BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017412
         (372 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P50817|VL1_HPV48 Major capsid protein L1 OS=Human papillomavirus type 48 GN=L1 PE=3
           SV=2
          Length = 513

 Score = 33.5 bits (75), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 14/100 (14%)

Query: 211 HTGKAQPWDYIQDGQTLLKDMDRLE--AFYKGMSTWARWVDLNVDPSQTKVFFQGISPTH 268
             G+  P      G  LL  +   E  +FY G  T     ++++DP Q+++   G +P  
Sbjct: 105 EVGRGGPLGVGSTGHPLLNKIGDTENPSFYLGEQTKDERQNVSMDPKQSQILIVGCAPA- 163

Query: 269 YTGKEWNSRKKNCLGELEPLSGSTYPGGAPPAASVVNKVL 308
            TG+ W+  K     +LE         GA P   +VN V+
Sbjct: 164 -TGEYWDLAKP--CNDLE--------NGAAPPIQLVNTVI 192


>sp|O49312|YUC7_ARATH Putative flavin-containing monooxygenase YUCCA7 OS=Arabidopsis
           thaliana GN=YUC7 PE=3 SV=1
          Length = 431

 Score = 32.7 bits (73), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 19/99 (19%)

Query: 93  QPASCAVPRFDG-----GDFL--------RRYRGKRIMFVGDSLSLNMWESLSCMIHASV 139
           + A   VP F+G     GD L         RYRGKR++ VG   S  M  SL    H + 
Sbjct: 167 ENAEKVVPEFEGLEDFGGDVLHAGDYKSGERYRGKRVLVVGCGNS-GMEVSLDLCNHDAS 225

Query: 140 PN----AKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVD 174
           P+    +    + +E L   +F E  VT++ +   +LVD
Sbjct: 226 PSMVVRSSVHVLPREVLGKSTF-ELSVTMMKWMPVWLVD 263


>sp|O07600|FABH2_BACSU 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 OS=Bacillus
           subtilis (strain 168) GN=fabHB PE=2 SV=1
          Length = 325

 Score = 31.6 bits (70), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 26/102 (25%)

Query: 118 FVGDSLSLNMWESLSCMIHASVPNAKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVK 177
           FV  S +L M ES+           KT F  ++TL+SV  E YG T              
Sbjct: 247 FVPHSANLRMIESIC---------EKTPFPIEKTLTSV--EHYGNT-------------- 281

Query: 178 QKVGRVLTLN-SIQAGKFWKDMDVLIFNSWHWWTHTGKAQPW 218
             V  VL L+ +++AGK  KD  VL+F      T+TG    W
Sbjct: 282 SSVSIVLALDLAVKAGKLKKDQIVLLFGFGGGLTYTGLLIKW 323


>sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae
           GN=rme-6 PE=3 SV=1
          Length = 1104

 Score = 31.6 bits (70), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 145 SFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDV 200
           + +RKET  S  F +Y V  +     YL   +++ V     LN IQ G FW D+D+
Sbjct: 179 TMLRKETSISTRFYKYFVEQMHPTMVYLTKALRKSV-----LNVIQLGNFWLDVDM 229


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,418,839
Number of Sequences: 539616
Number of extensions: 6302337
Number of successful extensions: 12349
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12348
Number of HSP's gapped (non-prelim): 4
length of query: 372
length of database: 191,569,459
effective HSP length: 119
effective length of query: 253
effective length of database: 127,355,155
effective search space: 32220854215
effective search space used: 32220854215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)