BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017412
         (372 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
           Anthracis
 pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
           Anthracis
 pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
           Anthracis
          Length = 281

 Score = 32.0 bits (71), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 90  YSWQPASCAVPR--------FDGGDF---LRRYRGKRIMFVGDSLSLNMWESLSCMIHAS 138
           Y+W  A+ A P+        F   DF   L ++    ++  GDS +   +E    + H +
Sbjct: 188 YNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEA 247

Query: 139 VPNAKTSFVRK--ETLSSVSFEEYGVTLLLY 167
           +PN+K + ++     L++   +E+   LLL+
Sbjct: 248 IPNSKVALIKGGPHGLNATHAKEFNEALLLF 278


>pdb|3K1Q|D Chain D, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
           Microscopy And Bioinformatics
 pdb|3K1Q|E Chain E, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
           Microscopy And Bioinformatics
 pdb|3IYL|U Chain U, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
           How Penetration Protein Is Primed For Cell Entry
 pdb|3IYL|V Chain V, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
           How Penetration Protein Is Primed For Cell Entry
          Length = 412

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 261 FQGISPTHYTGKEWNSRKKNCLGELEPLSGSTYPGGAPPA--ASVVNKVLSSINKPVYLL 318
           F G   T + G  W   +   L  L P+     P   PP   A   N +L S N P Y+L
Sbjct: 79  FAGGQITSHQGITW---RDPVLSSLAPV-----PAIQPPPVWAVAENVLLDSNNYPTYVL 130

Query: 319 DITTLSQLRKDAH 331
           +++++  + +D H
Sbjct: 131 NLSSMWPINQDVH 143


>pdb|2QK7|B Chain B, A Covalent S-f Heterodimer Of Staphylococcal
           Gamma-hemolysin
          Length = 307

 Score = 28.5 bits (62), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
           ++ VS ++    + LY+T    D  K K+ ++LT N I+   + KD  VL
Sbjct: 12  ITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVL 61


>pdb|3B07|A Chain A, Crystal Structure Of Octameric Pore Form Of
           Gamma-Hemolysin From Staphylococcus Aureus
 pdb|3B07|C Chain C, Crystal Structure Of Octameric Pore Form Of
           Gamma-Hemolysin From Staphylococcus Aureus
 pdb|3B07|E Chain E, Crystal Structure Of Octameric Pore Form Of
           Gamma-Hemolysin From Staphylococcus Aureus
 pdb|3B07|G Chain G, Crystal Structure Of Octameric Pore Form Of
           Gamma-Hemolysin From Staphylococcus Aureus
          Length = 309

 Score = 28.1 bits (61), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
           ++ VS ++    + LY+T    D  K K+ ++LT N I+   + KD  VL
Sbjct: 14  ITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVL 63


>pdb|1LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
 pdb|2LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
 pdb|3LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus With
           Phosphocholine Bound
          Length = 299

 Score = 28.1 bits (61), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
           ++ VS ++    + LY+T    D  K K+ ++LT N I+   + KD  VL
Sbjct: 4   ITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVL 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,810,878
Number of Sequences: 62578
Number of extensions: 516349
Number of successful extensions: 1393
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 10
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)