Query 017410
Match_columns 372
No_of_seqs 164 out of 1556
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 13:58:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w85_B Pyruvate dehydrogenase 100.0 7.4E-67 2.5E-71 509.0 30.7 316 39-355 2-320 (324)
2 1umd_B E1-beta, 2-OXO acid deh 100.0 2.3E-66 8E-71 505.4 30.5 317 38-355 2-320 (324)
3 2bfd_B 2-oxoisovalerate dehydr 100.0 1.6E-65 5.5E-70 502.9 29.0 320 36-355 17-338 (342)
4 1ik6_A Pyruvate dehydrogenase; 100.0 5.7E-65 2E-69 503.3 27.7 313 38-355 49-365 (369)
5 2ozl_B PDHE1-B, pyruvate dehyd 100.0 1.6E-64 5.5E-69 495.5 30.5 318 37-355 12-337 (341)
6 1qs0_B 2-oxoisovalerate dehydr 100.0 3E-64 1E-68 493.2 29.0 315 38-356 3-335 (338)
7 3mos_A Transketolase, TK; thia 100.0 3.6E-55 1.2E-59 458.8 28.3 296 36-354 309-615 (616)
8 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 4.4E-54 1.5E-58 451.9 30.0 293 38-355 317-617 (621)
9 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 4.4E-54 1.5E-58 452.4 28.3 294 39-357 321-622 (629)
10 3l84_A Transketolase; TKT, str 100.0 8E-49 2.7E-53 410.8 21.9 282 37-355 335-631 (632)
11 3m49_A Transketolase; alpha-be 100.0 4.8E-49 1.7E-53 415.7 19.6 293 35-356 374-689 (690)
12 3uk1_A Transketolase; structur 100.0 1E-48 3.4E-53 414.2 21.4 290 36-355 391-708 (711)
13 3rim_A Transketolase, TK; TPP, 100.0 2.3E-48 8E-53 410.4 20.1 290 37-355 372-696 (700)
14 3kom_A Transketolase; rossmann 100.0 9.7E-48 3.3E-52 404.8 22.2 292 36-356 351-662 (663)
15 1gpu_A Transketolase; transfer 100.0 8.3E-48 2.8E-52 407.4 17.9 292 36-356 352-663 (680)
16 2r8o_A Transketolase 1, TK 1; 100.0 7.6E-48 2.6E-52 407.2 16.9 291 36-356 351-662 (669)
17 1itz_A Transketolase; calvin c 100.0 8.5E-47 2.9E-51 399.4 24.9 290 35-355 361-674 (675)
18 2e6k_A Transketolase; structur 100.0 9.8E-47 3.4E-51 397.6 19.9 286 37-356 346-650 (651)
19 2jgd_A 2-oxoglutarate dehydrog 100.0 2E-46 6.7E-51 405.3 22.2 291 35-337 586-911 (933)
20 1r9j_A Transketolase; domains, 100.0 2.2E-46 7.4E-51 396.0 19.7 284 37-355 349-653 (673)
21 2yic_A 2-oxoglutarate decarbox 100.0 3.5E-46 1.2E-50 401.2 17.7 318 8-337 484-848 (868)
22 2xt6_A 2-oxoglutarate decarbox 100.0 1.1E-45 3.7E-50 406.2 18.5 322 5-337 726-1093(1113)
23 2qtc_A Pyruvate dehydrogenase 100.0 2.5E-40 8.6E-45 356.5 22.0 296 36-355 488-854 (886)
24 3ahc_A Phosphoketolase, xylulo 100.0 3.1E-37 1.1E-41 327.7 17.3 302 39-355 428-783 (845)
25 1yd7_A 2-keto acid:ferredoxin 99.9 1.4E-27 4.9E-32 237.9 9.7 255 40-315 23-366 (395)
26 2c42_A Pyruvate-ferredoxin oxi 99.8 2.3E-19 7.8E-24 199.8 23.0 221 83-315 51-349 (1231)
27 3ju3_A Probable 2-oxoacid ferr 99.7 9.4E-17 3.2E-21 133.6 9.5 103 237-355 12-114 (118)
28 2nxw_A Phenyl-3-pyruvate decar 96.0 0.085 2.9E-06 54.1 14.2 168 29-215 9-190 (565)
29 1v5e_A Pyruvate oxidase; oxido 95.1 0.067 2.3E-06 55.2 9.6 111 91-214 48-167 (590)
30 2uz1_A Benzaldehyde lyase; thi 95.0 0.28 9.6E-06 50.1 13.8 153 39-211 3-164 (563)
31 1ozh_A ALS, acetolactate synth 94.5 0.29 9.9E-06 50.1 12.5 154 40-213 11-172 (566)
32 2wvg_A PDC, pyruvate decarboxy 94.5 0.77 2.6E-05 46.9 15.7 154 40-213 3-171 (568)
33 2iht_A Carboxyethylarginine sy 94.3 0.2 7E-06 51.3 10.6 153 40-213 12-173 (573)
34 2pan_A Glyoxylate carboligase; 93.7 0.7 2.4E-05 47.7 13.6 154 40-212 27-189 (616)
35 2vbi_A Pyruvate decarboxylase; 93.7 1.1 3.7E-05 45.7 14.7 154 40-213 3-171 (566)
36 1ybh_A Acetolactate synthase, 93.6 0.26 8.8E-06 50.7 10.0 152 40-212 12-173 (590)
37 2c31_A Oxalyl-COA decarboxylas 93.6 0.38 1.3E-05 49.1 11.3 156 38-213 8-173 (568)
38 1q6z_A BFD, BFDC, benzoylforma 93.5 0.22 7.5E-06 50.4 9.1 115 87-213 40-163 (528)
39 3eya_A Pyruvate dehydrogenase 93.4 0.35 1.2E-05 49.3 10.4 115 87-213 43-164 (549)
40 4feg_A Pyruvate oxidase; carba 93.3 0.56 1.9E-05 48.3 11.9 157 38-213 9-173 (603)
41 2q28_A Oxalyl-COA decarboxylas 92.8 0.63 2.2E-05 47.4 11.4 154 40-213 8-171 (564)
42 2pgn_A Cyclohexane-1,2-dione h 92.8 0.36 1.2E-05 49.6 9.6 114 87-213 45-167 (589)
43 1t9b_A Acetolactate synthase, 92.7 0.45 1.5E-05 49.9 10.3 113 87-212 122-243 (677)
44 3hww_A 2-succinyl-5-enolpyruvy 92.3 2.1 7.3E-05 43.5 14.5 150 45-211 9-171 (556)
45 2x7j_A 2-succinyl-5-enolpyruvy 90.2 3.6 0.00012 42.2 13.8 114 87-212 71-199 (604)
46 3lq1_A 2-succinyl-5-enolpyruvy 89.9 2.8 9.5E-05 42.8 12.6 113 87-211 51-178 (578)
47 2vk8_A Pyruvate decarboxylase 89.6 1.5 5.2E-05 44.5 10.3 114 87-213 44-172 (563)
48 1ovm_A Indole-3-pyruvate decar 88.9 2.7 9.1E-05 42.5 11.5 156 40-213 5-172 (552)
49 2vbf_A Branched-chain alpha-ke 88.4 1.1 3.7E-05 45.7 8.3 152 40-212 25-191 (570)
50 1t9b_A Acetolactate synthase, 84.0 2 6.8E-05 45.0 7.6 149 44-206 464-631 (677)
51 2lqo_A Putative glutaredoxin R 74.7 6.5 0.00022 30.0 6.0 74 239-317 4-83 (92)
52 3ipz_A Monothiol glutaredoxin- 69.0 5.1 0.00017 31.3 4.2 70 238-309 17-91 (109)
53 3rpe_A MDAB, modulator of drug 64.5 28 0.00094 30.9 8.7 60 251-313 47-106 (218)
54 3fni_A Putative diflavin flavo 64.3 14 0.00049 30.7 6.5 57 247-306 16-72 (159)
55 1aba_A Glutaredoxin; electron 63.1 13 0.00045 27.1 5.4 60 249-308 13-82 (87)
56 3zyw_A Glutaredoxin-3; metal b 61.7 8.4 0.00029 30.2 4.2 69 238-308 15-88 (111)
57 4feg_A Pyruvate oxidase; carba 61.4 12 0.00041 38.3 6.4 110 85-206 410-540 (603)
58 3eya_A Pyruvate dehydrogenase 61.2 19 0.00066 36.2 7.8 29 178-206 495-523 (549)
59 2q62_A ARSH; alpha/beta, flavo 59.9 23 0.00079 31.9 7.4 63 250-314 51-122 (247)
60 2wci_A Glutaredoxin-4; redox-a 59.8 8.9 0.00031 31.4 4.2 67 239-307 35-106 (135)
61 2vzf_A NADH-dependent FMN redu 59.3 17 0.00059 31.0 6.2 67 247-314 16-93 (197)
62 3hly_A Flavodoxin-like domain; 58.4 22 0.00074 29.5 6.5 56 247-306 12-67 (161)
63 4dik_A Flavoprotein; TM0755, e 56.6 31 0.0011 33.5 8.2 73 241-314 267-343 (410)
64 1wik_A Thioredoxin-like protei 56.5 7.4 0.00025 30.1 3.0 68 238-307 14-86 (109)
65 2a5l_A Trp repressor binding p 55.6 22 0.00074 30.0 6.2 68 246-315 16-96 (200)
66 1sqs_A Conserved hypothetical 55.3 29 0.00098 30.7 7.2 68 247-315 15-104 (242)
67 2o1x_A 1-deoxy-D-xylulose-5-ph 54.0 42 0.0014 34.5 9.1 28 183-210 260-287 (629)
68 3m49_A Transketolase; alpha-be 53.1 43 0.0015 35.0 9.0 39 171-210 229-271 (690)
69 5nul_A Flavodoxin; electron tr 52.7 22 0.00076 28.2 5.5 45 246-297 9-53 (138)
70 3l78_A Regulatory protein SPX; 51.5 29 0.00098 27.5 5.9 42 247-289 7-48 (120)
71 3fz4_A Putative arsenate reduc 51.5 27 0.00091 27.8 5.7 43 248-291 11-53 (120)
72 3l4e_A Uncharacterized peptida 51.2 36 0.0012 29.8 7.0 54 238-294 27-84 (206)
73 3lfh_A Manxa, phosphotransfera 50.3 84 0.0029 25.7 8.8 108 240-355 5-120 (144)
74 1w85_A Pyruvate dehydrogenase 48.4 42 0.0015 32.1 7.6 33 175-208 227-263 (368)
75 2amj_A Modulator of drug activ 48.0 43 0.0015 28.9 6.9 60 252-314 35-94 (204)
76 3f6r_A Flavodoxin; FMN binding 47.7 85 0.0029 24.9 8.4 62 247-315 13-77 (148)
77 2g3q_A Protein YBL047C; endocy 47.4 10 0.00036 24.4 2.1 26 346-371 4-29 (43)
78 2c31_A Oxalyl-COA decarboxylas 47.3 44 0.0015 33.6 7.9 109 85-206 416-541 (568)
79 3gkx_A Putative ARSC family re 46.2 24 0.00083 28.0 4.6 48 241-290 6-53 (120)
80 4bby_A Alkyldihydroxyacetoneph 46.1 16 0.00056 37.9 4.4 35 172-207 201-235 (658)
81 2fzv_A Putative arsenical resi 45.6 36 0.0012 31.4 6.3 64 250-314 75-147 (279)
82 3lyu_A Putative hydrogenase; t 44.9 29 0.00099 28.2 5.0 49 237-285 17-66 (142)
83 1t0i_A YLR011WP; FMN binding p 44.7 44 0.0015 28.0 6.4 68 247-315 14-109 (191)
84 1ozh_A ALS, acetolactate synth 44.7 26 0.0009 35.3 5.7 110 85-206 410-537 (566)
85 1rw1_A Conserved hypothetical 44.6 22 0.00074 27.9 4.0 49 241-291 2-50 (114)
86 2wem_A Glutaredoxin-related pr 44.0 25 0.00087 27.8 4.4 66 238-308 19-93 (118)
87 3u7r_A NADPH-dependent FMN red 43.8 48 0.0016 28.5 6.5 65 248-313 16-90 (190)
88 3rdw_A Putative arsenate reduc 43.8 28 0.00097 27.7 4.7 49 241-291 7-55 (121)
89 3jx9_A Putative phosphoheptose 43.5 43 0.0015 28.5 6.0 125 187-314 24-155 (170)
90 1pdo_A Mannose permease; phosp 43.5 1.2E+02 0.004 24.3 8.5 109 240-355 3-119 (135)
91 3uk1_A Transketolase; structur 43.4 50 0.0017 34.7 7.6 39 171-210 244-285 (711)
92 1v5e_A Pyruvate oxidase; oxido 43.3 42 0.0014 34.1 7.0 35 171-206 496-533 (590)
93 2uz1_A Benzaldehyde lyase; thi 42.8 73 0.0025 31.9 8.7 35 171-206 506-540 (563)
94 2fz5_A Flavodoxin; alpha/beta 42.5 43 0.0015 26.1 5.6 61 247-315 11-73 (137)
95 3f2v_A General stress protein 42.5 50 0.0017 28.5 6.4 62 253-315 19-83 (192)
96 1q6z_A BFD, BFDC, benzoylforma 42.5 17 0.00059 36.3 3.9 35 171-206 485-519 (528)
97 2bfd_A 2-oxoisovalerate dehydr 42.4 50 0.0017 32.0 7.1 26 183-208 254-283 (400)
98 3hr4_A Nitric oxide synthase, 41.8 77 0.0026 28.0 7.7 107 239-357 40-153 (219)
99 3gx8_A Monothiol glutaredoxin- 41.8 24 0.00081 28.0 3.9 66 238-308 15-91 (121)
100 1z3e_A Regulatory protein SPX; 41.5 61 0.0021 25.9 6.4 48 241-290 3-50 (132)
101 2kok_A Arsenate reductase; bru 40.4 32 0.0011 27.1 4.5 49 241-291 7-55 (120)
102 1t1v_A SH3BGRL3, SH3 domain-bi 39.3 40 0.0014 24.9 4.7 67 240-309 3-78 (93)
103 2pan_A Glyoxylate carboligase; 39.2 31 0.0011 35.2 5.2 110 85-206 432-574 (616)
104 1itz_A Transketolase; calvin c 38.3 1.1E+02 0.0037 31.8 9.2 39 171-210 216-259 (675)
105 2zki_A 199AA long hypothetical 38.1 75 0.0026 26.6 6.9 68 246-315 14-95 (199)
106 3hww_A 2-succinyl-5-enolpyruvy 38.0 29 0.00098 35.0 4.7 29 178-206 505-533 (556)
107 1ydg_A Trp repressor binding p 37.4 31 0.001 29.6 4.2 75 240-315 8-103 (211)
108 3kom_A Transketolase; rossmann 37.2 92 0.0032 32.3 8.5 39 171-210 205-247 (663)
109 1ybh_A Acetolactate synthase, 37.0 39 0.0013 34.3 5.5 110 85-206 416-552 (590)
110 2o1s_A 1-deoxy-D-xylulose-5-ph 36.8 1.1E+02 0.0039 31.1 9.1 27 182-208 254-280 (621)
111 3l84_A Transketolase; TKT, str 36.7 1.1E+02 0.0038 31.5 8.9 38 171-210 200-240 (632)
112 2x7j_A 2-succinyl-5-enolpyruvy 36.2 26 0.00088 35.7 4.0 29 178-206 546-574 (604)
113 3kkj_A Amine oxidase, flavin-c 35.1 32 0.0011 28.8 3.9 31 239-272 3-33 (336)
114 3f0i_A Arsenate reductase; str 34.9 25 0.00085 27.9 2.9 43 248-291 12-54 (119)
115 3nzn_A Glutaredoxin; structura 34.6 37 0.0013 25.5 3.8 68 239-307 22-94 (103)
116 2e85_A Hydrogenase 3 maturatio 34.2 1E+02 0.0035 25.6 6.9 57 240-298 5-66 (159)
117 1qs0_A 2-oxoisovalerate dehydr 34.0 92 0.0032 30.2 7.5 33 175-208 267-303 (407)
118 2ohh_A Type A flavoprotein FPR 33.9 74 0.0025 29.9 6.7 62 248-313 269-330 (404)
119 1rtt_A Conserved hypothetical 33.8 29 0.00098 29.4 3.4 61 253-315 26-97 (193)
120 1id1_A Putative potassium chan 33.1 1.3E+02 0.0044 24.0 7.3 33 238-273 3-35 (153)
121 3b6i_A Flavoprotein WRBA; flav 32.8 80 0.0027 26.3 6.1 64 247-313 13-91 (198)
122 1ycg_A Nitric oxide reductase; 32.6 70 0.0024 30.0 6.3 69 241-313 253-325 (398)
123 2yan_A Glutaredoxin-3; oxidore 32.4 41 0.0014 25.4 3.8 69 239-309 17-90 (105)
124 2q28_A Oxalyl-COA decarboxylas 32.4 91 0.0031 31.2 7.4 110 85-206 411-538 (564)
125 2crn_A Ubash3A protein; compac 32.3 20 0.00068 25.5 1.7 26 346-371 9-34 (64)
126 2ab1_A Hypothetical protein; H 32.2 14 0.00048 29.8 1.0 38 235-272 58-97 (122)
127 3ic4_A Glutaredoxin (GRX-1); s 31.6 59 0.002 23.4 4.5 66 240-307 13-83 (92)
128 1f4p_A Flavodoxin; electron tr 31.4 70 0.0024 25.3 5.3 44 247-297 12-56 (147)
129 1z96_A DNA-damage, UBA-domain 31.3 47 0.0016 20.5 3.3 25 347-371 5-29 (40)
130 1cfz_A Hydrogenase 2 maturatio 31.3 62 0.0021 27.0 5.0 56 240-299 2-64 (162)
131 1e5d_A Rubredoxin\:oxygen oxid 31.2 1.4E+02 0.0047 27.9 8.1 70 242-315 255-328 (402)
132 1t5b_A Acyl carrier protein ph 31.1 1.5E+02 0.005 24.6 7.6 67 248-315 17-111 (201)
133 1r9j_A Transketolase; domains, 30.9 1.5E+02 0.0051 30.7 8.8 39 171-210 205-248 (673)
134 2ark_A Flavodoxin; FMN, struct 30.8 82 0.0028 26.3 5.8 60 247-314 16-76 (188)
135 2q9u_A A-type flavoprotein; fl 30.8 1.3E+02 0.0045 28.3 8.0 65 247-315 268-332 (414)
136 3lq1_A 2-succinyl-5-enolpyruvy 30.4 80 0.0027 31.8 6.6 29 178-206 526-554 (578)
137 1s3c_A Arsenate reductase; ARS 30.2 59 0.002 26.6 4.6 42 248-290 10-51 (141)
138 2ct6_A SH3 domain-binding glut 30.1 80 0.0027 24.2 5.2 63 240-308 9-89 (111)
139 2ekk_A UBA domain from E3 ubiq 30.1 30 0.001 22.7 2.2 26 346-371 9-34 (47)
140 3lrx_A Putative hydrogenase; a 30.0 62 0.0021 26.6 4.8 49 237-285 22-71 (158)
141 3llv_A Exopolyphosphatase-rela 29.7 1.5E+02 0.0051 23.1 7.0 32 238-272 6-37 (141)
142 3q2o_A Phosphoribosylaminoimid 29.7 1.5E+02 0.0052 27.8 8.2 74 236-317 12-98 (389)
143 1ify_A HHR23A, UV excision rep 29.2 49 0.0017 21.9 3.2 25 347-371 9-33 (49)
144 3qmx_A Glutaredoxin A, glutare 29.1 54 0.0019 24.7 3.9 68 239-309 16-85 (99)
145 1ovm_A Indole-3-pyruvate decar 28.6 1.9E+02 0.0065 28.6 9.0 27 180-206 500-526 (552)
146 2cpw_A CBL-interacting protein 28.4 31 0.0011 24.4 2.2 27 345-371 18-44 (64)
147 2iht_A Carboxyethylarginine sy 27.8 63 0.0022 32.5 5.3 35 171-206 521-555 (573)
148 3hh1_A Tetrapyrrole methylase 27.2 32 0.0011 27.0 2.3 35 236-270 77-114 (117)
149 1ijb_A VON willebrand factor; 26.7 85 0.0029 26.5 5.3 57 241-299 119-181 (202)
150 2qas_A SSPB, hypothetical prot 26.7 9.7 0.00033 32.2 -0.9 74 40-118 22-107 (157)
151 2nys_A AGR_C_3712P; SSPB, stri 26.5 12 0.00039 32.3 -0.5 73 41-118 15-99 (176)
152 4hs4_A Chromate reductase; tri 26.4 80 0.0028 27.1 5.0 59 253-313 26-96 (199)
153 1u6t_A SH3 domain-binding glut 26.4 1.2E+02 0.0042 24.1 5.8 55 253-309 19-82 (121)
154 3orq_A N5-carboxyaminoimidazol 26.3 1.3E+02 0.0044 28.3 6.9 58 237-298 11-81 (377)
155 3tem_A Ribosyldihydronicotinam 26.3 1E+02 0.0035 27.1 5.8 66 249-315 17-117 (228)
156 3fvw_A Putative NAD(P)H-depend 26.2 1.1E+02 0.0036 26.0 5.8 62 251-314 20-91 (192)
157 2dak_A Ubiquitin carboxyl-term 26.2 50 0.0017 23.1 3.0 26 346-371 9-34 (63)
158 3gx1_A LIN1832 protein; APC633 26.1 2.5E+02 0.0085 22.3 8.3 104 240-355 6-121 (130)
159 2vbi_A Pyruvate decarboxylase; 26.0 50 0.0017 33.2 4.1 27 180-206 500-527 (566)
160 3nyi_A FAT acid-binding protei 25.8 1.6E+02 0.0053 27.1 7.2 67 43-110 70-146 (297)
161 3ged_A Short-chain dehydrogena 25.8 1.5E+02 0.0052 26.4 7.0 53 240-299 3-55 (247)
162 1o6d_A Hypothetical UPF0247 pr 25.4 2.5E+02 0.0086 23.6 7.8 100 240-341 4-114 (163)
163 2e6k_A Transketolase; structur 25.4 1.4E+02 0.0047 30.8 7.4 38 171-209 207-247 (651)
164 1gpu_A Transketolase; transfer 25.3 1.6E+02 0.0054 30.5 7.9 38 171-209 205-247 (680)
165 1bvy_F Protein (cytochrome P45 25.2 1.9E+02 0.0065 24.6 7.2 59 239-307 22-84 (191)
166 3mtq_A Putative phosphoenolpyr 25.0 3E+02 0.01 22.8 10.7 106 240-355 23-136 (159)
167 2hpv_A FMN-dependent NADH-azor 24.8 1.5E+02 0.005 25.0 6.4 66 249-315 19-119 (208)
168 1wji_A Tudor domain containing 24.7 64 0.0022 22.7 3.3 26 346-371 9-34 (63)
169 3kgw_A Alanine-glyoxylate amin 24.6 1.6E+02 0.0053 26.8 7.1 25 264-288 121-145 (393)
170 3h8q_A Thioredoxin reductase 3 24.3 2.2E+02 0.0076 21.5 6.9 68 238-309 16-88 (114)
171 2dag_A Ubiquitin carboxyl-term 23.7 51 0.0017 24.0 2.7 26 346-371 9-34 (74)
172 2bmv_A Flavodoxin; electron tr 23.7 1.1E+02 0.0039 24.7 5.3 47 242-296 4-51 (164)
173 1fov_A Glutaredoxin 3, GRX3; a 23.6 1.4E+02 0.0048 20.5 5.2 71 240-314 2-73 (82)
174 3fwz_A Inner membrane protein 23.5 87 0.003 24.7 4.4 31 239-272 8-38 (140)
175 3rim_A Transketolase, TK; TPP, 23.4 2.1E+02 0.0073 29.8 8.4 40 171-211 225-268 (700)
176 2ozl_A PDHE1-A type I, pyruvat 23.3 2.4E+02 0.0084 26.7 8.2 32 175-207 223-258 (365)
177 2wvg_A PDC, pyruvate decarboxy 23.0 71 0.0024 32.1 4.5 27 180-206 508-535 (568)
178 3rhb_A ATGRXC5, glutaredoxin-C 22.9 1.5E+02 0.005 22.3 5.5 68 239-309 19-91 (113)
179 4a5l_A Thioredoxin reductase; 22.8 1.5E+02 0.005 26.3 6.3 48 237-287 151-198 (314)
180 2jy5_A Ubiquilin-1; UBA, alter 22.8 68 0.0023 21.5 3.0 25 347-371 13-38 (52)
181 4hvk_A Probable cysteine desul 22.7 1.2E+02 0.0043 27.3 5.9 26 277-303 154-179 (382)
182 3fys_A Protein DEGV; fatty aci 22.6 1.4E+02 0.0047 27.9 6.2 67 43-110 100-172 (315)
183 1vl0_A DTDP-4-dehydrorhamnose 22.6 1.3E+02 0.0046 26.3 6.0 56 239-294 11-68 (292)
184 3pl5_A SMU_165, putative uncha 22.6 1.9E+02 0.0067 26.9 7.2 67 43-110 101-177 (320)
185 4e4t_A Phosphoribosylaminoimid 22.3 1.4E+02 0.0047 28.7 6.4 58 236-297 33-103 (419)
186 1vek_A UBP14, ubiquitin-specif 21.6 65 0.0022 24.1 3.0 26 346-371 29-54 (84)
187 4gi5_A Quinone reductase; prot 21.5 1.1E+02 0.0038 28.0 5.2 65 250-315 39-137 (280)
188 3r6w_A FMN-dependent NADH-azor 21.4 2.7E+02 0.0094 23.4 7.6 65 249-314 18-111 (212)
189 2x5n_A SPRPN10, 26S proteasome 21.4 2.4E+02 0.0081 23.9 7.1 51 250-300 121-174 (192)
190 1whc_A RSGI RUH-027, UBA/UBX 3 21.3 55 0.0019 23.1 2.4 24 347-370 10-33 (64)
191 2vbf_A Branched-chain alpha-ke 21.3 2.5E+02 0.0085 28.0 8.2 26 181-206 519-545 (570)
192 1ykg_A SIR-FP, sulfite reducta 21.2 1.1E+02 0.0038 25.0 4.8 34 243-276 13-50 (167)
193 3l4n_A Monothiol glutaredoxin- 21.1 3E+02 0.01 21.6 7.2 67 239-309 14-88 (127)
194 2gfq_A UPF0204 protein PH0006; 20.4 3.8E+02 0.013 24.8 8.6 78 239-317 210-290 (298)
195 2fi9_A Outer membrane protein; 20.1 35 0.0012 27.6 1.2 35 238-272 68-103 (128)
196 2l69_A Rossmann 2X3 fold prote 20.0 2.1E+02 0.0071 22.0 5.5 69 241-316 3-74 (134)
No 1
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=7.4e-67 Score=508.95 Aligned_cols=316 Identities=45% Similarity=0.751 Sum_probs=291.5
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 017410 39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (372)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~ 117 (372)
+++||++|+++|.+++++||+++++++|++ +||+|+.+++|+++|||+||+|+||+|++|+++|+|+|++|+||+++++
T Consensus 2 ~~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t 81 (324)
T 1w85_B 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ 81 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred cchHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEec
Confidence 468999999999999999999999999998 5677777899999999999999999999999999999999999999867
Q ss_pred ccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 017410 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (372)
Q Consensus 118 ~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a 197 (372)
|++|++|++|||++++|+++|++++++++ |+|++.+.|..+.+|+||+++|+++|+++|||+|++|+|++|++.++++|
T Consensus 82 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~-pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a 160 (324)
T 1w85_B 82 FFGFVYEVMDSICGQMARIRYRTGGRYHM-PITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISA 160 (324)
T ss_dssp SGGGGGGTHHHHHTTGGGHHHHTTTSSCC-CCEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCcC-CEEEEEeccCCCCCCCcccccHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999999999999998898 99988545667778999999988999999999999999999999999999
Q ss_pred HhCCCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCC
Q 017410 198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP 277 (372)
Q Consensus 198 ~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P 277 (372)
+++++|+|||+||+++|...+.++.+++.+++||++++++|.|++||+||+++..|++|++.|+++|++++||++++++|
T Consensus 161 ~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P 240 (324)
T 1w85_B 161 IRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQP 240 (324)
T ss_dssp HHSSSCEEEEEETTTSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEEES
T ss_pred HHcCCCEEEEechHhcCCCCCCCCCccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeeeecC
Confidence 99999999999999998755566666677899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc--cccccCCCCcHHHHHHHHh
Q 017410 278 WDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP--LVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 278 ~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~--~lle~~~l~~~~~~~~i~~ 355 (372)
||++.|.++++++++++|+||+...||||++|++++.++++..++.|+.++|.+|.+.+ .++++||+++++|++++++
T Consensus 241 ~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~l~~~~gl~~~~I~~~i~~ 320 (324)
T 1w85_B 241 LDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQAESVWLPNFKDVIETAKK 320 (324)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGGGHHHHSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHHHHHHhCcCHHHHHHHHHH
Confidence 99999999999999999999998899999999999998875456688999999887654 3799999999999998865
No 2
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=2.3e-66 Score=505.38 Aligned_cols=317 Identities=49% Similarity=0.802 Sum_probs=292.1
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 017410 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (372)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i 116 (372)
++++|+++++++|.+++++|++|+++++|++ .+++|+.+++|+++|||+||+|+||+|++|+++|+|+|++|+||++++
T Consensus 2 ~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~ 81 (324)
T 1umd_B 2 ALMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEI 81 (324)
T ss_dssp CEECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence 4679999999999999999999999999998 566777788999999999999999999999999999999999999986
Q ss_pred cccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 017410 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (372)
Q Consensus 117 ~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~ 196 (372)
+|++|++|++|||++++|+++|+++++.++ |+|++.+.|..+.+|+||+++|+++|+++|||+|++|+|++|++.++++
T Consensus 82 t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~-pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 160 (324)
T 1umd_B 82 QFADYIFPGFDQLVSQVAKLRYRSGGQFTA-PLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKA 160 (324)
T ss_dssp SSGGGCGGGHHHHHHTTTTHHHHTTTSSCC-CCEEEEEECSSSSCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHHHHhhcCCCCcC-CEEEEEcCCCCCCCCCccchhHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 799999999999999999999999998898 9998854566677899999999999999999999999999999999999
Q ss_pred hHhCCCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccC
Q 017410 197 CIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (372)
Q Consensus 197 a~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~ 276 (372)
|+++++|+|||+||+++|...++++++++.+++||++++++|.|++||++|++++.|++|++.|+++|++++||++++++
T Consensus 161 a~~~~~Pv~i~~p~~l~~~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~ 240 (324)
T 1umd_B 161 AIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLM 240 (324)
T ss_dssp HHHCSSCEEEEEEGGGSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCEEE
T ss_pred HHhcCCCEEEEechHhcCCCCCCcCCCCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeceec
Confidence 99999999999999999876666766677789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCccc-ccccCCCCcHHHHHHHHh
Q 017410 277 PWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPL-VFEPFYMPTKNKASCLES 355 (372)
Q Consensus 277 P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~-lle~~~l~~~~~~~~i~~ 355 (372)
|||++.|.++++++++++++||+...||||++|++.+.++++..++.|+.++|.+|.+.+. ++++||+++++|++++++
T Consensus 241 P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~l~~~~g~~~~~I~~~i~~ 320 (324)
T 1umd_B 241 PWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYAQDKLYLPTVTRILNAAKR 320 (324)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCSTTHHHHSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHHHHHHhCcCHHHHHHHHHH
Confidence 9999999999999999999999998999999999999988754567889999988876543 788999999999998865
No 3
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=1.6e-65 Score=502.88 Aligned_cols=320 Identities=64% Similarity=1.123 Sum_probs=288.2
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEE
Q 017410 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE 115 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~ 115 (372)
.+++++||++++++|.+++++||+++++++|++.+|+|+.+++|+++|||+||+|+||+|++|+++|+|+|++|+|||++
T Consensus 17 ~~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~ 96 (342)
T 2bfd_B 17 QTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAE 96 (342)
T ss_dssp CEEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHHHCCCeeEEE
Confidence 36678999999999999999999999999999866677778999999999999999999999999999999999999998
Q ss_pred ecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 017410 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (372)
Q Consensus 116 i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~ 195 (372)
++|++|++|++|||++++|+++|+++++.+++|++++.+.|..+.+++||+++|+++|+++|||+|++|+|++|++.+++
T Consensus 97 ~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~~~G~th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~ 176 (342)
T 2bfd_B 97 IQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLL 176 (342)
T ss_dssp CSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCCCCCcchhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHH
Confidence 68999999999999999999999998887654788874433234445566789999999999999999999999999999
Q ss_pred HhHhCCCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhc-CCceeEEeecc
Q 017410 196 SCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKT 274 (372)
Q Consensus 196 ~a~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~ 274 (372)
+|+++++|+|||+|++++|...+.++.+++.+++||++++++|.|++||+||+++..|++|++.|+++ |++++||++++
T Consensus 177 ~a~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~L~~~~Gi~v~vi~~~~ 256 (342)
T 2bfd_B 177 SCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRT 256 (342)
T ss_dssp HHHHSSSCEEEEEEGGGTTSCCEEEESSCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECCE
T ss_pred HHHhcCCcEEEEecchhcCCCCCCCCCcccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHHHHhhcCCCEEEEeeee
Confidence 99999999999999999988666666566778899999999999999999999999999999999999 99999999999
Q ss_pred cCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc-cccccCCCCcHHHHHHH
Q 017410 275 LIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP-LVFEPFYMPTKNKASCL 353 (372)
Q Consensus 275 i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~-~lle~~~l~~~~~~~~i 353 (372)
++|||++.|.++++++++++|+||+...||||++|++++.++++..++.++.++|.+|.+.+ .++++||+++++|++++
T Consensus 257 l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~l~~~~gl~~~~I~~~i 336 (342)
T 2bfd_B 257 IIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDAL 336 (342)
T ss_dssp EESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCSTTHHHHSCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHHHHHHHCcCHHHHHHHH
Confidence 99999999999999999999999998899999999999998875445678999999886544 37899999999999988
Q ss_pred Hh
Q 017410 354 ES 355 (372)
Q Consensus 354 ~~ 355 (372)
++
T Consensus 337 ~~ 338 (342)
T 2bfd_B 337 RK 338 (342)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 4
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=5.7e-65 Score=503.29 Aligned_cols=313 Identities=49% Similarity=0.780 Sum_probs=254.6
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 017410 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (372)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i 116 (372)
++++||++++++|.+++++|++|+++++|++ .+++|+.+++|+++|||+||+|+||+|++|+++|+|+|++|+|||+++
T Consensus 49 ~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~ 128 (369)
T 1ik6_A 49 MMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEI 128 (369)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEe
Confidence 5678999999999999999999999999998 556666788999999999999999999999999999999999999987
Q ss_pred cccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 017410 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (372)
Q Consensus 117 ~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~ 195 (372)
+|++|++|++|||++++|+++|++++++++ |++++.+ +|..+ +|+||++.|+++|+++|||+|++|+|++|++.+++
T Consensus 129 tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~-pvv~~~~~gg~~g-~g~~hs~~~~a~l~~iPnl~V~~Psd~~e~~~ll~ 206 (369)
T 1ik6_A 129 QFVDFIWLGADELLNHIAKLRYRSGGNYKA-PLVVRTPVGSGTR-GGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLK 206 (369)
T ss_dssp CCC----CCHHHHHHHHHHHHC------CC-CCEEEEEECC------------HHHHHHTCTTCEEECCCSHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhCCCCCC-CEEEEEeCCCCCC-CCccccccHHHHHcCCCCcEEEecCCHHHHHHHHH
Confidence 799999999999999999999999998888 9998854 55444 88999998899999999999999999999999999
Q ss_pred HhHhCCCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeeccc
Q 017410 196 SCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (372)
Q Consensus 196 ~a~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i 275 (372)
+|++.++|++||+||+++|...+.++.+++.+++|+++++++|.|++||++|+++..|++|++.|+ | +++|||++++
T Consensus 207 ~A~~~~~Pv~i~~p~~l~r~~~~~v~~~~~~~~~G~~~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~l 283 (369)
T 1ik6_A 207 AAIRGDDPVVFLEPKILYRAPREEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQTL 283 (369)
T ss_dssp HHHHSSSCEEEEEEGGGSSCCCEEEECSSCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCEE
T ss_pred HHHhCCCCEEEEEehhhhccCCCCcCCCcccccCCceEEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeeec
Confidence 999999999999999999875455555567788999999999999999999999999999999997 8 9999999999
Q ss_pred CCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc--cccccCCCCcHHHHHHH
Q 017410 276 IPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP--LVFEPFYMPTKNKASCL 353 (372)
Q Consensus 276 ~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~--~lle~~~l~~~~~~~~i 353 (372)
+|||++.|.++++++++++|+||+...||||++|++++.++++..++.|+.++|.+|.+.+ .++++||+++++|++++
T Consensus 284 ~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~l~~~~~~~l~~pv~~vg~~d~~~~~~~l~~~~gl~~~~I~~~i 363 (369)
T 1ik6_A 284 NPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIAADAAYAPTVERIIKAI 363 (369)
T ss_dssp ETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHHHHHHSGGGCSSCCEEEEECCCC------------CHHHHHHHH
T ss_pred CCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHHHHhhCccccCCCeEEEcCCCcCCCCHHHHHHhCcCHHHHHHHH
Confidence 9999999999999999999999999899999999999998876556788999999887654 37999999999999998
Q ss_pred Hh
Q 017410 354 ES 355 (372)
Q Consensus 354 ~~ 355 (372)
++
T Consensus 364 ~~ 365 (369)
T 1ik6_A 364 EY 365 (369)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 5
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=1.6e-64 Score=495.45 Aligned_cols=318 Identities=36% Similarity=0.595 Sum_probs=287.6
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEE
Q 017410 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE 115 (372)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~ 115 (372)
..+++++++++++|.+++++|++|+++++|++ .|+.|+.+++|+++|||+||+|+||+|++|+++|+|+|++|+|||++
T Consensus 12 ~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~ 91 (341)
T 2ozl_B 12 SLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICE 91 (341)
T ss_dssp CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEE
Confidence 35689999999999999999999999999998 45566668899999999999999999999999999999999999998
Q ss_pred ecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 017410 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (372)
Q Consensus 116 i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~ 195 (372)
++|++|++|++|||++++|+++||+++..++ |++++.+.|..|++|++|||..+++|+++|||+|++|+|++|++.+++
T Consensus 92 ~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~-pvv~~~~~G~~g~~G~tHs~~~ea~l~~iP~l~V~~Psd~~e~~~~l~ 170 (341)
T 2ozl_B 92 FMTFNFSMQAIDQVINSAAKTYYMSGGLQPV-PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIK 170 (341)
T ss_dssp CSSGGGGGGGHHHHHTTTTTHHHHTTSSCCC-CCEEEEECSCCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred eccHHHHHHHHHHHHHHHHHHHhhccccCCC-CEEEEEcCcCCCCCCcchhhHHHHHhccCCCCEEEEeCCHHHHHHHHH
Confidence 7799999999999999999999999999898 999986557777899999775349999999999999999999999999
Q ss_pred HhHhCCCcEEEEeccccccccc---ccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEee
Q 017410 196 SCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (372)
Q Consensus 196 ~a~~~~~Pv~ir~p~~l~r~~~---~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~ 272 (372)
+|+++++|+|||+||.+++.+. +.++++++.+++||++++++|.|++||+||+++..+++|++.|+++|++++||++
T Consensus 171 ~a~~~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv~~ 250 (341)
T 2ozl_B 171 SAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINM 250 (341)
T ss_dssp HHHHSSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHhcCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEEee
Confidence 9999999999999998866422 2234456778899999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHH-hccccCCCcEEEEeccCCCcc---cccccCCCCcHH
Q 017410 273 KTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILE-RCFLRLEAPVARVCGLDTPFP---LVFEPFYMPTKN 348 (372)
Q Consensus 273 ~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~-~~~~~l~~~v~~ig~~~~~~~---~lle~~~l~~~~ 348 (372)
++++|||++.|.+.++++++++++||+...||||++|++++.+ +++..++.|+.++|.+|.+.+ .++++||+++++
T Consensus 251 ~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~~l~~~~g~~~~~ 330 (341)
T 2ozl_B 251 RTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKD 330 (341)
T ss_dssp CEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSHHHHHTTSCCHHH
T ss_pred eeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcHHHHHHhCcCHHH
Confidence 9999999999999999999999999999899999999999998 775456789999999887765 468899999999
Q ss_pred HHHHHHh
Q 017410 349 KASCLES 355 (372)
Q Consensus 349 ~~~~i~~ 355 (372)
|++++++
T Consensus 331 I~~~i~~ 337 (341)
T 2ozl_B 331 IIFAIKK 337 (341)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998865
No 6
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=3e-64 Score=493.24 Aligned_cols=315 Identities=45% Similarity=0.817 Sum_probs=284.8
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 017410 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (372)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i 116 (372)
++++||++++++|.+++++|++++++++|++ .+++|+.+++|+++|||+||+|+||+|++|+++|+|+|++|+|||+++
T Consensus 3 ~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~ 82 (338)
T 1qs0_B 3 TTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEI 82 (338)
T ss_dssp EECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CcchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEe
Confidence 4679999999999999999999999999998 667777789999999999999999999999999999999999999986
Q ss_pred cccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 017410 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (372)
Q Consensus 117 ~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~ 196 (372)
+|++|++|++|||++++|+++|+++++.++ |++++.+.|..+.+++||+++|+++|+++|||+|++|+|++|+++++++
T Consensus 83 t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~-pvv~~~~~~g~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 161 (338)
T 1qs0_B 83 QFADYFYPASDQIVSEMARLRYRSAGEFIA-PLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA 161 (338)
T ss_dssp SCGGGCGGGHHHHHTTTTTHHHHTTTSSCC-CCEEEEEECCSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHHHhhhcCCCCCC-CEEEEEeCCCCCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 899999999999999999999999999888 9999864333344566667999999999999999999999999999999
Q ss_pred hHhCCCcEEEEecccccccccc----------------cCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHH
Q 017410 197 CIRDPNPVVFFEPKWLYRLSVE----------------EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDA 260 (372)
Q Consensus 197 a~~~~~Pv~ir~p~~l~r~~~~----------------~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L 260 (372)
|+++++|++||+|++++|...+ .++.+++.+++||++++++|.|++|||+|+++..|++|++.
T Consensus 162 A~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~- 240 (338)
T 1qs0_B 162 SIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAEE- 240 (338)
T ss_dssp HHHSSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESSCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHHH-
T ss_pred HHhcCCcEEEEEchHhhcCcccccccCccchhhcccccccCCCCcccccCceeEecCCCCEEEEEeCHHHHHHHHHHHH-
Confidence 9999999999999999987655 45555567889999999999999999999999999999987
Q ss_pred HhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCccc-cc
Q 017410 261 EKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPL-VF 339 (372)
Q Consensus 261 ~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~-ll 339 (372)
+|++++||++++++|||++.|.++++++++++|+||+...|||+++|++++.++++..++.++.++|.+|.++++ ++
T Consensus 241 --~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~~l~ 318 (338)
T 1qs0_B 241 --SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHAQE 318 (338)
T ss_dssp --HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCSTTH
T ss_pred --cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcHHHH
Confidence 699999999999999999999999999999999999988999999999999988753456789999998876554 78
Q ss_pred ccCCCCcHHHHHHHHhC
Q 017410 340 EPFYMPTKNKASCLESF 356 (372)
Q Consensus 340 e~~~l~~~~~~~~i~~~ 356 (372)
++|++++++|++++++.
T Consensus 319 ~~~g~~~~~I~~~i~~~ 335 (338)
T 1qs0_B 319 WAYFPGPSRVGAALKKV 335 (338)
T ss_dssp HHHSCCHHHHHHHHHHS
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 99999999999998764
No 7
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=3.6e-55 Score=458.84 Aligned_cols=296 Identities=20% Similarity=0.264 Sum_probs=261.0
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCC-eeEE
Q 017410 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGN-RAIA 114 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~-~pi~ 114 (372)
.+.++++|++++++|.+++++||+++++++|++.| + .++.|+++| |+||||+||+|++|+++|+|||++|+ +|++
T Consensus 309 ~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~-~--~~~~~~~~~-p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~ 384 (616)
T 3mos_A 309 VGDKIATRKAYGQALAKLGHASDRIIALDGDTKNS-T--FSEIFKKEH-PDRFIECYIAEQNMVSIAVGCATRNRTVPFC 384 (616)
T ss_dssp TTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHH-H--SHHHHHHHC-GGGEEECCSCHHHHHHHHHHHHGGGCCEEEE
T ss_pred cccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCC-c--chhhHHHhC-CCCeEEcCccHHHHHHHHHHHHHcCCCCEEE
Confidence 45678999999999999999999999999999732 2 368899999 99999999999999999999999997 7888
Q ss_pred EecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCC-ChhHHHHHcCCCCcEEEeeCCHHHHH
Q 017410 115 EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAK 191 (372)
Q Consensus 115 ~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~H-s~~d~a~l~~iP~l~V~~Psd~~e~~ 191 (372)
. +|++|++|++|||+++ ++++ . |++++ ++.|. .|.+|++| +++|+++|+++|||+|++|+|++|++
T Consensus 385 ~-~f~~Fl~~a~dqi~~~-a~~~--------~-~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~ 453 (616)
T 3mos_A 385 S-TFAAFFTRAFDQIRMA-AISE--------S-NINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATE 453 (616)
T ss_dssp E-EEGGGGGGGHHHHHHH-HHTT--------C-CEEEEEESBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHH
T ss_pred E-ehHHHHHHHHHHHHHH-HHhC--------C-CeEEEEECCCccccCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHH
Confidence 7 7999999999999986 5443 4 76665 67776 68788777 47899999999999999999999999
Q ss_pred HHHHHhHhCCCcEEEEecccccccccccCCCCCccccCCceEEeeeCCc--EEEEEeChhHHHHHHHHHHHHhcCCceeE
Q 017410 192 GLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSD--ITLVGWGAQLSIMEQACLDAEKEGISCEL 269 (372)
Q Consensus 192 ~~l~~a~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~d--i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~v 269 (372)
.+++++++.++|++||.+| ...+.++...+.+++||++++++|.| ++||++|+++..|++|+++|+++||+++|
T Consensus 454 ~~l~~a~~~~gp~~ir~~r----~~~p~~~~~~~~~~~Gka~vl~eg~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~V 529 (616)
T 3mos_A 454 KAVELAANTKGICFIRTSR----PENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRV 529 (616)
T ss_dssp HHHHHHHTCCSEEEEECCS----SCCBCCSCTTCCCCTTCCEEEECCSSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHhcCCCEEEEEeC----CCCCccCCCcccccCCeEEEEEeCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997665 34445555566788999999999876 99999999999999999999999999999
Q ss_pred EeecccCCCCHHHHHHHHhcC-CeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCc----ccccccCCC
Q 017410 270 IDLKTLIPWDKETVEASVRKT-GRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF----PLVFEPFYM 344 (372)
Q Consensus 270 i~~~~i~P~d~~~l~~~~~~~-~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~----~~lle~~~l 344 (372)
||+++++|||++.|.++++++ ++|+|+||++..||+|++|++.+.+++ +.++.++|.++.+. ++++++|||
T Consensus 530 idlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~~~~----~~~v~~~g~~~f~~~g~~~~l~~~~gl 605 (616)
T 3mos_A 530 LDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEP----GITVTHLAVNRVPRSGKPAELLKMFGI 605 (616)
T ss_dssp EECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHTTCT----TCEEEEEEECSCCCCSCHHHHHHHTTC
T ss_pred EEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHHhcC----CCCEEEEeCCCCCCCCCHHHHHHHHCc
Confidence 999999999999999999999 999999999999999999999998864 56899999886442 257888999
Q ss_pred CcHHHHHHHH
Q 017410 345 PTKNKASCLE 354 (372)
Q Consensus 345 ~~~~~~~~i~ 354 (372)
++++|+++++
T Consensus 606 ~~~~I~~~i~ 615 (616)
T 3mos_A 606 DRDAIAQAVR 615 (616)
T ss_dssp SHHHHHHHHT
T ss_pred CHHHHHHHHh
Confidence 9999888875
No 8
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.4e-54 Score=451.90 Aligned_cols=293 Identities=17% Similarity=0.281 Sum_probs=261.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 017410 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (372)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~ 117 (372)
.+.+|+++|+++|.+++++|++++++++|+.. .++ +++|+++| |+||+|+||+|++|+++|+|+|++|+|||+++
T Consensus 317 ~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~--~~~-~~~~~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~- 391 (621)
T 2o1s_A 317 GLPSYSKIFGDWLCETAAKDNKLMAITPAMRE--GSG-MVEFSRKF-PDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAI- 391 (621)
T ss_dssp -CCBHHHHHHHHHHHHHHHCTTEEEEESSCTT--TTT-CHHHHHHC-TTTEEECCSCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred chHHHHHHHHHHHHHHHhhCcCEEEEeCcccC--CcC-hHHHHHhC-CCceEecCcCHHHHHHHHHHHHHCCCEEEEEe-
Confidence 45799999999999999999999999999973 333 78899999 99999999999999999999999999999995
Q ss_pred ccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCCCh-hHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 017410 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYHSQ-SPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (372)
Q Consensus 118 ~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~Hs~-~d~a~l~~iP~l~V~~Psd~~e~~~~l~ 195 (372)
|++|++|++|||++++|+++ + |++++ .++|..|++|++|++ +|+++|+++|||+|++|+|++|++.+++
T Consensus 392 ~~~F~~~a~dqi~~~~a~~~--------~-pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~ 462 (621)
T 2o1s_A 392 YSTFLQRAYDQVLHDVAIQK--------L-PVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLY 462 (621)
T ss_dssp ETTGGGGGHHHHHHTTTTTT--------C-CCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhcC--------C-CEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHH
Confidence 99999999999999998654 6 88888 456767778889975 6999999999999999999999999999
Q ss_pred HhHhC-CCcEEEEecccccccccccCCCCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecc
Q 017410 196 SCIRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (372)
Q Consensus 196 ~a~~~-~~Pv~ir~p~~l~r~~~~~v~~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 274 (372)
+|++. ++|+|||+||..... .+.+.. +.+++||++++++|.|++||++|+++..|++| ++||+++||++++
T Consensus 463 ~a~~~~~~Pv~i~~~r~~~~~--~~~~~~-~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~ 534 (621)
T 2o1s_A 463 TGYHYNDGPSAVRYPRGNAVG--VELTPL-EKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVDMRF 534 (621)
T ss_dssp HHHHCCSSCEEEECCSSBCCC--CCCCCC-CCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEECCE
T ss_pred HHHHcCCCCEEEEeCCCCCCC--CCCCcc-ccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEecCc
Confidence 99998 999999999865422 112222 66889999999999999999999999999999 5599999999999
Q ss_pred cCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc-----cccccCCCCcHHH
Q 017410 275 LIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP-----LVFEPFYMPTKNK 349 (372)
Q Consensus 275 i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~-----~lle~~~l~~~~~ 349 (372)
++|||++.|.++++++++++|+||+...||||++|++++.+++ ++.|+.++|.+|.+.+ +++++||+++++|
T Consensus 535 ~~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~---~~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I 611 (621)
T 2o1s_A 535 VKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHR---KPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGM 611 (621)
T ss_dssp EESCCHHHHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTT---CCCCEEEEEECSSCCCCSCHHHHHHHTTCSHHHH
T ss_pred cCCCCHHHHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcC---CCCCeEEEecCCcCCCCCCHHHHHHHHCcCHHHH
Confidence 9999999999999999999999999999999999999999886 3689999999886553 4799999999999
Q ss_pred HHHHHh
Q 017410 350 ASCLES 355 (372)
Q Consensus 350 ~~~i~~ 355 (372)
++++++
T Consensus 612 ~~~i~~ 617 (621)
T 2o1s_A 612 EAKIKA 617 (621)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 9
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=4.4e-54 Score=452.37 Aligned_cols=294 Identities=20% Similarity=0.288 Sum_probs=264.5
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecc
Q 017410 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (372)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~ 118 (372)
+.+|+++|+++|.+++++|++++++++|+.. .++ +++|+++| |+||+|+||+|++|+++|+|||++|+|||+++ |
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~--~~~-~~~f~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~-~ 395 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMRE--GSG-LVEFSRVH-PHRYLDVGIAEEVAVTTAAGMALQGMRPVVAI-Y 395 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTT--TTT-CHHHHHHC-GGGEEECCSCHHHHHHHHHHHHHTTCEEEEEE-E
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccC--CcC-hHHHHHhc-CcceEeccccHHHHHHHHHHHHHcCCEEEEEe-c
Confidence 6799999999999999999999999999973 333 78999999 99999999999999999999999999999995 9
Q ss_pred cccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCCCCCCCCCCCh-hHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 017410 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGHGGHYHSQ-SPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (372)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~~g~~G~~Hs~-~d~a~l~~iP~l~V~~Psd~~e~~~~l~~ 196 (372)
++|++|++|||++++|+++ + |++++ +++|..|++|++|++ +|+++||++|||+|++|+|++|++.++++
T Consensus 396 ~~F~~~a~dqi~~~~a~~~--------~-pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~ 466 (629)
T 2o1x_A 396 STFLQRAYDQVLHDVAIEH--------L-NVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKY 466 (629)
T ss_dssp HHHHGGGHHHHHHTTTTTT--------C-CCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcC--------C-CEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHH
Confidence 9999999999999999754 6 88888 566767778888875 69999999999999999999999999999
Q ss_pred hHhCCCcEEEEecccccccccccCC-CCCccccCCceEEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeeccc
Q 017410 197 CIRDPNPVVFFEPKWLYRLSVEEVP-EDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (372)
Q Consensus 197 a~~~~~Pv~ir~p~~l~r~~~~~v~-~~~~~~~~Gk~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i 275 (372)
|++.++|+|||++|... +.++ +..+.+++||++++++|.|++||++|+++..|++|++.|+ +++|||++++
T Consensus 467 a~~~~~Pv~i~~~r~~~----~~~~~~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~ 538 (629)
T 2o1x_A 467 AQTHDGPFAIRYPRGNT----AQVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNARFV 538 (629)
T ss_dssp HHHSSSCEEEECCSSBC----CCCCTTCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEE
T ss_pred HHhCCCCEEEEecCCCC----CCCcccccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCC
Confidence 99999999999887643 2222 2345688999999999999999999999999999999996 8999999999
Q ss_pred CCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCcc-----cccccCCCCcHHHH
Q 017410 276 IPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP-----LVFEPFYMPTKNKA 350 (372)
Q Consensus 276 ~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~-----~lle~~~l~~~~~~ 350 (372)
+|||++.|.++++++++++|+||+...||||++|++++.+++ ++.|+.++|.+|.+.+ +++++||+++++|+
T Consensus 539 ~Pld~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~---~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~ 615 (629)
T 2o1x_A 539 KPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMN---LHPTVRVLGIPDEFQEHATAESVHARAGIDAPAIR 615 (629)
T ss_dssp ESCCHHHHHHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTT---CCCEEEEEEECSSCCCSCCHHHHHHHHTCSHHHHH
T ss_pred CCCcHHHHHHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhC---CCCCeEEEeeCCcCCCCCCHHHHHHHHCcCHHHHH
Confidence 999999999999999999999999999999999999999876 3679999999886553 57999999999999
Q ss_pred HHHHhCC
Q 017410 351 SCLESFK 357 (372)
Q Consensus 351 ~~i~~~~ 357 (372)
+++++..
T Consensus 616 ~~i~~~~ 622 (629)
T 2o1x_A 616 TVLAELG 622 (629)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9998764
No 10
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=8e-49 Score=410.76 Aligned_cols=282 Identities=13% Similarity=0.123 Sum_probs=233.3
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeEEE
Q 017410 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAE 115 (372)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~ 115 (372)
+.++.+|++++++|.++++.+|+++++++|++ ++....-.+.++|+|+||||+||+||+|+++|+|||+. |+|||++
T Consensus 335 ~~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~--~s~~~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~ 412 (632)
T 3l84_A 335 GKDLATRDSNGEILNVLAKNLEGFLGGSADLG--PSNKTELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSA 412 (632)
T ss_dssp TCCBCHHHHHHHHHHHHHHHCTTEEEEESSCH--HHHTCCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEE
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEecccC--CccCcchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEE
Confidence 46789999999999999999999999999987 33221111236788999999999999999999999999 9999999
Q ss_pred ecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHH
Q 017410 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKG 192 (372)
Q Consensus 116 i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~ 192 (372)
+ |++|++|++|||++ .|+++ + |++++ ++.|. +|.+|+||+ ++|+++||+||||+|++|+|+.|++.
T Consensus 413 ~-f~~F~~~~~~~ir~-~a~~~--------~-pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~ 481 (632)
T 3l84_A 413 T-FFIFSEYLKPAARI-AALMK--------I-KHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVK 481 (632)
T ss_dssp E-EGGGHHHHHHHHHH-HHHHT--------C-CCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHH
T ss_pred e-cHHHHHHHHHHHHH-HhccC--------C-CEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHH
Confidence 5 99999999999985 67654 6 88887 45554 677888775 78999999999999999999999999
Q ss_pred HHHHhHhCCCcEEEEecccccccccccCCCC-CccccCCce-EEeee--CCcEEEEEeChhHHHHHHHHHHHHhcCCcee
Q 017410 193 LLLSCIRDPNPVVFFEPKWLYRLSVEEVPED-DYMLPLSEA-EVIRE--GSDITLVGWGAQLSIMEQACLDAEKEGISCE 268 (372)
Q Consensus 193 ~l~~a~~~~~Pv~ir~p~~l~r~~~~~v~~~-~~~~~~Gk~-~v~~~--g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~ 268 (372)
++++|++.++|+|||++|.. . ++.. .+..++++. +++++ |.|++||++|++++.|++|++.|+++||+++
T Consensus 482 ~l~~A~~~~~Pv~ir~~r~~----~--~~~~~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~ 555 (632)
T 3l84_A 482 AWQIALNADIPSAFVLSRQK----L--KALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACN 555 (632)
T ss_dssp HHHHHHHCSSCEEEECCSSC----B--CCCCCCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHhCCCCEEEEEcCCC----C--CCCccccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCCeE
Confidence 99999999999999887642 2 2222 233456654 78888 8999999999999999999999999999999
Q ss_pred EEeecccCCCCHHH--HHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCC-----Cccccccc
Q 017410 269 LIDLKTLIPWDKET--VEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT-----PFPLVFEP 341 (372)
Q Consensus 269 vi~~~~i~P~d~~~--l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~-----~~~~lle~ 341 (372)
|||++|++|||++. +.+++.+ ++||++|++. ..||++.+ . .++|. |. +.++++++
T Consensus 556 Vi~~~~i~PlD~~~~~~~~sv~~-~~vv~vE~~~-~~g~~~~~------------~---~~iGi-d~Fg~sg~~~~l~~~ 617 (632)
T 3l84_A 556 VVSMPCFELFEKQDKAYQERLLK-GEVIGVEAAH-SNELYKFC------------H---KVYGI-ESFGESGKDKDVFER 617 (632)
T ss_dssp EEECSBHHHHHTSCHHHHHHHCC-SEEEEECSSC-CGGGGGTC------------S---EEECC-CSCCCSSCHHHHHHH
T ss_pred EEecCcCCCcchhHHHHHHHhcC-CCEEEEeCCh-hhhHHHHh------------C---eEEEc-CCCcccCCHHHHHHH
Confidence 99999999999874 6677766 7899999997 45664321 1 45665 43 34578999
Q ss_pred CCCCcHHHHHHHHh
Q 017410 342 FYMPTKNKASCLES 355 (372)
Q Consensus 342 ~~l~~~~~~~~i~~ 355 (372)
|||++++|++++++
T Consensus 618 ~Glt~~~I~~~i~~ 631 (632)
T 3l84_A 618 FGFSVSKLVNFILS 631 (632)
T ss_dssp TTCSHHHHHHHHTT
T ss_pred hCcCHHHHHHHHhh
Confidence 99999999998864
No 11
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=4.8e-49 Score=415.69 Aligned_cols=293 Identities=12% Similarity=0.114 Sum_probs=235.9
Q ss_pred CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCC-ccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCe
Q 017410 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGG-VFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNR 111 (372)
Q Consensus 35 ~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg-~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~ 111 (372)
..++++++|++++++|.++++++|+++++++|++ +++ .++.+++|.++|+|+||||+||+||+|+++|+|||+. |+|
T Consensus 374 ~~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~GlA~~gG~~ 453 (690)
T 3m49_A 374 ELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIALHGGLK 453 (690)
T ss_dssp CTTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCE
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHHHHHHcCCCE
Confidence 3457899999999999999999999999999997 222 2345678888877999999999999999999999999 899
Q ss_pred eEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCCHH
Q 017410 112 AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPR 188 (372)
Q Consensus 112 pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~ 188 (372)
||++ +|+.|+..+..|||+ +|+++ + ||+++ +++|. +|++|+||+ ++|+++||+||||+|++|+|+.
T Consensus 454 P~~~-tf~~Fs~f~~~air~-~al~~--------l-pVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~ 522 (690)
T 3m49_A 454 TYGG-TFFVFSDYLRPAIRL-AALMQ--------L-PVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGN 522 (690)
T ss_dssp EEEE-EEGGGGGGGHHHHHH-HHHHT--------C-CCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHH
T ss_pred EEEE-ecHHHHHHHHHHHHH-HHhcC--------C-CcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHH
Confidence 9999 476666545556774 67654 6 88888 56665 688888885 6899999999999999999999
Q ss_pred HHHHHHHHhHhC-CCcEEEEecccccccccccCCCCC----ccccCCceEEeeeCC----cEEEEEeChhHHHHHHHHHH
Q 017410 189 QAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDD----YMLPLSEAEVIREGS----DITLVGWGAQLSIMEQACLD 259 (372)
Q Consensus 189 e~~~~l~~a~~~-~~Pv~ir~p~~l~r~~~~~v~~~~----~~~~~Gk~~v~~~g~----di~ii~~G~~~~~a~~Aa~~ 259 (372)
|++.++++|++. ++|+|||+||. ..+.++.++ +.++.|+ +++++|. |++||++|+++..|++|++.
T Consensus 523 E~~~~l~~Ai~~~~~Pv~ir~~R~----~~p~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~Al~Aa~~ 597 (690)
T 3m49_A 523 ESVAAWRLALESTNKPTALVLTRQ----DLPTLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLAVEAQKA 597 (690)
T ss_dssp HHHHHHHHHHHCSSSCEEEECCSS----EEECCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEEeecc----cCCCCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHHHHHHHH
Confidence 999999999998 79999987764 333332222 4577887 6888875 99999999999999999999
Q ss_pred HHhcCCceeEEeecccCCCCH--HHHHHHHh--cCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEec----c
Q 017410 260 AEKEGISCELIDLKTLIPWDK--ETVEASVR--KTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCG----L 331 (372)
Q Consensus 260 L~~~Gi~v~vi~~~~i~P~d~--~~l~~~~~--~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~----~ 331 (372)
|+++||+++|||++|++|||. +++.+.+. +++++|++|++...| |.+ ++.+.+ ..+|. .
T Consensus 598 L~~~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G-~~~----~~~~~~--------~~igid~Fg~ 664 (690)
T 3m49_A 598 LAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFG-WHR----YVGLEG--------DVLGIDTFGA 664 (690)
T ss_dssp HHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTT-THH----HHTTTC--------EEECCCSCCC
T ss_pred HHhcCCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhh-HHH----HhccCC--------CEEccCcCcC
Confidence 999999999999999999986 45555554 578899999998655 543 333322 23443 2
Q ss_pred CCCcccccccCCCCcHHHHHHHHhC
Q 017410 332 DTPFPLVFEPFYMPTKNKASCLESF 356 (372)
Q Consensus 332 ~~~~~~lle~~~l~~~~~~~~i~~~ 356 (372)
..+.++++++|||++++|++++++.
T Consensus 665 sg~~~~l~~~~Glt~e~I~~~i~~~ 689 (690)
T 3m49_A 665 SAPGEKIMEEYGFTVENVVRKVKEM 689 (690)
T ss_dssp SSCHHHHHHHTTCSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 2345578999999999999988753
No 12
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=1e-48 Score=414.16 Aligned_cols=290 Identities=14% Similarity=0.150 Sum_probs=239.8
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCc-cccchhHHHH---hCC---CceEecchhHHHHHHHHHHHHh
Q 017410 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGV-FRCTTGLADR---FGK---SRVFNTPLCEQGIVGFAIGLAA 107 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~-~~~~~~~~~~---~~p---~r~i~~GIaE~~~vg~A~GlA~ 107 (372)
.++++++|+|++++|.++++.+|+++++++|++ ++++ ++.+.+|+++ | | +||||+||+||+|+++|+|||+
T Consensus 391 ~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~-p~~~~R~~d~GIaE~~mv~~AaGlA~ 469 (711)
T 3uk1_A 391 RGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGP-GVQWGNHINYGVREFGMSAAINGLVL 469 (711)
T ss_dssp HCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSS-SEECCSEEECCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccC-CCCCCcEEEeCccHHHHHHHHHHHHH
Confidence 367789999999999999999999999999997 2222 1235678888 9 8 9999999999999999999999
Q ss_pred c-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEe
Q 017410 108 M-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVI 183 (372)
Q Consensus 108 ~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~ 183 (372)
. |++||++ +|++|++++++|||+ +|+++ + |++++ ++.|. .|++|+||+ ++|+++||+||||+|++
T Consensus 470 ~~G~~Pv~~-~f~~F~~~~~~~ir~-~a~~~--------l-pv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~ 538 (711)
T 3uk1_A 470 HGGYKPFGG-TFLTFSDYSRNALRV-AALMK--------V-PSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWR 538 (711)
T ss_dssp HSSCEEEEE-EEGGGHHHHHHHHHH-HHHHT--------C-CCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEEC
T ss_pred cCCCEEEEE-EhHHHHHHHHHHHHH-hhhcC--------C-CEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEe
Confidence 5 9999999 599999999999986 67654 5 88887 45554 677888775 78999999999999999
Q ss_pred eCCHHHHHHHHHHhHhCCCcEEEEecccccccccccCCCCC---ccccCCceEEeee--C----CcEEEEEeChhHHHHH
Q 017410 184 PRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDD---YMLPLSEAEVIRE--G----SDITLVGWGAQLSIME 254 (372)
Q Consensus 184 Psd~~e~~~~l~~a~~~~~Pv~ir~p~~l~r~~~~~v~~~~---~~~~~Gk~~v~~~--g----~di~ii~~G~~~~~a~ 254 (372)
|+|+.|++.++++|++.++|+|||++|. ..+.++.++ +.++.|++ ++++ | .|++||++|+++..|+
T Consensus 539 Pad~~E~~~~l~~Ai~~~~Pv~ir~~r~----~~p~~~~~~~~~~~i~~G~~-vl~~~~G~~~~~dvtiia~G~~v~~al 613 (711)
T 3uk1_A 539 PADTVETAVAWTYAVAHQHPSCLIFSRQ----NLAFNARTDAQLANVEKGGY-VLRDWDEEIVARKIILIATGSEVELAM 613 (711)
T ss_dssp CSSHHHHHHHHHHHHHSSSCEEEECCSS----EECCCCCCHHHHHHGGGSSE-EEECCCSSCCSEEEEEEECTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEeeCC----CCCCCCCccccccccCCCeE-EEEecCCCCCCCCEEEEEecHHHHHHH
Confidence 9999999999999999999999977653 444444333 46778885 6664 6 7999999999999999
Q ss_pred HHHHHHHhcCCceeEEeecccCCCCHHH--HHHHHhcCC-eEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEecc
Q 017410 255 QACLDAEKEGISCELIDLKTLIPWDKET--VEASVRKTG-RLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGL 331 (372)
Q Consensus 255 ~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~--l~~~~~~~~-~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~ 331 (372)
+|++.|+++||+++|||++|++|||.+. +.+++.++. .+|++|++. .+||++.+. . +..++|..
T Consensus 614 ~Aa~~L~~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~-~~g~~~~~g----~--------~~~~iGid 680 (711)
T 3uk1_A 614 KAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGV-TDFWRKYVG----L--------EGGVVGID 680 (711)
T ss_dssp HHHHHHHHTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSC-SGGGHHHHT----T--------TSEEECCC
T ss_pred HHHHHHHHcCCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCc-cccHHHHhC----C--------CceEEEeC
Confidence 9999999999999999999999999875 567777765 589999986 577876552 1 12456542
Q ss_pred ----CCCcccccccCCCCcHHHHHHHHh
Q 017410 332 ----DTPFPLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 332 ----~~~~~~lle~~~l~~~~~~~~i~~ 355 (372)
..+.+.++++|||++++|++++++
T Consensus 681 ~Fg~sg~~~~L~~~~Glt~e~Iv~~~~~ 708 (711)
T 3uk1_A 681 TFGESAPAGVLFKHFGFTVEHVIETAKA 708 (711)
T ss_dssp SCCCSSCHHHHHHHTTCSHHHHHHHHHH
T ss_pred CCcCcCCHHHHHHHHCcCHHHHHHHHHH
Confidence 124457899999999999998875
No 13
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.3e-48 Score=410.38 Aligned_cols=290 Identities=13% Similarity=0.110 Sum_probs=238.2
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCc-cccchhHHHHh-----CC----CceEecchhHHHHHHHHHHH
Q 017410 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGV-FRCTTGLADRF-----GK----SRVFNTPLCEQGIVGFAIGL 105 (372)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~-~~~~~~~~~~~-----~p----~r~i~~GIaE~~~vg~A~Gl 105 (372)
.+++++|++++++|.+++++||++|++++|++ ++++ ++.+++|+++| +| +||||+||+||+|+++|+||
T Consensus 372 ~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~Gl 451 (700)
T 3rim_A 372 SKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGI 451 (700)
T ss_dssp SSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHH
Confidence 46789999999999999999999999999997 2222 23357788888 36 69999999999999999999
Q ss_pred Hhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEE
Q 017410 106 AAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKV 181 (372)
Q Consensus 106 A~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V 181 (372)
|+. |++||++ +|+.|+.++++|||+ +|+++ + |++++ ++.|. .|++|+||+ ++|+++||+||||+|
T Consensus 452 A~~gG~~Pv~~-tF~~F~d~~~~~ir~-~al~~--------l-pvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~V 520 (700)
T 3rim_A 452 VLHGPTRAYGG-TFLQFSDYMRPAVRL-AALMD--------I-DTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSV 520 (700)
T ss_dssp HHHSSCEEEEE-EEGGGGGGGHHHHHH-HHHHT--------C-CCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCEE
T ss_pred HHcCCCEEEEE-ecHHHHHHHHHHHHH-hcCCC--------C-CEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCEE
Confidence 999 9999999 799999999999885 77654 5 88887 45554 688888885 789999999999999
Q ss_pred EeeCCHHHHHHHHHHhHhCC---CcEEEEecccccccccccCCCC-CccccCCceEEeeeCC--------cEEEEEeChh
Q 017410 182 VIPRSPRQAKGLLLSCIRDP---NPVVFFEPKWLYRLSVEEVPED-DYMLPLSEAEVIREGS--------DITLVGWGAQ 249 (372)
Q Consensus 182 ~~Psd~~e~~~~l~~a~~~~---~Pv~ir~p~~l~r~~~~~v~~~-~~~~~~Gk~~v~~~g~--------di~ii~~G~~ 249 (372)
++|+|+.|++.++++|++.+ +|+|||++|. ..+.++.+ .+.+++|+ +++++|. |++||++|++
T Consensus 521 ~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~----~~~~~~~~~~~~~~~G~-~vlr~g~~~~~~~~~dvtiia~G~~ 595 (700)
T 3rim_A 521 VRPADANETAYAWRTILARRNGSGPVGLILTRQ----GVPVLDGTDAEGVARGG-YVLSDAGGLQPGEEPDVILIATGSE 595 (700)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSS----EECCCTTCCHHHHHHSC-EEEECCSCCCTTCCCSEEEEECGGG
T ss_pred EeCCCHHHHHHHHHHHHHccCCCCCEEEEeccc----cCCCcCcccccccCCCc-EEEecCCccccCCCCCEEEEEechH
Confidence 99999999999999999985 5999977764 44445444 36688898 6889886 9999999999
Q ss_pred HHHHHHHHHHHHhcCCceeEEeecccCCCCHH--HHHHHH-hc-CCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcE
Q 017410 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKE--TVEASV-RK-TGRLLISHEAPVTGGFGAEISASILERCFLRLEAPV 325 (372)
Q Consensus 250 ~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~--~l~~~~-~~-~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v 325 (372)
+..|++|++.|+++||+++|||++|++|||.+ .+.+.+ ++ ++++|+||++...| |.+ ++.+.+
T Consensus 596 v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G-~~~----~~~~~~-------- 662 (700)
T 3rim_A 596 VQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQC-WHQ----LVGDTG-------- 662 (700)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGG-GHH----HHCTTC--------
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchh-HHH----HHhcCC--------
Confidence 99999999999999999999999999999984 455544 43 67899999998654 433 333332
Q ss_pred EEEec----cCCCcccccccCCCCcHHHHHHHHh
Q 017410 326 ARVCG----LDTPFPLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 326 ~~ig~----~~~~~~~lle~~~l~~~~~~~~i~~ 355 (372)
..+|. ...+.+.++++|||++++|++++++
T Consensus 663 ~~igid~Fg~sg~~~~l~~~~Glt~e~I~~~i~~ 696 (700)
T 3rim_A 663 EIVSIEHYGESADHKTLFREYGFTAEAVAAAAER 696 (700)
T ss_dssp EEECCCSCCCSSCHHHHHHHTTCSHHHHHHHHHH
T ss_pred cEEccCcCcCcCCHHHHHHHhCcCHHHHHHHHHH
Confidence 34554 2234557899999999999998875
No 14
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=9.7e-48 Score=404.76 Aligned_cols=292 Identities=13% Similarity=0.136 Sum_probs=237.7
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCc-cccchhHH-HHhCCCceEecchhHHHHHHHHHHHHhc-CCe
Q 017410 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGV-FRCTTGLA-DRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNR 111 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~-~~~~~~~~-~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~ 111 (372)
.++++++|+|++++|.++++.+|+++++++|++ +++. |+.+++|. ++| |+||||+||+|++|+++|+|||+. |+|
T Consensus 351 ~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~v~~a~GlA~~gG~~ 429 (663)
T 3kom_A 351 NPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQE-GANYLSYGVREFGMAAIMNGLSLYGGIK 429 (663)
T ss_dssp SCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCST-TCCEEECCSCHHHHHHHHHHHHHHSSCE
T ss_pred cCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccC-CCCeEecCccHHHHHHHHHHHHHcCCCE
Confidence 467789999999999999999999999999997 3322 44556784 999 999999999999999999999999 999
Q ss_pred eEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCCHH
Q 017410 112 AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPR 188 (372)
Q Consensus 112 pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~ 188 (372)
||+++ |++|++++++||++ +|+++ + |++++ ++.|. .|.+|+||+ ++|+++||+||||+|++|+|+.
T Consensus 430 P~~~t-f~~F~~~~~~~ir~-~a~~~--------l-pvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~ 498 (663)
T 3kom_A 430 PYGGT-FLVFSDYSRNAIRM-SALMK--------Q-PVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTI 498 (663)
T ss_dssp EEEEE-EGGGHHHHHHHHHH-HHHTT--------C-CCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHH
T ss_pred EEEEe-hHHHHHHHHHHHHH-HHhcC--------C-CEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHH
Confidence 99994 99999999999985 67554 6 88887 45554 677887775 7899999999999999999999
Q ss_pred HHHHHHHHhHh-CCCcEEEEecccccccccccCCCCC---ccccCCceEEeee--CCcEEEEEeChhHHHHHHHHHHHHh
Q 017410 189 QAKGLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDD---YMLPLSEAEVIRE--GSDITLVGWGAQLSIMEQACLDAEK 262 (372)
Q Consensus 189 e~~~~l~~a~~-~~~Pv~ir~p~~l~r~~~~~v~~~~---~~~~~Gk~~v~~~--g~di~ii~~G~~~~~a~~Aa~~L~~ 262 (372)
|++.++++|++ .++|+|||++| ...+.++..+ +.++.|+ +++++ |.|++||++|+++..|++|++.|++
T Consensus 499 e~~~~l~~A~~~~~~Pv~ir~~r----~~~p~~~~~~~~~~~~~~G~-~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~ 573 (663)
T 3kom_A 499 ETMIAWKEAVKSKDTPSVMVLTR----QNLMPVVQTQHQVANIARGG-YLVKDNPDAKLTIVATGSEVELAVKVANEFEK 573 (663)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCS----SEECCCCCCHHHHHHHTTTC-EEEECCTTCSCEEEECTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEccC----ccCCCcCccccchhcccCce-EEEEecCCCCEEEEEecHHHHHHHHHHHHHHh
Confidence 99999999999 69999997765 3444444333 3466775 56777 7899999999999999999999999
Q ss_pred cCCceeEEeecccCCCCHHH--HHHHHhcC-CeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEec----cCCCc
Q 017410 263 EGISCELIDLKTLIPWDKET--VEASVRKT-GRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCG----LDTPF 335 (372)
Q Consensus 263 ~Gi~v~vi~~~~i~P~d~~~--l~~~~~~~-~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~----~~~~~ 335 (372)
+||+++|||++|++|||.+. +.+.+.++ ..++++|++. ..||.+.+. + + .-..+|. ...+.
T Consensus 574 ~Gi~~~Vi~~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~-~~g~~~~~g------G---~--~~~~igid~Fg~sg~~ 641 (663)
T 3kom_A 574 KGIKLNVASIPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQ-PDMWYKYMP------K---A--GGEVKGIYSFGESAPA 641 (663)
T ss_dssp TTCCCEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSC-CGGGGGGCC------T---T--CEEEECCCSCCCSSCH
T ss_pred cCCCeEEEEcCcCCcccccHHHHHHHhcCCCCeEEEEecCC-cccHHHHhc------c---c--CCcEEEecCCcCCCCH
Confidence 99999999999999999976 55555444 5688899985 566665431 1 1 1234544 22355
Q ss_pred ccccccCCCCcHHHHHHHHhC
Q 017410 336 PLVFEPFYMPTKNKASCLESF 356 (372)
Q Consensus 336 ~~lle~~~l~~~~~~~~i~~~ 356 (372)
+.++++|||++++|+++++++
T Consensus 642 ~~l~~~~Glt~e~I~~~~~~~ 662 (663)
T 3kom_A 642 EDLFKRFGFTVENISNIVAKY 662 (663)
T ss_dssp HHHHHHHTCSHHHHHHHHTTT
T ss_pred HHHHHHHCcCHHHHHHHHHhh
Confidence 678999999999999998763
No 15
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=8.3e-48 Score=407.40 Aligned_cols=292 Identities=15% Similarity=0.179 Sum_probs=238.7
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCcc-ccchhHHH------HhCCCceEecchhHHHHHHHHHHHHh
Q 017410 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVF-RCTTGLAD------RFGKSRVFNTPLCEQGIVGFAIGLAA 107 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~-~~~~~~~~------~~~p~r~i~~GIaE~~~vg~A~GlA~ 107 (372)
.++++++|+|++++|.++++++|+++++++|++ +++++ +.+..|++ +| |+||||+||+|++|+++|+|||+
T Consensus 352 ~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~-p~R~~d~gIaE~~~vg~a~GlA~ 430 (680)
T 1gpu_A 352 KDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNY-SGRYIRYGIREHAMGAIMNGISA 430 (680)
T ss_dssp TSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEET-TCCEEECCSCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCC-CCceecCCccHHHHHHHHHHHHh
Confidence 467789999999999999999999999999997 22222 12346877 99 99999999999999999999999
Q ss_pred cC-Ce-eEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEE
Q 017410 108 MG-NR-AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVV 182 (372)
Q Consensus 108 ~G-~~-pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~ 182 (372)
.| ++ ||++ +|++|+.++++|||+ +|+++ + |++++ ++.|. .|++|+||+ .+|+++||+||||+|+
T Consensus 431 ~Gg~~~P~~~-~f~~F~~~~~~air~-~a~~~--------l-pvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~ 499 (680)
T 1gpu_A 431 FGANYKPYGG-TFLNFVSYAAGAVRL-SALSG--------H-PVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVW 499 (680)
T ss_dssp HCTTCEEEEE-EEHHHHGGGHHHHHH-HHHHT--------C-CCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEE
T ss_pred cCCCceEEEe-ehHHHHHHHHHHHHH-HHhcC--------C-CEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEE
Confidence 98 99 9998 699999999999987 67654 6 88887 45554 577888885 6899999999999999
Q ss_pred eeCCHHHHHHHHHHhHhC-CCcEEEEecccccccccccCCCCCcc-ccCCceEEeeeC--CcEEEEEeChhHHHHHHHHH
Q 017410 183 IPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDYM-LPLSEAEVIREG--SDITLVGWGAQLSIMEQACL 258 (372)
Q Consensus 183 ~Psd~~e~~~~l~~a~~~-~~Pv~ir~p~~l~r~~~~~v~~~~~~-~~~Gk~~v~~~g--~di~ii~~G~~~~~a~~Aa~ 258 (372)
+|+|+.|++.++++|++. ++|+|||++|. ..+.++.+++. +++|+ +++++| .|++||++|+++..|++|++
T Consensus 500 ~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~----~~~~~~~~~~~~~~~G~-~vl~~g~~~dvtiva~G~~v~~al~Aa~ 574 (680)
T 1gpu_A 500 RPADGNEVSAAYKNSLESKHTPSIIALSRQ----NLPQLEGSSIESASKGG-YVLQDVANPDIILVATGSEVSLSVEAAK 574 (680)
T ss_dssp CCCSHHHHHHHHHHHHHCSSCCEEEECCSS----CBCCCTTCCHHHHTTSC-EEEECCSSCSEEEEECTHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHhCCCcEEEEecCC----CCCCCCCcchhhccCCC-EEEecCCCCCEEEEEEcHHHHHHHHHHH
Confidence 999999999999999997 99999977764 44445444444 77885 788887 89999999999999999999
Q ss_pred HHHhcCCceeEEeecccCCCCHHH--HHHHHhcCC-eEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCc
Q 017410 259 DAEKEGISCELIDLKTLIPWDKET--VEASVRKTG-RLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF 335 (372)
Q Consensus 259 ~L~~~Gi~v~vi~~~~i~P~d~~~--l~~~~~~~~-~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~ 335 (372)
.|+++||+++|||++|++|||.+. +.+.+.++. ++|++|++.. +||++++. ++..+..+ +...+.
T Consensus 575 ~L~~~Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~v~vE~~~~-~g~~~~v~----------~~~gv~~f-~~~g~~ 642 (680)
T 1gpu_A 575 TLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLAT-TCWGKYAH----------QSFGIDRF-GASGKA 642 (680)
T ss_dssp HHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCS-TTGGGTCS----------EEECCCSC-CCCSCH
T ss_pred HHHhcCCCEEEEEcCCCCcchhhhHHHHHHHhccCCceEEEeCCcc-ccHHHhcC----------cceeeCcC-CCCCCH
Confidence 999999999999999999999885 555565553 5599999975 88876541 01011122 123455
Q ss_pred ccccccCCCCcHHHHHHHHhC
Q 017410 336 PLVFEPFYMPTKNKASCLESF 356 (372)
Q Consensus 336 ~~lle~~~l~~~~~~~~i~~~ 356 (372)
+.++++||+++++|++++++.
T Consensus 643 ~~l~~~~gl~~~~I~~~i~~~ 663 (680)
T 1gpu_A 643 PEVFKFFGFTPEGVAERAQKT 663 (680)
T ss_dssp HHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHH
Confidence 678999999999999988763
No 16
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=7.6e-48 Score=407.18 Aligned_cols=291 Identities=13% Similarity=0.128 Sum_probs=240.5
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCcc-ccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCee
Q 017410 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVF-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRA 112 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~-~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~p 112 (372)
.++++++|++++++|.++++.+|+++++++|++ +++++ +.+..|+++| |+||||+||+|++|+++|+|||+. |++|
T Consensus 351 ~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~-p~R~id~GIaE~~~v~~a~GlA~~gG~~P 429 (669)
T 2r8o_A 351 NPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGISLHGGFLP 429 (669)
T ss_dssp SCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred CCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccC-CCCeeecchhHHHHHHHHHHHHHcCCCeE
Confidence 466789999999999999999999999999997 22222 3456899999 999999999999999999999999 8999
Q ss_pred EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEe-CCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHH
Q 017410 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQ 189 (372)
Q Consensus 113 i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~-~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e 189 (372)
|+. +|++|+.++++||++ +|+++ + |++++. +.|. .|++|+||+ .+|+++||++|||+|++|+|++|
T Consensus 430 ~~~-tf~~F~~~~~~~ir~-~a~~~--------l-pvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E 498 (669)
T 2r8o_A 430 YTS-TFLMFVEYARNAVRM-AALMK--------Q-RQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVE 498 (669)
T ss_dssp EEE-EEGGGGGTTHHHHHH-HHHTT--------C-CCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHH
T ss_pred EEe-ehHHHHHHHHHHHHH-HHhcC--------C-CEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHH
Confidence 998 699999999999997 67543 5 888874 4453 577888886 68999999999999999999999
Q ss_pred HHHHHHHhHhC-CCcEEEEecccccccccccCCCCCc---cccCCceEEeee--C-CcEEEEEeChhHHHHHHHHHHHHh
Q 017410 190 AKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDY---MLPLSEAEVIRE--G-SDITLVGWGAQLSIMEQACLDAEK 262 (372)
Q Consensus 190 ~~~~l~~a~~~-~~Pv~ir~p~~l~r~~~~~v~~~~~---~~~~Gk~~v~~~--g-~di~ii~~G~~~~~a~~Aa~~L~~ 262 (372)
++.++++|++. ++|+|||++|..+ +.++..++ .+++|+ +++++ | .|++||++|+++..|++|++.|++
T Consensus 499 ~~~~l~~a~~~~~~Pv~i~~~r~~~----~~~~~~~~~~~~~~~G~-~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~ 573 (669)
T 2r8o_A 499 SAVAWKYGVERQDGPTALILSRQNL----AQQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTA 573 (669)
T ss_dssp HHHHHHHHHHCSSSCEEEECCSSEE----CCCCCCHHHHHHGGGSC-EEEECCSSSCSEEEEECGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCCC----CCCCCccchhhhccCCC-EEEeccCCCCCEEEEEECHHHHHHHHHHHHHHh
Confidence 99999999997 9999998887543 33443332 267785 67887 7 899999999999999999999999
Q ss_pred cCCceeEEeecccCCCCHHH---HHHHHhcC-CeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEecc----CCC
Q 017410 263 EGISCELIDLKTLIPWDKET---VEASVRKT-GRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGL----DTP 334 (372)
Q Consensus 263 ~Gi~v~vi~~~~i~P~d~~~---l~~~~~~~-~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~----~~~ 334 (372)
+||+++|||++|++|||.+. +.+.++++ +++|++|++.. +||++.+ .+++ ..+|.. ..+
T Consensus 574 ~Gi~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~g~~~~~----~~~~--------~~ig~d~fg~sg~ 640 (669)
T 2r8o_A 574 EGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIA-DYWYKYV----GLNG--------AIVGMTTFGESAP 640 (669)
T ss_dssp HTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEG-GGGHHHH----TTSS--------EEEEECSCCCSSC
T ss_pred cCCCeEEEEeccCCccccchHHHHHHhccccCceEEEEeCCch-hhHHHHh----cCCC--------eEEEcCCCCCcCC
Confidence 99999999999999999874 55555553 68999999975 7887643 3322 234432 234
Q ss_pred cccccccCCCCcHHHHHHHHhC
Q 017410 335 FPLVFEPFYMPTKNKASCLESF 356 (372)
Q Consensus 335 ~~~lle~~~l~~~~~~~~i~~~ 356 (372)
.++++++|||++++|+++++++
T Consensus 641 ~~~l~~~~Gl~~~~I~~~~~~~ 662 (669)
T 2r8o_A 641 AELLFEEFGFTVDNVVAKAKEL 662 (669)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 5578999999999999998764
No 17
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=8.5e-47 Score=399.37 Aligned_cols=290 Identities=14% Similarity=0.166 Sum_probs=240.2
Q ss_pred CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCcc-ccchhHHH-HhCCCceEecchhHHHHHHHHHHHHhcC--
Q 017410 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVF-RCTTGLAD-RFGKSRVFNTPLCEQGIVGFAIGLAAMG-- 109 (372)
Q Consensus 35 ~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~-~~~~~~~~-~~~p~r~i~~GIaE~~~vg~A~GlA~~G-- 109 (372)
..++++++|++++++|.++++++|+++++++|++ ++++. +.+..|++ +| |+||||+||+|++|+++|+|||+.|
T Consensus 361 ~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~-~~R~id~gIaE~~~v~~a~GlA~~G~~ 439 (675)
T 1itz_A 361 PESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTA-EERNVRFGVREHGMGAICNGIALHSPG 439 (675)
T ss_dssp TTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCT-TCCBCCCCSCHHHHHHHHHHHHTTCTT
T ss_pred cCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCC-CCCeEeecccHHHHHHHHHHHHhcCCC
Confidence 4567789999999999999999999999999997 22111 12335886 99 9999999999999999999999999
Q ss_pred CeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEe-CCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCC
Q 017410 110 NRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRS 186 (372)
Q Consensus 110 ~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~-~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd 186 (372)
+|||++ +|++|+.++++||++ +|+++ + |++++. +.|. .|++|+||+ .+|+++||+||||+|++|+|
T Consensus 440 ~~P~~~-t~~~F~~~~~~~ir~-~a~~~--------l-pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad 508 (675)
T 1itz_A 440 FVPYCA-TFFVFTDYMRGAMRI-SALSE--------A-GVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPAD 508 (675)
T ss_dssp CEEEEE-EEGGGHHHHHHHHHH-HHHHT--------C-CCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCCS
T ss_pred CEEEEE-EHHHHHHHHHHHHHH-HHhcC--------C-CEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEECCC
Confidence 999999 599999999999986 67654 6 888884 5554 577888885 68999999999999999999
Q ss_pred HHHHHHHHHHhHhC-CCcEEEEecccccccccccCCCCCc-cccCCceEEeee---C--CcEEEEEeChhHHHHHHHHHH
Q 017410 187 PRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDY-MLPLSEAEVIRE---G--SDITLVGWGAQLSIMEQACLD 259 (372)
Q Consensus 187 ~~e~~~~l~~a~~~-~~Pv~ir~p~~l~r~~~~~v~~~~~-~~~~Gk~~v~~~---g--~di~ii~~G~~~~~a~~Aa~~ 259 (372)
+.|++.++++|++. ++|+|||++|. ..+.++.+++ .+++| .+++++ | .|++||++|+++..|++|++.
T Consensus 509 ~~e~~~~l~~a~~~~~~Pv~i~~~r~----~~p~~~~~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~al~Aa~~ 583 (675)
T 1itz_A 509 GNETAGAYKVAVLNRKRPSILALSRQ----KLPHLPGTSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEIAAKAADE 583 (675)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEECSS----CBCCCTTCCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEEecCC----CCCCCCCccccccccC-CEEEecccCCCCCCEEEEEECHHHHHHHHHHHH
Confidence 99999999999997 99999977763 4444544444 47888 577887 7 899999999999999999999
Q ss_pred HHhcCCceeEEeecccCCCCHHH--HHHHHhcC--CeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCC--
Q 017410 260 AEKEGISCELIDLKTLIPWDKET--VEASVRKT--GRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT-- 333 (372)
Q Consensus 260 L~~~Gi~v~vi~~~~i~P~d~~~--l~~~~~~~--~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~-- 333 (372)
|+++||+++|||++|++|||.+. +.+.+.++ +++|++|++.. +||++.+ ..++.++|. |.
T Consensus 584 L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~G~~~~~------------~~~~~~ig~-d~fg 649 (675)
T 1itz_A 584 LRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGST-LGWQKYV------------GAQGKAIGI-DKFG 649 (675)
T ss_dssp HHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCC-TTTHHHH------------CSSCEEECC-CSCC
T ss_pred HHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCcc-ccHHHhc------------CCCceEEEe-CCCC
Confidence 99999999999999999999875 44445554 68999999985 8888743 123467776 54
Q ss_pred ---CcccccccCCCCcHHHHHHHHh
Q 017410 334 ---PFPLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 334 ---~~~~lle~~~l~~~~~~~~i~~ 355 (372)
+.+.++++||+++++|++++++
T Consensus 650 ~sg~~~~l~~~~gl~~~~I~~~i~~ 674 (675)
T 1itz_A 650 ASAPAGTIYKEYGITVESIIAAAKS 674 (675)
T ss_dssp CSSCHHHHHHHHTCSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 2346899999999999988864
No 18
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=9.8e-47 Score=397.59 Aligned_cols=286 Identities=15% Similarity=0.126 Sum_probs=237.6
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccc-cchhHHH-HhCCCceEecchhHHHHHHHHHHHHhcC-Cee
Q 017410 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFR-CTTGLAD-RFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRA 112 (372)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~-~~~~~~~-~~~p~r~i~~GIaE~~~vg~A~GlA~~G-~~p 112 (372)
++++++|++++++|.++++++|+++++++|++ +++++. .+++|++ +| |+||||+||+|++|+++|+|||+.| +||
T Consensus 346 ~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P 424 (651)
T 2e6k_A 346 DKPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANP-LGRYLHFGVREHAMGAILNGLNLHGGYRA 424 (651)
T ss_dssp CSCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred CccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCC-CCceEecCcCHHHHHHHHHHHHHcCCCEE
Confidence 56789999999999999999999999999997 222211 3567887 99 9999999999999999999999998 999
Q ss_pred EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHH
Q 017410 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQ 189 (372)
Q Consensus 113 i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e 189 (372)
|++ +|+.|+.++++||+. .|+++ + |++++ ++.|. .|++|+||+ .+|+++||++|||+|++|+|++|
T Consensus 425 ~~~-t~~~F~~~~~~air~-~a~~~--------l-pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E 493 (651)
T 2e6k_A 425 YGG-TFLVFSDYMRPAIRL-AALMG--------V-PTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYE 493 (651)
T ss_dssp EEE-EEGGGGGGSHHHHHH-HHHHT--------C-CCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHH
T ss_pred EEE-eHHHHHHHHHHHHHH-HHhcC--------C-CEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHH
Confidence 999 599999899999875 67654 5 88888 56554 577888885 58999999999999999999999
Q ss_pred HHHHHHHhHhC-CCcEEEEecccccccccccCCCCCc-cccCCceEEeeeC--CcEEEEEeChhHHHHHHHHHHHHhcCC
Q 017410 190 AKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDY-MLPLSEAEVIREG--SDITLVGWGAQLSIMEQACLDAEKEGI 265 (372)
Q Consensus 190 ~~~~l~~a~~~-~~Pv~ir~p~~l~r~~~~~v~~~~~-~~~~Gk~~v~~~g--~di~ii~~G~~~~~a~~Aa~~L~~~Gi 265 (372)
++.++++|++. ++|+|||++|.. .+.++.+++ .++.| .++++++ .|++||++|+++..|++|++.|+++||
T Consensus 494 ~~~~l~~A~~~~~~Pv~i~~~r~~----~~~~~~~~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~Gi 568 (651)
T 2e6k_A 494 TFYAWLVALRRKEGPTALVLTRQA----VPLLSPEKARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGV 568 (651)
T ss_dssp HHHHHHHHHHCCSSCEEEECCSSC----BCCCCHHHHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCC----CCCCCcchhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhcCC
Confidence 99999999997 899999887753 233433222 36677 4678887 899999999999999999999999999
Q ss_pred ceeEEeecccCCCCHHH---HHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCC-----ccc
Q 017410 266 SCELIDLKTLIPWDKET---VEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTP-----FPL 337 (372)
Q Consensus 266 ~v~vi~~~~i~P~d~~~---l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~-----~~~ 337 (372)
+++|||++|++|||.+. +.+.+++++++|++|++.. +||++++ + .++|. |.+ .+.
T Consensus 569 ~~~Vv~~~~~~p~d~~~~~~~~~v~~~~~~vv~vE~~~~-~G~~~~v--------------~-~~ig~-d~f~~sg~~~~ 631 (651)
T 2e6k_A 569 RVRVVSLPSFELFAAQPEAYRKEVLPPGLPVVAVEAGAS-LGWERYA--------------H-KVVAL-DRFGASAPYPE 631 (651)
T ss_dssp CEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC--------------S-EEECC-CSCCCSCCTTH
T ss_pred cEEEEecCcCCccccccHHHHHHHhCcCCeEEEEeCCcc-CchHHhC--------------C-CEEEe-CCCCCCCCHHH
Confidence 99999999999999985 5555555578999999975 8887543 2 56766 543 346
Q ss_pred ccccCCCCcHHHHHHHHhC
Q 017410 338 VFEPFYMPTKNKASCLESF 356 (372)
Q Consensus 338 lle~~~l~~~~~~~~i~~~ 356 (372)
++++||+++++|++++++.
T Consensus 632 l~~~~gl~~~~I~~~i~~~ 650 (651)
T 2e6k_A 632 VYERLGFTPERVAEAFLSL 650 (651)
T ss_dssp HHHHTTCCHHHHHHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHHh
Confidence 8999999999999988763
No 19
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=2e-46 Score=405.32 Aligned_cols=291 Identities=20% Similarity=0.335 Sum_probs=244.3
Q ss_pred CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCC---------------CccccchhHHHHhCCCceEecchhHHHHH
Q 017410 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFG---------------GVFRCTTGLADRFGKSRVFNTPLCEQGIV 99 (372)
Q Consensus 35 ~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~g---------------g~~~~~~~~~~~~~p~r~i~~GIaE~~~v 99 (372)
.+++.++|..+++.+|.+++++|++|+++++|++.| +.|..+..|+++|||+||+|+||+|++++
T Consensus 586 ~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~v 665 (933)
T 2jgd_A 586 AGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVL 665 (933)
T ss_dssp TTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHH
Confidence 456678999999999999999999999999999853 34456888999999999999999999999
Q ss_pred HHHHHHHhcCCe--eEEEecccccHH---HHHHHHHHHH-HhhhhhcCCCcccccEEEEeCCCCCCCCCCCCChhHHHHH
Q 017410 100 GFAIGLAAMGNR--AIAEIQFADYIF---PAFDQIVNEA-AKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFF 173 (372)
Q Consensus 100 g~A~GlA~~G~~--pi~~i~~~~F~~---ra~dqi~~~~-a~~~~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~d~a~l 173 (372)
|+|+|+|++|.+ |+|+++|++|++ |++|||++++ ++ |.. +. |||++.+.|..|.++.||++.+++++
T Consensus 666 g~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak--~~~----~~-~vv~~l~~G~~g~G~~Hss~~~E~~l 738 (933)
T 2jgd_A 666 AFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQK--WGR----MC-GLVMLLPHGYEGQGPEHSSARLERYL 738 (933)
T ss_dssp HHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHH--HCC----CC-CCEEEEECCCSSSCTTSSCCCHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHH--Hcc----CC-CEEEEEeCCCCCCCcccccchHHHHH
Confidence 999999999998 999878999985 9999999888 65 321 35 88988776766654555555566665
Q ss_pred --cCCCCcEEEeeCCHHHHHHHHHHhH-hC-CCcEEEEecccccccccc-----cCCCCCccccCCceEEeeeCCcE--E
Q 017410 174 --CHVPGLKVVIPRSPRQAKGLLLSCI-RD-PNPVVFFEPKWLYRLSVE-----EVPEDDYMLPLSEAEVIREGSDI--T 242 (372)
Q Consensus 174 --~~iP~l~V~~Psd~~e~~~~l~~a~-~~-~~Pv~ir~p~~l~r~~~~-----~v~~~~~~~~~Gk~~v~~~g~di--~ 242 (372)
+++|||+|++|+|+.|++.++++++ +. ++|++||+||+++|.+.. +++...+.+++|++.+++ |.|+ +
T Consensus 739 ~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~v 817 (933)
T 2jgd_A 739 QLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRV 817 (933)
T ss_dssp HTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEE
T ss_pred HHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEE
Confidence 5679999999999999999999985 64 899999999999986431 122345677889988777 8888 7
Q ss_pred EEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC---eEEEEcCCCCCCcHHHHHHHHHHHhccc
Q 017410 243 LVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG---RLLISHEAPVTGGFGAEISASILERCFL 319 (372)
Q Consensus 243 ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~---~vivvEe~~~~GGlg~~i~~~l~~~~~~ 319 (372)
|+|+|.++..+++|++.|+++ +++|||+++|+|||.+.|.+++++++ +|||+||+...||+|+.|+..+.+..+.
T Consensus 818 I~~~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pld~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~ 895 (933)
T 2jgd_A 818 VMCSGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF 895 (933)
T ss_dssp EEECTTHHHHHHHHHHHTTCC--SEEEEEECEEESCCHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT
T ss_pred EEEchHHHHHHHHHHHHcccC--CeEEEEeeccCCCCHHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc
Confidence 888888888788887888755 89999999999999999999999998 8999999999999999999999887521
Q ss_pred cCCCcEEEEeccCCCccc
Q 017410 320 RLEAPVARVCGLDTPFPL 337 (372)
Q Consensus 320 ~l~~~v~~ig~~~~~~~~ 337 (372)
..++.++|.+|.+.|.
T Consensus 896 --~~~v~~vg~~d~~~pa 911 (933)
T 2jgd_A 896 --GASLRYAGRPASASPA 911 (933)
T ss_dssp --TCEEEEEEECCCSSSS
T ss_pred --CCceEEEecCCcCCCC
Confidence 3689999999987764
No 20
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=2.2e-46 Score=395.96 Aligned_cols=284 Identities=14% Similarity=0.138 Sum_probs=239.7
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCccc-c--chhHHH-HhCCCceEecchhHHHHHHHHHHHHhc-CC
Q 017410 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFR-C--TTGLAD-RFGKSRVFNTPLCEQGIVGFAIGLAAM-GN 110 (372)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~-~gg~~~-~--~~~~~~-~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~ 110 (372)
++++++|+|++++|.++++++|+++++++|++ +++.+. . +..|++ +| |+||||+||+|++|+++|+|||+. |+
T Consensus 349 ~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~-~~R~id~GIaE~~~~~~a~GlA~~GG~ 427 (673)
T 1r9j_A 349 SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSK-EGRYIRFGVREHAMCAILNGLDAHDGI 427 (673)
T ss_dssp CSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSC
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCC-CCCeEecCccHHHHHHHHHHHHhcCCC
Confidence 56889999999999999999999999999997 222221 0 234887 99 999999999999999999999999 69
Q ss_pred eeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCC-hhHHHHHcCCCCcEEEeeCCH
Q 017410 111 RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRSP 187 (372)
Q Consensus 111 ~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~ 187 (372)
+||++ +|++|+.++++||++ +|+++ + |++++ ++.|. .|++|+||+ .+|+++|++|||++|+.|+|+
T Consensus 428 ~P~~~-~~~~F~~~~~~~ir~-~a~~~--------~-pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~ 496 (673)
T 1r9j_A 428 IPFGG-TFLNFIGYALGAVRL-AAISH--------H-RVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQ 496 (673)
T ss_dssp EEEEE-EEGGGGGGGHHHHHH-HHHHT--------C-CCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSH
T ss_pred EEEEE-ehHHHHHHHHHHHHH-HHhcC--------C-CEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCH
Confidence 99999 599999999999987 67654 5 88887 45554 577888885 689999999999999999999
Q ss_pred HHHHHHHHHhHhC-CCcEEEEecccccccccccCCCCCc-cccCCceEEeeeC--CcEEEEEeChhHHHHHHHHHHHHhc
Q 017410 188 RQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDY-MLPLSEAEVIREG--SDITLVGWGAQLSIMEQACLDAEKE 263 (372)
Q Consensus 188 ~e~~~~l~~a~~~-~~Pv~ir~p~~l~r~~~~~v~~~~~-~~~~Gk~~v~~~g--~di~ii~~G~~~~~a~~Aa~~L~~~ 263 (372)
+|++.++++|++. ++|+|||++|. +.+.++.+.+ .+++| .+++++| .|++||++|+++..|++|++.|+++
T Consensus 497 ~e~~~~l~~a~~~~~~Pv~i~~~r~----~~~~~~~~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L~~~ 571 (673)
T 1r9j_A 497 TETSGAWAVALSSIHTPTVLCLSRQ----NTEPQSGSSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE 571 (673)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECCSS----EECCCTTCCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCC----CCCCCCCcccccccCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHHHhc
Confidence 9999999999997 99999977764 3344444444 47788 5788888 8999999999999999999999999
Q ss_pred CCceeEEeecccCCCCHHH---HHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCC-----Cc
Q 017410 264 GISCELIDLKTLIPWDKET---VEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT-----PF 335 (372)
Q Consensus 264 Gi~v~vi~~~~i~P~d~~~---l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~-----~~ 335 (372)
|+++|||++|++|||.+. +.+++++++++|++|++.. +||++.+ ++. +|. |. +.
T Consensus 572 -i~~~Vv~~~sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~-~g~~~~v--------------~~~-~g~-d~f~~sg~~ 633 (673)
T 1r9j_A 572 -LRVRVVSMPCQELFDAQPDTYRQAVLPAGVPVVSVEAYVS-FGWEKYS--------------HAH-VGM-SGFGASAPA 633 (673)
T ss_dssp -CCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC--------------SEE-ESC-SSCCCSSCH
T ss_pred -CCEEEEeCCCCchhhcccHHHHHHHhccCCeEEEEeCCCc-cchHHhc--------------Cce-EEe-ccCCCCCCH
Confidence 999999999999999985 8888988889999999975 8886643 122 655 43 34
Q ss_pred ccccccCCCCcHHHHHHHHh
Q 017410 336 PLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 336 ~~lle~~~l~~~~~~~~i~~ 355 (372)
+.++++||+++++|++++++
T Consensus 634 ~~L~~~~g~~~~~I~~~i~~ 653 (673)
T 1r9j_A 634 GVLYKKFGITVEEVVRTGRE 653 (673)
T ss_dssp HHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHH
Confidence 46899999999999998865
No 21
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=3.5e-46 Score=401.23 Aligned_cols=318 Identities=18% Similarity=0.201 Sum_probs=246.4
Q ss_pred hhhhcccCCCccccccccccccCCCcc--CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCC---------------C
Q 017410 8 FVGSLSRRNLSTACANKQLIQQHDGGV--GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGF---------------G 70 (372)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~---------------g 70 (372)
.+..+++.|++.-.|++..+....+.- .. +.++|..+-..+..+++++|++|+++++|++. |
T Consensus 484 ~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~-~~i~~a~~e~la~~~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g 562 (868)
T 2yic_A 484 IGDAHLALPEGFTVHPRVRPVLEKRREMAYE-GRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTG 562 (868)
T ss_dssp HHHHTTCCCTTCCCCTTTHHHHHHHHHHHHH-CCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTC
T ss_pred HHHhhccCCcccccchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCCCEEEEcCcCCccchhhcchhccccCCC
Confidence 333444455554444443332222210 11 23454444444455889999999999999984 5
Q ss_pred CccccchhH------HHHhCCCceEecchhHHHHHHHHHHHHhcC--CeeEEEecccccHHHH---HHHHHHHHHhhhhh
Q 017410 71 GVFRCTTGL------ADRFGKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYIFPA---FDQIVNEAAKFRYR 139 (372)
Q Consensus 71 g~~~~~~~~------~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G--~~pi~~i~~~~F~~ra---~dqi~~~~a~~~~~ 139 (372)
+.|..++.| .++++|+||+|+||+|++++|+|+|+|+.| .+|+++++|++|+++| +|||++++. .+|.
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~-~k~~ 641 (868)
T 2yic_A 563 EEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGE-AKWG 641 (868)
T ss_dssp CEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHH-HHHC
T ss_pred ceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHHHHhhHHHHHHHHHHHHH-HHhC
Confidence 667778899 775669999999999999999999999999 5678888999999887 999998863 3342
Q ss_pred cCCCcccccEEEEeCCCCCCCCCCCCChh-HHHHH--cCCCCcEEEeeCCHHHHHHHHHHhHhC--CCcEEEEecccccc
Q 017410 140 SGNQFNCGGLTVRAPYGAVGHGGHYHSQS-PEAFF--CHVPGLKVVIPRSPRQAKGLLLSCIRD--PNPVVFFEPKWLYR 214 (372)
Q Consensus 140 ~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~-d~a~l--~~iP~l~V~~Psd~~e~~~~l~~a~~~--~~Pv~ir~p~~l~r 214 (372)
. ++ |||++.+.|..| +|++||+. +++++ +++|||+|++|+|+.|++.+++.++.. ++|+||++||+|+|
T Consensus 642 ~----~~-~vvi~~p~G~~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR 715 (868)
T 2yic_A 642 Q----LS-DVVLLLPHGHEG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLR 715 (868)
T ss_dssp C----CC-CCEEEEECCCSS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGG
T ss_pred C----CC-CEEEEecCCCCC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhC
Confidence 2 46 999987756566 78888764 55555 999999999999999999999998875 49999999999999
Q ss_pred cccccCC-----CCCccccCCceEE---eeeCCcE--EEEEeChhHHHHHHHHHHHHhcC-CceeEEeecccCCCCHHHH
Q 017410 215 LSVEEVP-----EDDYMLPLSEAEV---IREGSDI--TLVGWGAQLSIMEQACLDAEKEG-ISCELIDLKTLIPWDKETV 283 (372)
Q Consensus 215 ~~~~~v~-----~~~~~~~~Gk~~v---~~~g~di--~ii~~G~~~~~a~~Aa~~L~~~G-i~v~vi~~~~i~P~d~~~l 283 (372)
.+.+.-+ +..+..++|++.+ +++|+|+ +|||+|.+ ..++++++ +++| ++++|||+++|+|||.+.|
T Consensus 716 ~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i 792 (868)
T 2yic_A 716 NKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKENREDVAIVRIEQLAPLPRRRL 792 (868)
T ss_dssp CTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTH-HHHHHHHH--HHHTCTTEEEEEECEEESCCHHHH
T ss_pred CCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHH-HHHHHHHH--HhCCCCCEEEEEeeecCCCCHHHH
Confidence 8643111 1123337899887 7889999 99999999 56666655 6679 9999999999999999999
Q ss_pred HHHHhcCCe---EEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCccc
Q 017410 284 EASVRKTGR---LLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPL 337 (372)
Q Consensus 284 ~~~~~~~~~---vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~ 337 (372)
.++++++++ |||+||+...||+|++|+..+.+. +..++.|+.++|.++.+.|+
T Consensus 793 ~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~-~~~l~~~v~~vg~~d~~~p~ 848 (868)
T 2yic_A 793 AETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLKRISRRAMSAPS 848 (868)
T ss_dssp HHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-CHHHHTTCEEEEECCCSSSS
T ss_pred HHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHH-hhhcCCCeEEeccCCcCCCC
Confidence 999999987 899999999999999999999884 22235789999999988774
No 22
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.1e-45 Score=406.21 Aligned_cols=322 Identities=18% Similarity=0.215 Sum_probs=257.4
Q ss_pred hhhhhhhcccCCCccccccccccccCCCcc-CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCC--------------
Q 017410 5 LRRFVGSLSRRNLSTACANKQLIQQHDGGV-GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGF-------------- 69 (372)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~-------------- 69 (372)
|++.++.+++.|.+.-.||+..+....+.- .+++.++|..+-..+..+++++|++|+++++|++.
T Consensus 726 l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~ 805 (1113)
T 2xt6_A 726 LQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRK 805 (1113)
T ss_dssp HHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTT
T ss_pred HHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcccCCCccchhcchheeccc
Confidence 445555666667666666665544433311 01144677666666777889999999999999984
Q ss_pred -CCccccchhH------HHHhCCCceEecchhHHHHHHHHHHHHhcC--CeeEEEecccccHHHH---HHHHHHHHHhhh
Q 017410 70 -GGVFRCTTGL------ADRFGKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYIFPA---FDQIVNEAAKFR 137 (372)
Q Consensus 70 -gg~~~~~~~~------~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G--~~pi~~i~~~~F~~ra---~dqi~~~~a~~~ 137 (372)
|+.|..++.| .++++|+||+|+||+|++++|+|+|+|++| .+|+++++|++|++++ +|||++++. .+
T Consensus 806 ~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~-~k 884 (1113)
T 2xt6_A 806 TGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGE-AK 884 (1113)
T ss_dssp TCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHH-HH
T ss_pred CCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHHHHHH-HH
Confidence 4556778999 775669999999999999999999999999 6678888999999877 999998864 23
Q ss_pred hhcCCCcccccEEEEeCCCCCCCCCCCCChh-HHHHH--cCCCCcEEEeeCCHHHHHHHHHHhHhC--CCcEEEEecccc
Q 017410 138 YRSGNQFNCGGLTVRAPYGAVGHGGHYHSQS-PEAFF--CHVPGLKVVIPRSPRQAKGLLLSCIRD--PNPVVFFEPKWL 212 (372)
Q Consensus 138 ~~~~~~~~~~pvvi~~~~G~~g~~G~~Hs~~-d~a~l--~~iP~l~V~~Psd~~e~~~~l~~a~~~--~~Pv~ir~p~~l 212 (372)
|.. ++ |||++.+.|..| +|++||+. +++++ +++|||+|++|+|+.|++.+|+.++.. ++|+||++||+|
T Consensus 885 ~~~----~~-~vv~~lp~G~~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L 958 (1113)
T 2xt6_A 885 WGQ----LS-DVVLLLPHGHEG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSM 958 (1113)
T ss_dssp HCC----CC-CCEEEEECCCSS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHHSSCCCCEEEEECSGG
T ss_pred hCC----CC-CEEEEeCCCCCC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHhccCCCCEEEEechHH
Confidence 422 46 999987766665 78889875 77776 999999999999999999999998875 499999999999
Q ss_pred ccccccc--C---CCCCccccCCceEE---eeeCCcE--EEEEeChhHHHHHHHHHHHHhcC-CceeEEeecccCCCCHH
Q 017410 213 YRLSVEE--V---PEDDYMLPLSEAEV---IREGSDI--TLVGWGAQLSIMEQACLDAEKEG-ISCELIDLKTLIPWDKE 281 (372)
Q Consensus 213 ~r~~~~~--v---~~~~~~~~~Gk~~v---~~~g~di--~ii~~G~~~~~a~~Aa~~L~~~G-i~v~vi~~~~i~P~d~~ 281 (372)
+|.+.+. + .+..+..++|++.+ +++|+|+ +|||+|.+ ..++++++ +++| ++++|||+++|+|||.+
T Consensus 959 ~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~ 1035 (1113)
T 2xt6_A 959 LRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKENREDVAIVRIEQLAPLPRR 1035 (1113)
T ss_dssp GSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECSTH-HHHHHHHH--HHHTCTTEEEEEESEEESCCHH
T ss_pred hCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECHH-HHHHHHHH--HhCCCCCEEEEEeeeecCCCHH
Confidence 9986431 1 11134347899887 7889999 99999999 66666665 5679 99999999999999999
Q ss_pred HHHHHHhcCCe---EEEEcCCCCCCcHHHHHHHHHHHhccccCCCcEEEEeccCCCccc
Q 017410 282 TVEASVRKTGR---LLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPL 337 (372)
Q Consensus 282 ~l~~~~~~~~~---vivvEe~~~~GGlg~~i~~~l~~~~~~~l~~~v~~ig~~~~~~~~ 337 (372)
.|.++++++++ +||+||+...||+|++|+..+.+. +..++.|+.++|.++.+.|+
T Consensus 1036 ~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~-~~~l~~~~~~vg~~d~~~p~ 1093 (1113)
T 2xt6_A 1036 RLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLKRISRRAMSAPS 1093 (1113)
T ss_dssp HHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-SHHHHTTCEEEEECCCSSSS
T ss_pred HHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHH-hhhcCCCeEEEccCCcCCCC
Confidence 99999999988 899999999999999999999884 22235789999999988774
No 23
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=2.5e-40 Score=356.47 Aligned_cols=296 Identities=11% Similarity=0.105 Sum_probs=231.5
Q ss_pred CCCcccHHHHHHHHHHHHHhcC---CCEEEEeCCCCC--CC-----ccc----cchhHH-----------HHhCCCceEe
Q 017410 36 SGKSLNLYSAINQALHIALETD---PRAYVFGEDVGF--GG-----VFR----CTTGLA-----------DRFGKSRVFN 90 (372)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d---~~vv~i~aD~~~--gg-----~~~----~~~~~~-----------~~~~p~r~i~ 90 (372)
.++++++|++|+++|.++++++ ++||++++|+.. |+ +++ ....|. +.| |+||+|
T Consensus 488 ~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~-~~R~~d 566 (886)
T 2qtc_A 488 QSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDE-KGQILQ 566 (886)
T ss_dssp CSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBT-TCCBEE
T ss_pred CCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcC-CCceee
Confidence 4577899999999999999998 999999999541 21 111 013343 677 999999
Q ss_pred cchhHHHH-H---HHHHHHHhcC--CeeEEEeccccc-HHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCC--CCCCC
Q 017410 91 TPLCEQGI-V---GFAIGLAAMG--NRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG--AVGHG 161 (372)
Q Consensus 91 ~GIaE~~~-v---g~A~GlA~~G--~~pi~~i~~~~F-~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G--~~g~~ 161 (372)
+||+|++| + ++|+|+|+.| ++||+. +|++| ++|++|||++++++++ . ++++....+ ..+++
T Consensus 567 ~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~-~ys~F~~qRa~Dqi~~~~d~~~--------~-~v~l~~~~~~~~~g~d 636 (886)
T 2qtc_A 567 EGINELGAGCSWLAAATSYSTNNLPMIPFYI-YYSMFGFQRIGDLCWAAGDQQA--------R-GFLIGGTSGRTTLNGE 636 (886)
T ss_dssp CCSCHHHHHHHHHHHHTHHHHTSCCCEEEEE-EEGGGSHHHHHHHHHHHHHTTC--------C-CEEEEESCSTTTSTTT
T ss_pred eccCchhhhhHHHHHHHHHHhcCCCceEEEE-EehHHHHHHHHHHHHHHHHHhc--------C-CEEEEEecCcccCCCC
Confidence 99999995 5 6999999999 899998 59999 7999999999998543 3 666665433 35778
Q ss_pred CCCCCh-hHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCc----EEEEecccccccccccCCCCC-ccccCCceEE
Q 017410 162 GHYHSQ-SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNP----VVFFEPKWLYRLSVEEVPEDD-YMLPLSEAEV 234 (372)
Q Consensus 162 G~~Hs~-~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-~~P----v~ir~p~~l~r~~~~~v~~~~-~~~~~Gk~~v 234 (372)
|+||+. +|+++|+++||++|+.|+|+.|++.++++|++. ++| +++++++....-..+.++... +.+ +|++++
T Consensus 637 G~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~~~~~~p~~~~~~~~~~-~gga~v 715 (886)
T 2qtc_A 637 GLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGI-RKGIYK 715 (886)
T ss_dssp CTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCSCCBCCCCCCTTCHHHH-HHTCEE
T ss_pred CCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCccccCCCCCCcchhhhc-cCceEE
Confidence 999975 899999999999999999999999999999986 779 999887642100003343322 334 789999
Q ss_pred eeeC----CcEEEEEeChhHHHHHHHHHHHHhc-CCceeEEeecccCCCCHHH-------------------HHHHHhcC
Q 017410 235 IREG----SDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKET-------------------VEASVRKT 290 (372)
Q Consensus 235 ~~~g----~di~ii~~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~i~P~d~~~-------------------l~~~~~~~ 290 (372)
+++| .|++||++|+++.+|++|++.|+++ ||+++|||++|++|||.+. +.+.+..
T Consensus 716 lr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~- 794 (886)
T 2qtc_A 716 LETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND- 794 (886)
T ss_dssp EEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-
T ss_pred EEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-
Confidence 9987 7999999999999999999999999 9999999999999999885 3444444
Q ss_pred CeEEEEcCCCCCCcHHHHHHHHHHHhccccCC-CcEEEEeccCC-----CcccccccCCCCcHHHHHHHHh
Q 017410 291 GRLLISHEAPVTGGFGAEISASILERCFLRLE-APVARVCGLDT-----PFPLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 291 ~~vivvEe~~~~GGlg~~i~~~l~~~~~~~l~-~~v~~ig~~~~-----~~~~lle~~~l~~~~~~~~i~~ 355 (372)
+.+|++|++.. |+++.+..+ ++ .++..+|. |. +.+.++++|||+.++|++++++
T Consensus 795 ~~vVa~ed~~~--g~~~~~~~~--------~~~~~~~~lG~-D~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~ 854 (886)
T 2qtc_A 795 APAVASTDYMK--LFAEQVRTY--------VPADDYRVLGT-DGFGRSDSRENLRHHFEVDASYVVVAALG 854 (886)
T ss_dssp SCEEEECSSCT--HHHHTTGGG--------CCSSCEEEECC-CSCCCCCCHHHHHHHTTCSHHHHHHHHHH
T ss_pred CCEEEEEeccc--chHHHHHHH--------cCCCCeEEEEe-CCCCCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 66777787754 666655322 24 56778876 43 3346899999999999998764
No 24
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=3.1e-37 Score=327.71 Aligned_cols=302 Identities=12% Similarity=0.102 Sum_probs=237.8
Q ss_pred cccHHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCccccchhHHHH---------hC-C--------CceEecchhHHHHH
Q 017410 39 SLNLYSAINQALHIALETDPR-AYVFGEDVGFGGVFRCTTGLADR---------FG-K--------SRVFNTPLCEQGIV 99 (372)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~-vv~i~aD~~~gg~~~~~~~~~~~---------~~-p--------~r~i~~GIaE~~~v 99 (372)
+...+.+++++|.++++++|+ ++++++|+. +|.+ +..|.+. +. | +|||+ ||+|++|+
T Consensus 428 ~~~atra~g~~L~~l~~~~p~~~vv~sADl~--~Sn~-t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~ 503 (845)
T 3ahc_A 428 QVEAPRALGAYCRDIIKNNPDSFRIFGPDET--ASNR-LNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCE 503 (845)
T ss_dssp EECTHHHHHHHHHHHHHHSTTTEEEEESSCT--TTTT-CGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCCCcEEEEecCCC--cccc-HHHHHhhcccccccccccCCcccccCCCCcEee-eecHHHHH
Confidence 444577889999999999999 999999987 4443 5555555 31 4 89999 99999999
Q ss_pred HHHHHHHhcCCeeEEEecccccH---HHHHHH----HHHHHHhhhhhcCCCcccccEEEE-eCCCC-CCCCCCCCCh---
Q 017410 100 GFAIGLAAMGNRAIAEIQFADYI---FPAFDQ----IVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHSQ--- 167 (372)
Q Consensus 100 g~A~GlA~~G~~pi~~i~~~~F~---~ra~dq----i~~~~a~~~~~~~~~~~~~pvvi~-~~~G~-~g~~G~~Hs~--- 167 (372)
++|+|+|+.|.+||+. +|++|+ .|+++| ||++++.+.|... ..++.++ ++.|. .|++|+|||.
T Consensus 504 gia~Glal~G~~~f~~-t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~----~~~v~~v~Th~si~~GeDGpTHQ~~e~ 578 (845)
T 3ahc_A 504 GFLEAYLLTGRHGIWS-SYESFVHVIDSMLNQHAKWLEATVREIPWRKP----ISSVNLLVSSHVWRQDHNGFSHQDPGV 578 (845)
T ss_dssp HHHHHHHHTTCEEEEE-EEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCC----CBCEEEEEESCGGGCTTTCGGGCCCTH
T ss_pred HHHHHHHhcCCCCcee-cchhhhchhhhHHHHHHHHHHhhHHhhhhccc----CCceEEEEeCCceeecCCCCCCCCcHH
Confidence 9999999999999999 688886 899999 9988555545332 2145555 66664 6899999964
Q ss_pred hHHHHHc---CCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEecccccccccccCCCCCc---cccCCceEEe---ee-
Q 017410 168 SPEAFFC---HVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDY---MLPLSEAEVI---RE- 237 (372)
Q Consensus 168 ~d~a~l~---~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~ir~p~~l~r~~~~~v~~~~~---~~~~Gk~~v~---~~- 237 (372)
+|...++ .+||++|+.|+|+.|+..+++.|++.++|+++|. +.|++.+.++..++ .+..|++.+. ++
T Consensus 579 ~d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v---~sRq~~p~~~~~~~a~~~~~~G~~v~~~as~d~ 655 (845)
T 3ahc_A 579 TSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIF---AGKQPAPTWVTLDEARAELEAGAAEWKWASNAE 655 (845)
T ss_dssp HHHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEE---CCCSCEEECSCHHHHHHHHHHSEEECTTTCCCS
T ss_pred HHHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEE---ecCCCCCccCCchhhhhhhcCCeEEEEeecccc
Confidence 3555555 8899999999999999999999999988888743 25566676655443 4667877666 35
Q ss_pred -C--CcEEEEEeChh-HHHHHHHHHHHHhcCCceeEEeeccc---CCCCHHHHHHHHhcCCeEEEEcCCCC--CCcHHHH
Q 017410 238 -G--SDITLVGWGAQ-LSIMEQACLDAEKEGISCELIDLKTL---IPWDKETVEASVRKTGRLLISHEAPV--TGGFGAE 308 (372)
Q Consensus 238 -g--~di~ii~~G~~-~~~a~~Aa~~L~~~Gi~v~vi~~~~i---~P~d~~~l~~~~~~~~~vivvEe~~~--~GGlg~~ 308 (372)
+ .|++||++|+. +.+|++|++.|+++||+++||++.++ +|.+++.+....+.++.|+++|+|.. .||+++.
T Consensus 656 ~g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~gGlgsa 735 (845)
T 3ahc_A 656 NNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYHSYAQD 735 (845)
T ss_dssp STTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEESSCHHH
T ss_pred cCCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceeeecCcHHH
Confidence 4 89999999976 56699999999999999999999999 66665544334455678889999976 6999999
Q ss_pred HHHHHHHhccccCCCcEEEEeccCC----CcccccccCCCCcHHHHHHHHh
Q 017410 309 ISASILERCFLRLEAPVARVCGLDT----PFPLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 309 i~~~l~~~~~~~l~~~v~~ig~~~~----~~~~lle~~~l~~~~~~~~i~~ 355 (372)
|++.+.++. .+.++.++|.++. +..+++++|||+.++|++++.+
T Consensus 736 V~ell~~r~---~~~~l~v~G~~d~G~tgtp~eLl~~~gld~~~Iv~~a~~ 783 (845)
T 3ahc_A 736 VRGLIYDRP---NHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALK 783 (845)
T ss_dssp HHHHTTTST---TGGGEEEECCCSCCCSCCHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHhCC---CCceEEEEeccCCCCCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 999998872 1457888988873 2346899999999999987764
No 25
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.94 E-value=1.4e-27 Score=237.85 Aligned_cols=255 Identities=16% Similarity=0.130 Sum_probs=102.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHH---HhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 017410 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLAD---RFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~---~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i 116 (372)
++-.+|+.+.+.. .+.+++..-+-...+ ...+.|.+ ++ ..+|+.+. +|++++++|.|+|+.|.||+++
T Consensus 23 ~~GneAva~~~~~---ag~~~v~~yPgtP~t---~i~~~l~~~~~~~-g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~- 93 (395)
T 1yd7_A 23 IQGDEAIARAAIL---AGCRFYAGYPITPAS---EIFEAMALYMPLV-DGVVIQME-DEIASIAAAIGASWAGAKAMTA- 93 (395)
T ss_dssp EEHHHHHHHHHHH---HTCCEEEECCBTTTB---CHHHHHHHHGGGG-TCEEEECS-CHHHHHHHHHHHHHTTCCEEEE-
T ss_pred eEHHHHHHHHHHH---cCCCEEEEEECcchH---HHHHHHHHhhhhc-CcEEEEeC-CHHHHHHHHHHHHHhCCcEEEE-
Confidence 4556777776654 355666655554422 23445554 45 56899988 9999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCCC-CCC-CCCCChhH--HHHHcCCC--CcEEEeeCCHHHH
Q 017410 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-GHG-GHYHSQSP--EAFFCHVP--GLKVVIPRSPRQA 190 (372)
Q Consensus 117 ~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~~-g~~-G~~Hs~~d--~a~l~~iP--~l~V~~Psd~~e~ 190 (372)
+.++++.+++|||.+. +. ..+ |+|++...+.. +.+ +..++++| ..++.+.| ++.|+.|++++|+
T Consensus 94 ts~~G~~~~~d~l~~a-a~--------~~~-P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea 163 (395)
T 1yd7_A 94 TSGPGFSLMQENIGYA-VM--------TET-PVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEA 163 (395)
T ss_dssp EETTHHHHHTTTCC-------------CCC-CEEEEEEC--------------------------CCCCEEECCCSHHHH
T ss_pred eCchHHHHHHHHHHHH-Hh--------cCC-CEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHH
Confidence 5778888899999753 32 135 99987543322 111 22222333 34566766 9999999999999
Q ss_pred HHHHHHhH----hCCCcEEEEeccccccccc----c---cCC----------C---CCccc--cC--------Cce----
Q 017410 191 KGLLLSCI----RDPNPVVFFEPKWLYRLSV----E---EVP----------E---DDYML--PL--------SEA---- 232 (372)
Q Consensus 191 ~~~l~~a~----~~~~Pv~ir~p~~l~r~~~----~---~v~----------~---~~~~~--~~--------Gk~---- 232 (372)
++++.+|+ +.+.||++++|+.+++... + .++ + ..|.. +. |..
T Consensus 164 ~~l~~~A~~lA~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~ 243 (395)
T 1yd7_A 164 FDFTIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTY 243 (395)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC---------------------------------
T ss_pred HHHHHHHHHHHHHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeE
Confidence 99999999 4589999999987654321 0 010 0 01111 10 110
Q ss_pred ------------------------------------------EEeeeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEE
Q 017410 233 ------------------------------------------EVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (372)
Q Consensus 233 ------------------------------------------~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi 270 (372)
.+.++|+|++||+||+++..+++|++.|+++|++++||
T Consensus 244 ~~~~~h~e~g~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi 323 (395)
T 1yd7_A 244 VTGLTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLL 323 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccccccCcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEE
Confidence 12246789999999999999999999999999999999
Q ss_pred eecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHH
Q 017410 271 DLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILE 315 (372)
Q Consensus 271 ~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~ 315 (372)
+++++||||.+.|.++++++++|+|+||+. ||++++|++.+.+
T Consensus 324 ~~r~~~Pld~~~i~~~~~~~~~vvvvEe~~--G~l~~~v~~~~~~ 366 (395)
T 1yd7_A 324 KIETIWPFDFELIERIAERVDKLYVPEMNL--GQLYHLIKEGANG 366 (395)
T ss_dssp ---------------------------------------------
T ss_pred EeCeecCCCHHHHHHHHhcCCEEEEEeCCc--hHHHHHHHHHhcC
Confidence 999999999999999999999999999996 9999999988765
No 26
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.83 E-value=2.3e-19 Score=199.79 Aligned_cols=221 Identities=13% Similarity=0.139 Sum_probs=161.3
Q ss_pred hCCCceEecchhHHHHHHHHHHHHhcCCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEe--CCCCCCC
Q 017410 83 FGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA--PYGAVGH 160 (372)
Q Consensus 83 ~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~--~~G~~g~ 160 (372)
||..+.++...+|.+++++|.|+|++|.|++++ +.+..+..+.|.+.. ++.. .+ |+|++. ++|.+.+
T Consensus 51 ~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~t~-Ts~~Gl~lm~e~l~~-~ag~--------~~-P~Vi~va~R~g~~~g 119 (1231)
T 2c42_A 51 FGQTLTIREMQSEAGAAGAVHGALAAGALTTTF-TASQGLLLMIPNMYK-ISGE--------LL-PGVFHVTARAIAAHA 119 (1231)
T ss_dssp TSCCCEEEECSSHHHHHHHHHHHHHTTCCEEEE-ECHHHHHHHHHHHHH-HHHT--------TC-CCEEEEEECCCCSSS
T ss_pred cCCceEEEecCChHHHHHHHHHHHHcCChHhhh-ccHHHHHHHHHHHHH-HhCC--------CC-CEEEEECCCCccCCC
Confidence 556689999999999999999999999999999 566667777777653 3321 25 888874 4444322
Q ss_pred CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEecccccccccc--cCCC------------
Q 017410 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE--EVPE------------ 222 (372)
Q Consensus 161 ~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~r~~~~--~v~~------------ 222 (372)
...+-.|+|. ++...+|+.|++|++++|+++++..|++ ++.||+++++..++....+ ++++
T Consensus 120 lsi~~~hsd~-~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~ 198 (1231)
T 2c42_A 120 LSIFGDHQDI-YAARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKA 198 (1231)
T ss_dssp BCCSCCSHHH-HTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHH
T ss_pred CcCCCchhhH-HHHhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhh
Confidence 1221223443 4567899999999999999999999854 6899999999854322100 0100
Q ss_pred ----------CCccccCCc------------------------------------------eE-EeeeCCcEEEEEeChh
Q 017410 223 ----------DDYMLPLSE------------------------------------------AE-VIREGSDITLVGWGAQ 249 (372)
Q Consensus 223 ----------~~~~~~~Gk------------------------------------------~~-v~~~g~di~ii~~G~~ 249 (372)
++..++.|. .+ +-.+++|++||+||++
T Consensus 199 ~~~~~~~~~~p~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs~ 278 (1231)
T 2c42_A 199 LAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGSS 278 (1231)
T ss_dssp HHHHHHHSCCTTSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECSTH
T ss_pred hhhccccccCCCCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCHH
Confidence 001111121 12 2246799999999999
Q ss_pred HHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHH-hcCCeEEEEcCCCCCC----cHHHHHHHHHHH
Q 017410 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV-RKTGRLLISHEAPVTG----GFGAEISASILE 315 (372)
Q Consensus 250 ~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~-~~~~~vivvEe~~~~G----Glg~~i~~~l~~ 315 (372)
+..+++|++.|+++|++++||++++++|||.+.|.+++ +++++|+|+|++...| .+..+|...+..
T Consensus 279 ~~~~~eAv~~L~~~G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~ 349 (1231)
T 2c42_A 279 CETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVE 349 (1231)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988 6779999999984332 355566666654
No 27
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.68 E-value=9.4e-17 Score=133.57 Aligned_cols=103 Identities=20% Similarity=0.280 Sum_probs=84.8
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHHh
Q 017410 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILER 316 (372)
Q Consensus 237 ~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~~ 316 (372)
+|+|++||+||+++..+++|++.|+++|++++++++++++|||.+.|.+.++++++|+|+|++. .||++++|...+
T Consensus 12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~-~G~l~~~i~~~~--- 87 (118)
T 3ju3_A 12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNY-TAQAAQMIKLYT--- 87 (118)
T ss_dssp SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCC-CCCHHHHHHHHH---
T ss_pred CCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCC-CCcHHHHHHHHc---
Confidence 6789999999999999999999999999999999999999999999999999999999999985 799999997543
Q ss_pred ccccCCCcEEEEeccCCCcccccccCCCCcHHHHHHHHh
Q 017410 317 CFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 317 ~~~~l~~~v~~ig~~~~~~~~lle~~~l~~~~~~~~i~~ 355 (372)
+. .....+.+++|.+. +++++.+.+++
T Consensus 88 ~~-~~~~~i~~~~G~~~-----------~~~ei~~~i~~ 114 (118)
T 3ju3_A 88 GI-DIKNKILKYNGRHM-----------TEDEILKSAKE 114 (118)
T ss_dssp CC-CCCCCCCCBTTBCC-----------CHHHHHHHHHH
T ss_pred CC-CceeEEeeeCCeeC-----------CHHHHHHHHHH
Confidence 21 01234556666664 45666665543
No 28
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=96.00 E-value=0.085 Score=54.06 Aligned_cols=168 Identities=14% Similarity=0.100 Sum_probs=92.0
Q ss_pred cCCCcc-CCCCcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHh
Q 017410 29 QHDGGV-GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAA 107 (372)
Q Consensus 29 ~~~~~~-~~~~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~ 107 (372)
-|+..+ -...+++..+++.+.|.+.. =+.++..+... .....+.+.+ . +.+.+=....|+++.-+|.|.|+
T Consensus 9 ~~~~~~~~~~~~~~~a~~lv~~L~~~G---V~~vfg~PG~~---~~~l~~al~~-~-~~~~~i~~~~E~~Aa~~A~GyAr 80 (565)
T 2nxw_A 9 HHSSGLVPRGSHMKLAEALLRALKDRG---AQAMFGIPGDF---ALPFFKVAEE-T-QILPLHTLSHEPAVGFAADAAAR 80 (565)
T ss_dssp -----CCCCSCCCBHHHHHHHHHHHTT---CCCEEECCCGG---GHHHHHHHHH-H-CSSCEEECSSHHHHHHHHHHHHH
T ss_pred ccccCCccCCCCcCHHHHHHHHHHHcC---CCEEEECCCcc---hHHHHHHHHh-C-CCcEEEecCcHHHHHHHHHHHHH
Confidence 344444 34445677787777776533 23333332211 1222344443 3 44444567799999999999999
Q ss_pred c-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC---CCCCCCCCC-CCC-hh---HHHHHcCCCC
Q 017410 108 M-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP---YGAVGHGGH-YHS-QS---PEAFFCHVPG 178 (372)
Q Consensus 108 ~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~---~G~~g~~G~-~Hs-~~---d~a~l~~iP~ 178 (372)
. |...++..++++-+..++.-|.+ +- +. .. ||++++. ....+.+.. +|+ |+ ...+++.+-.
T Consensus 81 ~tgkp~v~~~TsGpG~~N~~~gv~~-A~----~~----~v-Pll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k 150 (565)
T 2nxw_A 81 YSSTLGVAAVTYGAGAFNMVNAVAG-AY----AE----KS-PVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITV 150 (565)
T ss_dssp HHTSCEEEEECTTHHHHTTHHHHHH-HH----HT----TC-CEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCS
T ss_pred HhCCCeEEEECCCCCHHHHHHHHHH-HH----hh----CC-CEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhhe
Confidence 7 65555555677777666666643 22 22 25 9888732 112233332 343 32 3579998877
Q ss_pred cEEEeeCCHHHHHHHHHHhH----hCCCcEEEEeccccccc
Q 017410 179 LKVVIPRSPRQAKGLLLSCI----RDPNPVVFFEPKWLYRL 215 (372)
Q Consensus 179 l~V~~Psd~~e~~~~l~~a~----~~~~Pv~ir~p~~l~r~ 215 (372)
+.... .+++++...++.|+ ..++||+|-.|+.+.+.
T Consensus 151 ~~~~v-~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~~ 190 (565)
T 2nxw_A 151 AQARL-DDPAKAPAEIARVLGAARAQSRPVYLEIPRNMVNA 190 (565)
T ss_dssp CEEEC-CCTTTHHHHHHHHHHHHHHHTCCEEEEEEGGGTTC
T ss_pred EEEEe-CCHHHHHHHHHHHHHHHHhCCCCEEEECChhhhcC
Confidence 74443 45555555555444 34799999998776543
No 29
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=95.13 E-value=0.067 Score=55.16 Aligned_cols=111 Identities=10% Similarity=-0.019 Sum_probs=74.9
Q ss_pred cchhHHHHHHHHHHHHhcCCee-EEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC--CCC-CCCCCCCCC
Q 017410 91 TPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP--YGA-VGHGGHYHS 166 (372)
Q Consensus 91 ~GIaE~~~vg~A~GlA~~G~~p-i~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~--~G~-~g~~G~~Hs 166 (372)
....|+++..+|.|.|+..-+| ++..+.++.+..++.-|.+ + +.. .. ||++++. ... .+. +..+.
T Consensus 48 ~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl~~-A-~~~-------~v-Pll~Itg~~p~~~~g~-~~~Q~ 116 (590)
T 1v5e_A 48 QVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGLYD-A-AMD-------NI-PVVAILGSRPQRELNM-DAFQE 116 (590)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHHHH-H-HHH-------TC-CEEEEEEECCGGGTTT-TCTTC
T ss_pred eeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHHHH-H-Hhc-------CC-CEEEEcCCCCcccCCC-Ccccc
Confidence 3579999999999999985444 5555677777777776653 3 221 25 8888732 111 121 21121
Q ss_pred hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEecccccc
Q 017410 167 QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYR 214 (372)
Q Consensus 167 ~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l~r 214 (372)
.....+++.+..+ .+.+.+++++...++.|++ . ++||+| .|..+..
T Consensus 117 ~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv~~ 167 (590)
T 1v5e_A 117 LNQNPMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDFAK 167 (590)
T ss_dssp CCCHHHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTGGG
T ss_pred cCHHHHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccchhh
Confidence 2345899999877 6777888888888887776 3 499999 9998753
No 30
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=94.99 E-value=0.28 Score=50.07 Aligned_cols=153 Identities=12% Similarity=-0.002 Sum_probs=93.1
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeEEEec
Q 017410 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQ 117 (372)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~ 117 (372)
+++..+++.+.|.+.. =+.++..+... .....+.+.+ . +=|++. ...|+++..+|.|.|+. |...++..+
T Consensus 3 ~~~~a~~l~~~L~~~G---V~~vfg~PG~~---~~~l~~al~~-~-~i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~T 73 (563)
T 2uz1_A 3 MITGGELVVRTLIKAG---VEHLFGLHGAH---IDTIFQACLD-H-DVPIID-TRHEAAAGHAAEGYARAGAKLGVALVT 73 (563)
T ss_dssp EEEHHHHHHHHHHHHT---CCCEEECCCGG---GHHHHHHHHH-H-TCCEEE-CSSHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred ccCHHHHHHHHHHHCC---CCEEEECCCCc---hHHHHHHHHh-c-CCcEEe-eCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 4566777777776553 23333322211 1122333433 3 356665 46999999999999998 655565557
Q ss_pred ccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CC-CCCCCCCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHH
Q 017410 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YG-AVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (372)
Q Consensus 118 ~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G-~~g~~G~~Hs-~~d~a~l~~iP~l~V~~Psd~~e~~~~l 194 (372)
+++-+..++.-|.+ + +. . .. ||++++. .. ..-+.+.++. .+...+++.+..+ .+...+++++...+
T Consensus 74 sGpG~~N~~~~l~~-A-~~---~----~~-Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l 142 (563)
T 2uz1_A 74 AGGGFTNAVTPIAN-A-WL---D----RT-PVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKW-AHRVMATEHIPRLV 142 (563)
T ss_dssp TTHHHHTTHHHHHH-H-HH---H----TC-CEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHH
T ss_pred cCccHHHHHHHHHH-H-Hh---c----CC-CEEEEeCCCCcccCCchhhhhhccHHHHhhhhhce-EEEcCCHHHHHHHH
Confidence 77777777666653 2 22 2 25 9888732 11 1111233333 3355889988876 45556777887777
Q ss_pred HHhHh----C-CCcEEEEeccc
Q 017410 195 LSCIR----D-PNPVVFFEPKW 211 (372)
Q Consensus 195 ~~a~~----~-~~Pv~ir~p~~ 211 (372)
+.|+. . ++||+|-.|..
T Consensus 143 ~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 143 MQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp HHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHhcCCCCceEEEEeCHH
Confidence 77775 2 59999988887
No 31
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=94.54 E-value=0.29 Score=50.10 Aligned_cols=154 Identities=12% Similarity=0.046 Sum_probs=89.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeEEEecc
Q 017410 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~ 118 (372)
++..+++.+.|.+. +-+.++..+... .....+.+.+ - .=|++.+ ..|+++..+|.|.|+. |...++..++
T Consensus 11 ~~~a~~l~~~L~~~---GV~~vfg~PG~~---~~~l~~al~~-~-~i~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~Ts 81 (566)
T 1ozh_A 11 AHGADLVVSQLEAQ---GVRQVFGIPGAK---IDKVFDSLLD-S-SIRIIPV-RHEANAAFMAAAVGRITGKAGVALVTS 81 (566)
T ss_dssp SCHHHHHHHHHHHH---TCCEEEEECCTT---THHHHHHGGG-S-SSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECS
T ss_pred CcHHHHHHHHHHHC---CCCEEEEcCCCc---hHHHHHHHHh-C-CCcEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence 44566666666554 334444433321 1112333433 1 2355554 6999999999999997 6554555577
Q ss_pred cccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CCC-CCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 017410 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA-VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (372)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G~-~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~ 196 (372)
++-+..++.-|.+ +- +. .. ||++++. ... .-+.+.++......+++.+..+ .+...+++++...++.
T Consensus 82 GpG~~N~~~~l~~-A~----~~----~v-Pll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~ 150 (566)
T 1ozh_A 82 GPGCSNLITGMAT-AN----SE----GD-PVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKY-AIEVTAPDALAEVVSN 150 (566)
T ss_dssp THHHHTTHHHHHH-HH----HH----TC-CEEEEEEECCTTTC------CCCHHHHHGGGCSE-EEECCSGGGHHHHHHH
T ss_pred ChHHHHHHHHHHH-HH----hc----CC-CEEEEeCCCccccCCCCcccccCHHHHHHHHhhe-EEEcCCHHHHHHHHHH
Confidence 7777776666653 22 12 25 9888732 111 1111322323456899998877 4555677777777776
Q ss_pred hHh----C-CCcEEEEeccccc
Q 017410 197 CIR----D-PNPVVFFEPKWLY 213 (372)
Q Consensus 197 a~~----~-~~Pv~ir~p~~l~ 213 (372)
|+. . ++||+|-.|..+.
T Consensus 151 A~~~A~~~r~GPV~l~iP~dv~ 172 (566)
T 1ozh_A 151 AFRAAEQGRPGSAFVSLPQDVV 172 (566)
T ss_dssp HHHHHHSSSCCEEEEEEEHHHH
T ss_pred HHHHHhcCCCCeEEEEeChhhh
Confidence 664 3 5999998888754
No 32
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=94.53 E-value=0.77 Score=46.86 Aligned_cols=154 Identities=14% Similarity=0.026 Sum_probs=90.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeEEEecc
Q 017410 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~ 118 (372)
++..+++.+.|.+ .+=+.++..+... .....+.+.+. +.=|++-+ ..|+++..+|.|.|+. | ..++..++
T Consensus 3 ~~~a~~l~~~L~~---~GV~~vfg~PG~~---~~~l~~al~~~-~~i~~i~~-~~E~~Aa~~A~Gyar~tg-~~v~~~Ts 73 (568)
T 2wvg_A 3 YTVGTYLAERLVQ---IGLKHHFAVAGDY---NLVLLDNLLLN-KNMEQVYC-CNELNCGFSAEGYARAKG-AAAAVVTY 73 (568)
T ss_dssp EEHHHHHHHHHHH---TTCSEEEECCCTT---THHHHHHHHTC-TTSEEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECT
T ss_pred cCHHHHHHHHHHH---cCCCEEEeCCCCc---cHHHHHHHhcc-CCceEecc-CcHHHHHHHHHHHHHhhC-CeEEEEeC
Confidence 3455555555543 3444455443321 11123334322 12355554 7999999999999986 8 55555578
Q ss_pred cccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC--CC-CCCCCC-CCCC----h--hHHHHHcCCCCcEEEeeCCHH
Q 017410 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP--YG-AVGHGG-HYHS----Q--SPEAFFCHVPGLKVVIPRSPR 188 (372)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~--~G-~~g~~G-~~Hs----~--~d~a~l~~iP~l~V~~Psd~~ 188 (372)
++-...++.-|.+ |+ +. .. ||++++. .- ..+.+. .+|+ + ....+++.+-.+ .+.+.+++
T Consensus 74 GpG~~N~~~gia~--A~---~~----~v-Pll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~-~~~v~~~~ 142 (568)
T 2wvg_A 74 SVGALSAFDAIGG--AY---AE----NL-PVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAA-AEAIYTPE 142 (568)
T ss_dssp TTTHHHHHHHHHH--HH---HT----TC-CEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSC-EEEECSGG
T ss_pred CCCHHHHHHHHHH--Hh---hh----CC-CEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeE-EEEeCCHH
Confidence 8877777776654 32 22 25 9888732 11 122222 2342 2 235899998887 45556667
Q ss_pred HHHHHHHHhHh----CCCcEEEEeccccc
Q 017410 189 QAKGLLLSCIR----DPNPVVFFEPKWLY 213 (372)
Q Consensus 189 e~~~~l~~a~~----~~~Pv~ir~p~~l~ 213 (372)
++...++.|++ .++||+|-.|..+.
T Consensus 143 ~~~~~l~~A~~~A~~~~GPV~l~iP~dv~ 171 (568)
T 2wvg_A 143 EAPAKIDHVIKTALREKKPVYLEIACNIA 171 (568)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEEEGGGT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEechhHh
Confidence 66666666554 47999999888754
No 33
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=94.26 E-value=0.2 Score=51.28 Aligned_cols=153 Identities=12% Similarity=-0.053 Sum_probs=91.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCee-EEEecc
Q 017410 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQF 118 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~p-i~~i~~ 118 (372)
++..+++.+.|.+. +=+.++..+... ......+.|. + =|++. ...|+++.-+|.|.|+..-+| ++..++
T Consensus 12 ~~~a~~l~~~L~~~---GV~~vfg~PG~~--~~~~l~~al~---~-i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~Ts 81 (573)
T 2iht_A 12 PTAAHALLSRLRDH---GVGKVFGVVGRE--AASILFDEVE---G-IDFVL-TRHEFTAGVAADVLARITGRPQACWATL 81 (573)
T ss_dssp CCHHHHHHHHHHHT---TCCEEEECCCGG--GGTCCSCSST---T-CEEEE-CSSHHHHHHHHHHHHHHHCSCEEEEECT
T ss_pred ccHHHHHHHHHHHC---CCCEEEEecCCc--chhHHHHHHc---C-CeEEe-eCCHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence 56666766666543 333344332211 0111233333 2 34454 469999999999999984444 554567
Q ss_pred cccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC--CC-CCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 017410 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP--YG-AVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (372)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~--~G-~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~ 195 (372)
++-...++.-|.+ +... .. ||++++. .- ..+..+.+|......+++.+..+. +...+++++...++
T Consensus 82 GpG~~N~~~~v~~-A~~~--------~~-Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~ 150 (573)
T 2iht_A 82 GPGMTNLSTGIAT-SVLD--------RS-PVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYA-VELQRPHEITDLVD 150 (573)
T ss_dssp THHHHHHHHHHHH-HHHH--------TC-CEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEE-EECCSGGGHHHHHH
T ss_pred CchHHHHHHHHHH-HHhh--------CC-CEEEEcccCcccccCCcCccccCCHHHHHHhHhhEE-EEcCCHHHHHHHHH
Confidence 7777777776653 3221 25 9888732 11 112213344445568999988774 45567777777777
Q ss_pred HhHh----C-CCcEEEEeccccc
Q 017410 196 SCIR----D-PNPVVFFEPKWLY 213 (372)
Q Consensus 196 ~a~~----~-~~Pv~ir~p~~l~ 213 (372)
.|++ . ++||+|-.|..+.
T Consensus 151 ~A~~~A~~~~~GPV~l~iP~dv~ 173 (573)
T 2iht_A 151 SAVNAAMTEPVGPSFISLPVDLL 173 (573)
T ss_dssp HHHHHHTBSSCCCEEEEEEHHHH
T ss_pred HHHHHHhcCCCceEEEEecchHh
Confidence 7765 3 5999999888764
No 34
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=93.74 E-value=0.7 Score=47.66 Aligned_cols=154 Identities=12% Similarity=-0.013 Sum_probs=91.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeE-EEec
Q 017410 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAI-AEIQ 117 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi-~~i~ 117 (372)
++..+++.+.|. +.+=+.++..+... +....+.+.+ . ++--+-....|+++..+|.|.|+. |-+|- +..+
T Consensus 27 ~~~a~~l~~~L~---~~GV~~vfg~PG~~---~~~l~~al~~-~-~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~T 98 (616)
T 2pan_A 27 MRAVDAAMYVLE---KEGITTAFGVPGAA---INPFYSAMRK-H-GGIRHILARHVEGASHMAEGYTRATAGNIGVCLGT 98 (616)
T ss_dssp EEHHHHHHHHHH---HTTCCEEEECCCGG---GHHHHHHHHH-H-CCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEEC
T ss_pred CcHHHHHHHHHH---HCCCCEEEECCCCc---cHHHHHHHHh-c-CCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeC
Confidence 455566655553 33445555443321 1222344433 3 432333567999999999999998 45654 3346
Q ss_pred ccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEe--CCCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 017410 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA--PYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (372)
Q Consensus 118 ~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~--~~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~ 195 (372)
+++-...++.-|.+ +.+. .. ||++++ +....-+.+..+......+++.+-.+.. ...++.++..+++
T Consensus 99 sGpG~~N~~~~l~~-A~~~--------~v-PlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~ 167 (616)
T 2pan_A 99 SGPAGTDMITALYS-ASAD--------SI-PILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAV-TVREAALVPRVLQ 167 (616)
T ss_dssp STHHHHTSHHHHHH-HHHT--------TC-CEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEE-ECCSGGGHHHHHH
T ss_pred CCchHHHHHHHHHH-HHhc--------CC-CEEEEecCCcccccCcccccccCHHHHHHHHHHhhc-ccCCHHHHHHHHH
Confidence 77777777776653 3221 25 988873 2111111222222234578888887754 4466788888888
Q ss_pred HhHhC-----CCcEEEEecccc
Q 017410 196 SCIRD-----PNPVVFFEPKWL 212 (372)
Q Consensus 196 ~a~~~-----~~Pv~ir~p~~l 212 (372)
.|++. ++||+|-.|..+
T Consensus 168 ~A~~~A~~~r~GPV~l~iP~d~ 189 (616)
T 2pan_A 168 QAFHLMRSGRPGPVLVDLPFDV 189 (616)
T ss_dssp HHHHHHHSSSCCCEEEEEEHHH
T ss_pred HHHHHHhcCCCceEEEEcchhh
Confidence 87762 699999888764
No 35
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=93.65 E-value=1.1 Score=45.67 Aligned_cols=154 Identities=14% Similarity=-0.018 Sum_probs=89.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeEEEecc
Q 017410 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~ 118 (372)
++..+++.+.|.+. +=+.++..+... .....+.+.+. +.=|++. ...|+++..+|.|.|+. | ..++..++
T Consensus 3 ~~~a~~l~~~L~~~---GV~~vfg~PG~~---~~~l~~al~~~-~~i~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~Ts 73 (566)
T 2vbi_A 3 YTVGMYLAERLVQI---GLKHHFAVAGDY---NLVLLDQLLLN-KDMKQIY-CCNELNCGFSAEGYARSNG-AAAAVVTF 73 (566)
T ss_dssp CBHHHHHHHHHHHH---TCSEEEECCCTT---THHHHHHHHTC-TTSEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEECT
T ss_pred cCHHHHHHHHHHHc---CCCEEEeCCCCc---cHHHHHHHhcC-CCCeEEe-eCcHHHHHHHHHHHHhhcC-CeEEEEeC
Confidence 45566666666543 444454433321 11123334322 1124554 56999999999999987 8 66666677
Q ss_pred cccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CC--CCCCCC-CCCC----h--hHHHHHcCCCCcEEEeeCCHH
Q 017410 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YG--AVGHGG-HYHS----Q--SPEAFFCHVPGLKVVIPRSPR 188 (372)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G--~~g~~G-~~Hs----~--~d~a~l~~iP~l~V~~Psd~~ 188 (372)
++-...++.-|.+ ++ +. .. ||++++. .. ..+.+. .+|. + ....+++.+-.+. +.+.+++
T Consensus 74 GpG~~N~~~gia~--A~---~~----~v-Pll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~-~~v~~~~ 142 (566)
T 2vbi_A 74 SVGAISAMNALGG--AY---AE----NL-PVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAA-ESITDAH 142 (566)
T ss_dssp TTTHHHHHHHHHH--HH---HT----TC-CEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEE-EEECSSS
T ss_pred CCCHHHHHHHHHH--HH---hh----CC-CEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEE-EEeCCHH
Confidence 8877777766653 22 22 25 9888732 11 122222 2342 2 2358999887764 4445555
Q ss_pred HHHHHHHHhH----hCCCcEEEEeccccc
Q 017410 189 QAKGLLLSCI----RDPNPVVFFEPKWLY 213 (372)
Q Consensus 189 e~~~~l~~a~----~~~~Pv~ir~p~~l~ 213 (372)
++...++.|+ ..++||+|-.|..+.
T Consensus 143 ~~~~~l~~A~~~a~~~~GPV~l~iP~d~~ 171 (566)
T 2vbi_A 143 SAPAKIDHVIRTALRERKPAYLDIACNIA 171 (566)
T ss_dssp SHHHHHHHHHHHHHHHTCCEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEechhhc
Confidence 5555555555 347999998888754
No 36
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=93.65 E-value=0.26 Score=50.70 Aligned_cols=152 Identities=14% Similarity=0.052 Sum_probs=92.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCC-CceEecchhHHHHHHHHHHHHhc-CCeeEEEec
Q 017410 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGK-SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQ 117 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p-~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~ 117 (372)
++..+++.+.|.+ .+-+.++..+... .....+.+.+ . + =|++ ....|+++..+|.|.|+. |...++..+
T Consensus 12 ~~~a~~l~~~L~~---~GV~~vfg~PG~~---~~~l~~al~~-~-~~i~~i-~~~~E~~Aa~~A~Gyar~tg~p~v~~~T 82 (590)
T 1ybh_A 12 RKGADILVEALER---QGVETVFAYPGGA---SMEIHQALTR-S-SSIRNV-LPRHEQGGVFAAEGYARSSGKPGICIAT 82 (590)
T ss_dssp EEHHHHHHHHHHT---TTCCEEEECCCGG---GHHHHHHHHH-C-SSCEEC-CCSSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred ccHHHHHHHHHHH---cCCCEEEEcCCCc---hHHHHHHHhc-c-CCccEE-eeCCHHHHHHHHHHHHHHHCCCEEEEec
Confidence 5666666665543 3344444433211 1122333433 2 3 2444 355999999999999997 655566567
Q ss_pred ccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC--CC-CCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHH
Q 017410 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP--YG-AVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (372)
Q Consensus 118 ~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~--~G-~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l 194 (372)
+++....++.-|.+ +- . . .. ||++++. .- ..+ .+..+......+++.+-.+ .+...+++++..++
T Consensus 83 sGpG~~N~~~gv~~-A~-~---~----~v-Pll~itg~~~~~~~g-~~~~Q~~d~~~~~~~~~k~-~~~v~~~~~i~~~l 150 (590)
T 1ybh_A 83 SGPGATNLVSGLAD-AL-L---D----SV-PLVAITGQVPRRMIG-TDAFQETPIVEVTRSITKH-NYLVMDVEDIPRII 150 (590)
T ss_dssp TTHHHHTTHHHHHH-HH-H---H----TC-CEEEEEEECCGGGTT-TTCTTCCCHHHHHGGGSSE-EEECCCGGGHHHHH
T ss_pred cCchHHHHHHHHHH-HH-h---h----CC-CEEEEeCcCCccccC-CCcccccCHHHHHHHHhCe-EEecCCHHHHHHHH
Confidence 77777777666653 22 1 1 25 9888732 11 122 2322223455889988887 55667788898888
Q ss_pred HHhHhC-----CCcEEEEecccc
Q 017410 195 LSCIRD-----PNPVVFFEPKWL 212 (372)
Q Consensus 195 ~~a~~~-----~~Pv~ir~p~~l 212 (372)
+.|++. ++||+|-.|..+
T Consensus 151 ~~A~~~a~~~~~GPV~l~iP~dv 173 (590)
T 1ybh_A 151 EEAFFLATSGRPGPVLVDVPKDI 173 (590)
T ss_dssp HHHHHHHHSSSCCEEEEEEEHHH
T ss_pred HHHHHHHhhCCCceEEEEeCcch
Confidence 888862 689999888865
No 37
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=93.64 E-value=0.38 Score=49.12 Aligned_cols=156 Identities=13% Similarity=0.025 Sum_probs=92.1
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeEEEe
Q 017410 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEI 116 (372)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i 116 (372)
.+++..+++.+.|.+. +-+.++..+... .....+.+.+ . .=|++.+ ..|+++.-+|.|.|+. |...++..
T Consensus 8 ~~~~~a~~l~~~L~~~---GV~~vfg~PG~~---~~~l~~al~~-~-~i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~ 78 (568)
T 2c31_A 8 ELTDGFHVLIDALKMN---DIDTMYGVVGIP---ITNLARMWQD-D-GQRFYSF-RHEQHAGYAASIAGYIEGKPGVCLT 78 (568)
T ss_dssp CEEEHHHHHHHHHHHT---TCCEEEECCCTT---THHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred CcccHHHHHHHHHHHc---CCCEEEEeCCCc---cHHHHHHHHh-C-CCcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4467777777666543 334444433211 1222333432 2 3455554 7999999999999998 55445555
Q ss_pred cccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCC---CCC-CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHH
Q 017410 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA---VGH-GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKG 192 (372)
Q Consensus 117 ~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~---~g~-~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~ 192 (372)
++++-...++.-|.+ +- . . .. ||++++..-. .+. .+..+..+...+++.+-.+.. ...+++++..
T Consensus 79 TsGpG~~N~~~~i~~-A~-~---~----~v-Pll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~-~v~~~~~~~~ 147 (568)
T 2c31_A 79 VSAPGFLNGVTSLAH-AT-T---N----CF-PMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASF-RINSIKDIPI 147 (568)
T ss_dssp CSHHHHHHHHHHHHH-HH-H---H----TC-CEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEE-ECCSGGGHHH
T ss_pred cCCccHHHHHHHHHH-HH-h---c----CC-CEEEEccCCCccccCCCCCcccccCHHHHHHhhhheee-ecCCHHHHHH
Confidence 777777777666653 32 1 2 25 9888732111 121 132222334578888887744 4456666666
Q ss_pred HHHHhHh-----CCCcEEEEeccccc
Q 017410 193 LLLSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 193 ~l~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
.++.|++ .++||+|-.|..+.
T Consensus 148 ~i~~A~~~A~~~~~GPV~l~iP~dv~ 173 (568)
T 2c31_A 148 GIARAVRTAVSGRPGGVYVDLPAKLF 173 (568)
T ss_dssp HHHHHHHHHHSSSCCEEEEEEETHHH
T ss_pred HHHHHHHHhcCCCCceEEEeCCHHHh
Confidence 6666654 47999999998764
No 38
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=93.52 E-value=0.22 Score=50.42 Aligned_cols=115 Identities=21% Similarity=0.150 Sum_probs=73.8
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CC--CCCCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YG--AVGHGG 162 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G--~~g~~G 162 (372)
|++ ....|+++..+|.|.|+. |...++..+.++-+..++.-|.+ + + .. .. ||++++. .. ..+.+.
T Consensus 40 ~~i-~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~~-A-~---~~----~~-Pll~itg~~~~~~~~~~~ 108 (528)
T 1q6z_A 40 RYI-LALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSN-A-W---NS----HS-PLIVTAGQQTRAMIGVEA 108 (528)
T ss_dssp EEE-ECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHH-H-H---HT----TC-CEEEEEEECCHHHHTTTC
T ss_pred cEE-EECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHHH-H-h---hc----CC-CEEEEeCCCcccccCCCc
Confidence 444 356999999999999998 65556655566667777776653 2 2 22 25 9888732 11 113333
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l~ 213 (372)
.+|..+...+++.+..+ ...+.+++++...++.|+. . ++||+|-.|..+.
T Consensus 109 ~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~~ 163 (528)
T 1q6z_A 109 LLTNVDAANLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDW 163 (528)
T ss_dssp TTCCTTGGGSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGGT
T ss_pred ccccccHHHHHHHhhHh-hhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhh
Confidence 33323455788888877 4555666666666666664 3 6899998888764
No 39
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=93.37 E-value=0.35 Score=49.26 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=73.5
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC--CCCCCCCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP--YGAVGHGGH 163 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~--~G~~g~~G~ 163 (372)
|++. ...|+++.-+|-|.|+. |...++..++++-...++.-|.+ +- +. .. ||++++. .-..-+.+.
T Consensus 43 ~~i~-~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi~~-A~----~~----~v-Pvl~itg~~~~~~~~~~~ 111 (549)
T 3eya_A 43 EWMS-TRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFD-CH----RN----HV-PVLAIAAHIPSSEIGSGY 111 (549)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHH-HH----HT----TC-CEEEEEEESCGGGTTSCC
T ss_pred eEEE-eCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHHHH-HH----hh----CC-CEEEEeCCCchhhcCCCC
Confidence 5554 45999999999999997 65555555777777777666653 22 22 25 9888732 111111233
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeccccc
Q 017410 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLY 213 (372)
Q Consensus 164 ~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~p~~l~ 213 (372)
.+......+++.+-.+. ....+++++...++.|++ .++||+|-.|..+.
T Consensus 112 ~Q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~dv~ 164 (549)
T 3eya_A 112 FQETHPQELFRECSHYC-ELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDVA 164 (549)
T ss_dssp TTCCCHHHHTSTTCSEE-EECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHHHH
T ss_pred CCccCHHHHHhhhhheE-EEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhHh
Confidence 33234568999988764 445566666666666554 58999998887654
No 40
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=93.29 E-value=0.56 Score=48.33 Aligned_cols=157 Identities=9% Similarity=-0.027 Sum_probs=88.3
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeEEEe
Q 017410 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEI 116 (372)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i 116 (372)
.+++..+++.+.|.+. +-+.++..+.- ......+.|.+.-..=|++- ...|+++.-+|.|.|+. |...++..
T Consensus 9 ~~~~~a~~l~~~L~~~---GV~~vfg~PG~---~~~~l~dal~~~~~~i~~i~-~~hE~~Aa~aA~GyAr~tg~~gv~~~ 81 (603)
T 4feg_A 9 TNILAGAAVIKVLEAW---GVDHLYGIPGG---SINSIMDALSAERDRIHYIQ-VRHEEVGAMAAAADAKLTGKIGVCFG 81 (603)
T ss_dssp CEEEHHHHHHHHHHHT---TCCEEEECCCG---GGHHHHHHHHHTTTTSEEEE-CSSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred CeeeHHHHHHHHHHHC---CCCEEEEeCCC---chHHHHHHHHhccCCCeEEE-ecChHHHHHHHHHHHHHhCCceEEEe
Confidence 3456666666666543 33444443321 11122344443210125554 45999999999999987 65555555
Q ss_pred cccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC---CCCCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHH
Q 017410 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP---YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGL 193 (372)
Q Consensus 117 ~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~---~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~ 193 (372)
++++-...++.-|.+ +- +. .. ||++++. ....+. +..+......+++.+-.+... ..+++++...
T Consensus 82 TsGpG~~N~~~gia~-A~----~~----~v-Pvl~itG~~~~~~~~~-~~~Q~~d~~~~~~~~tk~~~~-v~~~~~~~~~ 149 (603)
T 4feg_A 82 SAGPGGTHLMNGLYD-AR----ED----HV-PVLALIGQFGTTGMNM-DTFQEMNENPIYADVADYNVT-AVNAATLPHV 149 (603)
T ss_dssp CTTHHHHTTHHHHHH-HH----HT----TC-CEEEEEEECCTTTTTS-CCTTCCCCGGGGTTTCSEEEE-CCCSTTHHHH
T ss_pred cCCchHHHHHHHHHH-HH----Hc----CC-CEEEEecCCcccccCC-CccccccHHHHhhhhceEEEE-cCCHHHHHHH
Confidence 777777777666653 22 22 25 9888732 111121 222222345788888776444 3455555555
Q ss_pred HHHhH----hCCCcEEEEeccccc
Q 017410 194 LLSCI----RDPNPVVFFEPKWLY 213 (372)
Q Consensus 194 l~~a~----~~~~Pv~ir~p~~l~ 213 (372)
++.|+ ..++||+|-.|..+.
T Consensus 150 i~~A~~~A~~~~GPV~l~iP~dv~ 173 (603)
T 4feg_A 150 IDEAIRRAYAHQGVAVVQIPVDLP 173 (603)
T ss_dssp HHHHHHHHHHHTSEEEEEEETTGG
T ss_pred HHHHHHHHhcCCCCEEEEeChhhh
Confidence 55544 458999998888654
No 41
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=92.82 E-value=0.63 Score=47.41 Aligned_cols=154 Identities=14% Similarity=0.025 Sum_probs=90.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeEEEecc
Q 017410 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~ 118 (372)
++..+++.+.|.+. +=+.++..+... .....+.+.+ . .=|++.+ ..|+++.-+|.|.|+. |.-.++..++
T Consensus 8 ~~~a~~l~~~L~~~---GV~~vfg~PG~~---~~~l~~al~~-~-~i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~Ts 78 (564)
T 2q28_A 8 TDGMHIIVEALKQN---NIDTIYGVVGIP---VTDMARHAQA-E-GIRYIGF-RHEQSAGYAAAASGFLTQKPGICLTVS 78 (564)
T ss_dssp EEHHHHHHHHHHHT---TCCEEEECCCTT---THHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECS
T ss_pred CcHHHHHHHHHHHc---CCCEEEECCCcc---hHHHHHHHHh-C-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 46666666666543 334444433311 1222333432 2 3456655 7999999999999998 5444555567
Q ss_pred cccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCCC---CCC-CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHH
Q 017410 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA---VGH-GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (372)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G~---~g~-~G~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l 194 (372)
++-...++.-|.+ +- . . .+ ||++++..-. .+. .|..+..+...+++.+-.+.... .+++++...+
T Consensus 79 GpG~~N~~~gi~~-A~-~---~----~v-Pll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v-~~~~~~~~~i 147 (564)
T 2q28_A 79 APGFLNGLTALAN-AT-V---N----GF-PMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRV-NQPQDLGIAL 147 (564)
T ss_dssp HHHHHHHHHHHHH-HH-H---H----TC-CEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEEC-CSGGGHHHHH
T ss_pred CchHHHHHHHHHH-HH-h---c----CC-CEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeec-CCHHHHHHHH
Confidence 7777777666653 32 1 2 25 9888732111 121 13222234558888888775444 4566666666
Q ss_pred HHhHh-----CCCcEEEEeccccc
Q 017410 195 LSCIR-----DPNPVVFFEPKWLY 213 (372)
Q Consensus 195 ~~a~~-----~~~Pv~ir~p~~l~ 213 (372)
+.|++ .++||+|-.|..+.
T Consensus 148 ~~A~~~A~~~~~GPV~l~iP~dv~ 171 (564)
T 2q28_A 148 ARAIRVSVSGRPGGVYLDLPANVL 171 (564)
T ss_dssp HHHHHHHHSSSCCEEEEEEEHHHH
T ss_pred HHHHHHHhcCCCceEEEEcCHHHh
Confidence 66654 47999999988764
No 42
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=92.82 E-value=0.36 Score=49.63 Aligned_cols=114 Identities=12% Similarity=0.003 Sum_probs=73.8
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC--CCCCCCCC-
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP--YGAVGHGG- 162 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~--~G~~g~~G- 162 (372)
|++.+ ..|+++.-+|.|.|+. |...++..++++....++.-|.+ +- .. .. ||++++. .-..-+.+
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv~~-A~----~~----~v-Pll~itg~~~~~~~~~~~ 113 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAMQE-AR----TG----RI-PAVHIGLNSDGRLAGRSE 113 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHHHH-HH----HT----TC-CEEEEEEESCGGGTTCTT
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHHHH-HH----hc----CC-CEEEEecCCcccccCCCC
Confidence 45544 6999999999999997 54445555688877666666653 22 22 25 9888732 11111123
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeccccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~ir~p~~l~ 213 (372)
.+|..+... ++.+..+. +...+++++...++.|+. . ++||+|-.|..+.
T Consensus 114 ~~Q~~d~~~-~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 167 (589)
T 2pgn_A 114 AAQQVPWQS-FTPIARST-QRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDLT 167 (589)
T ss_dssp CSSCCCGGG-GTTTSSEE-EECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETHHH
T ss_pred cccccChhh-ccccEEEE-eecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHhhh
Confidence 344344457 88888774 455677777777777765 3 5999999888753
No 43
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=92.74 E-value=0.45 Score=49.93 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=75.3
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CC--CCCCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YG--AVGHGG 162 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G--~~g~~G 162 (372)
|++- ...|+++..+|.|.|+. |...++..++++....++.-|.+ +- +. .+ ||++++. .. ..+ .+
T Consensus 122 ~~v~-~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gia~-A~----~d----~v-PllvItG~~~~~~~g-~~ 189 (677)
T 1t9b_A 122 NFVL-PKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMAD-AF----AD----GI-PMVVFTGQVPTSAIG-TD 189 (677)
T ss_dssp EEEC-CSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHHHH-HH----HH----TC-CEEEEEEECCTTTTT-SC
T ss_pred eEEE-eCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHHHH-HH----Hc----CC-CEEEEeCCCChhhcC-CC
Confidence 4554 57999999999999997 65556656788877777666653 22 22 25 9888732 11 112 22
Q ss_pred CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEecccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWL 212 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~ir~p~~l 212 (372)
..+..+...+++.+-.+.+ ...++.++...++.|++ .++||+|-.|+-+
T Consensus 190 a~Q~~Dq~~i~~~~tk~~~-~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~Dv 243 (677)
T 1t9b_A 190 AFQEADVVGISRSCTKWNV-MVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDV 243 (677)
T ss_dssp CTTCCCHHHHTGGGSSEEE-ECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred CccccCHHHHhhhheeEEE-EcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCHHH
Confidence 2222345588888887744 45678888888888876 3689999888654
No 44
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=92.31 E-value=2.1 Score=43.46 Aligned_cols=150 Identities=14% Similarity=0.130 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhc-CCCEEEEeCCCCCCCccccchhHHHHhCCC-ceEecchhHHHHHHHHHHHHhc-CCeeEEEeccccc
Q 017410 45 AINQALHIALET-DPRAYVFGEDVGFGGVFRCTTGLADRFGKS-RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADY 121 (372)
Q Consensus 45 a~~~~L~~l~~~-d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~-r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F 121 (372)
..++.|.+.+++ +=+.++..+.-. .....+.+.+ . ++ +++- -..|+++.-+|-|.|+. |...++..++++-
T Consensus 9 ~~a~~lv~~L~~~GV~~vFg~PG~~---~~~l~dal~~-~-~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG 82 (556)
T 3hww_A 9 RWAAVILEALTRHGVRHICIAPGSR---STLLTLAAAE-N-SAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTA 82 (556)
T ss_dssp HHHHHHHHHHHTTTCCEEEECCCTT---SHHHHHHHHH-C-TTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCC---cHHHHHHHhh-C-CCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcH
Confidence 345555554443 344444433211 1122334433 2 33 5554 55899999999999997 6555665678887
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC---CCCCCCCCCCCChhHHHHHcCCCCcEEEeeCC-----HHHHHHH
Q 017410 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP---YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRS-----PRQAKGL 193 (372)
Q Consensus 122 ~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~---~G~~g~~G~~Hs~~d~a~l~~iP~l~V~~Psd-----~~e~~~~ 193 (372)
...++--|.+ + +. . .. ||++++. ....+ .+.+|.....++++.+-.+..-.+.- +.++.++
T Consensus 83 ~~N~~~gia~-A-~~---d----~v-Pll~itG~~~~~~~g-~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~ 151 (556)
T 3hww_A 83 VANLYPALIE-A-GL---T----GE-KLILLTADRPPELID-CGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVST 151 (556)
T ss_dssp HHTTHHHHHH-H-HH---H----CC-CEEEEEEECCGGGSS-SSCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHH
T ss_pred HHhhhHHHHH-H-HH---h----CC-CeEEEeCCCCHHHhc-cCCCccccHHHHHhhheeEEEecCCCcccccHHHHHHH
Confidence 7777666653 2 22 2 25 9888742 11122 23333233457888888776555432 3568889
Q ss_pred HHHhHhC--CCcEEEEeccc
Q 017410 194 LLSCIRD--PNPVVFFEPKW 211 (372)
Q Consensus 194 l~~a~~~--~~Pv~ir~p~~ 211 (372)
++.|+.. +|||+|-.|..
T Consensus 152 i~~A~~~~r~GPV~i~iP~d 171 (556)
T 3hww_A 152 IDHALGTLHAGGVHINCPFA 171 (556)
T ss_dssp HHHHHHSCCSSCEEEEEECC
T ss_pred HHHHHhcCCCCCEEEeCCcC
Confidence 9999864 69999988874
No 45
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=90.16 E-value=3.6 Score=42.18 Aligned_cols=114 Identities=16% Similarity=0.059 Sum_probs=68.5
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC---CCCCCCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP---YGAVGHGG 162 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~---~G~~g~~G 162 (372)
|++-+ ..|+++.-+|-|.|+. |...++..++++-...++.-|.+ +- +. .. ||++++. ....+. +
T Consensus 71 ~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gia~-A~----~~----~v-Plv~ItG~~~~~~~g~-~ 138 (604)
T 2x7j_A 71 SVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVE-AH----YS----RV-PIIVLTADRPHELREV-G 138 (604)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHHHH-HH----HH----TC-CEEEEEEECCGGGSSS-C
T ss_pred eEEEe-cChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHHHHHHH-Hh----hc----CC-CEEEEeCCCCHHHhCC-C
Confidence 55554 6999999999999997 54445555777777666666643 22 22 25 9888732 111222 2
Q ss_pred CCCChhHHHHHcCCCCcEEEe--eCC--------HHHHHHHHHHhHh-CCCcEEEEecccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVVI--PRS--------PRQAKGLLLSCIR-DPNPVVFFEPKWL 212 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~~--Psd--------~~e~~~~l~~a~~-~~~Pv~ir~p~~l 212 (372)
..+......+++.+-.+.... |.+ +..+.++++.|.. .++||+|-.|...
T Consensus 139 ~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 139 APQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp CTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred CCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 222223346777776664444 343 2344444444444 4799999888874
No 46
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=89.88 E-value=2.8 Score=42.82 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=67.9
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCCC---CCCCCC
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG---AVGHGG 162 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~G---~~g~~G 162 (372)
|++-+ ..|+++.-+|-|.|+. |...++..++++-...++--|.+ + + +. .. ||++++..- ..+ .|
T Consensus 51 ~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~~~gia~-A-~---~d----~v-Pll~itG~~p~~~~g-~~ 118 (578)
T 3lq1_A 51 KIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAE-A-N---LS----QI-PLIVLTADRPHELRN-VG 118 (578)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTTHHHHHH-H-H---HT----TC-CEEEEEEECCGGGTT-SS
T ss_pred eEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhhhHHHHH-H-H---hc----CC-CeEEEeCCCCHHhhc-CC
Confidence 55554 4999999999999997 65555555777777776666652 2 2 22 25 988874211 112 22
Q ss_pred CCCChhHHHHHcCCCCcEEE--eeCCHH--------HHHHHHHHhHhC-CCcEEEEeccc
Q 017410 163 HYHSQSPEAFFCHVPGLKVV--IPRSPR--------QAKGLLLSCIRD-PNPVVFFEPKW 211 (372)
Q Consensus 163 ~~Hs~~d~a~l~~iP~l~V~--~Psd~~--------e~~~~l~~a~~~-~~Pv~ir~p~~ 211 (372)
..+..+...+++.+-.+..- .|.+.. .+.++++.|... ++||+|-.|..
T Consensus 119 ~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 119 APQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp CTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEECC
T ss_pred CCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECccC
Confidence 22222344777777666444 355533 234444444443 79999988874
No 47
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=89.61 E-value=1.5 Score=44.55 Aligned_cols=114 Identities=14% Similarity=0.050 Sum_probs=70.8
Q ss_pred ceEecchhHHHHHHHHHHHHhc-CCeeEEEecccccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeCC-CC--CCCC-
Q 017410 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY-GA--VGHG- 161 (372)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~~-G~--~g~~- 161 (372)
|++- ...|+++..+|.|.|+. | .+++..++++-...++.-|.+ + +. . .. ||++++.. .. .+.+
T Consensus 44 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~-A-~~---~----~~-Pll~itg~~~~~~~~~~~ 111 (563)
T 2vk8_A 44 RWAG-NANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGIAG-S-YA---E----HV-GVLHVVGVPSISAQAKQL 111 (563)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHHHH-H-HH---H----TC-CEEEEEEECCHHHHHTTC
T ss_pred eEEc-cCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHHHH-H-Hh---h----CC-CEEEEECCCChHHhhccc
Confidence 4444 57999999999999997 7 666655677776666666653 2 22 2 25 98887321 11 1111
Q ss_pred CCCCC------hhHHHHHcCCCCcEEEeeCCH----HHHHHHHHHhHhCCCcEEEEeccccc
Q 017410 162 GHYHS------QSPEAFFCHVPGLKVVIPRSP----RQAKGLLLSCIRDPNPVVFFEPKWLY 213 (372)
Q Consensus 162 G~~Hs------~~d~a~l~~iP~l~V~~Psd~----~e~~~~l~~a~~~~~Pv~ir~p~~l~ 213 (372)
..||. |+...+++.+-.+.... .++ ..+.++++.|...++||+|-.|..+.
T Consensus 112 ~~~~~~g~~~~q~~~~~~~~~~k~~~~v-~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d~~ 172 (563)
T 2vk8_A 112 LLHHTLGNGDFTVFHRMSANISETTAMI-TDIATAPAEIDRCIRTTYVTQRPVYLGLPANLV 172 (563)
T ss_dssp CCTTSCSSSCSSHHHHHHHTTCSEEEEC-CCTTTHHHHHHHHHHHHHHHTSCEEEEEETTGG
T ss_pred ccccccCCcchHHHHHHhhhhEEEEEEe-CCHHHHHHHHHHHHHHHHhCCCCEEEEechhhh
Confidence 12221 23467899888764444 454 44455555555557999999998764
No 48
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=88.91 E-value=2.7 Score=42.54 Aligned_cols=156 Identities=12% Similarity=-0.039 Sum_probs=85.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhcCCeeEEEeccc
Q 017410 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFA 119 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~G~~pi~~i~~~ 119 (372)
++..+++.+.|.+ .+=+.++..+... +...++.+.+ . ++--+-....|+++..+|.|.|+..-.+++..+++
T Consensus 5 ~~~a~~l~~~L~~---~GV~~vfg~PG~~---~~~l~~al~~-~-~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsG 76 (552)
T 1ovm_A 5 YCVADYLLDRLTD---CGADHLFGVPGDY---NLQFLDHVID-S-PDICWVGCANELNASYAADGYARCKGFAALLTTFG 76 (552)
T ss_dssp CBHHHHHHHHHHH---TTCCEEEECCCGG---GHHHHHHHHH-C-SSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETT
T ss_pred cCHHHHHHHHHHH---cCCCEEEECCChh---HHHHHHHHhc-C-CCceEEeeCcHHHHHHHHHHHHHhhCCcEEEEccC
Confidence 4555666555543 3445454433211 1122333432 3 33233456799999999999998733666555677
Q ss_pred ccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC--CC-CCCCC-CCCCC------hhHHHHHcCCCCcEEEeeCC--H
Q 017410 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP--YG-AVGHG-GHYHS------QSPEAFFCHVPGLKVVIPRS--P 187 (372)
Q Consensus 120 ~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~--~G-~~g~~-G~~Hs------~~d~a~l~~iP~l~V~~Psd--~ 187 (372)
+-...++--|.+ +- +. .. ||++++. .. ..+.+ ..||. |+...+++.+-......+.+ +
T Consensus 77 pG~~N~~~gv~~-A~----~~----~~-Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~~~~~ 146 (552)
T 1ovm_A 77 VGELSAMNGIAG-SY----AE----HV-PVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNAC 146 (552)
T ss_dssp HHHHHTHHHHHH-HH----HT----TC-CEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHH
T ss_pred CcHHHHHHHHHH-Hh----hh----cC-CEEEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEccccHH
Confidence 766666666642 22 22 25 9888732 11 11111 11221 23457888887776666541 3
Q ss_pred HHHHHHHHHhHhCCCcEEEEeccccc
Q 017410 188 RQAKGLLLSCIRDPNPVVFFEPKWLY 213 (372)
Q Consensus 188 ~e~~~~l~~a~~~~~Pv~ir~p~~l~ 213 (372)
..+.++++.|...++||+|-.|..+.
T Consensus 147 ~~i~~A~~~a~~~~GPV~l~iP~d~~ 172 (552)
T 1ovm_A 147 YEIDRVLTTMLRERRPGYLMLPADVA 172 (552)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeehhhc
Confidence 34444445454446999998888653
No 49
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=88.43 E-value=1.1 Score=45.71 Aligned_cols=152 Identities=11% Similarity=-0.012 Sum_probs=85.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecchhHHHHHHHHHHHHhc-CCeeEEEecc
Q 017410 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GIaE~~~vg~A~GlA~~-G~~pi~~i~~ 118 (372)
++..+++.+.|.+ .+-+.++..+... +....+.+.+ . ++--+-....|+++..+|.|.|+. | ..++..++
T Consensus 25 ~~~a~~l~~~L~~---~GV~~vfg~PG~~---~~~l~~al~~-~-~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~ts 95 (570)
T 2vbf_A 25 YTVGDYLLDRLHE---LGIEEIFGVPGDY---NLQFLDQIIS-R-EDMKWIGNANELNASYMADGYARTKK-AAAFLTTF 95 (570)
T ss_dssp CBHHHHHHHHHHH---TTCCEEEECCCGG---GHHHHHHHHH-C-SSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEET
T ss_pred CCHHHHHHHHHHH---cCCCEEEECCCcc---hHHHHHHHhc-C-CCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcC
Confidence 3455555555543 3444454433311 1122333432 2 332233467999999999999965 8 55555567
Q ss_pred cccHHHHHHHHHHHHHhhhhhcCCCcccccEEEEeC-CCC--CCCCC-CCCC------hhHHHHHcCCCCcEEEeeCCHH
Q 017410 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA--VGHGG-HYHS------QSPEAFFCHVPGLKVVIPRSPR 188 (372)
Q Consensus 119 ~~F~~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~~~-~G~--~g~~G-~~Hs------~~d~a~l~~iP~l~V~~Psd~~ 188 (372)
.+....++.-|.+ + + .. .. ||++++. ... .+.+. .+|. ++...+++.+.......+. +
T Consensus 96 GpG~~N~~~gi~~-A-~---~~----~v-Plv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~--~ 163 (570)
T 2vbf_A 96 GVGELSAINGLAG-S-Y---AE----NL-PVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA--E 163 (570)
T ss_dssp THHHHHHHHHHHH-H-H---HT----TC-CEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT--T
T ss_pred CCCHHHHHHHHHH-H-h---hh----CC-CEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc--c
Confidence 7776677666652 2 2 22 25 9888732 111 11122 2331 1235788888877655544 5
Q ss_pred HHHHHHHHhHh----CCCcEEEEecccc
Q 017410 189 QAKGLLLSCIR----DPNPVVFFEPKWL 212 (372)
Q Consensus 189 e~~~~l~~a~~----~~~Pv~ir~p~~l 212 (372)
++...++.|++ .++||+|-.|..+
T Consensus 164 ~~~~~l~~A~~~A~~~~GPV~l~iP~d~ 191 (570)
T 2vbf_A 164 NATYEIDRVLSQLLKERKPVYINLPVDV 191 (570)
T ss_dssp THHHHHHHHHHHHHHHCCCEEEEEEHHH
T ss_pred cHHHHHHHHHHHHhhCCCCEEEEcchhh
Confidence 66555555554 4799999888765
No 50
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=84.02 E-value=2 Score=44.99 Aligned_cols=149 Identities=12% Similarity=0.066 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc
Q 017410 44 SAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD 120 (372)
Q Consensus 44 ~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~ 120 (372)
..+.+.|.+.+...++-++++.|++.-..+. ...+.-.. |.+|+..|. +=...+..|.|++++. -++++++ .++
T Consensus 464 ~~v~~~L~~~l~~~~~~~iv~~~vg~~~~~~-~~~~~~~~-p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i-~GD 540 (677)
T 1t9b_A 464 QTVIKKLSKVANDTGRHVIVTTGVGQHQMWA-AQHWTWRN-PHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDI-DGD 540 (677)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEECSSHHHHHH-HHHSCCCS-TTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEE-EEH
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCchHHHHH-HHhcccCC-CCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEE-Eee
Confidence 4566777777754233344556654100110 11121122 778888764 2222677888887762 3555554 555
Q ss_pred cH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCC----------CC--CCCCCChhHH-HHHcCCCCcEEEee
Q 017410 121 YI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAV----------GH--GGHYHSQSPE-AFFCHVPGLKVVIP 184 (372)
Q Consensus 121 F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~----------g~--~G~~Hs~~d~-a~l~~iP~l~V~~P 184 (372)
.. +..+..+. .+... ++ |++++ .-+|.. .. .+......|. .+.... |+..+..
T Consensus 541 Gsf~~~~~eL~-ta~~~--------~l-~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v 609 (677)
T 1t9b_A 541 ASFNMTLTELS-SAVQA--------GT-PVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAM-GLKGLRV 609 (677)
T ss_dssp HHHHHHGGGHH-HHHHH--------TC-CCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHT-TCEEEEE
T ss_pred hHHhccHHHHH-HHHHh--------CC-CeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHc-CCeEEEE
Confidence 52 22333332 23322 24 54433 333321 01 1111112233 344444 6777788
Q ss_pred CCHHHHHHHHHHhHhCCCcEEE
Q 017410 185 RSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 185 sd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+..|+...++++++.++|++|
T Consensus 610 ~~~~el~~al~~a~~~~gp~lI 631 (677)
T 1t9b_A 610 KKQEELDAKLKEFVSTKGPVLL 631 (677)
T ss_dssp CSHHHHHHHHHHHHHCSSCEEE
T ss_pred CCHHHHHHHHHHHHHCCCcEEE
Confidence 9999999999999999999998
No 51
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=74.69 E-value=6.5 Score=29.97 Aligned_cols=74 Identities=9% Similarity=0.073 Sum_probs=49.4
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-----cCCeEEEEcCCCCCCcH-HHHHHHH
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-----KTGRLLISHEAPVTGGF-GAEISAS 312 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-----~~~~vivvEe~~~~GGl-g~~i~~~ 312 (372)
++++|.+. +....|.+|.+.|++.|++.+.+|+.. |.+...+..+ .+=.+|++.++...+|+ ..+|.+.
T Consensus 4 a~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~ 78 (92)
T 2lqo_A 4 AALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAK 78 (92)
T ss_dssp SCEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHH
T ss_pred CcEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHH
Confidence 35667665 566788899999999999999999864 4544333322 12366888665555554 3567777
Q ss_pred HHHhc
Q 017410 313 ILERC 317 (372)
Q Consensus 313 l~~~~ 317 (372)
|.+.+
T Consensus 79 L~el~ 83 (92)
T 2lqo_A 79 LVKIA 83 (92)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77653
No 52
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=69.02 E-value=5.1 Score=31.27 Aligned_cols=70 Identities=10% Similarity=0.026 Sum_probs=46.8
Q ss_pred CCcEEEEEeC----hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcCCCCCCcHHHHH
Q 017410 238 GSDITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 238 g~di~ii~~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe~~~~GGlg~~i 309 (372)
..+++|++.+ +....+.+|.+.|++.|++.+.+++..- |--.+.+.+... .+=..++++... .||+....
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~-~~~~~~l~~~~g~~tvP~ifi~g~~-iGG~d~l~ 91 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILEN-EMLRQGLKEYSNWPTFPQLYIGGEF-FGGCDITL 91 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCSSSCEEEETTEE-EECHHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEE-EeCHHHHH
Confidence 4578888887 3678899999999999999999998641 111223333222 233567787654 69886543
No 53
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=64.46 E-value=28 Score=30.92 Aligned_cols=60 Identities=12% Similarity=0.012 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHH
Q 017410 251 SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (372)
Q Consensus 251 ~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l 313 (372)
..+.++++.|++.|.+++++++.. ++|.+...+.++..+.||+.---+ .+++...+..++
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~i 106 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQ--GYDIESEIENYLWADTIIYQMPAW-WMGEPWILKKYI 106 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECChH-hccCCHHHHHHH
Confidence 445566677888899999999975 788888888898998887764433 466666555544
No 54
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=64.31 E-value=14 Score=30.67 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHH
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFG 306 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg 306 (372)
|++-..|...++.|++.|+++.++++... .+.+.+.+.+.+++.||+-=-.+ .|.+.
T Consensus 16 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~d~ii~Gspty-~g~~p 72 (159)
T 3fni_A 16 GYSDRLAQAIINGITKTGVGVDVVDLGAA--VDLQELRELVGRCTGLVIGMSPA-ASAAS 72 (159)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEEESSSC--CCHHHHHHHHHTEEEEEEECCBT-TSHHH
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEECcCc--CCHHHHHHHHHhCCEEEEEcCcC-CCCcc
Confidence 44445555566667777999999987643 15666666666776666553333 35543
No 55
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=63.08 E-value=13 Score=27.14 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHhcCCceeEEeecccCC-CCHH---HHHHHHhc------CCeEEEEcCCCCCCcHHHH
Q 017410 249 QLSIMEQACLDAEKEGISCELIDLKTLIP-WDKE---TVEASVRK------TGRLLISHEAPVTGGFGAE 308 (372)
Q Consensus 249 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P-~d~~---~l~~~~~~------~~~vivvEe~~~~GGlg~~ 308 (372)
....+.+|.+.|++.|++.+.+++..... -+.+ .+.+.... +=..|+++++...||+...
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d~l 82 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQL 82 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHHH
T ss_pred cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHHHH
Confidence 45678889999999999999999875321 2333 34433322 2256777455567998654
No 56
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=61.73 E-value=8.4 Score=30.20 Aligned_cols=69 Identities=16% Similarity=0.055 Sum_probs=45.8
Q ss_pred CCcEEEEEeC----hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcCCCCCCcHHHH
Q 017410 238 GSDITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGAE 308 (372)
Q Consensus 238 g~di~ii~~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe~~~~GGlg~~ 308 (372)
.++++|++-| +....|.+|.+.|++.|++.+.+|+.. .|--.+.+.+... .+=+.|+++... .||+...
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~-d~~~~~~l~~~~g~~tvP~ifi~g~~-iGG~d~l 88 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS-DEEVRQGLKAYSSWPTYPQLYVSGEL-IGGLDII 88 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEE-EECHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC-CHHHHHHHHHHHCCCCCCEEEECCEE-EecHHHH
Confidence 4578888876 566789999999999999999999875 1111122333221 234667787654 6888553
No 57
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=61.42 E-value=12 Score=38.30 Aligned_cols=110 Identities=9% Similarity=-0.030 Sum_probs=60.8
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~ 158 (372)
|.+|+..+. +=...+++|.|+++.. -++++.+ .++.. +..+..+. .++.. ++ |++++ .-.+..
T Consensus 410 ~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~-~GDG~~~~~~~~l~-~a~~~--------~l-p~~~vv~nN~~~~ 478 (603)
T 4feg_A 410 SNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNL-AGDGGASMTMQDLA-TQVQY--------HL-PVINVVFTNCQYG 478 (603)
T ss_dssp TCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEE-EEHHHHHHHGGGHH-HHHHT--------TC-CCEEEEEECSBCH
T ss_pred CCceecCcccccccchhHHHhhHHHhCCCCcEEEE-eccHHHhhhHHHHH-HHHHH--------Cc-CeEEEEEECCchH
Confidence 567776432 1123667888888775 4566654 66653 33344332 23322 34 65544 322221
Q ss_pred -----------C-CCCCCCChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhH--hCCCcEEE
Q 017410 159 -----------G-HGGHYHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCI--RDPNPVVF 206 (372)
Q Consensus 159 -----------g-~~G~~Hs~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~--~~~~Pv~i 206 (372)
. ..+......|+ .+... -|+..+.+.++.|+...++.+. +.++|++|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a-~G~~~~~v~~~~~l~~al~~a~~~~~~gP~lI 540 (603)
T 4feg_A 479 FIKDEQEDTNQNDFIGVEFNDIDFSKIADG-VHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLI 540 (603)
T ss_dssp HHHHHHHHHCSSCCCSSBCCCCCHHHHHHH-TTCEEEEECBGGGHHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHHHhcCCCcccCcCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHHhcCCCcEEE
Confidence 0 11111111233 23333 2566777789999999999999 88999998
No 58
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=61.19 E-value=19 Score=36.19 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=26.3
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 178 GLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 178 ~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
|+..+...++.|+...++.+++.++|++|
T Consensus 495 G~~~~~v~~~~~l~~al~~a~~~~gp~li 523 (549)
T 3eya_A 495 GITGIRVEKASEVDEALQRAFSIDGPVLV 523 (549)
T ss_dssp TSEEEEECSGGGHHHHHHHHHHSSSCEEE
T ss_pred CCcEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 66777889999999999999999999998
No 59
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=59.94 E-value=23 Score=31.92 Aligned_cols=63 Identities=16% Similarity=0.070 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCceeEEeecccCCCC---------HHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 250 LSIMEQACLDAEKEGISCELIDLKTLIPWD---------KETVEASVRKTGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 250 ~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d---------~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
...+..+++.+++.|.+++++++.-+ |+. .+.+.+.+...+.+|+.=--| .+++...+..+|-
T Consensus 51 ~~La~~~~~~l~~~g~eve~idL~~~-pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y-n~sipa~LKn~iD 122 (247)
T 2q62_A 51 RLLAEEARRLLEFFGAEVKVFDPSGL-PLPDAAPVSHPKVQELRELSIWSEGQVWVSPER-HGAMTGIMKAQID 122 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCTTC-CCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS-SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhcC-CCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC-CCCccHHHHHHHH
Confidence 34455567778878999999999875 322 456777788888877764443 5777777776664
No 60
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=59.78 E-value=8.9 Score=31.41 Aligned_cols=67 Identities=18% Similarity=0.085 Sum_probs=44.4
Q ss_pred CcEEEEEeC----hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcCCCCCCcHHH
Q 017410 239 SDITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGA 307 (372)
Q Consensus 239 ~di~ii~~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe~~~~GGlg~ 307 (372)
.+++|.++| .....|.+|.+.|++.|++...+|+.. .|--.+.|.+... .+=.+|+++... .||+..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~-d~~~~~~L~~~~G~~tvP~VfI~G~~-iGG~d~ 106 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGEL-VGGCDI 106 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEE-EESHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC-CHHHHHHHHHHHCCCCcCEEEECCEE-EEChHH
Confidence 457788777 666788999999999999999999875 2211223333222 233567776654 688854
No 61
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=59.32 E-value=17 Score=31.05 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHH-HHhcCCceeEEeecccCC--------C--CHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 247 GAQLSIMEQACLD-AEKEGISCELIDLKTLIP--------W--DKETVEASVRKTGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 247 G~~~~~a~~Aa~~-L~~~Gi~v~vi~~~~i~P--------~--d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
|.+...+..+++. |+++|.+++++++..+.. . +.+.+.+.+...+.+|+.=--| .|++...+..++.
T Consensus 16 g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y-~~~~p~~lK~~ld 93 (197)
T 2vzf_A 16 STTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIY-KASYTGLLKAFLD 93 (197)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCcc-CCCCCHHHHHHHH
Confidence 3445556666777 888899999999876421 1 2345556677788777664443 5777777766664
No 62
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=58.36 E-value=22 Score=29.49 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=36.2
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHH
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFG 306 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg 306 (372)
|++-..|...++.|+++|+++.++++.. .+.+.+.+.+.+++.|++.=--+ .|.+.
T Consensus 12 GnT~~~A~~ia~~l~~~g~~v~~~~~~~---~~~~~~~~~~~~~d~ii~Gspty-~g~~p 67 (161)
T 3hly_A 12 GYSDRLSQAIGRGLVKTGVAVEMVDLRA---VDPQELIEAVSSARGIVLGTPPS-QPSEA 67 (161)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEETTT---CCHHHHHHHHHHCSEEEEECCBS-SCCHH
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEECCC---CCHHHHHHHHHhCCEEEEEcCCc-CCchh
Confidence 4444555566666777799999998764 45566666666777776664444 35544
No 63
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=56.62 E-value=31 Score=33.54 Aligned_cols=73 Identities=8% Similarity=0.090 Sum_probs=50.9
Q ss_pred EEEEEeChhH----HHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 241 ITLVGWGAQL----SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 241 i~ii~~G~~~----~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
-++|.|+||+ ..|...++.|+++|+++.++++..+..-|...+.+.+.+++.+++---. ..|++...+...|.
T Consensus 267 ~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT-~~~~~~p~~~~~l~ 343 (410)
T 4dik_A 267 KVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVST-YEAEIHPLMRFTLL 343 (410)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECC-TTSSSCHHHHHHHH
T ss_pred ceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCC-cCCcCCHHHHHHHH
Confidence 3445566654 4456666678888999999999888888888888888888877654444 35666555554443
No 64
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=56.48 E-value=7.4 Score=30.10 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=44.7
Q ss_pred CCcEEEEEeC----hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcCCCCCCcHHH
Q 017410 238 GSDITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGA 307 (372)
Q Consensus 238 g~di~ii~~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe~~~~GGlg~ 307 (372)
..+++|.+.| .....+.+|.+.|++.|++...+++.. .|--.+.+.+... .+=.+|+++.. ..||+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~vP~ifi~g~-~igG~d~ 86 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKTFSNWPTYPQLYVRGD-LVGGLDI 86 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS-CHHHHHHHHHHHSCCSSCEEECSSS-EEECHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCE-EEcCHHH
Confidence 4568888887 566788899999999999999999865 1111123333222 22245666655 4788854
No 65
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=55.62 E-value=22 Score=30.05 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=42.3
Q ss_pred eChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHH-------------HHHHHHhcCCeEEEEcCCCCCCcHHHHHHHH
Q 017410 246 WGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKE-------------TVEASVRKTGRLLISHEAPVTGGFGAEISAS 312 (372)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~-------------~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~ 312 (372)
+|++-..|...++.|++.|.+++++++... +.+.- .+.+.+..++.||+.=--+ .|++...+..+
T Consensus 16 ~g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~~~~~~~lk~~ 93 (200)
T 2a5l_A 16 HGATAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR-FGNMASPLKYF 93 (200)
T ss_dssp SSHHHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEECB-TTBCCHHHHHH
T ss_pred CChHHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcChh-ccCccHHHHHH
Confidence 355556677777778888999999998875 21110 1234566777766654433 57777767666
Q ss_pred HHH
Q 017410 313 ILE 315 (372)
Q Consensus 313 l~~ 315 (372)
+..
T Consensus 94 ld~ 96 (200)
T 2a5l_A 94 LDG 96 (200)
T ss_dssp HHT
T ss_pred HHH
Confidence 643
No 66
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=55.26 E-value=29 Score=30.67 Aligned_cols=68 Identities=7% Similarity=-0.006 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHHHhc-CCceeEEeecccCC---------------------CCHHHHHHHHhcCCeEEEEcCCCCCCc
Q 017410 247 GAQLSIMEQACLDAEKE-GISCELIDLKTLIP---------------------WDKETVEASVRKTGRLLISHEAPVTGG 304 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~i~P---------------------~d~~~l~~~~~~~~~vivvEe~~~~GG 304 (372)
|.+...+..+++.|++. |.+++++++.-+.+ -|.+.+.+.+...+.||+.=--+ .++
T Consensus 15 s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y-~~~ 93 (242)
T 1sqs_A 15 SKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVY-LQN 93 (242)
T ss_dssp CHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEEC-SSS
T ss_pred ChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEcccc-ccC
Confidence 34455666677788887 99999999875421 24456667777888777654333 577
Q ss_pred HHHHHHHHHHH
Q 017410 305 FGAEISASILE 315 (372)
Q Consensus 305 lg~~i~~~l~~ 315 (372)
+...+..++-.
T Consensus 94 ~p~~lK~~iDr 104 (242)
T 1sqs_A 94 VSVDTKNFIER 104 (242)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77777666644
No 67
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=54.00 E-value=42 Score=34.51 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=23.2
Q ss_pred eeCCHHHHHHHHHHhHhCCCcEEEEecc
Q 017410 183 IPRSPRQAKGLLLSCIRDPNPVVFFEPK 210 (372)
Q Consensus 183 ~Psd~~e~~~~l~~a~~~~~Pv~ir~p~ 210 (372)
...|..++..+++.|.+.++|++|-...
T Consensus 260 dG~d~~~l~~al~~A~~~~~P~lI~v~t 287 (629)
T 2o1x_A 260 DGHNVQELVWLLERLVDLDGPTILHIVT 287 (629)
T ss_dssp ESSCHHHHHHHHHHHTTSSSEEEEEEEC
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 5568999999999998889999985433
No 68
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=53.07 E-value=43 Score=34.99 Aligned_cols=39 Identities=8% Similarity=0.051 Sum_probs=31.2
Q ss_pred HHHcCCCCcEEEee---CCHHHHHHHHHHhHh-CCCcEEEEecc
Q 017410 171 AFFCHVPGLKVVIP---RSPRQAKGLLLSCIR-DPNPVVFFEPK 210 (372)
Q Consensus 171 a~l~~iP~l~V~~P---sd~~e~~~~l~~a~~-~~~Pv~ir~p~ 210 (372)
..++.. |+.++.+ .|..++..+++.+.+ .++|++|-...
T Consensus 229 ~~~~a~-G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~T 271 (690)
T 3m49_A 229 DRYKAY-GWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRT 271 (690)
T ss_dssp HHHHHH-TCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred HHHHHc-CCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 455554 7889888 789999999999998 68999996543
No 69
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=52.72 E-value=22 Score=28.16 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=29.9
Q ss_pred eChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEc
Q 017410 246 WGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISH 297 (372)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvE 297 (372)
+|++-..|...++.|++.|++++++++....+ + .+.+++.+++.=
T Consensus 9 tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~----~l~~~d~iiig~ 53 (138)
T 5nul_A 9 TGNTEKMAELIAKGIIESGKDVNTINVSDVNI---D----ELLNEDILILGC 53 (138)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH---H----HHTTCSEEEEEE
T ss_pred CchHHHHHHHHHHHHHHCCCeEEEEEhhhCCH---H----HHhhCCEEEEEc
Confidence 45566667777777888899999999876532 2 244566665553
No 70
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=51.55 E-value=29 Score=27.48 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=35.3
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhc
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK 289 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~ 289 (372)
-+....+.+|.+.|++.|++.+++|+.. .|.+.+.|.+.+.+
T Consensus 7 ~~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~el~~~l~~ 48 (120)
T 3l78_A 7 SPSCTSCRKARAWLNRHDVVFQEHNIMT-SPLSRDELLKILSY 48 (120)
T ss_dssp CSSCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEeccc-CCCcHHHHHHHHhh
Confidence 3556788999999999999999999876 78899988887764
No 71
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=51.51 E-value=27 Score=27.79 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
+....+.+|.+.|++.|++.+.+|+.. .|.+.+.|.+.+++.+
T Consensus 11 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 53 (120)
T 3fz4_A 11 PKCSTCRRAKAELDDLAWDYDAIDIKK-NPPAASLIRNWLENSG 53 (120)
T ss_dssp SSCHHHHHHHHHHHHHTCCEEEEETTT-SCCCHHHHHHHHHHSC
T ss_pred CCChHHHHHHHHHHHcCCceEEEEecc-CchhHHHHHHHHHHcC
Confidence 456789999999999999999999877 8899999988887653
No 72
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=51.23 E-value=36 Score=29.77 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=36.9
Q ss_pred CCcEEEEEeChhH----HHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEE
Q 017410 238 GSDITLVGWGAQL----SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLL 294 (372)
Q Consensus 238 g~di~ii~~G~~~----~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vi 294 (372)
++++++|.+++.. .......+.+++-|+++.++++.. -+.+.+.+.+++.+.|+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~---~~~~~~~~~l~~ad~I~ 84 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT---ESLGEITTKLRKNDFIY 84 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT---SCHHHHHHHHHHSSEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC---CChHHHHHHHHhCCEEE
Confidence 5789999987752 234445556666699888887665 35566666777777766
No 73
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=50.27 E-value=84 Score=25.73 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=61.9
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCC--HHHHHHHHh----cCCeEEEEcCCCCCCcHHHHHHHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWD--KETVEASVR----KTGRLLISHEAPVTGGFGAEISASI 313 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d--~~~l~~~~~----~~~~vivvEe~~~~GGlg~~i~~~l 313 (372)
.++|++.|......+++++.+--+--.+..+++..=...+ .+.+.+.++ ..+.|+++-|= .||--..++..+
T Consensus 5 giii~sHG~~A~gl~~~~~~i~G~~~~v~av~~~~~~~~~~~~~~i~~~i~~~~~~~~gvliLtDl--~GGSp~n~a~~l 82 (144)
T 3lfh_A 5 FVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEVVRKEVEKIIKEKLQEDKEIIIVVDL--FGGSPFNIALSM 82 (144)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHCCCSSEEEEEECTTCCHHHHHHHHHHHHHHHHTTTCEEEEEESS--SSSHHHHHHHHH
T ss_pred eEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHhhCCCCcEEEEEeC--CCCCHHHHHHHH
Confidence 5789999998888888888775332357777753221111 123444443 34678777664 477656666555
Q ss_pred HHhccccCCCcEEEEeccCCCc--ccccccCCCCcHHHHHHHHh
Q 017410 314 LERCFLRLEAPVARVCGLDTPF--PLVFEPFYMPTKNKASCLES 355 (372)
Q Consensus 314 ~~~~~~~l~~~v~~ig~~~~~~--~~lle~~~l~~~~~~~~i~~ 355 (372)
.+. .++.-+.|-+.|- +.+..+...+-+++++.+.+
T Consensus 83 ~~~------~~v~vItGvNLpMlle~~~~r~~~~l~el~~~~~~ 120 (144)
T 3lfh_A 83 MKE------YDVKVITGINMPMLVELLTSINVYDTTELLENISK 120 (144)
T ss_dssp HHH------HCCEEEESCCHHHHHHHHHSTTTSCHHHHHHHHHH
T ss_pred hcC------CCEEEEeCCCHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 432 2355677766542 22233334566666665544
No 74
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=48.43 E-value=42 Score=32.11 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=25.3
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEe
Q 017410 175 HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFE 208 (372)
Q Consensus 175 ~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~ 208 (372)
.+|++.| .-.|+.++..+++.|++ .++|++|-.
T Consensus 227 G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 227 GIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp TCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4676644 44589999999999987 579999843
No 75
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=47.98 E-value=43 Score=28.92 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 252 IMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 252 ~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
.+..+++.+++.|.+++++++.. +.|.+.+.+.+...+.||+.=--+ .+++...+..++-
T Consensus 35 l~~~~~~~~~~~g~~v~~~dL~~--~~d~~~~~~~l~~AD~iV~~~P~y-~~s~pa~LK~~iD 94 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVRADS--DYDVKAEVQNFLWADVVIWQMPGW-WMGAPWTVKKYID 94 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSS--CCCHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCc--cccHHHHHHHHHhCCEEEEECCcc-ccCCCHHHHHHHH
Confidence 34455666777799999999875 678888888898988877664433 4666666665554
No 76
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=47.75 E-value=85 Score=24.91 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=39.2
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcCCCCC--CcHHHHHHHHHHH
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVT--GGFGAEISASILE 315 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe~~~~--GGlg~~i~~~l~~ 315 (372)
|++-..|...++.|++.|++++++++....+-+ +. +++.+++.=--+.. |.+...+...+..
T Consensus 13 GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~-------l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~ 77 (148)
T 3f6r_A 13 GNTESIAQKLEELIAAGGHEVTLLNAADASAEN-------LADGYDAVLFGCSAWGMEDLEMQDDFLSLFEE 77 (148)
T ss_dssp SHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTT-------TTTTCSEEEEEECEECSSSCEECHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEehhhCCHhH-------hcccCCEEEEEecccCCCCCCCcHHHHHHHHH
Confidence 555566666667777779999999987764322 23 56666665443333 5666666666643
No 77
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=47.38 E-value=10 Score=24.42 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=20.6
Q ss_pred cHHHHHHHHhCCCChHHHHHhhhhcC
Q 017410 346 TKNKASCLESFKVPAQHCCMNLTAHG 371 (372)
Q Consensus 346 ~~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (372)
+++.++++.++||+.+.+..+|.+.+
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~~ 29 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALEKCN 29 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 46778889999999888888877653
No 78
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=47.26 E-value=44 Score=33.61 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=61.2
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcCCeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCC-C
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMGNRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGA-V 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~-~ 158 (372)
|.++++.|. .=...++.|.|++++.-++++.+ .++.. +..+..+. .+... ++ |++++ .-.|. .
T Consensus 416 p~~~~~~g~~g~~G~~l~~AiGaala~~~~vv~i-~GDGsf~~~~~el~-ta~~~--------~l-~~~ivv~NN~~~~~ 484 (568)
T 2c31_A 416 PRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIAV-EGDSAFGFSGMELE-TICRY--------NL-PVTVIIMNNGGIYK 484 (568)
T ss_dssp TTCEEESTTTTCSSCHHHHHHHHHHHHCSCEEEE-EEHHHHHTTGGGHH-HHHHT--------TC-CEEEEEEESSBSSC
T ss_pred CCeEEcCCCCccccccHHHHHHHHhCCCCcEEEE-EcchHhhccHHHHH-HHHHh--------CC-CeEEEEEeCchhHH
Confidence 777777543 12234677778777644555554 55552 22222222 22222 24 55544 33332 1
Q ss_pred CCC-----CC-----CCChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 159 GHG-----GH-----YHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 159 g~~-----G~-----~Hs~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
+.. +. .+ ..|. .+.... |+..+...+..|+...++++++.++|++|
T Consensus 485 ~~~~~~~~~~~~~~~~~-~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 541 (568)
T 2c31_A 485 GNEADPQPGVISCTRLT-RGRYDMMMEAF-GGKGYVANTPAELKAALEEAVASGKPCLI 541 (568)
T ss_dssp SCCCCSBTTBCCTTBCC-CCCHHHHHHTT-TCEEEEESSHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHhhcCCcccCcCC-CCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 110 00 11 1233 344443 67788889999999999999988999998
No 79
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=46.21 E-value=24 Score=28.01 Aligned_cols=48 Identities=10% Similarity=-0.126 Sum_probs=38.3
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (372)
++|.+ -+....+.+|.+.|++.|++.+.+|+.. .|...+.|.+.+++.
T Consensus 6 i~iY~-~p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~ 53 (120)
T 3gkx_A 6 TLFLQ-YPACSTCQKAKKWLIENNIEYTNRLIVD-DNPTVEELKAWIPLS 53 (120)
T ss_dssp CEEEE-CTTCHHHHHHHHHHHHTTCCCEEEETTT-TCCCHHHHHHHHHHH
T ss_pred EEEEE-CCCChHHHHHHHHHHHcCCceEEEeccc-CcCCHHHHHHHHHHc
Confidence 33433 4556789999999999999999999877 788999888877754
No 80
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=46.05 E-value=16 Score=37.87 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=30.7
Q ss_pred HHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 017410 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (372)
Q Consensus 172 ~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~ir 207 (372)
.++.+|.. |+.|.+.+|+..++++|-+++-|++.+
T Consensus 201 ~~~~~P~a-VV~P~s~eeV~~iv~~A~~~~ipVvpr 235 (658)
T 4bby_A 201 MFERIPDI-VLWPTCHDDVVKIVNLACKYNLCIIPI 235 (658)
T ss_dssp CCSCCCSE-EEECCSHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCcCE-EEeeCCHHHHHHHHHHHHHCCCeEEEE
Confidence 45678877 999999999999999999988888775
No 81
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=45.61 E-value=36 Score=31.38 Aligned_cols=64 Identities=14% Similarity=0.015 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCceeEEeecccCC-------CC--HHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 250 LSIMEQACLDAEKEGISCELIDLKTLIP-------WD--KETVEASVRKTGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 250 ~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P-------~d--~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
...+..+++.+++.|.+++++++.-+.. .+ .+.+.+.+...+.+|+.==-| .+++...+..+|-
T Consensus 75 ~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Y-n~sipg~LKn~ID 147 (279)
T 2fzv_A 75 RLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPER-HGQITSVMKAQID 147 (279)
T ss_dssp HHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEE-TTEECHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCcc-ccCcCHHHHHHHH
Confidence 3456667777887899999999988631 22 345677788888877663332 4666666666654
No 82
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=44.91 E-value=29 Score=28.17 Aligned_cols=49 Identities=12% Similarity=-0.032 Sum_probs=35.7
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCC-CHHHHHH
Q 017410 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW-DKETVEA 285 (372)
Q Consensus 237 ~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~-d~~~l~~ 285 (372)
+..++++|+-|+.....+..++.|.+.|.++.++-.|+-.-+ -.+.|.+
T Consensus 17 ~~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~g~R~~~~~~~~~el~~ 66 (142)
T 3lyu_A 17 KFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFEPMVILKEELEK 66 (142)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEGGGCCSHHHHHT
T ss_pred CCCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEEEeCCHHHhhHHHHHHH
Confidence 356899999999999999989988888888888844443332 2455544
No 83
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=44.75 E-value=44 Score=28.01 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=42.0
Q ss_pred ChhHHHHHHHHHHHHhc------CCceeEEeecc--cCCCCH--------------------HHHHHHHhcCCeEEEEcC
Q 017410 247 GAQLSIMEQACLDAEKE------GISCELIDLKT--LIPWDK--------------------ETVEASVRKTGRLLISHE 298 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~------Gi~v~vi~~~~--i~P~d~--------------------~~l~~~~~~~~~vivvEe 298 (372)
|.+...+...++.+++. |.+++++++.. +.|++. +.+.+.+...+.||+.=-
T Consensus 14 ~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP 93 (191)
T 1t0i_A 14 RVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTP 93 (191)
T ss_dssp CSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEE
T ss_pred CchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEec
Confidence 34445566666677765 68899999875 333221 345566777777766544
Q ss_pred CCCCCcHHHHHHHHHHH
Q 017410 299 APVTGGFGAEISASILE 315 (372)
Q Consensus 299 ~~~~GGlg~~i~~~l~~ 315 (372)
-| .+++...+..++-.
T Consensus 94 ~y-~~~~p~~lK~~iD~ 109 (191)
T 1t0i_A 94 QY-NWGYPAALKNAIDR 109 (191)
T ss_dssp CB-TTBCCHHHHHHHHT
T ss_pred eE-CCCCCHHHHHHHHH
Confidence 33 56777777666643
No 84
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=44.70 E-value=26 Score=35.35 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=61.7
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~ 158 (372)
|.+|+..+- .=...++.|.|+|++. -++++.+ .++.. +..+..+. .+... ++ |++++ .-.|..
T Consensus 410 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i-~GDG~~~~~~~~L~-ta~~~--------~l-~~~ivv~nN~~~~ 478 (566)
T 1ozh_A 410 ARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSV-SGDGGFLQSSMELE-TAVRL--------KA-NVLHLIWVDNGYN 478 (566)
T ss_dssp CSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEE-EEHHHHHHHTTHHH-HHHHH--------TC-CEEEEEEECSBCH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEE-EcChHHhccHHHHH-HHHHh--------CC-CcEEEEEECCchh
Confidence 677876431 1123567788887753 3566654 56653 33333332 23322 24 55443 332221
Q ss_pred --C------CCC---CCCChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 159 --G------HGG---HYHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 159 --g------~~G---~~Hs~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
+ .++ ......|. .+.+.. |+..+...++.|+...++++++.++|++|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li 537 (566)
T 1ozh_A 479 MVAIQEEKKYQRLSGVEFGPMDFKAYAESF-GAKGFAVESAEALEPTLRAAMDVDGPAVV 537 (566)
T ss_dssp HHHHHHHHHHSSCCSCBCCCCCHHHHHHTT-TSEEEECCSGGGHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHHhcCCCccCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 011 11111233 455554 77788889999999999999999999998
No 85
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=44.62 E-value=22 Score=27.86 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=37.8
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
++|.+. +....+.+|.+.|++.|++.+.+|+.. .|++.+.+.+.+++.+
T Consensus 2 i~iY~~-~~C~~C~kak~~L~~~gi~~~~~di~~-~~~~~~~l~~~~~~~g 50 (114)
T 1rw1_A 2 YVLYGI-KACDTMKKARTWLDEHKVAYDFHDYKA-VGIDREHLRRWCAEHG 50 (114)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHTTCCEEEEEHHH-HCCCHHHHHHHHHHHC
T ss_pred EEEEEC-CCChHHHHHHHHHHHCCCceEEEeecC-CCCCHHHHHHHHHhCC
Confidence 344443 455789999999999999999999875 6888888887776543
No 86
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=43.99 E-value=25 Score=27.82 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=45.7
Q ss_pred CCcEEEEEeC----hhHHHHHHHHHHHHhcCC-ceeEEeecccCCCCHHH---HHHHH-hcCCeEEEEcCCCCCCcHHHH
Q 017410 238 GSDITLVGWG----AQLSIMEQACLDAEKEGI-SCELIDLKTLIPWDKET---VEASV-RKTGRLLISHEAPVTGGFGAE 308 (372)
Q Consensus 238 g~di~ii~~G----~~~~~a~~Aa~~L~~~Gi-~v~vi~~~~i~P~d~~~---l~~~~-~~~~~vivvEe~~~~GGlg~~ 308 (372)
..+++|++.+ +....+.+|.+.|++.|+ +.+.+++.. |.+. +.+.. ..+=..|+|+... .||+...
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~----d~~~~~~l~~~tg~~tvP~vfI~g~~-IGG~d~l 93 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD----DPELRQGIKDYSNWPTIPQVYLNGEF-VGGCDIL 93 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSS----CHHHHHHHHHHHTCCSSCEEEETTEE-EESHHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCC----CHHHHHHHHHHhCCCCcCeEEECCEE-EeChHHH
Confidence 4579999988 367889999999999999 499999863 3332 32221 2234667787664 6888653
No 87
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=43.79 E-value=48 Score=28.53 Aligned_cols=65 Identities=8% Similarity=0.133 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCH----------HHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHH
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDK----------ETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~----------~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l 313 (372)
|....+.+++..+.++|.+++++++.-+-.|+. +.+.+.++..+.+|++---| .|++...+...|
T Consensus 16 S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY-n~s~pg~LKn~i 90 (190)
T 3u7r_A 16 SLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY-NRSYPGMIKNAI 90 (190)
T ss_dssp CHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB-TTBCCHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh-cccCCHHHHHHH
Confidence 344455555666666789999999876532332 34677888888887763332 455555554444
No 88
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=43.78 E-value=28 Score=27.66 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=39.2
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
++|.+ -+....+.+|.+.|++.|++.+.+|+.. .|...+.|.+.++..+
T Consensus 7 i~iY~-~p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 55 (121)
T 3rdw_A 7 VTIYH-NPRCSKSRETLALVEQQGITPQVVLYLE-TPPSVDKLKELLQQLG 55 (121)
T ss_dssp CEEEC-CTTCHHHHHHHHHHHTTTCCCEEECTTT-SCCCHHHHHHHHHHTT
T ss_pred EEEEE-CCCCHHHHHHHHHHHHcCCCcEEEeecc-CCCcHHHHHHHHHhcC
Confidence 44443 3456789999999999999999999887 7889999888877664
No 89
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=43.52 E-value=43 Score=28.53 Aligned_cols=125 Identities=10% Similarity=-0.024 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhHhCCCcEEEEecccccccccccCCCCCcccc-CCc---eEEeeeCCcEEEEEeChhHHHHHHHHHHHHh
Q 017410 187 PRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLP-LSE---AEVIREGSDITLVGWGAQLSIMEQACLDAEK 262 (372)
Q Consensus 187 ~~e~~~~l~~a~~~~~Pv~ir~p~~l~r~~~~~v~~~~~~~~-~Gk---~~v~~~g~di~ii~~G~~~~~a~~Aa~~L~~ 262 (372)
-+++.+++-+|+..++-+|++-...+.--..+.++. ..+++ .++ ...++++.-+.|++....-..+.+.+..+++
T Consensus 24 I~~AA~llaqai~~~g~IyvfG~Ghs~~~~~e~~~~-~e~l~~~~~~~~~~~i~~~D~vii~S~Sg~n~~~ie~A~~ake 102 (170)
T 3jx9_A 24 LFDVVRLLAQALVGQGKVYLDAYGEFEGLYPMLSDG-PDQMKRVTKIKDHKTLHAVDRVLIFTPDTERSDLLASLARYDA 102 (170)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECGGGGGGTHHHHTS-TTCCTTEEECCTTCCCCTTCEEEEEESCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcHHHHHHHHHcc-cCCccchhhhhhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367888999999999999995433211000000110 11110 000 1134555556677776667778999999999
Q ss_pred cCCceeEEeecccCCCCHH--HHHHHHhc-CCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 263 EGISCELIDLKTLIPWDKE--TVEASVRK-TGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 263 ~Gi~v~vi~~~~i~P~d~~--~l~~~~~~-~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
+|+++-.|-- ..+=+.. .|.+.+.+ .+.++-.|++...|..+...+.++.
T Consensus 103 ~G~~vIaITs--~~~~~~~~~~L~d~an~~p~gll~~e~g~r~g~~Sti~~~~i~ 155 (170)
T 3jx9_A 103 WHTPYSIITL--GDVTETLERSIAPLALKFDKGLLPAEDGSRHGLPSLALGAFLL 155 (170)
T ss_dssp HTCCEEEEES--SCCCTTGGGSSSCEECCCCSCSEECTTSCEECCCHHHHHHHHH
T ss_pred CCCcEEEEeC--cchhccccCcHHHHHhCCCCCceECCCCCEechhHHHHHHHHH
Confidence 9977655554 2222111 11111111 1335666776666665554444443
No 90
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=43.51 E-value=1.2e+02 Score=24.31 Aligned_cols=109 Identities=13% Similarity=0.055 Sum_probs=61.2
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCC--HHHHHHHHhcC---CeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWD--KETVEASVRKT---GRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d--~~~l~~~~~~~---~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
.++|++.|......+++++.+--+--.+..+++..=...+ .+.+.+.+++. +.|+++-|= .||--..++..+.
T Consensus 3 ~iii~sHG~~A~gl~~~~~~i~G~~~~v~ai~~~~~~~~~~~~~~i~~~i~~~~~~~gvliLtDl--~GGSp~n~a~~~~ 80 (135)
T 1pdo_A 3 AIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDT--WGGSPFNAASRIV 80 (135)
T ss_dssp EEEEECSBTHHHHHHHHHHHHHCCCSSEEEECBCTTCCHHHHHHHHHHHHTTSCCTTCEEEEESS--TTSHHHHHHHHHH
T ss_pred eEEEEeChHHHHHHHHHHHHHcCCcCCEEEEEeeCCCCHHHHHHHHHHHHHhcCCCCCEEEEEEC--CCCCHHHHHHHHH
Confidence 4789999998888888888875322356666654322211 23456666653 457776654 3665455554544
Q ss_pred HhccccCCCcEEEEeccCCCc--ccccccC-CCCcHHHHHHHHh
Q 017410 315 ERCFLRLEAPVARVCGLDTPF--PLVFEPF-YMPTKNKASCLES 355 (372)
Q Consensus 315 ~~~~~~l~~~v~~ig~~~~~~--~~lle~~-~l~~~~~~~~i~~ 355 (372)
+. ..++.-+.+-+.|- +....+. +.+-+++++.+.+
T Consensus 81 ~~-----~~~v~vi~GvNlpmlle~~~~~~~~~~l~el~~~~~~ 119 (135)
T 1pdo_A 81 VD-----KEHYEVIAGVNIPMLVETLMARDDDPSFDELVALAVE 119 (135)
T ss_dssp TT-----CTTEEEEESCCHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hc-----cCCEEEEeCCCHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 32 23577777766541 1112221 4555566555443
No 91
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=43.40 E-value=50 Score=34.67 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHHcCCCCcEEEee---CCHHHHHHHHHHhHhCCCcEEEEecc
Q 017410 171 AFFCHVPGLKVVIP---RSPRQAKGLLLSCIRDPNPVVFFEPK 210 (372)
Q Consensus 171 a~l~~iP~l~V~~P---sd~~e~~~~l~~a~~~~~Pv~ir~p~ 210 (372)
..++.. |+.++.| .|..++..+++.|.+.++|++|....
T Consensus 244 ~~~~a~-G~~~~~~vdG~d~~~l~~Al~~A~~~~~P~lI~v~T 285 (711)
T 3uk1_A 244 KRFEAY-GWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLICCKT 285 (711)
T ss_dssp HHHHHT-TCEEEEEEETTCHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred HHHHHc-CCcEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 456554 6777665 58899999999998889999995543
No 92
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=43.27 E-value=42 Score=34.07 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=28.3
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC---CCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD---PNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~---~~Pv~i 206 (372)
.+.... |+..+...++.|+...++++++. ++|++|
T Consensus 496 ~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~gp~li 533 (590)
T 1v5e_A 496 KIAEAQ-GAKGFTVSRIEDMDRVMAEAVAANKAGHTVVI 533 (590)
T ss_dssp HHHHHT-TSEEEEECBHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHc-CCEEEEECCHHHHHHHHHHHHHhcCCCCCEEE
Confidence 344443 66777778999999999999987 899998
No 93
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=42.79 E-value=73 Score=31.91 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=29.2
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.... |+..+...++.|+...++++++.++|++|
T Consensus 506 ~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~li 540 (563)
T 2uz1_A 506 GVAAAF-GADGYHVDSVESFSAALAQALAHNRPACI 540 (563)
T ss_dssp HHHHHT-TCEEEEECSHHHHHHHHHHHHHSSSCEEE
T ss_pred HHHHHc-CCeEEEeCCHHHHHHHHHHHHHCCCCEEE
Confidence 344444 67778889999999999999999999998
No 94
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=42.51 E-value=43 Score=26.11 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=35.5
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHH--HHHHHHH
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAE--ISASILE 315 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~--i~~~l~~ 315 (372)
|++-..|...++.|++.|.+++++++... |.+. +.+++.+++.=--+ .+|.... +...+..
T Consensus 11 GnT~~~a~~i~~~l~~~g~~v~~~~~~~~---~~~~----l~~~d~vi~g~p~y-~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 11 GNTEAMANEIEAAVKAAGADVESVRFEDT---NVDD----VASKDVILLGCPAM-GSEELEDSVVEPFFTD 73 (137)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEETTSC---CHHH----HHTCSEEEEECCCB-TTTBCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCeEEEEEcccC---CHHH----HhcCCEEEEEcccc-CCCCCCHHHHHHHHHH
Confidence 44455566666667777999999986653 3332 44667766654333 3444333 5554443
No 95
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=42.50 E-value=50 Score=28.48 Aligned_cols=62 Identities=8% Similarity=-0.031 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCceeEEeecccCC---CCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHH
Q 017410 253 MEQACLDAEKEGISCELIDLKTLIP---WDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILE 315 (372)
Q Consensus 253 a~~Aa~~L~~~Gi~v~vi~~~~i~P---~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~ 315 (372)
+...++.+++.|.+++++++....| .|.+.+.+.+...+.||+.=--+ .+++...+..++-.
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~lK~~iDr 83 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLLKQWLDE 83 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHHHHHHHH
Confidence 4444566777788999999988765 56777778888888877764443 57777777766654
No 96
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=42.47 E-value=17 Score=36.27 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=28.5
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.+.. |+..+...++.|+...++++++.++|++|
T Consensus 485 ~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~li 519 (528)
T 1q6z_A 485 ALAKGY-GVQALKADNLEQLKGSLQEALSAKGPVLI 519 (528)
T ss_dssp HHHHHH-TCEEEEESSHHHHHHHHHHHHTCSSCEEE
T ss_pred HHHHHc-CCeEEEeCCHHHHHHHHHHHHHCCCcEEE
Confidence 344443 66777888999999999999999999998
No 97
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=42.44 E-value=50 Score=31.97 Aligned_cols=26 Identities=8% Similarity=-0.047 Sum_probs=20.6
Q ss_pred eeCCHHHHHHHHHHhHh----CCCcEEEEe
Q 017410 183 IPRSPRQAKGLLLSCIR----DPNPVVFFE 208 (372)
Q Consensus 183 ~Psd~~e~~~~l~~a~~----~~~Pv~ir~ 208 (372)
.-.|+.++..+++.|++ .++|++|-.
T Consensus 254 dG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 254 DGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34578999999998886 589999843
No 98
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=41.83 E-value=77 Score=28.03 Aligned_cols=107 Identities=8% Similarity=-0.016 Sum_probs=57.4
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHh---cCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHH---HHHHHH
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEK---EGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFG---AEISAS 312 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~---~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg---~~i~~~ 312 (372)
.+-++|-|||+++.+.+.|+.|.+ .|+++.|+++....+ +. +.+.+.+|++--.+-.|-+- ..+...
T Consensus 40 ~~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~---~~----l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~ 112 (219)
T 3hr4_A 40 RVRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRL---SC----LEEERLLLVVTSTFGNGDCPGNGEKLKKS 112 (219)
T ss_dssp SCEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCG---GG----GGTCSEEEEEEECBTTTBCCGGGHHHHHH
T ss_pred CCcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCH---hH----hccCCeEEEEEeccCCCcCCHHHHHHHHH
Confidence 344567789999888888887765 378888888765432 22 34566777664444233332 234444
Q ss_pred HHHhccccC-CCcEEEEeccCCCcccccccCCCCcHHHHHHHHhCC
Q 017410 313 ILERCFLRL-EAPVARVCGLDTPFPLVFEPFYMPTKNKASCLESFK 357 (372)
Q Consensus 313 l~~~~~~~l-~~~v~~ig~~~~~~~~lle~~~l~~~~~~~~i~~~~ 357 (372)
|.+... .+ ..++.-+|.-|..+ +.|+-....+-+++.+.|
T Consensus 113 L~~~~~-~l~~~~~aVfGlGdssY----~~F~~a~k~ld~~L~~lG 153 (219)
T 3hr4_A 113 LFMLKE-LNNKFRYAVFGLGSSMY----PRFCAFAHDIDQKLSHLG 153 (219)
T ss_dssp HHHCCC-CSSCCEEEEEEEECTTS----SSTTHHHHHHHHHHHHHT
T ss_pred HHhcch-hhcCCEEEEEeCCCcch----HHHhHHHHHHHHHHHHCC
Confidence 444210 01 23344454434333 244444455555555443
No 99
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=41.79 E-value=24 Score=28.02 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=44.7
Q ss_pred CCcEEEEEeC----hhHHHHHHHHHHHHhcCCc---eeEEeecccCCCCHHH---HHHHH-hcCCeEEEEcCCCCCCcHH
Q 017410 238 GSDITLVGWG----AQLSIMEQACLDAEKEGIS---CELIDLKTLIPWDKET---VEASV-RKTGRLLISHEAPVTGGFG 306 (372)
Q Consensus 238 g~di~ii~~G----~~~~~a~~Aa~~L~~~Gi~---v~vi~~~~i~P~d~~~---l~~~~-~~~~~vivvEe~~~~GGlg 306 (372)
.++++|++.+ +....+.+|.+.|++.|++ ...+++.. +.+. +.+.. ..+=..|+|+... .||+.
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~----~~~~~~~l~~~sg~~tvP~vfI~g~~-iGG~d 89 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE----DPELREGIKEFSEWPTIPQLYVNKEF-IGGCD 89 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT----CHHHHHHHHHHHTCCSSCEEEETTEE-EESHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC----CHHHHHHHHHHhCCCCCCeEEECCEE-EecHH
Confidence 4678899888 3678899999999999998 88888753 3332 22211 1233567787654 69986
Q ss_pred HH
Q 017410 307 AE 308 (372)
Q Consensus 307 ~~ 308 (372)
..
T Consensus 90 ~l 91 (121)
T 3gx8_A 90 VI 91 (121)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 100
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=41.54 E-value=61 Score=25.88 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=37.4
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (372)
++|.+ -+....|.+|.+.|++.|++.+++|+.. .|.+.+.+.+.+++.
T Consensus 3 i~lY~-~~~C~~C~ka~~~L~~~gi~y~~~di~~-~~~~~~el~~~l~~~ 50 (132)
T 1z3e_A 3 VTLYT-SPSCTSCRKARAWLEEHEIPFVERNIFS-EPLSIDEIKQILRMT 50 (132)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHTC
T ss_pred EEEEe-CCCChHHHHHHHHHHHcCCceEEEEccC-CCccHHHHHHHHHHc
Confidence 34443 3556889999999999999999999875 778888888877643
No 101
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=40.43 E-value=32 Score=27.09 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=38.5
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
++|.+. +....|.+|.+.|++.|++.+++|+.. .|.+.+.+.+.+++.+
T Consensus 7 i~iY~~-~~C~~C~ka~~~L~~~gi~y~~~di~~-~~~~~~~l~~~~~~~g 55 (120)
T 2kok_A 7 VTIYGI-KNCDTMKKARIWLEDHGIDYTFHDYKK-EGLDAETLDRFLKTVP 55 (120)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHHTCCEEEEEHHH-HCCCHHHHHHHHHHSC
T ss_pred EEEEEC-CCChHHHHHHHHHHHcCCcEEEEeeeC-CCCCHHHHHHHHHHcC
Confidence 555544 445788999999999999999999875 5888888888777655
No 102
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=39.26 E-value=40 Score=24.86 Aligned_cols=67 Identities=7% Similarity=0.068 Sum_probs=40.8
Q ss_pred cEEEEEeChhHHHH------HHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh---cCCeEEEEcCCCCCCcHHHHH
Q 017410 240 DITLVGWGAQLSIM------EQACLDAEKEGISCELIDLKTLIPWDKETVEASVR---KTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 240 di~ii~~G~~~~~a------~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~---~~~~vivvEe~~~~GGlg~~i 309 (372)
+++|.++ +....+ .+|.+.|++.|++.+.+|+.. .|-..+.+.+... .+=+.|++++.. .||+-...
T Consensus 3 ~v~ly~~-~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~-~~~~~~~l~~~~g~~~~~vP~ifi~g~~-igG~d~l~ 78 (93)
T 1t1v_A 3 GLRVYST-SVTGSREIKSQQSEVTRILDGKRIQYQLVDISQ-DNALRDEMRTLAGNPKATPPQIVNGNHY-CGDYELFV 78 (93)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTS-CHHHHHHHHHHTTCTTCCSCEEEETTEE-EEEHHHHH
T ss_pred CEEEEEc-CCCCCchhhHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHHhCCCCCCCCEEEECCEE-EeCHHHHH
Confidence 4555554 333444 788888999999999999874 2211233443332 123677887764 68885543
No 103
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=39.15 E-value=31 Score=35.17 Aligned_cols=110 Identities=15% Similarity=0.038 Sum_probs=62.4
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~ 158 (372)
|.+|++.|- .-...++.|.|+|++. -++++.+ .++.. +..+..+. .++.. ++ |++++ .-.+..
T Consensus 432 ~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i-~GDGs~~~~~~~L~-ta~~~--------~l-~~~ivv~NN~~~~ 500 (616)
T 2pan_A 432 DRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAI-SGDFDFQFLIEELA-VGAQF--------NI-PYIHVLVNNAYLG 500 (616)
T ss_dssp TTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEE-EEHHHHHHTGGGHH-HHHHT--------TC-CCEEEEEECSBCH
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchhhhCCHHHHH-HHHHh--------CC-CeEEEEEECCcch
Confidence 678999654 2233778888888763 3566664 56653 33333332 23322 24 54433 332221
Q ss_pred ----------CC-------CCC---CCC--hhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEE
Q 017410 159 ----------GH-------GGH---YHS--QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (372)
Q Consensus 159 ----------g~-------~G~---~Hs--~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i 206 (372)
+. .+. .|. ..|. .+.+.. |+..+...++.|+...++++++ .++|++|
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lI 574 (616)
T 2pan_A 501 LIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVV 574 (616)
T ss_dssp HHHHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHT-TCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHhcCCccccccccccccccCCCCCCCHHHHHHHc-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEE
Confidence 00 010 110 1233 344443 6677777899999999999998 7899998
No 104
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=38.30 E-value=1.1e+02 Score=31.77 Aligned_cols=39 Identities=8% Similarity=0.125 Sum_probs=29.3
Q ss_pred HHHcCCCCcEEEeeC----CHHHHHHHHHHhHh-CCCcEEEEecc
Q 017410 171 AFFCHVPGLKVVIPR----SPRQAKGLLLSCIR-DPNPVVFFEPK 210 (372)
Q Consensus 171 a~l~~iP~l~V~~Ps----d~~e~~~~l~~a~~-~~~Pv~ir~p~ 210 (372)
..++.. |+.++.+. |..++..+++.|.+ .++|++|....
T Consensus 216 ~~~~a~-G~~~~~~vdG~~d~~~l~~al~~a~~~~~~P~lI~~~T 259 (675)
T 1itz_A 216 TRFEAL-GWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTT 259 (675)
T ss_dssp HHHHHT-TCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred HHHHhC-CCEEEEEecCCCCHHHHHHHHHHHHHCCCCeEEEEEee
Confidence 466664 88887443 78899999999987 58999985533
No 105
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=38.08 E-value=75 Score=26.57 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=43.2
Q ss_pred eChhHHHHHHHHHHHHhcCCceeEEeecccCCC----------C----HHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHH
Q 017410 246 WGAQLSIMEQACLDAEKEGISCELIDLKTLIPW----------D----KETVEASVRKTGRLLISHEAPVTGGFGAEISA 311 (372)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~----------d----~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~ 311 (372)
+|++-..+..+++.|++.|.+++++++....|. | .+. .+.+..++.||+.=--+ .|++...+..
T Consensus 14 ~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gsP~y-~~~~~~~lk~ 91 (199)
T 2zki_A 14 YGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGSPTR-YGNMAGGLKT 91 (199)
T ss_dssp SSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEEECB-TTBCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEECCcc-ccCccHHHHH
Confidence 455556677777778888999999998775111 0 111 33455677776654443 5777777776
Q ss_pred HHHH
Q 017410 312 SILE 315 (372)
Q Consensus 312 ~l~~ 315 (372)
++..
T Consensus 92 ~ld~ 95 (199)
T 2zki_A 92 FLDT 95 (199)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6644
No 106
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=38.02 E-value=29 Score=34.97 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=26.6
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 178 GLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 178 ~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
|+.-+...++.|+...++.+++.++|++|
T Consensus 505 G~~~~~v~~~~~l~~al~~a~~~~gp~li 533 (556)
T 3hww_A 505 ELKYHRPQNWQELETAFADAWRTPTTTVI 533 (556)
T ss_dssp TCEEECCSSHHHHHHHHHHHTTSSSEEEE
T ss_pred CCcEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 67778889999999999999999999998
No 107
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=37.43 E-value=31 Score=29.56 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=46.0
Q ss_pred cEEEEE---eChhHHHHHHHHHHHHhcCCceeEEeecccCCC-----------------CH-HHHHHHHhcCCeEEEEcC
Q 017410 240 DITLVG---WGAQLSIMEQACLDAEKEGISCELIDLKTLIPW-----------------DK-ETVEASVRKTGRLLISHE 298 (372)
Q Consensus 240 di~ii~---~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~-----------------d~-~~l~~~~~~~~~vivvEe 298 (372)
+++||. +|.+...+...++.|++.|.+++++++....|. |. +.+.+.+..++.||+.=-
T Consensus 8 kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gsP 87 (211)
T 1ydg_A 8 KLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSP 87 (211)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEEE
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEcC
Confidence 444443 355566677777788888999999998775110 10 123345666777666543
Q ss_pred CCCCCcHHHHHHHHHHH
Q 017410 299 APVTGGFGAEISASILE 315 (372)
Q Consensus 299 ~~~~GGlg~~i~~~l~~ 315 (372)
-+ .|++...+..++..
T Consensus 88 ~y-~~~~~~~lk~~ld~ 103 (211)
T 1ydg_A 88 TR-FGGATSQMRAFIDT 103 (211)
T ss_dssp EE-TTEECHHHHHHHHT
T ss_pred cc-ccCccHHHHHHHHH
Confidence 33 57777777666644
No 108
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=37.22 E-value=92 Score=32.28 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=29.6
Q ss_pred HHHcCCCCcEEEee---CCHHHHHHHHHHhHh-CCCcEEEEecc
Q 017410 171 AFFCHVPGLKVVIP---RSPRQAKGLLLSCIR-DPNPVVFFEPK 210 (372)
Q Consensus 171 a~l~~iP~l~V~~P---sd~~e~~~~l~~a~~-~~~Pv~ir~p~ 210 (372)
..++.. ||.++-+ .|..++..+++.|.+ .++|++|....
T Consensus 205 ~~~~a~-G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~~~T 247 (663)
T 3kom_A 205 ERFRAY-GWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCKT 247 (663)
T ss_dssp HHHHHT-TCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEEEEC
T ss_pred HHHHHC-CCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 456665 7887733 378999999999998 58999996543
No 109
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=36.98 E-value=39 Score=34.25 Aligned_cols=110 Identities=10% Similarity=0.029 Sum_probs=61.6
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcC-CeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCCC
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAV 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~~ 158 (372)
|.+|++.|- .=...++.|.|+|++. -++++.+ .++.. +..+..+. .+... ++ |++++ .-++..
T Consensus 416 ~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i-~GDGs~~~~~~~L~-ta~~~--------~l-~~~ivv~NN~~~~ 484 (590)
T 1ybh_A 416 PRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDI-DGDGSFIMNVQELA-TIRVE--------NL-PVKVLLLNNQHLG 484 (590)
T ss_dssp TTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEE-EEHHHHHHTTTHHH-HHHHT--------TC-CEEEEEEECSBCH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEE-EccchhhccHHHHH-HHHHh--------CC-CcEEEEEECCcch
Confidence 788998753 2333778888888763 3566654 56653 33333332 23322 24 64443 333321
Q ss_pred ----------CCC--C----CCC----ChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 159 ----------GHG--G----HYH----SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 159 ----------g~~--G----~~H----s~~d~-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
+.. + ..| ...|. .+.+.. |+..+...++.|+...++++++.++|++|
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li 552 (590)
T 1ybh_A 485 MVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAAC-GIPAARVTKKADLREAIQTMLDTPGPYLL 552 (590)
T ss_dssp HHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHT-TCCEEEECBHHHHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHHhcCCccccccccccccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 000 0 100 01133 333332 45556668999999999999999999998
No 110
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=36.82 E-value=1.1e+02 Score=31.10 Aligned_cols=27 Identities=11% Similarity=-0.135 Sum_probs=22.8
Q ss_pred EeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 017410 182 VIPRSPRQAKGLLLSCIRDPNPVVFFE 208 (372)
Q Consensus 182 ~~Psd~~e~~~~l~~a~~~~~Pv~ir~ 208 (372)
+...|..++..++++|.+.++|++|-.
T Consensus 254 vdG~d~~~l~~al~~A~~~~gP~lI~v 280 (621)
T 2o1s_A 254 VDGHDVLGLITTLKNMRDLKGPQFLHI 280 (621)
T ss_dssp EETTCHHHHHHHHHHHHHSCSEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 345689999999999999899999854
No 111
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=36.74 E-value=1.1e+02 Score=31.51 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=29.7
Q ss_pred HHHcCCCCcEEEeeC---CHHHHHHHHHHhHhCCCcEEEEecc
Q 017410 171 AFFCHVPGLKVVIPR---SPRQAKGLLLSCIRDPNPVVFFEPK 210 (372)
Q Consensus 171 a~l~~iP~l~V~~Ps---d~~e~~~~l~~a~~~~~Pv~ir~p~ 210 (372)
..++.. |+.++ +. |..++..+++.|.+.++|++|....
T Consensus 200 ~~~~a~-G~~~~-~vdGhd~~~l~~al~~A~~~~~P~lI~v~T 240 (632)
T 3l84_A 200 MRFEAQ-GFEVL-SINGHDYEEINKALEQAKKSTKPCLIIAKT 240 (632)
T ss_dssp HHHHHT-TCEEE-EEETTCHHHHHHHHHHHHTCSSCEEEEEEC
T ss_pred HHHHHc-CCeEE-EEeeCCHHHHHHHHHHHHhCCCCEEEEEee
Confidence 466665 78887 44 7899999999998889999986543
No 112
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=36.17 E-value=26 Score=35.74 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=25.6
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 178 GLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 178 ~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
|+..+...++.|+...++++++.++|++|
T Consensus 546 G~~~~~v~~~~el~~al~~a~~~~gp~li 574 (604)
T 2x7j_A 546 GGTYSCPASWDEFKTAYAPQADKPGLHLI 574 (604)
T ss_dssp TCEEECCSSHHHHHHHCCCCCSSCCEEEE
T ss_pred CCeEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 67788889999999999988888899988
No 113
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=35.13 E-value=32 Score=28.75 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=24.0
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEee
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~ 272 (372)
.||+||+-|..- +.|+-.|.+.|++|.|++-
T Consensus 3 ~dV~IIGaGpaG---L~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAG---LSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHHH---HHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHH---HHHHHHHHHCCCCEEEEEC
Confidence 379999988753 3355678888999999984
No 114
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=34.87 E-value=25 Score=27.92 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~ 291 (372)
+....+.+|.+.|++.|++.+.+|+.. .|.+.+.|.+.+++.+
T Consensus 12 p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~t~~eL~~~l~~~g 54 (119)
T 3f0i_A 12 PKCSKSRETLALLENQGIAPQVIKYLE-TSPSVEELKRLYQQLG 54 (119)
T ss_dssp TTCHHHHHHHHHHHHTTCCCEEECHHH-HCCCHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHcCCceEEEEecc-CcCcHHHHHHHHHHcC
Confidence 456789999999999999999999877 7888988888776543
No 115
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=34.56 E-value=37 Score=25.54 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=42.9
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-----cCCeEEEEcCCCCCCcHHH
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-----KTGRLLISHEAPVTGGFGA 307 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-----~~~~vivvEe~~~~GGlg~ 307 (372)
.+++|.+ -+....|.+|...|++.|++.+.+++....+-+.+.+.+.++ .+=.+++++++...||+..
T Consensus 22 ~~v~ly~-~~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg~~~ 94 (103)
T 3nzn_A 22 GKVIMYG-LSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVGFKE 94 (103)
T ss_dssp SCEEEEE-CSSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEESCCH
T ss_pred CeEEEEc-CCCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEcCCH
Confidence 4566654 456688999999999999999999987654322233333222 2235677766344677644
No 116
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=34.16 E-value=1e+02 Score=25.61 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=36.9
Q ss_pred cEEEEEeChhH----HHHHHHHHHHHhcC-CceeEEeecccCCCCHHHHHHHHhcCCeEEEEcC
Q 017410 240 DITLVGWGAQL----SIMEQACLDAEKEG-ISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (372)
Q Consensus 240 di~ii~~G~~~----~~a~~Aa~~L~~~G-i~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe 298 (372)
+++|+++|+.. ..-..++++|+++. -++++++..+.-+--...|.+. +++++|+||-
T Consensus 5 ~~lVlGiGN~l~gDDG~G~~v~~~L~~~~~~~v~vid~gt~~~~l~~~l~~~--~~d~lIiVDA 66 (159)
T 2e85_A 5 TDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIREL--RPTRLLIVDA 66 (159)
T ss_dssp CEEEEEECCGGGGGGGHHHHHHHHHHHSCCTTCEEEECTTCSGGGHHHHHHH--CCSEEEEEEE
T ss_pred CEEEEEECCcccccccHHHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcC--CCCEEEEEEe
Confidence 46899999875 34667788887653 2588999888543222223221 4688888875
No 117
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=34.04 E-value=92 Score=30.20 Aligned_cols=33 Identities=9% Similarity=-0.087 Sum_probs=23.5
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEe
Q 017410 175 HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFE 208 (372)
Q Consensus 175 ~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir~ 208 (372)
.+|.+. +.=.|+.++..+++.|++ .++|++|-.
T Consensus 267 G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 267 GIASLR-VDGNDFVAVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp TCEEEE-EETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CCeEEE-EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 455553 344578899999998886 588999843
No 118
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=33.93 E-value=74 Score=29.88 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHH
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l 313 (372)
++-..|...++.|++.|++++++++. ..+.+.+.+.+..++.|++.=--+ .|+....+...+
T Consensus 269 nT~~la~~i~~~l~~~g~~v~~~~~~---~~~~~~~~~~l~~~d~iiigsP~y-~~~~~~~~k~~l 330 (404)
T 2ohh_A 269 STRKMAHAIAEGAMSEGVDVRVYCLH---EDDRSEIVKDILESGAIALGAPTI-YDEPYPSVGDLL 330 (404)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEETT---TSCHHHHHHHHHTCSEEEEECCEE-TTEECTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC---CCCHHHHHHHHHHCCEEEEECccc-cccchHHHHHHH
Confidence 34455666667777778899998865 456677777787888777653322 455544455444
No 119
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=33.84 E-value=29 Score=29.37 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCceeEEeecccCCCC-----------HHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHH
Q 017410 253 MEQACLDAEKEGISCELIDLKTLIPWD-----------KETVEASVRKTGRLLISHEAPVTGGFGAEISASILE 315 (372)
Q Consensus 253 a~~Aa~~L~~~Gi~v~vi~~~~i~P~d-----------~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~ 315 (372)
+...++.++ .|.+++++++..+..++ .+.+.+.+..++.||+.=-- ..+++...+..++..
T Consensus 26 a~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~-y~~~~p~~lK~~iD~ 97 (193)
T 1rtt_A 26 LQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPE-YNYSMAGVLKNAIDW 97 (193)
T ss_dssp HHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCE-ETTEECHHHHHHHHH
T ss_pred HHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccc-cccCcCHHHHHHHHH
Confidence 333444444 57888999987743332 23455566667766655333 246666666555543
No 120
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=33.11 E-value=1.3e+02 Score=23.99 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=24.0
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeec
Q 017410 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (372)
Q Consensus 238 g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 273 (372)
..+++|+++|..... .++.|.+.|.++.+++..
T Consensus 3 ~~~vlI~G~G~vG~~---la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAIN---TILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHH---HHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 346888888876654 345677789999999864
No 121
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=32.84 E-value=80 Score=26.28 Aligned_cols=64 Identities=9% Similarity=0.215 Sum_probs=38.1
Q ss_pred ChhHHHHHHHHHHHHh-cCCceeEEeecccCCCCHHHH--------------HHHHhcCCeEEEEcCCCCCCcHHHHHHH
Q 017410 247 GAQLSIMEQACLDAEK-EGISCELIDLKTLIPWDKETV--------------EASVRKTGRLLISHEAPVTGGFGAEISA 311 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~i~P~d~~~l--------------~~~~~~~~~vivvEe~~~~GGlg~~i~~ 311 (372)
|++-..+...++.|++ .|.+++++++....| .... .+.+..++.||+.=--+ .|++...+..
T Consensus 13 g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~~~~~~~lk~ 89 (198)
T 3b6i_A 13 GHIETMARAVAEGASKVDGAEVVVKRVPETMP--PQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTR-FGNMSGQMRT 89 (198)
T ss_dssp SHHHHHHHHHHHHHHTSTTCEEEEEECCCCSC--HHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEE-TTEECHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCEEEEEEccccCc--hhhhhhcccccccCchhhHHHHHHCCEEEEEeChh-cCCchHHHHH
Confidence 5566667777778887 899999999886522 1110 23344556555443322 4666555555
Q ss_pred HH
Q 017410 312 SI 313 (372)
Q Consensus 312 ~l 313 (372)
++
T Consensus 90 ~l 91 (198)
T 3b6i_A 90 FL 91 (198)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 122
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=32.56 E-value=70 Score=29.98 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=41.9
Q ss_pred EEEEEeChhH----HHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHH
Q 017410 241 ITLVGWGAQL----SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (372)
Q Consensus 241 i~ii~~G~~~----~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l 313 (372)
-++|.++|+. ..|...++.|+++|.+++++++. ..+.+.+.+.+..++.+++.--.+ .++....+...+
T Consensus 253 ~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~d~ii~g~p~y-~~~~~~~~~~~l 325 (398)
T 1ycg_A 253 KAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLS---VSDRNDVIKEILDARAVLVGSPTI-NNDILPVVSPLL 325 (398)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGG---GSCHHHHHHHHHHCSEEEEECCCB-TTBCCGGGHHHH
T ss_pred eEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECC---CCCHHHHHHHHHHCCEEEEECCcc-CccchHHHHHHH
Confidence 3455566654 44555556677778899998865 456666666677777777664433 344433344433
No 123
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=32.44 E-value=41 Score=25.36 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=42.7
Q ss_pred CcEEEEEeC----hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh-cCCeEEEEcCCCCCCcHHHHH
Q 017410 239 SDITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 239 ~di~ii~~G----~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~-~~~~vivvEe~~~~GGlg~~i 309 (372)
.+++|.+.| +....+.+|...|++.|++...+|+.. .|--.+.+.+... .+=..++++.. ..||+-...
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~vP~v~i~g~-~igg~d~~~ 90 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKAYSNWPTYPQLYVKGE-LVGGLDIVK 90 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTE-EEECHHHHH
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCC-CHHHHHHHHHHHCCCCCCeEEECCE-EEeChHHHH
Confidence 357777765 456778888888988899999999875 2211123333322 12245666544 578886533
No 124
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=32.40 E-value=91 Score=31.16 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=60.7
Q ss_pred CCceEecch--hHHHHHHHHHHHHhcCCeeEEEecccccH-HHHHHHHHHHHHhhhhhcCCCcccccEEEE--eCCCC-C
Q 017410 85 KSRVFNTPL--CEQGIVGFAIGLAAMGNRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGA-V 158 (372)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G~~pi~~i~~~~F~-~ra~dqi~~~~a~~~~~~~~~~~~~pvvi~--~~~G~-~ 158 (372)
|.++++.|. .=...++.|.|++++.-++++.+ .++.. +-.+..+. .+... ++ |++++ .-+|. .
T Consensus 411 p~~~~~~g~~g~~G~~l~~AiGaa~a~~~~vv~i-~GDGsf~~~~~el~-ta~~~--------~l-~~~ivv~NN~~~~~ 479 (564)
T 2q28_A 411 PRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAI-EGDSAFGFSGMEIE-TICRY--------NL-PVTIVIFNNGGIYR 479 (564)
T ss_dssp SSCEEESTTTTCTTCHHHHHHHHHHHHCSCEEEE-EEHHHHHTTGGGHH-HHHHT--------TC-CEEEEEEECSBSSC
T ss_pred CCeEecCCCCCcccchHHHHHHHhhcCCCcEEEE-EcchHhhccHHHHH-HHHHh--------CC-CeEEEEEeCchhHH
Confidence 778877543 22235778888877644555554 55542 22222222 23322 24 55443 33332 1
Q ss_pred CC------CC---CCC-C-hhHHH-HHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 159 GH------GG---HYH-S-QSPEA-FFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 159 g~------~G---~~H-s-~~d~a-~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
+. ++ .+. . ..|.. +.... |+..+...++.|+...++++++.++|++|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 538 (564)
T 2q28_A 480 GDGVDLSGAGAPSPTDLLHHARYDKLMDAF-RGVGYNVTTTDELRHALTTGIQSRKPTII 538 (564)
T ss_dssp SCCCCTTSSCCCCTTBCCTTCCGGGGGGGG-TCEEEEECSHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHhccCCccccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 11 11 000 0 12333 33333 67777889999999999999988999998
No 125
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.27 E-value=20 Score=25.50 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=20.2
Q ss_pred cHHHHHHHHhCCCChHHHHHhhhhcC
Q 017410 346 TKNKASCLESFKVPAQHCCMNLTAHG 371 (372)
Q Consensus 346 ~~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (372)
.+..++++.++||+..+|..+|.+.|
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~ 34 (64)
T 2crn_A 9 SPSLLEPLLAMGFPVHTALKALAATG 34 (64)
T ss_dssp SCSSHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 45667888888888888888887754
No 126
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=32.20 E-value=14 Score=29.82 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=28.6
Q ss_pred eeeCCcEEEEEeChhHH--HHHHHHHHHHhcCCceeEEee
Q 017410 235 IREGSDITLVGWGAQLS--IMEQACLDAEKEGISCELIDL 272 (372)
Q Consensus 235 ~~~g~di~ii~~G~~~~--~a~~Aa~~L~~~Gi~v~vi~~ 272 (372)
+.++.|++||++|.... .--+..+.|++.||.+++.+-
T Consensus 58 l~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T 97 (122)
T 2ab1_A 58 VEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQT 97 (122)
T ss_dssp HTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECH
T ss_pred hhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCH
Confidence 44567999999998654 344556778899999998863
No 127
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=31.59 E-value=59 Score=23.43 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=39.3
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCH----HHHHHHHh-cCCeEEEEcCCCCCCcHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDK----ETVEASVR-KTGRLLISHEAPVTGGFGA 307 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~----~~l~~~~~-~~~~vivvEe~~~~GGlg~ 307 (372)
+++|.+. +....+.+|...|++.|++.+.+++....+-+. +.+.+... ..-.++++++. ..||+..
T Consensus 13 ~v~ly~~-~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~-~i~G~~~ 83 (92)
T 3ic4_A 13 EVLMYGL-STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDK-HVLGYNE 83 (92)
T ss_dssp SSEEEEC-TTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTE-EEESCCH
T ss_pred eEEEEEC-CCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCE-EEeCCCH
Confidence 4555543 556778888888998899999999876543222 22222221 22355666443 4566643
No 128
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=31.45 E-value=70 Score=25.34 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhc-CCeEEEEc
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-TGRLLISH 297 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~-~~~vivvE 297 (372)
|++-..|...++.|++.|+++.++++....|-+ +.. ++.+++.=
T Consensus 12 Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~-------l~~~~d~ii~~~ 56 (147)
T 1f4p_A 12 GNTEYTAETIARELADAGYEVDSRDAASVEAGG-------LFEGFDLVLLGC 56 (147)
T ss_dssp SHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTT-------TTTTCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHH-------hcCcCCEEEEEe
Confidence 444555666666677779999999987765422 445 66666653
No 129
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=31.35 E-value=47 Score=20.49 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCChHHHHHhhhhcC
Q 017410 347 KNKASCLESFKVPAQHCCMNLTAHG 371 (372)
Q Consensus 347 ~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (372)
++.++++.+.|++.+.+..+|.+.+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~ 29 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAAN 29 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 5678889999999999888887754
No 130
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=31.33 E-value=62 Score=27.03 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=39.8
Q ss_pred cEEEEEeChhH----HHHHHHHHHHHhc-C--CceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 240 DITLVGWGAQL----SIMEQACLDAEKE-G--ISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 240 di~ii~~G~~~----~~a~~Aa~~L~~~-G--i~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
+++|+++|+.. ..-..+++.|+++ . -+++++|..+.- + + +...+..++++|+||--
T Consensus 2 ~ilVlGiGN~l~gDDG~G~~v~~~L~~~~~~p~~v~vid~gt~~-~--~-l~~~l~~~d~lIiVDA~ 64 (162)
T 1cfz_A 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG-M--E-LLGDMANRDHLIIADAI 64 (162)
T ss_dssp CEEEEEESCTTBGGGGHHHHHHHHHHHHEECCTTEEEEEEETCC-G--G-GHHHHSSCSEEEEEEEC
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhhCCCCCCeEEEECCCCH-H--H-HHHHHhCCCEEEEEEeh
Confidence 47899999875 3456778888774 3 268999998843 2 3 23457778999998863
No 131
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=31.23 E-value=1.4e+02 Score=27.94 Aligned_cols=70 Identities=9% Similarity=0.174 Sum_probs=42.7
Q ss_pred EEEEeChhHHH----HHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHH
Q 017410 242 TLVGWGAQLSI----MEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILE 315 (372)
Q Consensus 242 ~ii~~G~~~~~----a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~ 315 (372)
++|.++|+.+. |...++.|+++|.+++++++. ..+.+.+.+.+..++.+++.--.+ .++....+...+..
T Consensus 255 v~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~d~ii~gsp~~-~~~~~~~~~~~l~~ 328 (402)
T 1e5d_A 255 VVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCK---ACHHSQIMSEISDAGAVIVGSPTH-NNGILPYVAGTLQY 328 (402)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETT---TSCHHHHHHHHHTCSEEEEECCCB-TTBCCHHHHHHHHH
T ss_pred EEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECC---CCCHHHHHHHHHHCCEEEEECCcc-CCCchHHHHHHHHH
Confidence 34455665443 444555666678888888865 456677767777887766554433 45555555555543
No 132
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=31.10 E-value=1.5e+02 Score=24.56 Aligned_cols=67 Identities=7% Similarity=-0.023 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHhcC--CceeEEeeccc--CCCC------------------------HHHHHHHHhcCCeEEEEcCC
Q 017410 248 AQLSIMEQACLDAEKEG--ISCELIDLKTL--IPWD------------------------KETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~G--i~v~vi~~~~i--~P~d------------------------~~~l~~~~~~~~~vivvEe~ 299 (372)
.+...+...++.|++.| .+++++++... .+++ .+.+.+.+..++.||+.=--
T Consensus 17 ~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~aD~iv~~~P~ 96 (201)
T 1t5b_A 17 QSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPM 96 (201)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHHCSEEEEECCC
T ss_pred hHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEeCc
Confidence 34445556677787766 88999998763 2232 12345667778777666444
Q ss_pred CCCCcHHHHHHHHHHH
Q 017410 300 PVTGGFGAEISASILE 315 (372)
Q Consensus 300 ~~~GGlg~~i~~~l~~ 315 (372)
+ .+++...+..++-.
T Consensus 97 y-~~~~p~~lK~~iD~ 111 (201)
T 1t5b_A 97 Y-NFNIPTQLKNYFDL 111 (201)
T ss_dssp B-TTBCCHHHHHHHHH
T ss_pred c-cCcCCHHHHHHHHH
Confidence 3 67777777766644
No 133
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=30.94 E-value=1.5e+02 Score=30.71 Aligned_cols=39 Identities=10% Similarity=0.236 Sum_probs=29.9
Q ss_pred HHHcCCCCcEEE-ee---CCHHHHHHHHHHhHh-CCCcEEEEecc
Q 017410 171 AFFCHVPGLKVV-IP---RSPRQAKGLLLSCIR-DPNPVVFFEPK 210 (372)
Q Consensus 171 a~l~~iP~l~V~-~P---sd~~e~~~~l~~a~~-~~~Pv~ir~p~ 210 (372)
..++.. ||.++ .- .|..++..+++.|.+ .++|++|....
T Consensus 205 ~~~~a~-G~~~~~~vdG~~d~~~l~~Al~~A~~~~~~P~lI~~~T 248 (673)
T 1r9j_A 205 QKYVAM-GFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTT 248 (673)
T ss_dssp HHHHHT-TCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred HHHHHC-CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 456664 88888 43 688999999999987 68999986543
No 134
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=30.80 E-value=82 Score=26.35 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=34.3
Q ss_pred ChhHHHHHHHHHHHHh-cCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 247 GAQLSIMEQACLDAEK-EGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
|++-..|...++.|++ .|++++++++... +.+ .+..++.||+.=--+ .|++...+...+.
T Consensus 16 GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~---~~~----~l~~aD~ii~gsP~y-~g~~~~~lk~fld 76 (188)
T 2ark_A 16 GNTKKMAELVAEGARSLEGTEVRLKHVDEA---TKE----DVLWADGLAVGSPTN-MGLVSWKMKRFFD 76 (188)
T ss_dssp SHHHHHHHHHHHHHHTSTTEEEEEEETTTC---CHH----HHHHCSEEEEEEECB-TTBCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEEhhhC---CHH----HHHhCCEEEEEeCcc-CCcCCHHHHHHHH
Confidence 4445556666777777 7889999987654 222 233445555443332 4555555555554
No 135
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=30.76 E-value=1.3e+02 Score=28.35 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHHH
Q 017410 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILE 315 (372)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~~ 315 (372)
|++-..|...++.|+++|++++++++.. .+.+.+.+.+..++.|++.=--+ .|+....+...+..
T Consensus 268 GnT~~la~~i~~~l~~~g~~v~~~~l~~---~~~~~~~~~l~~~D~iiigsP~y-~~~~~~~~k~fld~ 332 (414)
T 2q9u_A 268 GTTHRMALALLDGARSTGCETVLLEMTS---SDITKVALHTYDSGAVAFASPTL-NNTMMPSVAAALNY 332 (414)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEEGGG---CCHHHHHHHHHTCSEEEEECCCB-TTBCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEEcCc---CCHHHHHHHHHhCCEEEEEcCcc-CcCchHHHHHHHHH
Confidence 3445556666667777899999998765 45556666677777776654443 56666666555543
No 136
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=30.35 E-value=80 Score=31.82 Aligned_cols=29 Identities=3% Similarity=-0.097 Sum_probs=26.5
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 178 GLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 178 ~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
|+.-+...++.|+...++++++.++|++|
T Consensus 526 G~~~~~v~~~~el~~al~~a~~~~gp~li 554 (578)
T 3lq1_A 526 DADYHEAKSVDELEEAIDKASYHKGLDII 554 (578)
T ss_dssp TCEEEECCSHHHHHHHHHHHTTSSSEEEE
T ss_pred CCceEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 56778889999999999999999999999
No 137
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=30.17 E-value=59 Score=26.55 Aligned_cols=42 Identities=7% Similarity=0.006 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC
Q 017410 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (372)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~ 290 (372)
+....+.+|.+.|++.|++.+.+|+.. .|...+.|.+.+.+.
T Consensus 10 p~C~~crkak~~L~~~gi~~~~idi~~-~~~~~~eL~~~~~~~ 51 (141)
T 1s3c_A 10 PASGTSRNTLEMIRNSGTEPTIILYLE-NPPSRDELVKLIADM 51 (141)
T ss_dssp TTCHHHHHHHHHHHHTTCCCEEECTTT-SCCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHcCCCEEEEECCC-CCccHHHHHHHhccc
Confidence 566789999999999999999999876 788888877766543
No 138
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.09 E-value=80 Score=24.22 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=39.6
Q ss_pred cEEEEEeChhHHHHH------HHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhc------------CCeEEEEcCCCC
Q 017410 240 DITLVGWGAQLSIME------QACLDAEKEGISCELIDLKTLIPWDKETVEASVRK------------TGRLLISHEAPV 301 (372)
Q Consensus 240 di~ii~~G~~~~~a~------~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~------------~~~vivvEe~~~ 301 (372)
+++|.+. +....+. +|.+.|++.|++.+.+|+.. |.+...+..+. +=..|++++..
T Consensus 9 ~V~vy~~-~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~----~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~- 82 (111)
T 2ct6_A 9 VIRVFIA-SSSGFVAIKKKQQDVVRFLEANKIEFEEVDITM----SEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRY- 82 (111)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTT----CHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEE-
T ss_pred EEEEEEc-CCCCCcccchhHHHHHHHHHHcCCCEEEEECCC----CHHHHHHHHHHhcccccccCCCCCCCEEEECCEE-
Confidence 4666654 3334455 78888999999999999876 33332222222 12567887664
Q ss_pred CCcHHHH
Q 017410 302 TGGFGAE 308 (372)
Q Consensus 302 ~GGlg~~ 308 (372)
.||+-..
T Consensus 83 iGG~d~l 89 (111)
T 2ct6_A 83 CGDYDSF 89 (111)
T ss_dssp EEEHHHH
T ss_pred EeCHHHH
Confidence 6888653
No 139
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.07 E-value=30 Score=22.68 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=18.2
Q ss_pred cHHHHHHHHhCCCChHHHHHhhhhcC
Q 017410 346 TKNKASCLESFKVPAQHCCMNLTAHG 371 (372)
Q Consensus 346 ~~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (372)
.++.++++.++||+...+..+|.+.|
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~~~ 34 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTREHAMEALLNTS 34 (47)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 35667777777777777777776653
No 140
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=30.02 E-value=62 Score=26.61 Aligned_cols=49 Identities=12% Similarity=-0.032 Sum_probs=35.8
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCC-CHHHHHH
Q 017410 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW-DKETVEA 285 (372)
Q Consensus 237 ~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~-d~~~l~~ 285 (372)
.+.++++|+-|+.....+..++.|.+.+-++.++..|+-.-+ -.+.|.+
T Consensus 22 ~~~~~llIaGG~GItPl~sm~~~l~~~~~~v~l~g~r~~~d~~~~~el~~ 71 (158)
T 3lrx_A 22 KFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFEPMVILKEELEK 71 (158)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHHHTCEEEEEEECBGGGCCSHHHHHH
T ss_pred CCCeEEEEEccCcHHHHHHHHHHHHhcCCcEEEEEeCCHHHhhHHHHHHH
Confidence 356899999999998888888888777878888855554332 2455654
No 141
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=29.74 E-value=1.5e+02 Score=23.05 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=23.4
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEee
Q 017410 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (372)
Q Consensus 238 g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~ 272 (372)
..+++|+++|.+-. ..++.|.++|.++.+++.
T Consensus 6 ~~~v~I~G~G~iG~---~la~~L~~~g~~V~~id~ 37 (141)
T 3llv_A 6 RYEYIVIGSEAAGV---GLVRELTAAGKKVLAVDK 37 (141)
T ss_dssp CCSEEEECCSHHHH---HHHHHHHHTTCCEEEEES
T ss_pred CCEEEEECCCHHHH---HHHHHHHHCCCeEEEEEC
Confidence 35788999887543 345667788999988884
No 142
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=29.67 E-value=1.5e+02 Score=27.76 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=46.5
Q ss_pred eeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeeccc-------------CCCCHHHHHHHHhcCCeEEEEcCCCCC
Q 017410 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL-------------IPWDKETVEASVRKTGRLLISHEAPVT 302 (372)
Q Consensus 236 ~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i-------------~P~d~~~l~~~~~~~~~vivvEe~~~~ 302 (372)
..++.+.|++.|.....+. +.+++.|+++-++|..-- ...|.+.+.+.+++.+ +|+.|-...
T Consensus 12 ~~~k~IlIlG~G~~g~~la---~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~d-vI~~~~e~~- 86 (389)
T 3q2o_A 12 LPGKTIGIIGGGQLGRMMA---LAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISD-VVTYEFENI- 86 (389)
T ss_dssp CTTSEEEEECCSHHHHHHH---HHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCS-EEEESCCCC-
T ss_pred CCCCEEEEECCCHHHHHHH---HHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCC-Eeeeccccc-
Confidence 3567899999998654444 445566999999985421 2356677888887754 567665432
Q ss_pred CcHHHHHHHHHHHhc
Q 017410 303 GGFGAEISASILERC 317 (372)
Q Consensus 303 GGlg~~i~~~l~~~~ 317 (372)
...++..+.+.+
T Consensus 87 ---~~~~~~~l~~~g 98 (389)
T 3q2o_A 87 ---DYRCLQWLEKHA 98 (389)
T ss_dssp ---CHHHHHHHHHHS
T ss_pred ---cHHHHHHHHhhC
Confidence 234444555544
No 143
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.19 E-value=49 Score=21.92 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCChHHHHHhhhhcC
Q 017410 347 KNKASCLESFKVPAQHCCMNLTAHG 371 (372)
Q Consensus 347 ~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (372)
++.++++.++||+.+.+..+|.+.+
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~~~~ 33 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALRASY 33 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 5677888888888888888887654
No 144
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=29.05 E-value=54 Score=24.68 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=43.2
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHH-h-cCCeEEEEcCCCCCCcHHHHH
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV-R-KTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~-~-~~~~vivvEe~~~~GGlg~~i 309 (372)
.+++|++. +....|.+|.+.|++.|++...+++..-.+. .+.+.+.. . .+=..++++.. ..||+....
T Consensus 16 ~~v~vy~~-~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~-~~~l~~~~~g~~~vP~ifi~g~-~igG~d~l~ 85 (99)
T 3qmx_A 16 AKIEIYTW-STCPFCMRALALLKRKGVEFQEYCIDGDNEA-REAMAARANGKRSLPQIFIDDQ-HIGGCDDIY 85 (99)
T ss_dssp CCEEEEEC-TTCHHHHHHHHHHHHHTCCCEEEECTTCHHH-HHHHHHHTTTCCCSCEEEETTE-EEESHHHHH
T ss_pred CCEEEEEc-CCChhHHHHHHHHHHCCCCCEEEEcCCCHHH-HHHHHHHhCCCCCCCEEEECCE-EEeChHHHH
Confidence 46777665 5568899999999999999999998652111 12233322 1 22256667655 468886543
No 145
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=28.64 E-value=1.9e+02 Score=28.65 Aligned_cols=27 Identities=7% Similarity=-0.011 Sum_probs=24.6
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 180 KVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 180 ~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
..+...+..|+...++++++.++|++|
T Consensus 500 ~~~~v~~~~~l~~al~~a~~~~gp~li 526 (552)
T 1ovm_A 500 ECWRVSEAEQLADVLEKVAHHERLSLI 526 (552)
T ss_dssp EEEEECBHHHHHHHHHHHTTCSSEEEE
T ss_pred CEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 777888999999999999988999988
No 146
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.41 E-value=31 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=22.2
Q ss_pred CcHHHHHHHHhCCCChHHHHHhhhhcC
Q 017410 345 PTKNKASCLESFKVPAQHCCMNLTAHG 371 (372)
Q Consensus 345 ~~~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (372)
+.++.++++.++||+...+..+|.+.+
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~ 44 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTG 44 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 557778889999999999988887764
No 147
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=27.79 E-value=63 Score=32.51 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=29.0
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q 017410 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (372)
Q Consensus 171 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i 206 (372)
.+.... |+..+...+..|+...++++++.++|++|
T Consensus 521 ~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~li 555 (573)
T 2iht_A 521 ALAEAN-GVDATRATNREELLAALRKGAELGRPFLI 555 (573)
T ss_dssp HHHHHT-TCEEEECCSHHHHHHHHHHHHTSSSCEEE
T ss_pred HHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 344444 67777889999999999999998999998
No 148
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=27.23 E-value=32 Score=26.99 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=25.4
Q ss_pred eeCCcEEEEE-eCh--hHHHHHHHHHHHHhcCCceeEE
Q 017410 236 REGSDITLVG-WGA--QLSIMEQACLDAEKEGISCELI 270 (372)
Q Consensus 236 ~~g~di~ii~-~G~--~~~~a~~Aa~~L~~~Gi~v~vi 270 (372)
++|.++++++ .|. ++....+.++.+++.|+++++|
T Consensus 77 ~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~vi 114 (117)
T 3hh1_A 77 EEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPV 114 (117)
T ss_dssp HTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEE
T ss_pred HCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEe
Confidence 5688899999 674 3445556666777789998876
No 149
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=26.69 E-value=85 Score=26.48 Aligned_cols=57 Identities=4% Similarity=0.000 Sum_probs=37.2
Q ss_pred EEEEEeChhH----HHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhc--CCeEEEEcCC
Q 017410 241 ITLVGWGAQL----SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK--TGRLLISHEA 299 (372)
Q Consensus 241 i~ii~~G~~~----~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~--~~~vivvEe~ 299 (372)
++|++-|... ..+.++++.|++.|+.+-.|-+.. ..+.+.|.+.+.. .++++.+++.
T Consensus 119 iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~--~~~~~~L~~iA~~~~~~~~~~~~~~ 181 (202)
T 1ijb_A 119 ALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGP--HANLKQIRLIEKQAPENKAFVLSSV 181 (202)
T ss_dssp EEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEEST--TSCHHHHHHHHHHCTTCCCEEESSG
T ss_pred EEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCC--cCCHHHHHHHhCCCCcccEEEeCCH
Confidence 4555666432 246678888888887776666543 4688888877652 3567777643
No 150
>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function, hydrolase activator; 2.55A {Caulobacter vibrioides} PDB: 2qaz_A
Probab=26.67 E-value=9.7 Score=32.15 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=53.8
Q ss_pred ccHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCccccchhHHHHhCCC--------ceEecchhHHHHHHHHHHHHh
Q 017410 40 LNLYSAINQALHIALETD----PRAYVFGEDVGFGGVFRCTTGLADRFGKS--------RVFNTPLCEQGIVGFAIGLAA 107 (372)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d----~~vv~i~aD~~~gg~~~~~~~~~~~~~p~--------r~i~~GIaE~~~vg~A~GlA~ 107 (372)
-.+|..+.++|.+.++.. ..-+.|+=+...-|+ ...+.++++| |+ +|+|.-+.|.+ +..+|+.
T Consensus 22 ~AlrgVvr~vL~~va~~g~LPg~HHFyITF~T~~pGV-~i~d~L~~~Y-P~EMTIVLQhQF~dL~V~e~~---FsV~LsF 96 (157)
T 2qas_A 22 DALRGVVKAALKKAAAPGGLPEPHHLYITFKTKAAGV-SGPQDLLSKY-PDEMTIVLQHQYWDLAPGETF---FSVTLKF 96 (157)
T ss_dssp HHHHHHHHHHHHHHSSTTCSCTTCCEEEEEETTSTTC-BCCHHHHHHS-SSEEEEEESSSCEEEEECSSE---EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccEEEEEEecCCCCc-cCCHHHHhhC-CCceEEEEEeeecCcEEecCc---EEEEEEe
Confidence 357888999999888876 445777766552222 2467899999 85 89999999986 7788888
Q ss_pred cCCeeEEEecc
Q 017410 108 MGNRAIAEIQF 118 (372)
Q Consensus 108 ~G~~pi~~i~~ 118 (372)
.|..--..|.|
T Consensus 97 gg~pe~L~IPf 107 (157)
T 2qas_A 97 GGQPKRLSVPY 107 (157)
T ss_dssp TTEEEEEEEEG
T ss_pred CCeeeEEEeeh
Confidence 88655555543
No 151
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} SCOP: b.136.1.2
Probab=26.54 E-value=12 Score=32.29 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCccccchhHHHHhCCC--------ceEecchhHHHHHHHHHHHHhc
Q 017410 41 NLYSAINQALHIALETD----PRAYVFGEDVGFGGVFRCTTGLADRFGKS--------RVFNTPLCEQGIVGFAIGLAAM 108 (372)
Q Consensus 41 ~~~~a~~~~L~~l~~~d----~~vv~i~aD~~~gg~~~~~~~~~~~~~p~--------r~i~~GIaE~~~vg~A~GlA~~ 108 (372)
.+|..+.++|.+.++.. ..-+.|+=+...-|+ ...+.|+++| |+ +|+|.-+.|.+ +..+|+..
T Consensus 15 AlrgVvr~vL~~va~~g~LPg~HHFyITF~T~~pGV-~i~~~L~~~Y-P~EMTIVLQhQF~dL~V~e~~---FsV~LsFg 89 (176)
T 2nys_A 15 ALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGV-RISQHLKSKY-AEQMTIVIQHQFWDMKVTETG---FEIGLSFS 89 (176)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTTC-BCCHHHHHHS-SSEEEEEESSSCEEEEECSSE---EEEEEEET
T ss_pred HHHHHHHHHHHHHHHcCCCCCccEEEEEEecCCCCc-cCCHHHHhhC-CCceEEEEEeeecCcEEecCc---EEEEEEeC
Confidence 57889999999999977 445777766552223 2467899999 85 89999999986 77888888
Q ss_pred CCeeEEEecc
Q 017410 109 GNRAIAEIQF 118 (372)
Q Consensus 109 G~~pi~~i~~ 118 (372)
|..--..|.|
T Consensus 90 g~pe~L~IPf 99 (176)
T 2nys_A 90 DTPEKLVIPY 99 (176)
T ss_dssp TEEEEEEEEG
T ss_pred CeeeEEEeeh
Confidence 8655555543
No 152
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=26.43 E-value=80 Score=27.09 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCcee-EEeecccCCCC-----------HHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHH
Q 017410 253 MEQACLDAEKEGISCE-LIDLKTLIPWD-----------KETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (372)
Q Consensus 253 a~~Aa~~L~~~Gi~v~-vi~~~~i~P~d-----------~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l 313 (372)
+..+++.+ ++|.+++ ++++.-+-.++ .+.+.+.++..+.+|+.---| .+++...+..++
T Consensus 26 a~~~~~~~-~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~Y-~~s~p~~LK~~i 96 (199)
T 4hs4_A 26 ARALPEIA-PEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEY-NYSVPGVLKNAI 96 (199)
T ss_dssp HHHHHHHC-CTTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECCB-TTBCCHHHHHHH
T ss_pred HHHHHHHc-cCCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCcc-CCCcCHHHHHHH
Confidence 33344444 3588888 89887652232 234667777888877664333 466655555544
No 153
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=26.37 E-value=1.2e+02 Score=24.11 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHH---------hcCCeEEEEcCCCCCCcHHHHH
Q 017410 253 MEQACLDAEKEGISCELIDLKTLIPWDKETVEASV---------RKTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 253 a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~---------~~~~~vivvEe~~~~GGlg~~i 309 (372)
+..|...|+..||+.+-+|+.. .|--.+.+.+.. ..+-..|++++.+ .||+-...
T Consensus 19 c~~aK~lL~~kgV~feEidI~~-d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~-iGG~Dd~~ 82 (121)
T 1u6t_A 19 QQDVLGFLEANKIGFEEKDIAA-NEENRKWMRENVPENSRPATGYPLPPQIFNESQY-RGDYDAFF 82 (121)
T ss_dssp HHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEE-EEEHHHHH
T ss_pred HHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHhccccccccCCCcCCCEEEECCEE-EechHHHH
Confidence 5778888999999999999875 222222333332 1123568888775 69986544
No 154
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=26.34 E-value=1.3e+02 Score=28.30 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=39.9
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccC-------------CCCHHHHHHHHhcCCeEEEEcC
Q 017410 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI-------------PWDKETVEASVRKTGRLLISHE 298 (372)
Q Consensus 237 ~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~-------------P~d~~~l~~~~~~~~~vivvEe 298 (372)
.++.+.|++.|.......+++. +.|+++-+++..--. ..|.+.+.+.+++.+ +|+.|-
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~---~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~d-vi~~~~ 81 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQ---KMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCD-VITYEF 81 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH---HTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCS-EEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHH---HCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCC-cceecc
Confidence 4667999999987665555554 459999999864222 246778888887765 567753
No 155
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=26.29 E-value=1e+02 Score=27.08 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHhcCCceeEEeecccC--CC-------------------------------CH--HHHHHHHhcCCeE
Q 017410 249 QLSIMEQACLDAEKEGISCELIDLKTLI--PW-------------------------------DK--ETVEASVRKTGRL 293 (372)
Q Consensus 249 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~--P~-------------------------------d~--~~l~~~~~~~~~v 293 (372)
+...+..+++.|++.|.+++++|+.... |. +. +.+.+.++..+.|
T Consensus 17 t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dd~~~~~~~l~~aD~i 96 (228)
T 3tem_A 17 NGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLV 96 (228)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcHHHHHHHHHHHhCCEE
Confidence 4455666777888889999999997543 21 11 2344557778877
Q ss_pred EEEcCCCCCCcHHHHHHHHHHH
Q 017410 294 LISHEAPVTGGFGAEISASILE 315 (372)
Q Consensus 294 ivvEe~~~~GGlg~~i~~~l~~ 315 (372)
|+.=--+ .+++...+..++-.
T Consensus 97 v~~~P~y-~~~~p~~lK~~iD~ 117 (228)
T 3tem_A 97 IFQFPLY-WFSVPAILKGWMDR 117 (228)
T ss_dssp EEEEECB-TTBCCHHHHHHHHH
T ss_pred EEECChh-hcccCHHHHHHHHH
Confidence 7664443 57777777666643
No 156
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=26.24 E-value=1.1e+02 Score=25.96 Aligned_cols=62 Identities=5% Similarity=0.026 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCceeEEeecccCCCC----------HHHHHHHHhcCCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 251 SIMEQACLDAEKEGISCELIDLKTLIPWD----------KETVEASVRKTGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 251 ~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d----------~~~l~~~~~~~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
..+..+++.++ +|.+++++++.-+-.++ .+.+.+.+...+.+|+.=--| .+++...+..++-
T Consensus 20 ~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y-~~~~p~~lK~~iD 91 (192)
T 3fvw_A 20 QLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY-NYAIPGPVKNLLD 91 (192)
T ss_dssp HHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB-TTBCCHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc-ccCCCHHHHHHHH
Confidence 34555555665 68899999988642222 245677788888877664443 5777666666554
No 157
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.20 E-value=50 Score=23.09 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=20.1
Q ss_pred cHHHHHHHHhCCCChHHHHHhhhhcC
Q 017410 346 TKNKASCLESFKVPAQHCCMNLTAHG 371 (372)
Q Consensus 346 ~~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (372)
.++.++++.++||+...+..+|.+.+
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~ 34 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATN 34 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 46777888888888888888887654
No 158
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=26.15 E-value=2.5e+02 Score=22.35 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=58.7
Q ss_pred cEEEEEeCh-hHHHHHHHHHHHHhcCCceeEEeecccCCCC--HHHHHHHHhc---CCeEEEE-cCCCCCCcHHHHHHHH
Q 017410 240 DITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWD--KETVEASVRK---TGRLLIS-HEAPVTGGFGAEISAS 312 (372)
Q Consensus 240 di~ii~~G~-~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d--~~~l~~~~~~---~~~vivv-Ee~~~~GGlg~~i~~~ 312 (372)
.++|++.|. ......++++.+-.+ -.+..+++..=...+ .+.+.+.+++ .+.|+++ |- |.. ..++..
T Consensus 6 giiivsHG~~~A~~l~~~a~~i~G~-~~~~aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~Dm----GSp-~n~a~~ 79 (130)
T 3gx1_A 6 EVIVMMHGRSTATSMVETVQELLSI-ESGIALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDM----GSL-TSFGNI 79 (130)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTC-CCCEEEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECS----GGG-GTHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHcCc-cCEEEEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeC----CCH-HHHHHH
Confidence 488999999 888888999887654 567778765432221 1335555654 3456554 55 333 223444
Q ss_pred HHHhccccCCCcEEEEeccCCCcccccc-----cCCCCcHHHHHHHHh
Q 017410 313 ILERCFLRLEAPVARVCGLDTPFPLVFE-----PFYMPTKNKASCLES 355 (372)
Q Consensus 313 l~~~~~~~l~~~v~~ig~~~~~~~~lle-----~~~l~~~~~~~~i~~ 355 (372)
+.+.. ..++.-+.+.+.| .++| .++-+-+++++.+..
T Consensus 80 l~~~~----~~~v~vI~gvnlp--mllea~~~~~~~~~l~el~~~~~~ 121 (130)
T 3gx1_A 80 LTEEL----GIRTKTVTMVSTP--VVLEAMRKASLGRGLEDIYQSCEQ 121 (130)
T ss_dssp HHHHH----CCCEEEECSCCHH--HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhc----CCCEEEEeCCCHH--HHHHHHHHhhcCCCHHHHHHHHHH
Confidence 44331 3456667665543 3332 233455666665544
No 159
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=25.99 E-value=50 Score=33.15 Aligned_cols=27 Identities=7% Similarity=0.201 Sum_probs=24.2
Q ss_pred EEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q 017410 180 KVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (372)
Q Consensus 180 ~V~~Psd~~e~~~~l~~a~~~-~~Pv~i 206 (372)
..+...++.|+...++++++. ++|++|
T Consensus 500 ~~~~v~~~~el~~al~~a~~~~~gp~li 527 (566)
T 2vbi_A 500 LGLKATTPKELTEAIARAKANTRGPTLI 527 (566)
T ss_dssp EEEEECSHHHHHHHHHHHHHCCSSCEEE
T ss_pred cEEEeCCHHHHHHHHHHHHhcCCCcEEE
Confidence 666778999999999999987 999998
No 160
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=25.83 E-value=1.6e+02 Score=27.12 Aligned_cols=67 Identities=9% Similarity=0.160 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHH----HHhCCC---ceEec---chhHHHHHHHHHHHHhcCC
Q 017410 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLA----DRFGKS---RVFNT---PLCEQGIVGFAIGLAAMGN 110 (372)
Q Consensus 43 ~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~----~~~~p~---r~i~~---GIaE~~~vg~A~GlA~~G~ 110 (372)
...|.+...++++++.+|++++=-.+.+|+|....-.+ ++| |+ +++|+ +..+..++--|+=|+..|.
T Consensus 70 ~~~~~~~f~~l~~~g~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~-~~~~I~ViDS~~~s~g~g~~v~~A~~l~~~G~ 146 (297)
T 3nyi_A 70 VESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDY-PDANICVIDSKQNTVTQALLIDQFVRMLEDGL 146 (297)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEESCTTTCSHHHHHHHHHHHHHHHC-TTCCEEEEECSCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCCcHhHHHHHHHHHHHHHHhhC-CCCeEEEEeCCchHHHHHHHHHHHHHHHHcCC
Confidence 56788888899998888998875555446765333334 688 76 67774 5567777788888888885
No 161
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=25.78 E-value=1.5e+02 Score=26.35 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=37.5
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCC
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~ 299 (372)
+.+|| +|.....-...++.|.++|.+|-+.+. +++.+.+..+...++..+.-+
T Consensus 3 K~vlV-TGas~GIG~aia~~la~~Ga~V~~~~~------~~~~~~~~~~~~~~~~~~~~D 55 (247)
T 3ged_A 3 RGVIV-TGGGHGIGKQICLDFLEAGDKVCFIDI------DEKRSADFAKERPNLFYFHGD 55 (247)
T ss_dssp CEEEE-ESTTSHHHHHHHHHHHHTTCEEEEEES------CHHHHHHHHTTCTTEEEEECC
T ss_pred CEEEE-ecCCCHHHHHHHHHHHHCCCEEEEEeC------CHHHHHHHHHhcCCEEEEEec
Confidence 45555 477778888888999999999888774 466676666666566555433
No 162
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=25.44 E-value=2.5e+02 Score=23.58 Aligned_cols=100 Identities=9% Similarity=0.012 Sum_probs=54.6
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhc---CCceeEEeecccCCCCHHH--------HHHHHhcCCeEEEEcCCCCCCcHHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKE---GISCELIDLKTLIPWDKET--------VEASVRKTGRLLISHEAPVTGGFGAE 308 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~---Gi~v~vi~~~~i~P~d~~~--------l~~~~~~~~~vivvEe~~~~GGlg~~ 308 (372)
++.||+.|..-....+++++-.+. -.+++++.+.-.+..+.+. |.+.+.+...+|.+|+.-..= -+.+
T Consensus 4 ki~IiaVGk~k~~~~~~i~eY~kRl~~~~~lei~ev~~~k~~~~~~~~~~E~~~il~~i~~~~~vI~LD~~Gk~~-sS~~ 82 (163)
T 1o6d_A 4 RVRIAVIGKLDGFIKEGIKHYEKFLRRFCKPEVLEIKRVHRGSIEEIVRKETEDLTNRILPGSFVMVMDKRGEEV-SSEE 82 (163)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCHHHHHHHHHHHHHTTCCTTCEEEEEEEEEEEC-CHHH
T ss_pred EEEEEEecCccHHHHHHHHHHHHHcCccCCceEEEecCcccccHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCcC-CHHH
Confidence 478999998555566666654433 3578888877766544332 333332333478887753211 1345
Q ss_pred HHHHHHHhccccCCCcEEEEeccCCCccccccc
Q 017410 309 ISASILERCFLRLEAPVARVCGLDTPFPLVFEP 341 (372)
Q Consensus 309 i~~~l~~~~~~~l~~~v~~ig~~~~~~~~lle~ 341 (372)
+++.|.+....+ ..-.--|||.+...+.++++
T Consensus 83 fA~~l~~~~~~G-~~i~FvIGGa~Gl~~~v~~r 114 (163)
T 1o6d_A 83 FADFLKDLEMKG-KDITILIGGPYGLNEEIFAK 114 (163)
T ss_dssp HHHHHHHHHHHT-CCEEEEECCTTCCCGGGGGG
T ss_pred HHHHHHHHHhcC-CeEEEEEECCCCCCHHHHHh
Confidence 565555432111 22234788888766554443
No 163
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=25.40 E-value=1.4e+02 Score=30.77 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=29.0
Q ss_pred HHHcCCCCcEEEeeC---CHHHHHHHHHHhHhCCCcEEEEec
Q 017410 171 AFFCHVPGLKVVIPR---SPRQAKGLLLSCIRDPNPVVFFEP 209 (372)
Q Consensus 171 a~l~~iP~l~V~~Ps---d~~e~~~~l~~a~~~~~Pv~ir~p 209 (372)
..+... |+.++-+. |..++..+++.|.+.++|++|...
T Consensus 207 ~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~ 247 (651)
T 2e6k_A 207 ARYRAY-GWQTLRVEDVNDLEALRKAIKLAKLDERPTLIAVR 247 (651)
T ss_dssp HHHHHT-TCEEEEESCTTCHHHHHHHHHHHHHSSSCEEEEEE
T ss_pred HHHHhC-CCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEEE
Confidence 455554 88887343 799999999999888899988543
No 164
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=25.31 E-value=1.6e+02 Score=30.50 Aligned_cols=38 Identities=8% Similarity=0.034 Sum_probs=28.0
Q ss_pred HHHcCCCCcEEEee-C---CHHHHHHHHHHhHh-CCCcEEEEec
Q 017410 171 AFFCHVPGLKVVIP-R---SPRQAKGLLLSCIR-DPNPVVFFEP 209 (372)
Q Consensus 171 a~l~~iP~l~V~~P-s---d~~e~~~~l~~a~~-~~~Pv~ir~p 209 (372)
..++.. |+.++.+ . |..++..+++.|.+ .++|++|...
T Consensus 205 ~~~~a~-G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~lI~~~ 247 (680)
T 1gpu_A 205 KRYEAY-GWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMT 247 (680)
T ss_dssp HHHHHH-TCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEEE
T ss_pred HHHHhc-CCeEEEEecCCCCHHHHHHHHHHHHHCCCCCEEEEEE
Confidence 455553 7888733 3 78899999999988 6899988543
No 165
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=25.23 E-value=1.9e+02 Score=24.56 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=34.0
Q ss_pred CcEEEEEeChhHHHHHHHH----HHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEEEcCCCCCCcHHH
Q 017410 239 SDITLVGWGAQLSIMEQAC----LDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGA 307 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa----~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivvEe~~~~GGlg~ 307 (372)
.++ +|.|||+++.+.+.+ +.|.+.|+++.++++....+ .+.+.+.+|++=-.+ .|.+-.
T Consensus 22 ~kv-~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~~~--------~l~~~d~vi~g~~Ty-~G~~p~ 84 (191)
T 1bvy_F 22 TPL-LVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAG--------NLPREGAVLIVTASY-NGHPPD 84 (191)
T ss_dssp CCE-EEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGSTT--------CCCSSSEEEEEECCB-TTBCCT
T ss_pred CeE-EEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHhhh--------hhhhCCeEEEEEeec-CCCcCH
Confidence 344 445666665555554 44555689999999876421 134556666654444 555433
No 166
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=24.96 E-value=3e+02 Score=22.84 Aligned_cols=106 Identities=13% Similarity=0.062 Sum_probs=63.2
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCH-HHHHHHHhc---CCeEEEEcCCCCCCcHHHHHHHHHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDK-ETVEASVRK---TGRLLISHEAPVTGGFGAEISASILE 315 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~-~~l~~~~~~---~~~vivvEe~~~~GGlg~~i~~~l~~ 315 (372)
.++|++.|......+++++.+--+--.+..+++..=.|-+. +.+.+.+++ .+.|+++-|= .||--..++..+.+
T Consensus 23 ~iII~sHG~~A~gl~~s~~~i~G~~~~v~av~~~~~~~~~~~~~~~~~i~~~~~~~gVLiLtDl--~GGSP~n~a~~~~~ 100 (159)
T 3mtq_A 23 HYIFASHGSFANGLLNSVELILGKQPDIHTLCAYVEEEVDLTQQVEALVARFPAQDELIVITDI--FAGSVNNEFVRFLS 100 (159)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHCCCTTEEEEEETSCSSSCHHHHHHHHHHTSCTTSEEEEEESC--TTSHHHHHHHGGGG
T ss_pred eEEEEeCcHHHHHHHHHHHHHcCCCCCeEEEECCCCCHHHHHHHHHHHHHhcCCCCCEEEEEeC--CCCCHHHHHHHHhc
Confidence 58899999998888899988753323677787654233122 345566654 3567777664 36655555433332
Q ss_pred hccccCCCcEEEEeccCCCcccccc----cCCCCcHHHHHHHHh
Q 017410 316 RCFLRLEAPVARVCGLDTPFPLVFE----PFYMPTKNKASCLES 355 (372)
Q Consensus 316 ~~~~~l~~~v~~ig~~~~~~~~lle----~~~l~~~~~~~~i~~ 355 (372)
..++.-+.|-+.| .++| +...+.+++++.+.+
T Consensus 101 ------~~~v~vItGvNLp--Mlle~~~~~~~~~l~el~~~~i~ 136 (159)
T 3mtq_A 101 ------RPHFHLLSGLNLP--LIIDLLISAAEDNTEKLITEALT 136 (159)
T ss_dssp ------STTEEEEECCCHH--HHHHHHHTTTCCCHHHHHHHHHH
T ss_pred ------CCCeEEEeCCCHH--HHHHHHHhhcCCCHHHHHHHHHH
Confidence 2456677776654 3322 334555666665544
No 167
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=24.77 E-value=1.5e+02 Score=24.99 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHhcC--CceeEEeec--cc--CCCCH-----------------------------HHHHHHHhcCCeE
Q 017410 249 QLSIMEQACLDAEKEG--ISCELIDLK--TL--IPWDK-----------------------------ETVEASVRKTGRL 293 (372)
Q Consensus 249 ~~~~a~~Aa~~L~~~G--i~v~vi~~~--~i--~P~d~-----------------------------~~l~~~~~~~~~v 293 (372)
+...+...++.+++.| .+++++++. .. .+++. +.+.+.+...+.|
T Consensus 19 t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~i 98 (208)
T 2hpv_A 19 SVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKV 98 (208)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCEE
Confidence 3444556677788777 899999998 53 34432 2245567777777
Q ss_pred EEEcCCCCCCcHHHHHHHHHHH
Q 017410 294 LISHEAPVTGGFGAEISASILE 315 (372)
Q Consensus 294 ivvEe~~~~GGlg~~i~~~l~~ 315 (372)
|+.==-+ .+++...+..++-.
T Consensus 99 v~~~P~y-~~~~pa~lK~~iD~ 119 (208)
T 2hpv_A 99 VIANPMW-NLNVPTRLKAWVDT 119 (208)
T ss_dssp EEEEECB-TTBCCHHHHHHHHH
T ss_pred EEEeccc-cCCCCHHHHHHHHH
Confidence 7654443 57777777766654
No 168
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.70 E-value=64 Score=22.69 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=18.6
Q ss_pred cHHHHHHHHhCCCChHHHHHhhhhcC
Q 017410 346 TKNKASCLESFKVPAQHCCMNLTAHG 371 (372)
Q Consensus 346 ~~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (372)
.++.++++.++||+.+.+..+|.+.+
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~ 34 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNG 34 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 36677788888888877777776543
No 169
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=24.55 E-value=1.6e+02 Score=26.82 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=12.0
Q ss_pred CCceeEEeecccCCCCHHHHHHHHh
Q 017410 264 GISCELIDLKTLIPWDKETVEASVR 288 (372)
Q Consensus 264 Gi~v~vi~~~~i~P~d~~~l~~~~~ 288 (372)
|.++..+.+..-..+|.+.|.+.++
T Consensus 121 g~~~~~~~~~~~~~~d~~~l~~~i~ 145 (393)
T 3kgw_A 121 GARVHQMIKKPGEHYTLQEVEEGLA 145 (393)
T ss_dssp TCEEEEEECCTTCCCCHHHHHHHHH
T ss_pred CCceEEEeCCCCCCCCHHHHHHHHh
Confidence 5444444443333455555555554
No 170
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=24.27 E-value=2.2e+02 Score=21.49 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=44.1
Q ss_pred CCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHH----h-cCCeEEEEcCCCCCCcHHHHH
Q 017410 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV----R-KTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 238 g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~----~-~~~~vivvEe~~~~GGlg~~i 309 (372)
..+++|++. +....|.+|...|++.|++...+++.... +.+.+.+.+ . .+=+.++++.. ..||+....
T Consensus 16 ~~~v~vy~~-~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~--~~~~~~~~l~~~~g~~tvP~vfi~g~-~igG~d~l~ 88 (114)
T 3h8q_A 16 RSRVVIFSK-SYCPHSTRVKELFSSLGVECNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKV-HVGGCDQTF 88 (114)
T ss_dssp HCSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEETTTST--THHHHHHHHHHHHSCCSSCEEEETTE-EEESHHHHH
T ss_pred cCCEEEEEc-CCCCcHHHHHHHHHHcCCCcEEEEecCCC--ChHHHHHHHHHHhCCCccCEEEECCE-EEeCHHHHH
Confidence 356777665 66788999999999999999999976532 333333322 1 22355667554 579886533
No 171
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.75 E-value=51 Score=24.00 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=21.1
Q ss_pred cHHHHHHHHhCCCChHHHHHhhhhcC
Q 017410 346 TKNKASCLESFKVPAQHCCMNLTAHG 371 (372)
Q Consensus 346 ~~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (372)
.++.++++.++||+..++..+|.+.+
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~ 34 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTG 34 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 46778888889999888888887754
No 172
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=23.65 E-value=1.1e+02 Score=24.71 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=29.4
Q ss_pred EEEEeChhHHHHHHHHHHHHhc-CCceeEEeecccCCCCHHHHHHHHhcCCeEEEE
Q 017410 242 TLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKETVEASVRKTGRLLIS 296 (372)
Q Consensus 242 ~ii~~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~vivv 296 (372)
++|.|+|.++...+.++.+.++ |. +.++++.. .+.+. +.+++.|++.
T Consensus 4 ~~I~Y~S~tGnT~~~A~~ia~~lg~-~~~~~~~~---~~~~~----l~~~d~ii~g 51 (164)
T 2bmv_A 4 IGIFFGTDSGNAEAIAEKISKAIGN-AEVVDVAK---ASKEQ----FNSFTKVILV 51 (164)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHCS-EEEEEGGG---CCHHH----HTTCSEEEEE
T ss_pred EEEEEECCCchHHHHHHHHHHHcCC-cEEEeccc---CCHhH----HhhCCEEEEE
Confidence 3566888888888888887664 65 67776543 33322 3355555554
No 173
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=23.58 E-value=1.4e+02 Score=20.46 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=40.2
Q ss_pred cEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhc-CCeEEEEcCCCCCCcHHHHHHHHHH
Q 017410 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-TGRLLISHEAPVTGGFGAEISASIL 314 (372)
Q Consensus 240 di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~-~~~vivvEe~~~~GGlg~~i~~~l~ 314 (372)
++++++. +....+.++...|++.|++...+++.. .|-..+.+.+.... .=.+++++.. ..||+. .|.+++.
T Consensus 2 ~i~~y~~-~~C~~C~~~~~~l~~~~i~~~~~~i~~-~~~~~~~~~~~~~~~~vP~l~~~g~-~i~g~~-~i~~~~~ 73 (82)
T 1fov_A 2 NVEIYTK-ETCPYCHRAKALLSSKGVSFQELPIDG-NAAKREEMIKRSGRTTVPQIFIDAQ-HIGGYD-DLYALDA 73 (82)
T ss_dssp CEEEEEC-SSCHHHHHHHHHHHHHTCCCEEEECTT-CSHHHHHHHHHHSSCCSCEEEETTE-EEESHH-HHHHHHH
T ss_pred cEEEEEC-CCChhHHHHHHHHHHCCCCcEEEECCC-CHHHHHHHHHHhCCCCcCEEEECCE-EEeCHH-HHHHHHH
Confidence 3445443 445677788888888899999999764 11111233332221 2245666544 567764 4555554
No 174
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=23.48 E-value=87 Score=24.74 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=23.9
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEee
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~ 272 (372)
.+++|+++|.+-..+ ++.|.+.|.++.+++.
T Consensus 8 ~~viIiG~G~~G~~l---a~~L~~~g~~v~vid~ 38 (140)
T 3fwz_A 8 NHALLVGYGRVGSLL---GEKLLASDIPLVVIET 38 (140)
T ss_dssp SCEEEECCSHHHHHH---HHHHHHTTCCEEEEES
T ss_pred CCEEEECcCHHHHHH---HHHHHHCCCCEEEEEC
Confidence 468999999876544 4567778999999985
No 175
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=23.41 E-value=2.1e+02 Score=29.78 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=29.6
Q ss_pred HHHcCCCCcEEEee---CCHHHHHHHHHHhHh-CCCcEEEEeccc
Q 017410 171 AFFCHVPGLKVVIP---RSPRQAKGLLLSCIR-DPNPVVFFEPKW 211 (372)
Q Consensus 171 a~l~~iP~l~V~~P---sd~~e~~~~l~~a~~-~~~Pv~ir~p~~ 211 (372)
..++.. ||.++.. .|..++..+++.|.+ .++|++|.....
T Consensus 225 ~~~~a~-G~~~~~V~DG~D~~al~~Al~~A~~~~~~P~lI~~~T~ 268 (700)
T 3rim_A 225 ARYRAY-GWHVQEVEGGENVVGIEEAIANAQAVTDRPSFIALRTV 268 (700)
T ss_dssp HHHHHH-TCEEEEEECTTCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred HHHHHc-CCeEEEECCCCCHHHHHHHHHHHHHcCCCCEEEEEEEE
Confidence 445544 6777765 588999999999987 589999965443
No 176
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=23.27 E-value=2.4e+02 Score=26.67 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=24.1
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEE
Q 017410 175 HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFF 207 (372)
Q Consensus 175 ~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~ir 207 (372)
.+|++.| .=.|+.++..+++.|++ .++|++|-
T Consensus 223 g~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe 258 (365)
T 2ozl_A 223 FIPGLRV-DGMDILCVREATRFAAAYCRSGKGPILME 258 (365)
T ss_dssp TSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3666553 55589999999998875 58999983
No 177
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=23.00 E-value=71 Score=32.07 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=23.9
Q ss_pred EEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q 017410 180 KVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (372)
Q Consensus 180 ~V~~Psd~~e~~~~l~~a~~~-~~Pv~i 206 (372)
..+...+..|+...++++++. ++|++|
T Consensus 508 ~~~~v~~~~el~~al~~a~~~~~gp~li 535 (568)
T 2wvg_A 508 KGLKAKTGGELAEAIKVALANTDGPTLI 535 (568)
T ss_dssp EEEEESBHHHHHHHHHHHHHCCSSCEEE
T ss_pred ceEEeCCHHHHHHHHHHHHhcCCCcEEE
Confidence 566678999999999999987 899998
No 178
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=22.94 E-value=1.5e+02 Score=22.29 Aligned_cols=68 Identities=12% Similarity=0.107 Sum_probs=44.3
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh---c--CCeEEEEcCCCCCCcHHHHH
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR---K--TGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~---~--~~~vivvEe~~~~GGlg~~i 309 (372)
.++++++. +....|.+|...|++.|++...+++....|-+ +.+.+.++ + +=+.++++.. ..||+....
T Consensus 19 ~~v~vy~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~-~~~~~~l~~~~g~~tvP~ifi~g~-~igG~~~~~ 91 (113)
T 3rhb_A 19 NTVVIYSK-TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQG-PQLQKVLERLTGQHTVPNVFVCGK-HIGGCTDTV 91 (113)
T ss_dssp SSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHH-HHHHHHHHHHHSCCSSCEEEETTE-EEESHHHHH
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHcCCCCeEEEeecCCCCh-HHHHHHHHHHhCCCCcCEEEECCE-EEcCcHHHH
Confidence 45666654 66788999999999999999999987753322 23333222 1 2355667655 478886543
No 179
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=22.83 E-value=1.5e+02 Score=26.28 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=33.2
Q ss_pred eCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHH
Q 017410 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV 287 (372)
Q Consensus 237 ~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~ 287 (372)
++++++||+.|.. +++.+..|.+.|.+|+++....-...+.+...+..
T Consensus 151 ~~~~vvViGgG~i---g~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~~ 198 (314)
T 4a5l_A 151 RNKVLMVVGGGDA---AMEEALHLTKYGSKVIILHRRDAFRASKTMQERVL 198 (314)
T ss_dssp TTSEEEEECSSHH---HHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHH
T ss_pred CCCeEEEECCChH---HHHHHHHHHHhCCeeeeecccccccccchhhhhhh
Confidence 4678999998875 56677788888999999985554444444443333
No 180
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=22.80 E-value=68 Score=21.54 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCC-ChHHHHHhhhhcC
Q 017410 347 KNKASCLESFKV-PAQHCCMNLTAHG 371 (372)
Q Consensus 347 ~~~~~~i~~~~~-~~~~~~~~~~~~~ 371 (372)
+..++++.++|| +.+++..+|.+.+
T Consensus 13 ~~~l~~L~~MGF~~~~~~~~AL~~t~ 38 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQALIATG 38 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 567788888888 8888777777654
No 181
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=22.71 E-value=1.2e+02 Score=27.28 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHhcCCeEEEEcCCCCCC
Q 017410 277 PWDKETVEASVRKTGRLLISHEAPVTG 303 (372)
Q Consensus 277 P~d~~~l~~~~~~~~~vivvEe~~~~G 303 (372)
..|.+.|.+.+++++- +++|+.+..|
T Consensus 154 ~~~~~~i~~l~~~~~~-li~D~a~~~~ 179 (382)
T 4hvk_A 154 IQPVEEISEVLAGKAA-LHIDATASVG 179 (382)
T ss_dssp BCCHHHHHHHHSSSSE-EEEECTTTBT
T ss_pred eCCHHHHHHHHHHcCE-EEEEhHHhcC
Confidence 4678889999988877 7777765444
No 182
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=22.60 E-value=1.4e+02 Score=27.85 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccchhHHHHhCCC---ceEec---chhHHHHHHHHHHHHhcCC
Q 017410 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKS---RVFNT---PLCEQGIVGFAIGLAAMGN 110 (372)
Q Consensus 43 ~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~~~~~~~~~p~---r~i~~---GIaE~~~vg~A~GlA~~G~ 110 (372)
...|.+...++++++.+|+++.=-.+.+|+|....-.++.| |+ +++|+ +..+..++--|+=++..|.
T Consensus 100 ~~~~~~~fe~l~~~~~~Ii~I~iSS~LSGTy~sA~~Aa~~~-~~~~I~ViDS~~~s~g~g~lv~~Aa~l~~~G~ 172 (315)
T 3fys_A 100 IGELVALYEELGKSYDAVISIHLSSGISGTFSSAAAADSMV-DNIDVYPFDSEISCLAQGFYALKAAELIKNGA 172 (315)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEESCTTTCSHHHHHHHGGGGC-SSCEEEEEECSSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCcHhHHHHHHHHHHHhC-CCCCEEEECCchhHHHHHHHHHHHHHHHHcCC
Confidence 46788888899988888999875544446776455566778 76 66775 5567777888888888886
No 183
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=22.59 E-value=1.3e+02 Score=26.34 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=37.1
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHh--cCCeEE
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR--KTGRLL 294 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~--~~~~vi 294 (372)
.+..|+-+|.+-......++.|.++|.+|.+++-....-.|.+.+.+.++ +.+.||
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vi 68 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVI 68 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEE
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEE
Confidence 34445555776666677788888889888777655445557778888777 444443
No 184
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=22.58 E-value=1.9e+02 Score=26.90 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCccccc----hhHHHHhCCC---ceEec---chhHHHHHHHHHHHHhcCC
Q 017410 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCT----TGLADRFGKS---RVFNT---PLCEQGIVGFAIGLAAMGN 110 (372)
Q Consensus 43 ~~a~~~~L~~l~~~d~~vv~i~aD~~~gg~~~~~----~~~~~~~~p~---r~i~~---GIaE~~~vg~A~GlA~~G~ 110 (372)
...|.+...++++++.+|++++=-.+.+|+|... +.+.++| |+ +++|+ ...+..++--|+=++..|.
T Consensus 101 ~~~~~~~f~~l~~~g~~Ii~I~iSS~LSGTy~sA~~Aa~~~~e~~-~~~~I~ViDS~~~s~g~g~lv~~Aa~l~~~G~ 177 (320)
T 3pl5_A 101 VGQFESYFRQSAENGQEVLYIAFSSVLSGTYQSAVMARDIVLEEY-PQASIEIVDTLAATGGEGYLAMLAAQAREEGK 177 (320)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCTHHHHHHHHHHHHHHHC-TTCCEEEEECCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCchHhHHHHHHHHHHHHHHhhC-CCCeEEEEcCCchHHHHHHHHHHHHHHHhcCC
Confidence 4678888888888888899887554544666533 2344578 76 67775 5677777778888888885
No 185
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=22.29 E-value=1.4e+02 Score=28.70 Aligned_cols=58 Identities=14% Similarity=0.081 Sum_probs=38.6
Q ss_pred eeCCcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeec-------------ccCCCCHHHHHHHHhcCCeEEEEc
Q 017410 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK-------------TLIPWDKETVEASVRKTGRLLISH 297 (372)
Q Consensus 236 ~~g~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~-------------~i~P~d~~~l~~~~~~~~~vivvE 297 (372)
..++++.|++.|........+++ +.|+++-+++.. .....|.+.|.+.+++.+ +|+.|
T Consensus 33 ~~~~~IlIlG~G~lg~~~~~aa~---~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D-~V~~~ 103 (419)
T 4e4t_A 33 LPGAWLGMVGGGQLGRMFCFAAQ---SMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCE-AVSTE 103 (419)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHH---HTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCS-EEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHH---HCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCC-EEEEc
Confidence 35678999998876655555554 459999888753 122346778888886665 45555
No 186
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.62 E-value=65 Score=24.06 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=22.3
Q ss_pred cHHHHHHHHhCCCChHHHHHhhhhcC
Q 017410 346 TKNKASCLESFKVPAQHCCMNLTAHG 371 (372)
Q Consensus 346 ~~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (372)
.+..++++.++||+..++..+|.+.+
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~ 54 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTS 54 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHc
Confidence 57888999999999999999987764
No 187
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=21.54 E-value=1.1e+02 Score=28.02 Aligned_cols=65 Identities=11% Similarity=-0.036 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCCceeEEeecccCC--------------------------------C--CHHHHHHHHhcCCeEEE
Q 017410 250 LSIMEQACLDAEKEGISCELIDLKTLIP--------------------------------W--DKETVEASVRKTGRLLI 295 (372)
Q Consensus 250 ~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P--------------------------------~--d~~~l~~~~~~~~~viv 295 (372)
...+..+++.|++.|-+|+++|+.-..+ + |.+...+.+...+.||+
T Consensus 39 ~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~aD~iv~ 118 (280)
T 4gi5_A 39 GALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSADIVAEQEKLLWADTVIF 118 (280)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcHHHHHHHHHHHhCCEEEE
Confidence 4456667788999999999999865332 1 22334455777787776
Q ss_pred EcCCCCCCcHHHHHHHHHHH
Q 017410 296 SHEAPVTGGFGAEISASILE 315 (372)
Q Consensus 296 vEe~~~~GGlg~~i~~~l~~ 315 (372)
+=--+ .+++...+..++-+
T Consensus 119 ~~P~~-w~~~Pa~lK~~iDr 137 (280)
T 4gi5_A 119 QFPLW-WFSMPAIMKGWIDR 137 (280)
T ss_dssp EEECB-TTBCCHHHHHHHHH
T ss_pred Eeccc-cccCcHHHHHHHHH
Confidence 65544 57777777766644
No 188
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=21.45 E-value=2.7e+02 Score=23.43 Aligned_cols=65 Identities=9% Similarity=-0.015 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHhc--CCceeEEeeccc--CCCCH-------------------------HHHHHHHhcCCeEEEEcCC
Q 017410 249 QLSIMEQACLDAEKE--GISCELIDLKTL--IPWDK-------------------------ETVEASVRKTGRLLISHEA 299 (372)
Q Consensus 249 ~~~~a~~Aa~~L~~~--Gi~v~vi~~~~i--~P~d~-------------------------~~l~~~~~~~~~vivvEe~ 299 (372)
+...+..+++.+++. |.+++++|+... .+++. +.+.+.+...+.||+.==-
T Consensus 18 t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~ 97 (212)
T 3r6w_A 18 SRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPM 97 (212)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEcCc
Confidence 334566677788877 899999998653 23332 2344557777777665433
Q ss_pred CCCCcHHHHHHHHHH
Q 017410 300 PVTGGFGAEISASIL 314 (372)
Q Consensus 300 ~~~GGlg~~i~~~l~ 314 (372)
+ .+++...+..++-
T Consensus 98 y-~~~~pa~lK~~iD 111 (212)
T 3r6w_A 98 Y-NFSVPSGLKAWID 111 (212)
T ss_dssp B-TTBCCHHHHHHHH
T ss_pred c-cccCCHHHHHHHH
Confidence 3 5777777766664
No 189
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=21.45 E-value=2.4e+02 Score=23.91 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCceeEEeecccCCCC-HHHHHHHHh--cCCeEEEEcCCC
Q 017410 250 LSIMEQACLDAEKEGISCELIDLKTLIPWD-KETVEASVR--KTGRLLISHEAP 300 (372)
Q Consensus 250 ~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d-~~~l~~~~~--~~~~vivvEe~~ 300 (372)
-....++++.++++|+++.+|.+-.-..=+ .+.+.+... ....++.+-++.
T Consensus 121 ~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~l~~la~~~n~~~~s~~~~~~~~~ 174 (192)
T 2x5n_A 121 EKNLIRLAKRMKKNNVAIDIIHIGELQNESALQHFIDAANSSDSCHLVSIPPSP 174 (192)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEESCC---CHHHHHHHHHCSTTCCEEEEECCCS
T ss_pred chhHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHhccCCCceEEEEecCcc
Confidence 356778899999999999999998754321 223333333 123666666653
No 190
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.30 E-value=55 Score=23.07 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCChHHHHHhhhhc
Q 017410 347 KNKASCLESFKVPAQHCCMNLTAH 370 (372)
Q Consensus 347 ~~~~~~i~~~~~~~~~~~~~~~~~ 370 (372)
++.++++.++||+...+..+|.+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t 33 (64)
T 1whc_A 10 LTALESLIEMGFPRGRAEKALALT 33 (64)
T ss_dssp CCHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 556677777888887777777665
No 191
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=21.25 E-value=2.5e+02 Score=27.97 Aligned_cols=26 Identities=8% Similarity=-0.072 Sum_probs=22.0
Q ss_pred EEeeCCHHHHHHHHHH-hHhCCCcEEE
Q 017410 181 VVIPRSPRQAKGLLLS-CIRDPNPVVF 206 (372)
Q Consensus 181 V~~Psd~~e~~~~l~~-a~~~~~Pv~i 206 (372)
.+...+..|+...+++ +.+.++|++|
T Consensus 519 ~~~v~~~~el~~al~~a~~~~~~p~li 545 (570)
T 2vbf_A 519 SKIVRTENEFVSVMKEAQADVNRMYWI 545 (570)
T ss_dssp EEEECBHHHHHHHHHHHHHCTTSEEEE
T ss_pred eEEecCHHHHHHHHHHHHhcCCCcEEE
Confidence 5666899999999998 4677899998
No 192
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=21.21 E-value=1.1e+02 Score=25.02 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=20.8
Q ss_pred EEEeChhH----HHHHHHHHHHHhcCCceeEEeecccC
Q 017410 243 LVGWGAQL----SIMEQACLDAEKEGISCELIDLKTLI 276 (372)
Q Consensus 243 ii~~G~~~----~~a~~Aa~~L~~~Gi~v~vi~~~~i~ 276 (372)
+|.|+|++ ..|...++.|.+.|+++.++++....
T Consensus 13 ~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~ 50 (167)
T 1ykg_A 13 TIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK 50 (167)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCC
T ss_pred EEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCC
Confidence 33455544 44555555566668899998876543
No 193
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=21.07 E-value=3e+02 Score=21.65 Aligned_cols=67 Identities=18% Similarity=0.069 Sum_probs=44.2
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhc---CCceeEEeecccCCCCHHHHHHHHh-----cCCeEEEEcCCCCCCcHHHHH
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKE---GISCELIDLKTLIPWDKETVEASVR-----KTGRLLISHEAPVTGGFGAEI 309 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~---Gi~v~vi~~~~i~P~d~~~l~~~~~-----~~~~vivvEe~~~~GGlg~~i 309 (372)
.+++|++. +....|.+|.+.|++. |++..++++.... |.+.+.+.++ .+=..|+|..- ..||+....
T Consensus 14 ~~Vvvysk-~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~--d~~~~~~~l~~~~G~~tVP~IfI~G~-~IGG~ddl~ 88 (127)
T 3l4n_A 14 SPIIIFSK-STCSYSKGMKELLENEYQFIPNYYIIELDKHG--HGEELQEYIKLVTGRGTVPNLLVNGV-SRGGNEEIK 88 (127)
T ss_dssp CSEEEEEC-TTCHHHHHHHHHHHHHEEEESCCEEEEGGGST--THHHHHHHHHHHHSCCSSCEEEETTE-ECCCHHHHH
T ss_pred CCEEEEEc-CCCccHHHHHHHHHHhcccCCCcEEEEecCCC--CHHHHHHHHHHHcCCCCcceEEECCE-EEcCHHHHH
Confidence 45777775 6668899999999875 6788999987631 3344444442 23356778665 469986543
No 194
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=20.36 E-value=3.8e+02 Score=24.75 Aligned_cols=78 Identities=10% Similarity=-0.028 Sum_probs=54.8
Q ss_pred CcEEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcC---CeEEEEcCCCCCCcHHHHHHHHHHH
Q 017410 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT---GRLLISHEAPVTGGFGAEISASILE 315 (372)
Q Consensus 239 ~di~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~---~~vivvEe~~~~GGlg~~i~~~l~~ 315 (372)
....+|+.|..-. +-+-.+.+.+.++.++.|=....-|++.+.+.+++.++ -..+++|.-...|.-=+.|.+.+.+
T Consensus 210 ~~~~~iG~GGgHY-apr~t~~~l~~~~~~GHi~pky~l~~~~e~l~~ai~~~~~~~~~~~iD~K~~k~~~R~~i~~~l~~ 288 (298)
T 2gfq_A 210 KFKVALGIGGGHY-APKQTKRALEGDLAFGHILPKYAQPVSRDVMIKALNRFGEKVEAIYVDWKGSRGETRQLAKSLAQE 288 (298)
T ss_dssp TCEEEEEECSCTT-CHHHHHHHHHSSEEEEEEECGGGCCCCHHHHHHHHTCBSSCCCEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCc-ChHHHHHHhhCCeeEEeeccccchhcCHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHHHHHHH
Confidence 3467888876533 33334444556889999999988889999999998772 3456788755556566677777777
Q ss_pred hc
Q 017410 316 RC 317 (372)
Q Consensus 316 ~~ 317 (372)
.+
T Consensus 289 lg 290 (298)
T 2gfq_A 289 LG 290 (298)
T ss_dssp HT
T ss_pred CC
Confidence 65
No 195
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=20.12 E-value=35 Score=27.61 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=26.0
Q ss_pred CCcEEEEEeChhHHH-HHHHHHHHHhcCCceeEEee
Q 017410 238 GSDITLVGWGAQLSI-MEQACLDAEKEGISCELIDL 272 (372)
Q Consensus 238 g~di~ii~~G~~~~~-a~~Aa~~L~~~Gi~v~vi~~ 272 (372)
..|++||++|..... --+..+.|++.||.+++.+-
T Consensus 68 ~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T 103 (128)
T 2fi9_A 68 QIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMST 103 (128)
T ss_dssp GCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCH
Confidence 368999999987422 23455678888999998874
No 196
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.03 E-value=2.1e+02 Score=21.97 Aligned_cols=69 Identities=12% Similarity=0.167 Sum_probs=38.5
Q ss_pred EEEEEeChhHHHHHHHHHHHHhcCCceeEEeecccCCCCHHHHHHHHhcCCeEEE---EcCCCCCCcHHHHHHHHHHHh
Q 017410 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLI---SHEAPVTGGFGAEISASILER 316 (372)
Q Consensus 241 i~ii~~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~i~P~d~~~l~~~~~~~~~viv---vEe~~~~GGlg~~i~~~l~~~ 316 (372)
++|+.+..--....+-.+.++++|+++.-++-++ .+ .+.|.+.++++...++ +++- -|++.-...+..-
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspq--el-kdsieelvkkynativvvvvddk----ewaekairfvksl 74 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQ--EL-KDSIEELVKKYNATIVVVVVDDK----EWAEKAIRFVKSL 74 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHH--HH-HHHHHHHTTCCCCEEEEEECSSH----HHHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHH--HH-HHHHHHHHHHhCCeEEEEEEccH----HHHHHHHHHHHhc
Confidence 3444444444445555667788898887765332 12 3567888888764332 2332 2666544444443
Done!