BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017413
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|J Chain J, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|L Chain L, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|N Chain N, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|P Chain P, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|B Chain B, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|D Chain D, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|F Chain F, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|H Chain H, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|J Chain J, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|L Chain L, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|N Chain N, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|P Chain P, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 354
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/337 (56%), Positives = 247/337 (73%), Gaps = 12/337 (3%)
Query: 43 TATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTW---ESLESVR 99
T + GDGIGPEI++SVK++F A VP+EWE ++ P + LT +++S+
Sbjct: 23 TVSFIEGDGIGPEISKSVKKIFSAANVPIEWES----CDVSPIFVNGLTTIPDPAVQSIT 78
Query: 100 RNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENT 159
+N V LKGP+ATPIGKGHRSLNLTLRK L+ANVRP S+ G+KT Y++V+L+ IRENT
Sbjct: 79 KNLVALKGPLATPIGKGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENT 138
Query: 160 EGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDG 219
EGEYSG+EH V GVV+S+K+ITR AS RV YAF YA+ GR RV +HK+ I + DG
Sbjct: 139 EGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADG 198
Query: 220 LFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGL- 276
LF+ +E++++YP++T E +IDN + +V NP+A+ V V PNLYGDI+SDL +GL
Sbjct: 199 LFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLS 258
Query: 277 IGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADR 336
G LGLTPS NIG I++ EAVHGSAPDIAG++ ANPTALLLSSV ML H+ L + AD+
Sbjct: 259 AGSLGLTPSANIGH-KISIFEAVHGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHADQ 317
Query: 337 IQNAILSTIAEG-KYRTADLGGSSTTSDFTKAICDHL 372
IQNA+LSTIA G + RT DL G++TTS FT+A+ L
Sbjct: 318 IQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIKRL 354
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 188/337 (55%), Positives = 245/337 (72%), Gaps = 12/337 (3%)
Query: 43 TATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTW---ESLESVR 99
T + GDGIGPEI++SVK++F A VP+EWE ++ P + LT +++S+
Sbjct: 23 TVSFIEGDGIGPEISKSVKKIFSAANVPIEWES----CDVSPIFVNGLTTIPDPAVQSIT 78
Query: 100 RNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENT 159
+N V LKGP+ATPIGKGHRSLNLTLRK L+ANVRP S+ G+KT Y++V+L+ IRENT
Sbjct: 79 KNLVALKGPLATPIGKGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENT 138
Query: 160 EGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDG 219
EGEYSG+EH V GVV+S+K+ITR AS RV YAF YA+ GR RV +HK+ I + DG
Sbjct: 139 EGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADG 198
Query: 220 LFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGL- 276
LF+ +E++++YP++T E +IDN + +V NP+A+ V V PNLYGDI+SDL +GL
Sbjct: 199 LFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLS 258
Query: 277 IGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADR 336
G LGLTPS NIG I++ EAVHGSAPDIAG++ ANPTALLLSSV L H L + AD+
Sbjct: 259 AGSLGLTPSANIGH-KISIFEAVHGSAPDIAGQDKANPTALLLSSVXXLNHXGLTNHADQ 317
Query: 337 IQNAILSTIAEG-KYRTADLGGSSTTSDFTKAICDHL 372
IQNA+LSTIA G + RT DL G++TTS FT+A+ L
Sbjct: 318 IQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIKRL 354
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 317 bits (811), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 160/333 (48%), Positives = 216/333 (64%), Gaps = 6/333 (1%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRN 101
T TL PGDG+G EI +SV+ +F +P++WE I +E++ES++RN
Sbjct: 18 FTVTLIPGDGVGKEITDSVRTIFEAENIPIDWET----INIKQTDHKEGVYEAVESLKRN 73
Query: 102 KVGLKGPMATPIGK-GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTE 160
K+GLKG TP + GH SLN+ LRK+L++YANV SL G KTR D++LI IRENTE
Sbjct: 74 KIGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTE 133
Query: 161 GEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGL 220
GE+SGLEH+ V GVVESLK++TR + R+A +AF +AK + R+ V+A+HKANIM+ DGL
Sbjct: 134 GEFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGL 193
Query: 221 FLKCCREVAEK-YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGG 279
F E+ +K YP+I +++DN M V P FDVLV P++YG I+ ++ A LIGG
Sbjct: 194 FRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGG 253
Query: 280 LGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQN 339
GL N G DI G+N+ANPTA++LSS ML HL L++ A RI
Sbjct: 254 PGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRISK 313
Query: 340 AILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
A+ TIAEGK+ T D+GGSS+T+DFT I + L
Sbjct: 314 AVHETIAEGKHTTRDIGGSSSTTDFTNEIINKL 346
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 304 bits (779), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 157/333 (47%), Positives = 210/333 (63%), Gaps = 6/333 (1%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRN 101
T TL PGDG+G EI +SV+ +F +P++WE I +E++ES++RN
Sbjct: 18 FTVTLIPGDGVGKEITDSVRTIFEAENIPIDWET----INIKQTDHKEGVYEAVESLKRN 73
Query: 102 KVGLKGPMATPIGK-GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTE 160
K+GLKG TP + GH SLN+ LRK+L++YANV SL G KTR D++LI IRENTE
Sbjct: 74 KIGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTE 133
Query: 161 GEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGL 220
GE+SGLEH+ V GVVESLK+ TR + R+A +AF +AK + R+ V+A+HKANI + DGL
Sbjct: 134 GEFSGLEHESVPGVVESLKVXTRPKTERIARFAFDFAKKYNRKSVTAVHKANIXKLGDGL 193
Query: 221 FLKCCREVAEK-YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGG 279
F E+ +K YP+I +++DN V P FDVLV P+ YG I+ ++ A LIGG
Sbjct: 194 FRNIITEIGQKEYPDIDVSSIIVDNASXQAVAKPHQFDVLVTPSXYGTILGNIGAALIGG 253
Query: 280 LGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQN 339
GL N G DI G+N+ANPTA +LSS L HL L++ A RI
Sbjct: 254 PGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAXILSSTLXLNHLGLNEYATRISK 313
Query: 340 AILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
A+ TIAEGK+ T D+GGSS+T+DFT I + L
Sbjct: 314 AVHETIAEGKHTTRDIGGSSSTTDFTNEIINKL 346
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 283 bits (725), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 146/334 (43%), Positives = 213/334 (63%), Gaps = 7/334 (2%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPR-TQSFLTWESLESVRRNKV 103
T+ PGDGIGPE E+ +V A+ P+ +E G + R S + E++ES+R+ +V
Sbjct: 23 TVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRV 82
Query: 104 GLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY--DDVNLITIRENTEG 161
LKGP+ TP+G G +S N+TLRK YANVRP P T Y ++L+ +REN E
Sbjct: 83 VLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVED 142
Query: 162 EYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLF 221
Y+G+EH V ++LK+I+ + S ++ +AF A+ GR++V K+NIM+ +G
Sbjct: 143 LYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTL 202
Query: 222 LKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLG 281
+ +VA++YP+I +++DN LVK P F+V+V N+ GDI+SDL +GLIGGLG
Sbjct: 203 KRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLG 262
Query: 282 LTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI 341
PS NIG +A+ EAVHGSAP AGKN+ NPTA+LLS+V MLR+LE AD I+NA+
Sbjct: 263 FAPSANIG-NEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENAL 321
Query: 342 LSTIAEGKYRTADLGG---SSTTSDFTKAICDHL 372
L T+ EG+ T D+ G + T+++T+AI +L
Sbjct: 322 LYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNL 355
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 203/343 (59%), Gaps = 21/343 (6%)
Query: 42 ITATLFPGDGIGPEIAESVKQVF----RTAEVPVEWEEHYVGTEIDPRTQSFLTWESLES 97
T L GDGIGPEI K++ +P+E+ E G R L +SL+
Sbjct: 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKI 61
Query: 98 VRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRE 157
+ + + LKGP +G+ + + LR+ ++YAN+RP S+PG T+Y +V+++ +RE
Sbjct: 62 IDKADIILKGP----VGESAADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRE 117
Query: 158 NTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKT 217
NTE Y G EH V GV +KIITR AS R+A+ ++A R++V+ +HKAN+M+ T
Sbjct: 118 NTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA-LRRRKKVTCVHKANVMRIT 176
Query: 218 DGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLI 277
DGLF + CR V + ++ Y E+ +D LV+NP FDV+V N+YGDI+SD + +
Sbjct: 177 DGLFAEACRSVLK--GKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIA 234
Query: 278 GGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML--RHLELHD--- 332
G LG+ PS NIG+ AL E VHG+A DIAGKN+ NPTA LL SV+M+ R EL +
Sbjct: 235 GSLGIAPSANIGDKK-ALFEPVHGAAFDIAGKNIGNPTAFLL-SVSMMYERMYELSNDDR 292
Query: 333 --KADR-IQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
KA R ++NAI E K T D+GG++TT D I + L
Sbjct: 293 YIKASRALENAIYLVYKERKALTPDVGGNATTDDLINEIYNKL 335
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 136/329 (41%), Positives = 195/329 (59%), Gaps = 6/329 (1%)
Query: 46 LFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGL 105
L GDGIG E+ + ++V +P+E+ E G E R + + E++E + L
Sbjct: 7 LIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATL 66
Query: 106 KGPMATPIGK--GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEY 163
G +P K G LR+ L+LYANVRP S P +R V+L+ +RENTEG Y
Sbjct: 67 FGAATSPTRKVPGFFGAIRYLRRRLDLYANVRPAKSRPVPGSR-PGVDLVIVRENTEGLY 125
Query: 164 SGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLK 223
E + + V + +I+++AS R+ A A+ R+ + HKAN++ T GLFL
Sbjct: 126 VEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLD 184
Query: 224 CCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLT 283
+EVA+ +P + +++++DNC M LV P FDV+V NL GDI+SDL AGL+GGLGL
Sbjct: 185 TVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLA 244
Query: 284 PSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILS 343
PS NIG+ A+ E VHGSAPDIAGK +ANPTA +LS+ ML +L + A R++ A+
Sbjct: 245 PSGNIGD-TTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDL 303
Query: 344 TIAEGKYRTADLGGSSTTSDFTKAICDHL 372
+ G RT DLGG +TT FT+A+ + L
Sbjct: 304 VLERGP-RTPDLGGDATTEAFTEAVVEAL 331
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 234 bits (597), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 136/329 (41%), Positives = 195/329 (59%), Gaps = 6/329 (1%)
Query: 46 LFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGL 105
L GDGIG E+ + ++V +P+E+ E G E R + + E++E + L
Sbjct: 6 LIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATL 65
Query: 106 KGPMATPIGK--GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEY 163
G +P K G LR+ L+LYANVRP S P +R V+L+ +RENTEG Y
Sbjct: 66 FGAATSPTRKVPGFFGAIRYLRRRLDLYANVRPAKSRPVPGSR-PGVDLVIVRENTEGLY 124
Query: 164 SGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLK 223
E + + V + +I+++AS R+ A A+ R+ + HKAN++ T GLFL
Sbjct: 125 VEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLD 183
Query: 224 CCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLT 283
+EVA+ +P + +++++DNC M LV P FDV+V NL GDI+SDL AGL+GGLGL
Sbjct: 184 TVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLA 243
Query: 284 PSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILS 343
PS NIG+ A+ E VHGSAPDIAGK +ANPTA +LS+ ML +L + A R++ A+
Sbjct: 244 PSGNIGD-TTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDL 302
Query: 344 TIAEGKYRTADLGGSSTTSDFTKAICDHL 372
+ G RT DLGG +TT FT+A+ + L
Sbjct: 303 VLERGP-RTPDLGGDATTEAFTEAVVEAL 330
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 192/329 (58%), Gaps = 6/329 (1%)
Query: 46 LFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGL 105
L GDGIG E+ + ++V +P+E+ E G E R + + E++ + L
Sbjct: 7 LIEGDGIGYEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVVKILSCHATL 66
Query: 106 KGPMATPIGK--GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEY 163
G P K G + LR+ L+LYANVRP S P +R V+L+ +RENTEG Y
Sbjct: 67 FGAATIPTRKVPGFFGAIMALRRRLDLYANVRPAKSRPVPGSR-PGVDLVIVRENTEGLY 125
Query: 164 SGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLK 223
E + + V + +I+++AS R+ A A+ R+ + HKAN++ T GLFL
Sbjct: 126 VEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLD 184
Query: 224 CCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLT 283
+EVA+ +P + +++++DNC LV P +DV+V NL GDI+SDL AGL+GGLGL
Sbjct: 185 TVKEVAKDFPLVNVQDIIVDNCATQLVMRPERYDVIVTTNLLGDILSDLAAGLMGGLGLA 244
Query: 284 PSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILS 343
PS NIG+ A+ E VHGSAPDIAGK +ANPTA +LS+ ML +L + A R++ A+
Sbjct: 245 PSGNIGD-TTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDL 303
Query: 344 TIAEGKYRTADLGGSSTTSDFTKAICDHL 372
+ G T DLGG +TT FT+A+ + L
Sbjct: 304 VLERGPM-TPDLGGDATTEAFTEAVVEAL 331
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 131/359 (36%), Positives = 192/359 (53%), Gaps = 33/359 (9%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDP------RTQSFLTWESL 95
I L P DGIG E+ + +++ +P + + + ++D RT L ++
Sbjct: 11 IVLGLIPADGIGKEVVPAARRLMEN--LPAKHKLKFDFIDLDAGWGTFERTGKALPERTV 68
Query: 96 ESVRRN-KVGLKGPMATPIGK--GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNL 152
E ++ L G + +P K G+ S + LRK++ LYANVRP SL G K + V+L
Sbjct: 69 ERLKTECNAALFGAVQSPTHKVAGYSSPIVALRKKMGLYANVRPVKSLDGAKGK--PVDL 126
Query: 153 ITIRENTEGEYSGLEHQVV----RGVVESLKIITRQASLRVAEYAFHYAKT--------- 199
+ +RENTE Y E V + V E+++ I+ +AS ++ + AF AK+
Sbjct: 127 VIVRENTECLYVKEERMVQNTPGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGT 186
Query: 200 ---HGRERVSAIHKANIMQKTDGLFLKCCREVAE---KYPEITYEEVVIDNCCMMLVKNP 253
H + V+ IHK+N+M TDGLF + CR Y I +E ++D+ L + P
Sbjct: 187 YSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFREP 246
Query: 254 AAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLAN 313
FDV+V PNLYGDI+SD A LIG LGL PS N+G+ ++E VHGSAPDIAG+ +AN
Sbjct: 247 ECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGD-NFVMSEPVHGSAPDIAGRGIAN 305
Query: 314 PTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
P A S ML + D A I A+ + EGK T DLGG S T++ T A+ ++
Sbjct: 306 PVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANI 364
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 132/381 (34%), Positives = 199/381 (52%), Gaps = 59/381 (15%)
Query: 47 FPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK 102
F GDGIG ++ + +V A V W + Y G + ++L ++L +++ +
Sbjct: 33 FEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFR 92
Query: 103 VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT---RYDDVNLITIRENT 159
V LKGP+ TP+G G+RSLN+T+R+ L+LYANVRP Y L G + + VN + RENT
Sbjct: 93 VALKGPLTTPVGGGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENT 152
Query: 160 EGEYSGLEHQVVRGVVESLKI----------------------ITRQASLRVAEYAFHYA 197
E Y+G+E RG E+LK+ I+ A+ R+ A YA
Sbjct: 153 EDVYAGIEWP--RGSEEALKLIRFLKNEFGVTIREDSGIGIKPISEFATKRLVRMAIRYA 210
Query: 198 KTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-------------------KYPE--IT 236
+ R+ V+ +HK NIM+ T+G F EVA+ K PE I
Sbjct: 211 IENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIV 270
Query: 237 YEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALA 296
++ + DN ++ +DV+ +PNL GD +SD A LIGGLG+ P NIG+ GI +
Sbjct: 271 VKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIGD-GIGVF 329
Query: 297 EAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTAD-- 354
E VHGSAP AG+N NPTA +L+ M ++ D ++ I+ A+ TI+ G T D
Sbjct: 330 EPVHGSAPKYAGQNKVNPTAEILTGALMFEYIGWKDASEMIKKAVEMTISSG-IVTYDIH 388
Query: 355 --LGGSST-TSDFTKAICDHL 372
+GG+ T +F +A+ ++L
Sbjct: 389 RHMGGTKVGTREFAEAVVENL 409
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/390 (33%), Positives = 197/390 (50%), Gaps = 60/390 (15%)
Query: 40 TPITATLFPGDGIGPEIAES--------VKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLT 91
P+ A GDG+GPE+ ES VK+V+ + V WE G + L
Sbjct: 35 NPVVA-FIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWE-LLAGHLAREKCGELLP 92
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC--YSLPGYKTRYDD 149
+LE +R +V LKGP+ TP+G G+RSLN+ +R+ L+LYAN+RP Y P D
Sbjct: 93 KATLEGIRLARVALKGPLETPVGTGYRSLNVAIRQALDLYANIRPVRYYGQPAPHKYADR 152
Query: 150 VNLITIRENTEGEYSGLEH--------QVVRGVVESLKI------------ITRQASLRV 189
V+++ RENTE Y+G+E ++ R + E I I+R A+ R+
Sbjct: 153 VDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGISIREDAGIGVKPISRFATRRL 212
Query: 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPE--ITYEEV------ 240
E A +A +G V+ +HK NIM+ T+G F++ EVA EK+ E +T +EV
Sbjct: 213 MERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGG 272
Query: 241 ------------VIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNI 288
+ DN ++ P + V+V PNL GD ISD + L+GG+G+ N+
Sbjct: 273 VRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNM 332
Query: 289 GEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEG 348
G+ GIA+AE VHG+AP AGK+L NP+A +LS+ ++ + I + +
Sbjct: 333 GD-GIAVAEPVHGTAPKYAGKDLINPSAEILSASLLIGEFMGWREVKSIVEYAIRKAVQS 391
Query: 349 KYRTADLGGSST------TSDFTKAICDHL 372
K T DL TS++T+ + ++
Sbjct: 392 KKVTQDLARHMPGVQPLRTSEYTETLIAYI 421
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 187 bits (476), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 185/349 (53%), Gaps = 49/349 (14%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRN 101
GDGIGPEI + +V A ++W E Y G + + E+ E + +
Sbjct: 32 GDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKY 91
Query: 102 KVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIREN 158
+V LKGP+ TPIGKG +S+N+ +R L+LYAN+RP + G ++ + V++I REN
Sbjct: 92 RVVLKGPLETPIGKGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMIIFREN 151
Query: 159 TEGEYSGLEH-------QVVRGVVES-------------LKIITRQASLRVAEYAFHYAK 198
T+ Y G+E+ + +R + +K++++ + R+ A YA
Sbjct: 152 TDDLYRGIEYPFNSEEAKKIRDFLRKELKVEIEDDTGIGIKVMSKYKTQRITRLAIQYAI 211
Query: 199 THGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPE--ITYEEV--------------- 240
H R++V+ +HK N+M+ T+G F + EVA ++Y + +T EE+
Sbjct: 212 EHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKPDQGKIILNDR 271
Query: 241 VIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVH 300
+ DN ++ P +D+++ PN+ GD ISD LIG +G+ NIG+ G + EA+H
Sbjct: 272 IADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIGDEG-GMFEAIH 330
Query: 301 GSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGK 349
G+AP AGKN+ANPT ++ + MLR + ++ AD I+ AI I + K
Sbjct: 331 GTAPKYAGKNVANPTGIIKAGELMLRWMGWNEAADLIEKAINMAIRDKK 379
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 177/368 (48%), Gaps = 67/368 (18%)
Query: 46 LFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESV 98
GDG GP+I + +V A E + W+E Y G + +T +L E+L+ +
Sbjct: 24 FIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVI 83
Query: 99 RRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT---RYDDVNLITI 155
R + +KGP+ TP+G G RSLN+ LR+EL+L+ +RP G + R +D +++
Sbjct: 84 REYFIAIKGPLTTPVGGGIRSLNVALRQELDLFVXLRPVRYFTGVPSPVKRPEDTDMVIF 143
Query: 156 RENTEGEYSGLEHQVVRGVVESL-----------------------KIITRQASLRVAEY 192
RENTE Y+G+E+ V+ L K ++ + + R+
Sbjct: 144 RENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLVRA 203
Query: 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK-----------YPEITYEE-- 239
A YA HGR+ V+ +HK NIM+ T+G F E+AEK Y I E+
Sbjct: 204 AIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGK 263
Query: 240 --------------------VVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGG 279
+ D ++ P FDV+ NL GD ISD A +GG
Sbjct: 264 DAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGG 323
Query: 280 LGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQ 338
+G+ P NI E G A+ EA HG+AP AG + NP++++LS V +L HL ++ AD +
Sbjct: 324 IGIAPGANINYETGHAIFEATHGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEAADLVI 383
Query: 339 NAILSTIA 346
++ TIA
Sbjct: 384 KSMEKTIA 391
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 122/357 (34%), Positives = 194/357 (54%), Gaps = 34/357 (9%)
Query: 46 LFPGDGIGPEIAESVKQVFRTAEV----PVEWEEHYVGTEIDPRTQSFLTWESLESVRRN 101
+ PGDGIGPE+ E+ +V + E+E +G + L E+L+ R +
Sbjct: 28 VLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGS 87
Query: 102 KVGLKGPMATPIGKGHRSLN------LTLRKELNLYANVRPCY-------SLPGYKTRYD 148
L G + P + S L +RK L+L+AN+RP + P K +
Sbjct: 88 DAILLGAVGGPKWDQNPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADASPLKKEVIE 147
Query: 149 DVNLITIRENTEGEYSGLEHQVVR----GVVESLKIITRQASLRVAEYAFHYAKTHGRER 204
V+L+ +RE T G Y G + V++L + TR+ R+ AF A T +++
Sbjct: 148 GVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTL-LYTREEIERIIRKAFELALTR-KKK 205
Query: 205 VSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNL 264
V+++ KAN+++ + L+ + EVA++YP++ E +++DN M L++NP FDV+V N+
Sbjct: 206 VTSVDKANVLESSR-LWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDVIVTENM 264
Query: 265 YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTM 324
+GDI+SD + + G LG+ PS ++ G+ L E VHGSAPDIAGK +ANP A +LS+ M
Sbjct: 265 FGDILSDEASMITGSLGMLPSASLSTDGLGLYEPVHGSAPDIAGKGIANPLATILSAAMM 324
Query: 325 LRH-LELHDKADRIQNAILSTIAEGKYRTADL---GG-----SSTTSDFTKAICDHL 372
LR+ L ++A I+ A+ +AEG YRTAD+ GG + T + A+ D L
Sbjct: 325 LRYSFGLEEEAKAIEKAVEKVLAEG-YRTADIAKPGGKYVSTTEMTDEVKAAVVDEL 380
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/350 (34%), Positives = 185/350 (52%), Gaps = 25/350 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLTWESLE 96
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F + +
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPE-PTRK 59
Query: 97 SVRRNKVGLKGPMATP-IGKGHRSLN-----LTLRKELNLYANVRPCYSL-------PGY 143
V + L G + P + R L L++RK+L+L+AN+RP P
Sbjct: 60 GVEEAEAVLLGSVGGPKWDQNPRELRPEKGLLSIRKQLDLFANLRPVKVFESLSDASPLK 119
Query: 144 KTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRE 203
K D+V+ + +RE T G Y G + + + ++ RVA AF A+ R+
Sbjct: 120 KEYIDNVDFVIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RK 178
Query: 204 RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263
V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V N
Sbjct: 179 HVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGN 237
Query: 264 LYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVT 323
++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 238 IFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAAM 296
Query: 324 MLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
ML H L + A ++++A+ + E DLGGS+ T FT + HL
Sbjct: 297 MLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 184/351 (52%), Gaps = 27/351 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLT----- 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF +A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEFARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSV 322
N++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 237 NIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAA 295
Query: 323 TMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
ML H L + A ++++A+ + E DLGGS+ T FT + HL
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 174 bits (441), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 183/351 (52%), Gaps = 27/351 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLT----- 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSV 322
N++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 237 NIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAA 295
Query: 323 TMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
ML H L + A ++++A+ + E DLGGS+ T FT + HL
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 183/351 (52%), Gaps = 27/351 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLT----- 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSV 322
N++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 237 NIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAA 295
Query: 323 TMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
ML H L + A ++++A+ + E DLGGS+ T FT + HL
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 183/351 (52%), Gaps = 27/351 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLT----- 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEVARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSV 322
N++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 237 NIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAA 295
Query: 323 TMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
ML H L + A ++++A+ + E DLGGS+ T FT + HL
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 184/350 (52%), Gaps = 25/350 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLTWESLE 96
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F + +
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPE-PTRK 59
Query: 97 SVRRNKVGLKGPMATPIGKG-HRSLN-----LTLRKELNLYANVRPCYSLPGYKTRYD-- 148
V + L G + P G R ++ L+LRK +L+AN+RP PG +
Sbjct: 60 GVEEAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLK 119
Query: 149 -----DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRE 203
V+++ +RE T G Y G + + + ++ RVA AF A+ R+
Sbjct: 120 EEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RK 178
Query: 204 RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263
V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V N
Sbjct: 179 HVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGN 237
Query: 264 LYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVT 323
++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 238 IFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAAM 296
Query: 324 MLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
ML H L + A ++++A+ + E DLGGS+ T FT + HL
Sbjct: 297 MLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 183/351 (52%), Gaps = 27/351 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLT----- 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEGARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSV 322
N++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 237 NIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAA 295
Query: 323 TMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
ML H L + A ++++A+ + E DLGGS+ T FT + HL
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 184/350 (52%), Gaps = 25/350 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLTWESLE 96
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F + +
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPE-PTRK 59
Query: 97 SVRRNKVGLKGPMATPIGKG-HRSLN-----LTLRKELNLYANVRPCYSLPGYKTRYD-- 148
V + L G + P G R ++ L+LRK +L+AN+RP PG +
Sbjct: 60 GVEEAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLK 119
Query: 149 -----DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRE 203
V+++ +RE T G Y G + + + ++ RVA AF A+ R+
Sbjct: 120 EEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RK 178
Query: 204 RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263
V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V N
Sbjct: 179 HVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGN 237
Query: 264 LYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVT 323
++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 238 IFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAAM 296
Query: 324 MLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
ML H L + A ++++A+ + E DLGGS+ T FT + HL
Sbjct: 297 MLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/350 (34%), Positives = 184/350 (52%), Gaps = 27/350 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLT----- 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGP-MATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD-- 148
E E+V VG GP T + + L L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWGTGSVRPEQGL-LSLRKSQDLFANLRPAKVFPGLERLSPLK 117
Query: 149 -----DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRE 203
V+++ +RE T G Y G + + + ++ RVA AF A+ R+
Sbjct: 118 EEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RK 176
Query: 204 RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263
V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V N
Sbjct: 177 HVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGN 235
Query: 264 LYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVT 323
++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 236 IFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAAM 294
Query: 324 MLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
ML H L + A ++++A+ + E DLGGS+ T FT + HL
Sbjct: 295 MLEHAFGLVELARKVEDAVAKALLE--TPPPDLGGSAGTEAFTATVLRHL 342
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 181/348 (52%), Gaps = 27/348 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLT----- 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSV 322
N++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 237 NIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAA 295
Query: 323 TMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 369
ML H L + A ++++A+ + E DLGGS+ T FT +
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLE--TPPPDLGGSAGTEAFTATVT 341
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 181/347 (52%), Gaps = 27/347 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLT----- 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSV 322
N++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 237 NIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAA 295
Query: 323 TMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 368
ML H L + A ++++A+ + E DLGGS+ T FT +
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLE--TPPPDLGGSAGTEAFTATV 340
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 181/348 (52%), Gaps = 27/348 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLT----- 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 4 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 63
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 64 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 121
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 122 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-R 180
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 181 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 239
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSV 322
N++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 240 NIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAA 298
Query: 323 TMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 369
ML H L + A ++++A+ + E DLGGS+ T FT +
Sbjct: 299 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVL 344
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 181/347 (52%), Gaps = 27/347 (7%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLT----- 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSV 322
N++GDI+SDL + L G LGL PS ++G G + E VHGSAPDIAGK +ANPTA +LS+
Sbjct: 237 NIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAA 295
Query: 323 TMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 368
ML H L + A ++++A+ + E DLGGS+ T FT +
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATV 340
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 114/355 (32%), Positives = 179/355 (50%), Gaps = 62/355 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K ++ + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPMSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 290
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P NIG+
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 291 GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTI 345
AL EA HG+APDIAG++ ANP +++LS+ MLRH+ + AD I + I
Sbjct: 331 -EYALFEATHGTAPDIAGQDKANPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI 384
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/396 (29%), Positives = 194/396 (48%), Gaps = 78/396 (19%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVG---TEIDPRTQSFLTWESLESV 98
GDGIG ++ +++ V A + + W E + G ++ Q +L E++ ++
Sbjct: 34 GDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQ-YLPDETMAAI 92
Query: 99 RRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITI 155
R KV +KGP+ TP+G G RSLN+ +R++L+LY +RP G + + V+++
Sbjct: 93 REYKVAIKGPLETPVGGGIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIF 152
Query: 156 RENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVAEY 192
REN+E Y+G+E +++R + E + K ++ + S R+
Sbjct: 153 RENSEDIYAGIEWPAGSPEAEKIIRFLREEMGVTKIRFPDSSAIGIKPVSTEGSERLIRR 212
Query: 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY-------------------- 232
YA HG+ VS +HK NIM+ T+G F +AE+
Sbjct: 213 TIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKAAISKAEGK 272
Query: 233 -------------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGG 279
++ ++V+ DN ++ P + V+ NL GD +SD A +GG
Sbjct: 273 AAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGG 332
Query: 280 LGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQN 339
+G+ P N+ + A+ EA HG+APDIAG+ ANP++L+LS+V ML HL + A I
Sbjct: 333 IGMAPGANLSDTH-AIFEATHGTAPDIAGQGKANPSSLILSAVMMLEHLGWGEAAQAIVA 391
Query: 340 AILSTIAEGKYRTADLGG------SSTTSDFTKAIC 369
A+ +TIA G+ T DL + +T++FT A+
Sbjct: 392 AMNATIAAGEV-TGDLAALRGDVPALSTTEFTAALI 426
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 190/356 (53%), Gaps = 34/356 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR 100
+ PGDGIGPE+ ++ +V +T +E +G + L E+L+ RR
Sbjct: 6 AVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRR 65
Query: 101 NKVGLKGPMATPIG-------KGHRSLNLTLRKELNLYANVRPCYSL-------PGYKTR 146
+ L G + P + + L L LRKE+ L+AN+RP + P + R
Sbjct: 66 SDAILLGAVGGPKWDHNPASLRPEKGL-LGLRKEMGLFANLRPVKAYATLLNASPLKRER 124
Query: 147 YDDVNLITIRENTEGEYSGLEHQVVRG-----VVESLKIITRQASLRVAEYAFHYAKTHG 201
++V+L+ +RE T G Y G + RG VV++L TR+ R+ E AF A+
Sbjct: 125 VENVDLVIVRELTGGLYFGRPSER-RGPGENEVVDTLAY-TREEIERIIEKAFQLAQIR- 181
Query: 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVM 261
R++++++ KAN+++ + ++ + E A+KYP++ +++D+ M L+ NP FDV+V
Sbjct: 182 RKKLASVDKANVLESSR-MWREIAEETAKKYPDVELSHMLVDSTAMQLIANPGQFDVIVT 240
Query: 262 PNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSS 321
N++GDI+SDL + + G LG+ PS ++ + E VHGSAPDIAG+ ANP +LS+
Sbjct: 241 ENMFGDILSDLASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSA 300
Query: 322 VTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL----GGSSTTSDFTKAICDHL 372
MLR+ L +A I+ A+ + +G Y T DL G +T + T + + L
Sbjct: 301 ALMLRYSFGLEKEAAAIEKAVDDVLQDG-YCTGDLQVANGKVVSTIELTDRLIEKL 355
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 45 TLFPGDGIGPEIAESVKQVF----RTAEVPVEWEEHYVG-----TEIDPRTQSFLTWE-S 94
+F GDGIGPEI + +QV + A + + E VG DP + L +
Sbjct: 5 AIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMA 64
Query: 95 LESVRRNKVGLKGPM--ATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGY-------KT 145
++V VG GP A P K L LRK L+LYAN+RP P
Sbjct: 65 ADAVILGAVG--GPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPE 122
Query: 146 RYDDVNLITIRENTEGEYSGLEH--QVVRGVVESLKIITRQAS--LRVAEYAFHYAKTHG 201
DV+++ +RE T Y G +V+ G + R+A AF A+
Sbjct: 123 LVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAFRAAQGR- 181
Query: 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVM 261
R+++ ++ KAN+++ T L+ + EVA YP++ + +DN M L++ PA FDVL+
Sbjct: 182 RKQLCSVDKANVLETTR-LWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLT 240
Query: 262 PNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSS 321
N++GDI+SD + L G +G+ PS ++GEG A+ E +HGSAPDIAG++ ANP A +LS
Sbjct: 241 GNMFGDILSDEASQLTGSIGMLPSASLGEGR-AMYEPIHGSAPDIAGQDKANPLATILSV 299
Query: 322 VTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 368
MLRH L A R++ A+ + +G RTAD+ T TKA+
Sbjct: 300 AMMLRHSLNAEPWAQRVEAAVQRVLDQG-LRTADIAAPGTPVIGTKAM 346
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 189/356 (53%), Gaps = 34/356 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR 100
+ PGDGIGPE+ ++ +V +T +E +G + L E+L+ RR
Sbjct: 6 AVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRR 65
Query: 101 NKVGLKGPMATPIG-------KGHRSLNLTLRKELNLYANVRPCYSL-------PGYKTR 146
+ L G + P + + L L LRKE+ L+AN+RP + P + R
Sbjct: 66 SDAILLGAVGGPKWDHNPASLRPEKGL-LGLRKEMGLFANLRPVKAYATLLNASPLKRER 124
Query: 147 YDDVNLITIRENTEGEYSGLEHQVVRG-----VVESLKIITRQASLRVAEYAFHYAKTHG 201
++V+L+ +RE T G Y G + RG VV++L TR+ R+ E AF A+
Sbjct: 125 VENVDLVIVRELTGGLYFGRPSER-RGPGENEVVDTLAY-TREEIERIIEKAFQLAQIR- 181
Query: 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVM 261
R++++++ KAN+++ + ++ + E A+KYP++ +++D+ M L+ NP FDV+V
Sbjct: 182 RKKLASVDKANVLESSR-MWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVT 240
Query: 262 PNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSS 321
N++GDI+SD + + G LG+ PS ++ + E VHGSAPDIAG+ ANP +LS+
Sbjct: 241 ENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSA 300
Query: 322 VTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL----GGSSTTSDFTKAICDHL 372
MLR+ L +A I+ A+ + +G Y T DL G +T + T + + L
Sbjct: 301 ALMLRYSFGLEKEAAAIEKAVDDVLQDG-YCTGDLQVANGKVVSTIELTDRLIEKL 355
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 189/356 (53%), Gaps = 34/356 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR 100
+ PGDGIGPE+ ++ +V +T +E +G + L E+L+ RR
Sbjct: 6 AVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRR 65
Query: 101 NKVGLKGPMATPIG-------KGHRSLNLTLRKELNLYANVRPCYSL-------PGYKTR 146
+ L G + P + + L L LRKE+ L+AN+RP + P + R
Sbjct: 66 SDAILLGAVGGPKWDHNPASLRPEKGL-LGLRKEMGLFANLRPVKAYATLLNASPLKRER 124
Query: 147 YDDVNLITIRENTEGEYSGLEHQVVRG-----VVESLKIITRQASLRVAEYAFHYAKTHG 201
++V+L+ +RE T G Y G + RG VV++L TR+ R+ E AF A+
Sbjct: 125 VENVDLVIVRELTGGLYFGRPSER-RGPGENEVVDTLAY-TREEIERIIEKAFQLAQIR- 181
Query: 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVM 261
R++++++ KAN+++ + ++ + E A+KYP++ +++D+ M L+ NP FDV+V
Sbjct: 182 RKKLASVDKANVLESSR-MWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVT 240
Query: 262 PNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSS 321
N++GDI+SD + + G LG+ PS ++ + E VHGSAPDIAG+ ANP +LS+
Sbjct: 241 ENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSA 300
Query: 322 VTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL----GGSSTTSDFTKAICDHL 372
MLR+ L +A I+ A+ + +G Y T DL G +T + T + + L
Sbjct: 301 ALMLRYSFGLEKEAAAIEKAVDDVLQDG-YCTGDLQVANGKVVSTIELTDRLIEKL 355
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 147/271 (54%), Gaps = 25/271 (9%)
Query: 122 LTLRKELNLYANVRPCYSLPGY-----KTRYDDVNLITIRENTEGEYSGL--------EH 168
L R+E + Y N+RP PG + D++ + +RENTEGEYS L E+
Sbjct: 95 LKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTEN 154
Query: 169 QVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREV 228
++V + ES I TR+ R+ +YAF A+ R+ V++ K+N M + + K +
Sbjct: 155 EIV--IQES--IFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAM 210
Query: 229 AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNI 288
A YP +++++ ID C V P FDV+V NL+GDI+SDL G +G+ PS N+
Sbjct: 211 AAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANL 270
Query: 289 G--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHL----ELHDKA-DRIQNAI 341
+L E VHGSAPDI GKN+ANP A++ S ML L E + +A D + NAI
Sbjct: 271 NPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAI 330
Query: 342 LSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
IA+G T D+GG+ +T AI D L
Sbjct: 331 ERVIADGSV-TPDMGGTLSTQQVGAAISDTL 360
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 186/387 (48%), Gaps = 67/387 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 32 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 88
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 89 LIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 148
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 149 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 208
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 209 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 268
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 290
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P NIG+
Sbjct: 269 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 328
Query: 291 GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI-----LSTI 345
AL EA HG+AP AG++ NP +++LS+ MLRH+ + AD I + T+
Sbjct: 329 -ECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTV 387
Query: 346 AEGKYRTADLGGSSTTSDFTKAICDHL 372
R D S+F AI +++
Sbjct: 388 TYDFERLMDGAKLLKCSEFGDAIIENM 414
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 123/355 (34%), Positives = 176/355 (49%), Gaps = 35/355 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAEVPV--EWEE---HYVGTEID------PRTQSFLTWE 93
+ PGDGIGPE+ +V E +E+ H G ID P + E
Sbjct: 16 AVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLE 75
Query: 94 SLESVRRNKVGLKGPMATPIGKGHRSLN---LTLRKELNLYANVRPC--------YSLPG 142
+ +++ VG GP + R L LRK LNLYAN+RP S
Sbjct: 76 A-DAIFLGSVG--GPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLK 132
Query: 143 YKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
K V+L+T+RE + G Y G + I R+ R+A AF AK R
Sbjct: 133 EKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIYDRKTVERIARTAFEIAKNR-R 191
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
++V+++ KAN++ + L+ K EVA +YP++ + +DN M L+ P+ FDV++
Sbjct: 192 KKVTSVDKANVLYSS-MLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVILTT 250
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSV 322
N++GDI+SD A L G LGL PS + G+ L E GSAPDIAGKN+ANP A +LS
Sbjct: 251 NMFGDILSDESAALPGSLGLLPSASFGDKN--LYEPAGGSAPDIAGKNIANPIAQILSLA 308
Query: 323 TMLRH-LELHDKADRIQNAILSTIAEGKYRTADLG----GSSTTSDFTKAICDHL 372
ML H + ++A +I+ A+ I EG YRT D+ + +TS IC L
Sbjct: 309 MMLEHSFGMVEEARKIERAVELVIEEG-YRTRDIAEDPEKAVSTSQMGDLICKKL 362
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 186/387 (48%), Gaps = 67/387 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 290
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P NIG+
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 291 GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI-----LSTI 345
AL EA HG+AP AG++ NP +++LS+ MLRH+ + AD I + T+
Sbjct: 331 -ECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTV 389
Query: 346 AEGKYRTADLGGSSTTSDFTKAICDHL 372
R D S+F AI +++
Sbjct: 390 TYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 186/387 (48%), Gaps = 67/387 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 290
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P NIG+
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 291 GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI-----LSTI 345
AL EA HG+AP AG++ NP +++LS+ MLRH+ + AD I + T+
Sbjct: 331 -ECALFEATHGTAPAYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTV 389
Query: 346 AEGKYRTADLGGSSTTSDFTKAICDHL 372
R D S+F AI +++
Sbjct: 390 TYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 111/382 (29%), Positives = 186/382 (48%), Gaps = 59/382 (15%)
Query: 23 PNPNLALPIARAFSSDIT--PITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEW 73
P + + + FS +++ PI + GDG G +I + +V A + + W
Sbjct: 17 PEGGDKITVNKDFSLNVSDQPIIPYI-EGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHW 75
Query: 74 EEHYVGTEIDP--RTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLY 131
E Y G + +L E+L+ ++ V +KGP+ TP+G G RSLN+ LR+EL+LY
Sbjct: 76 MEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTTPVGGGIRSLNVALRQELDLY 135
Query: 132 ANVRPCYSLPGYKT---RYDDVNLITIRENTEGEYSGLE--------HQVVRGVVESL-- 178
+RP G + + N++ REN+E Y+G+E +V++ + E +
Sbjct: 136 VCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFLQEEMGV 195
Query: 179 -------------KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCC 225
K ++++ + R+ A YA + R+ V+ +HK NIM+ T+G F
Sbjct: 196 KKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAG 255
Query: 226 REVAEKY--------------------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLY 265
+A+K EI ++ + D ++ PA +DV+ NL
Sbjct: 256 YALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLN 315
Query: 266 GDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML 325
GD ISD A +GG+G+ P N+ + +A+ EA HG+AP AGK+ NP + +LS+ ML
Sbjct: 316 GDYISDALAAQVGGIGIAPGANLSD-SVAMFEATHGTAPKYAGKDYVNPGSEILSAEMML 374
Query: 326 RHLELHDKADRIQNAILSTIAE 347
RHL + AD I +A+ +I +
Sbjct: 375 RHLGWTEAADVIISAMEKSIKQ 396
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 186/387 (48%), Gaps = 67/387 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E ++G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIFAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 290
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P NIG+
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 291 GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI-----LSTI 345
AL EA HG+AP AG++ NP +++LS+ MLRH+ + AD I + T+
Sbjct: 331 -ECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTV 389
Query: 346 AEGKYRTADLGGSSTTSDFTKAICDHL 372
R D S+F AI +++
Sbjct: 390 TYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 185/387 (47%), Gaps = 67/387 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G R LN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRDLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 290
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P NIG+
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 291 GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI-----LSTI 345
AL EA HG+AP AG++ NP +++LS+ MLRH+ + AD I + T+
Sbjct: 331 -ECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTV 389
Query: 346 AEGKYRTADLGGSSTTSDFTKAICDHL 372
R D S+F AI +++
Sbjct: 390 TYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 185/387 (47%), Gaps = 67/387 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G R LN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRELNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 290
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P NIG+
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 291 GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI-----LSTI 345
AL EA HG+AP AG++ NP +++LS+ MLRH+ + AD I + T+
Sbjct: 331 -ECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTV 389
Query: 346 AEGKYRTADLGGSSTTSDFTKAICDHL 372
R D S+F AI +++
Sbjct: 390 TYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 158 bits (399), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 185/387 (47%), Gaps = 67/387 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G R LN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRXLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 290
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P NIG+
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 291 GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI-----LSTI 345
AL EA HG+AP AG++ NP +++LS+ MLRH+ + AD I + T+
Sbjct: 331 -ECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTV 389
Query: 346 AEGKYRTADLGGSSTTSDFTKAICDHL 372
R D S+F AI +++
Sbjct: 390 TYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 185/387 (47%), Gaps = 67/387 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +H NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHMGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 290
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P NIG+
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 291 GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI-----LSTI 345
AL EA HG+AP AG++ NP +++LS+ MLRH+ + AD I + T+
Sbjct: 331 -ECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTV 389
Query: 346 AEGKYRTADLGGSSTTSDFTKAICDHL 372
R D S+F AI +++
Sbjct: 390 TYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 185/387 (47%), Gaps = 67/387 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V + GP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIMGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 290
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P NIG+
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 291 GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI-----LSTI 345
AL EA HG+AP AG++ NP +++LS+ MLRH+ + AD I + T+
Sbjct: 331 -ECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTV 389
Query: 346 AEGKYRTADLGGSSTTSDFTKAICDHL 372
R D S+F AI +++
Sbjct: 390 TYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 176/346 (50%), Gaps = 31/346 (8%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAEVPVEWE---EHYV--GTEIDPRTQSFLTWESLESVR 99
+ PGDGIGPE+ +V + HY G ID L ++E
Sbjct: 8 AVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHP-LPKATVEGCE 66
Query: 100 RNKVGLKGPMATPI-------GKGHRSLNLTLRKELNLYANVRPCYSLPGYKT----RYD 148
+ L G + P + R L LRK L++N+RP G + R D
Sbjct: 67 QADAILFGSVGGPKWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRAD 126
Query: 149 ----DVNLITIRENTEGEYSGL-EHQVVRGVVE---SLKIITRQASLRVAEYAFHYAKTH 200
+++ +RE T G Y G + + G E ++ R R+A AF A+
Sbjct: 127 IAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESARKR 186
Query: 201 GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLV 260
R +V++I KAN++Q + L+ + +VA+ YP++ + IDN M L+K+P+ FDVL+
Sbjct: 187 -RRKVTSIDKANVLQSSI-LWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLL 244
Query: 261 MPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLS 320
NL+GDI+SD CA + G +G+ PS ++ E G L E GSAPDIAGKN+ANP A +LS
Sbjct: 245 CSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILS 304
Query: 321 SVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 363
+LR+ L+ +D A I+ AI + EG RT DL G ++ ++D
Sbjct: 305 LALLLRYSLDANDAATAIEQAINRALEEG-VRTGDLARGAAAVSTD 349
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 185/387 (47%), Gaps = 67/387 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSL + LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRSLLVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPDHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 290
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P NIG+
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 291 GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI-----LSTI 345
AL EA HG+AP AG++ NP +++LS+ MLRH+ + AD I + T+
Sbjct: 331 -ECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTV 389
Query: 346 AEGKYRTADLGGSSTTSDFTKAICDHL 372
R D S+F AI +++
Sbjct: 390 TYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 174/345 (50%), Gaps = 29/345 (8%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAEVPVEWE---EHYV--GTEIDPRTQSF--LTWESLES 97
+ PGDGIGPE+ +V HY G ID Q T E E
Sbjct: 8 AVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCEQ 67
Query: 98 VRRNKVG-LKGPMAT---PIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT----RYD- 148
G + GP P + R L LRK L++N+RP G + R D
Sbjct: 68 ADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADI 127
Query: 149 ---DVNLITIRENTEGEYSGL-EHQVVRGVVE---SLKIITRQASLRVAEYAFHYAKTHG 201
+++ +RE T G Y G + + G E ++ R R+A AF A+
Sbjct: 128 AANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESARKR- 186
Query: 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVM 261
R +V++I KAN++Q + L+ + E+A +YP++ + IDN M L+K+P+ FDVL+
Sbjct: 187 RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLC 245
Query: 262 PNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSS 321
NL+GDI+SD CA + G +G+ PS ++ E G L E GSAPDIAGKN+ANP A +LS
Sbjct: 246 SNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSL 305
Query: 322 VTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 363
+LR+ L+ D A I+ AI + EG RT DL G ++ ++D
Sbjct: 306 ALLLRYSLDADDAACAIERAINRALEEG-IRTGDLARGAAAVSTD 349
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 184/387 (47%), Gaps = 67/387 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G R L + LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRELLVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPDHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 290
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P NIG+
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD 330
Query: 291 GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI-----LSTI 345
AL EA HG+AP AG++ NP +++LS+ MLRH+ + AD I + T+
Sbjct: 331 -ECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTV 389
Query: 346 AEGKYRTADLGGSSTTSDFTKAICDHL 372
R D S+F AI +++
Sbjct: 390 TYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|B Chain B, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|C Chain C, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|D Chain D, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
Length = 364
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 141/271 (52%), Gaps = 25/271 (9%)
Query: 122 LTLRKELNLYANVRPCYSLPGY-----KTRYDDVNLITIRENTEGEYSGL--------EH 168
L R+E + Y N+RP PG + D++ + +RENTEGEYS L E+
Sbjct: 95 LKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIXFENTEN 154
Query: 169 QVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREV 228
++V + ES I TR+ R+ +YAF A+ R+ V++ K+N + + K
Sbjct: 155 EIV--IQES--IFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGXAISXPYWDKRTEAX 210
Query: 229 AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNI 288
A YP +++++ ID C V P FDV+V NL+GDI+SDL G +G+ PS N+
Sbjct: 211 AAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANL 270
Query: 289 G--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHL----ELHDKA-DRIQNAI 341
+L E VHGSAPDI GKN+ANP A + S L L E + +A D NAI
Sbjct: 271 NPERNFPSLFEPVHGSAPDIFGKNIANPIAXIWSGALXLEFLGQGDERYQRAHDDXLNAI 330
Query: 342 LSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372
IA+G T D GG+ +T AI D L
Sbjct: 331 ERVIADGSV-TPDXGGTLSTQQVGAAISDTL 360
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 172/328 (52%), Gaps = 20/328 (6%)
Query: 46 LFPGDGIGPEI-AESVKQVFRTAEVP-VEWEEHYVGTEIDPRTQSFLTWESLESVRRNK- 102
+ GDGIGPE+ AE+VK + A VP V+ + +G T L + +R +
Sbjct: 6 IIAGDGIGPEVTAEAVKVL--DAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDA 63
Query: 103 --VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLITIRE 157
+G G + P G R L L LR EL+ + N+RP PG + ++ + +RE
Sbjct: 64 ILLGAIGDPSVPSGVLERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVRE 123
Query: 158 NTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANI 213
TEG Y+G + G V + + T RV AF A+ R+ ++ +HK N+
Sbjct: 124 GTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVADAFERARRR-RKHLTLVHKTNV 182
Query: 214 MQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLC 273
+ GL+L+ EV E YP++ +D + ++ +P FDV+V NL+GDII+DL
Sbjct: 183 LTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLA 242
Query: 274 AGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELH 331
A + GG+GL S NI ++ E VHGSAPDIAG+ +A+PTA ++S +L HL H
Sbjct: 243 AAVCGGIGLAASGNIDATRANPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLSHLGEH 302
Query: 332 DKADRIQNAI---LSTIAEGKYRTADLG 356
D A R+ A+ L+T + T+D+G
Sbjct: 303 DAAARVDRAVEAHLATRGSERLATSDVG 330
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 182/345 (52%), Gaps = 33/345 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVG-TEID----PRTQSFLT-WES 94
+ GDGIGPE+ ++V E + +E+ E+ VG ID P ++ L E+
Sbjct: 17 AVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEA 76
Query: 95 LESVRRNKVGLKGPMAT---PIGKGHRSLNLTLRKELNLYANVRPCYSLPGYK----TRY 147
++V VG GP P + R L LR L+ N+RP PG + R
Sbjct: 77 ADAVLFGSVG--GPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRS 134
Query: 148 D----DVNLITIRENTEGEYSGLEHQVVRGVVESLKII-----TRQASLRVAEYAFHYAK 198
D +++ +RE T G Y G + + +G E+ + +R+ R+A+ AF A+
Sbjct: 135 DISEKGFDILCVRELTGGIYFG-KPKGRQGEGENEEAFDTMRYSRKEIRRIAKIAFESAQ 193
Query: 199 THGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDV 258
R++V+++ KAN++ L+ + EVA+ YP++ E + IDN M L++ P FDV
Sbjct: 194 GR-RKKVTSVDKANVL-ACSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFDV 251
Query: 259 LVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALL 318
++ NL+GDI+SD A L G +GL S ++ G + E GSAPDIAG+ +ANP A +
Sbjct: 252 MLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAGGSAPDIAGQGIANPVAQI 311
Query: 319 LSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTS 362
LS+ +LRH L+L D A I+ A+ +++G Y T +L +S S
Sbjct: 312 LSAALLLRHSLKLEDAALAIEAAVSKALSDG-YLTCELLPASERS 355
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 174/346 (50%), Gaps = 36/346 (10%)
Query: 43 TATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVGTEIDPRTQSFLTWESLESV 98
T TL PGDGIGPE+ K V + A V + E +G L E++ +
Sbjct: 44 TITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAA 103
Query: 99 RRNKVGLKGPMATPIGKGHRSLN-----------LTLRKELNLYANVRPCYSLPGY---- 143
+ + L G + G++ N L +R L ++AN+RP LP
Sbjct: 104 KESDAVLLGAIG-----GYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDAS 158
Query: 144 ---KTRYDDVNLITIRENTEGEYSGLEHQVVRG-----VVESLKIITRQASLRVAEYAFH 195
+ + V+L+ +RE T G Y G + V + ++ R+A AF
Sbjct: 159 TLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFE 218
Query: 196 YAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAA 255
A+ R ++ ++ KAN+++ + L+ K +A +YP++ + +DN M LV++P
Sbjct: 219 TARKR-RGKLCSVDKANVLEASI-LWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQ 276
Query: 256 FDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPT 315
FD +V N++GDI+SD + + G +G+ PS ++ + G L E +HGSAPDIAG++ ANP
Sbjct: 277 FDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQDKANPL 336
Query: 316 ALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST 360
A +LS+ +L++ L A RI++A+L + G +RT D+ + T
Sbjct: 337 ATILSAAMLLKYGLGEEKAAKRIEDAVLVALNNG-FRTGDIYSAGT 381
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 178/338 (52%), Gaps = 33/338 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVG-TEID----PRTQSFLTW-ES 94
+ GDGIGPE+ ++V + E + +E+ E+ VG ID P ++ L E+
Sbjct: 17 AVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCEA 76
Query: 95 LESVRRNKVGLKGPMAT---PIGKGHRSLNLTLRKELNLYANVRPCYSLPGYK----TRY 147
++V VG GP P + R L LR L+ N+RP PG + R
Sbjct: 77 ADAVLFGSVG--GPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRS 134
Query: 148 D----DVNLITIRENTEGEYSGLEHQVVRGVVESLKII-----TRQASLRVAEYAFHYAK 198
D +++ +RE T G Y G + + +G E+ + +R+ R+A+ AF A+
Sbjct: 135 DISEKGFDILCVRELTGGIYFG-KPKGRQGEGENEEAFDTMRYSRKEIRRIAKIAFESAQ 193
Query: 199 THGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDV 258
R++V+++ KAN++ L+ + EVA+ YP++ E + IDN M L++ P FDV
Sbjct: 194 GR-RKKVTSVDKANVL-ACSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFDV 251
Query: 259 LVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALL 318
++ NL+GDI+SD A L G +GL S ++ G + E GSAPDIAG+ +ANP A +
Sbjct: 252 MLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAGGSAPDIAGQGIANPVAQI 311
Query: 319 LSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 355
LS+ +LRH L+L D A I+ A+ + G Y T +L
Sbjct: 312 LSAALLLRHSLKLEDAALAIEAAVSKALNSG-YLTGEL 348
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/338 (33%), Positives = 174/338 (51%), Gaps = 33/338 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVG-TEID----PRTQSFLTW-ES 94
+ GDGIGPE+ ++V + E + +E+ E+ VG ID P ++ L E+
Sbjct: 17 AVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCEA 76
Query: 95 LESVRRNKVGLKGPMAT---PIGKGHRSLNLTLRKELNLYANVRPCYSLPGYK----TRY 147
+++ VG GP P + R L LR L+ N+RP G + R
Sbjct: 77 ADAILFGSVG--GPKWEKLPPNEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRS 134
Query: 148 D----DVNLITIRENTEGEYSGLEHQVVRGVVESLKII-----TRQASLRVAEYAFHYAK 198
D +++ +RE T G Y G + + +G ES + +R+ R+A AF A+
Sbjct: 135 DISARGFDVLCVRELTGGIYFG-KPKGRQGEGESEEAFDTMRYSRREISRIARIAFEAAR 193
Query: 199 THGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDV 258
R++V+++ KAN++ L+ + EVA +P++ E + IDN M L++ P FDV
Sbjct: 194 GR-RKKVTSVDKANVL-ACSVLWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDV 251
Query: 259 LVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALL 318
++ NL+GDI+SD A L G +GL S ++ G L E GSAPDIAGK +ANP A +
Sbjct: 252 MLCSNLFGDILSDEIAMLTGSMGLLSSASMNSTGFGLFEPAGGSAPDIAGKGIANPIAQI 311
Query: 319 LSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 355
LS+ MLRH L+ + A I+ A+ + G Y T +L
Sbjct: 312 LSAALMLRHSLKQEEAASAIERAVTKALNSG-YLTGEL 348
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 165/349 (47%), Gaps = 26/349 (7%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVG 104
+ PGDGIGPEI +V + E E VG + L +L +
Sbjct: 12 AVLPGDGIGPEIVNEAVKVLNALDEKFELEHAPVGGAGYEASGHPLPDATLALAKEADAI 71
Query: 105 LKGPMAT-PIGKGHRSLN-----LTLRKELNLYANVRP--CY-----SLPGYKTRYDDVN 151
L G + R+L L LRK L L+AN RP CY + P ++
Sbjct: 72 LFGAVGDWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPELVAGLD 131
Query: 152 LITIRENTEGEYSGLEHQV-------VRGVVESLKII--TRQASLRVAEYAFHYAKTHGR 202
++ +RE Y G V G E + + R+A AF A+ +
Sbjct: 132 ILIVRELNGDIYFGQPRGVRAAPDGPFAGEREGFDTMRYSEPEVRRIAHVAFQAAQKRAK 191
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ +S + K+N+++ T + +V+++Y ++ + +DN M L K P FDV+V
Sbjct: 192 KLLS-VDKSNVLE-TSQFWRDVMIDVSKEYADVELSHMYVDNAAMQLAKAPKQFDVIVTG 249
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSV 322
N++GDI+SD + L G +G+ PS ++ + L E HGSAPDIAGK +ANP A +LS+
Sbjct: 250 NMFGDILSDEASMLTGSIGMLPSASLDKNNKGLYEPSHGSAPDIAGKGIANPLATILSAA 309
Query: 323 TMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 370
+LR+ L ++ADRI+ A+ T+ E YRT D+ T A+ D
Sbjct: 310 MLLRYSLNRAEQADRIERAV-KTVLEQGYRTGDIATPGCRQVGTAAMGD 357
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 172/336 (51%), Gaps = 26/336 (7%)
Query: 45 TLFPGDGIGPEIAESVKQVF----RTAEVPVEWEEHYVG-TEIDPRTQSFLTWESLESVR 99
+ GDGIGP + + ++ + E E +G ID + L+ E+L+
Sbjct: 10 AVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVA-LSDETLKLCE 68
Query: 100 RNKVGLKGPMATPIGKG-------HRSLNLTLRKELNLYANVRPC--YSLPGYKTRYDD- 149
++ L G + P R+ L LRK NL+AN+RPC Y + + +
Sbjct: 69 QSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLKNE 128
Query: 150 -----VNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRER 204
V+++ +RE T G Y G + + + +I T++ R+A AF A+ +++
Sbjct: 129 IIQKGVDILCVRELTGGIYFG-KQDLGKESAYDTEIYTKKEIERIARIAFESARIR-KKK 186
Query: 205 VSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNL 264
V I KAN++ + L+ + VA+ Y +I E + +DN M +VKNP+ FDV++ NL
Sbjct: 187 VHLIDKANVLASSI-LWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDVMLCSNL 245
Query: 265 YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTM 324
+GDI+SD A + G LGL S ++ + G L E GSAPDIA N+ANP A +LS+ M
Sbjct: 246 FGDILSDELAAINGSLGLLSSASLNDKGFGLYEPAGGSAPDIAHLNIANPIAQILSAALM 305
Query: 325 LRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS 359
L++ + A I+NAI +A+GK T DL S
Sbjct: 306 LKYSFKEEQAAQDIENAISLALAQGK-MTKDLNAKS 340
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 169/336 (50%), Gaps = 26/336 (7%)
Query: 45 TLFPGDGIGPEIAESVKQVF----RTAEVPVEWEEHYVG-TEIDPRTQSFLTWESLESVR 99
+ GDGIGP + + ++ + E E +G ID + L+ E+L+
Sbjct: 10 AVLAGDGIGPLVXKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVA-LSDETLKLCE 68
Query: 100 RNKVGLKGPMATPI-------GKGHRSLNLTLRKELNLYANVRPC--YSLPGYKTRYDD- 149
++ L G + P + R+ L LRK NL+AN+RPC Y + + +
Sbjct: 69 QSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLKNE 128
Query: 150 -----VNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRER 204
V+++ +RE T G Y G + + + +I T++ R+A AF A+ +++
Sbjct: 129 IIQKGVDILCVRELTGGIYFG-KQDLGKESAYDTEIYTKKEIERIARIAFESARIR-KKK 186
Query: 205 VSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNL 264
V I KAN++ + L+ + VA+ Y +I E +DN +VKNP+ FDV + NL
Sbjct: 187 VHLIDKANVLASSI-LWREVVANVAKDYQDINLEYXYVDNAAXQIVKNPSIFDVXLCSNL 245
Query: 265 YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTM 324
+GDI+SD A + G LGL S ++ + G L E GSAPDIA N+ANP A +LS+
Sbjct: 246 FGDILSDELAAINGSLGLLSSASLNDKGFGLYEPAGGSAPDIAHLNIANPIAQILSAALX 305
Query: 325 LRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS 359
L++ + A I+NAI +A+GK T DL S
Sbjct: 306 LKYSFKEEQAAQDIENAISLALAQGK-XTKDLNAKS 340
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 210 KANIMQKTDGLFLKCCREVAE-----KYPE--ITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
K I++K DG F +EV E K+ + I YE +ID+ ++K+ F ++ +
Sbjct: 228 KNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLIDDMVAQMIKSKGGF-IMALK 286
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIAL-AEAVHGS 302
N GD+ SD+ A G LGL S + G +EA HG+
Sbjct: 287 NYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGT 327
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 30/191 (15%)
Query: 210 KANIMQKTDGLFLKCCREVAEKYPE-------ITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
K I++ DG+F V E+ + +TYE +ID+ +K + V
Sbjct: 215 KNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLTYEHRLIDDMVAACLKWEGGY-VWACK 273
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNI-GEGGIALAEAVHGSAPD-----IAGKNLA-NPT 315
N GD+ SD A G LGL S + +G AEA HG+ AGK + NP
Sbjct: 274 NYDGDVQSDTVAQGYGSLGLMTSVLMTADGKTVEAEAAHGTVTRHYRQYQAGKPTSTNPI 333
Query: 316 ALLLSSVTMLRHL-------ELHDKADRIQNAILSTIAEGKYRTADLG-------GSSTT 361
A + + L+H E+ D A ++++ +++T+ GK T DL +
Sbjct: 334 ASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGK-MTKDLAILIGPEQDWLNS 392
Query: 362 SDFTKAICDHL 372
+F AI D+L
Sbjct: 393 EEFLDAIADNL 403
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 235 ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIA 294
+ Y ++ID+ ++++ M N GDI+SD+ A G LGL S + G+
Sbjct: 239 VNYRYMLIDDAAAQILRSEGGMLWACM-NYEGDIMSDMIASGFGSLGLMTSVLVSPDGVY 297
Query: 295 LAEAVHGSAPD-----IAG-KNLANPTALLLSSVTMLRHL-------ELHDKADRIQNAI 341
EA HG+ + G K NPTA + + +R E+ + AD+++ A+
Sbjct: 298 EFEAAHGTVRRHYYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAV 357
Query: 342 LSTIAEG 348
++TI G
Sbjct: 358 INTIESG 364
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 210 KANIMQKTDGLFLKCCREVAEKYPE-------ITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
K I++ DG F +E+ EK+ + I YE +ID+ ++K+ F V
Sbjct: 212 KNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKSSGGF-VWACK 270
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIAL-AEAVHGS 302
N GD+ SD+ A G LGL S + G + AEA HG+
Sbjct: 271 NYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 311
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 30/187 (16%)
Query: 210 KANIMQKTDGLFLKCCREVAE-KYPE------ITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
K I + D F +E+ E +Y E + Y +ID+ ++++ V
Sbjct: 210 KDTISKTYDHRFKDIFQEIYENEYKEKFEAKNLQYFYTLIDDAVARIIRSEGGM-VWACK 268
Query: 263 NLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNL------ANPTA 316
N GD++SD+ A G L + S + G EA HG+ K+L N A
Sbjct: 269 NYDGDVMSDMVASAFGSLAMMTSVLVSPDGKYEFEAAHGTVTRHYYKHLKGEETSTNSMA 328
Query: 317 LLLSSVTMLRHL-------ELHDKADRIQNAILSTIAEGKYRTADLGGSS--------TT 361
+ + L+ EL D A +++ A + TI G T DL S T
Sbjct: 329 TIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENG-VMTKDLASLSEVPEKKIVNT 387
Query: 362 SDFTKAI 368
DF K I
Sbjct: 388 EDFLKEI 394
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 33/170 (19%)
Query: 210 KANIMQKTDGLFLKCCREVAE-------KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
K I++ DG F ++V + K ++ YE +ID+ +K + V
Sbjct: 233 KNTILKAYDGRFKDIFQKVFDEEFAAQFKAEKLWYEHRLIDDXVASALKWSGGY-VWACK 291
Query: 263 NLYGDIISDLCAGLIGGLGLTPSC-NIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSS 321
N GD+ SD+ A G LGL S +G AEA HG
Sbjct: 292 NYDGDVQSDIVAQGFGSLGLXTSVLXTPDGKTVEAEAAHG-------------------- 331
Query: 322 VTMLRHLELHDKADRIQ-NAILSTIA--EGKYRTADLGGSSTTSDFTKAI 368
T+ RH H K + N+I S A G A L G++ + F++ +
Sbjct: 332 -TVTRHYRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETL 380
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 119/306 (38%), Gaps = 61/306 (19%)
Query: 75 EHY-VGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATP---------IGKGHRSLNLTL 124
E+Y +G E RT +T ++ E++++ VG+K TP + + +S N T+
Sbjct: 39 EYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPNATV 98
Query: 125 RKELN--------LYANVRPC---YSLP------GYKTRYDDVNL-----------ITIR 156
R L+ + N++P + P Y Y + + +T +
Sbjct: 99 RAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDK 158
Query: 157 ENTEGEYSGLEHQ---VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANI 213
E + +E +V+G+ ++ I A F Y+ + A K I
Sbjct: 159 NGKETRQTIMEVDEPAIVQGIHNTVASIGH-----FARACFEYSLDQKIDCWFAT-KDTI 212
Query: 214 MQKTDGLFLKCCREV-AEKYPE------ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYG 266
++ D F E+ A++Y E I Y +ID+ ++K + N G
Sbjct: 213 SKQYDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLIDDVVARMMKTEGGM-LWACKNYDG 271
Query: 267 DIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNL------ANPTALLLS 320
D++SD+ A G L + S + G EA HG+ ++L NP AL+ +
Sbjct: 272 DVMSDMVASAFGSLAMMSSVLVSPYGYFEYEAAHGTVQRHYYQHLKGERTSTNPVALIYA 331
Query: 321 SVTMLR 326
LR
Sbjct: 332 WTGALR 337
>pdb|1ZB6|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Gspp And 1,6-Dihydroxynaphtalene
pdb|1ZCW|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Gpp
pdb|1ZDW|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Gspp And Flaviolin
pdb|1ZDY|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Taps
Length = 307
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 177 SLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIT 236
S+ RQ +L +E + A+T E V A+ + + + L LK C+ YP +
Sbjct: 164 SMDYKKRQVNLYFSELS---AQTLEAESVLALVRELGLHVPNELGLKFCKRSFSVYPTLN 220
Query: 237 YEEVVIDNCCMMLVKN 252
+E ID C ++ N
Sbjct: 221 WETGKIDRLCFAVISN 236
>pdb|1SAC|A Chain A, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1SAC|B Chain B, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1SAC|C Chain C, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1SAC|D Chain D, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1SAC|E Chain E, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1LGN|A Chain A, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1LGN|B Chain B, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1LGN|C Chain C, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1LGN|D Chain D, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1LGN|E Chain E, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1GYK|A Chain A, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|1GYK|B Chain B, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|1GYK|C Chain C, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|1GYK|D Chain D, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|1GYK|E Chain E, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|2A3W|A Chain A, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|B Chain B, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|C Chain C, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|D Chain D, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|E Chain E, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|F Chain F, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|G Chain G, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|H Chain H, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|I Chain I, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|J Chain J, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|K Chain K, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|L Chain L, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|M Chain M, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|N Chain N, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|O Chain O, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|P Chain P, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|Q Chain Q, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|R Chain R, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|S Chain S, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|T Chain T, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3X|A Chain A, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|B Chain B, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|C Chain C, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|D Chain D, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|E Chain E, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|F Chain F, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|G Chain G, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|H Chain H, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|I Chain I, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|J Chain J, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3Y|A Chain A, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|2A3Y|B Chain B, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|2A3Y|C Chain C, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|2A3Y|D Chain D, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|2A3Y|E Chain E, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|3D5O|A Chain A, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|3D5O|B Chain B, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|3D5O|C Chain C, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|3D5O|D Chain D, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|3D5O|E Chain E, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|2W08|A Chain A, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|2W08|B Chain B, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|2W08|C Chain C, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|2W08|D Chain D, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|2W08|E Chain E, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|3KQR|A Chain A, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
pdb|3KQR|B Chain B, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
pdb|3KQR|C Chain C, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
pdb|3KQR|D Chain D, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
pdb|3KQR|E Chain E, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
Length = 204
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 109 MATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGL-- 166
+ TP+ K ++ L R Y+++ YSL Y T+ D L+ +E GEYS
Sbjct: 22 LITPLEKPLQNFTLCFRA----YSDLSRAYSLFSYNTQGRDNELLVYKERV-GEYSLYIG 76
Query: 167 EHQVVRGVVESLK-----IITRQASLRVAEY 192
H+V V+E ++ ++S +AE+
Sbjct: 77 RHKVTSKVIEKFPAPVHICVSWESSSGIAEF 107
>pdb|3EJ6|A Chain A, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|B Chain B, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|C Chain C, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|D Chain D, Neurospora Crassa Catalase-3 Crystal Structure
Length = 688
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 153 ITIRENTEGEYSGLEHQVVRGVVESLKII 181
I + E G Y+G + +V++GV E LK+
Sbjct: 646 IGVEEKEAGVYAGAQDEVIKGVEEGLKVF 674
>pdb|3QED|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QED|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QED|C Chain C, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QED|D Chain D, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 314
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 48 PGDGIGPEIAESVKQVFR------------TAEVPVEWEEHYVGTEIDPRTQSFLTWES- 94
PG IG + +S F+ T + P++W++ ID Q++L W +
Sbjct: 107 PGFAIGVAVGDSPIGPFKDALGKALITNDXTTDTPIDWDDIDPSVFIDDDGQAYLFWGNT 166
Query: 95 ---LESVRRNKVGLKGPM 109
+++N V L GP+
Sbjct: 167 RPRYAKLKKNXVELDGPI 184
>pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From
Aerococcus Viridans
pdb|2DJI|A Chain A, Crystal Structure Of Pyruvate Oxidase From Aerococcus
Viridans Containing Fad
Length = 590
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 123 TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVR 172
TL+ + LY+ + YK RY+ NL+ RE E E GLE + ++
Sbjct: 547 TLKLDSKLYSEDE----IKAYKERYEAANLVPFREYLEAE--GLESKYIK 590
>pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad
And Tpp, From Aerococcus Viridans
pdb|1V5G|A Chain A, Crystal Structure Of The Reaction Intermediate Between
Pyruvate Oxidase Containing Fad And Tpp, And Substrate
Pyruvate
Length = 589
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 123 TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVR 172
TL+ + LY+ + YK RY+ NL+ RE E E GLE + ++
Sbjct: 546 TLKLDSKLYSEDE----IKAYKERYEAANLVPFREYLEAE--GLESKYIK 589
>pdb|3QEF|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QEF|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 307
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 48 PGDGIGPEIAESVKQVFR------------TAEVPVEWEEHYVGTEIDPRTQSFLTWES- 94
PG IG + +S F+ T + P++W++ ID Q++L W +
Sbjct: 100 PGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQAYLFWGNT 159
Query: 95 ---LESVRRNKVGLKGPM 109
+++N V L GP+
Sbjct: 160 RPRYAKLKKNMVELDGPI 177
>pdb|3QEE|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QEE|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 307
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 48 PGDGIGPEIAESVKQVFR------------TAEVPVEWEEHYVGTEIDPRTQSFLTWES- 94
PG IG + +S F+ T + P++W++ ID Q++L W +
Sbjct: 100 PGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQAYLFWGNT 159
Query: 95 ---LESVRRNKVGLKGPM 109
+++N V L GP+
Sbjct: 160 RPRYAKLKKNMVELDGPI 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,796,743
Number of Sequences: 62578
Number of extensions: 438642
Number of successful extensions: 1237
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 86
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)