122788887542 2223457777777646677765 5565
Q ss_pred H-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCC-----CCCChhHHHHHcCCCCcEEEe-eCCHHHHHHH
Q 017410 122 I-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGG-----HYHSQSPEAFFCHVPGLKVVI-PRSPRQAKGL 193 (372)
Q Consensus 122 ~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G-----~~Hs~~d~a~l~~iP~l~V~~-Psd~~e~~~~ 193 (372)
. +-....+. .++..+ .. |++++ .-.+.++.-+ ..+......+.+.. |+.-.. ..++.|+..+
T Consensus 70 ~f~m~~~el~-ta~~~~-------~~-pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~a 139 (181)
T TIGR03846 70 SLLMNLGVLP-TIAAES-------PK-NLILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDA 139 (181)
T ss_pred HHHhhhhHHH-HHHHhC-------CC-CeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHH
Confidence 3 22222222 222111 12 55544 2223222111 11111222344443 444444 7899999999
Q ss_pred HHHhHhCCCcEEEEe
Q 017410 194 LLSCIRDPNPVVFFE 208 (372)
Q Consensus 194 l~~a~~~~~Pv~ir~ 208 (372)
++ +++.++|++|-.
T Consensus 140 l~-a~~~~~p~li~v 153 (181)
T TIGR03846 140 LK-ALAMKGPTFIHV 153 (181)
T ss_pred HH-HHcCCCCEEEEE
Confidence 97 888899999843
No 133
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=85.53 E-value=9 Score=34.59 Aligned_cols=145 Identities=15% Similarity=0.076 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecch-hH-HHHHHHHHHHHhc-CCeeEEEeccccc
Q 017410 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-CE-QGIVGFAIGLAAM-GNRAIAEIQFADY 121 (372)
Q Consensus 45 a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GI-aE-~~~vg~A~GlA~~-G~~pi~~i~~~~F 121 (372)
.+.+.|.+.+.+| . ++..|.+....+. ...+.-.. |.+|+..+- .= -..+..|.|++++ .-++++++ ..+.
T Consensus 8 ~~~~~l~~~l~~~-~--ivv~d~G~~~~~~-~~~~~~~~-~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i-~GDG 81 (196)
T cd02013 8 QVLRELEKAMPED-A--IVSTDIGNICSVA-NSYLRFEK-PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAI-AGDG 81 (196)
T ss_pred HHHHHHHHHCCCC-E--EEEECCcHHHHHH-HHhcCcCC-CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEE-Ecch
Confidence 3556666666533 2 3344544111111 22233333 788886531 11 3356688887765 34666664 5555
Q ss_pred H-HHHHHHHHHHHHhhhhhcCCCcccccEEEEe-CCCCCCC--------CC-----CCCChhHH-HHHcCCCCcEEEeeC
Q 017410 122 I-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVGH--------GG-----HYHSQSPE-AFFCHVPGLKVVIPR 185 (372)
Q Consensus 122 ~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~-~~G~~g~--------~G-----~~Hs~~d~-a~l~~iP~l~V~~Ps 185 (372)
. +-....+.. +... ++ |++++. -.+..+. .+ ..+.--|. .+.+++ |+.-+.-.
T Consensus 82 ~f~m~~~eL~T-a~~~--------~l-pvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~ 150 (196)
T cd02013 82 AWGMSMMEIMT-AVRH--------KL-PVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVD 150 (196)
T ss_pred HHhccHHHHHH-HHHh--------CC-CeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEEC
Confidence 2 223333332 3322 35 666542 2222110 01 01111133 344444 66677888
Q ss_pred CHHHHHHHHHHhHh---CCCcEEE
Q 017410 186 SPRQAKGLLLSCIR---DPNPVVF 206 (372)
Q Consensus 186 d~~e~~~~l~~a~~---~~~Pv~i 206 (372)
++.|+..+++++++ .++|++|
T Consensus 151 ~~~el~~al~~a~~~~~~~~p~li 174 (196)
T cd02013 151 KPEDVGPALQKAIAMMAEGKTTVI 174 (196)
T ss_pred CHHHHHHHHHHHHhcCCCCCeEEE
Confidence 99999999999998 8999998
No 134
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=85.30 E-value=5.6 Score=40.51 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=67.7
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCC--CCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g--~~G~ 163 (372)
+++. ...|+++.-+|-|.|+. |...++..++++-...++.-+.+ + |.. .. ||++++..-... ..+.
T Consensus 40 ~~v~-~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~~--A---~~~----~~-Pvl~i~g~~~~~~~~~~~ 108 (432)
T TIGR00173 40 RVHV-HIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAVIE--A---SYS----GV-PLIVLTADRPPELRGCGA 108 (432)
T ss_pred EEEE-ecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHHHH--h---ccc----CC-cEEEEeCCCCHHHhCCCC
Confidence 4444 45999999999999998 65555556777877666655542 2 222 25 988874211111 1122
Q ss_pred CCChhHHHHHcCCCCcEEEe--eCC-------HHHHHHHHHHhHh-CCCcEEEEecccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVI--PRS-------PRQAKGLLLSCIR-DPNPVVFFEPKWL 212 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~--Psd-------~~e~~~~l~~a~~-~~~Pv~ir~p~~l 212 (372)
.+......+++.+-.+..-. |.+ +..+.++++.|.. .++||+|-.|..+
T Consensus 109 ~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 109 NQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred CcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 22233457788766554433 333 2334555555554 3699999888765
No 135
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=85.21 E-value=25 Score=30.77 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=28.2
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.... |+..+...++.|+++.++++.+.++|++|
T Consensus 140 ~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi 174 (178)
T cd02002 140 AIAKAF-GVEAERVETPEELDEALREALAEGGPALI 174 (178)
T ss_pred HHHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 344444 56667778899999999999999999998
No 136
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=84.33 E-value=3.8 Score=41.29 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=68.9
Q ss_pred EEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC---CeEEEEcCCCCCCcHH--H
Q 017410 233 EVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT---GRLLISHEAPVTGGFG--A 307 (372)
Q Consensus 233 ~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~---~~vivvEe~~~~GGlg--~ 307 (372)
.++.+|.+++++..|.--..-.+-++.. |.++.+++..+=.|+|.+.+.+.+++. +.|.++.....+|=+. .
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia~~~---g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIAERY---GAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHHHHh---CCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 4566788999999999887766666555 899999999999999999999999854 3444555444445442 3
Q ss_pred HHHHHHHHhccccCCCcEEEEeccCCCc
Q 017410 308 EISASILERCFLRLEAPVARVCGLDTPF 335 (372)
Q Consensus 308 ~i~~~l~~~~~~~l~~~v~~ig~~~~~~ 335 (372)
+|+..+.+.+...+-.-|..+|+.+..+
T Consensus 152 ~I~~~~k~~g~l~iVDaVsS~Gg~~~~v 179 (383)
T COG0075 152 EIAKAAKEHGALLIVDAVSSLGGEPLKV 179 (383)
T ss_pred HHHHHHHHcCCEEEEEecccCCCcccch
Confidence 6676776665211122355666666543
No 137
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=84.19 E-value=15 Score=32.66 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecch-h-HHHHHHHHHHHHhcC-CeeEEEecccccH
Q 017410 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFADYI 122 (372)
Q Consensus 46 ~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GI-a-E~~~vg~A~GlA~~G-~~pi~~i~~~~F~ 122 (372)
+.++|.+.+..| . ++..|.+....+. ...+.-.. |.+|+..+- . =-..+..|.|++++. -++++.+ ..+..
T Consensus 6 ~~~~l~~~l~~~--~-iiv~d~g~~~~~~-~~~~~~~~-~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i-~GDG~ 79 (186)
T cd02015 6 VIKELSELTPGD--A-IVTTDVGQHQMWA-AQYYRFKK-PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICI-DGDGS 79 (186)
T ss_pred HHHHHHhhCCCC--e-EEEeCCcHHHHHH-HHhcccCC-CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEE-EcccH
Confidence 455566655533 2 3344544100111 22222233 788887542 2 123566788887763 4566664 45542
Q ss_pred -HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC---------CC----CCCC-ChhHH-HHHcCCCCcEEEeeC
Q 017410 123 -FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG---------HG----GHYH-SQSPE-AFFCHVPGLKVVIPR 185 (372)
Q Consensus 123 -~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g---------~~----G~~H-s~~d~-a~l~~iP~l~V~~Ps 185 (372)
+-....+.. +... ++ |++++ .-.+..+ .+ +... ..-|. .+.+++ |+.-+...
T Consensus 80 f~~~~~eL~t-a~~~--------~l-pi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~ 148 (186)
T cd02015 80 FQMNIQELAT-AAQY--------NL-PVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVE 148 (186)
T ss_pred HhccHHHHHH-HHHh--------CC-CeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeC
Confidence 222222322 3322 35 66554 2222211 00 1111 11233 455554 66677778
Q ss_pred CHHHHHHHHHHhHhCCCcEEE
Q 017410 186 SPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 186 d~~e~~~~l~~a~~~~~Pv~i 206 (372)
++.|+.+.++.+++.++|++|
T Consensus 149 ~~~el~~al~~a~~~~~p~li 169 (186)
T cd02015 149 KPEELEAALKEALASDGPVLL 169 (186)
T ss_pred CHHHHHHHHHHHHhCCCCEEE
Confidence 899999999999999999999
No 138
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=83.42 E-value=25 Score=31.28 Aligned_cols=143 Identities=16% Similarity=0.085 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecccccH-
Q 017410 44 SAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYI- 122 (372)
Q Consensus 44 ~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~- 122 (372)
+++.+.|.+.+. ..+++ .|.+ ......-.+ ... |.+|+..|. =...+..|.|++++..++++++ .++..
T Consensus 2 ~~~~~~l~~~~~--~~~vv--~d~G--~~~~~~~~~-~~~-~~~~~~~g~-mG~~lp~AiGaala~~~~vv~i-~GDG~f 71 (179)
T cd03372 2 RDAIKTLIADLK--DELVV--SNIG--FPSKELYAA-GDR-PLNFYMLGS-MGLASSIGLGLALAQPRKVIVI-DGDGSL 71 (179)
T ss_pred HHHHHHHHHhCC--CCeEE--eCCC--HhHHHHHHc-cCc-ccccccccc-hhhHHHHHHHHHhcCCCcEEEE-ECCcHH
Confidence 456666666665 23333 4554 221101111 122 677775442 2234457888877644777775 66653
Q ss_pred HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCC-----CCCChhHHHHHcCCCCcEEEeeC-CHHHHHHHHH
Q 017410 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGG-----HYHSQSPEAFFCHVPGLKVVIPR-SPRQAKGLLL 195 (372)
Q Consensus 123 ~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G-----~~Hs~~d~a~l~~iP~l~V~~Ps-d~~e~~~~l~ 195 (372)
+-....+. .+...+ .. |++++ .-.+..+..+ ..+..+...+.+.. |+..+... +++|+..+++
T Consensus 72 ~m~~~el~-ta~~~~-------~~-~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~ 141 (179)
T cd03372 72 LMNLGALA-TIAAEK-------PK-NLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVE 141 (179)
T ss_pred HhCHHHHH-HHHHcC-------CC-CEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHH
Confidence 22222222 222211 01 34333 2222221111 11111222344443 45555566 9999999999
Q ss_pred HhHhCCCcEEEEe
Q 017410 196 SCIRDPNPVVFFE 208 (372)
Q Consensus 196 ~a~~~~~Pv~ir~ 208 (372)
++. ++|.+|-.
T Consensus 142 ~a~--~gp~lIev 152 (179)
T cd03372 142 QAL--DGPSFIHV 152 (179)
T ss_pred Hhc--CCCEEEEE
Confidence 998 78999833
No 139
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=83.40 E-value=41 Score=32.76 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=30.8
Q ss_pred cCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 174 CHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 174 ~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
...|-+..+.|.++.|+...++.|.+.++|.+|
T Consensus 174 ~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I 206 (299)
T PRK11865 174 HGIPYVATASIGYPEDFMEKVKKAKEVEGPAYI 206 (299)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 567888899999999999999999999999999
No 140
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=83.40 E-value=34 Score=30.81 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=23.3
Q ss_pred EeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 182 VIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 182 ~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
+.+.++.|++..++++++.++|++|
T Consensus 155 ~~v~~~~el~~al~~al~~~gp~vI 179 (193)
T cd03375 155 GFSGDIKQLKEIIKKAIQHKGFSFV 179 (193)
T ss_pred EecCCHHHHHHHHHHHHhcCCCEEE
Confidence 4689999999999999999999999
No 141
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=82.38 E-value=43 Score=31.27 Aligned_cols=36 Identities=8% Similarity=0.068 Sum_probs=28.2
Q ss_pred HHHcCC--CCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHV--PGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~i--P~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.+ +.+..+...++.|++.+++.+++.++|++|
T Consensus 158 ~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lI 195 (235)
T cd03376 158 LIMAAHNIPYVATASVAYPEDLYKKVKKALSIEGPAYI 195 (235)
T ss_pred HHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEE
Confidence 344443 344446789999999999999999999998
No 142
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=82.37 E-value=32 Score=33.30 Aligned_cols=141 Identities=13% Similarity=0.023 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhH---HHHHHHHHHHHhcC-CeeEEEec
Q 017410 42 LYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCE---QGIVGFAIGLAAMG-NRAIAEIQ 117 (372)
Q Consensus 42 ~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE---~~~vg~A~GlA~~G-~~pi~~i~ 117 (372)
.-.++.++|.++--..++.+ +..|+| .+. +. | ++++.+--- ..++.+|.|++++. -++++++
T Consensus 12 i~~~~~~a~~~l~~~p~d~i-ivsdiG--c~~--------~~-~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai- 77 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVV-VVSGIG--CSA--------KT-P-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV- 77 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEE-EEECCC--ccc--------cc-C-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE-
Confidence 34677788877754444544 456776 221 12 4 455543211 34566888887764 5667764
Q ss_pred ccccH--HHHHHHHHHHHHhhhhhcCCCcccccEEEEe-CC---CCCCC-C------CC-C----C----C-hh--HHHH
Q 017410 118 FADYI--FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PY---GAVGH-G------GH-Y----H----S-QS--PEAF 172 (372)
Q Consensus 118 ~~~F~--~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~-~~---G~~g~-~------G~-~----H----s-~~--d~a~ 172 (372)
-++.- .-....+.+ ++.. ++ |++++. -. |..++ . |. + + . .+ ..++
T Consensus 78 ~GDG~f~~mg~~eL~t-A~r~--------nl-~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~ 147 (287)
T TIGR02177 78 GGDGDLYGIGGNHFVA-AGRR--------NV-DITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAI 147 (287)
T ss_pred eCchHHHhccHHHHHH-HHHh--------Cc-CeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHH
Confidence 55552 233333433 3322 24 655542 11 22211 0 10 0 0 0 01 2233
Q ss_pred HcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 173 FCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 173 l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.....-.-...+.++.|+..++++|+++++|++|
T Consensus 148 A~g~g~va~~~~~~~~eL~~ai~~Al~~~GpslI 181 (287)
T TIGR02177 148 ALGYTFVARGFSGDVAHLKEIIKEAINHKGYALV 181 (287)
T ss_pred hCCCCeEEEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 3444333333469999999999999999999998
No 143
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=80.17 E-value=10 Score=32.57 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=29.3
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+++.. |+..+...++.|++.+++++.+.++|++|
T Consensus 130 ~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i 164 (168)
T cd00568 130 ALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALI 164 (168)
T ss_pred HHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 455553 67788888999999999999999999998
No 144
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=80.11 E-value=52 Score=30.74 Aligned_cols=36 Identities=8% Similarity=0.080 Sum_probs=28.2
Q ss_pred HHHcC--CCCcEEEeeCCHHHHHHHHHHhHh-CCCcEEE
Q 017410 171 AFFCH--VPGLKVVIPRSPRQAKGLLLSCIR-DPNPVVF 206 (372)
Q Consensus 171 a~l~~--iP~l~V~~Psd~~e~~~~l~~a~~-~~~Pv~i 206 (372)
.+.++ ++....+.+.++.|++.+++.+++ .++|++|
T Consensus 160 ~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI 198 (237)
T cd02018 160 LIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFI 198 (237)
T ss_pred HHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEE
Confidence 34444 444444469999999999999998 9999999
No 145
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=79.79 E-value=70 Score=32.02 Aligned_cols=111 Identities=14% Similarity=0.029 Sum_probs=61.8
Q ss_pred CCceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccH--HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCC
Q 017410 85 KSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYI--FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGH 160 (372)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~--~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~ 160 (372)
|.+|+.+| +=.+...+|.|+|++ --++++++ -.+.. +..-+ +. .++..+ .. +++++ .-.|..+.
T Consensus 214 ~~~f~~~G-sMG~a~p~AlG~ala~p~r~Vv~i-~GDGsflm~~~e-L~-t~~~~~-------~~-nli~VVlNNg~~~~ 281 (361)
T TIGR03297 214 ARDFLTVG-SMGHASQIALGLALARPDQRVVCL-DGDGAALMHMGG-LA-TIGTQG-------PA-NLIHVLFNNGAHDS 281 (361)
T ss_pred CCceEeec-hhhhHHHHHHHHHHHCCCCCEEEE-EChHHHHHHHHH-HH-HHHHhC-------CC-CeEEEEEcCccccc
Confidence 67788765 333455788888876 34566664 55552 22212 21 222211 12 44433 33332211
Q ss_pred --CCCCCC-hhHH-HHHcCCCCc-EEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 017410 161 --GGHYHS-QSPE-AFFCHVPGL-KVVIPRSPRQAKGLLLSCIRDPNPVVFFE 208 (372)
Q Consensus 161 --~G~~Hs-~~d~-a~l~~iP~l-~V~~Psd~~e~~~~l~~a~~~~~Pv~ir~ 208 (372)
+-.+++ .-|. .+.+.. |. ..+...+..|+..+++++.+.++|++|-.
T Consensus 282 ~g~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~~~gp~lIeV 333 (361)
T TIGR03297 282 VGGQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASSANGPRLIEV 333 (361)
T ss_pred cCCcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 112222 2243 455555 43 56788999999999999999999999843
No 146
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=79.79 E-value=4.9 Score=31.51 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=47.0
Q ss_pred eCCcEEEEEeC----hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh---c--CCeEEEEcCCCCCCcHHH
Q 017410 237 EGSDITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR---K--TGRLLISHEAPVTGGFGA 307 (372)
Q Consensus 237 ~g~di~ii~~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~---~--~~~vivvEe~~~~GGlg~ 307 (372)
.+++++|++.| +....+.+|.+.|++.|++...+++.. |.+ +.+.+. + +=+.|+++.. ..||+..
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~-~~~~l~~~~g~~tvP~vfi~g~-~iGG~~~ 79 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEE-VRQGLKEYSNWPTFPQLYVNGE-LVGGCDI 79 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHH-HHHHHHHHhCCCCCCEEEECCE-EEeCHHH
Confidence 34679999888 467788899999999999999999753 333 222222 1 2255777665 4799866
Q ss_pred HHH
Q 017410 308 EIS 310 (372)
Q Consensus 308 ~i~ 310 (372)
..+
T Consensus 80 l~~ 82 (90)
T cd03028 80 VKE 82 (90)
T ss_pred HHH
Confidence 543
No 147
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=79.41 E-value=9.4 Score=38.10 Aligned_cols=108 Identities=15% Similarity=0.057 Sum_probs=63.3
Q ss_pred cchhHHHHHHHHHHHHhcCCee-EEEecccccH--HHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CCCCCCCCCC--
Q 017410 91 TPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYI--FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVGHGGHY-- 164 (372)
Q Consensus 91 ~GIaE~~~vg~A~GlA~~G~~p-i~~i~~~~F~--~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G~~g~~G~~-- 164 (372)
+|-.=-.++|.|.++-+.|... ++...|.+.. +-.+-.=.|-++.+ ++ |+|++.- ++..-.-+..
T Consensus 138 Vg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~--------kl-Pvvf~ieNN~yAiSvp~~~q 208 (358)
T COG1071 138 VGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVW--------KL-PVVFVIENNQYAISVPRSRQ 208 (358)
T ss_pred ecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHh--------cC-CEEEEEecCCceeecchhhc
Confidence 3434445667777766667333 3333577774 33222223445553 46 9998753 3332111111
Q ss_pred CChhHH---HHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEe
Q 017410 165 HSQSPE---AFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFE 208 (372)
Q Consensus 165 Hs~~d~---a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~ 208 (372)
.....+ +..-.||++.| .=.|...++...++|.+ .++|++|-.
T Consensus 209 ~~~~~~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 209 TAAEIIAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred ccchhHHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 111112 34457999988 99999999999999887 378999944
No 148
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=78.45 E-value=6.1 Score=34.67 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=43.8
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcC
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe 298 (372)
++||+-|.....+.++++.|++.|+.+=.|-+. ..|.+.|...+.+..+|+++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence 567788877778889999999999776555543 5799999998888888888874
No 149
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=77.33 E-value=21 Score=30.53 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=59.9
Q ss_pred CCceEecc--hhHHHHHHHHHHHHhcC-CeeEEEeccccc--HHHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCC
Q 017410 85 KSRVFNTP--LCEQGIVGFAIGLAAMG-NRAIAEIQFADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGA 157 (372)
Q Consensus 85 p~r~i~~G--IaE~~~vg~A~GlA~~G-~~pi~~i~~~~F--~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~ 157 (372)
|.+|+..+ -+=...++.|.|++++. -++++.+ -.+- ++- ...+.. +... .+ |++++ .-.+.
T Consensus 18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i-~GDG~f~~~-~~el~t-a~~~--------~~-~v~~vv~nN~~~ 85 (153)
T PF02775_consen 18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAI-TGDGSFLMS-LQELAT-AVRY--------GL-PVVIVVLNNGGY 85 (153)
T ss_dssp TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEE-EEHHHHHHH-GGGHHH-HHHT--------TS-SEEEEEEESSBS
T ss_pred CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEe-cCCcceeec-cchhHH-Hhhc--------cc-eEEEEEEeCCcc
Confidence 78888732 24445667788887762 4555554 4444 222 233332 3322 24 55554 32222
Q ss_pred C--C-----CCC-C--------CCChhHHHHHcCCCCcEEEeeCCH--HHHHHHHHHhHhCCCcEEE
Q 017410 158 V--G-----HGG-H--------YHSQSPEAFFCHVPGLKVVIPRSP--RQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 158 ~--g-----~~G-~--------~Hs~~d~a~l~~iP~l~V~~Psd~--~e~~~~l~~a~~~~~Pv~i 206 (372)
. + .+. . .|......+.+.+ |+..+.-.++ +|++..++++++.++|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 86 GMTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp HHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred eEeccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence 1 0 111 1 1112233455554 6666665555 9999999999999999998
No 150
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=76.56 E-value=8.6 Score=28.53 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=44.3
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhc-CCeEEEEcCCCCCCcHHHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-TGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~-~~~vivvEe~~~~GGlg~~i 309 (372)
+++|.+. +....+.+|.+.|++.|++.+.+++..-.+. .+.+.+.... +-.++++.+. ..||+-+..
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~-~~el~~~~g~~~vP~v~i~~~-~iGg~~~~~ 69 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPER-KAELEERTGSSVVPQIFFNEK-LVGGLTDLK 69 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCE-EEeCHHHHH
Confidence 4566665 4457788999999999999999998753322 3345444332 2366777765 479986543
No 151
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=76.47 E-value=16 Score=33.12 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecch-hHH-HHHHHHHHHHhc-CCeeEEEecccccH
Q 017410 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-CEQ-GIVGFAIGLAAM-GNRAIAEIQFADYI 122 (372)
Q Consensus 46 ~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GI-aE~-~~vg~A~GlA~~-G~~pi~~i~~~~F~ 122 (372)
+.+.|.+.+..| .+++ .|.+....+ ....+.-.. |.+|++.+- .=. ..+..|.|++++ .-+|++++ -.+..
T Consensus 13 ~~~~l~~~l~~d-~iiv--~d~G~~~~~-~~~~~~~~~-~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i-~GDG~ 86 (202)
T cd02006 13 VYEEMNKAFGRD-VRYV--TTIGLSQIA-GAQMLHVYK-PRHWINCGQAGPLGWTVPAALGVAAADPDRQVVAL-SGDYD 86 (202)
T ss_pred HHHHHHhhCCCC-eEEE--ECCcHHHHH-HHHhcCcCC-CCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEE-EeChH
Confidence 555566655544 3333 565511111 123333344 788887642 212 255688887766 35677775 55552
Q ss_pred -HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCC---------CC----CCCC----------hhHH-HHHcCC
Q 017410 123 -FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGH---------GG----HYHS----------QSPE-AFFCHV 176 (372)
Q Consensus 123 -~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~---------~G----~~Hs----------~~d~-a~l~~i 176 (372)
+-....+- -+... ++ |++++ .-.+..+- +. ..+. .-|. .+.+++
T Consensus 87 f~m~~~eL~-Ta~~~--------~l-pviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~ 156 (202)
T cd02006 87 FQFMIEELA-VGAQH--------RI-PYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL 156 (202)
T ss_pred hhccHHHHH-HHHHh--------CC-CeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC
Confidence 22222232 13322 35 65554 22222110 00 0010 0133 344443
Q ss_pred CCcEEEeeCCHHHHHHHHHHhHh----CCCcEEE
Q 017410 177 PGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (372)
Q Consensus 177 P~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i 206 (372)
|+.-+...++.|+..+++.+++ .++|++|
T Consensus 157 -G~~~~~v~~~~el~~al~~a~~~~~~~~~p~li 189 (202)
T cd02006 157 -GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVV 189 (202)
T ss_pred -CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEE
Confidence 6677888999999999999995 6899998
No 152
>PRK08617 acetolactate synthase; Reviewed
Probab=76.40 E-value=27 Score=36.71 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=29.8
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.+ |+.-....++.|++..++++++.++|.+|
T Consensus 497 ~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~li 531 (552)
T PRK08617 497 KYAESF-GAKGLRVTSPDELEPVLREALATDGPVVI 531 (552)
T ss_pred HHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCcEEE
Confidence 344444 67788999999999999999999999998
No 153
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=76.19 E-value=20 Score=37.85 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=63.7
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--cHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~--F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~ 158 (372)
|.+|+..+- +=...+..|.|++++. -++++.+ .++ |++...| +. .+... ++ |++++ .-.+.+
T Consensus 409 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i-~GDGsf~~~~~e-L~-ta~~~--------~l-pvi~vV~NN~~~ 476 (564)
T PRK08155 409 PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCF-SGDGSLMMNIQE-MA-TAAEN--------QL-DVKIILMNNEAL 476 (564)
T ss_pred CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEE-EccchhhccHHH-HH-HHHHh--------CC-CeEEEEEeCCcc
Confidence 778987643 3334667888887763 3455553 444 3443333 32 23322 24 65554 223321
Q ss_pred CC---------C----CCC--CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 159 GH---------G----GHY--HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 159 g~---------~----G~~--Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
+. + +.. +......+.+.+ |+.-+...+..|+...++.+++.++|++|
T Consensus 477 g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 538 (564)
T PRK08155 477 GLVHQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNEADPQAALQEAINRPGPALI 538 (564)
T ss_pred cccHHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 10 0 111 112233455665 78888999999999999999999999998
No 154
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=76.03 E-value=46 Score=30.08 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhc----C-CeeEEEecccccH-H--HHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCCC
Q 017410 96 QGIVGFAIGLAAM----G-NRAIAEIQFADYI-F--PAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYHS 166 (372)
Q Consensus 96 ~~~vg~A~GlA~~----G-~~pi~~i~~~~F~-~--ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~Hs 166 (372)
...+++|.|+|+. | -++++++ ..+.- + ..++.+. .++.+ .. |++++ ..++.. .++.+..
T Consensus 78 G~gl~~A~G~Ala~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~-~A~~~--------~~-~li~vvdnN~~~-~~~~~~~ 145 (195)
T cd02007 78 STSISAALGMAVARDLKGKKRKVIAV-IGDGALTGGMAFEALN-NAGYL--------KS-NMIVILNDNEMS-ISPNVGT 145 (195)
T ss_pred hhhHHHHHHHHHHHHHhCCCCeEEEE-EcccccccChHHHHHH-HHHHh--------CC-CEEEEEECCCcc-cCCCCCC
Confidence 4455677777765 2 2344443 55552 3 4455554 24422 13 76665 444432 2222221
Q ss_pred hhHHHHHcCCCCcE---EEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 017410 167 QSPEAFFCHVPGLK---VVIPRSPRQAKGLLLSCIRDPNPVVFFE 208 (372)
Q Consensus 167 ~~d~a~l~~iP~l~---V~~Psd~~e~~~~l~~a~~~~~Pv~ir~ 208 (372)
. ...++. -++. ++...|..++.+.++.+.+.++|++|..
T Consensus 146 ~--~~~~~a-~G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~~ 187 (195)
T cd02007 146 P--GNLFEE-LGFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHV 187 (195)
T ss_pred H--HHHHHh-cCCCccceECCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 2 123333 2333 3567789999999999888889999844
No 155
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=76.01 E-value=25 Score=37.04 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecch--hHHHHHHHHHHHHhcC-CeeEEEeccccc
Q 017410 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADY 121 (372)
Q Consensus 45 a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F 121 (372)
.+.+.|.+.+.+| .+ +..|.+....+. ...+.-.. |.+|++.+- +-...++.|.|++++. -++++.+ ..+.
T Consensus 367 ~~~~~l~~~l~~~--~i-v~~d~g~~~~~~-~~~~~~~~-p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~-~GDG 440 (558)
T TIGR00118 367 QVIEELSRVTKDE--AI-VTTDVGQHQMWA-AQFYPFRK-PRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICI-TGDG 440 (558)
T ss_pred HHHHHHHhhCCCC--eE-EEeCCcHHHHHH-HHhcccCC-CCeEEeCCccccccchhhHHHhhhhhCCCCcEEEE-Ecch
Confidence 3666666666543 22 334544111111 22233343 788888653 2344677888877763 3455543 4444
Q ss_pred --HHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC----------CC---CCC-CChhHH-HHHcCCCCcEEEe
Q 017410 122 --IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG----------HG---GHY-HSQSPE-AFFCHVPGLKVVI 183 (372)
Q Consensus 122 --~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g----------~~---G~~-Hs~~d~-a~l~~iP~l~V~~ 183 (372)
++... .+. .+... ++ |++++ .-.|..+ .+ ... +..-|. .+...+ |+.-+.
T Consensus 441 ~f~~~~~-eL~-ta~~~--------~l-~~~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~ 508 (558)
T TIGR00118 441 SFQMNLQ-ELS-TAVQY--------DI-PVKILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAY-GIKGIR 508 (558)
T ss_pred HHhccHH-HHH-HHHHh--------CC-CeEEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHC-CCeEEE
Confidence 33322 222 23322 34 55554 2233221 11 111 112233 455555 677788
Q ss_pred eCCHHHHHHHHHHhHhCCCcEEE
Q 017410 184 PRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 184 Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
-.+++|++.+++++++.++|++|
T Consensus 509 v~~~~~l~~al~~a~~~~~p~li 531 (558)
T TIGR00118 509 IEKPEELDEKLKEALSSNEPVLL 531 (558)
T ss_pred ECCHHHHHHHHHHHHhCCCCEEE
Confidence 89999999999999999999998
No 156
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=75.52 E-value=47 Score=32.10 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=23.5
Q ss_pred EEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 181 VVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 181 V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.....++.|+..+++.|++.++|++|
T Consensus 172 ~~~~~~~~el~~al~~Al~~~Gp~lI 197 (286)
T PRK11867 172 RGFDSDVKQLTELIKAAINHKGFSFV 197 (286)
T ss_pred EecCCCHHHHHHHHHHHHhCCCCEEE
Confidence 33578999999999999999999999
No 157
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=75.51 E-value=74 Score=33.18 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=74.6
Q ss_pred HHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC
Q 017410 80 ADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158 (372)
Q Consensus 80 ~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~ 158 (372)
.++. .=|||.+= .||+++=.|..+++- |..-++.+...+.+.-+.--+.|.- .++ . |+++++.+-..
T Consensus 47 aqal-GIk~I~~R-nEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~hal~gv~NA~-~n~--------w-Pll~IgGsa~~ 114 (571)
T KOG1185|consen 47 AQAL-GIKFIGTR-NEQAAVYAASAYGYLTGKPGVLLVVSGPGLTHALAGVANAQ-MNC--------W-PLLLIGGSAST 114 (571)
T ss_pred HHHc-CCeEeecc-cHHHHHHHHHHhhhhcCCCeEEEEecCChHHHHHHHhhhhh-hcc--------C-cEEEEecccch
Confidence 3555 67888887 999999888888775 4444555556777766666565422 223 3 88776322211
Q ss_pred -C-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeccc
Q 017410 159 -G-HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKW 211 (372)
Q Consensus 159 -g-~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~ 211 (372)
- .-|..+......++|..=.. +..|.+..+.-..++.|++ .+||+|+=.|..
T Consensus 115 ~~~~rGafQe~dQvel~rp~~K~-~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 115 LLENRGAFQELDQVELFRPLCKF-VARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred hhhcccccccccHHhhhhhhhhh-ccCCCChhhccHHHHHHHHHHhcCCCCceEEecccc
Confidence 1 11333323344555554443 6678888887777777776 389999988776
No 158
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=74.84 E-value=18 Score=27.54 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=38.8
Q ss_pred cEEEEEeCh-hHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCC
Q 017410 240 DITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAP 300 (372)
Q Consensus 240 di~ii~~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~ 300 (372)
++.|++.+. ....+++.++.|+++|+.+.+ +.+. +.+....-...-.+...++++.+..
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDKE 62 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcch
Confidence 466777664 567899999999999999977 4443 4554443222233556778887654
No 159
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=74.77 E-value=32 Score=36.28 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=63.3
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG 159 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g 159 (372)
|.+|+..+- +=...++.|.|++++. -+|++.+ .++.. +-....+. .+... ++ |++++ .-.|..+
T Consensus 404 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~eL~-Ta~~~--------~l-~i~~vV~NN~~y~ 472 (561)
T PRK06048 404 PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDI-AGDGSFQMNSQELA-TAVQN--------DI-PVIVAILNNGYLG 472 (561)
T ss_pred CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEE-EeCchhhccHHHHH-HHHHc--------CC-CeEEEEEECCccH
Confidence 778887542 3444677888888863 3566654 55542 22222222 23222 24 55444 2233221
Q ss_pred C---------CCCC------CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 160 H---------GGHY------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 160 ~---------~G~~------Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
. ++.. +......+.+.+ |.+-+.-.+..|+..++++++..++|++|
T Consensus 473 ~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~t~~el~~al~~a~~~~~p~li 533 (561)
T PRK06048 473 MVRQWQELFYDKRYSHTCIKGSVDFVKLAEAY-GALGLRVEKPSEVRPAIEEAVASDRPVVI 533 (561)
T ss_pred HHHHHHHHHcCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 0 1110 111222455554 67788899999999999999999999999
No 160
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=73.84 E-value=28 Score=36.92 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=28.4
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+...+ |..-+...+++|++.+++++++.++|++|
T Consensus 491 ~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 525 (578)
T PRK06546 491 AIAAAL-GIHAVRVEDPKDVRGALREAFAHPGPALV 525 (578)
T ss_pred HHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 344444 55566778999999999999999999999
No 161
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=72.97 E-value=9.1 Score=30.58 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=47.6
Q ss_pred eCCcEEEEEeC----hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcCCCCCCcHHHHHH
Q 017410 237 EGSDITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGAEIS 310 (372)
Q Consensus 237 ~g~di~ii~~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe~~~~GGlg~~i~ 310 (372)
..++++|++.| +....+.+|.+.|++.|++...+|+.. .|-..+.+.+.-. .+=+.|+++.. ..||+.+..+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~-~~~~~~~l~~~tg~~tvP~vfi~g~-~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE-DPEIRQGIKEYSNWPTIPQLYVKGE-FVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCE-EEeChHHHHH
Confidence 34679999888 567888899999999999999999853 1211222322111 13355777765 4799877554
No 162
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=72.67 E-value=42 Score=35.25 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=61.6
Q ss_pred CCceEecc-hhH-HHHHHHHHHHHhcC--CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCC
Q 017410 85 KSRVFNTP-LCE-QGIVGFAIGLAAMG--NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAV 158 (372)
Q Consensus 85 p~r~i~~G-IaE-~~~vg~A~GlA~~G--~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~ 158 (372)
|.+|+..+ ..= ...+..|.|++++. -+|++++ -++.. +.....+. .+... ++ |++++ .-.+..
T Consensus 386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i-~GDGsf~~~~~eL~-Ta~~~--------~l-pi~ivV~NN~~~ 454 (549)
T PRK06457 386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISF-VGDGGFTMTMMELI-TAKKY--------DL-PVKIIIYNNSKL 454 (549)
T ss_pred CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEE-EcccHHhhhHHHHH-HHHHH--------CC-CeEEEEEECCcc
Confidence 66777642 111 12455778877764 4777775 55552 33333332 23322 24 55554 222222
Q ss_pred C----------CCCCCCC--hhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 159 G----------HGGHYHS--QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 159 g----------~~G~~Hs--~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
+ .....+. .-|. .+...+ |..-....++.|++..++++++.++|++|
T Consensus 455 g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 514 (549)
T PRK06457 455 GMIKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVL 514 (549)
T ss_pred chHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 1011111 1133 444444 77778889999999999999999999998
No 163
>PRK06163 hypothetical protein; Provisional
Probab=72.54 E-value=77 Score=28.90 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcC-CeeEEEeccccc
Q 017410 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFADY 121 (372)
Q Consensus 43 ~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G-~~pi~~i~~~~F 121 (372)
|+-+-+.|.+.+..+ ++++ .|.+ ... ...+...+.|.+|+.+| +=...+..|.|++++. -++++++ -++.
T Consensus 15 ~~~~i~~l~~~l~~~-~~iv--~D~G--~~~--~~~~~~~~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i-~GDG 85 (202)
T PRK06163 15 RFDLTCRLVAKLKDE-EAVI--GGIG--NTN--FDLWAAGQRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIAL-EGDG 85 (202)
T ss_pred HHHHHHHHHHhcCCC-CEEE--ECCC--ccH--HHHHHhhcCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEE-Ecch
Confidence 555566666666543 3433 4655 210 11111112277888544 2233445777877763 5666665 5665
Q ss_pred H-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC-CCC--CCCCh-hHH-HHHcCCCCcE-EEeeCCHHHHHHH
Q 017410 122 I-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-HGG--HYHSQ-SPE-AFFCHVPGLK-VVIPRSPRQAKGL 193 (372)
Q Consensus 122 ~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g-~~G--~~Hs~-~d~-a~l~~iP~l~-V~~Psd~~e~~~~ 193 (372)
. +-....+. .+.. | .++ |++++ .-.+..+ ..+ ..+.. -|. .+.+.+ |+. -+...+..|+..+
T Consensus 86 ~f~m~~~eL~-Ta~~--~-----~~l-pi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~a 155 (202)
T PRK06163 86 SLLMQLGALG-TIAA--L-----APK-NLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEAL 155 (202)
T ss_pred HHHHHHHHHH-HHHH--h-----cCC-CeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHH
Confidence 2 22222222 1221 1 023 54444 3332222 111 11111 244 454554 554 5567899999999
Q ss_pred HHHhHhCCCcEEEE
Q 017410 194 LLSCIRDPNPVVFF 207 (372)
Q Consensus 194 l~~a~~~~~Pv~ir 207 (372)
++.+++.++|++|-
T Consensus 156 l~~a~~~~~p~lIe 169 (202)
T PRK06163 156 VDQALSGPGPSFIA 169 (202)
T ss_pred HHHHHhCCCCEEEE
Confidence 99999999999983
No 164
>PRK08322 acetolactate synthase; Reviewed
Probab=71.65 E-value=38 Score=35.43 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=29.6
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.. |+.-+...+++|++..++++++.++|++|
T Consensus 489 ~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 523 (547)
T PRK08322 489 KYAESY-GAKGYRVESADDLLPTLEEALAQPGVHVI 523 (547)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 344444 67788889999999999999999999998
No 165
>PRK08266 hypothetical protein; Provisional
Probab=71.44 E-value=48 Score=34.71 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=62.3
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~ 158 (372)
|.+|+..+. +=...+..|.|+++.. -++++.+ .++.. +.....+. .+... ++ |++++ .-+|..
T Consensus 392 ~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v-~GDG~f~~~~~eL~-ta~~~--------~l-pv~ivv~NN~~y~ 460 (542)
T PRK08266 392 PRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSI-TGDGGFMFGVQELA-TAVQH--------NI-GVVTVVFNNNAYG 460 (542)
T ss_pred CCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEE-EcchhhhccHHHHH-HHHHh--------CC-CeEEEEEeCCcch
Confidence 778887753 1222446788887764 3555554 44542 22233332 23322 35 66654 222221
Q ss_pred -------C-CCCCC----CChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 017410 159 -------G-HGGHY----HSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (372)
Q Consensus 159 -------g-~~G~~----Hs~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~ir 207 (372)
. .++.+ ...-|. .+.+++ |...+.-.+..|++..++++++.++|++|-
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 521 (542)
T PRK08266 461 NVRRDQKRRFGGRVVASDLVNPDFVKLAESF-GVAAFRVDSPEELRAALEAALAHGGPVLIE 521 (542)
T ss_pred HHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 0 11211 111133 455555 777888899999999999999989999983
No 166
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=71.36 E-value=10 Score=31.27 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=37.8
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (372)
++|.+. +....+.+|.+.|+++|++.+++|+.. .|++.+.|.+.+++.
T Consensus 2 i~iy~~-p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~ 49 (113)
T cd03033 2 IIFYEK-PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDL 49 (113)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHc
Confidence 444443 445678889999999999999999987 899999988877644
No 167
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=71.10 E-value=11 Score=33.56 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=43.7
Q ss_pred HHHHHHHHHhHhCCCcEEEEecccccccccccCC---CCCcccc--------CCceEEeeeCCcEEEEEeChhHHHHHHH
Q 017410 188 RQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVP---EDDYMLP--------LSEAEVIREGSDITLVGWGAQLSIMEQA 256 (372)
Q Consensus 188 ~e~~~~l~~a~~~~~Pv~ir~p~~l~r~~~~~v~---~~~~~~~--------~Gk~~v~~~g~di~ii~~G~~~~~a~~A 256 (372)
+|+.+++-+|+-.+|-||| .-+.......+ ....+++ .++...+.+-..+.|++-.+.-.++.+.
T Consensus 25 edaARlLAQA~vgeG~IYi----~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~ 100 (172)
T PF10740_consen 25 EDAARLLAQAIVGEGTIYI----YGFGEMEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVAL 100 (172)
T ss_dssp HHHHHHHHHHHHTT--EEE----EE-GGGGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEE----EecChHHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHH
Confidence 6788999999999999999 33322211000 0111121 1122334445678888888888899999
Q ss_pred HHHHHhcCCceeEEe
Q 017410 257 CLDAEKEGISCELID 271 (372)
Q Consensus 257 a~~L~~~Gi~v~vi~ 271 (372)
+++|.++|+++-+|.
T Consensus 101 a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 101 AKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHT--EEEEE
T ss_pred HHHHHHCCCCEEEEE
Confidence 999999999998888
No 168
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=70.45 E-value=49 Score=31.05 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhc------CCeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCC---
Q 017410 97 GIVGFAIGLAAM------GNRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYH--- 165 (372)
Q Consensus 97 ~~vg~A~GlA~~------G~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~H--- 165 (372)
..++.|.|+|++ ..+.++.+--+.|. ...++.+.. ++..+ +.+++++ ..++.. .++.++
T Consensus 109 ~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~-a~~~~--------l~~li~vvdnN~~~-~~~~~~~~~ 178 (255)
T cd02012 109 QGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASF-AGHYK--------LDNLIAIVDSNRIQ-IDGPTDDIL 178 (255)
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHH-HHHcC--------CCcEEEEEECCCcc-ccCcHhhcc
Confidence 345677777765 45555543333333 235666542 44322 3134444 444432 222222
Q ss_pred ChhHH-HHHcCCCCcEEEeeC--CHHHHHHHHHHhHhC-CCcEEEEec
Q 017410 166 SQSPE-AFFCHVPGLKVVIPR--SPRQAKGLLLSCIRD-PNPVVFFEP 209 (372)
Q Consensus 166 s~~d~-a~l~~iP~l~V~~Ps--d~~e~~~~l~~a~~~-~~Pv~ir~p 209 (372)
...|+ ..++++ |+.++.-. |..++...++.+.+. ++|++|...
T Consensus 179 ~~~~~~~~~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 179 FTEDLAKKFEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred CchhHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 12344 466665 78888777 999999999999887 899998543
No 169
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=70.09 E-value=55 Score=34.42 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecch--hHHHHHHHHHHHHhcCCeeEEEecccccH
Q 017410 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMGNRAIAEIQFADYI 122 (372)
Q Consensus 45 a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GI--aE~~~vg~A~GlA~~G~~pi~~i~~~~F~ 122 (372)
.+.+.|.+.+.++++++++. |.+ ........+..-+.|.+|++.+. +=...+..|.|++++--++++.+ -++..
T Consensus 370 ~~~~~l~~~l~~~~~~ivv~-d~~--~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala~~~~vv~i-~GDGs 445 (554)
T TIGR03254 370 GALEAIRDVLKDNPDIYLVN-EGA--NTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVAL-EGDSA 445 (554)
T ss_pred HHHHHHHHhcCCCCCEEEEe-CCc--hHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhcCCCcEEEE-EcCch
Confidence 35566777776545655544 322 11100111222122778887642 22234556777777645677765 55552
Q ss_pred -HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eC-CCCC-C----CCC-----CC--CChhHHHHHcCCCCcEEEeeCCH
Q 017410 123 -FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-AP-YGAV-G----HGG-----HY--HSQSPEAFFCHVPGLKVVIPRSP 187 (372)
Q Consensus 123 -~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~-~G~~-g----~~G-----~~--Hs~~d~a~l~~iP~l~V~~Psd~ 187 (372)
+-....+. .+... ++ |++++ .- +|.. + ..+ .. +..+...+.+.+ |..-+.-.++
T Consensus 446 f~m~~~EL~-Ta~r~--------~l-~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~v~~~ 514 (554)
T TIGR03254 446 FGFSGMEVE-TICRY--------NL-PVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAF-GGVGYNVTTP 514 (554)
T ss_pred hcccHHHHH-HHHHc--------CC-CEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHC-CCeEEEeCCH
Confidence 22222232 23322 34 55554 22 3321 1 001 10 111122444554 5566777999
Q ss_pred HHHHHHHHHhHhCCCcEEE
Q 017410 188 RQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 188 ~e~~~~l~~a~~~~~Pv~i 206 (372)
+|+...++++++.++|++|
T Consensus 515 ~el~~al~~a~~~~~p~lI 533 (554)
T TIGR03254 515 DELKAALNEALASGKPTLI 533 (554)
T ss_pred HHHHHHHHHHHhCCCCEEE
Confidence 9999999999999999998
No 170
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=69.67 E-value=35 Score=36.24 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=62.8
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEeccccc--HHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F--~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~ 158 (372)
|.+|++.+- +=...++.|.|++++. -++++.+ -++. ++.. ..+. .+... ++ |++++ .-.|..
T Consensus 409 p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i-~GDGsf~m~~-~eL~-Ta~~~--------~l-pv~~vV~NN~~~ 476 (586)
T PRK06276 409 PRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAI-TGDGGFLMNS-QELA-TIAEY--------DI-PVVICIFDNRTL 476 (586)
T ss_pred CCeEEcCCCccccccchhHHHhhhhhcCCCcEEEE-EcchHhhccH-HHHH-HHHHh--------CC-CeEEEEEeCCch
Confidence 788887642 3344677888888763 3455553 4444 2222 2222 22222 24 55554 222221
Q ss_pred C-----------C--CCCCCC-hhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 159 G-----------H--GGHYHS-QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 159 g-----------~--~G~~Hs-~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
+ . .+.++. .-|. .+...+ |..-+.-.++.|++..++++++.++|.+|
T Consensus 477 g~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 538 (586)
T PRK06276 477 GMVYQWQNLYYGKRQSEVHLGETPDFVKLAESY-GVKADRVEKPDEIKEALKEAIKSGEPYLL 538 (586)
T ss_pred HHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 1 0 111111 1233 455555 67788889999999999999999999998
No 171
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=69.12 E-value=59 Score=34.12 Aligned_cols=110 Identities=8% Similarity=0.017 Sum_probs=62.3
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG 159 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g 159 (372)
|.+|+..+- +=...+..|.|++++. -++++.+ -++.. +-....+. .+... ++ |++++ .-.+..+
T Consensus 391 ~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i-~GDG~f~~~~~eL~-ta~~~--------~l-~v~ivV~NN~~~~ 459 (548)
T PRK08978 391 PENFITSSGLGTMGFGLPAAIGAQVARPDDTVICV-SGDGSFMMNVQELG-TIKRK--------QL-PVKIVLLDNQRLG 459 (548)
T ss_pred CCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEE-EccchhhccHHHHH-HHHHh--------CC-CeEEEEEeCCccH
Confidence 788886532 2222466778877763 5666664 55542 22222232 22222 24 55554 2222211
Q ss_pred ---------CC----CCCC-ChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 160 ---------HG----GHYH-SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 160 ---------~~----G~~H-s~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+ +... ..-|. .+.+.+ |..-....++.|++..++++++.++|.+|
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 520 (548)
T PRK08978 460 MVRQWQQLFFDERYSETDLSDNPDFVMLASAF-GIPGQTITRKDQVEAALDTLLNSEGPYLL 520 (548)
T ss_pred HHHHHHHHHhCCcceecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 01 1111 11233 455554 77788889999999999999999999998
No 172
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=69.00 E-value=24 Score=34.68 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=61.7
Q ss_pred EeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC-eEEEEcCCCCCCcHHHHHHHH
Q 017410 234 VIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG-RLLISHEAPVTGGFGAEISAS 312 (372)
Q Consensus 234 v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~-~vivvEe~~~~GGlg~~i~~~ 312 (372)
.+-+|..++++.+|.....+.+- ++.-|.+|.++-..+=.-.+.|.|.+.+..++ ++++|-.+....|.-+.+.+.
T Consensus 88 ~lePgd~vLv~~~G~wg~ra~D~---~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~ 164 (385)
T KOG2862|consen 88 LLEPGDNVLVVSTGTWGQRAADC---ARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAI 164 (385)
T ss_pred hcCCCCeEEEEEechHHHHHHHH---HHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHH
Confidence 45578889999999988766554 44459999999887778889999999888765 444444333344554544433
Q ss_pred HHHhccc----cCCCcEEEEeccCC
Q 017410 313 ILERCFL----RLEAPVARVCGLDT 333 (372)
Q Consensus 313 l~~~~~~----~l~~~v~~ig~~~~ 333 (372)
..+.+.. .+-..|..+|+.++
T Consensus 165 ~g~lc~k~~~lllVD~VaSlggt~F 189 (385)
T KOG2862|consen 165 SGELCHKHEALLLVDTVASLGGTEF 189 (385)
T ss_pred HHHHhhcCCeEEEEechhhcCCccc
Confidence 3333210 11223567776664
No 173
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=68.71 E-value=46 Score=29.36 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 176 VPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 176 iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
++...|..|.+-.++.+.++.+++.++|.+|
T Consensus 142 ~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI 172 (178)
T cd02008 142 VKRVVVVDPYDLKAIREELKEALAVPGVSVI 172 (178)
T ss_pred CCEEEecCccCHHHHHHHHHHHHhCCCCEEE
Confidence 3444444555555555888999999999988
No 174
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=67.95 E-value=17 Score=30.24 Aligned_cols=49 Identities=29% Similarity=0.324 Sum_probs=38.6
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
++|..+-+ ...+.+|.+-|++.||+..+++... .|++.+.|.+.++..+
T Consensus 3 itiy~~p~-C~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPN-CSTCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKLG 51 (117)
T ss_pred EEEEeCCC-ChHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHcC
Confidence 34444433 3588999999999999999999876 7999999888877654
No 175
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=67.82 E-value=24 Score=36.85 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=86.2
Q ss_pred CCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhh
Q 017410 58 PRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKF 136 (372)
Q Consensus 58 ~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~ 136 (372)
..++.+-.|-... .++.+ ..++--|++..- +|-|+.=.|=|-|+. |.-.++. +|+..-.-|++-|-- +
T Consensus 20 ~~iFGVPGDyNL~----lLD~i-~~~~~lrWvGn~-NELNaaYAADGYaR~~Gi~alvT-TfGVGELSA~NGIAG--S-- 88 (557)
T COG3961 20 KSIFGVPGDYNLS----LLDKI-YSVPGLRWVGNA-NELNAAYAADGYARLNGISALVT-TFGVGELSALNGIAG--S-- 88 (557)
T ss_pred ceeeeCCCcccHH----HHHHh-hcCCCceeeccc-chhhhhhhhcchhhhcCceEEEE-ecccchhhhhcccch--h--
Confidence 4566666664321 23333 333123555443 899999999999996 7777776 798887777777653 2
Q ss_pred hhhcCCCcccccEEEEe--CCCCC-C-CCCCCCCh-h-HHHHH----cCCCC-cEEEeeCC--HHHHHHHHHHhHhCCCc
Q 017410 137 RYRSGNQFNCGGLTVRA--PYGAV-G-HGGHYHSQ-S-PEAFF----CHVPG-LKVVIPRS--PRQAKGLLLSCIRDPNP 203 (372)
Q Consensus 137 ~~~~~~~~~~~pvvi~~--~~G~~-g-~~G~~Hs~-~-d~a~l----~~iP~-l~V~~Psd--~~e~~~~l~~a~~~~~P 203 (372)
|.. .+ ||+.+. |.-.. . .---||.. + |...+ +.+-- -..+.+.+ +.|..++++.++..++|
T Consensus 89 -YAE----~v-pVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~RP 162 (557)
T COG3961 89 -YAE----HV-PVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRRP 162 (557)
T ss_pred -hhh----cC-CEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhcCC
Confidence 333 36 887762 22211 1 11235652 2 44322 22211 12344544 78999999999999999
Q ss_pred EEEEecccccccc
Q 017410 204 VVFFEPKWLYRLS 216 (372)
Q Consensus 204 v~ir~p~~l~r~~ 216 (372)
|||..|.-+.+.+
T Consensus 163 vYI~lP~dva~~~ 175 (557)
T COG3961 163 VYIGLPADVADLP 175 (557)
T ss_pred eEEEcchHHhcCc
Confidence 9998888766554
No 176
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=67.15 E-value=15 Score=31.17 Aligned_cols=66 Identities=15% Similarity=0.328 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeeccc-CCC-------------CHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHH
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTL-IPW-------------DKETVEASVRKTGRLLISHEAPVTGGFGAEISAS 312 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i-~P~-------------d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~ 312 (372)
|.+...+..+++.|++.|+++++++++-. .|+ +.+.+.+.++..+.+|+.=--+ .|++...+...
T Consensus 14 ~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y-~~~~s~~lK~~ 92 (152)
T PF03358_consen 14 SNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVY-NGSVSGQLKNF 92 (152)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEB-TTBE-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEE-cCcCChhhhHH
Confidence 44556677777788888999999999987 222 1244667777888777664433 57776666555
Q ss_pred H
Q 017410 313 I 313 (372)
Q Consensus 313 l 313 (372)
+
T Consensus 93 l 93 (152)
T PF03358_consen 93 L 93 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 177
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=67.05 E-value=95 Score=27.79 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=58.3
Q ss_pred CCceEecchhHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEE-EeCCCCCCC-
Q 017410 85 KSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTV-RAPYGAVGH- 160 (372)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi-~~~~G~~g~- 160 (372)
|.+|+..|- =-..++.|.|++++. -++++.+ -.+.. +-....+. .++.. ++.|+++ +.-++..+.
T Consensus 41 ~~~~~~~g~-mG~~lpaAiGaala~p~~~Vv~i-~GDG~f~m~~~eL~-ta~~~--------~l~~i~ivV~NN~~yg~~ 109 (188)
T cd03371 41 AQDFLTVGS-MGHASQIALGIALARPDRKVVCI-DGDGAALMHMGGLA-TIGGL--------APANLIHIVLNNGAHDSV 109 (188)
T ss_pred cCceeecCc-cccHHHHHHHHHHhCCCCcEEEE-eCCcHHHhhccHHH-HHHHc--------CCCCcEEEEEeCchhhcc
Confidence 488887642 222456778877653 4566664 55552 22222222 22221 1113333 332222211
Q ss_pred CC-CCCC-hhHH-HHHcCCCCcEE-EeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 017410 161 GG-HYHS-QSPE-AFFCHVPGLKV-VIPRSPRQAKGLLLSCIRDPNPVVFFE 208 (372)
Q Consensus 161 ~G-~~Hs-~~d~-a~l~~iP~l~V-~~Psd~~e~~~~l~~a~~~~~Pv~ir~ 208 (372)
.+ .+.. .-|. .+...+ |+.- ....++.|+..+++++++.++|++|-.
T Consensus 110 ~~~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lIev 160 (188)
T cd03371 110 GGQPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAADGPAFIEV 160 (188)
T ss_pred CCcCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 1111 1233 444444 4443 456799999999999999999999843
No 178
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=66.73 E-value=52 Score=34.69 Aligned_cols=109 Identities=8% Similarity=-0.010 Sum_probs=62.4
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEeccccc--HHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F--~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~ 158 (372)
|.+|+..+- +=...++.|.|++++. -++++.+ -++. ++-..| +. .+... ++ |++++ .-.|..
T Consensus 404 ~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i-~GDG~f~m~~~e-L~-Ta~~~--------~l-pvi~vV~NN~~~ 471 (563)
T PRK08527 404 PRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINF-TGDGSILMNIQE-LM-TAVEY--------KI-PVINIILNNNFL 471 (563)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-ecCchhcccHHH-HH-HHHHh--------CC-CeEEEEEECCcc
Confidence 778886542 2233667888888774 4555554 4443 333322 32 23322 35 66554 222221
Q ss_pred C---------CC----CCCCC-hhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 159 G---------HG----GHYHS-QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 159 g---------~~----G~~Hs-~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
+ .+ +..+. .-|. .+.+++ |..-+.-.++.|+..++++++..++|++|
T Consensus 472 ~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 533 (563)
T PRK08527 472 GMVRQWQTFFYEERYSETDLSTQPDFVKLAESF-GGIGFRVTTKEEFDKALKEALESDKVALI 533 (563)
T ss_pred hhHHHHHHhhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 1 01 11111 1133 455555 56778889999999999999999999999
No 179
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=66.46 E-value=67 Score=33.60 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=30.3
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.+ |+.-....++.|+...++++++.++|.+|
T Consensus 491 ~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lI 525 (539)
T TIGR02418 491 KYAESF-GAKGLRVESPDQLEPTLRQAMEVEGPVVV 525 (539)
T ss_pred HHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 455555 77788999999999999999999999999
No 180
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=64.33 E-value=36 Score=32.89 Aligned_cols=144 Identities=12% Similarity=0.072 Sum_probs=73.8
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHh-CCCceEecchhHHHHHHHHHHHHhcC-CeeEEEecc
Q 017410 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRF-GKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQF 118 (372)
Q Consensus 41 ~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~-~p~r~i~~GIaE~~~vg~A~GlA~~G-~~pi~~i~~ 118 (372)
..-.++.+++.++--..++.+ +..|.+ .+ ..+ ..| .+..+.-. =...+.+|.|+++.. -++++.+ -
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~i-vvsdiG--~~----~~~-~~~~~~~~~~~~---mG~alp~AiGaklA~pd~~VVai-~ 85 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVV-IVSGIG--QA----AKM-PHYINVNGFHTL---HGRAIPAATAVKATNPELTVIAE-G 85 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEE-EEeCch--Hh----hhH-HHHccCCCCCcc---cccHHHHHHHHHHHCCCCcEEEE-E
Confidence 345778888877644444544 446655 21 111 112 01111111 123566777777765 5777774 5
Q ss_pred cccH--HHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCC--CCCCC-C------C--C-C---C---ChhHH-HHHcC
Q 017410 119 ADYI--FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APY--GAVGH-G------G--H-Y---H---SQSPE-AFFCH 175 (372)
Q Consensus 119 ~~F~--~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~--G~~g~-~------G--~-~---H---s~~d~-a~l~~ 175 (372)
++.- .-.+..+.+ ++.. ++ |++++ .-. |..+. . | . + . ..-|. .++.+
T Consensus 86 GDG~~~~iG~~eL~t-A~r~--------nl-~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a 155 (280)
T PRK11869 86 GDGDMYAEGGNHLIH-AIRR--------NP-DITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIA 155 (280)
T ss_pred CchHHhhCcHHHHHH-HHHh--------Cc-CcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHH
Confidence 6653 222455543 3332 24 55554 221 21110 0 0 0 0 0 00133 33333
Q ss_pred --CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 176 --VPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 176 --iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+....+.++.|++.+++.|++.++|++|
T Consensus 156 ~G~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lI 188 (280)
T PRK11869 156 LDASFVARTFSGDIEETKEILKEAIKHKGLAIV 188 (280)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 3333333499999999999999999999999
No 181
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=64.00 E-value=33 Score=35.17 Aligned_cols=112 Identities=16% Similarity=0.068 Sum_probs=72.4
Q ss_pred ecchhHHHHHHHHHHHHhcCCee-EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChh
Q 017410 90 NTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQS 168 (372)
Q Consensus 90 ~~GIaE~~~vg~A~GlA~~G~~p-i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~ 168 (372)
-.+--||++.-+|-|.|+.-.+| ++-.+..+........+...++ + .. |+|+.+.--....-|+---|+
T Consensus 133 vLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATNvvtp~ADAla--D-------g~-PlVvftGQVptsaIGtDAFQE 202 (675)
T KOG4166|consen 133 VLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATNVVTPLADALA--D-------GV-PLVVFTGQVPTSAIGTDAFQE 202 (675)
T ss_pred cccccccccchhhhhhhhhcCCCcEEEEecCCCcccccchhhHHhh--c-------CC-cEEEEecccchhhcccchhcc
Confidence 35678999999999999986666 4444566665443333332222 1 14 877653211112223322344
Q ss_pred -HH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEecccc
Q 017410 169 -PE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWL 212 (372)
Q Consensus 169 -d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~ir~p~~l 212 (372)
|+ .+-|++-.|+|. -.|-+|+-.-+++|++. ++||.+-.||-.
T Consensus 203 adiVgisRScTKwNvm-VkdVedlPrrI~EAFeiATSGRPGPVLVDlPKDv 252 (675)
T KOG4166|consen 203 ADIVGISRSCTKWNVM-VKDVEDLPRRIEEAFEIATSGRPGPVLVDLPKDV 252 (675)
T ss_pred CCeeeeeeccceehee-eecHHHhhHHHHHHhhhhccCCCCCeEeeCcHHH
Confidence 44 677888888765 47889999999999983 899999888853
No 182
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=63.79 E-value=34 Score=28.17 Aligned_cols=58 Identities=9% Similarity=-0.005 Sum_probs=38.7
Q ss_pred CcEEEEEeC--h-hHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHH-HhcCCeEEEEcCCC
Q 017410 239 SDITLVGWG--A-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEAS-VRKTGRLLISHEAP 300 (372)
Q Consensus 239 ~di~ii~~G--~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~-~~~~~~vivvEe~~ 300 (372)
.++.|++.+ . ....+++.++.|+++|+.+.+-. + +.+... +..+ -.+...++++.+..
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~-~--~sl~kq-lk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDD-S--GSIGRR-YARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeC-C--CCHHHH-HHHhHhcCCCEEEEECcCc
Confidence 357788877 4 45678888999999999988743 3 555433 3333 23456777776654
No 183
>PLN02470 acetolactate synthase
Probab=63.74 E-value=67 Score=34.08 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=29.9
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~ir 207 (372)
.+.+.+ |..-..-.++.|+..+++++++.++|++|-
T Consensus 518 ~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 553 (585)
T PLN02470 518 KFAEGC-KIPAARVTRKSDLREAIQKMLDTPGPYLLD 553 (585)
T ss_pred HHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 455554 677788899999999999999999999983
No 184
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=63.37 E-value=11 Score=30.58 Aligned_cols=41 Identities=32% Similarity=0.393 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 250 ~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
...+.+|.+.|++.|+++..+|+.. .|++.+.|.+.++..+
T Consensus 6 C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 6 CSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSKLG 46 (110)
T ss_dssp -HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHHhc
Confidence 4678899999999999999999886 7899998887776543
No 185
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=63.17 E-value=67 Score=33.92 Aligned_cols=145 Identities=14% Similarity=0.061 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecch-h-HHHHHHHHHHHHhcC-CeeEEEeccccc
Q 017410 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFADY 121 (372)
Q Consensus 45 a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GI-a-E~~~vg~A~GlA~~G-~~pi~~i~~~~F 121 (372)
.+.+.|.+.+. ++.+ +..|.+....|. ...+.-.. |.+|++.|- . -...++.|.|++++. -++++.+ .++.
T Consensus 376 ~~~~~l~~~l~--~~~i-i~~d~g~~~~~~-~~~~~~~~-p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i-~GDG 449 (574)
T PRK06882 376 QVVEAIYRLTN--GDAY-VASDVGQHQMFA-ALHYPFDK-PRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCV-TGDG 449 (574)
T ss_pred HHHHHHHhhcC--CCeE-EEecCchhHHHH-HHhccccC-CCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEE-Ecch
Confidence 45566666553 3333 345554111121 22233344 788888642 3 333577888888763 3444443 4444
Q ss_pred H-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC---------CCCCC---C-C-hhHH-HHHcCCCCcEEEee
Q 017410 122 I-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG---------HGGHY---H-S-QSPE-AFFCHVPGLKVVIP 184 (372)
Q Consensus 122 ~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g---------~~G~~---H-s-~~d~-a~l~~iP~l~V~~P 184 (372)
. +-....+.. +... ++ |++++ .-.+..+ .++.. + . ..|. .+.+++ |+.-+..
T Consensus 450 ~f~~~~~eL~t-a~~~--------~l-pv~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v 518 (574)
T PRK06882 450 SIQMNIQELST-AKQY--------DI-PVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAY-GHVGIQI 518 (574)
T ss_pred hhhccHHHHHH-HHHh--------CC-CeEEEEEECchhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHC-CCeEEEe
Confidence 2 222333332 3322 35 66554 2233221 11111 1 0 1134 344444 6677788
Q ss_pred CCHHHHHHHHHHhHhC-CCcEEE
Q 017410 185 RSPRQAKGLLLSCIRD-PNPVVF 206 (372)
Q Consensus 185 sd~~e~~~~l~~a~~~-~~Pv~i 206 (372)
.+..|+..+++++++. ++|++|
T Consensus 519 ~~~~eL~~al~~a~~~~~~p~li 541 (574)
T PRK06882 519 DTPDELEEKLTQAFSIKDKLVFV 541 (574)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEE
Confidence 9999999999999986 889998
No 186
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=63.04 E-value=96 Score=32.79 Aligned_cols=110 Identities=12% Similarity=0.022 Sum_probs=61.2
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG 159 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g 159 (372)
|.+|++.|- +=...+..|.|+++.- -+|++.+ .++.. +-....+- .+... ++ |++++ .-.+..+
T Consensus 413 p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i-~GDG~f~m~~~eL~-Ta~r~--------~l-pv~ivV~NN~~y~ 481 (574)
T PRK06466 413 PNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACV-TGEGSIQMNIQELS-TCLQY--------GL-PVKIINLNNGALG 481 (574)
T ss_pred CCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEE-EcchhhhccHHHHH-HHHHh--------CC-CeEEEEEeCCccH
Confidence 788887642 1223456688877762 4566664 55552 22222222 12222 35 65554 2222211
Q ss_pred ---------CCCC---CC-Ch-hHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q 017410 160 ---------HGGH---YH-SQ-SPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (372)
Q Consensus 160 ---------~~G~---~H-s~-~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-~~Pv~i 206 (372)
.++. .. .. -|. .+.+.+ |..-+...+..|+..+++++++. ++|++|
T Consensus 482 ~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~p~lI 543 (574)
T PRK06466 482 MVRQWQDMQYEGRHSHSYMESLPDFVKLAEAY-GHVGIRITDLKDLKPKLEEAFAMKDRLVFI 543 (574)
T ss_pred HHHHHHHHhcCCceeecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 1111 11 11 133 444554 67778889999999999999986 999998
No 187
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=63.03 E-value=18 Score=29.40 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
+....+.+|.+.|++.|++.+++|+.. .|++.+.|.+.+++.+
T Consensus 7 ~~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 7 KNCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 445678889999999999999999887 8999999988887544
No 188
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=62.05 E-value=82 Score=33.55 Aligned_cols=147 Identities=14% Similarity=0.101 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecch--hHHHHHHHHHHHHhcC-CeeEEEeccccc
Q 017410 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADY 121 (372)
Q Consensus 45 a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F 121 (372)
.+.+.|.+.+.. .+. ++..|.+....+. ...+.-.. |.+|+..+- +=...+..|.|++++. -|+++.+ -++.
T Consensus 384 ~~~~~l~~~l~~-~d~-iv~~d~G~~~~~~-~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i-~GDG 458 (595)
T PRK09107 384 YAIQRLYELTKG-RDT-YITTEVGQHQMWA-AQFFGFEE-PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDI-AGDA 458 (595)
T ss_pred HHHHHHHHhCCC-CCe-EEEECCcHHHHHH-HHhcccCC-CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEE-EcCc
Confidence 355555555542 233 3445544111111 22232333 788887542 2223556777777764 4666664 4554
Q ss_pred H-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC---------CCC----CCCC-hhHH-HHHcCCCCcEEEee
Q 017410 122 I-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG---------HGG----HYHS-QSPE-AFFCHVPGLKVVIP 184 (372)
Q Consensus 122 ~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g---------~~G----~~Hs-~~d~-a~l~~iP~l~V~~P 184 (372)
. +-....|- .+... ++ |++++ .-.|..+ .++ .+.. .-|. .+.+.+ |..-+.-
T Consensus 459 ~f~m~~~EL~-Ta~r~--------~l-pvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v 527 (595)
T PRK09107 459 SIQMCIQEMS-TAVQY--------NL-PVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAY-GAVGIRC 527 (595)
T ss_pred hhhccHHHHH-HHHHh--------CC-CeEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHC-CCeEEEE
Confidence 2 22222232 23322 35 65554 3333221 111 1111 1234 455555 7777788
Q ss_pred CCHHHHHHHHHHhHhCCCcEEEE
Q 017410 185 RSPRQAKGLLLSCIRDPNPVVFF 207 (372)
Q Consensus 185 sd~~e~~~~l~~a~~~~~Pv~ir 207 (372)
.++.|+..+++.++..++|++|-
T Consensus 528 ~~~~el~~al~~a~~~~~p~lIe 550 (595)
T PRK09107 528 EKPGDLDDAIQEMIDVDKPVIFD 550 (595)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999993
No 189
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=61.88 E-value=68 Score=28.88 Aligned_cols=68 Identities=10% Similarity=0.238 Sum_probs=45.2
Q ss_pred eChhHHHHHHHHHHHHh-cCCceeEEeecccCCCCHHHH---------------HHHHhcCCeEEEEcCCCCCCcHHHHH
Q 017410 246 WGAQLSIMEQACLDAEK-EGISCELIDLKTLIPWDKETV---------------EASVRKTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~i~P~d~~~l---------------~~~~~~~~~vivvEe~~~~GGlg~~i 309 (372)
+|++...|..+++.+++ .|.++++++++...| .+.. .+.+..++.|++- -....|++...+
T Consensus 12 ~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g-sPty~g~~~~~l 88 (200)
T PRK03767 12 YGHIETMAEAVAEGAREVAGAEVTIKRVPETVP--EEVAKKAGGKTDQAAPVATPDELADYDAIIFG-TPTRFGNMAGQM 88 (200)
T ss_pred CCHHHHHHHHHHHHHhhcCCcEEEEEeccccCC--HHHHHhcCCCcccCCCccCHHHHHhCCEEEEE-ecccCCCchHHH
Confidence 45566677778888887 899999999875433 2111 3445667665544 333478888888
Q ss_pred HHHHHHh
Q 017410 310 SASILER 316 (372)
Q Consensus 310 ~~~l~~~ 316 (372)
...+...
T Consensus 89 k~fld~~ 95 (200)
T PRK03767 89 RNFLDQT 95 (200)
T ss_pred HHHHHHh
Confidence 8777654
No 190
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=61.76 E-value=1.2e+02 Score=26.97 Aligned_cols=29 Identities=7% Similarity=-0.015 Sum_probs=25.9
Q ss_pred CcEEEeeCCHHHHHHHHHHhHh-CCCcEEE
Q 017410 178 GLKVVIPRSPRQAKGLLLSCIR-DPNPVVF 206 (372)
Q Consensus 178 ~l~V~~Psd~~e~~~~l~~a~~-~~~Pv~i 206 (372)
+...+...++.|+..+++++++ .++|++|
T Consensus 140 ~~~~~~v~~~~el~~al~~a~~~~~~p~li 169 (183)
T cd02005 140 GGLSFRVKTEGELDEALKDALFNRDKLSLI 169 (183)
T ss_pred cccEEEecCHHHHHHHHHHHHhcCCCcEEE
Confidence 4677788999999999999998 7899998
No 191
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=61.21 E-value=50 Score=26.36 Aligned_cols=68 Identities=7% Similarity=0.093 Sum_probs=46.7
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-----cCCeEEEEcCCCCCCcHHHHH
Q 017410 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-----KTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 238 g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-----~~~~vivvEe~~~~GGlg~~i 309 (372)
.++++|++. +....|.+|.+.|++.|++..++++.. .|- ...+.+.+. .+=+.|++.... .||+....
T Consensus 7 ~~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~-~~~~~~~l~~~tg~~tvP~Vfi~g~~-iGG~ddl~ 79 (99)
T TIGR02189 7 EKAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPA-GKDIENALSRLGCSPAVPAVFVGGKL-VGGLENVM 79 (99)
T ss_pred cCCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-Ccc-HHHHHHHHHHhcCCCCcCeEEECCEE-EcCHHHHH
Confidence 356777776 667888999999999999999999875 222 233333343 233667787664 79986644
No 192
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=60.81 E-value=1e+02 Score=32.51 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=61.0
Q ss_pred CCceEecc-hh-HHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC
Q 017410 85 KSRVFNTP-LC-EQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG 159 (372)
Q Consensus 85 p~r~i~~G-Ia-E~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g 159 (372)
|.+|+..+ .. =...+..|.|++++. -++++.+ -++.. +-....+- .+... ++ |++++ .-.+..|
T Consensus 398 ~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i-~GDGsf~m~~~eL~-Ta~~~--------~l-pv~ivV~NN~~~g 466 (574)
T PRK09124 398 KRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVAL-SGDGGFSMLMGDFL-SLVQL--------KL-PVKIVVFNNSVLG 466 (574)
T ss_pred CCeEEecCCcccccchHHHHHHHHHhCCCCeEEEE-ecCcHHhccHHHHH-HHHHh--------CC-CeEEEEEeCCccc
Confidence 67888642 11 123567888888763 4666664 55552 22222232 22222 34 55443 2222111
Q ss_pred -------CCCC--CC---ChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 160 -------HGGH--YH---SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 160 -------~~G~--~H---s~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
..+. .. ..-|. .+...+ |+.-+...++.|+...++++++.++|++|
T Consensus 467 ~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (574)
T PRK09124 467 FVAMEMKAGGYLTDGTDLHNPDFAAIAEAC-GITGIRVEKASELDGALQRAFAHDGPALV 525 (574)
T ss_pred cHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0111 00 01133 344444 77778889999999999999999999999
No 193
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=60.78 E-value=37 Score=25.28 Aligned_cols=56 Identities=20% Similarity=0.118 Sum_probs=35.0
Q ss_pred cEEEEEeCh-hHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcC
Q 017410 240 DITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHE 298 (372)
Q Consensus 240 di~ii~~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe 298 (372)
++.|++.+. ....|++.+..|+++|+.+.+.... +.++ +.+..+-+ +...++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~-~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLK-KQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHH-HHHHHHHHcCCCEEEEEcH
Confidence 577777776 3567999999999999988764422 3342 33433322 2345666654
No 194
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=60.30 E-value=1.2e+02 Score=32.39 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=29.5
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+...+ |+.-+.-.++.|+...++.+++.++|++|
T Consensus 520 ~~A~a~-G~~g~~V~~~~el~~al~~a~~~~~p~lI 554 (616)
T PRK07418 520 KLAEAF-GVKGMVISERDQLKDAIAEALAHDGPVLI 554 (616)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 344555 67778889999999999999999999998
No 195
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=60.01 E-value=1.4e+02 Score=31.12 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=29.3
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.+ |+..+...+..|+..+++.+++.++|++|
T Consensus 491 ~~a~~~-G~~~~~v~~~~~l~~al~~a~~~~~p~li 525 (530)
T PRK07092 491 ALARGY-GCEAVRVSDAAELADALARALAADGPVLV 525 (530)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 344544 77788888999999999999999999998
No 196
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=59.74 E-value=38 Score=25.55 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=44.3
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcCCCCCCcHHHHHHHH
Q 017410 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGAEISAS 312 (372)
Q Consensus 237 ~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe~~~~GGlg~~i~~~ 312 (372)
+..+++|.+ -+....+.+|.+.|++.|++.+.+++..- -+.+.+.+... .+=.+++++.. ..||+. +|..+
T Consensus 6 ~~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~~--~~~~~~~~~~g~~~vP~i~i~g~-~igG~~-~l~~~ 77 (79)
T TIGR02190 6 KPESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGND--ARGRSLRAVTGATTVPQVFIGGK-LIGGSD-ELEAY 77 (79)
T ss_pred CCCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCCC--hHHHHHHHHHCCCCcCeEEECCE-EEcCHH-HHHHH
Confidence 445666655 47778899999999999999999997541 12233433211 22245666554 578884 44444
No 197
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=59.69 E-value=46 Score=35.39 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=28.9
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i 206 (372)
.+.+++ |..-..-.++.|++.+++.+++ .++|++|
T Consensus 512 ~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lI 550 (588)
T TIGR01504 512 KVAEGL-GCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVV 550 (588)
T ss_pred HHHHHC-CCEEEEECCHHHHHHHHHHHHhhcccCCCcEEE
Confidence 455555 6667777999999999999995 6899999
No 198
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=59.38 E-value=91 Score=32.92 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=29.9
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.+ |+.-+...+.+|+..+++++++.++|++|
T Consensus 509 ~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 543 (571)
T PRK07710 509 KLAEAY-GIKGVRIDDELEAKEQLQHAIELQEPVVI 543 (571)
T ss_pred HHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 344454 78888899999999999999999999999
No 199
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=58.61 E-value=23 Score=25.92 Aligned_cols=66 Identities=17% Similarity=0.120 Sum_probs=41.4
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhc--CCeEEEEcCCCCCCcHHHHH
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK--TGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~--~~~vivvEe~~~~GGlg~~i 309 (372)
++|.+. +.-..+.+|.+.|++.|++...+++..- |-..+.+.+.... +=+.++++... .||+.+..
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~~-igg~~~~~ 69 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDVH-IGGCDDLY 69 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCEE-EeChHHHH
Confidence 444443 5567888899999999999999998753 1111223222221 23567787764 68886644
No 200
>PRK10853 putative reductase; Provisional
Probab=58.60 E-value=20 Score=29.88 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC
Q 017410 249 QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (372)
Q Consensus 249 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (372)
....+.+|.+-|++.|++++++|+.. .|++.+.|.+.+++.
T Consensus 9 ~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 9 NCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDEL 49 (118)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHc
Confidence 34678889999999999999999887 899999988877644
No 201
>PRK05858 hypothetical protein; Provisional
Probab=58.42 E-value=78 Score=33.18 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=29.6
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.+ |..-....+++|+..+++.+++.++|++|
T Consensus 491 ~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (542)
T PRK05858 491 EVVRAL-GGHGELVTVPAELGPALERAFASGVPYLV 525 (542)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCcEEE
Confidence 344444 56788999999999999999999999999
No 202
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=57.59 E-value=95 Score=25.71 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=45.6
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEEEecccccccccccCCCCCcccc---CCceEEeeeCCcEEEEEeChhHHHHHHH
Q 017410 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLP---LSEAEVIREGSDITLVGWGAQLSIMEQA 256 (372)
Q Consensus 180 ~V~~Psd~~e~~~~l~~a~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~---~Gk~~v~~~g~di~ii~~G~~~~~a~~A 256 (372)
.|+.|.+.+|+..++++|.+++.|+.++-...-.-. .........+. +.+...+.+....+.+..|.......+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~--~~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~ 80 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTG--QSSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEA 80 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSS--TTSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCccc--ccccCCcEEEeeccccccccccccceeEEEeccccchhcccc
Confidence 489999999999999999999999999543321110 00101111111 2222223344667777778777766554
Q ss_pred H
Q 017410 257 C 257 (372)
Q Consensus 257 a 257 (372)
.
T Consensus 81 l 81 (139)
T PF01565_consen 81 L 81 (139)
T ss_dssp H
T ss_pred c
Confidence 3
No 203
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=56.78 E-value=59 Score=32.17 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=18.3
Q ss_pred CCCcEEEeeCCHHHH----HHHHHHhHhCCCcEEEEe
Q 017410 176 VPGLKVVIPRSPRQA----KGLLLSCIRDPNPVVFFE 208 (372)
Q Consensus 176 iP~l~V~~Psd~~e~----~~~l~~a~~~~~Pv~ir~ 208 (372)
+|++.| .-.|..++ +.+++.+.+.++|++|-.
T Consensus 208 ~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIev 243 (341)
T TIGR03181 208 IPGVQV-DGNDVLAVYAVTKEAVERARSGGGPTLIEA 243 (341)
T ss_pred CCEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 555543 33343333 555666666789999943
No 204
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=56.77 E-value=2.1e+02 Score=30.35 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=29.7
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.+ |..-..-.+++|+...++.+++.++|.+|
T Consensus 516 ~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 550 (585)
T CHL00099 516 KLAEAY-GIKGLRIKSRKDLKSSLKEALDYDGPVLI 550 (585)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 455555 67777889999999999999999999999
No 205
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=56.72 E-value=1e+02 Score=32.56 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhH-HHHhCCCceEecch-hHH-HHHHHHHHHHhcCCeeEEEeccccc
Q 017410 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGL-ADRFGKSRVFNTPL-CEQ-GIVGFAIGLAAMGNRAIAEIQFADY 121 (372)
Q Consensus 45 a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~-~~~~~p~r~i~~GI-aE~-~~vg~A~GlA~~G~~pi~~i~~~~F 121 (372)
.+.+.|.+.+...++.+++. |.+ .+......+ .-.. |.++++.+- .=. ..+..|.|++++--++++.+ -++.
T Consensus 377 ~~~~~l~~~l~~~~d~iv~~-~~~--~~~~~~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~la~~~~vv~i-~GDG 451 (569)
T PRK09259 377 NALGAIRDVLKENPDIYLVN-EGA--NTLDLARNIIDMYK-PRHRLDCGTWGVMGIGMGYAIAAAVETGKPVVAI-EGDS 451 (569)
T ss_pred HHHHHHHHHhCCCCCEEEEe-Cch--HHHHHHHHhcccCC-CCceEeCCCCccccccHHHHHHHHhcCCCcEEEE-ecCc
Confidence 35567777775445666544 422 111001111 1233 778887643 212 25567777777755666664 4554
Q ss_pred H-HHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCC-C------C-CC---CCCC-hhHH-HHHcCCCCcEEEeeC
Q 017410 122 I-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAV-G------H-GG---HYHS-QSPE-AFFCHVPGLKVVIPR 185 (372)
Q Consensus 122 ~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~-g------~-~G---~~Hs-~~d~-a~l~~iP~l~V~~Ps 185 (372)
. +-....+. -+... ++ |++++ .-+|.. + . .. .... .-|. .+.+++ |..-+.-.
T Consensus 452 ~f~m~~~EL~-Ta~r~--------~l-pi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~ 520 (569)
T PRK09259 452 AFGFSGMEVE-TICRY--------NL-PVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAF-GGVGYNVT 520 (569)
T ss_pred cccccHHHHH-HHHHc--------CC-CEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHC-CCeEEEEC
Confidence 2 22222232 23322 34 65554 223321 0 0 01 1110 1133 344544 56677789
Q ss_pred CHHHHHHHHHHhHhCCCcEEE
Q 017410 186 SPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 186 d~~e~~~~l~~a~~~~~Pv~i 206 (372)
++.|+...+++++..++|++|
T Consensus 521 ~~~el~~al~~a~~~~~p~lI 541 (569)
T PRK09259 521 TPDELRHALTEAIASGKPTLI 541 (569)
T ss_pred CHHHHHHHHHHHHhCCCCEEE
Confidence 999999999999999999998
No 206
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=56.49 E-value=1.4e+02 Score=31.55 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=28.2
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhH--hCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCI--RDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~--~~~~Pv~i 206 (372)
.+.+.+ |..-..-.+..|+...+++++ +.++|++|
T Consensus 491 ~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~p~li 527 (575)
T TIGR02720 491 KIAEGV-GAVGFRVNKIEQLPAVFEQAKAIKQGKPVLI 527 (575)
T ss_pred HHHHHC-CCEEEEeCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 344544 566667799999999999999 78999998
No 207
>PRK06154 hypothetical protein; Provisional
Probab=56.39 E-value=1.7e+02 Score=30.85 Aligned_cols=110 Identities=12% Similarity=0.013 Sum_probs=62.1
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG 159 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g 159 (372)
|.+|+..+- +=...+..|.|++++- -++++.+ .++.. +-....+- .+... ++ |++++ .-.+.++
T Consensus 421 p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i-~GDG~f~m~~~EL~-Ta~r~--------~l-pi~~vV~NN~~yg 489 (565)
T PRK06154 421 PGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINL-WGDAAFGMTGMDFE-TAVRE--------RI-PILTILLNNFSMG 489 (565)
T ss_pred CCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEE-EcchHHhccHHHHH-HHHHh--------CC-CeEEEEEECCccc
Confidence 788987542 1223556777777763 4666664 55552 33322232 22222 35 66554 3333222
Q ss_pred C-C------CCCCC----hhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHh---CCCcEEE
Q 017410 160 H-G------GHYHS----QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIR---DPNPVVF 206 (372)
Q Consensus 160 ~-~------G~~Hs----~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~---~~~Pv~i 206 (372)
. . +..+. .-|. ++...+ |+.-+.-.++.|+..+++.+++ .++|++|
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lI 550 (565)
T PRK06154 490 GYDKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALL 550 (565)
T ss_pred eeehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEE
Confidence 0 0 11110 1144 455555 6778888999999999999996 5789998
No 208
>PRK08611 pyruvate oxidase; Provisional
Probab=56.13 E-value=1.6e+02 Score=31.12 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=29.4
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+++ |..-+...+++|+...++++++.++|++|
T Consensus 491 ~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (576)
T PRK08611 491 KFAEAC-GGKGYRVEKAEELDPAFEEALAQDKPVII 525 (576)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 344444 66778889999999999999999999999
No 209
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=56.11 E-value=1.1e+02 Score=32.22 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=29.1
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~ir 207 (372)
.+.+.+ |+....-.+++|+...++++++.++|++|-
T Consensus 499 ~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li~ 534 (557)
T PRK08199 499 ALARAY-GGHGETVERTEDFAPAFERALASGKPALIE 534 (557)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 344444 666777789999999999999999999983
No 210
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=55.74 E-value=1.1e+02 Score=32.28 Aligned_cols=108 Identities=18% Similarity=0.184 Sum_probs=60.0
Q ss_pred ceEec-ch-hHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC--
Q 017410 87 RVFNT-PL-CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-- 159 (372)
Q Consensus 87 r~i~~-GI-aE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g-- 159 (372)
+|+.. |. +=...++.|.|++++. .++++++ .++.. +-....+. .+... ++ |++++ .-.+..|
T Consensus 429 ~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i-~GDGsf~~~~~el~-ta~~~--------~l-~~~~vv~NN~~~g~~ 497 (578)
T PRK06112 429 RFLTPRGLAGLGWGVPMAIGAKVARPGAPVICL-VGDGGFAHVWAELE-TARRM--------GV-PVTIVVLNNGILGFQ 497 (578)
T ss_pred eEECCCCccccccHHHHHHHHHhhCCCCcEEEE-EcchHHHhHHHHHH-HHHHh--------CC-CeEEEEEeCCccCCE
Confidence 56653 22 1245677888888763 4566664 55553 22222232 23332 34 65554 2222211
Q ss_pred ---C---CCCCCC-----hhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 160 ---H---GGHYHS-----QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 160 ---~---~G~~Hs-----~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
. .+..+. .-|. .+.+.+ |...+.-.++.|++..++++++.++|++|
T Consensus 498 ~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 555 (578)
T PRK06112 498 KHAETVKFGTHTDACHFAAVDHAAIARAC-GCDGVRVEDPAELAQALAAAMAAPGPTLI 555 (578)
T ss_pred EeccccccCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 011111 1133 444554 66677788999999999999999999999
No 211
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=55.72 E-value=80 Score=33.59 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcC------CeeEEEecccccH-H--HHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCC
Q 017410 96 QGIVGFAIGLAAMG------NRAIAEIQFADYI-F--PAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYH 165 (372)
Q Consensus 96 ~~~vg~A~GlA~~G------~~pi~~i~~~~F~-~--ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~H 165 (372)
.+.+++|.|+|++- .++++++ .++.- + ..++.+. .++.. +. |++++ ..++.. -++.+.
T Consensus 120 G~gl~~AvG~A~a~~~~~~~~~~v~~i-~GDG~l~eG~~~Eal~-~A~~~--------~~-nli~IvdnN~~~-i~~~~~ 187 (580)
T PRK05444 120 STSISAALGMAKARDLKGGEDRKVVAV-IGDGALTGGMAFEALN-NAGDL--------KS-DLIVILNDNEMS-ISPNVG 187 (580)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEE-EcccccccCHHHHHHH-HHHhh--------CC-CEEEEEECCCCc-CCCcch
Confidence 34456777776642 3456654 55552 2 5556554 24422 23 66665 444432 122221
Q ss_pred ------ChhHH-HHHcCCCCcEEEe---eCCHHHHHHHHHHhHhCCCcEEEEeccc
Q 017410 166 ------SQSPE-AFFCHVPGLKVVI---PRSPRQAKGLLLSCIRDPNPVVFFEPKW 211 (372)
Q Consensus 166 ------s~~d~-a~l~~iP~l~V~~---Psd~~e~~~~l~~a~~~~~Pv~ir~p~~ 211 (372)
...+. ..++.. |+.++. ..|..++...++.+.+.++|++|-....
T Consensus 188 ~~~~~~~~~~~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~T~ 242 (580)
T PRK05444 188 ALSNYLARLRSSTLFEEL-GFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVVTK 242 (580)
T ss_pred hhhhhhccccHHHHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 11222 344543 666554 4899999999998888889999865443
No 212
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=55.47 E-value=1.6e+02 Score=31.02 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=29.7
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+++ |..-+...++.|+...+.++++.++|.+|
T Consensus 506 ~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 540 (572)
T PRK06456 506 KLAEAF-GALGFNVTTYEDIEKSLKSAIKEDIPAVI 540 (572)
T ss_pred HHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 455555 67778889999999999999999999998
No 213
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=55.41 E-value=92 Score=33.28 Aligned_cols=110 Identities=14% Similarity=0.045 Sum_probs=63.4
Q ss_pred CCceEecch-hHHH-HHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC
Q 017410 85 KSRVFNTPL-CEQG-IVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG 159 (372)
Q Consensus 85 p~r~i~~GI-aE~~-~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g 159 (372)
|.+|++.+- .-.+ .++.|.|++++. -++++.+ .++.. +.....+. .+... ++ |++++ .-.+..+
T Consensus 437 p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~eL~-Ta~~~--------~l-pv~ivV~NN~~~g 505 (612)
T PRK07789 437 PRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAI-DGDGCFQMTNQELA-TCAIE--------GI-PIKVALINNGNLG 505 (612)
T ss_pred CCeEEcCCCcccccchhhhHHhhhccCCCCcEEEE-EcchhhhccHHHHH-HHHHc--------CC-CeEEEEEECCchH
Confidence 788987653 3333 678888888873 5666664 55552 22222222 22322 24 54443 2222211
Q ss_pred ---------CCCC--------CCCh-hHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q 017410 160 ---------HGGH--------YHSQ-SPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (372)
Q Consensus 160 ---------~~G~--------~Hs~-~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-~~Pv~i 206 (372)
.++. .|.. -|. .+.+.+ |..-+.-.+.+|+..+++.+++. ++|++|
T Consensus 506 ~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~p~lI 571 (612)
T PRK07789 506 MVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAY-GCVGLRCEREEDVDAVIEKARAINDRPVVI 571 (612)
T ss_pred HHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 1110 1111 133 455555 67777889999999999999985 899999
No 214
>PRK10026 arsenate reductase; Provisional
Probab=55.20 E-value=36 Score=29.40 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
+....+.+|.+-|++.|++++++|+.. .|++.+.|.+.+++.+
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADMG 52 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhCC
Confidence 455778899999999999999999988 8999999888887544
No 215
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=55.18 E-value=26 Score=35.36 Aligned_cols=53 Identities=19% Similarity=0.372 Sum_probs=43.8
Q ss_pred cEEEE---EeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEE
Q 017410 240 DITLV---GWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLI 295 (372)
Q Consensus 240 di~ii---~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~viv 295 (372)
+++|+ .||++-..|...++-|.+.|+++.++++..- |.+.|.+.+.+++.+++
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv 303 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV 303 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEEE
Confidence 45555 5788888899999999999999999999886 78888888888877653
No 216
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=54.55 E-value=31 Score=28.17 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
+....+.+|.+.|++.|+++..+|+.. .|++.+.|.+.++..+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~~ 49 (112)
T cd03034 7 PRCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKLG 49 (112)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHcC
Confidence 445678889999999999999999887 8999998888777554
No 217
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=54.50 E-value=1.1e+02 Score=32.58 Aligned_cols=110 Identities=12% Similarity=0.088 Sum_probs=63.4
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG 159 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g 159 (372)
|.+|+..+- +=...+..|.|++++- -++++.+ .++.. +.....|- .+... ++ |++++ .-.+..+
T Consensus 427 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i-~GDGsf~m~~~eL~-Ta~r~--------~l-pviivV~NN~~~~ 495 (587)
T PRK06965 427 PRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCI-TGEGSIQMCIQELS-TCLQY--------DT-PVKIISLNNRYLG 495 (587)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchhhhcCHHHHH-HHHHc--------CC-CeEEEEEECCcch
Confidence 789997643 4555677888888873 3555554 45542 22222222 22222 35 65554 2222221
Q ss_pred ---------CCCCC-CC----hhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q 017410 160 ---------HGGHY-HS----QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (372)
Q Consensus 160 ---------~~G~~-Hs----~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-~~Pv~i 206 (372)
.++.. +. .-|. .+.+++ |..-+.-.+..|+...++.|++. ++|++|
T Consensus 496 ~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~li 557 (587)
T PRK06965 496 MVRQWQEIEYSKRYSHSYMDALPDFVKLAEAY-GHVGMRIEKTSDVEPALREALRLKDRTVFL 557 (587)
T ss_pred HHHHHHHHhcCCCccccCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 11111 11 1133 344554 67788889999999999999984 889999
No 218
>PRK10638 glutaredoxin 3; Provisional
Probab=54.47 E-value=32 Score=26.11 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=40.1
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhc-CCeEEEEcCCCCCCcHHHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-TGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~-~~~vivvEe~~~~GGlg~~i 309 (372)
+++|.+. +....+.+|.+.|++.|++..++++..-... .+.+.+.-.. +=++++++.. ..||+.+..
T Consensus 3 ~v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~-~~~l~~~~g~~~vP~i~~~g~-~igG~~~~~ 70 (83)
T PRK10638 3 NVEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDGDAAK-REEMIKRSGRTTVPQIFIDAQ-HIGGCDDLY 70 (83)
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCE-EEeCHHHHH
Confidence 3555554 4456888899999999999999987541111 1233332111 2255666654 579985543
No 219
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=54.45 E-value=73 Score=24.17 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=44.3
Q ss_pred EEEEEeChhHHHHHHHHHHHHh-----cCCceeEEeecccCCCCHHHHHHHHh---cCCeEEEEcCCCCCCcHHHHHHHH
Q 017410 241 ITLVGWGAQLSIMEQACLDAEK-----EGISCELIDLKTLIPWDKETVEASVR---KTGRLLISHEAPVTGGFGAEISAS 312 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~-----~Gi~v~vi~~~~i~P~d~~~l~~~~~---~~~~vivvEe~~~~GGlg~~i~~~ 312 (372)
++|.+. +.-..+.+|.+.|++ .|+....+|+.. .+...+.+.+... .+=+.|+++... .||+.+ +.++
T Consensus 3 v~iy~~-~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~~-igg~~~-~~~~ 78 (85)
T PRK11200 3 VVIFGR-PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQKH-IGGCTD-FEAY 78 (85)
T ss_pred EEEEeC-CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCEE-EcCHHH-HHHH
Confidence 444443 445677777777777 799999999875 3333455655443 233567776654 788855 4445
Q ss_pred HHH
Q 017410 313 ILE 315 (372)
Q Consensus 313 l~~ 315 (372)
+.+
T Consensus 79 ~~~ 81 (85)
T PRK11200 79 VKE 81 (85)
T ss_pred HHH
Confidence 544
No 220
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=54.41 E-value=58 Score=24.71 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=37.0
Q ss_pred cEEEEEeCh----hHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 240 DITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 240 di~ii~~G~----~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
++.|+..+. ....+++.++.|+++|+.+.+-. .. +.+....-.....+...++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHHHHHHHhCCCCEEEEECCC
Confidence 466777664 56788888999999999887643 22 455444322223345677788764
No 221
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=54.23 E-value=23 Score=26.15 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHH
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGA 307 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~ 307 (372)
..-..+.+|.+.|++.|+..+.+|+.. .|-..+.+.+.=..+=.++++++....||+-.
T Consensus 7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 7 NNCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHcCCcccCEEEECCCcEEeccCH
Confidence 334678888888999999999999875 33223333321111235577755434677643
No 222
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=54.21 E-value=26 Score=29.58 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (372)
.....+.+|.+.|+++|++++++|+.- .|++.+.|.+.+++.
T Consensus 9 p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 9 PGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGNK 50 (126)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHHc
Confidence 345778899999999999999999887 899999888777653
No 223
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=54.12 E-value=64 Score=24.66 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=38.2
Q ss_pred cEEEEEeCh----hHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCC
Q 017410 240 DITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAP 300 (372)
Q Consensus 240 di~ii~~G~----~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~ 300 (372)
.++|+..+. ....+++.++.|+++|+++.+ +.+. +.+....=.....+...++++-+..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVKFADADLIGIPYRIVVGKKS 65 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccchhHHHhcCCCEEEEECCch
Confidence 366777664 457788999999999999976 4443 4554442222234567777776553
No 224
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=53.97 E-value=1.1e+02 Score=25.12 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=50.5
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCC--HHHHHHHHhc---CCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWD--KETVEASVRK---TGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d--~~~l~~~~~~---~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
+++|++.|......+++++.+--+.-++..+++..=...+ .+.+.+.+++ .+.++++-|= .||--..++..+.
T Consensus 3 ~ili~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl--~GGSp~n~a~~~~ 80 (116)
T TIGR00824 3 AIIISGHGQAAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDI--FGGSPYNAAARII 80 (116)
T ss_pred EEEEEecHHHHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeC--CCCCHHHHHHHHH
Confidence 4889999999999999999875333346666643322121 1223444443 3567777665 3665555554332
Q ss_pred HhccccCCCcEEEEeccCCC
Q 017410 315 ERCFLRLEAPVARVCGLDTP 334 (372)
Q Consensus 315 ~~~~~~l~~~v~~ig~~~~~ 334 (372)
.. ...+.-+.|-+.|
T Consensus 81 ~~-----~~~~~vIsG~NLp 95 (116)
T TIGR00824 81 VD-----KPHMDVIAGVNLP 95 (116)
T ss_pred hh-----cCCEEEEEecCHH
Confidence 21 2345667776654
No 225
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=53.59 E-value=33 Score=28.17 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
+....+.+|.+.|++.|+++..+|+.. .|+..+.|.+.++..+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 7 PRCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKLG 49 (114)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHcC
Confidence 445778889999999999999999987 8999999888877653
No 226
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=53.02 E-value=2.3e+02 Score=27.63 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=27.6
Q ss_pred HHHcCCCCcEEE---eeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVV---IPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~---~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+..+. |...+ ...++.|+..++++|+++++|++|
T Consensus 161 ~lA~a~-G~~~va~~~v~~~~eL~~ai~~A~~~~GpalI 198 (301)
T PRK05778 161 ALALAA-GATFVARSFAGDVKQLVELIKKAISHKGFAFI 198 (301)
T ss_pred HHHHHC-CCCEEEEeccCCHHHHHHHHHHHHhCCCCEEE
Confidence 344443 44443 689999999999999999999998
No 227
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=52.86 E-value=45 Score=25.72 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=38.6
Q ss_pred cEEEEEeCh----hHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHH-hcCCeEEEEcCC
Q 017410 240 DITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV-RKTGRLLISHEA 299 (372)
Q Consensus 240 di~ii~~G~----~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~-~~~~~vivvEe~ 299 (372)
+++|++.|. ....|.+.++.|++.|+.+.+-+ .-..+. +.+..+- .+..-++++-+.
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~-k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLG-KQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHH-HHHHHHHHTTESEEEEEEHH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchh-HHHHHHhhcCCeEEEEECch
Confidence 467888888 45778999999999998888776 334443 3344443 345666766543
No 228
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=52.85 E-value=50 Score=34.78 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=25.5
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 178 GLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 178 ~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
|..-+...+++|+...++++++.++|++|
T Consensus 516 G~~~~~V~~~~eL~~al~~a~~~~~p~lI 544 (568)
T PRK07449 516 GLEYHRPETWAELEEALADALPTPGLTVI 544 (568)
T ss_pred CCCccCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 45566779999999999999999999998
No 229
>PRK09004 FMN-binding protein MioC; Provisional
Probab=52.73 E-value=1.3e+02 Score=25.80 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=53.1
Q ss_pred EEEeChhHHHHHHHHHHH----HhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHH---HHHHHHHHH
Q 017410 243 LVGWGAQLSIMEQACLDA----EKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFG---AEISASILE 315 (372)
Q Consensus 243 ii~~G~~~~~a~~Aa~~L----~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg---~~i~~~l~~ 315 (372)
.|-+||.++.+.+.++.| ++.|.++.++++.. .+ .+.+.+.++++--.+-.|-+- ..+.+.|.+
T Consensus 5 ~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~-----~~----~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~ 75 (146)
T PRK09004 5 TLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL-----LD----DLSASGLWLIVTSTHGAGDLPDNLQPFFEELQE 75 (146)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC-----HH----HhccCCeEEEEECCCCCCCCChhHHHHHHHHHh
Confidence 445788887777777655 44588998877532 22 244566677665444334332 334444444
Q ss_pred hccccC-CCcEEEEeccCCCcccccccCCCCcHHHHHHHHhCC
Q 017410 316 RCFLRL-EAPVARVCGLDTPFPLVFEPFYMPTKNKASCLESFK 357 (372)
Q Consensus 316 ~~~~~l-~~~v~~ig~~~~~~~~lle~~~l~~~~~~~~i~~~~ 357 (372)
... .+ ..++.-+|.-|..| ++|.--...+-+.+.+.|
T Consensus 76 ~~~-~l~g~~~aVfGlGds~Y----~~fc~~~~~ld~~l~~lG 113 (146)
T PRK09004 76 QKP-DLSQVRFAAIGIGSSEY----DTFCGAIDKLEQLLKAKG 113 (146)
T ss_pred cCC-CCCCCEEEEEeecCCCH----HHHhHHHHHHHHHHHHcC
Confidence 311 12 23444455444433 345555555555555544
No 230
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=52.18 E-value=54 Score=28.06 Aligned_cols=55 Identities=29% Similarity=0.303 Sum_probs=36.8
Q ss_pred EEEEEeChhH----HHHHHHHHHHHhc-C--CceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 241 ITLVGWGAQL----SIMEQACLDAEKE-G--ISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 241 i~ii~~G~~~----~~a~~Aa~~L~~~-G--i~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
++|+++|+.. .....+++.|++. + -.+++++..+.- ..+...+.+++++|+||--
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~----~~l~~~l~~~d~viiVDA~ 62 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG----LELLPYIEEADRLIIVDAV 62 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH----HHHHHHHhcCCEEEEEEcc
Confidence 3678888876 3456677777765 3 358888887742 3334556678888888873
No 231
>PRK11269 glyoxylate carboligase; Provisional
Probab=51.96 E-value=1.4e+02 Score=31.62 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=28.9
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i 206 (372)
.+.+++ |..-....+++|++..++++++ .++|++|
T Consensus 513 ~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~li 551 (591)
T PRK11269 513 KVAEGL-GCKAIRVFKPEDIAPALEQAKALMAEFRVPVVV 551 (591)
T ss_pred HHHHHC-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEE
Confidence 344555 6778888999999999999995 6899998
No 232
>PRK05899 transketolase; Reviewed
Probab=51.69 E-value=1.9e+02 Score=30.96 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=32.0
Q ss_pred HHHcCCCCcEEEeeC--CHHHHHHHHHHhHhCCCcEEEEecc
Q 017410 171 AFFCHVPGLKVVIPR--SPRQAKGLLLSCIRDPNPVVFFEPK 210 (372)
Q Consensus 171 a~l~~iP~l~V~~Ps--d~~e~~~~l~~a~~~~~Pv~ir~p~ 210 (372)
..++.+ |+.++.-. |..++..+++.+.+.++|++|-...
T Consensus 207 ~~~~a~-G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v~t 247 (624)
T PRK05899 207 KRFEAY-GWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIAKT 247 (624)
T ss_pred HHhccC-CCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 566666 88888777 8999999999999888999986543
No 233
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=49.92 E-value=88 Score=30.94 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=49.2
Q ss_pred eeEEEeccccc-H--HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCCC--hhHH-HHHcCCCCcEEEe
Q 017410 111 RAIAEIQFADY-I--FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYHS--QSPE-AFFCHVPGLKVVI 183 (372)
Q Consensus 111 ~pi~~i~~~~F-~--~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~Hs--~~d~-a~l~~iP~l~V~~ 183 (372)
+.||- .++- + ..+++.+. .++..+ +..+|++ +..+..- +|.+.. .+|+ .-+++. ||.|+.
T Consensus 145 ~vy~l--~GDGel~EG~~~EA~~-~A~~~~--------L~nLi~i~D~N~~q~-dg~~~~~~~~~~~~k~~a~-Gw~v~~ 211 (332)
T PF00456_consen 145 RVYVL--MGDGELQEGSVWEAAS-LAGHYK--------LDNLIVIYDSNGIQI-DGPTDIVFSEDIAKKFEAF-GWNVIE 211 (332)
T ss_dssp -EEEE--EEHHHHHSHHHHHHHH-HHHHTT---------TTEEEEEEEESEET-TEEGGGTHHSHHHHHHHHT-T-EEEE
T ss_pred eEEEE--ecCccccchhhHHHHH-HHHHhC--------CCCEEEEEecCCccc-CCCcccccchHHHHHHHHh-hhhhcc
Confidence 45554 4555 4 35666554 344332 3245554 5555432 333321 2344 456665 899988
Q ss_pred e---CCHHHHHHHHHHhHhC-CCcEEEEeccccc
Q 017410 184 P---RSPRQAKGLLLSCIRD-PNPVVFFEPKWLY 213 (372)
Q Consensus 184 P---sd~~e~~~~l~~a~~~-~~Pv~ir~p~~l~ 213 (372)
. -|.+++..++.+|-.. ++|++|...+..+
T Consensus 212 v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~TvkG 245 (332)
T PF00456_consen 212 VCDGHDVEAIYAAIEEAKASKGKPTVIIARTVKG 245 (332)
T ss_dssp EEETTBHHHHHHHHHHHHHSTSS-EEEEEEE-TT
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCceeecceEEe
Confidence 7 6777778888888766 8899997665543
No 234
>PRK12474 hypothetical protein; Provisional
Probab=49.53 E-value=2.3e+02 Score=29.47 Aligned_cols=35 Identities=6% Similarity=0.134 Sum_probs=29.0
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.+ |..-..-.++.|+..+++++++.++|++|
T Consensus 480 ~lA~a~-G~~~~rv~~~~eL~~al~~a~~~~~p~li 514 (518)
T PRK12474 480 KIAEGL-GVEASRATTAEEFSAQYAAAMAQRGPRLI 514 (518)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 344444 66777889999999999999999999998
No 235
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=49.52 E-value=46 Score=28.21 Aligned_cols=42 Identities=21% Similarity=0.148 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (372)
.....+.+|.+-|++.|++.+++|+.. .|++.+.|.+.++..
T Consensus 8 ~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKT 49 (132)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHh
Confidence 455778889999999999999999876 789999888887764
No 236
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=49.21 E-value=1.9e+02 Score=30.78 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=28.9
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 017410 175 HVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFE 208 (372)
Q Consensus 175 ~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~ir~ 208 (372)
.++...|..|.+-+|+..+++++++.++|.+|..
T Consensus 494 G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~v 527 (595)
T TIGR03336 494 GVEFVEVVDPLNVKETIEVFKAALAAEGVSVIIA 527 (595)
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 3567788888888999999999999999999844
No 237
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=49.14 E-value=51 Score=29.20 Aligned_cols=51 Identities=8% Similarity=0.170 Sum_probs=35.6
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEE
Q 017410 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLI 295 (372)
Q Consensus 237 ~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~viv 295 (372)
+|++++||+.|.++... +++.|.++|.++.+++-+ .+.+.+.++..+-||+
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~------~~~l~~~l~~aDiVIs 93 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSK------TKNLKEHTKQADIVIV 93 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECC------chhHHHHHhhCCEEEE
Confidence 46789999999886653 345677788888888843 2556677777765443
No 238
>PLN02790 transketolase
Probab=49.09 E-value=2e+02 Score=31.20 Aligned_cols=83 Identities=10% Similarity=0.006 Sum_probs=49.5
Q ss_pred cccc-H--HHHHHHHHHHHHhhhhhcCCCcccccEEE-EeCCCCCCCCCCCC--ChhHH-HHHcCCCCcEEEee----CC
Q 017410 118 FADY-I--FPAFDQIVNEAAKFRYRSGNQFNCGGLTV-RAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVIP----RS 186 (372)
Q Consensus 118 ~~~F-~--~ra~dqi~~~~a~~~~~~~~~~~~~pvvi-~~~~G~~g~~G~~H--s~~d~-a~l~~iP~l~V~~P----sd 186 (372)
.++- + ..++|-+. .++.++ +.++++ +..++..- ++.+. ..+++ ..+..+ ||.++.+ .|
T Consensus 144 ~GDG~l~eG~~~EAl~-~A~~~~--------L~nli~i~d~N~~~i-~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd 212 (654)
T PLN02790 144 LGDGCQMEGISNEAAS-LAGHWG--------LGKLIVLYDDNHISI-DGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTD 212 (654)
T ss_pred ECcCcccchHHHHHHH-HHHHhC--------CCCEEEEEecCCccc-cCCcccccchhHHHHHHHc-CCeEEEECCCCCC
Confidence 5555 2 46677654 344332 413554 45555431 12222 12344 467776 9999998 46
Q ss_pred HHHHHHHHHHhHh-CCCcEEEEeccc
Q 017410 187 PRQAKGLLLSCIR-DPNPVVFFEPKW 211 (372)
Q Consensus 187 ~~e~~~~l~~a~~-~~~Pv~ir~p~~ 211 (372)
..++..+++.+.+ .++|++|-..+.
T Consensus 213 ~~~l~~a~~~a~~~~~~P~lI~~~T~ 238 (654)
T PLN02790 213 YDEIRAAIKEAKAVTDKPTLIKVTTT 238 (654)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEEe
Confidence 7788888888876 588999965443
No 239
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=48.09 E-value=81 Score=30.58 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCeeEEEecccccH---HHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CC--CCCC--CC-CCCChhHH
Q 017410 100 GFAIGLAAMGNRAIAEIQFADYI---FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YG--AVGH--GG-HYHSQSPE 170 (372)
Q Consensus 100 g~A~GlA~~G~~pi~~i~~~~F~---~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G--~~g~--~G-~~Hs~~d~ 170 (372)
|.|.++-..|...++...|.+-. ...++-+ |-++.. ++ |+|++.- ++ .+.. .. ......+.
T Consensus 112 G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Eal-N~A~~~--------~l-PvifvveNN~~aist~~~~~~~~~~~~~~ 181 (300)
T PF00676_consen 112 GVALAIKYRGKDGVVVCFFGDGATSQGDFHEAL-NLAALW--------KL-PVIFVVENNQYAISTPTEEQTASPDIADR 181 (300)
T ss_dssp HHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHH-HHHHHT--------TT-SEEEEEEEESEETTEEHHHHCSSSTSGGG
T ss_pred chhHhhhhcCCceeEEEEecCcccccCccHHHH-HHHhhc--------cC-CeEEEEecCCcccccCccccccccchhhh
Confidence 33333333466565554678775 3344443 344443 36 8888743 22 2221 11 11112344
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC----CCcEEEEe
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVFFE 208 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~----~~Pv~ir~ 208 (372)
+-.-.||+++ +.=.|+.++...+++|+++ ++|++|-.
T Consensus 182 a~~~gip~~~-VDG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 182 AKGYGIPGIR-VDGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp GGGTTSEEEE-EETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred hhccCCcEEE-ECCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4444688774 5889999999999999873 79999943
No 240
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=48.08 E-value=94 Score=28.10 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=50.8
Q ss_pred eChhHHHHHHHHHHHHhcCCceeEEeeccc--CCC----------------C-HHHHHHHHhcCCeEEEEcCCCCCCcHH
Q 017410 246 WGAQLSIMEQACLDAEKEGISCELIDLKTL--IPW----------------D-KETVEASVRKTGRLLISHEAPVTGGFG 306 (372)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i--~P~----------------d-~~~l~~~~~~~~~vivvEe~~~~GGlg 306 (372)
.|++...+.++++.+++.|.++++++++-. +|- | .+.|.+.+..++.+|+---- ..|++.
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPv-y~g~vs 91 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPV-YFGNVS 91 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCe-ecCCch
Confidence 588888899999999999999999999854 221 2 35566667777766554444 479998
Q ss_pred HHHHHHHHH
Q 017410 307 AEISASILE 315 (372)
Q Consensus 307 ~~i~~~l~~ 315 (372)
+.+...+-.
T Consensus 92 a~~K~fiDR 100 (207)
T COG0655 92 AQMKAFIDR 100 (207)
T ss_pred HHHHHHHhh
Confidence 888877754
No 241
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=47.82 E-value=60 Score=27.77 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=35.9
Q ss_pred EEEEEeChhH----HHHHHHHHHHHhcCC--ceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 241 ITLVGWGAQL----SIMEQACLDAEKEGI--SCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 241 i~ii~~G~~~----~~a~~Aa~~L~~~Gi--~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
++|+++|+.. .....+++.|++... ++++++..+.- ..+...+.+++++|+||--
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~----~~l~~~l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAG----MEVMFRARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCH----HHHHHHhcCCCEEEEEEeC
Confidence 3577888766 245667777766543 47888887752 2333446677888888763
No 242
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=46.99 E-value=1e+02 Score=25.75 Aligned_cols=76 Identities=11% Similarity=0.093 Sum_probs=49.1
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhc---CCceeEEeeccc--------------CCCCHHHHHHHHh-cCCeEEEEcCCCC
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKE---GISCELIDLKTL--------------IPWDKETVEASVR-KTGRLLISHEAPV 301 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~---Gi~v~vi~~~~i--------------~P~d~~~l~~~~~-~~~~vivvEe~~~ 301 (372)
-+++++.||....+.+..+.+.++ ...-..+..-++ .|-..+.|.+... ++++|+|+=-+..
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~ 81 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHII 81 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeE
Confidence 378999999987776665554332 111112232222 5777788887655 4789999988887
Q ss_pred CCcHHHHHHHHHHH
Q 017410 302 TGGFGAEISASILE 315 (372)
Q Consensus 302 ~GGlg~~i~~~l~~ 315 (372)
.|.-...|.+.+.+
T Consensus 82 ~G~e~~di~~~v~~ 95 (127)
T cd03412 82 PGEEYEKLKREVDA 95 (127)
T ss_pred CcHHHHHHHHHHHH
Confidence 77666667666654
No 243
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=46.71 E-value=52 Score=26.21 Aligned_cols=43 Identities=30% Similarity=0.311 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
+....+.+|.+.|++.|++.+.+|+.. .|++.+.+.+.+.+..
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKLG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHhcC
Confidence 455778889999999999999999885 7888888887776543
No 244
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=46.64 E-value=2.2e+02 Score=30.12 Aligned_cols=109 Identities=13% Similarity=0.041 Sum_probs=61.2
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEeccccc--HHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F--~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~ 158 (372)
|.+|+..+- +=...+..|.|++++. -++++.+ .++. ++-..| |- .+... ++ |++++ .-.+..
T Consensus 411 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~~E-L~-Ta~r~--------~l-pv~~vV~NN~~y 478 (572)
T PRK08979 411 PRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCV-TGDGSIQMNIQE-LS-TALQY--------DI-PVKIINLNNRFL 478 (572)
T ss_pred CCeEEccCCcccccchhhHHHhhhhhCCCCeEEEE-EcchHhhccHHH-HH-HHHHc--------CC-CeEEEEEeCCcc
Confidence 778887542 2233566777777763 3555554 4554 333322 32 23322 35 65554 333322
Q ss_pred C---------CCCC-CCC----hhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q 017410 159 G---------HGGH-YHS----QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (372)
Q Consensus 159 g---------~~G~-~Hs----~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-~~Pv~i 206 (372)
+ .++. .+. .-|. .+.+++ |..-..-.+..|+..+++.+++. ++|++|
T Consensus 479 ~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lI 541 (572)
T PRK08979 479 GMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAY-GHVGIRISDPDELESGLEKALAMKDRLVFV 541 (572)
T ss_pred HHHHHHHHHHhCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 1 0111 110 1133 455555 56678889999999999999985 899988
No 245
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=46.55 E-value=86 Score=28.52 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=40.1
Q ss_pred CcEEEEEeChhH----HHHHHHHHHHHhc---CCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcC
Q 017410 239 SDITLVGWGAQL----SIMEQACLDAEKE---GISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (372)
Q Consensus 239 ~di~ii~~G~~~----~~a~~Aa~~L~~~---Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe 298 (372)
.+++|++.|+.. .....+++.|+++ .-++++++..+.- ..+...+.+++++|+||-
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g----~~ll~~i~~~d~vIiVDA 66 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQG----LNLLGYVESASHLLILDA 66 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCH----HHHHHHHcCCCEEEEEEC
Confidence 468899999987 3466788888654 2348899988853 234456678888888875
No 246
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=46.04 E-value=1.8e+02 Score=30.71 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=28.1
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHh---CCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIR---DPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~---~~~Pv~i 206 (372)
.+...+ |..-+.-.++.|+...++.+++ .++|++|
T Consensus 515 ~lA~a~-G~~g~~v~~~~el~~al~~a~~~~~~~~p~li 552 (579)
T TIGR03457 515 GIADAM-GAKGVVVDKPEDVGPALKKAIAAQAEGKTTVI 552 (579)
T ss_pred HHHHHC-CCeEEEECCHHHHHHHHHHHHhhCCCCCcEEE
Confidence 444554 6667788999999999999997 4789998
No 247
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=46.03 E-value=42 Score=24.95 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=39.4
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcCCCCCCcHHHHH
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe~~~~GGlg~~i 309 (372)
-+....+.+|.+.|++.|++...+++.. .|-..+.+.+... .+=++|+++... .||+.+..
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~~-~~~~~~~~~~~~g~~~vP~i~i~g~~-igg~~~~~ 67 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVDG-DPALRDEMMQRSGRRTVPQIFIGDVH-VGGCDDLY 67 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEecC-CHHHHHHHHHHhCCCCcCEEEECCEE-EcChHHHH
Confidence 3556788889999999999999999864 2211223332211 123667787764 79987754
No 248
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=45.90 E-value=1.8e+02 Score=30.92 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=30.3
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+++ |+.-+.-.+..|+...++++++.++|++|
T Consensus 507 ~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 541 (597)
T PRK08273 507 RFAELL-GLKGIRVDDPEQLGAAWDEALAADRPVVL 541 (597)
T ss_pred HHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 455555 77888899999999999999999999999
No 249
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=45.90 E-value=93 Score=32.63 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=83.5
Q ss_pred HHHHHHHHHhc-C-CCEEEEeCCCCCCCccccchhHHHHhCCCceEecch-hHHHHHHHHHHHHhc-CCeeEEEeccccc
Q 017410 46 INQALHIALET-D-PRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-CEQGIVGFAIGLAAM-GNRAIAEIQFADY 121 (372)
Q Consensus 46 ~~~~L~~l~~~-d-~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GI-aE~~~vg~A~GlA~~-G~~pi~~i~~~~F 121 (372)
+++.|-+.+.+ + ..++.+-.|-..+ .++ +-++. |+ +-.+|- +|-|+.=.|=|-|+. |.-.++. ||+..
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGDFNL~----LLD-~l~~~-~~-lrwvGn~NELNaAYAADGYAR~~Gi~a~Vt-TfgVG 77 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGDFNLS----LLD-KLYAV-PG-LRWVGNCNELNAAYAADGYARSKGIGACVT-TFGVG 77 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCcccHH----HHH-Hhhhc-CC-ceeecccchhhhhhhhcchhhhcCceEEEE-Eeccc
Confidence 45555443333 3 4466665664322 233 33444 44 333443 788988899999997 7777776 78888
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCcccccEEEEe--CCCC-CCCC-CCCCCh--hHHH----HHcCCCCcEEEeeCCHHHHH
Q 017410 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA--PYGA-VGHG-GHYHSQ--SPEA----FFCHVPGLKVVIPRSPRQAK 191 (372)
Q Consensus 122 ~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~--~~G~-~g~~-G~~Hs~--~d~a----~l~~iP~l~V~~Psd~~e~~ 191 (372)
-.-|++-|- -+ |.. ++ ||+.+. |+-- .+.+ =-||.. .|.. ++..+.- .+.+=.|.+++-
T Consensus 78 eLSAlNGIA--Gs---YAE----~v-pVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc-~~a~I~~~e~A~ 146 (561)
T KOG1184|consen 78 ELSALNGIA--GA---YAE----NV-PVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTC-YTAMINDIEDAP 146 (561)
T ss_pred hhhhhcccc--hh---hhh----cC-CEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhh-HHhhhcCHhhhH
Confidence 777777764 23 444 36 887752 2111 1112 235532 2543 3333322 233334555555
Q ss_pred HHHH----HhHhCCCcEEEEeccccccc
Q 017410 192 GLLL----SCIRDPNPVVFFEPKWLYRL 215 (372)
Q Consensus 192 ~~l~----~a~~~~~Pv~ir~p~~l~r~ 215 (372)
+.++ .++...+||||-.|..+...
T Consensus 147 ~~ID~aI~~~~~~~rPVYi~iP~n~~~~ 174 (561)
T KOG1184|consen 147 EQIDKAIRTALKESKPVYIGVPANLADL 174 (561)
T ss_pred HHHHHHHHHHHHhcCCeEEEeecccccC
Confidence 5555 45557999999888765433
No 250
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=45.28 E-value=55 Score=26.74 Aligned_cols=42 Identities=24% Similarity=0.130 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (372)
.....+.+|.+.|++.|++++.+|+.. .|++.+.|.+.++..
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~~ 49 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSLT 49 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHHh
Confidence 456788889999999999999999865 788888888777644
No 251
>PRK12559 transcriptional regulator Spx; Provisional
Probab=45.25 E-value=63 Score=27.32 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhc
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK 289 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~ 289 (372)
+....+.+|.+.|++.|++...+|+.. .|++.+.|.+.++.
T Consensus 8 ~~C~~crkA~~~L~~~gi~~~~~di~~-~~~s~~el~~~l~~ 48 (131)
T PRK12559 8 ASCASCRKAKAWLEENQIDYTEKNIVS-NSMTVDELKSILRL 48 (131)
T ss_pred CCChHHHHHHHHHHHcCCCeEEEEeeC-CcCCHHHHHHHHHH
Confidence 445678889899999999999999876 88899988887766
No 252
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=45.21 E-value=1.4e+02 Score=31.55 Aligned_cols=109 Identities=16% Similarity=0.059 Sum_probs=59.2
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEeccccc--HHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F--~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~ 158 (372)
|.+|+..+- +=...+..|.|++++. -++++.+ .++. ++...| +. .+... ++ |++++ .-.|..
T Consensus 412 p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i-~GDG~f~~~~~e-l~-Ta~~~--------~l-pi~~vV~NN~~~ 479 (570)
T PRK06725 412 PRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICI-AGDASFQMNIQE-LQ-TIAEN--------NI-PVKVFIINNKFL 479 (570)
T ss_pred CCeEEccCCcccccchhhHHHhhHhhcCCCeEEEE-EecchhhccHHH-HH-HHHHh--------CC-CeEEEEEECCcc
Confidence 778886531 2224556777777763 3555554 4554 333333 32 23322 35 66654 223322
Q ss_pred C---------CCC----CCCChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 159 G---------HGG----HYHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 159 g---------~~G----~~Hs~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
+ .++ .....-|. .+.+++ |..-..-.++.|+..+++.+++.++|++|
T Consensus 480 ~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~li 540 (570)
T PRK06725 480 GMVRQWQEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAHEGPVVV 540 (570)
T ss_pred HHHHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 011 01111133 344444 55555568999999999999999999998
No 253
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=44.94 E-value=64 Score=28.41 Aligned_cols=55 Identities=20% Similarity=0.148 Sum_probs=35.0
Q ss_pred cEEEEEeChhHH----HHHHHHHHHHhcCC---ceeEEeecccCCCCHHHHHHHHhcCCeEEEEcC
Q 017410 240 DITLVGWGAQLS----IMEQACLDAEKEGI---SCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (372)
Q Consensus 240 di~ii~~G~~~~----~a~~Aa~~L~~~Gi---~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe 298 (372)
.++|+++|+... .-...+++|++... ++.|++.-+.-|. +...+..++++|+||-
T Consensus 3 ~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~----l~~~l~~~d~vIIVDa 64 (160)
T COG0680 3 RILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPN----LLGLLAGYDPVIIVDA 64 (160)
T ss_pred eEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHH----HHHHhcCCCcEEEEEe
Confidence 577888887652 24456677766544 5778998885332 3344556666777664
No 254
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=44.39 E-value=69 Score=27.19 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=35.4
Q ss_pred EEEeChhH----HHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 243 LVGWGAQL----SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 243 ii~~G~~~----~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
|+++|+.. .....+++.|++. ++++++..+ ....+...+.+++++|+||--
T Consensus 2 VlGiGN~l~~DDg~G~~v~~~L~~~--~v~vi~~g~----~~~~ll~~i~~~d~viiVDA~ 56 (140)
T cd06070 2 IIGVGNRLYGDDGFGSCLAEALEQC--GAPVFDGGL----DGFGLLSHLENYDIVIFIDVA 56 (140)
T ss_pred EEEECchhcccCcHHHHHHHHHhhC--CCEEEECCC----cHHHHHHHHcCCCEEEEEEee
Confidence 67777766 3466777888763 578888877 223444556788899888874
No 255
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=44.17 E-value=51 Score=26.82 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (372)
+....+.+|.+.|+++|++.+.+|+.. .|+..+.|.+.+++.
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~~ 48 (111)
T cd03036 7 PKCSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEKS 48 (111)
T ss_pred CCCHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHHc
Confidence 445678889999999999999999886 688888887766543
No 256
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=43.96 E-value=97 Score=30.66 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=51.1
Q ss_pred eeCCcEEEEEeChh-HHHHHHHHHHHHhcCC-ceeEEeecccCCCCHHH-----HHHHHhcCCeEEEEcCCCCCCcHHHH
Q 017410 236 REGSDITLVGWGAQ-LSIMEQACLDAEKEGI-SCELIDLKTLIPWDKET-----VEASVRKTGRLLISHEAPVTGGFGAE 308 (372)
Q Consensus 236 ~~g~di~ii~~G~~-~~~a~~Aa~~L~~~Gi-~v~vi~~~~i~P~d~~~-----l~~~~~~~~~vivvEe~~~~GGlg~~ 308 (372)
+.++ =+|+++|.. ..+..+|++.++++|. ++.++++.+..|-|.+. +.+........|=+-+|. .|-+...
T Consensus 145 ~~~k-PiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT-~g~~a~l 222 (347)
T COG2089 145 KKGK-PIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHT-LGILAPL 222 (347)
T ss_pred hcCC-CEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCc-cchhHHH
Confidence 3455 457888864 6889999999999876 48999999999988875 334344455556678886 4544443
Q ss_pred HH
Q 017410 309 IS 310 (372)
Q Consensus 309 i~ 310 (372)
.+
T Consensus 223 ~A 224 (347)
T COG2089 223 AA 224 (347)
T ss_pred HH
Confidence 33
No 257
>PRK07586 hypothetical protein; Validated
Probab=43.08 E-value=3.4e+02 Score=28.06 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=28.1
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.+ |..-..-.++.|+..+++++++.++|++|
T Consensus 476 ~lA~a~-G~~~~~V~~~~el~~al~~a~~~~~p~li 510 (514)
T PRK07586 476 ALAEGM-GVPARRVTTAEEFADALAAALAEPGPHLI 510 (514)
T ss_pred HHHHHC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 344444 55666779999999999999999999998
No 258
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=42.41 E-value=1.1e+02 Score=26.71 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=38.7
Q ss_pred cEEEEEeChhH----HHHHHHHHHHHhc-C--CceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 240 DITLVGWGAQL----SIMEQACLDAEKE-G--ISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 240 di~ii~~G~~~----~~a~~Aa~~L~~~-G--i~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
+++|+++|+.. .....+++.|++. . -++++++..+.- ..+...+..++++|+||--
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~----~~ll~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG----MELLGDMANRDHLIIADAI 64 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH----HHHHHHHhCCCEEEEEEec
Confidence 47899999887 2466788888654 3 257888887742 3344556678888888764
No 259
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=42.38 E-value=2.3e+02 Score=30.24 Aligned_cols=112 Identities=17% Similarity=0.144 Sum_probs=62.1
Q ss_pred ceEecchhHHHHHHHHHHHHhc----C-CeeEEEecccccH---HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM----G-NRAIAEIQFADYI---FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA 157 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~----G-~~pi~~i~~~~F~---~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~ 157 (372)
.++.+|+.= +.+++|.|+|.+ | ...+++ .+++-. ..++|.+. .++.++ . |++++ ..++.
T Consensus 108 ~~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~-~iGDG~~~eG~~~EAln-~A~~~k--------~-~li~Ii~dN~~ 175 (581)
T PRK12315 108 DFFTVGHTS-TSIALATGLAKARDLKGEKGNIIA-VIGDGSLSGGLALEGLN-NAAELK--------S-NLIIIVNDNQM 175 (581)
T ss_pred CCcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEE-EECchhhhcchHHHHHH-HHHhhC--------C-CEEEEEECCCC
Confidence 345777644 467788888775 3 123333 256653 25677664 455432 4 77776 44443
Q ss_pred CCC---CCCCCChh--------H-HHHHcC--CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEecc
Q 017410 158 VGH---GGHYHSQS--------P-EAFFCH--VPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPK 210 (372)
Q Consensus 158 ~g~---~G~~Hs~~--------d-~a~l~~--iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~ir~p~ 210 (372)
+.. ++..+... + ...+.+ ++.+.|+..-|..++.++++.+-+.++|++|-..+
T Consensus 176 si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~T 242 (581)
T PRK12315 176 SIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHIHT 242 (581)
T ss_pred cCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 221 11111111 1 234554 44455556677778888888877778999996543
No 260
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=42.32 E-value=1.2e+02 Score=32.02 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=75.8
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecch--hHHHHHHHHHHHHhcC-CeeEEE
Q 017410 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAE 115 (372)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~ 115 (372)
.++.. .+.+.|.+.+..+ .+++ .|.+ +. ...+.-.- |.+|+..+- +=...++.|.|+++.. -++++.
T Consensus 384 ~i~~~-~~~~~l~~~l~~~-~~vv--~~~~----~~-~~~~~~~~-~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~ 453 (569)
T PRK08327 384 PITPA-YLSYCLGEVADEY-DAIV--TEYP----FV-PRQARLNK-PGSYFGDGSAGGLGWALGAALGAKLATPDRLVIA 453 (569)
T ss_pred CcCHH-HHHHHHHHhcCcc-ceEE--eccH----HH-HHhcCccC-CCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEE
Confidence 34443 3666677776654 4444 4432 11 22233333 677776542 3334556777777763 456666
Q ss_pred ecccccH--HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCC----------CC------CC-C----ChhHH-
Q 017410 116 IQFADYI--FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGH----------GG------HY-H----SQSPE- 170 (372)
Q Consensus 116 i~~~~F~--~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~----------~G------~~-H----s~~d~- 170 (372)
+ .++.. +-..++....+... ++ |++++ .-.+.++. .+ .. . ..-|.
T Consensus 454 i-~GDG~f~~~~~e~~l~ta~~~--------~l-~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 523 (569)
T PRK08327 454 T-VGDGSFIFGVPEAAHWVAERY--------GL-PVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFA 523 (569)
T ss_pred E-ecCcceeecCcHHHHHHHHHh--------CC-CEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHH
Confidence 4 55552 33334433334332 24 65554 33332110 11 01 0 11243
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC----CCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~----~~Pv~i 206 (372)
.+..++ |...+.-.++.|+...++++++. ++|++|
T Consensus 524 ~la~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~li 562 (569)
T PRK08327 524 KIAEAF-GGYGERVEDPEELKGALRRALAAVRKGRRSAVL 562 (569)
T ss_pred HHHHhC-CCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 344443 33455557999999999999876 789998
No 261
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=41.88 E-value=85 Score=26.47 Aligned_cols=53 Identities=21% Similarity=0.208 Sum_probs=35.4
Q ss_pred EEEeChhH----HHHHHHHHHHHhcC--CceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 243 LVGWGAQL----SIMEQACLDAEKEG--ISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 243 ii~~G~~~----~~a~~Aa~~L~~~G--i~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
|+++|+.. .....+++.|++.. -++++++..+. + ..+...++.++++|+||--
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~-~---~~l~~~l~~~d~viiVDA~ 60 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTL-G---LELLDLLEGADRVIIVDAV 60 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCC-H---HHHHHHHhcCCeEEEEECc
Confidence 66777765 24566777887663 36888888885 2 2344556678888888764
No 262
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=41.76 E-value=52 Score=27.45 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=31.2
Q ss_pred eChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEc
Q 017410 246 WGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISH 297 (372)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvE 297 (372)
+|++-..|.+.++.|++.|+++.++++... +.. .+.+...+.++++-
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~~~~~~~~---~~~--~~~~~~~~~~i~~~ 53 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVRVVDLDDF---DDS--PSDLSEYDLLIFGV 53 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEEEEEGGGS---CHH--HHHHCTTSEEEEEE
T ss_pred chhHHHHHHHHHHHHHHcCCceeeechhhh---hhh--hhhhhhhceeeEee
Confidence 455556677777778888999999997765 433 33455556665543
No 263
>PRK07524 hypothetical protein; Provisional
Probab=41.52 E-value=2.3e+02 Score=29.49 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+...+ |+....-.++.|+...++++++.++|++|
T Consensus 490 ~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 524 (535)
T PRK07524 490 ALARAF-GCAAERVADLEQLQAALRAAFARPGPTLI 524 (535)
T ss_pred HHHHHC-CCcEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 454544 55566668999999999999999999998
No 264
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=41.42 E-value=59 Score=32.89 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=57.2
Q ss_pred EEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEE-cCCCCCCcHH--HHHHHHHHHhc
Q 017410 243 LVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLIS-HEAPVTGGFG--AEISASILERC 317 (372)
Q Consensus 243 ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivv-Ee~~~~GGlg--~~i~~~l~~~~ 317 (372)
||++-..-..+++..+.|+.+|++|+.+.+..==-.|.+.|.+++++...+|.| --|+.+|-+- .+|++.+.+++
T Consensus 94 IIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~ 171 (386)
T COG1104 94 IITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERG 171 (386)
T ss_pred EEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcC
Confidence 566667788899999999888999999998875568899999999876555544 5555566652 46777777765
No 265
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=41.31 E-value=1.2e+02 Score=25.07 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=44.8
Q ss_pred EEEEeChhHH-----HHHHHHHHHHhcCCceeEEeec-ccCCCCHHHHHHHHhcCC-eEEEEcCCCCCCcHHHHH
Q 017410 242 TLVGWGAQLS-----IMEQACLDAEKEGISCELIDLK-TLIPWDKETVEASVRKTG-RLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 242 ~ii~~G~~~~-----~a~~Aa~~L~~~Gi~v~vi~~~-~i~P~d~~~l~~~~~~~~-~vivvEe~~~~GGlg~~i 309 (372)
.++++|.... ...+-.+.|.+.|...=+|... .+..+|.+.+. .+.+.+ .++.+..+....-+-+.|
T Consensus 45 lvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~-~A~~~~lPli~ip~~~~f~~I~~~v 118 (123)
T PF07905_consen 45 LVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIE-LADELGLPLIEIPWEVPFSDITREV 118 (123)
T ss_pred EEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHH-HHHHcCCCEEEeCCCCCHHHHHHHH
Confidence 4566666543 3567788898889888888775 88889977664 455544 788887776543333333
No 266
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=41.19 E-value=4.7e+02 Score=27.85 Aligned_cols=149 Identities=17% Similarity=0.115 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEec-ccccHHH
Q 017410 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ-FADYIFP 124 (372)
Q Consensus 46 ~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~-~~~F~~r 124 (372)
..-.+++|.+..-+=+|+++... |.- +.=...++ ++--.-+-|+|.++--+|.|+|..-.+|++.+. .++-...
T Consensus 11 a~v~~eeL~r~GV~~vvicPGSR---STP-Lala~~~~-~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~AN 85 (566)
T COG1165 11 ARVFLEELARLGVRDVVICPGSR---STP-LALAAAAH-DAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVAN 85 (566)
T ss_pred HHHHHHHHHHcCCcEEEECCCCC---CcH-HHHHHHhc-CCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhh
Confidence 33445556666677788888755 222 22233555 665677889999999999999999999977643 3333456
Q ss_pred HHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC--CCCCCCCChhHHHHHcCCCCcEEE--eeCCHHHHHHHHHHhHh-
Q 017410 125 AFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGGHYHSQSPEAFFCHVPGLKVV--IPRSPRQAKGLLLSCIR- 199 (372)
Q Consensus 125 a~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~--g~~G~~Hs~~d~a~l~~iP~l~V~--~Psd~~e~~~~l~~a~~- 199 (372)
-|..|. ++.+.+ + |+++.+..-+- -+-|.....+...+|.+-|+..+= .|.+..++...+++...
T Consensus 86 l~PAVi-EA~~sr--------v-pLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~ 155 (566)
T COG1165 86 LYPAVI-EANLSR--------V-PLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASA 155 (566)
T ss_pred ccHHHH-hhhhcC--------C-ceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHH
Confidence 666665 454433 6 88887543321 123444445677888887776443 56777776666664332
Q ss_pred --------CCCcEEEEec
Q 017410 200 --------DPNPVVFFEP 209 (372)
Q Consensus 200 --------~~~Pv~ir~p 209 (372)
..|||=|=.|
T Consensus 156 ~~~~a~~~~~GpVHiN~P 173 (566)
T COG1165 156 AAQQARTPHAGPVHINVP 173 (566)
T ss_pred HHHhccCCCCCceEecCC
Confidence 3688888443
No 267
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=40.99 E-value=52 Score=26.93 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=35.6
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
-+....+.+|.+.|++.|++.+.+|+.. .|...+.+.+.++..+
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 6 SPNCTTCKKARRWLEANGIEYQFIDIGE-DGPTREELLDILSLLE 49 (117)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCC-ChhhHHHHHHHHHHcC
Confidence 3556778889999999999999999865 7888888887776554
No 268
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=40.64 E-value=1.2e+02 Score=32.57 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=85.9
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeEEE
Q 017410 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAE 115 (372)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~ 115 (372)
...+.-.++.....++.... ..|+| +. ++.+. |-+-.|+-+.=...+++|.|++.. ..+++..
T Consensus 387 PHr~sf~~~k~~~~~~~~~~------~~DIGCyt--lg~~~-------P~~~~d~t~~mGssig~a~g~~~~~~k~~va~ 451 (640)
T COG4231 387 PHRPSFYALKKAAAELGGHP------SGDIGCYT--LGILP-------PLNTVDTTTMMGSSIGIAGGLSFASTKKIVAV 451 (640)
T ss_pred CCchhhHHHHHHHHhhCCCC------CCCcceee--cccCC-------CcchhhhhhhccchhhhccccccccCCceEEE
Confidence 34445556666665554433 77877 11 11121 334445544445667899999955 5666666
Q ss_pred ecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEe-C-CCCCCC---C----------CCCCChhHHHHHcCCCCcE
Q 017410 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-P-YGAVGH---G----------GHYHSQSPEAFFCHVPGLK 180 (372)
Q Consensus 116 i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~-~-~G~~g~---~----------G~~Hs~~d~a~l~~iP~l~ 180 (372)
|-=++|..-....|+|.+. ++ .+. -+++++ + ..-+|+ . ...|..+.+-=...+--+.
T Consensus 452 iGDsTF~HsGi~~l~nAV~-n~------~~~-~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~ 523 (640)
T COG4231 452 IGDSTFFHSGILALINAVY-NK------ANI-LVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVE 523 (640)
T ss_pred eccccccccCcHHHHHHHh-cC------CCe-EEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCceeee
Confidence 5556677777778887553 32 122 233332 1 111111 1 1112222221122345577
Q ss_pred EEeeCCHHHHHHHHHHhHhCCCcEEEEecc
Q 017410 181 VVIPRSPRQAKGLLLSCIRDPNPVVFFEPK 210 (372)
Q Consensus 181 V~~Psd~~e~~~~l~~a~~~~~Pv~ir~p~ 210 (372)
++.|-|-.++.+.++.+++.++|.+|...+
T Consensus 524 ~vdp~~~~~~~~~~keale~~gpsViiak~ 553 (640)
T COG4231 524 TVDPYDVKELSEAIKEALEVPGPSVIIAKR 553 (640)
T ss_pred ccCCcchHHHHHHHHHHhcCCCceEEEEcC
Confidence 888999999999999999999999996654
No 269
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=40.08 E-value=2.9e+02 Score=29.18 Aligned_cols=109 Identities=13% Similarity=0.055 Sum_probs=60.0
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEeccccc--HHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F--~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~ 158 (372)
|.+|+..|- +=...+..|.|++++. -++++.+ -++. .+-. ..|- .+... ++ |++++ .-.+..
T Consensus 411 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~-~eL~-Ta~r~--------~l-~v~ivV~NN~~y 478 (574)
T PRK07979 411 PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCV-TGDGSIQMNI-QELS-TALQY--------EL-PVLVLNLNNRYL 478 (574)
T ss_pred CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEE-EcchhhhccH-HHHH-HHHHh--------CC-CeEEEEEeCchh
Confidence 788887641 1123556777777763 3455553 4444 3333 2222 23322 35 65554 333322
Q ss_pred C---------CCCCCC-C---h-hHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC---CCcEEE
Q 017410 159 G---------HGGHYH-S---Q-SPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD---PNPVVF 206 (372)
Q Consensus 159 g---------~~G~~H-s---~-~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~---~~Pv~i 206 (372)
+ .++... . . -|. .+.+++ |..-+.-.++.|+..+++.+++. ++|.+|
T Consensus 479 g~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lI 543 (574)
T PRK07979 479 GMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAY-GHVGIQISHPDELESKLSEALEQVRNNRLVFV 543 (574)
T ss_pred hHHHHHHHHhcCCccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhccCCCCcEEE
Confidence 1 111111 1 1 133 455555 56667779999999999999985 899998
No 270
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=39.73 E-value=1.6e+02 Score=27.68 Aligned_cols=119 Identities=11% Similarity=0.069 Sum_probs=64.1
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeec--ccCC--CC---------HHHHHHHHhcCCeEEEEcCCCCCCcH
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK--TLIP--WD---------KETVEASVRKTGRLLISHEAPVTGGF 305 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~--~i~P--~d---------~~~l~~~~~~~~~vivvEe~~~~GGl 305 (372)
.++.|++-|.......+.+..| |++|.|+|.| +..+ |+ .+...+.+.....++++-.+.. +
T Consensus 101 ~~L~IfGaG~va~~la~la~~l---Gf~V~v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~th~h~---~ 174 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPL---PCRVTWVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLTHDHA---L 174 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcC---CCEEEEEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEeCChH---H
Confidence 4688999888777665555444 9999999988 3322 11 1222222334455665543321 3
Q ss_pred HHHHHHHHHHhccccCCC-cEEEEeccCCCcc---cccccCCCCcHHHHHHHHh-CCC------ChHHHHHhhhh
Q 017410 306 GAEISASILERCFLRLEA-PVARVCGLDTPFP---LVFEPFYMPTKNKASCLES-FKV------PAQHCCMNLTA 369 (372)
Q Consensus 306 g~~i~~~l~~~~~~~l~~-~v~~ig~~~~~~~---~lle~~~l~~~~~~~~i~~-~~~------~~~~~~~~~~~ 369 (372)
-..+...+.+.. +. -|--+|.+. ... ..|++.|++.++ +++++. .|| +|+.||-+++|
T Consensus 175 D~~~L~~aL~~~----~~~YIG~lGSr~-k~~~~~~~L~~~G~~~~~-l~ri~~PiGL~~iGa~tP~EIAlSIlA 243 (246)
T TIGR02964 175 DLELCHAALRRG----DFAYFGLIGSKT-KRARFEHRLRARGVDPAQ-IARMTCPIGLPGVKGKAPAVIAVSVAA 243 (246)
T ss_pred HHHHHHHHHhCC----CCcEEEEeCCHH-HHHHHHHHHHhcCCCHHH-HhhEeCCCCCCccCCCCHHHHHHHHHH
Confidence 344444443211 22 233343222 222 236677887654 566665 555 47778887766
No 271
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=39.61 E-value=1.5e+02 Score=21.55 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=42.3
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcCCCCCCcHHHHHHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGAEISAS 312 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe~~~~GGlg~~i~~~ 312 (372)
+++|.+. +.-..+.+|.+.|++.|++...+++.. .+ +.+.+.+... .+=++|+++... .||..+ |.++
T Consensus 2 ~v~lys~-~~Cp~C~~ak~~L~~~~i~~~~~~v~~-~~-~~~~~~~~~g~~~vP~ifi~g~~-igg~~~-l~~~ 70 (72)
T cd03029 2 SVSLFTK-PGCPFCARAKAALQENGISYEEIPLGK-DI-TGRSLRAVTGAMTVPQVFIDGEL-IGGSDD-LEKY 70 (72)
T ss_pred eEEEEEC-CCCHHHHHHHHHHHHcCCCcEEEECCC-Ch-hHHHHHHHhCCCCcCeEEECCEE-EeCHHH-HHHH
Confidence 3555554 667788899999999999999998764 22 3334433211 123557777664 688644 4433
No 272
>PRK06756 flavodoxin; Provisional
Probab=39.59 E-value=1.9e+02 Score=24.40 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=19.9
Q ss_pred eChhHHHHHHHHHHHHhcCCceeEEeecc
Q 017410 246 WGAQLSIMEQACLDAEKEGISCELIDLKT 274 (372)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 274 (372)
+|++-..|...++.|++.|.++.++++..
T Consensus 12 tGnTe~vA~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T PRK06756 12 SGNTEEMADHIAGVIRETENEIEVIDIMD 40 (148)
T ss_pred CchHHHHHHHHHHHHhhcCCeEEEeehhc
Confidence 34555556666667777788888888754
No 273
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=39.52 E-value=2e+02 Score=23.20 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=57.3
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhc-CCceeEEeecccCCCCH--HHHHHHH---hcCCeEEEEcCCCCCCcHHHHHHHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDK--ETVEASV---RKTGRLLISHEAPVTGGFGAEISASI 313 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~i~P~d~--~~l~~~~---~~~~~vivvEe~~~~GGlg~~i~~~l 313 (372)
.++|++.|....-.+++++.+-.+ --.+..+++..=..++. +.+.+.+ .+.+.++++-|=. ||-....+...
T Consensus 1 giii~sHG~~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~--ggsp~n~a~~~ 78 (116)
T PF03610_consen 1 GIIIASHGSLAEGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLILTDLG--GGSPFNEAARL 78 (116)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEEESST--TSHHHHHHHHH
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEEeeCC--CCccchHHHHH
Confidence 378999999999999999987644 23566666543332221 3455555 3356788776652 55433333333
Q ss_pred HHhccccCCCcEEEEeccCCCc--ccccccCCCCcHHHHHH
Q 017410 314 LERCFLRLEAPVARVCGLDTPF--PLVFEPFYMPTKNKASC 352 (372)
Q Consensus 314 ~~~~~~~l~~~v~~ig~~~~~~--~~lle~~~l~~~~~~~~ 352 (372)
... ...+..+.+-+.|. +.+......+.+++++.
T Consensus 79 ~~~-----~~~~~vi~G~Nlpmlle~~~~~~~~~~~el~~~ 114 (116)
T PF03610_consen 79 LLD-----KPNIRVISGVNLPMLLEALMARESMSLEELIEE 114 (116)
T ss_dssp HCT-----STTEEEEES--HHHHHHHHHHHTCHCHHHHHHH
T ss_pred hcc-----CCCEEEEecccHHHHHHHHHHHHhcCHHHHHHh
Confidence 222 22366777766542 12233334444444443
No 274
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=39.32 E-value=1.6e+02 Score=27.39 Aligned_cols=63 Identities=14% Similarity=0.039 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCceeEEeecccCCCCH--------HHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHH
Q 017410 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDK--------ETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (372)
Q Consensus 250 ~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~--------~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l 313 (372)
...+..+++.+.++|.++++++++-+-.++. ..+.+.++..+.+|++--- ..+++...+.+.|
T Consensus 43 ~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPE-Yn~sipg~LKNai 113 (219)
T TIGR02690 43 RLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPE-RHGAITGSQKDQI 113 (219)
T ss_pred HHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCc-cccCcCHHHHHHH
Confidence 3455556666776799999999875422221 3366777778777665322 3566666665544
No 275
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=39.23 E-value=1.1e+02 Score=26.02 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=35.0
Q ss_pred EEEeChhH----HHHHHHHHHHHhcC---CceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 243 LVGWGAQL----SIMEQACLDAEKEG---ISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 243 ii~~G~~~----~~a~~Aa~~L~~~G---i~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
|+++|+.. .....+++.|++.. -.+++++..+.- ..+...+++++++|+||--
T Consensus 2 ViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~~----~~l~~~l~~~d~viiVDA~ 61 (145)
T TIGR00072 2 VLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTLG----LELLDAIEGADRVIVVDAV 61 (145)
T ss_pred EEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH----HHHHHHHhCCCEEEEEEcc
Confidence 67777765 23556777777653 358888888752 3344556678888888764
No 276
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=39.05 E-value=91 Score=26.53 Aligned_cols=54 Identities=7% Similarity=0.085 Sum_probs=33.6
Q ss_pred EEEeChhH----HHHHHHHHHHHhcCC--ceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 243 LVGWGAQL----SIMEQACLDAEKEGI--SCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 243 ii~~G~~~----~~a~~Aa~~L~~~Gi--~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
|+++|+.. .....+++.|+++.. .+.+++..+. ..+.+.+.++.++++|+||--
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~---~~~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR---GIHLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC---HHHHHHHHHhcCCEEEEEEec
Confidence 56667665 345667777876543 3778887664 233333445567888888764
No 277
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=38.74 E-value=77 Score=27.54 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=36.1
Q ss_pred cEEEEEeChhH----HHHHHHHHHHHhcCC-ceeEEeecccCCCCHHHHHHHHhcCCeEEEEcC
Q 017410 240 DITLVGWGAQL----SIMEQACLDAEKEGI-SCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (372)
Q Consensus 240 di~ii~~G~~~----~~a~~Aa~~L~~~Gi-~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe 298 (372)
+++|+++|+.. .....+++.|++... ++++++..+ -|++...+.+. .+.+++|+||-
T Consensus 2 ~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~~~~i~~-~~~d~vIiVDA 63 (156)
T PRK11544 2 TDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APENDIVAIRE-LRPERLLIVDA 63 (156)
T ss_pred cEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHHHHHHHh-cCCCEEEEEEC
Confidence 36788888876 346677778866532 578888888 45443322221 14578888875
No 278
>PLN02409 serine--glyoxylate aminotransaminase
Probab=37.83 E-value=1.1e+02 Score=30.69 Aligned_cols=51 Identities=8% Similarity=0.096 Sum_probs=28.7
Q ss_pred eeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh
Q 017410 235 IREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR 288 (372)
Q Consensus 235 ~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~ 288 (372)
+++|.++++...|.....-. +.++..|.++..+....=..+|.+.|.+.++
T Consensus 81 ~~~Gd~Vlv~~~~~~~~~~~---~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~ 131 (401)
T PLN02409 81 LSPGDKVVSFRIGQFSLLWI---DQMQRLNFDVDVVESPWGQGADLDILKSKLR 131 (401)
T ss_pred CCCCCEEEEeCCCchhHHHH---HHHHHcCCceEEEECCCCCCCCHHHHHHHHh
Confidence 34556666666666543322 2333447777777655333466777777665
No 279
>PRK10824 glutaredoxin-4; Provisional
Probab=37.62 E-value=76 Score=26.35 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=45.6
Q ss_pred CCcEEEEEeC----hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhc-----CCeEEEEcCCCCCCcHHHH
Q 017410 238 GSDITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-----TGRLLISHEAPVTGGFGAE 308 (372)
Q Consensus 238 g~di~ii~~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~-----~~~vivvEe~~~~GGlg~~ 308 (372)
.++++|++-| +....+.+|.+.|.+.|++..++++.. |.+ +.+.++. +=.-|+|.... .||....
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~----d~~-~~~~l~~~sg~~TVPQIFI~G~~-IGG~ddl 87 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ----NPD-IRAELPKYANWPTFPQLWVDGEL-VGGCDIV 87 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC----CHH-HHHHHHHHhCCCCCCeEEECCEE-EcChHHH
Confidence 4678999988 467888889999999999999998754 222 3333322 22446676654 6988665
Q ss_pred HH
Q 017410 309 IS 310 (372)
Q Consensus 309 i~ 310 (372)
.+
T Consensus 88 ~~ 89 (115)
T PRK10824 88 IE 89 (115)
T ss_pred HH
Confidence 43
No 280
>PRK07064 hypothetical protein; Provisional
Probab=37.31 E-value=1.5e+02 Score=31.01 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.. |..-....+++|+...++.+++.++|++|
T Consensus 489 ~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 523 (544)
T PRK07064 489 LLAASL-GLPHWRVTSADDFEAVLREALAKEGPVLV 523 (544)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 344444 66777889999999999999999999999
No 281
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=37.08 E-value=2.3e+02 Score=23.15 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=57.9
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCC--HHHHHHHHhc---CCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWD--KETVEASVRK---TGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d--~~~l~~~~~~---~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
+++|++.|.......++++.+-.+.-++..+++..=..++ .+.+.+.+++ .+.++++=|= .||--..++..+.
T Consensus 2 ~ili~sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl--~GGSp~n~~~~~~ 79 (122)
T cd00006 2 GIIIATHGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDL--FGGSPNNAAARLS 79 (122)
T ss_pred eEEEEcCHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCcEEEEEeC--CCCCHHHHHHHHH
Confidence 4789999988888999998885333355666644321111 1234444443 3567766553 3554444444443
Q ss_pred HhccccCCCcEEEEeccCCCc--ccccc-cCCCCcHHHHHHHHh
Q 017410 315 ERCFLRLEAPVARVCGLDTPF--PLVFE-PFYMPTKNKASCLES 355 (372)
Q Consensus 315 ~~~~~~l~~~v~~ig~~~~~~--~~lle-~~~l~~~~~~~~i~~ 355 (372)
.. ..++..+.+-+.|. +.+.. ..+.+-+++++.+.+
T Consensus 80 ~~-----~~~~~visG~nlpmlle~~~~~~~~~~~~e~~~~~~~ 118 (122)
T cd00006 80 ME-----HPPVEVIAGVNLPMLLEAARARELGLSLDELVENALE 118 (122)
T ss_pred hc-----CCCEEEEEccCHHHHHHHHHccccCCCHHHHHHHHHH
Confidence 32 13466677766553 11111 223455555555443
No 282
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=36.74 E-value=35 Score=21.99 Aligned_cols=25 Identities=16% Similarity=0.136 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCChHHHHHhhhhcC
Q 017410 347 KNKASCLESFKVPAQHCCMNLTAHG 371 (372)
Q Consensus 347 ~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (372)
++.++.+.+.||+...|-.+|.+.+
T Consensus 3 ~~~v~~L~~mGf~~~~~~~AL~~~~ 27 (37)
T PF00627_consen 3 EEKVQQLMEMGFSREQAREALRACN 27 (37)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 6778899999999999999987654
No 283
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=36.48 E-value=3e+02 Score=29.19 Aligned_cols=110 Identities=13% Similarity=0.056 Sum_probs=59.5
Q ss_pred CCceEecch-hHH-HHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC
Q 017410 85 KSRVFNTPL-CEQ-GIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG 159 (372)
Q Consensus 85 p~r~i~~GI-aE~-~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g 159 (372)
|.+|+..+- .=. ..+..|.|++++. -+|++.+ .++.. +-....+.. +... ++ |++++ .-.+..+
T Consensus 425 p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i-~GDG~f~~~~~el~T-a~~~--------~l-pv~ivV~NN~~y~ 493 (588)
T PRK07525 425 GRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGF-AGDGAWGISMNEVMT-AVRH--------NW-PVTAVVFRNYQWG 493 (588)
T ss_pred CCeEEccccccccccHHHHHHHHHHhCCCCcEEEE-EcCchHhccHHHHHH-HHHh--------CC-CeEEEEEeCchhH
Confidence 788886532 222 2556777777764 4666664 55542 222233332 3322 35 66554 2332221
Q ss_pred ---------CC----CCCCCh-hHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC---CCcEEE
Q 017410 160 ---------HG----GHYHSQ-SPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD---PNPVVF 206 (372)
Q Consensus 160 ---------~~----G~~Hs~-~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~---~~Pv~i 206 (372)
.+ +..... -|. .+.+.+ |..-+.-.++.|++..++.+++. ++|++|
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lI 557 (588)
T PRK07525 494 AEKKNQVDFYNNRFVGTELDNNVSYAGIAEAM-GAEGVVVDTQEELGPALKRAIDAQNEGKTTVI 557 (588)
T ss_pred HHHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCCCcEEE
Confidence 11 111111 133 344443 55556668999999999999975 489998
No 284
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=35.94 E-value=3.2e+02 Score=24.47 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=46.6
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCC--CCHHHHHHHHhc--CCeEEEE-cC-CCCCCcHHHHHHHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP--WDKETVEASVRK--TGRLLIS-HE-APVTGGFGAEISASI 313 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P--~d~~~l~~~~~~--~~~vivv-Ee-~~~~GGlg~~i~~~l 313 (372)
++.||+=|-.+ |.+|++...+ .+-.+-|+.+.=.| +.-+.|.+.+++ +..|+|+ |+ +..--|.|+....++
T Consensus 1 kVIlvTDGD~~--A~ravE~aa~-~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 1 KVILVTDGDEY--AKRAVEIAAK-NIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYV 77 (180)
T ss_pred CEEEEECChHH--HHHHHHHHHH-HhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHH
Confidence 36788888753 4445544433 34466666665555 666788887775 4577764 55 444457888887777
Q ss_pred HHh
Q 017410 314 LER 316 (372)
Q Consensus 314 ~~~ 316 (372)
..+
T Consensus 78 ~~h 80 (180)
T PF14097_consen 78 ANH 80 (180)
T ss_pred HcC
Confidence 654
No 285
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=35.76 E-value=86 Score=26.79 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=32.0
Q ss_pred EEEEeChhH----HHHHHHHHHHHhcCC--ceeEEeecccCCCCHHHHHHHHhcCCeEEEEcC
Q 017410 242 TLVGWGAQL----SIMEQACLDAEKEGI--SCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (372)
Q Consensus 242 ~ii~~G~~~----~~a~~Aa~~L~~~Gi--~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe 298 (372)
+|+++|+.. .....+++.|++... .+.+++..+. |++...+.+. .+++++|+||-
T Consensus 2 lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~~~~~~~-~~~d~viivDA 62 (146)
T TIGR00142 2 VLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENFTVAIRE-LRPTHILIVDA 62 (146)
T ss_pred EEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHHHHHHHh-cCCCEEEEEEC
Confidence 577777766 235566777765432 4777887775 4443222221 14577777775
No 286
>PHA03050 glutaredoxin; Provisional
Probab=35.11 E-value=1.6e+02 Score=23.99 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=44.3
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCC---ceeEEeecccCCCCH---HHHHHHHhc-CCeEEEEcCCCCCCcHHHHHH
Q 017410 238 GSDITLVGWGAQLSIMEQACLDAEKEGI---SCELIDLKTLIPWDK---ETVEASVRK-TGRLLISHEAPVTGGFGAEIS 310 (372)
Q Consensus 238 g~di~ii~~G~~~~~a~~Aa~~L~~~Gi---~v~vi~~~~i~P~d~---~~l~~~~~~-~~~vivvEe~~~~GGlg~~i~ 310 (372)
.++++|++. +....+.+|.+.|++.|+ +.+++++.-..+ +. +.+.+.-.. +=+.|++... ..||+....+
T Consensus 12 ~~~V~vys~-~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~-~~~~~~~l~~~tG~~tVP~IfI~g~-~iGG~ddl~~ 88 (108)
T PHA03050 12 NNKVTIFVK-FTCPFCRNALDILNKFSFKRGAYEIVDIKEFKP-ENELRDYFEQITGGRTVPRIFFGKT-SIGGYSDLLE 88 (108)
T ss_pred cCCEEEEEC-CCChHHHHHHHHHHHcCCCcCCcEEEECCCCCC-CHHHHHHHHHHcCCCCcCEEEECCE-EEeChHHHHH
Confidence 456777776 456778889999999898 788999875322 22 233332222 2255667655 4799866554
No 287
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=35.09 E-value=2e+02 Score=26.92 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=45.7
Q ss_pred cCCceEEee-eCCcEEEEEeChhHHHHHHHHHHHHhcC--CceeEEe-ecccCC-CCHHHHHHHHhcCCeEEEEcCCC
Q 017410 228 PLSEAEVIR-EGSDITLVGWGAQLSIMEQACLDAEKEG--ISCELID-LKTLIP-WDKETVEASVRKTGRLLISHEAP 300 (372)
Q Consensus 228 ~~Gk~~v~~-~g~di~ii~~G~~~~~a~~Aa~~L~~~G--i~v~vi~-~~~i~P-~d~~~l~~~~~~~~~vivvEe~~ 300 (372)
|+|++.... .+..+++|+-|......+..++++.++| -++.++- .++-.. +..+.+.+...+ .-+.++++++
T Consensus 96 P~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~ 172 (252)
T COG0543 96 PLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGW 172 (252)
T ss_pred CCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCC
Confidence 345444333 2445999999999999999999998888 5666555 333222 334556554443 4556777665
No 288
>PTZ00089 transketolase; Provisional
Probab=34.83 E-value=5.1e+02 Score=28.12 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhhhhcCCCcccccEEE-EeCCCCCCCCCCCCC--hhHH-HHHcCCCCcEEEeeC----CHHHHHHHH
Q 017410 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTV-RAPYGAVGHGGHYHS--QSPE-AFFCHVPGLKVVIPR----SPRQAKGLL 194 (372)
Q Consensus 123 ~ra~dqi~~~~a~~~~~~~~~~~~~pvvi-~~~~G~~g~~G~~Hs--~~d~-a~l~~iP~l~V~~Ps----d~~e~~~~l 194 (372)
..+||.+. .++.++ +.++++ +..++..- ++.++. .+++ ..++++ ||.++.+. |..++..++
T Consensus 163 G~~~EAl~-~A~~~~--------L~nLi~i~d~N~~~i-~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~ 231 (661)
T PTZ00089 163 GVSQEALS-LAGHLG--------LEKLIVLYDDNKITI-DGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAI 231 (661)
T ss_pred HHHHHHHH-HHHHhC--------CCCEEEEEECCCccc-ccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHH
Confidence 46777654 355432 313544 45555432 233331 2333 577777 99999984 566777777
Q ss_pred HHhHhC-CCcEEEEeccc
Q 017410 195 LSCIRD-PNPVVFFEPKW 211 (372)
Q Consensus 195 ~~a~~~-~~Pv~ir~p~~ 211 (372)
+.+.+. ++|++|...+.
T Consensus 232 ~~a~~~~~~P~~I~~~T~ 249 (661)
T PTZ00089 232 EEAKKSKGKPKLIIVKTT 249 (661)
T ss_pred HHHHhcCCCcEEEEEEee
Confidence 777765 68999966543
No 289
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=34.81 E-value=85 Score=26.43 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (372)
-.....+.+|.+.|++.|++...+|+.. .|.+.+.+.+.++..
T Consensus 7 ~~~C~~C~ka~~~L~~~gi~~~~idi~~-~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 7 SPSCTSCRKAKAWLEEHDIPFTERNIFS-SPLTIDEIKQILRMT 49 (131)
T ss_pred CCCChHHHHHHHHHHHcCCCcEEeeccC-ChhhHHHHHHHHHHh
Confidence 4556788899999999999999999865 788888887777654
No 290
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=34.67 E-value=2.6e+02 Score=25.11 Aligned_cols=105 Identities=22% Similarity=0.241 Sum_probs=50.8
Q ss_pred HHHHHHhHhCCCcEEEE--ecccccccccccCCCCCccccCCceE---E----------eeeCCcEEEEEeChhHHHHH-
Q 017410 191 KGLLLSCIRDPNPVVFF--EPKWLYRLSVEEVPEDDYMLPLSEAE---V----------IREGSDITLVGWGAQLSIME- 254 (372)
Q Consensus 191 ~~~l~~a~~~~~Pv~ir--~p~~l~r~~~~~v~~~~~~~~~Gk~~---v----------~~~g~di~ii~~G~~~~~a~- 254 (372)
.++++.+--.+-|+++. ||++++.. ++++..+.....++|.. + +..++++ |-+|-.++.|.
T Consensus 42 ~rLl~aaril~vP~ivTEqYP~gLG~T-V~eLd~~g~~~~~~KT~FSM~~p~v~~s~~~i~~~k~V--vL~GiEthvCv~ 118 (201)
T KOG4044|consen 42 TRLLAAARILQVPVIVTEQYPEGLGKT-VPELDIEGLKLNLSKTKFSMVLPPVEDSLKDIFGGKTV--VLFGIETHVCVL 118 (201)
T ss_pred HHHHHhhhhhCCcEEeecccccccccc-chhhchhhhcccccccceeeeCchHHHHHHhccCCCeE--EEEecchheehH
Confidence 33444433357899986 47777654 33332222222222211 1 1224444 44566665543
Q ss_pred -HHHHHHHhcCCceeEEeecccCC--CCHHHHHHHHhcCCeEEEEcCC
Q 017410 255 -QACLDAEKEGISCELIDLKTLIP--WDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 255 -~Aa~~L~~~Gi~v~vi~~~~i~P--~d~~~l~~~~~~~~~vivvEe~ 299 (372)
.|.+ |-++|++|-|+-=-|=.. .|...-.+-.+..+.+++-.|+
T Consensus 119 qTa~d-Ll~rgl~VhvVaDacSSRs~~DR~~Al~r~rq~G~~lstsEs 165 (201)
T KOG4044|consen 119 QTALD-LLERGLNVHVVADACSSRSNQDRDLALERMRQAGANLSTSES 165 (201)
T ss_pred HHHHH-HHhCCceEEEEeehhccccchhHHHHHHHHHhcCCcccchHH
Confidence 3444 446799987764333222 3444333445555665544443
No 291
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=34.67 E-value=1e+02 Score=23.51 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=40.3
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh--cCCeEEEEcCCCCCCc
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR--KTGRLLISHEAPVTGG 304 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~--~~~~vivvEe~~~~GG 304 (372)
++|.+. +.-..+..|.+.|.+.|++...+++..-.+-..+...+... .+=.+|++++.. .||
T Consensus 3 v~iyt~-~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~-igg 66 (80)
T COG0695 3 VTIYTK-PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKH-VGG 66 (80)
T ss_pred EEEEEC-CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEE-EeC
Confidence 444444 44678888999999999999999988765522222233332 334678888854 354
No 292
>PRK12753 transketolase; Reviewed
Probab=34.53 E-value=4.2e+02 Score=28.81 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhhhhcCCCcccccEEE-EeCCCCCCCCCCCCC--hhHH-HHHcCCCCcEEEeeCC---HHHHHHHHH
Q 017410 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTV-RAPYGAVGHGGHYHS--QSPE-AFFCHVPGLKVVIPRS---PRQAKGLLL 195 (372)
Q Consensus 123 ~ra~dqi~~~~a~~~~~~~~~~~~~pvvi-~~~~G~~g~~G~~Hs--~~d~-a~l~~iP~l~V~~Psd---~~e~~~~l~ 195 (372)
..++|.+. .++.++ +..+++ +..++..- +|.++. .+++ ..++.. ||.++.+-| ..++.++++
T Consensus 161 G~~~EA~~-~A~~~k--------L~nLi~ivd~N~~~i-~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~ 229 (663)
T PRK12753 161 GISHEVCS-LAGTLG--------LGKLIGFYDHNGISI-DGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAIL 229 (663)
T ss_pred HHHHHHHH-HHHHHC--------CCCEEEEEECCCCcC-CCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHH
Confidence 45666653 355433 413554 45555432 222221 2344 566776 888875444 455666666
Q ss_pred HhHhC-CCcEEEEeccc
Q 017410 196 SCIRD-PNPVVFFEPKW 211 (372)
Q Consensus 196 ~a~~~-~~Pv~ir~p~~ 211 (372)
.|.+. ++|++|...+.
T Consensus 230 ~a~~~~~~P~~I~~~T~ 246 (663)
T PRK12753 230 EAQSVKDKPSLIICRTI 246 (663)
T ss_pred HHHHCCCCeEEEEEEEe
Confidence 66654 78999976543
No 293
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=33.89 E-value=1.8e+02 Score=23.76 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=21.0
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEee
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~ 272 (372)
++++|+..|.. +.+++..+++.|+++-+|+-
T Consensus 3 kkvLIanrGei---a~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 3 KKVLIANRGEI---AVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp SEEEESS-HHH---HHHHHHHHHHTTSEEEEEEE
T ss_pred CEEEEECCCHH---HHHHHHHHHHhCCcceeccC
Confidence 35777777777 55566666777998877764
No 294
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=33.60 E-value=2e+02 Score=22.43 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=41.2
Q ss_pred EEEEEeChhHHHHHHH----HHHHHhc--CCceeEEeecccCCCCHHHHHHHHhc-CCeEEEEcCCCCCCcHH-HHHHHH
Q 017410 241 ITLVGWGAQLSIMEQA----CLDAEKE--GISCELIDLKTLIPWDKETVEASVRK-TGRLLISHEAPVTGGFG-AEISAS 312 (372)
Q Consensus 241 i~ii~~G~~~~~a~~A----a~~L~~~--Gi~v~vi~~~~i~P~d~~~l~~~~~~-~~~vivvEe~~~~GGlg-~~i~~~ 312 (372)
++|++.|+....+.++ ++.+++. +..+.+--+..-.|--.+.+.+..+. .++|+++==.-..|... ..|...
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~~ 81 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDIPAA 81 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccHHHH
Confidence 6789999887655444 3344443 23444444444467667777765543 57887765554444432 244444
Q ss_pred HH
Q 017410 313 IL 314 (372)
Q Consensus 313 l~ 314 (372)
+.
T Consensus 82 ~~ 83 (101)
T cd03416 82 LA 83 (101)
T ss_pred HH
Confidence 43
No 295
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=33.50 E-value=2.8e+02 Score=26.61 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=21.9
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEe
Q 017410 175 HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFE 208 (372)
Q Consensus 175 ~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~ 208 (372)
.+|++. +.-.|+.++...++.|++ .++|++|-.
T Consensus 189 G~~~~~-Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 189 GIPGIR-VDGNDVLAVYEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred CCCEEE-ECCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 455543 334467888888887774 578999843
No 296
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=33.26 E-value=2.7e+02 Score=23.97 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=68.9
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC-eEEEEcCCCCCCcHHHHHHHHHHHhc
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG-RLLISHEAPVTGGFGAEISASILERC 317 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~-~vivvEe~~~~GGlg~~i~~~l~~~~ 317 (372)
.+-+||+.-..+..++.+. +++-+++++.+-|-++...+.+.+...+ .+||.-+-...-..-..|+..+....
T Consensus 30 ~~~lIVGiDPG~ttgiAil------dL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~l 103 (138)
T PF04312_consen 30 RRYLIVGIDPGTTTGIAIL------DLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVL 103 (138)
T ss_pred CCCEEEEECCCceeEEEEE------ecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcc
Confidence 4567777765555444333 5677899999999999998888877764 66666555455555555554442211
Q ss_pred cccCCCcEEEEeccCCCcccccccCCCCcHHHHHHHHhCC--CChHHHHHhhhh
Q 017410 318 FLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLESFK--VPAQHCCMNLTA 369 (372)
Q Consensus 318 ~~~l~~~v~~ig~~~~~~~~lle~~~l~~~~~~~~i~~~~--~~~~~~~~~~~~ 369 (372)
+ .++ .-|+.++..+...+++ ..-+|-.++|.|
T Consensus 104 ----------y-~P~---------~dlsveeK~~l~~~~~~~~~n~HeRDALAA 137 (138)
T PF04312_consen 104 ----------Y-TPE---------RDLSVEEKQELAREYSERYENDHERDALAA 137 (138)
T ss_pred ----------c-CCC---------CcCCHHHHHHHHHhhCCCCCCchHHhHhhc
Confidence 1 122 1256677777788888 888888888876
No 297
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=32.91 E-value=1.7e+02 Score=31.48 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=57.0
Q ss_pred EEEEeChhHHHHHHHHHHHH----hcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHH---HHHHHHH
Q 017410 242 TLVGWGAQLSIMEQACLDAE----KEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGA---EISASIL 314 (372)
Q Consensus 242 ~ii~~G~~~~~a~~Aa~~L~----~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~---~i~~~l~ 314 (372)
+.|-|||.++.+.+.|+.|. +.|+++.++++..+.| + .+.+.+.++++--.+-.|-.-. .+.+.|.
T Consensus 64 v~IlygSqTGnae~lA~~la~~l~~~g~~~~v~~~~d~~~---~----~L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~ 136 (600)
T PRK10953 64 ITLISASQTGNARRVAEQLRDDLLAAKLNVNLVNAGDYKF---K----QIAQEKLLIVVTSTQGEGEPPEEAVALHKFLF 136 (600)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHhCCCCcEEechHhCCH---h----HhccCCeEEEEECCCCCCCCChhHHHHHHHHh
Confidence 45568999888888776654 4589999988776543 2 2445566777655543443322 3344454
Q ss_pred HhccccCC-CcEEEEeccCCCcccccccCCCCcHHHHHHHHhC
Q 017410 315 ERCFLRLE-APVARVCGLDTPFPLVFEPFYMPTKNKASCLESF 356 (372)
Q Consensus 315 ~~~~~~l~-~~v~~ig~~~~~~~~lle~~~l~~~~~~~~i~~~ 356 (372)
...-..+. .++.-+|.-|..| ++|.-....+-+++.+.
T Consensus 137 ~~~~~~L~~~~faVfGLGDssY----~~Fc~~~k~ld~rL~~l 175 (600)
T PRK10953 137 SKKAPKLENTAFAVFGLGDTSY----EFFCQAGKDFDSKLAEL 175 (600)
T ss_pred hCcCcCCCCCEEEEEccCccCH----HHHHHHHHHHHHHHHHC
Confidence 32111122 3445555555544 34444455555555443
No 298
>COG1945 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) [Amino acid transport and metabolism]
Probab=32.33 E-value=51 Score=29.11 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=51.7
Q ss_pred EEEEeChhHHH-HHHHHH-HHHhcCC-ceeEEeecccCCCCH------HHHHHHHhcCCeEE-EEcCCCCCCcHHHHHHH
Q 017410 242 TLVGWGAQLSI-MEQACL-DAEKEGI-SCELIDLKTLIPWDK------ETVEASVRKTGRLL-ISHEAPVTGGFGAEISA 311 (372)
Q Consensus 242 ~ii~~G~~~~~-a~~Aa~-~L~~~Gi-~v~vi~~~~i~P~d~------~~l~~~~~~~~~vi-vvEe~~~~GGlg~~i~~ 311 (372)
+.+++|...+. =+.+-+ .|++.|| ++.++.+++|-|=.- |.|.+ + +.+.++ +|.-+..+-+-|+.|++
T Consensus 9 vf~t~G~Ge~~t~L~aFd~AL~dAgI~~~NLV~vSSIlPp~~~~V~~e~gl~k-l-~pG~iv~~V~Ar~~S~~~G~~isa 86 (163)
T COG1945 9 VFFTSGVGEGDTELNAFDAALLDAGIENFNLVPVSSILPPNCEIVDPEDGLPK-L-PPGAILFCVMARGTSNEPGRTISA 86 (163)
T ss_pred EEEEeccccCCchhHhHHHHHHhCCCcccceEEEecccCCcccccchhhcCCc-C-CCCcEEeEEEeecccCCCCceeee
Confidence 34555554322 222333 3778898 899999999999222 22333 3 334454 45555555556666553
Q ss_pred HHHHhccccCCCcEEEEeccCC--CcccccccCCCCcHHHHHHH
Q 017410 312 SILERCFLRLEAPVARVCGLDT--PFPLVFEPFYMPTKNKASCL 353 (372)
Q Consensus 312 ~l~~~~~~~l~~~v~~ig~~~~--~~~~lle~~~l~~~~~~~~i 353 (372)
.+ .++.+.+ -..++.|..++...+++.++
T Consensus 87 ai-------------g~a~p~D~~~~G~i~E~~~~~~~~~a~~~ 117 (163)
T COG1945 87 AI-------------GVAIPRDKSKGGYISEYAGFCETEVADEI 117 (163)
T ss_pred ee-------------eEEecCCCCcCcEEEeecccCcchhHHHH
Confidence 22 1222222 24567777777665444433
No 299
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=32.15 E-value=1.5e+02 Score=25.90 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=36.4
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHH--HHHHHhcCC
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKET--VEASVRKTG 291 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~--l~~~~~~~~ 291 (372)
+++++.|..-..++.++..|.+.|++|.|+-+.-..+++.+. -.+.+++.+
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g 81 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMG 81 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 457778888899999999999999999996665555666553 223454544
No 300
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=32.04 E-value=1e+02 Score=26.56 Aligned_cols=60 Identities=23% Similarity=0.178 Sum_probs=37.6
Q ss_pred CcEEEEEeChhH----HHHHHHHHHHHhcC----CceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 239 SDITLVGWGAQL----SIMEQACLDAEKEG----ISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 239 ~di~ii~~G~~~----~~a~~Aa~~L~~~G----i~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
++++|+++|+.. .....++++|++.+ -++++++..+.-|-....+. .+.+++++|+||--
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~~~l~~~~-~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAPHFVFTLI-PQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHHHHHHHHh-hhcCCCEEEEEEcc
Confidence 468899999887 34667888887532 24788887664321111111 24577888888864
No 301
>PRK08105 flavodoxin; Provisional
Probab=30.99 E-value=56 Score=28.13 Aligned_cols=102 Identities=12% Similarity=0.097 Sum_probs=51.1
Q ss_pred EEEeChhHHHHHHHHHHH----HhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHH---HHHHHHHH
Q 017410 243 LVGWGAQLSIMEQACLDA----EKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGA---EISASILE 315 (372)
Q Consensus 243 ii~~G~~~~~a~~Aa~~L----~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~---~i~~~l~~ 315 (372)
.|-|||.++.+.+.++.| ++.|+++.++++..+.++. ..+.+.+|++--.+-.|-+-. .....+.+
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~-------~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~ 77 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQ-------PYQDELVLVVTSTTGQGDLPDSIVPLFQALKD 77 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchh-------cccCCeEEEEECCCCCCCCChhHHHHHHHHHh
Confidence 455788877777766554 4558999998876543321 122456666654443343332 23334443
Q ss_pred hccccCC-CcEEEEeccCCCcccccccCCCCcHHHHHHHHhC
Q 017410 316 RCFLRLE-APVARVCGLDTPFPLVFEPFYMPTKNKASCLESF 356 (372)
Q Consensus 316 ~~~~~l~-~~v~~ig~~~~~~~~lle~~~l~~~~~~~~i~~~ 356 (372)
.. ..+. .++.-+|.-|..+ ++|.--...+-+++++.
T Consensus 78 ~~-~~l~~~~~avfGlGds~Y----~~fc~~~~~ld~~l~~l 114 (149)
T PRK08105 78 TA-GYQPNLRYGVIALGDSSY----DNFCGAGKQFDALLQEQ 114 (149)
T ss_pred cC-cccCCCEEEEEeeecCCH----HHHHHHHHHHHHHHHHC
Confidence 21 0122 2344444444433 33444444444555543
No 302
>PRK08114 cystathionine beta-lyase; Provisional
Probab=30.60 E-value=1.1e+02 Score=30.84 Aligned_cols=20 Identities=0% Similarity=0.084 Sum_probs=9.1
Q ss_pred CHHHHHHHHhcCCeEEEEcC
Q 017410 279 DKETVEASVRKTGRLLISHE 298 (372)
Q Consensus 279 d~~~l~~~~~~~~~vivvEe 298 (372)
|.+.+.+.++...++|++|-
T Consensus 136 d~~~l~~~l~~~TrlV~~Et 155 (395)
T PRK08114 136 IGADIAKLIQPNTKVVFLES 155 (395)
T ss_pred CHHHHHHhcCCCceEEEEEC
Confidence 44444444443334445544
No 303
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=30.32 E-value=2.5e+02 Score=27.21 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=10.6
Q ss_pred CCceeEEeecccCCCCHHHHHHHHh
Q 017410 264 GISCELIDLKTLIPWDKETVEASVR 288 (372)
Q Consensus 264 Gi~v~vi~~~~i~P~d~~~l~~~~~ 288 (372)
|.++..+.+..-..+|.+.+.+.++
T Consensus 101 g~~~~~v~~~~~~~~d~~~l~~~l~ 125 (363)
T TIGR02326 101 GIPHHVVDTGEVEPPDVVEVEAILA 125 (363)
T ss_pred CCceEEEeCCCCCCCCHHHHHHHHh
Confidence 4444444443323344444444443
No 304
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=30.22 E-value=1.4e+02 Score=25.53 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=35.7
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC--eEEEE
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG--RLLIS 296 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~--~vivv 296 (372)
++|++=|.....+.++++.|++.|+.+-+|-+.. .+.+.|.+...+.. ++..+
T Consensus 107 iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~ 161 (164)
T cd01482 107 VILITDGKSQDDVELPARVLRNLGVNVFAVGVKD---ADESELKMIASKPSETHVFNV 161 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc---CCHHHHHHHhCCCchheEEEc
Confidence 4566666555566788899999898877776643 46778887776543 44444
No 305
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=30.12 E-value=1.2e+02 Score=29.21 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=21.2
Q ss_pred CCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 264 GISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 264 Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
++.+=+++ ++=.+++.+.+.+.++.+..|+-+=+.
T Consensus 130 ~~pvilYn-~~g~~l~~~~~~~La~~~~nvvgiKds 164 (296)
T TIGR03249 130 DLGVIVYQ-RDNAVLNADTLERLADRCPNLVGFKDG 164 (296)
T ss_pred CCCEEEEe-CCCCCCCHHHHHHHHhhCCCEEEEEeC
Confidence 45666666 444467777777666546666666443
No 306
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=29.70 E-value=2.1e+02 Score=25.68 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCceeEEeecccCCC----------CHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHH
Q 017410 251 SIMEQACLDAEKEGISCELIDLKTLIPW----------DKETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (372)
Q Consensus 251 ~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~----------d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l 313 (372)
..+..+++.|+++|.+++++++..+.+- +.+.+.+.++..+.+|+.---| .|++...+..++
T Consensus 18 ~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~s~pg~LKn~i 89 (191)
T PRK10569 18 ALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY-KASFSGALKTLL 89 (191)
T ss_pred HHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-CCCCCHHHHHHH
Confidence 3455566678888999999998764431 2234556677788777664433 566666665555
No 307
>PRK07308 flavodoxin; Validated
Probab=29.50 E-value=2.3e+02 Score=23.73 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=32.6
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
|++-..|...++.|++.|+.+.+.++....+ + .+.+.+.|++.=-.+-.|-+...+...+.
T Consensus 13 GnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~---~----~l~~~d~vi~g~~t~g~G~~p~~~~~fl~ 73 (146)
T PRK07308 13 GNTEEIADIVADKLRELGHDVDVDECTTVDA---S----DFEDADIAIVATYTYGDGELPDEIVDFYE 73 (146)
T ss_pred chHHHHHHHHHHHHHhCCCceEEEecccCCH---h----HhccCCEEEEEeCccCCCCCCHHHHHHHH
Confidence 3344445555566777788898888766432 2 23455555554333222335445554443
No 308
>PRK06703 flavodoxin; Provisional
Probab=29.44 E-value=1.7e+02 Score=24.68 Aligned_cols=64 Identities=8% Similarity=0.042 Sum_probs=34.0
Q ss_pred EEEeChhHHH----HHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHH
Q 017410 243 LVGWGAQLSI----MEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (372)
Q Consensus 243 ii~~G~~~~~----a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l 313 (372)
+|.|+|+++. |...++.|++.|+++.+.++....+ + .+.+++.|++.=-.+-.|-+...+...+
T Consensus 5 ~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~----~l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 5 LIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDA---E----ELLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCH---H----HHhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 4444555444 4444555666788999988765432 2 2445666665442222344444444443
No 309
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=29.29 E-value=62 Score=28.47 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=36.0
Q ss_pred EEEEEeChh----HHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 241 ITLVGWGAQ----LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 241 i~ii~~G~~----~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
+++++=|.. .....++++.|+++|+.+-.|-+ ...+.+.|.+.+.+.+.++.+.++
T Consensus 107 villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv---~~~~~~~L~~iA~~~~~~f~~~~~ 166 (185)
T cd01474 107 IIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGV---TDFLKSQLINIADSKEYVFPVTSG 166 (185)
T ss_pred EEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEee---chhhHHHHHHHhCCCCeeEecCcc
Confidence 445555544 12345566788888887666665 557888888877777776645444
No 310
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=29.28 E-value=40 Score=27.48 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=24.8
Q ss_pred eCCcEEEEEeChhHHH-HHHHHHHHHhcCCceeEEeec
Q 017410 237 EGSDITLVGWGAQLSI-MEQACLDAEKEGISCELIDLK 273 (372)
Q Consensus 237 ~g~di~ii~~G~~~~~-a~~Aa~~L~~~Gi~v~vi~~~ 273 (372)
+..|++||++|..... -.+..+.|++.||.+++.+-.
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 4678999999976432 445666788889999988744
No 311
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=29.19 E-value=1.4e+02 Score=25.47 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=35.4
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC--CeEEEEc
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT--GRLLISH 297 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~--~~vivvE 297 (372)
+++++-|.......+++..|++.|+.+-.|-+.. -|.+.|.+..... +.++.++
T Consensus 107 iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~ 162 (164)
T cd01472 107 LVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKN---ADEEELKQIASDPKELYVFNVA 162 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCc---CCHHHHHHHHCCCchheEEecc
Confidence 4566666554445556667888888777776554 3888888877665 4555554
No 312
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=29.09 E-value=2.2e+02 Score=21.90 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=42.5
Q ss_pred EEEEEeChhHH-----HHHHHHHHHHhc--CCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcCCCCCCcHHH-HHHH
Q 017410 241 ITLVGWGAQLS-----IMEQACLDAEKE--GISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGA-EISA 311 (372)
Q Consensus 241 i~ii~~G~~~~-----~a~~Aa~~L~~~--Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe~~~~GGlg~-~i~~ 311 (372)
+++++.|+... ...+.++.|++. ...+.+--.....|.-.+.+.+..+ +.++|+++=-....|.=.. .+..
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~~~di~~ 81 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEVFYDIDS 81 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccccChhhHHHHHH
Confidence 56788887653 334445556554 3455555554458887777777544 3578888776654333222 3444
Q ss_pred HHH
Q 017410 312 SIL 314 (372)
Q Consensus 312 ~l~ 314 (372)
.+.
T Consensus 82 ~~~ 84 (101)
T cd03409 82 EIG 84 (101)
T ss_pred HHH
Confidence 443
No 313
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=28.70 E-value=2.4e+02 Score=27.87 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=20.5
Q ss_pred CCCCcEEEeeCCHHHHHHHHH----HhHhCCCcEEEEe
Q 017410 175 HVPGLKVVIPRSPRQAKGLLL----SCIRDPNPVVFFE 208 (372)
Q Consensus 175 ~iP~l~V~~Psd~~e~~~~l~----~a~~~~~Pv~ir~ 208 (372)
.+|++.| .=.|..++...++ .+.+.++|++|-.
T Consensus 220 G~~~~~V-dg~d~~av~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 220 GLPGIEV-DGMDVLAVREVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred CCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5787755 4456655554444 4445688999844
No 314
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=28.44 E-value=2.6e+02 Score=27.68 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=47.2
Q ss_pred eCCcEEEEEeCh-hHHHHHHHHHHHHhcCCc---eeEEeecccCCCCHHH-----HHHHHhcCCeEEEEcCCCCCCcHHH
Q 017410 237 EGSDITLVGWGA-QLSIMEQACLDAEKEGIS---CELIDLKTLIPWDKET-----VEASVRKTGRLLISHEAPVTGGFGA 307 (372)
Q Consensus 237 ~g~di~ii~~G~-~~~~a~~Aa~~L~~~Gi~---v~vi~~~~i~P~d~~~-----l~~~~~~~~~vivvEe~~~~GGlg~ 307 (372)
.|+. +|+++|. ...+..+|++.+++.|-+ +.+++..+-.|-+.+. |...-+.++..|-+-+|. .|...
T Consensus 132 ~gkP-vilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt--~G~~~ 208 (329)
T TIGR03569 132 FGKP-VILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHT--LGIEA 208 (329)
T ss_pred cCCc-EEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCC--ccHHH
Confidence 3444 5778885 568899999999988864 8899988888877653 332222344445567775 45544
Q ss_pred HHHHH
Q 017410 308 EISAS 312 (372)
Q Consensus 308 ~i~~~ 312 (372)
.+++.
T Consensus 209 ~~aAv 213 (329)
T TIGR03569 209 PIAAV 213 (329)
T ss_pred HHHHH
Confidence 44433
No 315
>PRK10329 glutaredoxin-like protein; Provisional
Probab=28.37 E-value=2.4e+02 Score=21.44 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=37.6
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHH-hcCC--eEEEEcCCCCCCcHHH
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV-RKTG--RLLISHEAPVTGGFGA 307 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~-~~~~--~vivvEe~~~~GGlg~ 307 (372)
++|.+. ..-..+..+.+.|++.||+.+.+++.. |.+...+.- .... .++++++.. .+||..
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~-~~Gf~~ 66 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLS-WSGFRP 66 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEE-EecCCH
Confidence 455554 445788888999999999999999875 333322211 1222 556666643 456643
No 316
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=28.33 E-value=2.4e+02 Score=23.66 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=36.7
Q ss_pred cEEEEEeChhHHHHHHHHHH----HHhc-CCceeEEeecccCCCCHHHHHHHHh-cCCeEEEE
Q 017410 240 DITLVGWGAQLSIMEQACLD----AEKE-GISCELIDLKTLIPWDKETVEASVR-KTGRLLIS 296 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~----L~~~-Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivv 296 (372)
-++||+.||--..+.+.... +++. ++.+.+--+..-.|--.+.+.+..+ ++++++|+
T Consensus 2 ~lllvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVv 64 (125)
T cd03415 2 AIIIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIA 64 (125)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEe
Confidence 36899999987666555444 4332 4555555555556766677777655 46788887
No 317
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=28.15 E-value=1.7e+02 Score=29.84 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=38.5
Q ss_pred CcEEEEEeCh-hHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcCC
Q 017410 239 SDITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEA 299 (372)
Q Consensus 239 ~di~ii~~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe~ 299 (372)
.++.|+.++. ....|++.++.|+++|+.+++ +... +++ .+.+..+-+ +...++++.+.
T Consensus 326 ~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~vei-d~~~-~~l-~k~~k~A~~~~~~~viiiG~~ 385 (430)
T CHL00201 326 IDVYIATQGLKAQKKGWEIIQFLEKQNIKFEL-DLSS-SNF-HKQIKQAGKKRAKACIILGDN 385 (430)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEE-eeCC-CCH-HHHHHHHHHcCCCEEEEEech
Confidence 4677777675 457789999999999999887 4433 444 344544433 34677777663
No 318
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=27.58 E-value=3.3e+02 Score=28.86 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=26.9
Q ss_pred CCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 177 PGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 177 P~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
-|...+.-.++.|++..++.|+..++|++|
T Consensus 497 ~G~~g~~v~~~~el~~al~~al~~~~p~li 526 (550)
T COG0028 497 YGAKGIRVETPEELEEALEEALASDGPVLI 526 (550)
T ss_pred cCCeeEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 366777778999999999999999999988
No 319
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=27.39 E-value=46 Score=27.62 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=27.0
Q ss_pred eeCCcEEEEEeChhH-HHHHHHHHHHHhcCCceeEEeec
Q 017410 236 REGSDITLVGWGAQL-SIMEQACLDAEKEGISCELIDLK 273 (372)
Q Consensus 236 ~~g~di~ii~~G~~~-~~a~~Aa~~L~~~Gi~v~vi~~~ 273 (372)
.+..+++||++|... ..--+..+.|++.||.+++.+-.
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 345689999999854 22335557788889999888743
No 320
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=27.24 E-value=1.5e+02 Score=27.05 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=39.1
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC--CeEEEEcCC
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT--GRLLISHEA 299 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~--~~vivvEe~ 299 (372)
++|++-|.......++++.|++.|+.+-.|-+.. .|.+.|.+.+... +.++.+++-
T Consensus 112 villTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~---~~~~~L~~ias~~~~~~~f~~~~~ 169 (224)
T cd01475 112 GIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR---ADEEELREIASEPLADHVFYVEDF 169 (224)
T ss_pred EEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc---CCHHHHHHHhCCCcHhcEEEeCCH
Confidence 4567777655566778888999998877777654 5788888877543 355655553
No 321
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=27.15 E-value=4.8e+02 Score=23.68 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=24.5
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCC--ceeEEe
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGI--SCELID 271 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi--~v~vi~ 271 (372)
.++++|+.|+.....+..++.+.+++- ++.++.
T Consensus 110 ~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l~~ 144 (238)
T cd06211 110 RPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFF 144 (238)
T ss_pred CCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 679999999988888877777766553 455554
No 322
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=26.97 E-value=5.3e+02 Score=24.20 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=40.5
Q ss_pred EEEEEeCh-hHHHHHHHHHHH-HhcCCceeEEeecccCCCCHHH-----HHHHHhcCCeEEEEcCCCCCCcHHHHHH
Q 017410 241 ITLVGWGA-QLSIMEQACLDA-EKEGISCELIDLKTLIPWDKET-----VEASVRKTGRLLISHEAPVTGGFGAEIS 310 (372)
Q Consensus 241 i~ii~~G~-~~~~a~~Aa~~L-~~~Gi~v~vi~~~~i~P~d~~~-----l~~~~~~~~~vivvEe~~~~GGlg~~i~ 310 (372)
=+|+++|. ...++.+|++.+ +..+.++.+++..+-.|-+.+. |...-+..+..|=+-+|.. |+...++
T Consensus 115 PvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDHt~--g~~~~~~ 189 (241)
T PF03102_consen 115 PVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDHTD--GIEAPIA 189 (241)
T ss_dssp -EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-SS--SSHHHHH
T ss_pred cEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCCCC--CcHHHHH
Confidence 35788885 568899999999 4457899999999999988764 3222224565566888864 4444444
No 323
>PRK09739 hypothetical protein; Provisional
Probab=26.67 E-value=3.3e+02 Score=24.21 Aligned_cols=64 Identities=17% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcCCceeEEeecccC--C------------------CCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHH
Q 017410 250 LSIMEQACLDAEKEGISCELIDLKTLI--P------------------WDKETVEASVRKTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 250 ~~~a~~Aa~~L~~~Gi~v~vi~~~~i~--P------------------~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i 309 (372)
...+...++.+++.|.+++++|+.-.. | -+.+.+.+.+...+.+|+.=--+ .+++...+
T Consensus 20 ~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y-~~~~Pa~L 98 (199)
T PRK09739 20 AKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLW-WYSFPAML 98 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchh-hhcchHHH
Confidence 444556667788889999999986532 1 11245666777888777654333 57777777
Q ss_pred HHHHH
Q 017410 310 SASIL 314 (372)
Q Consensus 310 ~~~l~ 314 (372)
..++-
T Consensus 99 K~~iD 103 (199)
T PRK09739 99 KGYID 103 (199)
T ss_pred HHHHH
Confidence 66653
No 324
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.62 E-value=5.2e+02 Score=25.69 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCCCcHHHHHHHHHHHhcc
Q 017410 290 TGRLLISHEAPVTGGFGAEISASILERCF 318 (372)
Q Consensus 290 ~~~vivvEe~~~~GGlg~~i~~~l~~~~~ 318 (372)
..+|+++ + .||+|+.++..|...|+
T Consensus 135 ~~~Vlvv--G--~GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 135 EARVLLI--G--AGGLGSPAALYLAAAGV 159 (376)
T ss_pred cCcEEEE--C--CCHHHHHHHHHHHHcCC
Confidence 3467777 4 59999999999988774
No 325
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=26.36 E-value=2.8e+02 Score=27.73 Aligned_cols=33 Identities=27% Similarity=0.192 Sum_probs=24.9
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHhHhC---CCcEEEEe
Q 017410 175 HVPGLKVVIPRSPRQAKGLLLSCIRD---PNPVVFFE 208 (372)
Q Consensus 175 ~iP~l~V~~Psd~~e~~~~l~~a~~~---~~Pv~ir~ 208 (372)
.+|++. +.=.|..++..+++.|.+. ++|++|-.
T Consensus 221 ~~p~~~-VDG~D~~av~~a~~~A~~~aR~~gP~lIe~ 256 (362)
T PLN02269 221 YVPGLK-VDGMDVLAVKQACKFAKEHALSNGPIVLEM 256 (362)
T ss_pred CCCeEE-ECCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 578774 4778888888888887753 78999944
No 326
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=26.17 E-value=5.5e+02 Score=24.09 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=59.2
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCC-c----------H
Q 017410 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTG-G----------F 305 (372)
Q Consensus 237 ~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~G-G----------l 305 (372)
.|-++.|+.++.....- ++.+.|.+++++-=|+--.. .+.+.+....+..-++|+++.....- + -
T Consensus 30 ~Gy~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~~---~~~~~l~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~a 105 (279)
T PF00532_consen 30 HGYQLLLCNTGDDEEKE-EYIELLLQRRVDGIILASSE---NDDEELRRLIKSGIPVVLIDRYIDNPEGVPSVYIDNYEA 105 (279)
T ss_dssp TTCEEEEEEETTTHHHH-HHHHHHHHTTSSEEEEESSS---CTCHHHHHHHHTTSEEEEESS-SCTTCTSCEEEEEHHHH
T ss_pred cCCEEEEecCCCchHHH-HHHHHHHhcCCCEEEEeccc---CChHHHHHHHHcCCCEEEEEeccCCcccCCEEEEcchHH
Confidence 46678888888777666 88888988887766665222 23456666666656888888763222 2 2
Q ss_pred HHHHHHHHHHhccccCCCc-EEEEeccCC
Q 017410 306 GAEISASILERCFLRLEAP-VARVCGLDT 333 (372)
Q Consensus 306 g~~i~~~l~~~~~~~l~~~-v~~ig~~~~ 333 (372)
+....++|.+.| ..+ |.-++++..
T Consensus 106 ~~~a~~~Li~~G----h~~~I~~i~~~~~ 130 (279)
T PF00532_consen 106 GYEATEYLIKKG----HRRPIAFIGGPED 130 (279)
T ss_dssp HHHHHHHHHHTT----CCSTEEEEEESTT
T ss_pred HHHHHHHHHhcc----cCCeEEEEecCcc
Confidence 456777888887 345 777877654
No 327
>PLN02573 pyruvate decarboxylase
Probab=25.77 E-value=5.2e+02 Score=27.40 Aligned_cols=149 Identities=11% Similarity=0.069 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecch-h-HHHHHHHHHHHHhcC-CeeEEEe
Q 017410 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEI 116 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GI-a-E~~~vg~A~GlA~~G-~~pi~~i 116 (372)
+.. ..+.+.|.+.+..| .+++. |.+ .++.....+... .+.+|+..+- . =...+..|.|++++- -++++.+
T Consensus 380 i~~-~~~~~~l~~~l~~d-~iiv~--D~G--~~~~~~~~~~~~-~~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i 452 (578)
T PLN02573 380 LRV-NVLFKHIQKMLSGD-TAVIA--ETG--DSWFNCQKLKLP-EGCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIAC 452 (578)
T ss_pred cCH-HHHHHHHHHhcCCC-CEEEE--ecc--cchhhHHhccCC-CCCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEE
Confidence 443 33666677766543 44443 333 222111222211 1445655442 1 112445667766652 3555554
Q ss_pred cccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCC-----CCCCCC--ChhHH-HHHcCCC---C-cEEE
Q 017410 117 QFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-----HGGHYH--SQSPE-AFFCHVP---G-LKVV 182 (372)
Q Consensus 117 ~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g-----~~G~~H--s~~d~-a~l~~iP---~-l~V~ 182 (372)
-++.. +-....|- .+... ++ |++++ ...|.++ .+.... ..-|. .+.+.+. + +.-.
T Consensus 453 -~GDG~f~m~~~EL~-Ta~r~--------~l-pvv~vV~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~ 521 (578)
T PLN02573 453 -IGDGSFQVTAQDVS-TMIRC--------GQ-KSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTA 521 (578)
T ss_pred -EeccHHHhHHHHHH-HHHHc--------CC-CCEEEEEeCCceeEEEeecccCccccCCCCHHHHHHHhcCcCCceeEE
Confidence 45552 33333333 23322 35 65554 3333322 111101 11133 4555552 3 7788
Q ss_pred eeCCHHHHHHHHHHhHh--CCCcEEE
Q 017410 183 IPRSPRQAKGLLLSCIR--DPNPVVF 206 (372)
Q Consensus 183 ~Psd~~e~~~~l~~a~~--~~~Pv~i 206 (372)
.-.+..|+..+++.++. .++|.+|
T Consensus 522 ~V~~~~eL~~al~~a~~~~~~~p~li 547 (578)
T PLN02573 522 KVRTEEELIEAIATATGEKKDCLCFI 547 (578)
T ss_pred EecCHHHHHHHHHHHHhhCCCCcEEE
Confidence 88999999999999984 6899999
No 328
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.50 E-value=1.5e+02 Score=22.13 Aligned_cols=59 Identities=22% Similarity=0.163 Sum_probs=39.0
Q ss_pred EEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhc
Q 017410 243 LVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERC 317 (372)
Q Consensus 243 ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~ 317 (372)
+|+. ..++.|++|-+.|+++|+++.++ |.|.+. -..++-.+-++... -+.+...|.+++
T Consensus 5 ~i~F-~st~~a~~~ek~lk~~gi~~~li------P~P~~i----~~~CG~al~~~~~d-----~~~i~~~l~~~~ 63 (73)
T PF11823_consen 5 LITF-PSTHDAMKAEKLLKKNGIPVRLI------PTPREI----SAGCGLALRFEPED-----LEKIKEILEENG 63 (73)
T ss_pred EEEE-CCHHHHHHHHHHHHHCCCcEEEe------CCChhc----cCCCCEEEEEChhh-----HHHHHHHHHHCC
Confidence 4454 45667888999999999999887 666552 22455556665532 255666666665
No 329
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=25.44 E-value=3.7e+02 Score=21.83 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=26.6
Q ss_pred EEeChhHHHHHH----HHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEc
Q 017410 244 VGWGAQLSIMEQ----ACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISH 297 (372)
Q Consensus 244 i~~G~~~~~a~~----Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvE 297 (372)
|-++|+++...+ .++.+++.|.++.++++....| +. +..++.+++.-
T Consensus 3 Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~---~~----l~~~d~iilgs 53 (140)
T TIGR01753 3 IVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADA---ED----LLSYDAVLLGC 53 (140)
T ss_pred EEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCH---HH----HhcCCEEEEEc
Confidence 344555544444 4455666688999998776543 22 23455655543
No 330
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=25.35 E-value=2.4e+02 Score=28.67 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=32.5
Q ss_pred cCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcE-EEEeccCCCcc
Q 017410 289 KTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPV-ARVCGLDTPFP 336 (372)
Q Consensus 289 ~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v-~~ig~~~~~~~ 336 (372)
+.|+|++|||....|.-.+.|...+.+.|- ..| .|+..++..+|
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaGA----keVh~riAsPpi~~p 399 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAGA----KEVHIRIASPPIKYP 399 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcCC----cEEEEEecCCccccc
Confidence 457999999999999999999999988872 223 25655555444
No 331
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=25.27 E-value=2.8e+02 Score=25.65 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=46.2
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhcc
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCF 318 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~ 318 (372)
.++.||--=|.++.| +.+| |+...=+.+.++.+-+.+.+...+....+++++-++.. --.+|+..|.++|+
T Consensus 95 ~~v~iIPgiSS~q~a---~ARl---g~~~~~~~~islHgr~~~~l~~~~~~~~~~vil~~~~~---~P~~IA~~L~~~G~ 165 (210)
T COG2241 95 EEVEIIPGISSVQLA---AARL---GWPLQDTEVISLHGRPVELLRPLLENGRRLVILTPDDF---GPAEIAKLLTENGI 165 (210)
T ss_pred cceEEecChhHHHHH---HHHh---CCChHHeEEEEecCCCHHHHHHHHhCCceEEEeCCCCC---CHHHHHHHHHhCCC
Confidence 457777633444433 3345 66544444444557888888888877778888766641 24789999999885
No 332
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=25.23 E-value=6.2e+02 Score=24.39 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCeeEEEecccccHH----HHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCC-Ch---hHH-
Q 017410 100 GFAIGLAAMGNRAIAEIQFADYIF----PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQ---SPE- 170 (372)
Q Consensus 100 g~A~GlA~~G~~pi~~i~~~~F~~----ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~H-s~---~d~- 170 (372)
.++..+..-|.+.|++++|.-.+. ...-++....|... -+ +.+..+...+.++.|..- +| +++
T Consensus 121 ~i~~~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~l-------Gi-~fv~~taPDP~sd~gv~gaqqfIlE~vp 192 (275)
T PF12683_consen 121 TIVWAAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDL-------GI-KFVEVTAPDPTSDVGVAGAQQFILEDVP 192 (275)
T ss_dssp HHHHHHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHC-------T---EEEEEE---SSTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHc-------CC-eEEEEeCCCCCCCCCcHHHHHHHHHHHH
Confidence 344444556999999988887762 22222333444321 13 444443333333323222 12 444
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCC
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPN 202 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~ 202 (372)
+|+..--.=+-|.+++....+-+++.++++.+
T Consensus 193 ~~i~kYGkdtaff~TN~a~~epllk~~~~~g~ 224 (275)
T PF12683_consen 193 KWIKKYGKDTAFFCTNDAMTEPLLKQALEYGG 224 (275)
T ss_dssp HHHHHH-S--EEEESSHHHHHHHHHHHHHH--
T ss_pred HHHHHhCCceeEEecCccccHHHHHHHHHcCC
Confidence 56654333346667777777999999998644
No 333
>PRK05569 flavodoxin; Provisional
Probab=25.07 E-value=1.8e+02 Score=24.15 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=18.1
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeeccc
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTL 275 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i 275 (372)
|++-..|...++.+++.|.++.++++...
T Consensus 13 GnT~~iA~~i~~~~~~~g~~v~~~~~~~~ 41 (141)
T PRK05569 13 GNVEVLANTIADGAKEAGAEVTIKHVADA 41 (141)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEECCcC
Confidence 44445555555566666888888776553
No 334
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=24.31 E-value=2.3e+02 Score=28.31 Aligned_cols=57 Identities=21% Similarity=0.156 Sum_probs=36.9
Q ss_pred CcEEEEEeCh-hHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHH-hcCCeEEEEcC
Q 017410 239 SDITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV-RKTGRLLISHE 298 (372)
Q Consensus 239 ~di~ii~~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~-~~~~~vivvEe 298 (372)
.++.|++.+. ....+++.+..|++.|+.+.+ +... +++ .+.+..+- .+...++++.+
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~-~~~~-~~l-~k~~~~a~~~g~~~~i~ig~ 381 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEV-DLGG-RKL-KKQLKYADKLGARFAVILGE 381 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEE-eCCC-CCH-HHHHHHHHHcCCCEEEEECh
Confidence 4677777775 457788899999999999875 3332 444 33444332 24567777765
No 335
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=24.26 E-value=5.1e+02 Score=25.92 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhc--CCeeEEEecccccH---HHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCC--h
Q 017410 95 EQGIVGFAIGLAAM--GNRAIAEIQFADYI---FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS--Q 167 (372)
Q Consensus 95 E~~~vg~A~GlA~~--G~~pi~~i~~~~F~---~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs--~ 167 (372)
+|-=+|..+|+|.. +..-++..-|.+.. ...|+.+- -++. | ++ |+|+++-+..+|- |++|. .
T Consensus 169 AQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~N-MA~L--W------~L-P~IFvCENN~yGM-GTs~~Ras 237 (394)
T KOG0225|consen 169 AQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFN-MAAL--W------KL-PVIFVCENNHYGM-GTSAERAS 237 (394)
T ss_pred cCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhh-HHHH--h------CC-CEEEEEccCCCcc-Ccchhhhh
Confidence 33334444444443 33333332477775 34555543 2333 4 47 9999976555443 44442 1
Q ss_pred hHHH-HHc--CCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecc
Q 017410 168 SPEA-FFC--HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPK 210 (372)
Q Consensus 168 ~d~a-~l~--~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~ 210 (372)
.+-. |.| -|||+.| .-.|.--++++.++|.+ .++|.++-..+
T Consensus 238 a~teyykRG~yiPGl~V-dGmdvlaVr~a~KfA~~~~~~g~GPilmE~~T 286 (394)
T KOG0225|consen 238 ASTEYYKRGDYIPGLKV-DGMDVLAVREATKFAKKYALEGKGPILMEMDT 286 (394)
T ss_pred cChHHHhccCCCCceEE-CCcchhhHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 1222 333 4999854 56666666777776665 48999985443
No 336
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=24.07 E-value=49 Score=27.03 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=25.8
Q ss_pred CcEEEEEeChhH-HHHHHHHHHHHhcCCceeEEeec
Q 017410 239 SDITLVGWGAQL-SIMEQACLDAEKEGISCELIDLK 273 (372)
Q Consensus 239 ~di~ii~~G~~~-~~a~~Aa~~L~~~Gi~v~vi~~~ 273 (372)
.+++||++|... ..-.+..+.|++.||.+++.+-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 689999999754 22344567788889999988744
No 337
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=23.96 E-value=3.3e+02 Score=23.67 Aligned_cols=64 Identities=8% Similarity=0.237 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHhcCCceeEEeecccCC--C--------CHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHH
Q 017410 249 QLSIMEQACLDAEKEGISCELIDLKTLIP--W--------DKETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (372)
Q Consensus 249 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P--~--------d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l 313 (372)
+...+..+++.+++.|.++++++++-+.. + +.+.+.+.++..+.+|++=--| .+++...+..++
T Consensus 15 t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~~sip~~LK~~i 88 (171)
T TIGR03567 15 SSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-KASYSGVLKALL 88 (171)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-cCCCCHHHHHHH
Confidence 34455566667877788999998865321 1 1234566677777777664333 577777776665
No 338
>PRK02948 cysteine desulfurase; Provisional
Probab=23.87 E-value=2.7e+02 Score=27.19 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=15.8
Q ss_pred CCHHHHHHHHhcCCeEEEEcCCCCCC
Q 017410 278 WDKETVEASVRKTGRLLISHEAPVTG 303 (372)
Q Consensus 278 ~d~~~l~~~~~~~~~vivvEe~~~~G 303 (372)
+|.+.|.+.+++++.++++|.-...|
T Consensus 155 ~~~~~I~~l~~~~~~~vivD~~~~~g 180 (381)
T PRK02948 155 QPIAEIGALLKKYNVLFHSDCVQTFG 180 (381)
T ss_pred hhHHHHHHHHHHcCCEEEEEChhhcc
Confidence 45666777777766666666543333
No 339
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=23.68 E-value=2e+02 Score=23.06 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=33.3
Q ss_pred cEEEEEeC----hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHH
Q 017410 240 DITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV 287 (372)
Q Consensus 240 di~ii~~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~ 287 (372)
++.++-.| +....+-++.+.|++.|++..+=-+.+.--=|.+.+.+.+
T Consensus 4 eisv~P~g~~~~s~s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev~~~i 55 (97)
T TIGR00106 4 EVSIIPIGTVGASVSSYVAAAIEVLKESGLKYELHPMGTLIEGDLDELFEAI 55 (97)
T ss_pred EEEEeecCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEecCHHHHHHHH
Confidence 56777777 5677788889999999998887666666443445444433
No 340
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=23.67 E-value=3.5e+02 Score=28.06 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=58.5
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHH---hcC-CceeEEeecccCCCCHH----------HHHHHHhcCCeEEEEcCCCCCC
Q 017410 238 GSDITLVGWGAQLSIMEQACLDAE---KEG-ISCELIDLKTLIPWDKE----------TVEASVRKTGRLLISHEAPVTG 303 (372)
Q Consensus 238 g~di~ii~~G~~~~~a~~Aa~~L~---~~G-i~v~vi~~~~i~P~d~~----------~l~~~~~~~~~vivvEe~~~~G 303 (372)
..|++|=---+....|+.-++++. .+| ++=..+-=.+|-|=... .+++.+ +-|+|++|||..+.|
T Consensus 283 eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v-~GKrVvlVDDSIVRG 361 (470)
T COG0034 283 EADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVV-KGKRVVLVDDSIVRG 361 (470)
T ss_pred cccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHh-CCCeEEEEccccccC
Confidence 356766555566677777776652 112 23334444456654422 122333 568999999999999
Q ss_pred cHHHHHHHHHHHhccccCCCcEE-EEeccCCCcc
Q 017410 304 GFGAEISASILERCFLRLEAPVA-RVCGLDTPFP 336 (372)
Q Consensus 304 Glg~~i~~~l~~~~~~~l~~~v~-~ig~~~~~~~ 336 (372)
--...|...+.+.| ...|+ +++.++..+|
T Consensus 362 TTsr~IV~mlReAG----AkEVHvriasP~i~~P 391 (470)
T COG0034 362 TTSRRIVQMLREAG----AKEVHVRIASPPIRYP 391 (470)
T ss_pred ccHHHHHHHHHHhC----CCEEEEEecCCCccCC
Confidence 99999999999887 23343 6766665444
No 341
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=23.65 E-value=4.1e+02 Score=23.76 Aligned_cols=68 Identities=7% Similarity=0.161 Sum_probs=40.7
Q ss_pred eChhHHHHHHHHHHHHhc-CCceeEEeecccCCCCHHHH---------------HHHHhcCCeEEEEcCCCCCCcHHHHH
Q 017410 246 WGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKETV---------------EASVRKTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~i~P~d~~~l---------------~~~~~~~~~vivvEe~~~~GGlg~~i 309 (372)
+|++...|...++.+++. |.++++++++... +.+.+ .+.+..++.|++-- ....|.+...+
T Consensus 11 ~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GS-Pty~g~~~~~l 87 (197)
T TIGR01755 11 YGHIETMARAVAEGAREVDGAEVVVKRVPETV--PEEVAEKSHGKTDQTAPVATPQELADYDAIIFGT-PTRFGNMASQM 87 (197)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeccccC--cHHHHHhccCCcccCCccCCHHHHHHCCEEEEEe-cccccCccHHH
Confidence 355666677777777764 8999999986532 22221 13345566655443 33367777777
Q ss_pred HHHHHHh
Q 017410 310 SASILER 316 (372)
Q Consensus 310 ~~~l~~~ 316 (372)
...+...
T Consensus 88 k~fld~~ 94 (197)
T TIGR01755 88 RNFLDQT 94 (197)
T ss_pred HHHHHhc
Confidence 7666553
No 342
>PRK14012 cysteine desulfurase; Provisional
Probab=23.55 E-value=3.9e+02 Score=26.49 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHhcCCeEEEEcCCCC
Q 017410 276 IPWDKETVEASVRKTGRLLISHEAPV 301 (372)
Q Consensus 276 ~P~d~~~l~~~~~~~~~vivvEe~~~ 301 (372)
.+.|.+.|.+.+++++-++++|+...
T Consensus 159 ~~~~~~~I~~la~~~g~~vivD~a~~ 184 (404)
T PRK14012 159 VIQDIAAIGEICRERGIIFHVDAAQS 184 (404)
T ss_pred chhhHHHHHHHHHHcCCEEEEEcchh
Confidence 34566777777777665555555543
No 343
>PRK12754 transketolase; Reviewed
Probab=23.52 E-value=7.9e+02 Score=26.79 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhhhhcCCCcccccEEE-EeCCCCCCCCCCCCC--hhHH-HHHcCCCCcEEEe---eCCHHHHHHHHHH
Q 017410 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTV-RAPYGAVGHGGHYHS--QSPE-AFFCHVPGLKVVI---PRSPRQAKGLLLS 196 (372)
Q Consensus 124 ra~dqi~~~~a~~~~~~~~~~~~~pvvi-~~~~G~~g~~G~~Hs--~~d~-a~l~~iP~l~V~~---Psd~~e~~~~l~~ 196 (372)
..+|.+. .++.+ ++..+|+ +..++..- +|.+.. .+|+ .-+++. ||.++. =.|..++.++++.
T Consensus 162 ~~~EA~~-~A~~~--------kL~nLi~ivD~N~~~i-dg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~ 230 (663)
T PRK12754 162 ISHEVCS-LAGTL--------KLGKLIAFYDDNGISI-DGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEE 230 (663)
T ss_pred HHHHHHH-HHHHh--------CCCCEEEEEEcCCCcc-CcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHH
Confidence 4666553 34443 3513444 45555432 233332 2444 455655 777654 3456666666666
Q ss_pred hHh-CCCcEEEEecccc
Q 017410 197 CIR-DPNPVVFFEPKWL 212 (372)
Q Consensus 197 a~~-~~~Pv~ir~p~~l 212 (372)
+.. .++|++|...+..
T Consensus 231 a~~~~~~Pt~I~~~T~~ 247 (663)
T PRK12754 231 ARAVTDKPSLLMCKTII 247 (663)
T ss_pred HHhcCCCCEEEEEEeee
Confidence 665 4789999765543
No 344
>PRK10646 ADP-binding protein; Provisional
Probab=23.42 E-value=1e+02 Score=26.94 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 017410 43 YSAINQALHIALETDPRAYVFGEDVGFGG 71 (372)
Q Consensus 43 ~~a~~~~L~~l~~~d~~vv~i~aD~~~gg 71 (372)
.+.+++.|.+.++ ..+++++..|+|.|.
T Consensus 14 t~~l~~~la~~l~-~g~vi~L~GdLGaGK 41 (153)
T PRK10646 14 TLDLGARVAKACD-GATVIYLYGDLGAGK 41 (153)
T ss_pred HHHHHHHHHHhCC-CCcEEEEECCCCCCH
Confidence 4677888877664 467999999999774
No 345
>PLN02651 cysteine desulfurase
Probab=23.34 E-value=4.2e+02 Score=25.81 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=15.8
Q ss_pred CCHHHHHHHHhcCCeEEEEcCCCCCC
Q 017410 278 WDKETVEASVRKTGRLLISHEAPVTG 303 (372)
Q Consensus 278 ~d~~~l~~~~~~~~~vivvEe~~~~G 303 (372)
.|.+.|.+.+++++-++++|.....|
T Consensus 155 ~~l~~I~~~~~~~g~~~~vD~a~~~g 180 (364)
T PLN02651 155 QPVEEIGELCREKKVLFHTDAAQAVG 180 (364)
T ss_pred ccHHHHHHHHHHcCCEEEEEcchhhC
Confidence 45666777776666666666654333
No 346
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=23.31 E-value=4.2e+02 Score=26.82 Aligned_cols=87 Identities=23% Similarity=0.187 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCccccchh-----HHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecccc
Q 017410 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTG-----LADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFAD 120 (372)
Q Consensus 46 ~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~-----~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~ 120 (372)
+.+-|+++.++.++|++=-+|+..+|+-+.-.- +.++.|.+|+|-.--+=|+-++.|...|+-|+.-.+. +-+.
T Consensus 127 ~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~v~-mgAe 205 (477)
T KOG1395|consen 127 RAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCTVY-MGAE 205 (477)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCceEEE-echh
Confidence 567788888889999999999985555332111 5667788888876668899999999999999998887 4554
Q ss_pred cH-HHHHHHHHHHH
Q 017410 121 YI-FPAFDQIVNEA 133 (372)
Q Consensus 121 F~-~ra~dqi~~~~ 133 (372)
=. ..++.-+|+.+
T Consensus 206 d~~rqalnvfrmrl 219 (477)
T KOG1395|consen 206 DYRRQALNVFRMRL 219 (477)
T ss_pred HHHHHHHHHHHHHH
Confidence 44 55666666443
No 347
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=23.29 E-value=2.5e+02 Score=28.10 Aligned_cols=57 Identities=21% Similarity=0.159 Sum_probs=36.1
Q ss_pred CcEEEEEeChh-HHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHH-hcCCeEEEEcC
Q 017410 239 SDITLVGWGAQ-LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV-RKTGRLLISHE 298 (372)
Q Consensus 239 ~di~ii~~G~~-~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~-~~~~~vivvEe 298 (372)
.++.|+..+.. ...+++.++.|+++|+.+.+ +... +.+ .+.+..+- ++...++++.+
T Consensus 319 ~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i-~~~~-~~~-~~~~~~a~~~gi~~~viig~ 377 (412)
T PRK00037 319 VDVYVVPLGEDAELAALKLAEKLRAAGIRVEL-DYGG-RKL-KKQFKYADKSGARFVLILGE 377 (412)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHCCCeEEE-eCCC-CCH-HHHHHHHHHcCCCEEEEECh
Confidence 47888887753 45688889999999999876 4332 334 33443332 23456666655
No 348
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=23.27 E-value=2e+02 Score=26.45 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=38.5
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHH
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEAS 286 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~ 286 (372)
+++.+.|..-...+-|+..|...|++|+|+-+.--++...+.....
T Consensus 53 ~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~ 98 (203)
T COG0062 53 LVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARAN 98 (203)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHH
Confidence 4466778889999999999999999999999988888877765554
No 349
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=23.25 E-value=1.2e+02 Score=32.10 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=33.4
Q ss_pred cEEEEeCCCCCCCCCCCCChhHH--------HHHcCCCCcEEEeeC---CHHHHHHHHH--HhHhCCCc
Q 017410 148 GLTVRAPYGAVGHGGHYHSQSPE--------AFFCHVPGLKVVIPR---SPRQAKGLLL--SCIRDPNP 203 (372)
Q Consensus 148 pvvi~~~~G~~g~~G~~Hs~~d~--------a~l~~iP~l~V~~Ps---d~~e~~~~l~--~a~~~~~P 203 (372)
|+++--.+| ..|.|||.+|+ +=+|+.+|+.++.-+ +|.++...+. |+-.++-|
T Consensus 178 pIilq~egG---raGGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P 243 (717)
T COG4981 178 PIILQWEGG---RAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFP 243 (717)
T ss_pred ceEEEEecC---ccCCccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcCCC
Confidence 777643333 34568997754 336889999888754 5666666664 66665444
No 350
>PRK05967 cystathionine beta-lyase; Provisional
Probab=23.22 E-value=3.4e+02 Score=27.40 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=15.2
Q ss_pred hcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcC
Q 017410 262 KEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (372)
Q Consensus 262 ~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe 298 (372)
..|+++..++.. +.+.+.+.+++..++|++|-
T Consensus 126 ~~Gi~v~~vd~~-----~~e~l~~al~~~TklV~les 157 (395)
T PRK05967 126 RLGVEVEYYDPE-----IGAGIAKLMRPNTKVVHTEA 157 (395)
T ss_pred hcCeEEEEeCCC-----CHHHHHHhcCcCceEEEEEC
Confidence 335555554321 23445555544445555554
No 351
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=23.09 E-value=96 Score=26.07 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 017410 44 SAINQALHIALETDPRAYVFGEDVGFGG 71 (372)
Q Consensus 44 ~a~~~~L~~l~~~d~~vv~i~aD~~~gg 71 (372)
..+++.|.+.+ +..+++++..|+|+|.
T Consensus 2 ~~la~~l~~~l-~~g~vi~L~GdLGaGK 28 (123)
T PF02367_consen 2 IRLAKKLAQIL-KPGDVILLSGDLGAGK 28 (123)
T ss_dssp HHHHHHHHHHH-SS-EEEEEEESTTSSH
T ss_pred HHHHHHHHHhC-CCCCEEEEECCCCCCH
Confidence 34666777666 4668999999999874
No 352
>PRK05568 flavodoxin; Provisional
Probab=22.71 E-value=2.1e+02 Score=23.73 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLI 276 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~ 276 (372)
++-..|...++.+++.|+++.++++....
T Consensus 14 nT~~~a~~i~~~~~~~g~~v~~~~~~~~~ 42 (142)
T PRK05568 14 NTEAMANLIAEGAKENGAEVKLLNVSEAS 42 (142)
T ss_pred hHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 33344444445566668999999877643
No 353
>PRK10537 voltage-gated potassium channel; Provisional
Probab=22.62 E-value=2.3e+02 Score=28.69 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=36.0
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecc-------------cCCCCHHHHHHH-HhcCCeEEEE
Q 017410 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT-------------LIPWDKETVEAS-VRKTGRLLIS 296 (372)
Q Consensus 238 g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~-------------i~P~d~~~l~~~-~~~~~~vivv 296 (372)
.++++|+++|..... .+++|+++|+++.||+... =.|-|++.|+++ +++.+.+++.
T Consensus 240 k~HvII~G~g~lg~~---v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAIN---TYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHH---HHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEc
Confidence 356889999887654 5566888899998887431 123455556543 4456666654
No 354
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=22.44 E-value=1.2e+02 Score=19.12 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCChHHHHHhhhh
Q 017410 347 KNKASCLESFKVPAQHCCMNLTA 369 (372)
Q Consensus 347 ~~~~~~i~~~~~~~~~~~~~~~~ 369 (372)
++.++.+.+.||+.+.+..+|-+
T Consensus 2 ~~~v~~L~~mGf~~~~a~~aL~~ 24 (37)
T smart00165 2 EEKIDQLLEMGFSREEALKALRA 24 (37)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 45677888888888888877754
No 355
>PRK00170 azoreductase; Reviewed
Probab=22.34 E-value=3.8e+02 Score=23.54 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhc--CCceeEEeecccC-C-CC------------------------HHHHHHHHhcCCeEEEEcCCCC
Q 017410 250 LSIMEQACLDAEKE--GISCELIDLKTLI-P-WD------------------------KETVEASVRKTGRLLISHEAPV 301 (372)
Q Consensus 250 ~~~a~~Aa~~L~~~--Gi~v~vi~~~~i~-P-~d------------------------~~~l~~~~~~~~~vivvEe~~~ 301 (372)
...+..+++.|+++ |.+++++|+.... | ++ .+.+.+.+...+.||++=-- .
T Consensus 19 ~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~sP~-y 97 (201)
T PRK00170 19 MQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAAPM-Y 97 (201)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEeecc-c
Confidence 34555667778887 8999999996543 3 22 12345556677776665333 2
Q ss_pred CCcHHHHHHHHHH
Q 017410 302 TGGFGAEISASIL 314 (372)
Q Consensus 302 ~GGlg~~i~~~l~ 314 (372)
.+++...+..++-
T Consensus 98 ~~~~pa~LK~~iD 110 (201)
T PRK00170 98 NFSIPTQLKAYID 110 (201)
T ss_pred ccCCcHHHHHHHH
Confidence 5777777766653
No 356
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=22.31 E-value=7.9e+02 Score=26.61 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=27.6
Q ss_pred hHH-HHHcCCCCcEEEee---CCHHHHHHHHHHhHhC-CCcEEEEeccc
Q 017410 168 SPE-AFFCHVPGLKVVIP---RSPRQAKGLLLSCIRD-PNPVVFFEPKW 211 (372)
Q Consensus 168 ~d~-a~l~~iP~l~V~~P---sd~~e~~~~l~~a~~~-~~Pv~ir~p~~ 211 (372)
+++ ..+++. ||.++.- .|..++.++++.+-+. ++|++|.....
T Consensus 195 ~~~~~~~~a~-Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~~T~ 242 (653)
T TIGR00232 195 EDVAKRFEAY-GWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEVTTT 242 (653)
T ss_pred ccHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEEee
Confidence 344 466665 8888765 3555666666666555 48999976553
No 357
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.29 E-value=3.4e+02 Score=22.44 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=50.9
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcC-CceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHH---HHHHH
Q 017410 237 EGSDITLVGWGAQLSIMEQACLDAEKEG-ISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGA---EISAS 312 (372)
Q Consensus 237 ~g~di~ii~~G~~~~~a~~Aa~~L~~~G-i~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~---~i~~~ 312 (372)
+-+.+.+++.|.....|.+++-.|.+.+ +.+..+....+.--+.+ .+.+...+|++..+ |.-.+ .+...
T Consensus 12 ~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~----~~~~~~~vi~is~~---g~t~~~~~~~~~~ 84 (153)
T cd05009 12 EAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIA----LVDEGTPVIFLAPE---DRLEEKLESLIKE 84 (153)
T ss_pred ccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhh----hccCCCcEEEEecC---ChhHHHHHHHHHH
Confidence 4467899999999999999988887764 67777665554433333 23444556666532 32222 34444
Q ss_pred HHHhccccCCCcEEEEeccC
Q 017410 313 ILERCFLRLEAPVARVCGLD 332 (372)
Q Consensus 313 l~~~~~~~l~~~v~~ig~~~ 332 (372)
+.+. ..++..+...+
T Consensus 85 ~~~~-----~~~vi~it~~~ 99 (153)
T cd05009 85 VKAR-----GAKVIVITDDG 99 (153)
T ss_pred HHHc-----CCEEEEEecCC
Confidence 4443 34566665544
No 358
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=22.11 E-value=1.6e+02 Score=26.27 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=25.4
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCcee
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCE 268 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~ 268 (372)
.+.|++|......|.|.+.+|+++|..+.
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~ 95 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVS 95 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SES
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccC
Confidence 68899999999999999999999999764
No 359
>PTZ00062 glutaredoxin; Provisional
Probab=22.01 E-value=2.1e+02 Score=26.19 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=47.1
Q ss_pred CCcEEEEEeCh----hHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhc-----CCeEEEEcCCCCCCcHHHH
Q 017410 238 GSDITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-----TGRLLISHEAPVTGGFGAE 308 (372)
Q Consensus 238 g~di~ii~~G~----~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~-----~~~vivvEe~~~~GGlg~~ 308 (372)
.++++|++-|+ ....+.++.+.|++.|++...+|+.. |. .+.+.+++ +=..|++.... .||+...
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~----d~-~~~~~l~~~sg~~TvPqVfI~G~~-IGG~d~l 185 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE----DP-DLREELKVYSNWPTYPQLYVNGEL-IGGHDII 185 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC----CH-HHHHHHHHHhCCCCCCeEEECCEE-EcChHHH
Confidence 46688887773 56788899999999999999999763 32 23333332 22456676553 6988554
Q ss_pred HHHHHHHhc
Q 017410 309 ISASILERC 317 (372)
Q Consensus 309 i~~~l~~~~ 317 (372)
.. +.+.|
T Consensus 186 ~~--l~~~G 192 (204)
T PTZ00062 186 KE--LYESN 192 (204)
T ss_pred HH--HHHcC
Confidence 42 44444
No 360
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=22.01 E-value=2.8e+02 Score=27.49 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=20.7
Q ss_pred CCHHHHHHHHhcCCeEEEEcCCCCCCcH
Q 017410 278 WDKETVEASVRKTGRLLISHEAPVTGGF 305 (372)
Q Consensus 278 ~d~~~l~~~~~~~~~vivvEe~~~~GGl 305 (372)
.|.+.|.+.+++++-++++|+....|.+
T Consensus 159 ~~~~~I~~l~~~~g~~livD~a~a~g~~ 186 (402)
T TIGR02006 159 QDIAAIGEICRERKVFFHVDAAQSVGKI 186 (402)
T ss_pred ccHHHHHHHHHHcCCEEEEEcchhcCCc
Confidence 5678888888888777778887655544
No 361
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=21.71 E-value=1.5e+02 Score=26.03 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=27.9
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCcee
Q 017410 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCE 268 (372)
Q Consensus 237 ~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~ 268 (372)
.+.+++++++|-.....+..++.|+++|.+|.
T Consensus 56 ~~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~ 87 (155)
T PF12500_consen 56 PGERVLVLGTGEFMYLPLLLAEELEQAGADVR 87 (155)
T ss_pred CCCcEEEEccchHHHHHHHHHHHHHhcCCceE
Confidence 56889999999999999999999999985544
No 362
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=21.69 E-value=3.7e+02 Score=24.21 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=38.1
Q ss_pred EEEEEeChhH--HHHHHHHHHHHhcCCceeEEeecccCCCCH--HHHHHHHhc--CCeEEEEcCC
Q 017410 241 ITLVGWGAQL--SIMEQACLDAEKEGISCELIDLKTLIPWDK--ETVEASVRK--TGRLLISHEA 299 (372)
Q Consensus 241 i~ii~~G~~~--~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~--~~l~~~~~~--~~~vivvEe~ 299 (372)
+++++++..- ....++++.|+++||.+.+|.+-...+=.+ +.+.+.+.+ ..+++++-.+
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 5566666333 346688999999999999999988743221 234444432 2566777655
No 363
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=21.60 E-value=1.1e+02 Score=24.32 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=21.8
Q ss_pred eeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEE
Q 017410 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (372)
Q Consensus 236 ~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi 270 (372)
.++.+++++|.+..-..+..++..|+..|+++.++
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l 96 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEM 96 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEe
Confidence 34566777776543234556777888888865433
No 364
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=21.59 E-value=2.8e+02 Score=26.79 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=18.9
Q ss_pred CCHHHHHHHHhcCCeEEEEcCCCCCCc
Q 017410 278 WDKETVEASVRKTGRLLISHEAPVTGG 304 (372)
Q Consensus 278 ~d~~~l~~~~~~~~~vivvEe~~~~GG 304 (372)
+|.+.|.+.+++++-.+++|+....|.
T Consensus 155 ~~~~~I~~l~~~~~~~~ivD~a~~~g~ 181 (353)
T TIGR03235 155 QPIREIAEVLEAHEAFFHVDAAQVVGK 181 (353)
T ss_pred cCHHHHHHHHHHcCCEEEEEchhhcCC
Confidence 466778888887777777777654443
No 365
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=21.55 E-value=5e+02 Score=25.10 Aligned_cols=34 Identities=12% Similarity=0.002 Sum_probs=23.7
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhc--CCceeEEe
Q 017410 238 GSDITLVGWGAQLSIMEQACLDAEKE--GISCELID 271 (372)
Q Consensus 238 g~di~ii~~G~~~~~a~~Aa~~L~~~--Gi~v~vi~ 271 (372)
..++++|+.|+.+...+.-++.+.++ ..++.++.
T Consensus 111 ~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y 146 (332)
T PRK10684 111 EDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIF 146 (332)
T ss_pred CCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEE
Confidence 35799999999887777766766544 34565554
No 366
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=21.51 E-value=3.5e+02 Score=23.45 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=38.4
Q ss_pred HHHHHHHHHHH-hcCCceeEEeecccCC-C---------C--HHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 251 SIMEQACLDAE-KEGISCELIDLKTLIP-W---------D--KETVEASVRKTGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 251 ~~a~~Aa~~L~-~~Gi~v~vi~~~~i~P-~---------d--~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
..+..+++.+. +.|.+++++|+.-+.| + + .+.+.+.+...+.+|+.---| .|++...+..++-
T Consensus 17 ~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~s~~~~LKn~lD 92 (174)
T TIGR03566 17 ALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY-RGSYTGLFKHLFD 92 (174)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC-cCcCcHHHHHHHH
Confidence 34444555555 4488999998866521 1 2 234667777787776654333 5777777766653
No 367
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.40 E-value=7.9e+02 Score=24.20 Aligned_cols=119 Identities=11% Similarity=0.089 Sum_probs=70.6
Q ss_pred hHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCC-CcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEe
Q 017410 168 SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDP-NPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGW 246 (372)
Q Consensus 168 ~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~-~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~ 246 (372)
+.+.++..-.+|.++.-+...++..-+-..+..+ +++.+ ..+++....+++.. . + .|+|+.||.+
T Consensus 11 ~~~~~~~~~~~~~i~~g~~~~~la~~ia~~lg~~l~~~~~-----------~~FpDGE~~v~i~~-~-v-rg~~V~ivqs 76 (330)
T PRK02812 11 EQLPLLSDNNRLRLFSGSSNPALAQEVARYLGMDLGPMIR-----------KRFADGELYVQIQE-S-I-RGCDVYLIQP 76 (330)
T ss_pred CCCccccCCCCEEEEECCCCHHHHHHHHHHhCCCceeeEE-----------EECCCCCEEEEeCC-C-C-CCCEEEEECC
Confidence 3456666677888888777777777777666432 11111 11222211111110 0 1 4678999988
Q ss_pred Ch-----hHHHHHHHHHHHHhcCC-ceeEEeeccc-----------CCCCHHHHHHHHhc--CCeEEEEcCCC
Q 017410 247 GA-----QLSIMEQACLDAEKEGI-SCELIDLKTL-----------IPWDKETVEASVRK--TGRLLISHEAP 300 (372)
Q Consensus 247 G~-----~~~~a~~Aa~~L~~~Gi-~v~vi~~~~i-----------~P~d~~~l~~~~~~--~~~vivvEe~~ 300 (372)
.+ ..-+.+-.++.|++.|- +++++=+.+- -|+..+.+.+.+.. .++|+++|-|.
T Consensus 77 ~~~p~nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~ 149 (330)
T PRK02812 77 TCAPVNDHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADRVLAMDLHS 149 (330)
T ss_pred CCCCccHHHHHHHHHHHHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCc
Confidence 53 34556667788887775 4666643221 16666777777654 67999999986
No 368
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=21.31 E-value=1.3e+02 Score=19.06 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCChHHHHHhhhh
Q 017410 347 KNKASCLESFKVPAQHCCMNLTA 369 (372)
Q Consensus 347 ~~~~~~i~~~~~~~~~~~~~~~~ 369 (372)
++.++++.+.|++.+.+..+|.+
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~ 24 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRA 24 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 45678888888888888877754
No 369
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=20.73 E-value=4.1e+02 Score=22.47 Aligned_cols=55 Identities=18% Similarity=0.080 Sum_probs=27.2
Q ss_pred eCCcEEEEEe--ChhHHHHHHHHHHHHhcCC-cee--EEeecccCCCCHHHHHHHHhcCC
Q 017410 237 EGSDITLVGW--GAQLSIMEQACLDAEKEGI-SCE--LIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 237 ~g~di~ii~~--G~~~~~a~~Aa~~L~~~Gi-~v~--vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
++.|++.+++ ++....+.+..+.|+++|. ++. +--...+.+-+.+...+.+++.+
T Consensus 53 ~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G 112 (137)
T PRK02261 53 TDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMG 112 (137)
T ss_pred cCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcC
Confidence 3445555554 4455566666666766644 222 22222234445555545555543
No 370
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=20.72 E-value=6.6e+02 Score=26.23 Aligned_cols=27 Identities=7% Similarity=-0.026 Sum_probs=24.7
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 180 KVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 180 ~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.-+.-.+..|+...++.+++.++|++|
T Consensus 496 ~~~~v~~~~el~~al~~a~~~~~p~li 522 (539)
T TIGR03393 496 ECWRVSEAEQLADVLEKVAAHERLSLI 522 (539)
T ss_pred ceEEeccHHHHHHHHHHHhccCCeEEE
Confidence 467779999999999999999999999
No 371
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=20.50 E-value=2e+02 Score=26.76 Aligned_cols=99 Identities=16% Similarity=0.335 Sum_probs=58.2
Q ss_pred HHHHcCCCCcEEEee-CCHHHHHHHHHHhHhCCCcEEEEecccccccccccCCCCC-ccccCCceEEeeeCCcEEEEEeC
Q 017410 170 EAFFCHVPGLKVVIP-RSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDD-YMLPLSEAEVIREGSDITLVGWG 247 (372)
Q Consensus 170 ~a~l~~iP~l~V~~P-sd~~e~~~~l~~a~~~~~Pv~ir~p~~l~r~~~~~v~~~~-~~~~~Gk~~v~~~g~di~ii~~G 247 (372)
..+++.+|++.++-- ++-+|++.+++.. .|=.|+.+--| |+++ -.+ +..++-.+...|+.+|+.-
T Consensus 17 ~~yv~~~~gF~~vg~A~~~~ea~~~i~~~----~pDLILLDiYm--------Pd~~Gi~l-L~~ir~~~~~~DVI~iTAA 83 (224)
T COG4565 17 RRYVKQIPGFSVVGTAGTLEEAKMIIEEF----KPDLILLDIYM--------PDGNGIEL-LPELRSQHYPVDVIVITAA 83 (224)
T ss_pred HHHHHhCCCceEEEeeccHHHHHHHHHhh----CCCEEEEeecc--------CCCccHHH-HHHHHhcCCCCCEEEEecc
Confidence 368899999877755 4556666555522 22333332211 1111 000 1111112235689999987
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (372)
+-...+.+|. ..+++|. .||||..+-+.+++.++
T Consensus 84 ~d~~tI~~al--------r~Gv~DY-LiKPf~~eRl~~aL~~y 117 (224)
T COG4565 84 SDMETIKEAL--------RYGVVDY-LIKPFTFERLQQALTRY 117 (224)
T ss_pred chHHHHHHHH--------hcCchhh-eecceeHHHHHHHHHHH
Confidence 7777776654 3678884 57999999888887765
No 372
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.50 E-value=1.3e+02 Score=31.51 Aligned_cols=36 Identities=33% Similarity=0.400 Sum_probs=29.6
Q ss_pred HHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 017410 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFE 208 (372)
Q Consensus 172 ~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~ir~ 208 (372)
..+..|. .|+.|.+.+|+..++++|-+++-|++.|-
T Consensus 51 ~~~~~p~-~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG 86 (499)
T PRK11230 51 AYRTRPL-LVVLPKQMEQVQALLAVCHRLRVPVVARG 86 (499)
T ss_pred ccCCCCC-EEEeeCCHHHHHHHHHHHHHcCCeEEEEC
Confidence 3455664 58899999999999999999888888753
No 373
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=20.34 E-value=5.7e+02 Score=26.92 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=58.8
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEeccccc--HHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F--~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~ 158 (372)
|.+|+..+- +=...+..|.|++++. -++++.+ .++. ++-.-| +. .+... ++ |++++ .-.|.+
T Consensus 408 ~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i-~GDG~f~m~~~e-L~-Ta~~~--------~l-~i~~vV~NN~~y 475 (566)
T PRK07282 408 ERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILF-VGDGGFQMTNQE-LA-ILNIY--------KV-PIKVVMLNNHSL 475 (566)
T ss_pred CCcEecCCccccccchhhHhheeheecCCCcEEEE-EcchhhhccHHH-HH-HHHHh--------CC-CeEEEEEeCCCc
Confidence 778887542 2334566777777763 3555554 4554 333322 22 23322 34 55554 223322
Q ss_pred C---------CCCC--CC---ChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 159 G---------HGGH--YH---SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 159 g---------~~G~--~H---s~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
+ .++. .. ..-|. .+.+.+ |..-..-.++.|+..+++ ++..++|++|
T Consensus 476 ~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~-~~~~~~p~lI 536 (566)
T PRK07282 476 GMVRQWQESFYEGRTSESVFDTLPDFQLMAQAY-GIKHYKFDNPETLAQDLE-VITEDVPMLI 536 (566)
T ss_pred hHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHH-HhcCCCCEEE
Confidence 1 1111 11 01133 344554 777788899999999997 4677899999
No 374
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.26 E-value=1.3e+02 Score=29.21 Aligned_cols=28 Identities=18% Similarity=0.263 Sum_probs=25.9
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 017410 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (372)
Q Consensus 180 ~V~~Psd~~e~~~~l~~a~~~~~Pv~ir 207 (372)
.++.|.|.+|+..++++|-+++-|++++
T Consensus 39 ~vv~p~~~edv~~~l~~a~~~~ip~~v~ 66 (305)
T PRK12436 39 VFVAPTNYDEIQEVIKYANKYNIPVTFL 66 (305)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4899999999999999999999999984
No 375
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.25 E-value=4.4e+02 Score=25.37 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=25.9
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 017410 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFE 208 (372)
Q Consensus 180 ~V~~Psd~~e~~~~l~~a~~~~~Pv~ir~ 208 (372)
.++.|.+.+|+..+++++-+++.|+.++-
T Consensus 33 ~vv~P~s~edv~~~v~~a~~~~~p~~v~G 61 (298)
T PRK13905 33 YLVEPADIEDLQEFLKLLKENNIPVTVLG 61 (298)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 47889999999999999999999999843
No 376
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=20.14 E-value=5e+02 Score=25.14 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=15.6
Q ss_pred CCHHHHHHHHhcCCeEEEEcCCCCCC
Q 017410 278 WDKETVEASVRKTGRLLISHEAPVTG 303 (372)
Q Consensus 278 ~d~~~l~~~~~~~~~vivvEe~~~~G 303 (372)
+|.+.|.+.+++++.++++|.-...|
T Consensus 148 ~~~~~i~~l~~~~~~~livDa~~~~g 173 (368)
T PRK13479 148 NPLDEIAAVAKRHGKRLIVDAMSSFG 173 (368)
T ss_pred cCHHHHHHHHHHcCCEEEEEcccccC
Confidence 56677777777666666666433333
No 377
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=20.02 E-value=4e+02 Score=23.87 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=22.5
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCC--ceeEE
Q 017410 238 GSDITLVGWGAQLSIMEQACLDAEKEGI--SCELI 270 (372)
Q Consensus 238 g~di~ii~~G~~~~~a~~Aa~~L~~~Gi--~v~vi 270 (372)
+..+++|+.|......+..++.+.+.+- ++.++
T Consensus 103 ~~~~vlIagG~Giap~~~~l~~~~~~~~~~~v~l~ 137 (231)
T cd06215 103 ADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFI 137 (231)
T ss_pred CCcEEEEecCcCcchHHHHHHHHHhcCCCCcEEEE
Confidence 4678999999887777766666655442 45444
Done!