Query 017413
Match_columns 372
No_of_seqs 137 out of 1285
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00118 isocitrate dehydrogen 100.0 1E-121 3E-126 909.2 39.6 371 1-372 1-372 (372)
2 COG0473 LeuB Isocitrate/isopro 100.0 6E-120 1E-124 878.9 33.4 333 39-372 1-345 (348)
3 PRK08997 isocitrate dehydrogen 100.0 7E-117 1E-121 867.1 37.5 331 41-372 2-334 (334)
4 PRK14025 multifunctional 3-iso 100.0 5E-115 1E-119 852.6 36.4 325 42-372 2-330 (330)
5 PLN00123 isocitrate dehydrogen 100.0 3E-114 6E-119 853.0 39.6 331 36-372 25-359 (360)
6 KOG0785 Isocitrate dehydrogena 100.0 6E-115 1E-119 826.0 27.9 340 32-372 26-365 (365)
7 PRK08194 tartrate dehydrogenas 100.0 1E-113 3E-118 849.5 35.4 330 40-372 2-349 (352)
8 TIGR00175 mito_nad_idh isocitr 100.0 8E-113 2E-117 840.2 38.1 331 39-372 1-333 (333)
9 TIGR02089 TTC tartrate dehydro 100.0 4E-113 8E-118 847.1 35.3 331 39-372 1-352 (352)
10 PRK09222 isocitrate dehydrogen 100.0 2E-112 4E-117 864.7 36.9 331 40-372 3-341 (482)
11 TIGR02924 ICDH_alpha isocitrat 100.0 5E-112 1E-116 858.5 35.2 328 43-372 2-337 (473)
12 PRK03437 3-isopropylmalate deh 100.0 8E-112 2E-116 834.6 35.7 326 40-372 3-344 (344)
13 PLN02329 3-isopropylmalate deh 100.0 7E-111 2E-115 839.5 35.0 329 40-372 45-401 (409)
14 TIGR00169 leuB 3-isopropylmala 100.0 3E-110 7E-115 825.1 35.5 326 43-372 1-349 (349)
15 PRK06451 isocitrate dehydrogen 100.0 1E-109 2E-114 834.0 35.2 331 39-372 22-408 (412)
16 PRK00772 3-isopropylmalate deh 100.0 6E-109 1E-113 817.9 35.2 327 41-372 2-355 (358)
17 PRK07006 isocitrate dehydrogen 100.0 8E-109 2E-113 828.5 35.4 330 40-372 19-409 (409)
18 TIGR02088 LEU3_arch isopropylm 100.0 9E-109 2E-113 807.3 34.7 321 44-369 1-322 (322)
19 TIGR00183 prok_nadp_idh isocit 100.0 1E-107 3E-112 823.0 35.4 337 33-372 19-416 (416)
20 PRK07362 isocitrate dehydrogen 100.0 4E-107 8E-112 815.1 34.7 327 44-372 31-474 (474)
21 PF00180 Iso_dh: Isocitrate/is 100.0 4E-106 8E-111 799.7 23.3 323 43-368 1-348 (348)
22 KOG0784 Isocitrate dehydrogena 100.0 8E-103 2E-107 751.3 29.7 334 36-372 37-372 (375)
23 PRK08299 isocitrate dehydrogen 100.0 5.7E-99 1E-103 752.3 35.6 330 35-372 1-398 (402)
24 PLN00103 isocitrate dehydrogen 100.0 1E-96 2E-101 737.6 34.9 330 37-372 5-406 (410)
25 PTZ00435 isocitrate dehydrogen 100.0 1.1E-92 2.4E-97 708.4 33.4 333 35-372 3-406 (413)
26 TIGR00127 nadp_idh_euk isocitr 100.0 1.3E-92 2.9E-97 707.1 32.7 332 36-372 1-403 (409)
27 PLN03065 isocitrate dehydrogen 100.0 4.2E-90 9.2E-95 697.4 36.7 329 37-372 73-473 (483)
28 KOG0786 3-isopropylmalate dehy 100.0 1.4E-86 3E-91 618.4 23.4 329 40-371 3-357 (363)
29 COG0538 Icd Isocitrate dehydro 100.0 4.1E-84 9E-89 630.6 30.9 330 41-372 18-406 (407)
30 PLN00096 isocitrate dehydrogen 100.0 1.5E-73 3.2E-78 564.3 32.0 317 45-372 2-393 (393)
31 KOG1526 NADP-dependent isocitr 100.0 7.6E-40 1.7E-44 311.8 21.0 334 35-372 12-413 (422)
32 PF03971 IDH: Monomeric isocit 97.4 0.0049 1.1E-07 65.0 15.0 187 167-356 443-648 (735)
33 TIGR00178 monomer_idh isocitra 97.0 0.01 2.2E-07 62.8 13.4 184 167-356 447-652 (741)
34 COG2838 Icd Monomeric isocitra 96.2 0.06 1.3E-06 56.1 12.0 167 176-349 458-647 (744)
35 PF04166 PdxA: Pyridoxal phosp 94.1 0.034 7.5E-07 54.9 2.7 134 180-323 151-296 (298)
36 PRK03371 pdxA 4-hydroxythreoni 93.1 0.065 1.4E-06 53.6 2.8 136 180-326 177-324 (326)
37 PRK00232 pdxA 4-hydroxythreoni 93.0 0.067 1.5E-06 53.6 2.7 136 180-326 178-325 (332)
38 PRK03743 pdxA 4-hydroxythreoni 92.8 0.075 1.6E-06 53.3 2.6 137 180-327 178-326 (332)
39 COG1995 PdxA Pyridoxal phospha 92.6 0.078 1.7E-06 52.8 2.5 63 256-325 259-323 (332)
40 PRK01909 pdxA 4-hydroxythreoni 92.5 0.086 1.9E-06 52.8 2.7 137 180-327 173-322 (329)
41 PRK02746 pdxA 4-hydroxythreoni 92.4 0.09 2E-06 52.9 2.6 138 180-326 180-338 (345)
42 PRK05312 pdxA 4-hydroxythreoni 92.4 0.092 2E-06 52.7 2.7 135 180-327 182-331 (336)
43 TIGR00557 pdxA 4-hydroxythreon 92.3 0.095 2.1E-06 52.3 2.7 136 180-326 170-318 (320)
44 PRK03946 pdxA 4-hydroxythreoni 92.1 0.1 2.3E-06 51.7 2.7 132 180-326 158-302 (307)
45 PRK07742 phosphate butyryltran 79.9 65 0.0014 31.7 18.4 242 37-316 11-291 (299)
46 KOG1671 Ubiquinol cytochrome c 78.6 1.6 3.4E-05 40.8 2.4 48 250-314 141-189 (210)
47 TIGR00651 pta phosphate acetyl 72.1 27 0.00059 34.6 9.5 98 182-279 157-269 (303)
48 PRK12862 malic enzyme; Reviewe 71.5 23 0.0005 39.6 9.7 99 180-278 608-720 (763)
49 PRK08190 bifunctional enoyl-Co 70.1 1.5E+02 0.0032 31.2 19.7 241 36-313 171-448 (466)
50 PRK12861 malic enzyme; Reviewe 69.7 32 0.00069 38.5 10.2 127 182-313 611-751 (764)
51 PRK07232 bifunctional malic en 68.3 34 0.00073 38.3 10.0 98 182-279 602-713 (752)
52 PF12847 Methyltransf_18: Meth 62.8 32 0.0007 27.4 6.7 62 191-263 14-78 (112)
53 PRK05805 phosphate butyryltran 61.9 1.1E+02 0.0025 30.1 11.6 105 182-292 149-273 (301)
54 cd07186 CofD_like LPPG:FO 2-ph 54.9 54 0.0012 32.7 7.9 102 89-194 172-302 (303)
55 PRK09653 eutD phosphotransacet 54.8 71 0.0015 31.8 8.8 97 182-279 173-284 (324)
56 TIGR01819 F420_cofD LPPG:FO 2- 54.4 59 0.0013 32.4 8.0 20 90-109 172-191 (297)
57 TIGR00853 pts-lac PTS system, 49.9 66 0.0014 26.2 6.5 57 40-109 2-59 (95)
58 PF03602 Cons_hypoth95: Conser 49.5 52 0.0011 30.0 6.4 81 192-277 56-138 (183)
59 PTZ00435 isocitrate dehydrogen 47.8 18 0.00039 37.6 3.4 23 149-171 127-149 (413)
60 cd06308 PBP1_sensor_kinase_lik 47.4 1.4E+02 0.003 27.4 9.2 95 183-283 105-207 (270)
61 PF01515 PTA_PTB: Phosphate ac 47.2 70 0.0015 32.0 7.4 98 182-279 173-285 (319)
62 PRK15490 Vi polysaccharide bio 44.5 1.1E+02 0.0025 33.2 8.9 104 174-280 164-305 (578)
63 PF13684 Dak1_2: Dihydroxyacet 42.2 1.8E+02 0.0039 28.9 9.4 167 42-242 98-301 (313)
64 TIGR02706 P_butyryltrans phosp 41.2 2.2E+02 0.0048 27.9 9.8 115 182-303 145-276 (294)
65 PRK10499 PTS system N,N'-diace 40.5 1E+02 0.0022 25.7 6.2 55 41-108 3-58 (106)
66 COG0655 WrbA Multimeric flavod 39.9 1.4E+02 0.003 27.4 7.7 83 42-129 4-99 (207)
67 TIGR02709 branched_ptb branche 39.7 3.8E+02 0.0082 26.3 12.7 130 182-326 125-270 (271)
68 cd06322 PBP1_ABC_sugar_binding 37.3 2.8E+02 0.0062 25.2 9.5 76 184-263 105-187 (267)
69 cd06323 PBP1_ribose_binding Pe 36.2 2.3E+02 0.0049 25.7 8.6 79 182-263 103-189 (268)
70 cd06320 PBP1_allose_binding Pe 35.9 2.6E+02 0.0057 25.6 9.1 68 201-273 121-197 (275)
71 PRK11041 DNA-binding transcrip 35.2 1.5E+02 0.0033 27.8 7.5 75 191-270 141-225 (309)
72 cd05564 PTS_IIB_chitobiose_lic 35.1 1.2E+02 0.0026 24.6 5.8 54 43-109 1-55 (96)
73 KOG1014 17 beta-hydroxysteroid 35.0 67 0.0015 32.2 5.0 44 192-244 65-108 (312)
74 cd01988 Na_H_Antiporter_C The 34.6 2.4E+02 0.0052 22.6 8.1 28 184-212 10-37 (132)
75 PRK03743 pdxA 4-hydroxythreoni 34.0 35 0.00076 34.4 2.9 21 40-60 2-24 (332)
76 KOG3040 Predicted sugar phosph 33.6 86 0.0019 30.1 5.2 88 188-276 125-220 (262)
77 PRK10310 PTS system galactitol 33.4 1.6E+02 0.0034 23.8 6.2 55 41-108 2-58 (94)
78 TIGR00127 nadp_idh_euk isocitr 32.4 42 0.0009 34.9 3.2 23 149-171 124-146 (409)
79 PRK13606 LPPG:FO 2-phospho-L-l 31.6 2.9E+02 0.0063 27.6 8.8 101 89-198 174-302 (303)
80 COG0280 Pta Phosphotransacetyl 31.6 3E+02 0.0065 27.8 9.0 117 182-303 174-305 (327)
81 PF00532 Peripla_BP_1: Peripla 31.4 1.2E+02 0.0026 29.0 6.1 77 191-273 107-195 (279)
82 KOG0189 Phosphoadenosine phosp 31.3 1.3E+02 0.0028 28.8 5.9 63 194-260 62-126 (261)
83 cd01545 PBP1_SalR Ligand-bindi 30.6 3.1E+02 0.0068 24.8 8.6 89 189-282 105-203 (270)
84 TIGR02069 cyanophycinase cyano 30.3 2E+02 0.0044 27.5 7.4 62 41-109 28-91 (250)
85 cd06309 PBP1_YtfQ_like Peripla 30.1 3.7E+02 0.0081 24.6 9.1 73 190-263 110-193 (273)
86 COG0372 GltA Citrate synthase 30.0 31 0.00067 35.6 1.8 55 267-349 210-264 (390)
87 cd06270 PBP1_GalS_like Ligand 29.8 2.7E+02 0.0059 25.4 8.1 22 52-73 13-34 (268)
88 TIGR02469 CbiT precorrin-6Y C5 29.5 2.2E+02 0.0048 22.6 6.6 65 192-266 33-99 (124)
89 cd02975 PfPDO_like_N Pyrococcu 28.7 2.1E+02 0.0046 23.5 6.4 58 185-244 6-63 (113)
90 cd06294 PBP1_ycjW_transcriptio 28.5 3.7E+02 0.008 24.3 8.7 73 190-263 110-191 (270)
91 cd00293 USP_Like Usp: Universa 28.4 2.8E+02 0.0062 21.5 9.2 80 183-263 9-101 (130)
92 cd03470 Rieske_cytochrome_bc1 28.3 36 0.00078 29.3 1.7 24 290-314 82-105 (126)
93 PRK00232 pdxA 4-hydroxythreoni 28.1 51 0.0011 33.3 2.9 21 40-60 3-25 (332)
94 cd06305 PBP1_methylthioribose_ 27.9 3.6E+02 0.0078 24.5 8.5 77 183-263 103-191 (273)
95 PLN02456 citrate synthase 27.5 47 0.001 35.0 2.7 45 293-356 288-332 (455)
96 cd06300 PBP1_ABC_sugar_binding 27.0 4.9E+02 0.011 23.7 9.3 80 183-265 108-195 (272)
97 PRK12350 citrate synthase 2; P 26.8 52 0.0011 33.5 2.7 45 293-356 197-241 (353)
98 COG1618 Predicted nucleotide k 26.7 4.8E+02 0.01 24.1 8.6 96 180-278 80-177 (179)
99 cd06287 PBP1_LacI_like_8 Ligan 25.6 4.6E+02 0.0099 24.4 8.9 73 189-263 105-186 (269)
100 COG1995 PdxA Pyridoxal phospha 25.3 56 0.0012 33.0 2.6 18 40-57 2-21 (332)
101 PRK11890 phosphate acetyltrans 25.1 5.6E+02 0.012 25.7 9.6 97 182-279 154-267 (312)
102 PRK05312 pdxA 4-hydroxythreoni 24.7 63 0.0014 32.7 2.9 20 41-60 3-24 (336)
103 cd06313 PBP1_ABC_sugar_binding 24.7 4.6E+02 0.0099 24.2 8.7 84 183-273 106-198 (272)
104 cd01537 PBP1_Repressors_Sugar_ 24.4 4.2E+02 0.0092 23.4 8.2 74 189-263 105-186 (264)
105 PRK12475 thiamine/molybdopteri 24.4 4.6E+02 0.01 26.2 9.0 76 193-274 40-138 (338)
106 COG0391 Uncharacterized conser 24.2 1E+02 0.0023 31.0 4.3 52 90-142 179-235 (323)
107 cd06288 PBP1_sucrose_transcrip 24.2 3.6E+02 0.0079 24.4 7.8 74 188-263 102-185 (269)
108 COG0723 QcrA Rieske Fe-S prote 24.0 60 0.0013 29.2 2.4 41 269-314 104-145 (177)
109 PF07820 TraC: TraC-like prote 24.0 1E+02 0.0022 25.5 3.4 38 182-232 22-59 (92)
110 cd01574 PBP1_LacI Ligand-bindi 23.8 5.1E+02 0.011 23.4 8.7 52 53-111 14-67 (264)
111 cd06311 PBP1_ABC_sugar_binding 23.5 5.6E+02 0.012 23.4 9.0 59 201-263 126-193 (274)
112 PF03358 FMN_red: NADPH-depend 23.2 2.1E+02 0.0046 24.3 5.6 82 43-131 2-96 (152)
113 cd06063 H2MP_Cyano-H2up This g 22.6 1.4E+02 0.003 26.0 4.4 45 49-106 13-57 (146)
114 PRK00107 gidB 16S rRNA methylt 22.0 4.1E+02 0.009 24.2 7.6 60 192-263 59-120 (187)
115 cd06273 PBP1_GntR_like_1 This 21.8 4.5E+02 0.0097 23.8 7.9 24 50-73 11-34 (268)
116 cd02072 Glm_B12_BD B12 binding 21.6 1.8E+02 0.0039 25.3 4.8 56 43-112 3-62 (128)
117 PF01547 SBP_bac_1: Bacterial 21.4 2E+02 0.0044 26.5 5.5 42 220-261 9-57 (315)
118 PRK05331 putative phosphate ac 21.2 3.7E+02 0.008 27.0 7.6 86 182-273 151-240 (334)
119 cd01536 PBP1_ABC_sugar_binding 21.0 5.9E+02 0.013 22.7 8.4 78 183-263 104-189 (267)
No 1
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1.3e-121 Score=909.21 Aligned_cols=371 Identities=84% Similarity=1.278 Sum_probs=359.3
Q ss_pred ChhHHHHHHhccccccccccCCCCCCCcccccccccCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeec
Q 017413 1 MATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGT 80 (372)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~ 80 (372)
||.|+|||.+|.|-.|||.....+..--..+.|.||....+++|++|||||||||||+++++||++++++|+|+++++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~ 80 (372)
T PLN00118 1 MAAQLLRRLLGNRLAQILGASSSSSGAFSSSARAFSSSSTPITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGT 80 (372)
T ss_pred ChHHHHHHHhcccchhhhccccccCCCCcHHHHhhccCCCCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcH
Confidence 89999999999999999998887776666778999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcHHHHHHHHhcCeEEECcccCCCCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCC
Q 017413 81 EIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTE 160 (372)
Q Consensus 81 ~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnte 160 (372)
++++++|+++|++++++|+++|++||||+++|...+++|+++.|||+||||+||||||++||+++|++++|+||||||||
T Consensus 81 ~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~~~~s~~~~LRk~ldLyaNvRPvr~~pg~~~~~~~iD~vIVREnte 160 (372)
T PLN00118 81 TVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELGLYANVRPCYSLPGYKTRYDDVDLVTIRENTE 160 (372)
T ss_pred HHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccccccCchHHHHHHcCCeeeecccccCCCccCcccCceEEEEEecCC
Confidence 99999999999999999999999999999999755678899999999999999999999999999999999999999999
Q ss_pred cccccceeeeeCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeE
Q 017413 161 GEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV 240 (372)
Q Consensus 161 G~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~ 240 (372)
|+|+|.+++..+|+++++++|||+++|||+|+||+||++|++|+||++||+|||+.|||||+++|+||+++||+|+++++
T Consensus 161 G~Y~g~~~~~~~gv~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva~eyPdI~~~~~ 240 (372)
T PLN00118 161 GEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVAEKYPEIVYEEV 240 (372)
T ss_pred CcccceeeeccCCeEEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHHhhCCCceEEee
Confidence 99999998877889999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC-ceeEeccCCCCcccccCCCCCChhhHHH
Q 017413 241 VIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG-GIALAEAVHGSAPDIAGKNLANPTALLL 319 (372)
Q Consensus 241 ~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~-~a~FEp~HGsApd~iaGk~iANPia~Il 319 (372)
+||++||+||++|++||||||+|||||||||++++++||+||+||+|||++ ++||||+|||||| |||||+|||+|+||
T Consensus 241 ~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~~a~FEpvHGSAPd-IAGk~iANP~A~Il 319 (372)
T PLN00118 241 IIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENGLALAEAVHGSAPD-IAGKNLANPTALLL 319 (372)
T ss_pred eHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCCCeEEECCCCChhh-hCCCCCcCcHHHHH
Confidence 999999999999999999999999999999999999999999999999988 7999999999999 99999999999999
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCCCCCCHHHHHHHHHHhC
Q 017413 320 SSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 320 s~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~DlgG~~~T~e~~dav~~~l 372 (372)
|++|||+|||++++|++|++||.+++++|+++|+||||+++|+||+|+|+++|
T Consensus 320 S~amML~~lG~~~~A~~I~~Av~~~l~~G~~~T~DlGG~~sT~e~~dav~~~l 372 (372)
T PLN00118 320 SAVMMLRHLKLNEQAEQIHNAILNTIAEGKYRTADLGGSSTTTDFTKAICDHL 372 (372)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHcCCccCcccCCCcCHHHHHHHHHhhC
Confidence 99999999999999999999999999999779999999999999999999986
No 2
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-120 Score=878.90 Aligned_cols=333 Identities=43% Similarity=0.695 Sum_probs=318.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhcC---CCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC-
Q 017413 39 ITPITATLFPGDGIGPEIAESVKQVFRTAE---VPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG- 114 (372)
Q Consensus 39 ~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~---~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~- 114 (372)
+++|+|+||||||||||||+++++||+++. ++|+|+++++|+++++++|+++|+++++.|+++|++||||+++|..
T Consensus 1 ~~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~ 80 (348)
T COG0473 1 MKTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWD 80 (348)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCC
Confidence 467999999999999999999999999986 8999999999999999999999999999999999999999999952
Q ss_pred ---CCCCcccHHHHHhhcceeeeEeccCCCCCCCcC-CCccEEEeecCCCcccccceee-eeCC-eEEEeecccHHHHHH
Q 017413 115 ---KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY-DDVNLITIRENTEGEYSGLEHQ-VVRG-VVESLKIITRQASLR 188 (372)
Q Consensus 115 ---~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~-~~iDivIvREnteG~Y~g~~~~-~~~~-~a~~~~~~Tr~~~eR 188 (372)
.++++.++.|||+||||||+||+|++||+++++ +++|||||||||||+|+|.++. ..++ +++++++|||+++||
T Consensus 81 ~~~~~~~~~ll~lRk~l~lyANlRP~k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~eva~~~~~~Tr~~~eR 160 (348)
T COG0473 81 PLPRPERGLLLALRKELDLYANLRPAKSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGGEVAIDTKVITRKGSER 160 (348)
T ss_pred CCCCcccchHHHHHHhcCceeeeeecccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCCeEEEEEEeccHHHHHH
Confidence 366789999999999999999999999999988 6899999999999999999884 3445 899999999999999
Q ss_pred HHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhh
Q 017413 189 VAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDI 268 (372)
Q Consensus 189 iar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDI 268 (372)
|+|+|||+|++|++||||+|||+|||+.+|+||+++|+|++++||||+++|++||+++||||++|++||||||+||||||
T Consensus 161 I~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDI 240 (348)
T COG0473 161 IARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDI 240 (348)
T ss_pred HHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhHHhHHHHHHHHhhCccccCEEEEccchhHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHH
Q 017413 269 ISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 346 (372)
Q Consensus 269 lSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~ 346 (372)
|||+||+|+|||||+||||+|++ ++||||+|||||| |||||||||+|+|||++|||+|+|..++|++|++||+++|+
T Consensus 241 LSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPD-IAGkgiANPiA~IlS~aMML~~~g~~~~A~~Ie~Av~~vl~ 319 (348)
T COG0473 241 LSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPD-IAGKGIANPIATILSAAMMLRHLGEKEAADAIENAVEKVLA 319 (348)
T ss_pred HHhHHHHhcCccccCccCccCCCCCCceeecCCCCccc-ccCCCccChHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999997 9999999999999 99999999999999999999999999999999999999999
Q ss_pred cCCccCCCCCCCCCHHHHHHHHHHhC
Q 017413 347 EGKYRTADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 347 ~G~~~T~DlgG~~~T~e~~dav~~~l 372 (372)
++.++|+||||+++|.||+|+|+++|
T Consensus 320 ~~g~~T~Dlgg~~~T~e~~d~I~~~l 345 (348)
T COG0473 320 EGGIRTPDLGGNATTSEVGDAIAKAL 345 (348)
T ss_pred cCCCCCcccCCCccHHHHHHHHHHHH
Confidence 63369999999999999999999875
No 3
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-117 Score=867.11 Aligned_cols=331 Identities=47% Similarity=0.832 Sum_probs=320.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCCCCCcc
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL 120 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~~~~s~ 120 (372)
+++|++|||||||||||+++++||++++++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.+++++++
T Consensus 2 ~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~~~~~~ 81 (334)
T PRK08997 2 KQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGEGFTSI 81 (334)
T ss_pred CcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCcCccch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999976667788
Q ss_pred cHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCC--eEEEeecccHHHHHHHHHHHHHHHH
Q 017413 121 NLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRG--VVESLKIITRQASLRVAEYAFHYAK 198 (372)
Q Consensus 121 ~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~--~a~~~~~~Tr~~~eRiar~AFe~A~ 198 (372)
++.|||+||||+|+||||++||+++|++++|++||||||||+|+|.+++..++ +++++++|||++++||+|+||++|+
T Consensus 82 ~~~LR~~ldlyanvRP~k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~a~~~~~~Tr~~~eRi~r~Af~~A~ 161 (334)
T PRK08997 82 NVTLRKKFDLYANVRPVLSFPGTKARYDNIDIITVRENTEGMYSGEGQTVSEDGETAEATSIITRKGAERIVRFAYELAR 161 (334)
T ss_pred HHHHHHHcCCeEEEeecccCCCCCCccCCcCEEEEEeccCceecCccceecCCCceEEEEEEeeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998754332 8999999999999999999999999
Q ss_pred hCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcC
Q 017413 199 THGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIG 278 (372)
Q Consensus 199 ~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~G 278 (372)
+|++|+||++||+|||+.||+||+++|+||+++||+|+++|++||+++|+||++|++||||||+|||||||||++++++|
T Consensus 162 ~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yP~V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~G 241 (334)
T PRK08997 162 KEGRKKVTAVHKANIMKSTSGLFLKVAREVALRYPDIEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVG 241 (334)
T ss_pred hcCCCeEEEEeCCCcchhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcC
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCCCC
Q 017413 279 GLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGS 358 (372)
Q Consensus 279 glGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~DlgG~ 358 (372)
|+||+||+|+|++++||||+|||||| |||||+|||+|+|||++|||+|||++++|++|++||.+++++|+.+|+||||+
T Consensus 242 glGl~psanig~~~a~FEp~HGSAPd-IAGk~iANP~a~IlS~amML~~lG~~~~A~~i~~AV~~vl~~G~~~T~DlGG~ 320 (334)
T PRK08997 242 GLGMAPGANIGRDAAIFEAVHGSAPD-IAGKNLANPTSVILAAIQMLEYLGMPDKAERIRKAIVAVIEAGDRTTRDLGGT 320 (334)
T ss_pred CCCcCcceeECCCceEEECCCCchhh-hCCCCccCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHcCCccCcccCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999997689999999
Q ss_pred CCHHHHHHHHHHhC
Q 017413 359 STTSDFTKAICDHL 372 (372)
Q Consensus 359 ~~T~e~~dav~~~l 372 (372)
++|+||+|+|+++|
T Consensus 321 a~T~e~~~av~~~l 334 (334)
T PRK08997 321 HGTTDFTQAVIDRL 334 (334)
T ss_pred cCHHHHHHHHHhhC
Confidence 99999999999986
No 4
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-115 Score=852.59 Aligned_cols=325 Identities=38% Similarity=0.634 Sum_probs=316.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCCCCCccc
Q 017413 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLN 121 (372)
Q Consensus 42 ~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~~~~s~~ 121 (372)
++|++|||||||||||+++++||++++++++|+++++|.++++++|+++|++++++|+++|++||||+++|. .+.+
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~----~~~~ 77 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA----ADVI 77 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc----cchH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999983 4679
Q ss_pred HHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHHHHHHHHHhC-
Q 017413 122 LTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTH- 200 (372)
Q Consensus 122 ~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r- 200 (372)
+.|||+||||+|+||||++||+++|++++|++||||||||+|+|.+++..+++++++++|||++++||+|+||+||++|
T Consensus 78 ~~LR~~ldlyanvRP~r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~ 157 (330)
T PRK14025 78 VKLRRILDTYANVRPVKSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIADGVTVATRVITRKASERIFRFAFEMAKRRK 157 (330)
T ss_pred HHHHHHcCCeEEEEEeecCCCCCCccCCcCEEEEEECCCceecCcccccCCCceEEeEeccHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999887788999999999999999999999999999
Q ss_pred ---CCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhc
Q 017413 201 ---GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLI 277 (372)
Q Consensus 201 ---~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~ 277 (372)
++|+||++||+|||+.|||||+++|+||+++||+|++++++||++||+||++|++||||||+|||||||||++++++
T Consensus 158 ~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva~~yp~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~ 237 (330)
T PRK14025 158 KMGKEGKVTCAHKANVLKKTDGLFKKTFYEVAKEYPDIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLV 237 (330)
T ss_pred ccCCCCeEEEEECCCchhhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCCC
Q 017413 278 GGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGG 357 (372)
Q Consensus 278 GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~DlgG 357 (372)
||+||+||+|+|++++||||+|||||| |||||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+||||
T Consensus 238 GglGl~psanig~~~a~FEp~HGSAPd-iAGk~iANP~a~IlS~ammL~~lG~~~~A~~I~~Av~~vl~~g-~~T~DlGG 315 (330)
T PRK14025 238 GGLGLAPSANIGDKYGLFEPVHGSAPD-IAGKGIANPTATILTAVLMLRHLGENEEADKVEKALEEVLALG-LTTPDLGG 315 (330)
T ss_pred CCCCcccceeeCCCcceeEcCCCCchh-hCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CCCcccCC
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999 59999999
Q ss_pred CCCHHHHHHHHHHhC
Q 017413 358 SSTTSDFTKAICDHL 372 (372)
Q Consensus 358 ~~~T~e~~dav~~~l 372 (372)
++||+||+|+|+++|
T Consensus 316 ~~~T~e~~~av~~~~ 330 (330)
T PRK14025 316 NLSTMEMAEEVAKRV 330 (330)
T ss_pred CcCHHHHHHHHHHhC
Confidence 999999999999876
No 5
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=2.6e-114 Score=852.99 Aligned_cols=331 Identities=52% Similarity=0.863 Sum_probs=318.7
Q ss_pred cCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCC
Q 017413 36 SSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK 115 (372)
Q Consensus 36 ~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~ 115 (372)
++++++++|++|||||||||||+++++||++++++++|+++++|++ |+++|++++++|+++|++||||+++|.+.
T Consensus 25 ~~~~~~~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~~~ 99 (360)
T PLN00123 25 PGDGAPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPVGG 99 (360)
T ss_pred ccCCCceEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCCCc
Confidence 4566779999999999999999999999999999999999999876 57899999999999999999999999655
Q ss_pred CCCcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHHHHHH
Q 017413 116 GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFH 195 (372)
Q Consensus 116 ~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AFe 195 (372)
+.+++++.||++||||+|+||||++||++++++++|++||||||||+|+|.|++..+++++++++|||+++|||+|+||+
T Consensus 100 ~~~s~~l~LR~~ldLyaNvRP~k~~pg~~~~~~~iD~viVREnteG~Y~g~~~~~~~g~~~~~~v~Tr~~~eRIar~AF~ 179 (360)
T PLN00123 100 GVSSLNVQLRKELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFE 179 (360)
T ss_pred CccchHHHHHHHcCCEEEEEEeecCCCCCCccCCCCEEEEEeCCCceeccceeecCCCceEEEEEecHHHHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999998877889999999999999999999999
Q ss_pred HHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhh
Q 017413 196 YAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAG 275 (372)
Q Consensus 196 ~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~ 275 (372)
||++|++|+||++||+|||+.+||||+++|+||+++||+|+++|++||++||+||++|++||||||+|||||||||+||+
T Consensus 180 ~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva~eyPdV~~~~~~VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~ 259 (360)
T PLN00123 180 YAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAG 259 (360)
T ss_pred HHHhcCCCcEEEEECCccccchhhHHHHHHHHHHhhCCCceEeeeeHHHHHHHHhhCcccCcEEEEcCcccchhhhHHHH
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccccccCCCceeEeccC--CCC--cccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCcc
Q 017413 276 LIGGLGLTPSCNIGEGGIALAEAV--HGS--APDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYR 351 (372)
Q Consensus 276 l~GglGl~pSanig~~~a~FEp~H--GsA--pd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~ 351 (372)
|+||+||+||+|||++++||||+| ||| || ||||++|||+|+|||++|||+|||++++|++|++||.+++++|+.+
T Consensus 260 l~GglGl~pSanig~~~a~FEpvh~hGSA~~Pd-IAGk~iANP~a~IlS~amML~~lG~~~~A~~I~~AV~~~l~~G~~~ 338 (360)
T PLN00123 260 IAGGTGVMPGGNVGADHAVFEQGASAGNVGNEK-LVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIAEGKYR 338 (360)
T ss_pred hcCCcCccceEeeCCCceEEEecccCCCcCCcc-ccCCCccChHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcCCcc
Confidence 999999999999999999999977 999 99 9999999999999999999999999999999999999999999669
Q ss_pred CCCCCCCCCHHHHHHHHHHhC
Q 017413 352 TADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 352 T~DlgG~~~T~e~~dav~~~l 372 (372)
|+||||++||+||+|+|+++|
T Consensus 339 T~DlGG~~sT~e~~~ai~~~l 359 (360)
T PLN00123 339 TKDLGGSSTTQEVVDAVIANL 359 (360)
T ss_pred CcccCCCcCHHHHHHHHHHhh
Confidence 999999999999999999876
No 6
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-115 Score=825.96 Aligned_cols=340 Identities=65% Similarity=1.081 Sum_probs=329.8
Q ss_pred cccccCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccC
Q 017413 32 ARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMAT 111 (372)
Q Consensus 32 ~~~~~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~ 111 (372)
.|.+....++++|++||||||||||++++++|++++.+||+|+++|++......++..+|++++++++++.++||||+.+
T Consensus 26 ~~~~~~~~~~~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~t 105 (365)
T KOG0785|consen 26 ARAFNSATKTITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVAT 105 (365)
T ss_pred cccccCCCCceEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccC
Confidence 34444455678999999999999999999999999999999999999877665688899999999999999999999999
Q ss_pred CCCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHH
Q 017413 112 PIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAE 191 (372)
Q Consensus 112 p~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar 191 (372)
|.+++++|+|++|||+|+||||||||++++|..+||+++|+|+|||||||+|||+||+..+||++++|+||+..++||++
T Consensus 106 Pi~kgh~S~nl~LRK~f~LyANVRPc~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~vvpGVvqsiK~IT~~AS~Ria~ 185 (365)
T KOG0785|consen 106 PIGKGHRSLNLALRKEFGLYANVRPCKSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQVVPGVVQSIKLITEAASRRIAE 185 (365)
T ss_pred ccccccccHHHHHHHHhchhccceecccccCCcCCCCCceEEEEecCCccccccceeeccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHH
Q 017413 192 YAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISD 271 (372)
Q Consensus 192 ~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSD 271 (372)
|||+||++++|++||++||+|||+.+||||+++|+|++++||||.+|++++|++|++|+++|+.|||+|+||||||||||
T Consensus 186 ~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a~~y~dI~~eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD 265 (365)
T KOG0785|consen 186 YAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVAKKYPDIKFEEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSD 265 (365)
T ss_pred HHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHhhhCCccchhHHHHHHHHHHHhcCchhceEEeccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCcc
Q 017413 272 LCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYR 351 (372)
Q Consensus 272 laa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~ 351 (372)
+|++|+||||+.||+|||+..++||++|||||| ||||++|||+|.+||++|||+|+|+.++|+.|+.||.+++++|+++
T Consensus 266 ~~agLvGgLGltPS~NiG~g~~~~e~vHGsAPD-IAGkdlANPtAlllS~vmMLrhm~l~~~A~~I~~Av~~ti~eg~~r 344 (365)
T KOG0785|consen 266 LCAGLVGGLGLTPSANIGDGIVIFEAVHGSAPD-IAGKDLANPTALLLSAVMMLRHMGLNDQADQIESAVFKTIAEGKIR 344 (365)
T ss_pred HHHHhccCcccCCCcccCCCeeeeecccCCCcc-cccCCcCCcHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhccCcc
Confidence 999999999999999999889999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhC
Q 017413 352 TADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 352 T~DlgG~~~T~e~~dav~~~l 372 (372)
|+||||+++|+||+++|+++|
T Consensus 345 T~DLGGka~~seft~aVc~~l 365 (365)
T KOG0785|consen 345 TPDLGGKATTSEFTDAVCDRL 365 (365)
T ss_pred CcccCCCccchHHHHHHHhcC
Confidence 999999999999999999986
No 7
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-113 Score=849.50 Aligned_cols=330 Identities=28% Similarity=0.498 Sum_probs=311.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc-----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCC-
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTA-----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI- 113 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~-----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~- 113 (372)
+.++|+||||||||||||+++++||+++ +++++|+++++|+++++++|+++|++++++||++|++||||+++|.
T Consensus 2 ~~~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~ 81 (352)
T PRK08194 2 KQFKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKL 81 (352)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCc
Confidence 4589999999999999999999999976 5899999999999999999999999999999999999999999995
Q ss_pred CCCCCc---ccHHHHHhhcceeeeEeccCCCCCCCcC---CCccEEEeecCCCcccccceeeee---CCeEEEeecccHH
Q 017413 114 GKGHRS---LNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVV---RGVVESLKIITRQ 184 (372)
Q Consensus 114 ~~~~~s---~~~~LR~~ldlyanvRP~k~~pg~~~~~---~~iDivIvREnteG~Y~g~~~~~~---~~~a~~~~~~Tr~ 184 (372)
.+++++ +++.|||+||||+|+||||++||+++|+ +++|+|||||||||+|+|.+++.. .++++++++|||+
T Consensus 82 ~~~~~~~~~~~l~LR~~ldLyaNvRP~k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~~g~~~~a~~~~~~Tr~ 161 (352)
T PRK08194 82 VPDHISLWGLLIKIRREFEQVINIRPAKQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIHRGEDEIAIQNAVFTRK 161 (352)
T ss_pred CCCCCCchhhHHHHHHHcCCEEEEEeeecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCccccCCccceEEEEEEeeHH
Confidence 233334 4999999999999999999999999997 689999999999999999875542 2468999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCc
Q 017413 185 ASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNL 264 (372)
Q Consensus 185 ~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~Nl 264 (372)
++|||+|+||++|++| +++||+|||+|||+.+|+||+++|+||+++||+|+++|++||++||+||++|++||||||+||
T Consensus 162 ~~eRI~r~Af~~A~~r-~~~Vt~v~KaNvl~~t~~lf~~~~~eva~~yp~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~Nl 240 (352)
T PRK08194 162 GTERAMRYAFELAAKR-RKHVTSATKSNGIVHSMPFWDEVFQEVGKDYPEIETDSQHIDALAAFFVTRPEEFDVIVASNL 240 (352)
T ss_pred HHHHHHHHHHHHHHHc-CCcEEEEeCcchhhhhHHHHHHHHHHHHhhCCCceeeehhHHHHHHHHhhChhhCcEEEEccc
Confidence 9999999999999998 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhhhcCCCCcccccccCCC--c-eeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHH
Q 017413 265 YGDIISDLCAGLIGGLGLTPSCNIGEG--G-IALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI 341 (372)
Q Consensus 265 fGDIlSDlaa~l~GglGl~pSanig~~--~-a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av 341 (372)
|||||||++++|+||+||+||+|||++ + +||||+|||||| |||||+|||+|+|||++|||+|||++++|++|++||
T Consensus 241 fGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAPd-iAGk~iANP~a~IlS~amML~~lg~~~~A~~i~~Av 319 (352)
T PRK08194 241 FGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAPD-IAGKGIANPIGQIWTAKLMLDHFGEEELGSHLLDVI 319 (352)
T ss_pred hHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCchh-hCCCCcCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 999999999999999999999999954 3 999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHcCCccCCCCCCCCCHHHHHHHHHHhC
Q 017413 342 LSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 342 ~~~l~~G~~~T~DlgG~~~T~e~~dav~~~l 372 (372)
.+++++| ++|+||||++||+||+++|+++|
T Consensus 320 ~~~l~~g-~~T~DlGG~~~T~e~~~ai~~~l 349 (352)
T PRK08194 320 EDVTEDG-IKTPDIGGRATTDEVTDEIISRL 349 (352)
T ss_pred HHHHHcC-CCcCcCCCCcCHHHHHHHHHHHH
Confidence 9999999 69999999999999999999875
No 8
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=8.2e-113 Score=840.20 Aligned_cols=331 Identities=62% Similarity=0.997 Sum_probs=318.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCCC-C
Q 017413 39 ITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKG-H 117 (372)
Q Consensus 39 ~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~~-~ 117 (372)
+++++|+||||||||||||+++++||++++++++|+++++|++ +++|+++|++++++|+++|++||||+++|...+ +
T Consensus 1 ~g~~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~~~ 78 (333)
T TIGR00175 1 GGKYTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGKGGH 78 (333)
T ss_pred CCcEEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCccccccc
Confidence 3568999999999999999999999999999999999999987 568999999999999999999999999986444 7
Q ss_pred CcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHHHHHHHH
Q 017413 118 RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYA 197 (372)
Q Consensus 118 ~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A 197 (372)
+|+++.||++||||+|+||||++||+++|++++|++||||||||+|+|.+++..+++++++++|||++++||+|+||+||
T Consensus 79 ~s~~~~lR~~ldlyanvRP~k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~eRi~r~Af~~A 158 (333)
T TIGR00175 79 RSLNVALRKELDLYANVVHCKSLPGFKTRHEDVDIVIIRENTEGEYSGLEHESVPGVVESLKVITRDKSERIARYAFEYA 158 (333)
T ss_pred cchhHHHHHHcCCEEEeEEecCCCCCCCCCCCcCEEEEEEeCCCcccceeEeccCCeEEEEEecCHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999877788999999999999999999999999
Q ss_pred HhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhc
Q 017413 198 KTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLI 277 (372)
Q Consensus 198 ~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~ 277 (372)
++|++|+||++||+|||+.+|+||+++|+|++++||+|+++|++||+++|+||++|++||||||+|||||||||++++++
T Consensus 159 ~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~yp~v~~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~ 238 (333)
T TIGR00175 159 RKNGRKKVTAVHKANIMKLADGLFLNVCREVAKEYPDITFESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLV 238 (333)
T ss_pred HhcCCCeEEEEECCccchhhHHHHHHHHHHHHHHCCCCeeeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhc
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCceeEeccC-CCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCC
Q 017413 278 GGLGLTPSCNIGEGGIALAEAV-HGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLG 356 (372)
Q Consensus 278 GglGl~pSanig~~~a~FEp~H-GsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~Dlg 356 (372)
||+||+||+|+|++++||||+| ||||| ||||++|||+|+|||++|||+|||++++|++|++||.+++++|+++|+|||
T Consensus 239 GslGl~pSanig~~~a~fEp~~hGSApd-iaGk~iaNP~a~Ils~ammL~~lG~~~~a~~i~~Av~~~l~~G~~~T~DlG 317 (333)
T TIGR00175 239 GGPGLVPGANIGRDYAVFEPGVRHTGPD-IAGQNIANPTALILSSVMMLNHLGLKEHADRIQKAVLSTIAEGKNRTKDLG 317 (333)
T ss_pred CCcccCceeEEcCCCceEeccCCCCchh-hCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCccChhcC
Confidence 9999999999999999999955 99999 999999999999999999999999999999999999999999966999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 017413 357 GSSTTSDFTKAICDHL 372 (372)
Q Consensus 357 G~~~T~e~~dav~~~l 372 (372)
|++||+||+|+|+++|
T Consensus 318 G~~~T~e~~~ai~~~l 333 (333)
T TIGR00175 318 GTATTSDFTEAVIKRL 333 (333)
T ss_pred CCcCHHHHHHHHHhhC
Confidence 9999999999999986
No 9
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=3.6e-113 Score=847.08 Aligned_cols=331 Identities=32% Similarity=0.542 Sum_probs=312.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhc-----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCC
Q 017413 39 ITPITATLFPGDGIGPEIAESVKQVFRTA-----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI 113 (372)
Q Consensus 39 ~~~~~I~vi~GDGiGpEv~~~~~~vl~a~-----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~ 113 (372)
|++++|++|||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.
T Consensus 1 ~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~ 80 (352)
T TIGR02089 1 MKQYRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPA 80 (352)
T ss_pred CCceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCC
Confidence 35689999999999999999999999976 5899999999999999999999999999999999999999999995
Q ss_pred C-C---CCCcccHHHHHhhcceeeeEeccCCCCCCCcC-----CCccEEEeecCCCcccccceeeee----CCeEEEeec
Q 017413 114 G-K---GHRSLNLTLRKELNLYANVRPCYSLPGYKTRY-----DDVNLITIRENTEGEYSGLEHQVV----RGVVESLKI 180 (372)
Q Consensus 114 ~-~---~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~-----~~iDivIvREnteG~Y~g~~~~~~----~~~a~~~~~ 180 (372)
. + +.+++++.|||+||||+|+||||++||+++|+ +++|+|||||||||+|+|.+++.. ++.++++++
T Consensus 81 ~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~~~~~~~~a~~~~~ 160 (352)
T TIGR02089 81 LVPDHISLWGLLLKIRREFDQYANVRPAKLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIHRGTDEEVATQNAI 160 (352)
T ss_pred CCCCccCchhhHHHHHHHcCCeEEEEEeecCCCCCCccccccCCCCCEEEEEecCCcccccccccccCCccceeEEEeEE
Confidence 2 2 22345999999999999999999999999987 589999999999999999875533 246889999
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEE
Q 017413 181 ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLV 260 (372)
Q Consensus 181 ~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv 260 (372)
|||++++||+|+||+||++| ++|||++||+|||+.+|+||+++|+||+++||+|+++|++||++||+||++|++|||||
T Consensus 161 ~tr~~~eRi~r~Af~~A~~r-r~kVt~v~KaNvl~~t~~lf~~~~~eva~~yp~v~~~~~~vD~~~~~lv~~P~~fDViv 239 (352)
T TIGR02089 161 FTRKGVERIMRFAFELAQKR-RKHLTSATKSNGIRHSMPFWDEVFAEVAAEYPDVEWDSYHIDALAARFVLKPETFDVIV 239 (352)
T ss_pred ecHHHHHHHHHHHHHHHHHc-CCCEEEEeCCcchhhhhHHHHHHHHHHHhhCCCceEeeehHHHHHHHHhcChhhCcEEE
Confidence 99999999999999999999 88999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHHHHHhhhcCCCCcccccccCCC---ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHH
Q 017413 261 MPNLYGDIISDLCAGLIGGLGLTPSCNIGEG---GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRI 337 (372)
Q Consensus 261 ~~NlfGDIlSDlaa~l~GglGl~pSanig~~---~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i 337 (372)
|+|||||||||++++++||+||+||+|||++ ++||||+|||||| |||||+|||+|+|||++|||+|||++++|++|
T Consensus 240 t~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAPd-iAGk~iANP~a~Ils~amML~~lg~~~~A~~I 318 (352)
T TIGR02089 240 ASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAPD-IAGKGIANPIGAIWTAAMMLEHLGEKEAGAKI 318 (352)
T ss_pred ecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCchh-hcCCCccCcHHHHHHHHHHHHHcCChhHHHHH
Confidence 9999999999999999999999999999964 3899999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccCCCCCCCCCHHHHHHHHHHhC
Q 017413 338 QNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 338 ~~Av~~~l~~G~~~T~DlgG~~~T~e~~dav~~~l 372 (372)
++||.+++++| ++|+||||++||+||+|+|+++|
T Consensus 319 ~~Av~~~l~~g-~~T~DlGG~~sT~e~~~ai~~~l 352 (352)
T TIGR02089 319 MDAIERVTAAG-ILTPDVGGKATTSEVTEAVCNAL 352 (352)
T ss_pred HHHHHHHHHcC-CccCCCCCCcCHHHHHHHHHhhC
Confidence 99999999999 69999999999999999999976
No 10
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-112 Score=864.73 Aligned_cols=331 Identities=43% Similarity=0.687 Sum_probs=321.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccC-CCCcHHHHHHHHhcCeEEECcccCCCCCCCC
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQ-SFLTWESLESVRRNKVGLKGPMATPIGKGHR 118 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g-~~lp~etl~~i~~~da~L~g~~~~p~~~~~~ 118 (372)
++++|+||||||||||||+++++||++++++++|+++++|.+.++++| +++|++++++|+++|++||||+++|.+.+++
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~~~~~ 82 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQGGGYK 82 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCccCcc
Confidence 458999999999999999999999999999999999999999999987 7999999999999999999999999766788
Q ss_pred cccHHHHHhhcceeeeEeccCC-CCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHHHHHHHH
Q 017413 119 SLNLTLRKELNLYANVRPCYSL-PGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYA 197 (372)
Q Consensus 119 s~~~~LR~~ldlyanvRP~k~~-pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A 197 (372)
|+++.||++|||||||||||++ ||++++++++|+|||||||||+|+|.|++..+++++++++|||+++|||+|+||+||
T Consensus 83 s~~~~LRk~ldLYaNvRP~r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~~~~~~~~k~iTr~~~eRI~r~AFe~A 162 (482)
T PRK09222 83 SLNVTLRKTLGLYANVRPCVSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQTPDVYQCLKLISRPGSEKIIRYAFEYA 162 (482)
T ss_pred chHHHHHHHcCCeEEeeeEEecCCCCCCCCCCcCEEEEEeccCCeeccceeecCCCeeeEeeccCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999 999999999999999999999999999987788999999999999999999999999
Q ss_pred HhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhc
Q 017413 198 KTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLI 277 (372)
Q Consensus 198 ~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~ 277 (372)
++|+||+||++||+|||+.|||||+++|+||+++||+|+++|++||+++|+||++|++||||||+|||||||||++|+++
T Consensus 163 ~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~ 242 (482)
T PRK09222 163 RANGRKKVTCLTKDNIMKLTDGLFHKVFDEIAKEYPDIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEIS 242 (482)
T ss_pred HhcCCCeEEEEECCCcccccchHHHHHHHHHHhhCCCceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhc
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCCC
Q 017413 278 GGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGG 357 (372)
Q Consensus 278 GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~DlgG 357 (372)
||+||+||+|||++++||||+|||||| |||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+||||
T Consensus 243 GslGlapSanig~~~amFEpvHGSAPd-IAGk~iANP~a~IlSaamML~hlG~~~~A~~I~~Av~~tl~~G-~~T~Dl~g 320 (482)
T PRK09222 243 GSVGLAGSANIGEEYAMFEAVHGSAPD-IAGKNIANPSGLLNAAVMMLVHIGQFDIAELIENAWLKTLEDG-IHTADIYN 320 (482)
T ss_pred CCcccccceecCCCceeeECCCCCchh-hcCCCccCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcC-CCCcccCC
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999 59999955
Q ss_pred ------CCCHHHHHHHHHHhC
Q 017413 358 ------SSTTSDFTKAICDHL 372 (372)
Q Consensus 358 ------~~~T~e~~dav~~~l 372 (372)
+++|+||+|+|+++|
T Consensus 321 ~~~~~~~~~T~e~~~aVi~~l 341 (482)
T PRK09222 321 EGVSKKKVGTKEFAEAVIENL 341 (482)
T ss_pred CCCCCCCcCHHHHHHHHHHHH
Confidence 589999999999875
No 11
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=5.1e-112 Score=858.46 Aligned_cols=328 Identities=42% Similarity=0.677 Sum_probs=318.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccC-CCCcHHHHHHHHhcCeEEECcccCCCCCCCCccc
Q 017413 43 TATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQ-SFLTWESLESVRRNKVGLKGPMATPIGKGHRSLN 121 (372)
Q Consensus 43 ~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g-~~lp~etl~~i~~~da~L~g~~~~p~~~~~~s~~ 121 (372)
+|+||||||||||||+++++||++++++++|+++++|++.++++| +++|++++++|+++|++||||+++|.+.+++|++
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~~~~s~~ 81 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGGGHKSLN 81 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCccCcccHH
Confidence 699999999999999999999999999999999999999999985 8999999999999999999999999766778899
Q ss_pred HHHHHhhcceeeeEeccCC-CCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHHHHHHHHHhC
Q 017413 122 LTLRKELNLYANVRPCYSL-PGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTH 200 (372)
Q Consensus 122 ~~LR~~ldlyanvRP~k~~-pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r 200 (372)
+.|||+||||||+||||++ |+++++++++|+|||||||||+|+|.|++..+++++++++|||+++|||+|+||+||++|
T Consensus 82 ~~LRk~ldLYANvRPv~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~~~~~~~~kviTr~g~eRI~r~AFe~A~~r 161 (473)
T TIGR02924 82 VTLRKTLGLYANIRPCVSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQTPDTYECTKLITRSGSEKICRYAFEYARKH 161 (473)
T ss_pred HHHHHHcCCeEEEEEeeccCCCCCCccCCcCEEEEEeccCceecCceeeccCChheEeEecCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 999999999999999999999999999887778899999999999999999999999999
Q ss_pred CCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCC
Q 017413 201 GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGL 280 (372)
Q Consensus 201 ~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~Ggl 280 (372)
+||+||++||+|||+.|||||+++|+||+++||+|+++|++||+++|+|+++|++||||||+|||||||||++|+++||+
T Consensus 162 ~rkkVT~v~KaNVmk~tdglf~e~~~eva~eyPdI~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~Gsl 241 (473)
T TIGR02924 162 NRKKVTCLTKDNIMKMTDGIFHKIFDKIAAEYPDIESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSV 241 (473)
T ss_pred CCCeEEEEECCccccccchhHHHHHHHHHhhCCCcEEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCC----
Q 017413 281 GLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLG---- 356 (372)
Q Consensus 281 Gl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~Dlg---- 356 (372)
||+||+|||++++||||+|||||| |||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+|||
T Consensus 242 GlapSaNiG~~~amFEpvHGSAPd-IAGk~iANP~a~IlSaamML~hLG~~~~A~~I~~AV~~vl~~G-~~T~Dl~~~~~ 319 (473)
T TIGR02924 242 GLAGSANIGEEYAMFEAVHGSAPD-IAGQNIANPSGLLNAAIQMLVHIGQSDIAQLIYNAWLKTLEDG-VHTADIYNEKT 319 (473)
T ss_pred CcccceecCCCcceeecCCCchhh-hCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCcccccccc
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999 5999994
Q ss_pred --CCCCHHHHHHHHHHhC
Q 017413 357 --GSSTTSDFTKAICDHL 372 (372)
Q Consensus 357 --G~~~T~e~~dav~~~l 372 (372)
|+++|+||+|+|+++|
T Consensus 320 ~gg~~sT~e~~daVi~~l 337 (473)
T TIGR02924 320 SKQKVGTKEFAEAVTANL 337 (473)
T ss_pred CCCCcCHHHHHHHHHHHh
Confidence 6799999999999875
No 12
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=8.3e-112 Score=834.56 Aligned_cols=326 Identities=32% Similarity=0.508 Sum_probs=309.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCC-
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTA---EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK- 115 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~---~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~- 115 (372)
++++|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|..+
T Consensus 3 k~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~ 82 (344)
T PRK03437 3 KTMKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS 82 (344)
T ss_pred ceEEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC
Confidence 5689999999999999999999999977 899999999999999999999999999999999999999999999522
Q ss_pred C--CCcccHHHHHhhcceeeeEeccCCCCCCCcC---CCccEEEeecCCCcccccceeeee----CCeEEEeecccHHHH
Q 017413 116 G--HRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVV----RGVVESLKIITRQAS 186 (372)
Q Consensus 116 ~--~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~---~~iDivIvREnteG~Y~g~~~~~~----~~~a~~~~~~Tr~~~ 186 (372)
+ .++.++.|||+||||+|+||||++||+++|+ +++|++||||||||+|+|.+++.. +++++++++|||+++
T Consensus 83 ~~~~~~~~~~LRk~ldLyaNvRP~r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~~ 162 (344)
T PRK03437 83 GVLERGLLLKLRFALDHYVNLRPSKLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGALRVGTPHEVATEVSVNTAFGV 162 (344)
T ss_pred CCcccchHHHHHHHcCCeEEEEEeecCCCCCCcCCCCCCCCEEEEEECCCccccCCcccccCCCcceeEEEEEEecHHHH
Confidence 2 4677999999999999999999999999997 699999999999999999875532 346889999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcch
Q 017413 187 LRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYG 266 (372)
Q Consensus 187 eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfG 266 (372)
+||+|+||+||++|++|+||++||+|||+.||+||+++|+||+++||||++++++||++|||||++|++||||||+||||
T Consensus 163 ~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfG 242 (344)
T PRK03437 163 ERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVAAEYPDVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFG 242 (344)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHHhhCCCceEeehhHHHHHHHHhcCcccCcEEEEcccch
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhcCCCCcccccccCCC---ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 017413 267 DIISDLCAGLIGGLGLTPSCNIGEG---GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILS 343 (372)
Q Consensus 267 DIlSDlaa~l~GglGl~pSanig~~---~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~ 343 (372)
|||||++++++||+|++||+|+|++ ++||||+|||||| |||||+|||+|+|||++|||+|||++++|++|++||++
T Consensus 243 DILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAPd-iAGk~iANP~a~IlS~amML~~lg~~~~a~~I~~Av~~ 321 (344)
T PRK03437 243 DIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAPD-IAGQGIADPTAAILSVALLLDHLGEEDAAARIEAAVEA 321 (344)
T ss_pred hhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCchh-hcCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999864 3999999999999 99999999999999999999999999999999999999
Q ss_pred HHHcCCccCCCCCCCCCHHHHHHHHHHhC
Q 017413 344 TIAEGKYRTADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 344 ~l~~G~~~T~DlgG~~~T~e~~dav~~~l 372 (372)
++++| +||+++|+||+|+|+++|
T Consensus 322 ~l~~g------~gg~~~T~e~~~ai~~~l 344 (344)
T PRK03437 322 DLAER------GKMGRSTAEVGDRIAARL 344 (344)
T ss_pred HHHhc------CCCCcCHHHHHHHHHhhC
Confidence 99998 489999999999999986
No 13
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=6.9e-111 Score=839.45 Aligned_cols=329 Identities=28% Similarity=0.482 Sum_probs=308.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC-
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG- 114 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~- 114 (372)
++++|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+++|+++++.|+++|++||||+++|..
T Consensus 45 ~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~ 124 (409)
T PLN02329 45 KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWD 124 (409)
T ss_pred ceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCC
Confidence 4589999999999999999999999975 58999999999999999999999999999999999999999999952
Q ss_pred CCC-----CcccHHHHHhhcceeeeEeccCCCCCCC--cC-----CCccEEEeecCCCcccccceeee-----eCCeEEE
Q 017413 115 KGH-----RSLNLTLRKELNLYANVRPCYSLPGYKT--RY-----DDVNLITIRENTEGEYSGLEHQV-----VRGVVES 177 (372)
Q Consensus 115 ~~~-----~s~~~~LR~~ldlyanvRP~k~~pg~~~--~~-----~~iDivIvREnteG~Y~g~~~~~-----~~~~a~~ 177 (372)
.+. .++++.|||+||||+|+||||++||+++ |+ +++|+|||||||||+|+|.++.. .++++++
T Consensus 125 ~~~~~~~~e~~ll~LRk~ldLyaNvRPvr~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~~~~~~~a~~ 204 (409)
T PLN02329 125 KNEKHLRPEMALFYLRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGVS 204 (409)
T ss_pred CCcccccccccHHHHHHHcCCeEeeeeeeccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceecccCCceeEEE
Confidence 111 1469999999999999999999999875 54 68999999999999999987432 2357999
Q ss_pred eecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCcc
Q 017413 178 LKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD 257 (372)
Q Consensus 178 ~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fd 257 (372)
+++|||+++|||+|+||+||++|+ ++||++||+|||+ +++||+++|+||+++||+|++++++||+++||||+||++||
T Consensus 205 ~~~iTr~~~eRI~r~AFe~A~~r~-~kVT~v~KaNVl~-t~~lf~~~~~evA~eyPdV~~~~~~VDa~a~~LV~~P~~FD 282 (409)
T PLN02329 205 TEIYAAHEIDRIARVAFETARKRR-GKLCSVDKANVLD-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFD 282 (409)
T ss_pred eEEecHHHHHHHHHHHHHHHHHcC-CeEEEEECCCCcc-chHHHHHHHHHHHhhCCCcccchhHHHHHHHHHhcCchhCC
Confidence 999999999999999999999995 5999999999999 99999999999999999999999999999999999999999
Q ss_pred EEEcCCcchhhHHHHHhhhcCCCCcccccccCCC-ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHHHHH
Q 017413 258 VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG-GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKAD 335 (372)
Q Consensus 258 Viv~~NlfGDIlSDlaa~l~GglGl~pSanig~~-~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~~A~ 335 (372)
||||+|||||||||++++|+|||||+||+|||++ ++||||+|||||| |||||+|||+|+|||++|||+| ||++++|+
T Consensus 283 VIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~~a~FEpvHGSAPd-IAGk~iANP~A~ILS~amML~~~Lg~~~~A~ 361 (409)
T PLN02329 283 TIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPD-IAGQDKANPLATILSAAMLLKYGLGEEKAAK 361 (409)
T ss_pred EEEEcCcccccccHHHHHhcCCcccCceeecCCCCceeeeccCCCchh-hcCCcccChHHHHHHHHHHHhhhCCCHHHHH
Confidence 9999999999999999999999999999999987 6999999999999 9999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCCccCCCC---CCC-CCHHHHHHHHHHhC
Q 017413 336 RIQNAILSTIAEGKYRTADL---GGS-STTSDFTKAICDHL 372 (372)
Q Consensus 336 ~i~~Av~~~l~~G~~~T~Dl---gG~-~~T~e~~dav~~~l 372 (372)
+|++||.+++++| .+|+|| ||+ ++|+||+|+|+++|
T Consensus 362 ~I~~AV~~vl~~g-~~T~Dl~~~Gg~~~~T~e~~daIi~~l 401 (409)
T PLN02329 362 RIEDAVVDALNKG-FRTGDIYSPGNKLVGCKEMGEEVLKSV 401 (409)
T ss_pred HHHHHHHHHHHcC-CcCcccccCCCCccCHHHHHHHHHHHH
Confidence 9999999999999 589999 776 89999999999875
No 14
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=3.4e-110 Score=825.10 Aligned_cols=326 Identities=35% Similarity=0.554 Sum_probs=306.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC-CCC
Q 017413 43 TATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG-KGH 117 (372)
Q Consensus 43 ~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~-~~~ 117 (372)
+|++|||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.. ...
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5899999999999999999999976 68999999999999999999999999999999999999999999952 111
Q ss_pred -----CcccHHHHHhhcceeeeEeccCCCCCCC--cC-----CCccEEEeecCCCcccccceeeee----CCeEEEeecc
Q 017413 118 -----RSLNLTLRKELNLYANVRPCYSLPGYKT--RY-----DDVNLITIRENTEGEYSGLEHQVV----RGVVESLKII 181 (372)
Q Consensus 118 -----~s~~~~LR~~ldlyanvRP~k~~pg~~~--~~-----~~iDivIvREnteG~Y~g~~~~~~----~~~a~~~~~~ 181 (372)
.+.++.|||+||||+|+||||++||+++ |+ +++|+|||||||||+|+|.+++.. +++++++++|
T Consensus 81 ~~~~~~~~~~~LR~~ldlyanvRP~r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~~~~ 160 (349)
T TIGR00169 81 RDQRPEQGLLKLRKSLDLFANLRPAKVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGAGGEGEAWDTEVY 160 (349)
T ss_pred ccccchhhHHHHHHHcCCeEEEEEeeccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCCCCcceEEEEEEe
Confidence 1238999999999999999999999975 54 689999999999999999976332 3689999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEc
Q 017413 182 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVM 261 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~ 261 (372)
||+++|||+|+||+||++|++ +||++||+|||+ ++++|+++|+||+++||+|++++++||+++|+||++|++||||||
T Consensus 161 Tr~~~eRI~r~AF~~A~~r~~-~Vt~v~KaNvlk-t~glf~~~~~eva~~yP~I~~~~~~vDa~~~~Lv~~P~~fDViv~ 238 (349)
T TIGR00169 161 TKPEIERIARVAFEMARKRRK-KVTSVDKANVLE-SSRLWRKTVEEIAKEYPDVELEHQYIDNAAMQLVKSPTQFDVVVT 238 (349)
T ss_pred eHHHHHHHHHHHHHHHHHcCC-cEEEEECCcccc-hhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHHHhCccCceEEEE
Confidence 999999999999999999965 999999999999 899999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHhhhcCCCCcccccccCCC-ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHHHHHHHHH
Q 017413 262 PNLYGDIISDLCAGLIGGLGLTPSCNIGEG-GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQN 339 (372)
Q Consensus 262 ~NlfGDIlSDlaa~l~GglGl~pSanig~~-~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~~A~~i~~ 339 (372)
+|||||||||++++++||+|++||+|||++ ++||||+|||||| |||||+|||+|+|||++|||+| ||++++|++|++
T Consensus 239 ~NlfGDILSDlaa~l~GglGlapSanig~~~~a~FEp~HGSAPd-iAGk~iANP~a~IlS~amML~~~lg~~~~a~~i~~ 317 (349)
T TIGR00169 239 GNIFGDILSDEASVIPGSLGMLPSASLGSDGFGLFEPVHGSAPD-IAGKGIANPIAQILSAAMMLRYSFNLEEAADAIEA 317 (349)
T ss_pred cCcccchhhHHHHHhcCCCCCCceEEECCCCCEEEECCCCChhH-hcCCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999999954 8999999999999 9999999999999999999999 899999999999
Q ss_pred HHHHHHHcCCccCCCCCCCCCHHHHHHHHHHhC
Q 017413 340 AILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 340 Av~~~l~~G~~~T~DlgG~~~T~e~~dav~~~l 372 (372)
||.+++++| ++|+||||+++|+||+++|++.|
T Consensus 318 Av~~~l~~g-~~T~DlgG~~~t~e~t~av~~~~ 349 (349)
T TIGR00169 318 AVKKVLAEG-YRTPDLGSSATTEVGTAEMGEEL 349 (349)
T ss_pred HHHHHHHcC-CCccccCCCcchHHHHHHHHhcC
Confidence 999999999 59999999999999999999875
No 15
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.1e-109 Score=834.04 Aligned_cols=331 Identities=34% Similarity=0.582 Sum_probs=312.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhc---C----CCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccC
Q 017413 39 ITPITATLFPGDGIGPEIAESVKQVFRTA---E----VPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMAT 111 (372)
Q Consensus 39 ~~~~~I~vi~GDGiGpEv~~~~~~vl~a~---~----~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~ 111 (372)
.+++ |+||||||||||||+++++||+++ + ++|+|+++++|+++++++|+++|++++++|+++|++||||+++
T Consensus 22 ~~~~-I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavgt 100 (412)
T PRK06451 22 KKPI-ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLET 100 (412)
T ss_pred CCcE-EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccC
Confidence 3435 999999999999999999999964 2 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcC---CCccEEEeecCCCcccccceeee------------------
Q 017413 112 PIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQV------------------ 170 (372)
Q Consensus 112 p~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~---~~iDivIvREnteG~Y~g~~~~~------------------ 170 (372)
|.+.+++|+++.||++||||+|+||||++||+++|+ +++|||||||||||+|+|.+++.
T Consensus 101 P~~~~~~s~~l~LRk~ldLyaNvRPvk~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~~~~~~~ 180 (412)
T PRK06451 101 PIGKGWKSINVAIRLMLDLYANIRPVKYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFLRKELGV 180 (412)
T ss_pred CCCcCCcChhHHHHHHcCCeEeeceeecCCCCCCcccCcCCccEEEEEeccCCeeecccccccccccccccccccccccc
Confidence 976678899999999999999999999999999998 68999999999999999997421
Q ss_pred --eCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCCC-------------
Q 017413 171 --VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE------------- 234 (372)
Q Consensus 171 --~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp~------------- 234 (372)
...+++++++||+++++||+|+||+||++|++|+||+|||+|||+.|||+|+++|+|+++ +|||
T Consensus 181 ~~~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eypd~~~~~~~~~~~y~ 260 (412)
T PRK06451 181 EVEDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFRDYVVTEEEVTKNYN 260 (412)
T ss_pred ccccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCCcccccccchhhccc
Confidence 123577999999999999999999999999888999999999999999999999999997 8995
Q ss_pred -------ceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCccccc
Q 017413 235 -------ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIA 307 (372)
Q Consensus 235 -------I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~ia 307 (372)
|+++|++||++|||||++|++||||||+|||||||||++|+++||+||+||+|+|++++||||+|||||| ||
T Consensus 261 ~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~~alFEpvHGSAPd-iA 339 (412)
T PRK06451 261 GVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDTGGMFEAIHGTAPK-YA 339 (412)
T ss_pred cccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCCceeECCCCCccc-cC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCC----CCC-CCHHHHHHHHHHhC
Q 017413 308 GKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL----GGS-STTSDFTKAICDHL 372 (372)
Q Consensus 308 Gk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~Dl----gG~-~~T~e~~dav~~~l 372 (372)
|||+|||+|+|||++|||+|||++++|++|++||.+++++| .+|+|| ||+ ++|+||+|+|+++|
T Consensus 340 Gk~iANP~a~IlS~amML~~lg~~~~A~~I~~Av~~vl~~G-~~T~Dl~~~~gg~~~~T~e~~daI~~~l 408 (412)
T PRK06451 340 GKNVANPTGIIKGGELMLRFMGWDKAADLIDKAIMESIKQK-KVTQDLARFMGVRALSTTEYTDELISII 408 (412)
T ss_pred CCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCccccccCCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 489999 555 79999999999875
No 16
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-109 Score=817.92 Aligned_cols=327 Identities=36% Similarity=0.568 Sum_probs=309.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC--
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG-- 114 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~-- 114 (372)
+++|+||||||||||||+++++||+++ +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|..
T Consensus 2 ~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~ 81 (358)
T PRK00772 2 TYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDN 81 (358)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCC
Confidence 489999999999999999999999976 78999999999999999999999999999999999999999999951
Q ss_pred -----CCCCcccHHHHHhhcceeeeEeccCCCCCCC--cC-----CCccEEEeecCCCcccccceeeee----CCeEEEe
Q 017413 115 -----KGHRSLNLTLRKELNLYANVRPCYSLPGYKT--RY-----DDVNLITIRENTEGEYSGLEHQVV----RGVVESL 178 (372)
Q Consensus 115 -----~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~--~~-----~~iDivIvREnteG~Y~g~~~~~~----~~~a~~~ 178 (372)
.+.+| ++.|||+||||+|+||||++||+++ |+ +++|+|||||||||+|+|.+++.. +++++++
T Consensus 82 ~~~~~~~~~~-~~~LR~~ldlyanvRP~r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~ 160 (358)
T PRK00772 82 LPPDVRPERG-LLALRKELGLFANLRPAKLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGREGLGGEERAFDT 160 (358)
T ss_pred CCccCCChhh-HHHHHHHcCCeEEEeEeecCCCCCCcCCCcccccCCccEEEEecccCCeecCCcccccCCCCceeEEEE
Confidence 13455 9999999999999999999999986 65 389999999999999999986543 3478899
Q ss_pred ecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccE
Q 017413 179 KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDV 258 (372)
Q Consensus 179 ~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdV 258 (372)
++|||++++||+|+||+||++|+ ++||++||+|||+ ++++|+++|+||+++||+|++++++||+++|+||++|++|||
T Consensus 161 ~~iTr~~~~Ri~r~Af~~A~~r~-~~Vt~v~KaNvl~-~~glf~~~~~eva~eyp~i~~~~~~vDa~~~~lv~~P~~fDV 238 (358)
T PRK00772 161 MVYTREEIERIARVAFELARKRR-KKVTSVDKANVLE-SSRLWREVVTEVAKEYPDVELSHMYVDNAAMQLVRNPKQFDV 238 (358)
T ss_pred EEeeHHHHHHHHHHHHHHHHHcC-CcEEEEECccccc-cchHHHHHHHHHHhHCCCceEEEEeHHHHHHHHhhCcccCeE
Confidence 99999999999999999999994 6999999999999 899999999999999999999999999999999999999999
Q ss_pred EEcCCcchhhHHHHHhhhcCCCCcccccccCCC-ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHHHHHH
Q 017413 259 LVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG-GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADR 336 (372)
Q Consensus 259 iv~~NlfGDIlSDlaa~l~GglGl~pSanig~~-~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~~A~~ 336 (372)
|||+|||||||||++++++||+||+||+|||++ +++|||+|||||| ||||++|||+|+|||++|||+| ||++++|++
T Consensus 239 iv~~NlfGDIlSDlaa~l~GglGl~psanig~~~~a~FEp~HGSApd-iAGk~~aNP~a~Ils~ammL~~~lg~~~~a~~ 317 (358)
T PRK00772 239 IVTENLFGDILSDEAAMLTGSLGMLPSASLGESGPGLYEPIHGSAPD-IAGKGIANPIATILSAAMMLRYSLGLEEAADA 317 (358)
T ss_pred EeecCcccccccHHHHHhcCCCCCCcceEeCCCCceeeecCCCchhh-hcCCCCcCCHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999977 7999999999999 9999999999999999999999 999999999
Q ss_pred HHHHHHHHHHcCCccCCCC---CCCCCHHHHHHHHHHhC
Q 017413 337 IQNAILSTIAEGKYRTADL---GGSSTTSDFTKAICDHL 372 (372)
Q Consensus 337 i~~Av~~~l~~G~~~T~Dl---gG~~~T~e~~dav~~~l 372 (372)
|++||.+++++| ++|+|| ||+++|+||+|+|+++|
T Consensus 318 i~~Av~~~l~~g-~~T~Dl~~~gg~~~T~e~~~av~~~l 355 (358)
T PRK00772 318 IEAAVEKVLAQG-YRTADIAEGGGKVSTSEMGDAILAAL 355 (358)
T ss_pred HHHHHHHHHHcC-CcCcccccCCCCcCHHHHHHHHHHHh
Confidence 999999999999 599999 89999999999999875
No 17
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=8.2e-109 Score=828.54 Aligned_cols=330 Identities=33% Similarity=0.573 Sum_probs=310.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc---C----CCeEEEEEEeecccccccCC--CCcHHHHHHHHhcCeEEECccc
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTA---E----VPVEWEEHYVGTEIDPRTQS--FLTWESLESVRRNKVGLKGPMA 110 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~---~----~~i~~~~~~~g~~~~~~~g~--~lp~etl~~i~~~da~L~g~~~ 110 (372)
+++ |++|||||||||||+++++||+++ + ++|+|+++++|+++++++|+ ++|++++++|+++|++||||++
T Consensus 19 ~~~-I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~ 97 (409)
T PRK07006 19 NPI-IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLT 97 (409)
T ss_pred CcE-EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECccc
Confidence 435 999999999999999999999965 2 48999999999999999999 9999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcC---CCccEEEeecCCCcccccceeee-----------------
Q 017413 111 TPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQV----------------- 170 (372)
Q Consensus 111 ~p~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~---~~iDivIvREnteG~Y~g~~~~~----------------- 170 (372)
+|.+.+++|+++.||++||||+|+||||++||+++|+ +++|||||||||||+|+|.++..
T Consensus 98 tp~~~~~~s~~l~LR~~ldLyaNvRPvk~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~~ 177 (409)
T PRK07006 98 TPVGGGIRSLNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIKFLQEEMG 177 (409)
T ss_pred CCCCcCccChHHHHHHHcCCEEEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeeeccccccC
Confidence 9976667889999999999999999999999999987 68999999999999999987321
Q ss_pred ------eCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hC-----------
Q 017413 171 ------VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KY----------- 232 (372)
Q Consensus 171 ------~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eY----------- 232 (372)
....++++++|||++++||+|+||+||++|++|+||++||+|||+.|||||++|+.||++ +|
T Consensus 178 ~~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey~~~~~~~~~~~ 257 (409)
T PRK07006 178 VKKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEFGDELIDGGPWD 257 (409)
T ss_pred cccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 113467999999999999999999999999888999999999999999999998889998 78
Q ss_pred --------CCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcc
Q 017413 233 --------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAP 304 (372)
Q Consensus 233 --------p~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd 304 (372)
|+|++++++||++|||||++|++||||||+|||||||||++|+++||+||+||+|+|++++||||+||||||
T Consensus 258 ~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~~a~FEpvHGSAPd 337 (409)
T PRK07006 258 KIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDGHAIFEATHGTAPK 337 (409)
T ss_pred ccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCCceEEECCCCcchh
Confidence 899999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred cccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCC-----CCC-CCHHHHHHHHHHhC
Q 017413 305 DIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL-----GGS-STTSDFTKAICDHL 372 (372)
Q Consensus 305 ~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~Dl-----gG~-~~T~e~~dav~~~l 372 (372)
|||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+|| ||+ ++|+||+|+|+++|
T Consensus 338 -iAGk~iANP~a~IlS~amML~~lG~~~~A~~Ie~Av~~~l~~G-~~T~Dl~~~~~gg~~~~T~e~~daI~~~l 409 (409)
T PRK07006 338 -YAGLDKVNPGSVILSAEMMLRHMGWTEAADLIIKSMEKTIASK-TVTYDFARLMEGATEVKCSEFGDALIKNM 409 (409)
T ss_pred -hCCCCCcChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC-CccccccccCCCCcccCHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999 599999 445 79999999999986
No 18
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=9.1e-109 Score=807.26 Aligned_cols=321 Identities=41% Similarity=0.690 Sum_probs=310.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCCCCCcccHH
Q 017413 44 ATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLT 123 (372)
Q Consensus 44 I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~~~~s~~~~ 123 (372)
|++|||||||||||+++++||++.+++++|+++++|.++++++|+++|++++++|+++|++||||+++|...+++|+++.
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~~~~s~~~~ 80 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANPGYKSVIVT 80 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCCCccChHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999976667889999
Q ss_pred HHHhhcceeeeEeccCCCCCCCcCC-CccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHHHHHHHHHhCCC
Q 017413 124 LRKELNLYANVRPCYSLPGYKTRYD-DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202 (372)
Q Consensus 124 LR~~ldlyanvRP~k~~pg~~~~~~-~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~r 202 (372)
|||+||||+|+||||++||++++++ ++|++||||||||+|+|.++. .+++++++++|||+++|||+|+||+||++|++
T Consensus 81 LR~~ldlyanvRP~r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~-~~~~a~~~~~~tr~~~eRi~r~AF~~A~~r~~ 159 (322)
T TIGR02088 81 LRKELDLYANVRPAKSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFG-FSDRAIAIRVITREGSERIARFAFNLAKERNR 159 (322)
T ss_pred HHHHcCCEEEEEEeeccCCCCCCCCCCCCEEEEEeCcCCeeeccccc-cCcceEEEEEecHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999886 999999999999999999864 35689999999999999999999999999965
Q ss_pred CceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCc
Q 017413 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGL 282 (372)
Q Consensus 203 k~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl 282 (372)
|||++||+|||+.|||||+++|+||+++|| |+++|++||++||+||++|++||||||+|||||||||++++++||+||
T Consensus 160 -~Vt~v~KaNvl~~t~glf~~~~~eva~~yp-v~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl 237 (322)
T TIGR02088 160 -KVTCVHKANVLKGTDGLFREVCREIAKRYG-VEYRDMYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGL 237 (322)
T ss_pred -cEEEEeCCcchhhhHHHHHHHHHHHHHhCC-eeeeeeeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCC
Confidence 599999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCCCCCCHH
Q 017413 283 TPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTS 362 (372)
Q Consensus 283 ~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~DlgG~~~T~ 362 (372)
+||+|+|++++||||.|||||| |+||++|||+|+|+|++|||+|+|++++|++|++||.+++++|. +|+||||+++|+
T Consensus 238 ~pSanig~~~a~fep~hGsa~d-iaG~~~aNp~a~i~A~~~~l~~~g~~~~a~~i~~Av~~~l~~g~-~T~DlgG~~~T~ 315 (322)
T TIGR02088 238 APSANIGDRKALFEPVHGSAPD-IAGKGIANPTAAILSVAMMLDYLGELEKGKLVWEAVEYYIIEGK-KTPDLGGTAKTK 315 (322)
T ss_pred CceeEEcCCceEEecCCCChhH-hCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-CCcccCCCcCHH
Confidence 9999999999999999999999 99999999999999999999999999999999999999999995 899999999999
Q ss_pred HHHHHHH
Q 017413 363 DFTKAIC 369 (372)
Q Consensus 363 e~~dav~ 369 (372)
||+|+|+
T Consensus 316 e~~~av~ 322 (322)
T TIGR02088 316 EVGDEIA 322 (322)
T ss_pred HHHHHhC
Confidence 9999985
No 19
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=1.2e-107 Score=823.04 Aligned_cols=337 Identities=31% Similarity=0.536 Sum_probs=313.0
Q ss_pred ccccCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcC-------CCeEEEEEEeecccccccC--CCCcHHHHHHHHhcCe
Q 017413 33 RAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAE-------VPVEWEEHYVGTEIDPRTQ--SFLTWESLESVRRNKV 103 (372)
Q Consensus 33 ~~~~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~-------~~i~~~~~~~g~~~~~~~g--~~lp~etl~~i~~~da 103 (372)
+.|.+..+.+ |+||||||||||||+++++||+++. ++|+|+++++|+++++++| +++|++++++|+++|+
T Consensus 19 ~~~~~~~~~~-I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da 97 (416)
T TIGR00183 19 GKLNVPNNPI-IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRV 97 (416)
T ss_pred CccCCCCCcE-EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCE
Confidence 4443333335 9999999999999999999999652 4899999999999999999 9999999999999999
Q ss_pred EEECcccCCCCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcC---CCccEEEeecCCCcccccceeee----------
Q 017413 104 GLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQV---------- 170 (372)
Q Consensus 104 ~L~g~~~~p~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~---~~iDivIvREnteG~Y~g~~~~~---------- 170 (372)
+||||+++|.+.+++|+++.||++||||+|+||||++||+++|+ +++||+||||||||+|+|.++..
T Consensus 98 ~l~Ga~~tp~~~~~~s~~l~LR~~ldLyaNvRP~k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~ 177 (416)
T TIGR00183 98 AIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPVRYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIR 177 (416)
T ss_pred EEECcccCCCCccccCcHHHHHHHcCCEEEEeEeecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeec
Confidence 99999999976667889999999999999999999999999987 68999999999999999987320
Q ss_pred -------------eCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hC----
Q 017413 171 -------------VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KY---- 232 (372)
Q Consensus 171 -------------~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eY---- 232 (372)
.++.++++++||+++++||+|+||++|++|++++||++||+|||+.|||||+++|.||++ +|
T Consensus 178 ~~~~~~g~~~~~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey~~~~ 257 (416)
T TIGR00183 178 FLQNELGVKKIRFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEFGAEC 257 (416)
T ss_pred ccccccCccccccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHHhHhh
Confidence 124677999999999999999999999999888999999999999999999999999999 68
Q ss_pred ---------------CCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCceeEec
Q 017413 233 ---------------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 297 (372)
Q Consensus 233 ---------------p~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp 297 (372)
|+|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+|||++++||||
T Consensus 258 ~~~~lw~~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~~alFEp 337 (416)
T TIGR00183 258 ITWGLWDKYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDEIGIFEA 337 (416)
T ss_pred hhccccccccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCceEEEC
Confidence 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCC----CC-C-CCHHHHHHHHHHh
Q 017413 298 AVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL----GG-S-STTSDFTKAICDH 371 (372)
Q Consensus 298 ~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~Dl----gG-~-~~T~e~~dav~~~ 371 (372)
+|||||| |||||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+|| || . ++|+||+|+|+++
T Consensus 338 ~HGSAPd-iAGk~iANP~a~IlS~amML~~lg~~~~A~~Ie~AV~~~l~~G-~~T~Dl~~~~gg~~~~~T~e~~daI~~~ 415 (416)
T TIGR00183 338 THGTAPK-YAGQDKVNPGSIILSGEMMLEHMGWKEAADLIKKAMEKAIASK-IVTYDFARLMDGAKEVKCSEFAEAIIEN 415 (416)
T ss_pred CCCCchh-hcCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcccccccccCCCcccCHHHHHHHHHhh
Confidence 9999999 9999999999999999999999999999999999999999999 599999 55 4 7999999999998
Q ss_pred C
Q 017413 372 L 372 (372)
Q Consensus 372 l 372 (372)
|
T Consensus 416 l 416 (416)
T TIGR00183 416 M 416 (416)
T ss_pred C
Confidence 6
No 20
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=3.8e-107 Score=815.13 Aligned_cols=327 Identities=32% Similarity=0.534 Sum_probs=306.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhc---C----CCeEEEEEEeecccccccCC--CCcHHHHHHHHhcCeEEECcccCCCC
Q 017413 44 ATLFPGDGIGPEIAESVKQVFRTA---E----VPVEWEEHYVGTEIDPRTQS--FLTWESLESVRRNKVGLKGPMATPIG 114 (372)
Q Consensus 44 I~vi~GDGiGpEv~~~~~~vl~a~---~----~~i~~~~~~~g~~~~~~~g~--~lp~etl~~i~~~da~L~g~~~~p~~ 114 (372)
|++|||||||||||+++++||+++ . ++|+|.++++|+++++++|+ ++|++++++|+++|++||||+++|.+
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999999965 1 48999999999999999996 79999999999999999999999976
Q ss_pred CCCCcccHHHHHhhcceeeeEeccCCCCCCCcC---CCccEEEeecCCCcccccceeee---------------------
Q 017413 115 KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQV--------------------- 170 (372)
Q Consensus 115 ~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~---~~iDivIvREnteG~Y~g~~~~~--------------------- 170 (372)
.+++|.++.|||.||||+|+||||++||+++|+ +++|+|||||||||+|+|.+++.
T Consensus 111 ~g~~s~~l~LRk~ldLyaNvRPvr~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (474)
T PRK07362 111 GGIRSLNVALRQIFDLYSCVRPCRYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIKHLNEEVIPASP 190 (474)
T ss_pred cCccchHHHHHHHcCCceeeeEeeccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhcccccccccccccc
Confidence 677899999999999999999999999999998 58999999999999999987431
Q ss_pred -------eCCeEEEeecccHHHHHHHHHHHHHHHHhC--CCCceEEEecCcccccchHHHHHHHHHHHh-h---------
Q 017413 171 -------VRGVVESLKIITRQASLRVAEYAFHYAKTH--GRERVSAIHKANIMQKTDGLFLKCCREVAE-K--------- 231 (372)
Q Consensus 171 -------~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r--~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-e--------- 231 (372)
..+.++++++|||++++||+|+||+||++| ++++||+|||+|||++|||+|++|+.|+++ +
T Consensus 191 ~~~~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~evA~~~~~~~~v~~~ 270 (474)
T PRK07362 191 ELGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGYELATTEFRDECVTER 270 (474)
T ss_pred cccccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHHHHHHHhhhhhhhhhh
Confidence 123578999999999999999999999998 478899999999999999999999889987 4
Q ss_pred ----------CC------------------------------------------------CceeeeEeHHHHHHHHHhCC
Q 017413 232 ----------YP------------------------------------------------EITYEEVVIDNCCMMLVKNP 253 (372)
Q Consensus 232 ----------Yp------------------------------------------------~I~~~~~~vDa~~~~Lv~~P 253 (372)
|| +|.+++++||+++||||++|
T Consensus 271 ~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vDa~a~~lv~~P 350 (474)
T PRK07362 271 ESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLVDDRIADSIFQQIQTRP 350 (474)
T ss_pred hhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCcceeehHHHHHHHHHHHhCh
Confidence 44 47789999999999999999
Q ss_pred CCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHH
Q 017413 254 AAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDK 333 (372)
Q Consensus 254 ~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~ 333 (372)
++||||||+|||||||||++|+|+||+||+||+|||++.+||||+|||||| |||||+|||+|+|||++|||+|||++++
T Consensus 351 ~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~~a~FEpvHGSAPd-IAGk~iANP~A~ILS~aMML~~LG~~~~ 429 (474)
T PRK07362 351 QEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDNAAIFEATHGTAPK-HAGLDRINPGSVILSGVMMLEYLGWQEA 429 (474)
T ss_pred hhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCCceeeecCCCCchh-hcCCCCcCcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccCCCCC-------CCCCHHHHHHHHHHhC
Q 017413 334 ADRIQNAILSTIAEGKYRTADLG-------GSSTTSDFTKAICDHL 372 (372)
Q Consensus 334 A~~i~~Av~~~l~~G~~~T~Dlg-------G~~~T~e~~dav~~~l 372 (372)
|++|++||.+++++| .+|+||| |.+||+||+++|+++.
T Consensus 430 A~~I~~AV~~vl~~g-~~T~Dlg~~~~~~~~~~sT~E~~~aIi~~~ 474 (474)
T PRK07362 430 ADLITKGLSAAIANK-QVTYDLARLMEPPVDPLSCSEFAEAIISHF 474 (474)
T ss_pred HHHHHHHHHHHHHcC-CcccCCCCccccCCCCcCHHHHHHHHHhcC
Confidence 999999999999999 5899999 5789999999999863
No 21
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=3.6e-106 Score=799.73 Aligned_cols=323 Identities=47% Similarity=0.790 Sum_probs=306.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC----CCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCCCCC
Q 017413 43 TATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHR 118 (372)
Q Consensus 43 ~I~vi~GDGiGpEv~~~~~~vl~a~~----~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~~~~ 118 (372)
+|++|||||||||||+++++||+++. ++|+|+++++|.++++++|+++|+|++++|+++|++||||+++|...+.+
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~~~ 80 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPGIR 80 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSSHS
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccccc
Confidence 69999999999999999999999984 88999999999999999999999999999999999999999999855554
Q ss_pred cc--cHHHHHhhcceeeeEeccCC--CCCCCcCC-----CccEEEeecCCCcccccceeeeeCC-----eEEEeecccHH
Q 017413 119 SL--NLTLRKELNLYANVRPCYSL--PGYKTRYD-----DVNLITIRENTEGEYSGLEHQVVRG-----VVESLKIITRQ 184 (372)
Q Consensus 119 s~--~~~LR~~ldlyanvRP~k~~--pg~~~~~~-----~iDivIvREnteG~Y~g~~~~~~~~-----~a~~~~~~Tr~ 184 (372)
+. ++.||++||||+|+||||++ ++..+|++ ++||+||||||||+|+|.+++..++ +++++++|||+
T Consensus 81 ~~~~l~~lR~~ldl~anvRp~~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~~~~~~~~a~~~~~~t~~ 160 (348)
T PF00180_consen 81 SENGLLKLRKELDLYANVRPVRSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGDGGTPDEVAIDTKVITRE 160 (348)
T ss_dssp HHHHHHHHHHHTTHHEEEEEEEEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECSEEEGSSEEEEEEEEEHH
T ss_pred cHHHHHHHHHhcccceeeEEEEEeccccccccccccccCcceEEEecccccCcccCCCCceeeccCCCceEEEeeccccc
Confidence 43 48999999999999999999 56677776 5999999999999999999987665 89999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCCCceeeeEeHHHHHHHHHhCCCCccEEEcCC
Q 017413 185 ASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263 (372)
Q Consensus 185 ~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~N 263 (372)
+++||+|+||++|++|++|+||++||+|+|+.++ ||+++|+|+++ +||+|++++++||+++|+||++|++||||||+|
T Consensus 161 ~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp~I~~~~~~vD~~~~~Lv~~P~~fdViv~~N 239 (348)
T PF00180_consen 161 GIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYPDIEVEHMLVDAAAMQLVKNPEQFDVIVTPN 239 (348)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHTTSEEEEEEHHHHHHHHHHSGGGESEEEEEH
T ss_pred hhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhcceeEeeeeechhhhheeecCCcceeEEeecc
Confidence 9999999999999999999999999999999998 99999999999 999999999999999999999999999999999
Q ss_pred cchhhHHHHHhhhcCCCCcccccccC-CCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHHHHHHHHHHH
Q 017413 264 LYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAI 341 (372)
Q Consensus 264 lfGDIlSDlaa~l~GglGl~pSanig-~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~~A~~i~~Av 341 (372)
||||||||++++++||+||+||+||| +.+++|||+|||||| |+||++|||+|+|||++|||+| ||++++|++|++||
T Consensus 240 l~GDIlSDl~a~l~G~lGl~psanig~~~~a~fEp~HGSApd-iaGk~~aNP~a~Ils~a~mL~~~lg~~~~a~~i~~Av 318 (348)
T PF00180_consen 240 LFGDILSDLAAGLVGGLGLAPSANIGPDGHAMFEPVHGSAPD-IAGKGIANPIAMILSAAMMLEHSLGLPEAADAIEKAV 318 (348)
T ss_dssp HHHHHHHHHHHHHHTSGGGEEEEEEETSSEEEEEESSTTTGG-GTTSSHS-THHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhcCCChhhhhhhccCcccccccccccccccc-ccCCcccCcHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999999999999999999999999 789999999999999 9999999999999999999999 99999999999999
Q ss_pred HHHHHcCCccCCCCCCCC----CHHHHHHHH
Q 017413 342 LSTIAEGKYRTADLGGSS----TTSDFTKAI 368 (372)
Q Consensus 342 ~~~l~~G~~~T~DlgG~~----~T~e~~dav 368 (372)
.+++++| ++|+||||++ +|+||+|+|
T Consensus 319 ~~~l~~g-~~T~Dlgg~~~~~~~T~e~~daV 348 (348)
T PF00180_consen 319 EKVLEEG-IRTPDLGGSATTAVSTEEFGDAV 348 (348)
T ss_dssp HHHHHTT-EEBGGGHTTTCEEBHHHHHHHHH
T ss_pred HHHHHcC-CCCccccCCCCCCCCHHHHHhhC
Confidence 9999998 5999999999 999999997
No 22
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-103 Score=751.28 Aligned_cols=334 Identities=56% Similarity=0.883 Sum_probs=319.8
Q ss_pred cCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCC-C
Q 017413 36 SSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI-G 114 (372)
Q Consensus 36 ~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~-~ 114 (372)
+||+++++|++|||||||||++.+++.|++++++|++|+++++++. .+.++..++|.+++++++++.|||.+.+|. .
T Consensus 37 ~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~--~~~~~~~~~e~v~Si~rNkValkG~i~t~~~~ 114 (375)
T KOG0784|consen 37 AKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGS--NKESSEDLDEAVESIKRNKVALKGNIETPDLP 114 (375)
T ss_pred cccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCC--ccccchhHHHHHHHHHhcceeEeecccCCCCc
Confidence 6899999999999999999999999999999999999999999872 234455689999999999999999999995 3
Q ss_pred CCCCcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHHHHH
Q 017413 115 KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAF 194 (372)
Q Consensus 115 ~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AF 194 (372)
.+..|.|+.||++||||||+-.||++||++++++++||+||||||||+|+|.||++.||++++++++|++.++||+||||
T Consensus 115 g~~~s~n~~LR~~LDLyanvv~~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~VpGVVEsLKVvT~~kseRIaryAF 194 (375)
T KOG0784|consen 115 GGAKSLNVKLRKELDLYANVVHCKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESVPGVVESLKVVTRFKSERIARYAF 194 (375)
T ss_pred cchhhhHHHHHHhhhhhhheeeeeccCCcccccCCccEEEEecCCcccccccccccCcchhheeeeehhhhhHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHh
Q 017413 195 HYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCA 274 (372)
Q Consensus 195 e~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa 274 (372)
|||.+.||||||+|||||+||.+||||+++|+||++.||+|+++.|+||++|||||++|++|||+|+|||||+|||++|+
T Consensus 195 ~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~~Yp~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaa 274 (375)
T KOG0784|consen 195 EYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAKKYPDITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAA 274 (375)
T ss_pred HHHHHhCCceEEEEeccCceecchhhHHHHHHHHHhcCCCccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccccccCCCceeEeccC-CCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCC
Q 017413 275 GLIGGLGLTPSCNIGEGGIALAEAV-HGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTA 353 (372)
Q Consensus 275 ~l~GglGl~pSanig~~~a~FEp~H-GsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~ 353 (372)
+|+||.|+.|++|+|+++++|||.. .+..+ ++||++|||+|+|+|++|||+|||++.+|++|++||.+++.+|+++|+
T Consensus 275 GlvGG~Glv~G~n~G~~yAVFE~g~r~~~~~-~~g~~~aNPtA~llss~~MLrHL~l~~~Ad~i~~Av~~vi~egk~rT~ 353 (375)
T KOG0784|consen 275 GLVGGAGLVSGANYGDDYAVFEPGARHTGTS-IAGKNIANPTAMLLSSVDMLRHLGLPSHADRISTAVKRVIDEGKIRTK 353 (375)
T ss_pred HhcCCCCcccccccccceEEecccccccchh-hhcccccCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCccccc
Confidence 9999999999999999999999943 33356 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhC
Q 017413 354 DLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 354 DlgG~~~T~e~~dav~~~l 372 (372)
||||+.||+||+++|+++|
T Consensus 354 DlGG~~Tt~dvi~avI~~l 372 (375)
T KOG0784|consen 354 DLGGQSTTQDVIDAVIANL 372 (375)
T ss_pred ccCCCcchHHHHHHHHHHh
Confidence 9999999999999999875
No 23
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=5.7e-99 Score=752.30 Aligned_cols=330 Identities=24% Similarity=0.289 Sum_probs=302.0
Q ss_pred ccCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC
Q 017413 35 FSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG 114 (372)
Q Consensus 35 ~~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~ 114 (372)
|.|..-+.+|++||||||||||+++++.+|.+..++|+|+++++|.++++++|+++|++++++||++|++||||+++|..
T Consensus 1 ~~~~~~~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~ 80 (402)
T PRK08299 1 MAKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDE 80 (402)
T ss_pred CCccccCCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence 34455567999999999999999999999999999999999999999999999999999999999999999999999952
Q ss_pred ---------CCCCcccHHHHHhhcceeeeEec--cC----CCCCCCcCCCccEEEeecCCCcccccceeee---------
Q 017413 115 ---------KGHRSLNLTLRKELNLYANVRPC--YS----LPGYKTRYDDVNLITIRENTEGEYSGLEHQV--------- 170 (372)
Q Consensus 115 ---------~~~~s~~~~LR~~ldlyanvRP~--k~----~pg~~~~~~~iDivIvREnteG~Y~g~~~~~--------- 170 (372)
+.++|+|+.|||.||||+|+||+ |+ +||+++ +++||||||||+|+|.++..
T Consensus 81 ~~~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~-----~ivivREnTEg~Y~gi~~~~~r~~~~~~~ 155 (402)
T PRK08299 81 ARVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTK-----PIVIGRHAYGDQYRATDFKVPGKGKLTLV 155 (402)
T ss_pred ccccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCC-----CEEEEecccCCcccceeEEeccCccceee
Confidence 13679999999999999999998 77 778754 49999999999999998764
Q ss_pred ---eCCe------------EEEeec-ccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCC
Q 017413 171 ---VRGV------------VESLKI-ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYP 233 (372)
Q Consensus 171 ---~~~~------------a~~~~~-~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp 233 (372)
.+|+ ++++++ +||++++||+|+||+||++|++ +||+|||+|||+.+||||+++|+||++ +||
T Consensus 156 ~~~~~g~~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~~-kVt~v~KaNVlk~t~glf~~~~~evA~~~yp 234 (402)
T PRK08299 156 FTGEDGEPIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDRKY-PVYLSTKNTILKAYDGRFKDIFQEVYEAEFK 234 (402)
T ss_pred eecCCCccccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHcCC-CEEEECCCCcchhhhHHHHHHHHHHHHHhCc
Confidence 2221 224444 9999999999999999999964 799999999999999999999999995 999
Q ss_pred ------CceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCc--eeEeccCCCCccc
Q 017413 234 ------EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG--IALAEAVHGSAPD 305 (372)
Q Consensus 234 ------~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~--a~FEp~HGsApd~ 305 (372)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|++. +||||+||||||+
T Consensus 235 ~~~~~~~i~~~~~~vDa~~~~lv~~P~~f-Vivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~HGSAPD~ 313 (402)
T PRK08299 235 EKFEAAGITYEHRLIDDMVASALKWEGGY-VWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRH 313 (402)
T ss_pred cccccCcEEEEEeeHHHHHHHHHhCcCCc-EEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCCCCCccc
Confidence 59999999999999999999999 99999999999999999999999999999999884 8999999999993
Q ss_pred ----ccCCCC-CChhhHHHHHHHHHhhcCc-------HHHHHHHHHHHHHHHHcCCccCCCCC-------CCCCHHHHHH
Q 017413 306 ----IAGKNL-ANPTALLLSSVTMLRHLEL-------HDKADRIQNAILSTIAEGKYRTADLG-------GSSTTSDFTK 366 (372)
Q Consensus 306 ----iaGk~i-ANPia~Ils~amML~~lg~-------~~~A~~i~~Av~~~l~~G~~~T~Dlg-------G~~~T~e~~d 366 (372)
||||++ |||+|+|||++|||+|||+ .++|++|++||.+++++| .+|+||| |.+||+||+|
T Consensus 314 ~~~~IaGk~~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g-~~T~Dlg~~~g~~~g~~tT~e~~d 392 (402)
T PRK08299 314 YRQHQKGEETSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESG-FMTKDLALLVGPDQKWLTTEEFLD 392 (402)
T ss_pred ccccccCCCCccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcC-CcCccchhccCCCCCCcCHHHHHH
Confidence 889997 9999999999999999999 889999999999999999 5899995 4589999999
Q ss_pred HHHHhC
Q 017413 367 AICDHL 372 (372)
Q Consensus 367 av~~~l 372 (372)
+|+++|
T Consensus 393 aIi~~l 398 (402)
T PRK08299 393 AIDENL 398 (402)
T ss_pred HHHHHH
Confidence 999875
No 24
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1e-96 Score=737.63 Aligned_cols=330 Identities=26% Similarity=0.309 Sum_probs=303.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCC-
Q 017413 37 SDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK- 115 (372)
Q Consensus 37 ~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~- 115 (372)
|..-..++++|+|||||+|++++++++|.+..++|+|+++++|.++++++|+++|++++++|+++|++||||+++|...
T Consensus 5 ~~~~~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~~~ 84 (410)
T PLN00103 5 KIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (410)
T ss_pred cccccCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCccccc
Confidence 4445679999999999999999999999999999999999999999999999999999999999999999999999532
Q ss_pred ----C----CCcccHHHHHhhcceeeeEe--ccCCC----CCCCcC---------------------CCccEEEeecCCC
Q 017413 116 ----G----HRSLNLTLRKELNLYANVRP--CYSLP----GYKTRY---------------------DDVNLITIRENTE 160 (372)
Q Consensus 116 ----~----~~s~~~~LR~~ldlyanvRP--~k~~p----g~~~~~---------------------~~iDivIvREnte 160 (372)
+ ++|+|+.||+.||||+|+|| ||++| |+++|+ +++|+||||||||
T Consensus 85 ~~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRENTE 164 (410)
T PLN00103 85 VKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKD 164 (410)
T ss_pred ccccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecCCC
Confidence 3 67999999999999999999 99998 888875 6789999999999
Q ss_pred cccccceeeee--C-CeEEEeecc-cHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-----h
Q 017413 161 GEYSGLEHQVV--R-GVVESLKII-TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-----K 231 (372)
Q Consensus 161 G~Y~g~~~~~~--~-~~a~~~~~~-Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-----e 231 (372)
|+| +++.. + ..+++++++ |+++++||+|+||++|++|++ +||++||+|||+.+||+|+++|+||++ +
T Consensus 165 g~y---e~~~~~~~g~~~v~~~~~~T~~~~~Riar~AFe~A~~r~~-~vt~v~KaNVlk~~dglf~~~~~eva~~~~~~e 240 (410)
T PLN00103 165 EKT---ELEVYNFTGAGGVALSMYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSK 240 (410)
T ss_pred cee---EEEeeccCCCcceEEEEEcCHHHHHHHHHHHHHHHHhcCC-cEEEECCCCCchhhHHHHHHHHHHHHHhhhhhh
Confidence 999 33321 2 234567886 999999999999999999964 699999999999999999999999996 7
Q ss_pred CC--CceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCc--eeEeccCCCCccc--
Q 017413 232 YP--EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG--IALAEAVHGSAPD-- 305 (372)
Q Consensus 232 Yp--~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~--a~FEp~HGsApd~-- 305 (372)
|| +|++++++||++||+||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+||||||+
T Consensus 241 yp~~~I~~~~~lVDa~a~~lv~~P~~f-Viv~~NLfGDIlSDlaA~l~GslGlapSanig~~~~~~~FEp~HGSApd~~~ 319 (410)
T PLN00103 241 FEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 319 (410)
T ss_pred CCCCceEEEEeEHHHHHHHHhcCCCCC-EEEEcccchHHHHHHHHHhcCchhhhhccccCCCCCcEEEeCCCCcCcccch
Confidence 99 89999999999999999999999 99999999999999999999999999999999874 6999999999962
Q ss_pred ---ccCCCCCChhhHHHHHHHHHhhc-------CcHHHHHHHHHHHHHHHHcCCccCCCC-----CCC------CCHHHH
Q 017413 306 ---IAGKNLANPTALLLSSVTMLRHL-------ELHDKADRIQNAILSTIAEGKYRTADL-----GGS------STTSDF 364 (372)
Q Consensus 306 ---iaGk~iANPia~Ils~amML~~l-------g~~~~A~~i~~Av~~~l~~G~~~T~Dl-----gG~------~~T~e~ 364 (372)
|+||++|||+|+|||++|||+|| |+.++|++|++||.+++++|. +|+|| ||+ ++|+||
T Consensus 320 ~~diaGk~iANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G~-~T~Dl~~~~~gg~~~~~~~~~T~e~ 398 (410)
T PLN00103 320 VHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESGK-MTKDLALLIHGPKVSRDQYLNTEEF 398 (410)
T ss_pred hhhhcCCCccChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcCC-CCcccccccCCCcccCCCCcCHHHH
Confidence 89999999999999999999999 899999999999999999995 89999 454 899999
Q ss_pred HHHHHHhC
Q 017413 365 TKAICDHL 372 (372)
Q Consensus 365 ~dav~~~l 372 (372)
+|+|+++|
T Consensus 399 ~daV~~~l 406 (410)
T PLN00103 399 IDAVAEEL 406 (410)
T ss_pred HHHHHHHH
Confidence 99999875
No 25
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-92 Score=708.42 Aligned_cols=333 Identities=23% Similarity=0.288 Sum_probs=304.5
Q ss_pred ccCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC
Q 017413 35 FSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG 114 (372)
Q Consensus 35 ~~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~ 114 (372)
|.|...+.+++.+.||.+.+-+++-.++-|-..-++++|+++++|.+.++++|+++|++++++||++|++||||++||..
T Consensus 3 ~~~~~~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~ 82 (413)
T PTZ00435 3 GGKIKVKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDE 82 (413)
T ss_pred cccccccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCcc
Confidence 45666678999999999999999766555444568999999999999999999999999999999999999999999974
Q ss_pred C---C------CCcccHHHHHhhcceeeeEec------cCCCCCCCc-----------CCCccEEEeecCC-Ccccccc-
Q 017413 115 K---G------HRSLNLTLRKELNLYANVRPC------YSLPGYKTR-----------YDDVNLITIRENT-EGEYSGL- 166 (372)
Q Consensus 115 ~---~------~~s~~~~LR~~ldlyanvRP~------k~~pg~~~~-----------~~~iDivIvREnt-eG~Y~g~- 166 (372)
+ + ++|+|++||+.||||+|+||| +++||+++| |+++|++|+|||| ||+|++.
T Consensus 83 ~~~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~ 162 (413)
T PTZ00435 83 ARVKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPAD 162 (413)
T ss_pred ccccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCC
Confidence 2 3 689999999999999999998 567888766 6889999999999 9999998
Q ss_pred eee---------eeCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCC---
Q 017413 167 EHQ---------VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYP--- 233 (372)
Q Consensus 167 ~~~---------~~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp--- 233 (372)
+++ ..++++++. ++||++++||+|+||+||++|++ +||++||+||||.+||||+++|+||++ +||
T Consensus 163 g~~~~~~~~~~~~~~~v~~~~-~~Tr~~~eRIar~AF~~A~~r~~-~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~ 240 (413)
T PTZ00435 163 GSEPQRVDVFDFKGGGVAMGM-YNTDESIEGFARSCFQYALDRKM-PLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKF 240 (413)
T ss_pred CCcceeeeeeccCCCCeeEEE-EeCHHHHHHHHHHHHHHHHHcCC-CEEEECCCCcchhhHHHHHHHHHHHHHHhCcccc
Confidence 543 346777766 99999999999999999999965 799999999999999999999999996 799
Q ss_pred ---CceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCc--eeEeccCCCCcccc--
Q 017413 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG--IALAEAVHGSAPDI-- 306 (372)
Q Consensus 234 ---~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~--a~FEp~HGsApd~i-- 306 (372)
+|+++|++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. ++|||+|||||| |
T Consensus 241 ~~~~I~~~~~lVDa~~m~lv~~P~~f-ViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGSApd-i~~ 318 (413)
T PTZ00435 241 EKAGLWYEHRLIDDMVAQAIKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTR-HYR 318 (413)
T ss_pred ccCCEEEEEeeHHHHHHHHhhCCCCe-EEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCCccc-cch
Confidence 99999999999999999999999 99999999999999999999999999999999884 999999999999 7
Q ss_pred ---cCC-CCCChhhHHHHHHHHHhhcCc-------HHHHHHHHHHHHHHHHcCCccCCCCC----CC--------CCHHH
Q 017413 307 ---AGK-NLANPTALLLSSVTMLRHLEL-------HDKADRIQNAILSTIAEGKYRTADLG----GS--------STTSD 363 (372)
Q Consensus 307 ---aGk-~iANPia~Ils~amML~~lg~-------~~~A~~i~~Av~~~l~~G~~~T~Dlg----G~--------~~T~e 363 (372)
+|| ++|||+|+|||++|||+|||+ .++|++|++||.+++++| ++|+||| |+ ++|+|
T Consensus 319 ~~iaGk~~~ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g-~~T~Dlg~~~~G~~~~~~~~~~~T~e 397 (413)
T PTZ00435 319 QHQKGKETSTNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAG-FMTKDLAICVHGSSKVTRSDYLNTEE 397 (413)
T ss_pred hhhcCCCCccChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcC-CCccccccccCCCccccCCCCcCHHH
Confidence 896 789999999999999999995 788999999999999999 5899997 75 89999
Q ss_pred HHHHHHHhC
Q 017413 364 FTKAICDHL 372 (372)
Q Consensus 364 ~~dav~~~l 372 (372)
|+|+|+++|
T Consensus 398 ~~daV~~~L 406 (413)
T PTZ00435 398 FIDKVAEKL 406 (413)
T ss_pred HHHHHHHHH
Confidence 999999875
No 26
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=1.3e-92 Score=707.10 Aligned_cols=332 Identities=25% Similarity=0.291 Sum_probs=303.9
Q ss_pred cCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCC
Q 017413 36 SSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK 115 (372)
Q Consensus 36 ~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~ 115 (372)
||.....+++.+.||.+.+-+|...++-|-..-++++|+++++|.+.++++|+++|++++++||++|++||||++||...
T Consensus 1 ~~~~~~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~ 80 (409)
T TIGR00127 1 SKIKVANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEA 80 (409)
T ss_pred CCccccCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 34455678999999999999987554444445789999999999999999999999999999999999999999999642
Q ss_pred ---------CCCcccHHHHHhhcceeeeEe------ccCCCCCCCc-----------CCCccEEEeecCC-Cccccccee
Q 017413 116 ---------GHRSLNLTLRKELNLYANVRP------CYSLPGYKTR-----------YDDVNLITIRENT-EGEYSGLEH 168 (372)
Q Consensus 116 ---------~~~s~~~~LR~~ldlyanvRP------~k~~pg~~~~-----------~~~iDivIvREnt-eG~Y~g~~~ 168 (372)
+++|+|++||+.||||+|+|| ++++||+.+| |+++|++|+|||| ||+|+|.++
T Consensus 81 ~~~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 81 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred cccccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCC
Confidence 358999999999999999999 8999999876 7899999999999 999999986
Q ss_pred ee------e-----CCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHH-hhCC---
Q 017413 169 QV------V-----RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYP--- 233 (372)
Q Consensus 169 ~~------~-----~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva-~eYp--- 233 (372)
.. . +++++++ ++|+++++||+|+||+||++|+ ++||++||+|||+.+||+|+++|+||+ ++||
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~-~~T~~~~eRIar~AF~~A~~~~-~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~ 238 (409)
T TIGR00127 161 TQKVTLKVYDFEEGGGVAMAM-YNTDESIEGFAHSSFQLALEKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKF 238 (409)
T ss_pred CcccceeeeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHcC-CCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccc
Confidence 32 1 4678877 7999999999999999999995 579999999999999999999999997 7999
Q ss_pred ---CceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCce--eEeccCCCCcccc--
Q 017413 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDI-- 306 (372)
Q Consensus 234 ---~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a--~FEp~HGsApd~i-- 306 (372)
+|+++|++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++++ +|||+|||||| |
T Consensus 239 ~~~~I~~~~~lVDa~~m~lv~~P~~f-Viv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApd-i~~ 316 (409)
T TIGR00127 239 EALGIWYEHRLIDDMVAQALKSEGGF-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTR-HYR 316 (409)
T ss_pred cCCCEEEEEeeHHHHHHHHhhCCCCc-EEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcc-cch
Confidence 89999999999999999999999 999999999999999999999999999999998865 66999999999 8
Q ss_pred ---cCC-CCCChhhHHHHHHHHHhhcC-------cHHHHHHHHHHHHHHHHcCCccCCCC----CCC-------CCHHHH
Q 017413 307 ---AGK-NLANPTALLLSSVTMLRHLE-------LHDKADRIQNAILSTIAEGKYRTADL----GGS-------STTSDF 364 (372)
Q Consensus 307 ---aGk-~iANPia~Ils~amML~~lg-------~~~~A~~i~~Av~~~l~~G~~~T~Dl----gG~-------~~T~e~ 364 (372)
||| ++|||+|+|||++|||+|+| +.++|++|++||.+++++| ++|+|| ||+ ++|+||
T Consensus 317 ~~iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g-~~T~Dl~~~~GG~~~~~~~~~~T~e~ 395 (409)
T TIGR00127 317 MYQKGQETSTNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAG-IMTKDLALILGGSPVERSAYLNTEEF 395 (409)
T ss_pred hhhCCCCCccChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcC-CcccccccccCCCcccCCCCcCHHHH
Confidence 896 78999999999999999986 6899999999999999999 599999 888 999999
Q ss_pred HHHHHHhC
Q 017413 365 TKAICDHL 372 (372)
Q Consensus 365 ~dav~~~l 372 (372)
+|+|+++|
T Consensus 396 ~daV~~~L 403 (409)
T TIGR00127 396 IDAVEERL 403 (409)
T ss_pred HHHHHHHH
Confidence 99999875
No 27
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=4.2e-90 Score=697.44 Aligned_cols=329 Identities=25% Similarity=0.279 Sum_probs=303.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC--
Q 017413 37 SDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG-- 114 (372)
Q Consensus 37 ~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~-- 114 (372)
|..-+.+|++|+|||||+|||+.++++|....++++|+++|+|.+++++||+++|+|+++++|++|++||||++||..
T Consensus 73 ki~~~~piv~~~GDem~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~r 152 (483)
T PLN03065 73 RIKVQNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 152 (483)
T ss_pred cccccCCeEEecCCcchHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcccc
Confidence 333457899999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred -------CCCCcccHHHHHhhcceeeeEec------cCCCCCCCc-----------CCCccEEEe----------ecCCC
Q 017413 115 -------KGHRSLNLTLRKELNLYANVRPC------YSLPGYKTR-----------YDDVNLITI----------RENTE 160 (372)
Q Consensus 115 -------~~~~s~~~~LR~~ldlyanvRP~------k~~pg~~~~-----------~~~iDivIv----------REnte 160 (372)
+.|+|||++||+.||+|+|+||| +++|||..| |+++|++|+ |||||
T Consensus 153 v~e~~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte 232 (483)
T PLN03065 153 VKEFGLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGN 232 (483)
T ss_pred ccccccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCC
Confidence 34689999999999999999999 888999775 678999998 99998
Q ss_pred cccccceee----eeCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-----h
Q 017413 161 GEYSGLEHQ----VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-----K 231 (372)
Q Consensus 161 G~Y~g~~~~----~~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-----e 231 (372)
+ +.+++ ..+|+++++ ++|+++++||+|+||+||++|+ ++||++||+||||.+||+|+++|+||++ +
T Consensus 233 ~---~~e~~v~~f~~~gva~~~-~nT~~sieriAr~AF~yA~~rk-~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~ 307 (483)
T PLN03065 233 A---PVELDVYDFKGPGVALAM-YNVDESIRAFAESSMAMALQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQK 307 (483)
T ss_pred C---cceeEeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHcC-CCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhc
Confidence 6 55544 246788886 8999999999999999999985 4799999999999999999999999994 5
Q ss_pred CC--CceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCc--eeEeccCCCCccc--
Q 017413 232 YP--EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG--IALAEAVHGSAPD-- 305 (372)
Q Consensus 232 Yp--~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~--a~FEp~HGsApd~-- 305 (372)
|| +|+++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++. ++|||+|||||||
T Consensus 308 yp~~~I~~e~~lIDa~~~~lvk~P~~F-Viv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~ 386 (483)
T PLN03065 308 FEEHSIWYEHRLIDDMVAYAVKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFR 386 (483)
T ss_pred CCCCCceEEeeeHHHHHHHHHhCCCCc-EEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccc
Confidence 99 69999999999999999999999 99999999999999999999999999999999885 6999999999994
Q ss_pred --ccCCC-CCChhhHHHHHHHHHhhcCc-------HHHHHHHHHHHHHHHHcCCccCCCCC----CC-------CCHHHH
Q 017413 306 --IAGKN-LANPTALLLSSVTMLRHLEL-------HDKADRIQNAILSTIAEGKYRTADLG----GS-------STTSDF 364 (372)
Q Consensus 306 --iaGk~-iANPia~Ils~amML~~lg~-------~~~A~~i~~Av~~~l~~G~~~T~Dlg----G~-------~~T~e~ 364 (372)
|+||+ +|||+|+|+|++|||+|+|+ .++|++|++||.+++++|+ +|+||| |. ++|+||
T Consensus 387 ~~iaGk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G~-~T~DLg~~~~G~~~~~~~~~~T~ef 465 (483)
T PLN03065 387 LHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVESGK-MTKDLAILIHGPKVSREFYLNTEEF 465 (483)
T ss_pred hhccCCCCCcChHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHcCC-cccccccccCCCcccCCCCcCHHHH
Confidence 78999 59999999999999999998 6799999999999999994 899996 63 899999
Q ss_pred HHHHHHhC
Q 017413 365 TKAICDHL 372 (372)
Q Consensus 365 ~dav~~~l 372 (372)
+|+|+++|
T Consensus 466 ~daV~~~L 473 (483)
T PLN03065 466 IDAVAQTL 473 (483)
T ss_pred HHHHHHHH
Confidence 99999875
No 28
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-86 Score=618.44 Aligned_cols=329 Identities=31% Similarity=0.485 Sum_probs=301.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCC-C
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI-G 114 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~-~ 114 (372)
++|+|+++|||||||||+..+++||+++ +++|+|++.++|+++.+.+|.++|+|++++.|++|++|+|+++.|. +
T Consensus 3 ~~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~ 82 (363)
T KOG0786|consen 3 KRYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWD 82 (363)
T ss_pred CcceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccC
Confidence 5799999999999999999999999997 6899999999999999999999999999999999999999999997 3
Q ss_pred CCCC---cccHHHHHhhcceeeeEeccCCCCCC--CcC-----CCccEEEeecCCCcccccceee-eeCCeEEEeecccH
Q 017413 115 KGHR---SLNLTLRKELNLYANVRPCYSLPGYK--TRY-----DDVNLITIRENTEGEYSGLEHQ-VVRGVVESLKIITR 183 (372)
Q Consensus 115 ~~~~---s~~~~LR~~ldlyanvRP~k~~pg~~--~~~-----~~iDivIvREnteG~Y~g~~~~-~~~~~a~~~~~~Tr 183 (372)
.++. ..++.||+.|.+|||+|||..+|.+- |++ +++|++||||.|+|.|+|.... ..+++++++.+|+-
T Consensus 83 ~~~lrpe~gll~ir~~lkvfanlrp~~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~eng~gva~dte~Ya~ 162 (363)
T KOG0786|consen 83 KNHLRPEMGLLKIRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNENGEGVAFDTEIYAA 162 (363)
T ss_pred cCCcChhhhHHHHHHHHHHHhcCCcchhhHhhhccccccHHHhcCcceEEeeeecCceeecCcccCCCcceeeccccccH
Confidence 3332 34789999999999999999999762 333 6899999999999999998643 23569999999999
Q ss_pred HHHHHHHHHHHHHHHhCC-CCceEEEecCcccccchHHHHHHHHHH-HhhCCCceeeeEeHHHHHHHHHhCCCCcc-EEE
Q 017413 184 QASLRVAEYAFHYAKTHG-RERVSAIHKANIMQKTDGLFLKCCREV-AEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLV 260 (372)
Q Consensus 184 ~~~eRiar~AFe~A~~r~-rk~Vt~v~KaNvl~~tdglf~~~~~ev-a~eYp~I~~~~~~vDa~~~~Lv~~P~~fd-Viv 260 (372)
+++.||+|.||+.|++|. .-++|++||+||+. ++.|||+.+++. +.|||++++.|++||+++|+||++|.+|| +||
T Consensus 163 ~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~EyP~l~l~hqliDsAAM~Lvk~P~~lng~iv 241 (363)
T KOG0786|consen 163 HEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKSEYPDLELSHQLIDSAAMQLVKDPKQLNGTIV 241 (363)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHhhCCCcchhhhhhhHHHHHHhcCchhcCceEE
Confidence 999999999999999873 35899999999998 689999999975 55999999999999999999999999999 999
Q ss_pred cCCcchhhHHHHHhhhcCCCCcccccccC-----C-CceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHHH
Q 017413 261 MPNLYGDIISDLCAGLIGGLGLTPSCNIG-----E-GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDK 333 (372)
Q Consensus 261 ~~NlfGDIlSDlaa~l~GglGl~pSanig-----~-~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~~ 333 (372)
|.|+|||||||+++.+.||+||.||++++ + .+++|||+|||||| |+||+++||+|+|||++|||+| ||++++
T Consensus 242 T~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~~gL~EPiHGSAPD-iagk~kvNPlaTILSAamlLkygLn~pke 320 (363)
T KOG0786|consen 242 TNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESGPGLFEPIHGSAPD-IAGKDKVNPLATILSAAMLLKYGLNEPKE 320 (363)
T ss_pred eccchhhhhccccccccCccccccchhhcCCcccccCCcccccCCCCCCC-cCCCCccChHHHHHHHHHHHHhcCCChhh
Confidence 99999999999999999999999999998 2 37999999999999 9999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHcCCccCCCCCCCCCHHHHHHHHHHh
Q 017413 334 ADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDH 371 (372)
Q Consensus 334 A~~i~~Av~~~l~~G~~~T~DlgG~~~T~e~~dav~~~ 371 (372)
|++||+||.+++..| ++|.||||..+|.+.++++.+.
T Consensus 321 akaIEdAV~kvLd~G-~rTgDlgg~~st~~~~kav~EE 357 (363)
T KOG0786|consen 321 AKAIEDAVVKVLDKG-FRTGDLGGPGSTLVGCKAVGEE 357 (363)
T ss_pred HHHHHHHHHHHHhcc-ccccccCCCCcchhhHHHHHHH
Confidence 999999999999999 5999999998888877777654
No 29
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=4.1e-84 Score=630.56 Aligned_cols=330 Identities=38% Similarity=0.612 Sum_probs=312.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc-------CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCC
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI 113 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~-------~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~ 113 (372)
+..|.+|.|||||+||++++.+|++++ ..+|+|.++++|.+++++||+.+|+|++++++++.+.+|||+.||.
T Consensus 18 ~piiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPv 97 (407)
T COG0538 18 KPIIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPV 97 (407)
T ss_pred CcccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCcc
Confidence 467899999999999999999999985 3789999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCC---CccEEEeecCCCcccccceeee--------------------
Q 017413 114 GKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQV-------------------- 170 (372)
Q Consensus 114 ~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~---~iDivIvREnteG~Y~g~~~~~-------------------- 170 (372)
+.+++|+|.+||+.||||+|+|||+.+||+++|.+ .+||||+|||||+.|.|.|+..
T Consensus 98 g~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~e~~~~~ 177 (407)
T COG0538 98 GKGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLEDEMGVKK 177 (407)
T ss_pred cccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhcccccce
Confidence 99999999999999999999999999999999875 5999999999999999988642
Q ss_pred ---eCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhh--C-------------
Q 017413 171 ---VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK--Y------------- 232 (372)
Q Consensus 171 ---~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~e--Y------------- 232 (372)
+++..+.++.+++++++|++|.||+||.+++|+.||++||.|+||.|+|-|++|+.||+++ |
T Consensus 178 i~~pe~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~~~~~~~~~~~ 257 (407)
T COG0538 178 IRFPEDSGIGIKPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDEVVTGKEKFEL 257 (407)
T ss_pred EecCCCCceEEEecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccccccccchhhhc
Confidence 1244678899999999999999999999999999999999999999999999999999985 2
Q ss_pred CC----ceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccC
Q 017413 233 PE----ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAG 308 (372)
Q Consensus 233 p~----I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaG 308 (372)
.+ |.++|+++|+|.+|++++|..||||.|+||.||++||.+|+.+||+|++||+|||+.+++||++|||||+ ++|
T Consensus 258 ~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~~~~~~fEA~HGTapk-~aG 336 (407)
T COG0538 258 KGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIGDGTAEFEATHGTAPK-YAG 336 (407)
T ss_pred cCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceecCceEEEEeccCcccc-ccC
Confidence 34 9999999999999999999999999999999999999999999999999999999889999999999999 999
Q ss_pred CCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCC----C---CCCHHHHHHHHHHhC
Q 017413 309 KNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLG----G---SSTTSDFTKAICDHL 372 (372)
Q Consensus 309 k~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~Dlg----G---~~~T~e~~dav~~~l 372 (372)
|+++||+|.|||+.|||+|+||.++|+.|++|+.+++++|+ .|+||. | .++|+||+|+|+++|
T Consensus 337 ~~~~Np~a~Ils~~~ml~~~Gw~eaa~li~~a~~~ti~~~~-vT~DlArl~~~~~~~v~tsEF~d~ii~~l 406 (407)
T COG0538 337 KDSTNPIASILSGTMMLRHRGWLEAADLIEKAVEDTIESGK-VTYDLARLMGGAKRYLSTSEFADAIIENL 406 (407)
T ss_pred cCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCc-eeHHHHHhhCCCccceeHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999995 999994 4 479999999999986
No 30
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.5e-73 Score=564.30 Aligned_cols=317 Identities=19% Similarity=0.216 Sum_probs=277.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCeE-EEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCC---------C
Q 017413 45 TLFPGDGIGPEIAESVKQVFRTAEVPVE-WEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI---------G 114 (372)
Q Consensus 45 ~vi~GDGiGpEv~~~~~~vl~a~~~~i~-~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~---------~ 114 (372)
+.+.||.+.+-+|+..++-|-..-++++ |+++|+|.+++++|+++++-|+.++++++++++|+|+-||. .
T Consensus 2 v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk 81 (393)
T PLN00096 2 VYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLK 81 (393)
T ss_pred eeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchh
Confidence 4689999999999877776655677885 89999999999999999999999999999999999999996 2
Q ss_pred CCCCcccHHHHHhhcc---eeeeEeccCC-CCCCCcCCCccEEEeecCCCcccccceeee--------------------
Q 017413 115 KGHRSLNLTLRKELNL---YANVRPCYSL-PGYKTRYDDVNLITIRENTEGEYSGLEHQV-------------------- 170 (372)
Q Consensus 115 ~~~~s~~~~LR~~ldl---yanvRP~k~~-pg~~~~~~~iDivIvREnteG~Y~g~~~~~-------------------- 170 (372)
+.|+|||.+||+.||- |+....|+.+ |||..| |+|-|..-+|.|.. +...
T Consensus 82 ~~w~sPNgtiR~~l~G~tvfR~pi~~~~i~~~w~kp-----i~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~ 155 (393)
T PLN00096 82 KAWGSPNGAMRRGWNGITISRDTIHIDGVELGYKKP-----VFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIV 155 (393)
T ss_pred hhcCCCcHHHHhhcCCceEeeCCEecCCCCCCccCc-----eEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceE
Confidence 5689999999999996 8888888776 466443 55666666666643 2110
Q ss_pred ------e--CCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHH-hhC---------
Q 017413 171 ------V--RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKY--------- 232 (372)
Q Consensus 171 ------~--~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva-~eY--------- 232 (372)
. +|++ ...++|.+.++||+|+||+||++|++ +||++||+||||++++||+ +|+||+ ++|
T Consensus 156 ~~~~~f~~~~gv~-~~~~N~~~si~RiAr~AF~~A~~r~~-~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~ 232 (393)
T PLN00096 156 VDDRTITDDLNAV-VTYHNPLDNVHHLARIFFGRCLDAGI-VPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGV 232 (393)
T ss_pred EEEEecCCCCeEE-EEeccCHHHHHHHHHHHHHHHHHhCC-cEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhccc
Confidence 0 1233 23588999999999999999999965 6999999999999999998 999997 688
Q ss_pred --CCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC---c--eeEeccCCCCccc
Q 017413 233 --PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG---G--IALAEAVHGSAPD 305 (372)
Q Consensus 233 --p~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~---~--a~FEp~HGsApd~ 305 (372)
|+|+++|++||+|+||||++|++||||||+|||||||||++|+++|||||+||+|+|++ . ++|||+||||||
T Consensus 233 ~~p~V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApd- 311 (393)
T PLN00096 233 MKSGDELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTD- 311 (393)
T ss_pred CCCceEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHH-
Confidence 78999999999999999999999999999999999999999999999999999999943 3 899999999999
Q ss_pred cc-----CCC-CCChhhHHHHHHHHHhhc----Cc----HHHHHHHHHHHHHHHHcCCccCCCCCC--CCCHHHHHHHHH
Q 017413 306 IA-----GKN-LANPTALLLSSVTMLRHL----EL----HDKADRIQNAILSTIAEGKYRTADLGG--SSTTSDFTKAIC 369 (372)
Q Consensus 306 ia-----Gk~-iANPia~Ils~amML~~l----g~----~~~A~~i~~Av~~~l~~G~~~T~DlgG--~~~T~e~~dav~ 369 (372)
|+ ||+ +|||+|+|||++|||+|+ |+ .++|++|++||.+++++| .+|+||+| .++|+||+|+|+
T Consensus 312 iag~~~~Gk~~~ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G-~~T~DL~g~~~~tT~ef~daI~ 390 (393)
T PLN00096 312 MDEARLRGEETSLNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREG-RGTRDLCGAGGLTTEQFIDAVA 390 (393)
T ss_pred hhhhhhcCCCCccChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcC-CcCcCCCCCCCCCHHHHHHHHH
Confidence 99 895 999999999999999998 66 669999999999999999 59999955 789999999999
Q ss_pred HhC
Q 017413 370 DHL 372 (372)
Q Consensus 370 ~~l 372 (372)
++|
T Consensus 391 ~~L 393 (393)
T PLN00096 391 EEL 393 (393)
T ss_pred HhC
Confidence 986
No 31
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=7.6e-40 Score=311.76 Aligned_cols=334 Identities=25% Similarity=0.319 Sum_probs=280.6
Q ss_pred ccCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCC-
Q 017413 35 FSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI- 113 (372)
Q Consensus 35 ~~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~- 113 (372)
|+|..-..+|+-+.||.+.+-||+..+.-|-..-+++++.++|+|.+.+++|++.++-++.+++.++++.+|+++-||.
T Consensus 12 ~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPDE 91 (422)
T KOG1526|consen 12 MSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPDE 91 (422)
T ss_pred hceeeccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCcH
Confidence 6676667899999999999999998887666666778888899999999999999999999999999999999999996
Q ss_pred --------CCCCCcccHHHHHhhc--ceeeeEeccCCC----CCCCc-----------CCCccEEEeecCC-Ccccccce
Q 017413 114 --------GKGHRSLNLTLRKELN--LYANVRPCYSLP----GYKTR-----------YDDVNLITIRENT-EGEYSGLE 167 (372)
Q Consensus 114 --------~~~~~s~~~~LR~~ld--lyanvRP~k~~p----g~~~~-----------~~~iDivIvREnt-eG~Y~g~~ 167 (372)
.+.|+|||.+||..|+ .|+...-|+.+| ||..| |+..|+||-...+ +=.|....
T Consensus 92 aRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~d 171 (422)
T KOG1526|consen 92 ARVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSD 171 (422)
T ss_pred HHHHHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEecCC
Confidence 2468899999999999 677777777664 56443 2456666654333 11222110
Q ss_pred ------eee----eCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hC----
Q 017413 168 ------HQV----VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KY---- 232 (372)
Q Consensus 168 ------~~~----~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eY---- 232 (372)
+.. .+|++ ....+|.+.++-+|+.+|++|.+++ =.+++.+|-.++|.+||-|.++|+|+.+ +|
T Consensus 172 g~~~~~~~V~~f~~~G~~-~~m~~~dds~~~FAhssf~~Al~kk-~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kf 249 (422)
T KOG1526|consen 172 GTQKVTLKVYDFKGSGVA-AMMYNTDDSIRGFAHSSFQYALQKK-WPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKF 249 (422)
T ss_pred CCcceeEEEEecCCCcee-EEEeeccchhhHHHHHHHHHHHHhc-CceeeeccchHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 111 12343 3447788889999999999999984 5799999999999999999999999974 66
Q ss_pred --CCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCceeEe--ccCCCCccc---
Q 017413 233 --PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALA--EAVHGSAPD--- 305 (372)
Q Consensus 233 --p~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FE--p~HGsApd~--- 305 (372)
.+|+|||.+||+|..|++++-+.| ||.|.|+.||+-||+.|+-.|||||+.|..+.++.--|| ++||+...|
T Consensus 250 e~~~IwYEHRLIDDmVAqa~KS~GGf-vwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~ 328 (422)
T KOG1526|consen 250 EALGIWYEHRLIDDMVAQAMKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRM 328 (422)
T ss_pred HhhcchhhhhhHHHHHHHHHhcCCce-EEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHH
Confidence 579999999999999999999999 999999999999999999999999999999999876665 599999876
Q ss_pred -ccCCC-CCChhhHHHHHHHHHhhcC-------cHHHHHHHHHHHHHHHHcCCccCCCC----CCC------CCHHHHHH
Q 017413 306 -IAGKN-LANPTALLLSSVTMLRHLE-------LHDKADRIQNAILSTIAEGKYRTADL----GGS------STTSDFTK 366 (372)
Q Consensus 306 -iaGk~-iANPia~Ils~amML~~lg-------~~~~A~~i~~Av~~~l~~G~~~T~Dl----gG~------~~T~e~~d 366 (372)
..|+. ..||||+|++|.--|.|.| +..+++.||.|...++++|+ +|+|| +|. .+|+||.|
T Consensus 329 hqkG~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G~-MTKDLal~i~g~~~r~~y~~T~eFid 407 (422)
T KOG1526|consen 329 HQKGQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESGK-MTKDLALCIHGKVERSDYLNTEEFID 407 (422)
T ss_pred HhcCCCccCcchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcc-chHhHHHHhcCCccccccccHHHHHH
Confidence 55775 9999999999999999976 46889999999999999996 99999 343 58999999
Q ss_pred HHHHhC
Q 017413 367 AICDHL 372 (372)
Q Consensus 367 av~~~l 372 (372)
+|.++|
T Consensus 408 av~~~L 413 (422)
T KOG1526|consen 408 AVASNL 413 (422)
T ss_pred HHHHHH
Confidence 998764
No 32
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=97.36 E-value=0.0049 Score=65.04 Aligned_cols=187 Identities=17% Similarity=0.185 Sum_probs=108.3
Q ss_pred eeeeeCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhC--CCceeeeEe-HH
Q 017413 167 EHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY--PEITYEEVV-ID 243 (372)
Q Consensus 167 ~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eY--p~I~~~~~~-vD 243 (372)
+|....|-.+..+-.-..-++.+++.|..+||..|-.-|.-.|+.-. -|.-.-+-+++.-++| .++++.-|- +|
T Consensus 443 eh~Ve~GDIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA---HDa~lI~kV~~yL~~hdt~gldi~Im~P~~ 519 (735)
T PF03971_consen 443 EHEVEAGDIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA---HDAELIKKVEKYLKDHDTSGLDIRIMSPVE 519 (735)
T ss_dssp EEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH---HHHHHHHHHHHHHTTS--TT--EEEE-HHH
T ss_pred EeeecCCcchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 46666676666666567889999999999999987666666665432 2333333344444444 456666664 45
Q ss_pred HHHHHHHhCCCCccEE-EcCCcchhhHHHHHhhh-cC-CCCcccccccCCCceeEecc-CCCCccc---ccCCC--CCCh
Q 017413 244 NCCMMLVKNPAAFDVL-VMPNLYGDIISDLCAGL-IG-GLGLTPSCNIGEGGIALAEA-VHGSAPD---IAGKN--LANP 314 (372)
Q Consensus 244 a~~~~Lv~~P~~fdVi-v~~NlfGDIlSDlaa~l-~G-glGl~pSanig~~~a~FEp~-HGsApd~---iaGk~--iANP 314 (372)
++-..|-+=-..-|.| ||.|..=|+|+||.--| .| |.=|.+-.=+=...++||+. -||||.| +.-+| .=+-
T Consensus 520 A~~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~GGGLFETGAGGSAPKHVqQf~eEnhLRWDS 599 (735)
T PF03971_consen 520 ATRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFVEENHLRWDS 599 (735)
T ss_dssp HHHHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTTS-EEEES-SS---HHHHHHHCCCS-----T
T ss_pred HHHHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhcccCCceeccCCCCCccHHHHHHHHcCcccccc
Confidence 6555554445667766 99999999999998665 22 11121111111245899995 5899997 22333 6788
Q ss_pred hhHHHHHHHHHhhcCcH-------HHHHHHHHHHHHHHHcCCccCCCCC
Q 017413 315 TALLLSSVTMLRHLELH-------DKADRIQNAILSTIAEGKYRTADLG 356 (372)
Q Consensus 315 ia~Ils~amML~~lg~~-------~~A~~i~~Av~~~l~~G~~~T~Dlg 356 (372)
+|-+|+.+--|+||+.. --|+.|.+|+.+.|++++--.+-.|
T Consensus 600 LGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~ksPsRkvg 648 (735)
T PF03971_consen 600 LGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENNKSPSRKVG 648 (735)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT-S--SSTT
T ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 99999999999999853 3488999999999999864344444
No 33
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=97.03 E-value=0.01 Score=62.78 Aligned_cols=184 Identities=17% Similarity=0.179 Sum_probs=118.6
Q ss_pred eeeeeCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhC--CCceeeeEe-HH
Q 017413 167 EHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY--PEITYEEVV-ID 243 (372)
Q Consensus 167 ~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eY--p~I~~~~~~-vD 243 (372)
+|....|-.+..+---..-++.+++.|..+|+..|-.-|.-.|+.-. + |.-.-+-++..-+++ .+++++-|- ++
T Consensus 447 eh~Ve~GDIwRmcq~KD~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra--H-Da~lI~kV~~yL~~hdt~gldi~Im~p~~ 523 (741)
T TIGR00178 447 EQSVEAGDIWRMCQVKDAPIQDWVKLAVTRARATGTPAVFWLDPARA--H-DAQLIKKVETYLKDHDTEGLDIQILSPVE 523 (741)
T ss_pred EeeccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEEeCCCch--h-HHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 34444554444433345678999999999999988766666655322 1 222222223333343 456666664 45
Q ss_pred HHHHHHHhCCCCccEE-EcCCcchhhHHHHHhhhc-CC----CCcccccccCCCceeEecc-CCCCccc---cc--CCCC
Q 017413 244 NCCMMLVKNPAAFDVL-VMPNLYGDIISDLCAGLI-GG----LGLTPSCNIGEGGIALAEA-VHGSAPD---IA--GKNL 311 (372)
Q Consensus 244 a~~~~Lv~~P~~fdVi-v~~NlfGDIlSDlaa~l~-Gg----lGl~pSanig~~~a~FEp~-HGsApd~---ia--Gk~i 311 (372)
++-..|=+=-..-|.| ||.|..=|+|+||.--|= |. |.+.|=.| ..++||+. -||||.| +. |-=.
T Consensus 524 A~~~slerir~G~dTISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm~---GGGLFETGAGGSAPKHVqQf~eEnhLR 600 (741)
T TIGR00178 524 ATRFSLARIRRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---GGGLFETGAGGSAPKHVQQFLEENHLR 600 (741)
T ss_pred HHHHHHHHHHcCCCeEEEechhHHhhhcchhhhhhhccchhhhhhhhccc---CCceecCCCCCCccHHHHHHHHcCccc
Confidence 5555554445567766 999999999999986541 11 11222222 35899995 5899997 11 3336
Q ss_pred CChhhHHHHHHHHHhhcCcH-------HHHHHHHHHHHHHHHcCCccCCCCC
Q 017413 312 ANPTALLLSSVTMLRHLELH-------DKADRIQNAILSTIAEGKYRTADLG 356 (372)
Q Consensus 312 ANPia~Ils~amML~~lg~~-------~~A~~i~~Av~~~l~~G~~~T~Dlg 356 (372)
=+-+|-+|+.+--|+||+.. --|+.+++|+.+.|++++--.+-.|
T Consensus 601 WDSLGEFlALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~ksPsRkvg 652 (741)
T TIGR00178 601 WDSLGEFLALAASLEHLGNATGNPKALVLADTLDAATGKLLDNNKSPSRKVG 652 (741)
T ss_pred ccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccC
Confidence 78899999999999999853 2388999999999999863333443
No 34
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=96.18 E-value=0.06 Score=56.11 Aligned_cols=167 Identities=16% Similarity=0.115 Sum_probs=108.8
Q ss_pred EEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhC--CCceeeeE-eHHHHHHHHHhC
Q 017413 176 ESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY--PEITYEEV-VIDNCCMMLVKN 252 (372)
Q Consensus 176 ~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eY--p~I~~~~~-~vDa~~~~Lv~~ 252 (372)
+..+.....-+..+++.|.++||..|-.-|.-.+..-. .|.-...-++..-+++ .+.++.-+ .+.++-..|-+=
T Consensus 458 wR~cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~Ra---hd~~li~kV~~yLkdhdt~GldI~Ilsp~ea~~~sl~rl 534 (744)
T COG2838 458 WRMCQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPYRA---HDKELIKKVEAYLKDHDTNGLDIQILSPVEAMRYSLERL 534 (744)
T ss_pred HHHHhcccchHHHHHHHHHHHHhhcCCceEEEeCcCcc---chHHHHHHHHHHhhhcCCCCcceEEecHHHHHHHHHHHH
Confidence 33445566789999999999999887655554443221 2332233333333332 33444434 356665555555
Q ss_pred CCCccEE-EcCCcchhhHHHHHhhhcCCCCcccccc---c---CCCceeEecc-CCCCccc---ccCCC--CCChhhHHH
Q 017413 253 PAAFDVL-VMPNLYGDIISDLCAGLIGGLGLTPSCN---I---GEGGIALAEA-VHGSAPD---IAGKN--LANPTALLL 319 (372)
Q Consensus 253 P~~fdVi-v~~NlfGDIlSDlaa~l~GglGl~pSan---i---g~~~a~FEp~-HGsApd~---iaGk~--iANPia~Il 319 (372)
-..-|+| ||.|..-|+|+||.--|- |..|+- | =...+|||+. .||||.| +.-.| .=+-+|-+|
T Consensus 535 ~~G~DtIsvTGNvLRDYlTDLFPIlE----LGTSAKMLSiVPlmaGGgmfETGAGGSAPKhVqQ~~eENhLRWDSLGEFL 610 (744)
T COG2838 535 RRGEDTISVTGNVLRDYLTDLFPILE----LGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQLVEENHLRWDSLGEFL 610 (744)
T ss_pred HcCCceeEecchHHHHHHhhhhhHhh----cccccchheeeeeccCCceeecCCCCCCcHHHHHHHHhcccchhhHHHHH
Confidence 5667766 999999999999986542 222221 1 1245899995 5899997 22333 567889999
Q ss_pred HHHHHHhhcCcH-------HHHHHHHHHHHHHHHcCC
Q 017413 320 SSVTMLRHLELH-------DKADRIQNAILSTIAEGK 349 (372)
Q Consensus 320 s~amML~~lg~~-------~~A~~i~~Av~~~l~~G~ 349 (372)
+.+.-|||+|.. --|+.++.|..+.|.+.|
T Consensus 611 ALa~sle~~~~k~gn~kAkvLa~~LD~AtgklLdn~K 647 (744)
T COG2838 611 ALAASLEHLGNKTGNAKAKVLAKALDAATGKLLDNNK 647 (744)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999998853 347888899999888765
No 35
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=94.10 E-value=0.034 Score=54.90 Aligned_cols=134 Identities=22% Similarity=0.242 Sum_probs=72.5
Q ss_pred cccHHHHHHHHHHHHHHHHh-CC--CCceEEEecCcccccchHHHH-H----HHHHHHh-hCCCceeee-EeHHHHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKT-HG--RERVSAIHKANIMQKTDGLFL-K----CCREVAE-KYPEITYEE-VVIDNCCMML 249 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~-r~--rk~Vt~v~KaNvl~~tdglf~-~----~~~eva~-eYp~I~~~~-~~vDa~~~~L 249 (372)
.+|++.+.+.++...+.-++ -| +.|+- |-=-|==.--.|+|= | +.-.+.+ .-.++.+.- .--|++..+-
T Consensus 151 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIa-V~gLNPHaGe~G~~G~EE~~~I~PAI~~~~~~gi~v~GP~paDt~F~~~ 229 (298)
T PF04166_consen 151 LITKERILEKIRLLHKSLKRDFGIENPRIA-VAGLNPHAGEGGLFGREEIEIIIPAIEEARAEGIDVFGPYPADTVFGKA 229 (298)
T ss_dssp H--HHHHHHHHHHHHHHHHHTTT-SS-EEE-EE-SSGGGGTTTTTBSHHHHTHHHHHHHHHHTTHEEEEEE-HHHHTSHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCCCCCCcHhHHHHHHHHHHHHHhCCCceECCCccHHhhhcc
Confidence 56888888888887766655 22 22332 211221111134443 1 2222222 235676653 4457665444
Q ss_pred HhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHH
Q 017413 250 VKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVT 323 (372)
Q Consensus 250 v~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~am 323 (372)
.-.+||++|+. | -|++--=.--++.--+.|+--. .----|.||||.| |||||+|||.+|+.|.-+
T Consensus 230 --~~~~fD~vvaM--Y----HDQGlip~K~l~f~~gVnvTlGLP~iRTS~DHGTAfD-IAGkg~A~~~s~~~Ai~~ 296 (298)
T PF04166_consen 230 --NRGKFDAVVAM--Y----HDQGLIPFKLLGFDEGVNVTLGLPIIRTSPDHGTAFD-IAGKGIADPSSMIEAIKL 296 (298)
T ss_dssp --HHTT-SEEEES--S----HHHHHHHHHHHCTTTSEEEEESSSSEEEEESS-S-CC-GTTTTTS-THHHHHHHHH
T ss_pred --hhccCCEEEEe--e----cccCccceeecccccceEEecCCCeeeecCCCCchhh-hhCCCCCChHHHHHHHHH
Confidence 34789999873 3 4454444444455556776433 3345689999999 999999999999988765
No 36
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=93.13 E-value=0.065 Score=53.58 Aligned_cols=136 Identities=20% Similarity=0.155 Sum_probs=78.7
Q ss_pred cccHHHHHHHHHHHHHHHHhCCC--Cce-EEEecCcccccchHHH-HHHHHHHH---hh--CCCceee-eEeHHHHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKTHGR--ERV-SAIHKANIMQKTDGLF-LKCCREVA---EK--YPEITYE-EVVIDNCCMML 249 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~r~r--k~V-t~v~KaNvl~~tdglf-~~~~~eva---~e--Yp~I~~~-~~~vDa~~~~L 249 (372)
.+|.+.+.+.++...+.-++-|. .|+ .+.-.-+.-. .|+| +|-.+.+. ++ -.+++++ ..--|.+..+-
T Consensus 177 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAi~~~~~~G~~v~GP~paDt~F~~~ 254 (326)
T PRK03371 177 TLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGE--NGLFGDEEIRIVTPAIEAMRAKGMDVYGPCPPDTVFLQA 254 (326)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHCCCcccCCCCchhhcccc
Confidence 56888888888887775553332 232 2222233222 3666 33333221 11 1233332 34456655444
Q ss_pred HhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHh
Q 017413 250 VKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR 326 (372)
Q Consensus 250 v~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~ 326 (372)
.+ .+||++|+. | -|++--=.-.+++-.+.|+--. .----|-||||.| |||||+|||.+|+-|.-+..+
T Consensus 255 ~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-IAGkG~A~~~S~~~Ai~lA~~ 324 (326)
T PRK03371 255 YE--GQYDMVVAM--Y----HDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFD-IAWTGKAKSESMAVSIKLAMQ 324 (326)
T ss_pred cc--cCCCEEEEc--c----ccccchhheecccccceEEecCCCeeEecCCCCchhh-hhcCCcCCHHHHHHHHHHHHH
Confidence 33 579988863 3 3344333445555556676543 2234578999999 999999999999988776543
No 37
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=93.00 E-value=0.067 Score=53.62 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=78.5
Q ss_pred cccHHHHHHHHHHHHHHHHhCCC--CceE-EEecCcccccchHHH-HHHHHHH----Hh-hCCCceee-eEeHHHHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKTHGR--ERVS-AIHKANIMQKTDGLF-LKCCREV----AE-KYPEITYE-EVVIDNCCMML 249 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~r~r--k~Vt-~v~KaNvl~~tdglf-~~~~~ev----a~-eYp~I~~~-~~~vDa~~~~L 249 (372)
.+|++.+.+.+|...+.-++.|. .|+- +.-.-+.- -.|+| +|-.+.+ .+ .-.+++++ ..--|.+..+-
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAG--E~G~~G~EE~~iI~PAI~~~~~~G~~v~GP~paDt~F~~~ 255 (332)
T PRK00232 178 AITPERLEEVIRILHADLRRKGIAEPRIAVCGLNPHAG--EGGHFGREEIDIIIPALEELRAEGINLVGPLPADTLFQPA 255 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeeCCCCC--CCCCCCHHHHHHHHHHHHHHHhCCCCcCCCCCchhhcccc
Confidence 56888898888888876663332 2332 22222221 13555 3222221 11 11233332 34456665554
Q ss_pred HhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHh
Q 017413 250 VKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR 326 (372)
Q Consensus 250 v~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~ 326 (372)
.+ .+||++|+. | -|++--=+--+++-.+.|+--. .----|-||||.| |||||+|||.+++-|.-+..+
T Consensus 256 ~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfD-IAGkg~A~~~S~~~Ai~lA~~ 325 (332)
T PRK00232 256 YL--GDADAVLAM--Y----HDQGLPVLKYLGFGRGVNITLGLPFIRTSVDHGTALD-LAGKGIADVGSFITALNLAIR 325 (332)
T ss_pred cc--CCCCEEEEC--c----ccccchhheecccCcceEEecCCCeeEeCCCCcchhh-hhcCCCCCHHHHHHHHHHHHH
Confidence 43 579988863 3 2343333444555556776543 2234578999999 999999999999998877554
No 38
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=92.77 E-value=0.075 Score=53.31 Aligned_cols=137 Identities=16% Similarity=0.153 Sum_probs=81.3
Q ss_pred cccHHHHHHHHHHHHHHHHhCCC--Cce-EEEecCcccccchHHH-HHHHHHH----Hh-hCCCceee-eEeHHHHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKTHGR--ERV-SAIHKANIMQKTDGLF-LKCCREV----AE-KYPEITYE-EVVIDNCCMML 249 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~r~r--k~V-t~v~KaNvl~~tdglf-~~~~~ev----a~-eYp~I~~~-~~~vDa~~~~L 249 (372)
.+|.+.+.+.++.+.+.-++-+. .|+ .+.-.-+.-. .|+| +|-.+.+ .+ .-.+++++ .+-.|.+..+-
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~g~~v~GP~paDt~F~~~ 255 (332)
T PRK03743 178 YVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSGE--HGLFGDEEVDEIIPAVEAAQEMGINVEGPVPADSVFHLA 255 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHCCCcccCCCCchhhcccc
Confidence 56899999988888886664332 233 2333333321 3566 3322221 11 12344443 34556665554
Q ss_pred HhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh
Q 017413 250 VKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH 327 (372)
Q Consensus 250 v~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~ 327 (372)
.+ .+||++|+. | -|++--=.--++.-.+.|+--. .----|-||||.| |||||+|||.+++-|.-+..+.
T Consensus 256 ~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-IAGkg~A~~~S~~~Ai~lA~~~ 326 (332)
T PRK03743 256 LQ--GRYDAVLSL--Y----HDQGHIATKTLDFERTIAITNGLPFLRTSVDHGTAFD-IAGTGKASSVSMEEAILLAAKY 326 (332)
T ss_pred cc--cCCCEEEEc--c----cccCChhheecccCCceEEecCCCeeEeCCCCcchhh-hhcCCCCCHHHHHHHHHHHHHH
Confidence 44 579988873 3 3444333444555556676543 2234578999999 9999999999999988775543
No 39
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=92.60 E-value=0.078 Score=52.82 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=42.2
Q ss_pred ccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHHHH
Q 017413 256 FDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTML 325 (372)
Q Consensus 256 fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~amML 325 (372)
+|.+|| ||= |++---.-=+|+--|.|+.-+ .----|-||||.| |||||||||.+++-|..+.-
T Consensus 259 ~Davla--MYH----DQgliplK~l~Fd~~VNvtlGLPfiRTS~DHGTAfD-iAgkGiA~~~S~~~Ai~lA~ 323 (332)
T COG1995 259 YDAVLA--MYH----DQGLIPLKYLGFDRGVNVTLGLPFIRTSVDHGTAFD-IAGKGIADPGSLIAAIKLAA 323 (332)
T ss_pred CCEEEE--eec----cccchhhhhhccccceEEecCCCeeeecCCccchhh-hhcCCcCCchHHHHHHHHHH
Confidence 476665 332 333333333455557777544 2344578999999 99999999999998877643
No 40
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=92.52 E-value=0.086 Score=52.81 Aligned_cols=137 Identities=12% Similarity=0.074 Sum_probs=81.8
Q ss_pred cccHHHHHHHHHHHHHHHHh-CC--CCce-EEEecCcccccchHHH-HHHHHHHH----h-hCCCceee-eEeHHHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKT-HG--RERV-SAIHKANIMQKTDGLF-LKCCREVA----E-KYPEITYE-EVVIDNCCMM 248 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~-r~--rk~V-t~v~KaNvl~~tdglf-~~~~~eva----~-eYp~I~~~-~~~vDa~~~~ 248 (372)
.+|.+.+.+.++...+.-++ -| +.|+ .+.-.-+.-. .|+| +|-.+.+. + .-.++.++ .+--|++..+
T Consensus 173 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAi~~~~~~Gi~v~GP~paDt~F~~ 250 (329)
T PRK01909 173 ALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGE--NGYLGREEIDVIEPALARARAAGIDARGPYPADTLFQP 250 (329)
T ss_pred HhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHCCCCccCCCCchhhccc
Confidence 56899999999998886663 22 2233 2222233221 3566 33332221 1 11234332 4555776665
Q ss_pred HHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHh
Q 017413 249 LVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR 326 (372)
Q Consensus 249 Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~ 326 (372)
-.+ .+||++|+. | -|++--=.--+++-.+.|+--. .----|-||||.| |||||+|||.+|+-|.-+..+
T Consensus 251 ~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-IAGkg~A~~~S~~~Ai~lA~~ 321 (329)
T PRK01909 251 RYL--EDADCVLAM--F----HDQGLPVLKYATFGEGINVTLGLPIIRTSVDHGTALD-LAGTGRADPGSMIAAIDTAVT 321 (329)
T ss_pred ccc--cCCCEEEEc--c----ccccchhheecccCcceEEecCCCeeEeCCCCcchhh-hhcCCCCCHHHHHHHHHHHHH
Confidence 544 479988863 3 3444444445555556776543 2234578999999 999999999999988876544
Q ss_pred h
Q 017413 327 H 327 (372)
Q Consensus 327 ~ 327 (372)
.
T Consensus 322 ~ 322 (329)
T PRK01909 322 M 322 (329)
T ss_pred H
Confidence 3
No 41
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=92.36 E-value=0.09 Score=52.93 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=82.4
Q ss_pred cccHHHHHHHHHHHHHHHHh-CC--CCceE-EEecCcccccchHHH-HH-------HHHHHHhhCCCceee-eEeHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKT-HG--RERVS-AIHKANIMQKTDGLF-LK-------CCREVAEKYPEITYE-EVVIDNCC 246 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~-r~--rk~Vt-~v~KaNvl~~tdglf-~~-------~~~eva~eYp~I~~~-~~~vDa~~ 246 (372)
.+|.+.+.+-++.+.+.-++ -| +.|+- +.-.-+.-. .|+| +| ..++..++.+++.+. ..--|.+.
T Consensus 180 ~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAIe~~r~~g~g~~v~GP~paDt~F 257 (345)
T PRK02746 180 TLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGE--QGQLGTEEKDWLIPWLESWRQKNPDIQLLGPIPPDTCW 257 (345)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCceeeCCCCchhhc
Confidence 56888888888877765552 22 23332 222222221 3455 22 233333343345554 35568877
Q ss_pred HHHHhC-C-----CCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHH
Q 017413 247 MMLVKN-P-----AAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALL 318 (372)
Q Consensus 247 ~~Lv~~-P-----~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~I 318 (372)
.+-.+. + .+||++|+. | -|++--=.--+++-.+.|+--. .----|-||||.| ||||++|||.+|+
T Consensus 258 ~~~~~~~~~~~~~~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-IAGkg~A~~~S~~ 330 (345)
T PRK02746 258 VSPAQAWYGKGVAEAPDGYLAL--Y----HDQGLIPVKLMAFDRAVNTTIGLPFIRTSPDHGTAFD-IAGKGIARPQSMK 330 (345)
T ss_pred cccccccccccccCCCCEEEEC--c----ccCCChhheeeccCcceEEecCCCeeEeCCCCcchhh-hhcCCCCCHHHHH
Confidence 766552 2 579999974 3 3344434444555557776543 2234578999999 9999999999999
Q ss_pred HHHHHHHh
Q 017413 319 LSSVTMLR 326 (372)
Q Consensus 319 ls~amML~ 326 (372)
-|.-+..+
T Consensus 331 ~Ai~lA~~ 338 (345)
T PRK02746 331 AAIKLAWE 338 (345)
T ss_pred HHHHHHHH
Confidence 98877544
No 42
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=92.36 E-value=0.092 Score=52.74 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=78.7
Q ss_pred cccHHHHHHHHHHHHHHHHh-CCC--CceE-EEecCcccccchHHH-HHHHH-------HHHhhCCCceee-eEeHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKT-HGR--ERVS-AIHKANIMQKTDGLF-LKCCR-------EVAEKYPEITYE-EVVIDNCC 246 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~-r~r--k~Vt-~v~KaNvl~~tdglf-~~~~~-------eva~eYp~I~~~-~~~vDa~~ 246 (372)
.+|.+.+.+.++.+.+.-++ -|. .|+- +.-.-+.-. .|+| +|-.+ +..++ ++.++ .+--|.+.
T Consensus 182 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~--Gi~v~GP~paDt~F 257 (336)
T PRK05312 182 ALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAGE--GGALGREDIDIIAPAIEQLRAE--GIDARGPLPADTMF 257 (336)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCCccCCCCchhhc
Confidence 56899999999888886663 232 2332 222223221 3566 33222 22222 33332 34456665
Q ss_pred HHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHHH
Q 017413 247 MMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTM 324 (372)
Q Consensus 247 ~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~amM 324 (372)
.+-.. .+||++|+. | -|++--=.-.++.-.+.|+--. .----|-||||.| |||||+|||.+++-|.-+.
T Consensus 258 ~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-IAGkg~A~~~S~~~Ai~lA 328 (336)
T PRK05312 258 HAAAR--ATYDAAICM--Y----HDQALIPIKTLDFDGGVNVTLGLPFIRTSPDHGTAFD-IAGKGIARPDSLIAALRLA 328 (336)
T ss_pred ccccc--cCCCEEEEc--c----cccCChhheecccCcceEEecCCCeeEeCCCCcchhh-hhcCCCCCHHHHHHHHHHH
Confidence 54322 579988863 3 3343333444455556666543 2234478999999 9999999999999988775
Q ss_pred Hhh
Q 017413 325 LRH 327 (372)
Q Consensus 325 L~~ 327 (372)
.+.
T Consensus 329 ~~~ 331 (336)
T PRK05312 329 AQM 331 (336)
T ss_pred HHH
Confidence 543
No 43
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=92.32 E-value=0.095 Score=52.33 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=77.8
Q ss_pred cccHHHHHHHHHHHHHHHHh-CC--CCce-EEEecCcccccchHHH-HHHHHH----HHh-hCCCceee-eEeHHHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKT-HG--RERV-SAIHKANIMQKTDGLF-LKCCRE----VAE-KYPEITYE-EVVIDNCCMM 248 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~-r~--rk~V-t~v~KaNvl~~tdglf-~~~~~e----va~-eYp~I~~~-~~~vDa~~~~ 248 (372)
.+|.+.+.+-++...+.-++ -| +.|+ .+.-.-+.-. .|+| +|-.+. +.+ .-.++.++ ..--|.+..+
T Consensus 170 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~G~~v~GP~paDt~F~~ 247 (320)
T TIGR00557 170 ALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGE--GGHLGREEIDIIIPALEALRAEGIDLIGPLPADTLFHP 247 (320)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCC--CCCCcHHHHHHHHHHHHHHHHCCCcccCCCCchhhccc
Confidence 46899999888888877763 22 2343 2333333221 3555 222221 211 11233332 3444665544
Q ss_pred HHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHh
Q 017413 249 LVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR 326 (372)
Q Consensus 249 Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~ 326 (372)
-.+ .+||++|+. | -|++--=.-.++.-.+.|+--. .----|.||||.| ||||++|||.+++-|.-+..+
T Consensus 248 ~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfD-IAGkg~A~~~S~~~Ai~~A~~ 318 (320)
T TIGR00557 248 AAL--AKYDAVLAM--Y----HDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAFD-IAGKGKADPGSLIAAIKLAIE 318 (320)
T ss_pred ccc--cCCCEEEEC--c----ccccchhheecccCcceEEecCCCeeEeCCCCcchhh-hhcCCCCCHHHHHHHHHHHHH
Confidence 322 579988863 3 3344333444555556666443 2234578999999 999999999999988776443
No 44
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=92.10 E-value=0.1 Score=51.72 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=76.8
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCce-EEEecCcccccchHHH-HH------HHHHHHhhCCCceee--eEeHHHHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKTHGRERV-SAIHKANIMQKTDGLF-LK------CCREVAEKYPEITYE--EVVIDNCCMML 249 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~r~rk~V-t~v~KaNvl~~tdglf-~~------~~~eva~eYp~I~~~--~~~vDa~~~~L 249 (372)
.+|.+.+.+-++...+.-+ . .|+ .+.-.-+.-. .|+| +| ..++..+. .+++++ ..--|++..+-
T Consensus 158 ~it~~~i~~~i~~~~~~l~-~--PrIaV~gLNPHAGE--~G~~G~EE~iI~PAi~~~~~~-~g~~~~~GP~paDt~F~~~ 231 (307)
T PRK03946 158 LIKVKKLVKFLLDFYKSTK-F--KKIGVLGLNPHAGD--NGVIGGEEEEIKKAIKKANQF-LGFEIFFGPLVPDSAFTPN 231 (307)
T ss_pred HhCHHHHHHHHHHHHHHhc-C--CCEEEEeeCCCCCC--CCCCCcchHHHHHHHHHHHHh-cCCCcccCCcCchhhcccc
Confidence 5688888887777666433 3 333 2222222211 2444 22 22222211 245554 56667776654
Q ss_pred HhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCC-CCChhhHHHHHHHHHh
Q 017413 250 VKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKN-LANPTALLLSSVTMLR 326 (372)
Q Consensus 250 v~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~-iANPia~Ils~amML~ 326 (372)
.+ .+||++|+. | -|++--=+-.+++-.+.|+--. .----|.||||.| ||||+ +|||.+|+-|.-+..+
T Consensus 232 ~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVnvTlGLP~iRTSpDHGTAfD-IAGkg~~A~~~S~~~Ai~lA~~ 302 (307)
T PRK03946 232 KR--KKFNYYVAM--Y----HDQGLAPLKALYFDESINVSLNLPILRTSVDHGTAFD-IAYKNAKANTKSYLNAIKYAIN 302 (307)
T ss_pred cc--cCCCEEEEC--c----cccCchhheeeccCcceEEecCCCEeEecCCCCchhh-hcCCCCcCCHHHHHHHHHHHHH
Confidence 33 689999874 3 2343333444455556666433 2234578999999 99999 9999999988876544
No 45
>PRK07742 phosphate butyryltransferase; Validated
Probab=79.90 E-value=65 Score=31.74 Aligned_cols=242 Identities=14% Similarity=0.159 Sum_probs=123.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccc-----cccCC-----------CCcHH----HHH
Q 017413 37 SDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEID-----PRTQS-----------FLTWE----SLE 96 (372)
Q Consensus 37 ~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~-----~~~g~-----------~lp~e----tl~ 96 (372)
+...+.||++-.|+ -+++++++.+.++.- . ++ .+.+|.+.. ++.|- .-+++ .++
T Consensus 11 ~~~~~~ri~~~~~~--d~~vl~Aa~~a~~e~-~-~~--~iLvG~~~~I~~~~~~~~l~~~~~~~Ii~~~~~~~s~~~a~~ 84 (299)
T PRK07742 11 AGQPKKTVAVAVAE--DEEVIEAVAKAIELQ-L-AR--FRLYGNQEKIMGMLQEHGLQTSEHIEIIHAQSSAEAAELAVK 84 (299)
T ss_pred hcCCCCeEEEeCCC--CHHHHHHHHHHHHcC-C-ce--EEEECCHHHHHHHHHHCCCCCCCCcEEECCCCHHHHHHHHHH
Confidence 33445678777765 578888888776653 1 22 344554321 11110 00122 245
Q ss_pred HHH--hcCeEEECcccCCCCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCe
Q 017413 97 SVR--RNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGV 174 (372)
Q Consensus 97 ~i~--~~da~L~g~~~~p~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~ 174 (372)
.++ ++|+.++|..++ ...+|..|+....+++...+..+ =++.+ ....|.+. .-+.
T Consensus 85 lV~~G~aD~lvsG~~tt---------a~~~~~~l~~~~Gi~~~~~~s~v-------~~~~~-P~~~~~~~------l~D~ 141 (299)
T PRK07742 85 AVRNGEADVLMKGNVPT---------ANILKAVLNKEWGLRKGSVLSHV-------AVFEV-PNYDRLIF------VTDA 141 (299)
T ss_pred HHHCCCCCEEEECCcCH---------HHHHHHHhccccCCCCCCcccce-------ehhhe-ecCCCcEE------EEec
Confidence 555 789999988754 12446666644444443332211 00000 00011110 0111
Q ss_pred EEEeecccHHHHHHHHHHHHHHHHhCCC--CceEEEecCcccccchHHHHHHHHHHHh-----hCCCceee-eEeHHHHH
Q 017413 175 VESLKIITRQASLRVAEYAFHYAKTHGR--ERVSAIHKANIMQKTDGLFLKCCREVAE-----KYPEITYE-EVVIDNCC 246 (372)
Q Consensus 175 a~~~~~~Tr~~~eRiar~AFe~A~~r~r--k~Vt~v~KaNvl~~tdglf~~~~~eva~-----eYp~I~~~-~~~vDa~~ 246 (372)
+..+ --|-+.-..|+..|.++|+.-|. .||-+..=.+.-......-++.. ++++ ++|+..++ ++..|++.
T Consensus 142 g~n~-~p~~e~l~~ia~~a~~~a~~lGie~PkVAlLs~gee~~k~~~~~~eA~-~l~~~~~~~~~~~~~vdG~l~~D~A~ 219 (299)
T PRK07742 142 AMNI-APDLEQKAAIIQNAVEVARAIGIDLPKVAPLAAVEVVNPAMQATIDAA-ALTQMNRRGQIKNCVVDGPLALDNAV 219 (299)
T ss_pred eecC-CcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEecccCCCCCCHHHHHHH-HHHHHHhhCCCCCeEEeechHHHHhc
Confidence 1111 12567777888889999987654 46666543322212223333332 2222 46998887 56667764
Q ss_pred HH-H--HhCC-----CCccEEEcCCc-chhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCChhh
Q 017413 247 MM-L--VKNP-----AAFDVLVMPNL-YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTA 316 (372)
Q Consensus 247 ~~-L--v~~P-----~~fdViv~~Nl-fGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia 316 (372)
-. . .+-| ++-||+|.||+ -|||+.-+..-+.|+ . ..+.-+|.. -|+|=+... -.-+++.|-+|
T Consensus 220 ~~~~a~~k~~~s~v~G~Anvli~Pnl~agNi~~K~l~~~~~~-~-~g~il~G~~----~Pv~~~SR~-~s~~~~~~~~a 291 (299)
T PRK07742 220 SQIAAEHKGIVSDVAGKADILLVPTIEAGNVLYKSLVYFADA-K-VGAMIAGAK----APIVLTSRA-DSAETKLYSLA 291 (299)
T ss_pred CHHHHHHhCCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcCC-c-EeceeeccC----CCEEeCCCC-CCHHHHHHHHH
Confidence 32 1 2222 35799999999 599999888877665 4 344444533 455533333 22234455443
No 46
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=78.58 E-value=1.6 Score=40.82 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=37.4
Q ss_pred HhCCCCccEE-EcCCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCCh
Q 017413 250 VKNPAAFDVL-VMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANP 314 (372)
Q Consensus 250 v~~P~~fdVi-v~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANP 314 (372)
+++|+.+-+| ||+- ||..|-+|-|+..+.|-|+|||--| +.|+-.=-|
T Consensus 141 vk~~ewl~~igVCTh----------------LGCVp~~~AGd~gg~~CPCHGSHYd-asGRIrkGP 189 (210)
T KOG1671|consen 141 VKKPEWLVVIGVCTH----------------LGCVPIANAGDYGGYYCPCHGSHYD-ASGRIRKGP 189 (210)
T ss_pred ccCcceEEEEeeecc----------------ccccccccccccCceeccccccccc-ccCceecCC
Confidence 5666666444 5554 7999999999999999999999999 888744333
No 47
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=72.09 E-value=27 Score=34.61 Aligned_cols=98 Identities=20% Similarity=0.263 Sum_probs=63.7
Q ss_pred cHHHHHHHHHHHHHHHHhCC--CCceEEEec---CcccccchHHHHHHHHHHHhhCCCceee-eEeHHHHHHH------H
Q 017413 182 TRQASLRVAEYAFHYAKTHG--RERVSAIHK---ANIMQKTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMM------L 249 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~--rk~Vt~v~K---aNvl~~tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~------L 249 (372)
|-+.-..|+..|.++|+.-+ ..||-++.= .|---.+...-++.++-+.+++|++.++ ++.+|++.-. .
T Consensus 157 ~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~~~~~~~~~vdG~l~~D~Al~~~~a~~K~ 236 (303)
T TIGR00651 157 NAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIAKEKRPDLTIDGELQFDAAFVEKVAEKKA 236 (303)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHHhccCCCeEEEecCchhhhCCHHHHHhhC
Confidence 56667778889999998765 456665532 2221112234556555454578998887 5666877432 1
Q ss_pred HhCC--CCccEEEcCCcc-hhhHHHHHhhhcCC
Q 017413 250 VKNP--AAFDVLVMPNLY-GDIISDLCAGLIGG 279 (372)
Q Consensus 250 v~~P--~~fdViv~~Nlf-GDIlSDlaa~l~Gg 279 (372)
..+| ++-||+|+||++ |||+--+.-.+.|+
T Consensus 237 ~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 237 PNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred CCCccCCcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 2222 458999999997 89988888777654
No 48
>PRK12862 malic enzyme; Reviewed
Probab=71.55 E-value=23 Score=39.60 Aligned_cols=99 Identities=18% Similarity=0.247 Sum_probs=68.6
Q ss_pred cccHHHHHHHHHHHHHHHHhCC-CCceEEEecCccc---ccchHHHHHHHHHHHhhCCCceee-eEeHHHHHHHHHhC--
Q 017413 180 IITRQASLRVAEYAFHYAKTHG-RERVSAIHKANIM---QKTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMMLVKN-- 252 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~r~-rk~Vt~v~KaNvl---~~tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~Lv~~-- 252 (372)
-.|.+...+|++.+.++++.-| ..||=+.--+|.- ......-++.++.+.+++|++.++ .+..|++...-+..
T Consensus 608 ~pt~e~La~ia~~aa~~ar~~GIePRVAvLshs~~Gs~~~ee~~~i~pAiellr~~~~g~~VdGPl~aDtAf~~~~~~~K 687 (763)
T PRK12862 608 DPTAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSSDSPSARKMREALEILRERAPDLEVDGEMHGDAALDEELRDRI 687 (763)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcccccCCCCCchHHHHHHHHHHHHhcCCCcEEEcCCCHHHHcCHHHHhhc
Confidence 4588999999999999998655 3567666222332 223335566666666688999887 56778886442222
Q ss_pred -C-----CCccEEEcCCcc-hhhHHHHHhhhcC
Q 017413 253 -P-----AAFDVLVMPNLY-GDIISDLCAGLIG 278 (372)
Q Consensus 253 -P-----~~fdViv~~Nlf-GDIlSDlaa~l~G 278 (372)
| +.+||+|+||+. |+|.-.+..-+.|
T Consensus 688 ~~~s~vaG~aDvLV~P~~DqGNI~~Kll~f~~g 720 (763)
T PRK12862 688 FPDSRLEGEANLLVFPNLDAANIAYNLLKTAAG 720 (763)
T ss_pred CCCCccCCCCCEEEecChhHhhHHHHHHHHhcc
Confidence 2 349999999995 8888888777654
No 49
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=70.14 E-value=1.5e+02 Score=31.15 Aligned_cols=241 Identities=14% Similarity=0.163 Sum_probs=122.3
Q ss_pred cCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccc-----cccCCC----------Cc----HHHHH
Q 017413 36 SSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEID-----PRTQSF----------LT----WESLE 96 (372)
Q Consensus 36 ~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~-----~~~g~~----------lp----~etl~ 96 (372)
++-.++.++++..++ -+++++++.+.++.- . ++ .+.+|.... ++.|-. -+ ...+.
T Consensus 171 ~~~~~~~~~~v~~~e--d~~vl~Aa~~a~~~~-~-~~--~iLvG~~~~I~~~~~~~g~~~~~~eIi~~~~~~~s~~~a~~ 244 (466)
T PRK08190 171 ARGLPPLRTAVVHPC--DAESLRGALEAAEAG-L-IE--PVLVGPEAKIRAAAEEAGLDLSGVRIVDVPHSHAAAARAVA 244 (466)
T ss_pred HhcCCCCceEEEcCC--CHHHHHHHHHHHHcC-C-ee--EEEECCHHHHHHHHHHcCCCcCCCEEECCCCCHHHHHHHHH
Confidence 444455788888887 789999998877762 2 22 344554321 111100 01 23445
Q ss_pred HHH--hcCeEEECcccCCCCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCe
Q 017413 97 SVR--RNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGV 174 (372)
Q Consensus 97 ~i~--~~da~L~g~~~~p~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~ 174 (372)
.++ ++|+.++|.+.|. ..||-.|+--..++..+.+++ +.++ +.. .|.+. ...-+.
T Consensus 245 lv~~G~aD~~v~G~~~T~---------~~l~~~l~~~~g~~~~~~ls~---------~~~~-~~p--~~~~~--~~~~D~ 301 (466)
T PRK08190 245 LARAGEVEALMKGSLHTD---------ELLSAVVARDSGLRTERRISH---------VFAM-DVP--TYPRP--LLITDA 301 (466)
T ss_pred HHHCCCCCEEEeCCCChH---------HHHHHHhchhcCCCCCCcccE---------EEEE-Eec--CCCCe--EEEEcc
Confidence 555 6899999877662 234444442222222222222 1111 110 02111 111112
Q ss_pred EEEeecccHHHHHHHHHHHHHHHHhCCC--CceEEEecCcccccchHHHHHHHHH--HHh--hCCCceee-eEeHHHHHH
Q 017413 175 VESLKIITRQASLRVAEYAFHYAKTHGR--ERVSAIHKANIMQKTDGLFLKCCRE--VAE--KYPEITYE-EVVIDNCCM 247 (372)
Q Consensus 175 a~~~~~~Tr~~~eRiar~AFe~A~~r~r--k~Vt~v~KaNvl~~tdglf~~~~~e--va~--eYp~I~~~-~~~vDa~~~ 247 (372)
+.... -|-+.-..|+..|.++|+.-|. .||-+..=++--......-++...- ..+ ++||..++ ++..|++.-
T Consensus 302 gvn~~-P~~e~l~~ia~~a~~~ar~lGie~PkVAlLs~s~~~~~~~~~~~eA~~L~~~~~~~~~~~~~vdG~l~~D~A~~ 380 (466)
T PRK08190 302 AINIA-PTLEDKRDIVQNAIDLAHALGVEEPKVAILSAVETVNPKMPSTLDAAALCKMADRGQITGGIVDGPLAFDNAIS 380 (466)
T ss_pred eeccC-cCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeceecCCCCChhHHHHHHHHHHHhcCCCCCcEEecCchHhhhcC
Confidence 22221 2567777888889999986664 4555442221111122222332221 121 38988887 466677652
Q ss_pred H-H--HhCC-----CCccEEEcCCc-chhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCC
Q 017413 248 M-L--VKNP-----AAFDVLVMPNL-YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLAN 313 (372)
Q Consensus 248 ~-L--v~~P-----~~fdViv~~Nl-fGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iAN 313 (372)
. + .+-| ++-||+|.||+ -|||+.-+..-+.|+-.. +.-+|-. -|+|=+... -..+++.|
T Consensus 381 ~~~a~~k~~~s~v~G~Anvli~P~l~agNi~~K~~~~~~~~~~~--G~i~G~~----~Pv~~~sR~-~s~~~~~~ 448 (466)
T PRK08190 381 AEAARTKGIVSPVAGQADILVVPDLEAGNMLAKQLTYLAGADAA--GIVLGAR----VPIILTSRA-DSLRARLA 448 (466)
T ss_pred HHHHHhhCCCCCCCCcCCEEEcCChHHhHHHHHHHHHhcCCcEE--eEEeccc----CceEeCCCC-CCHHHHHH
Confidence 1 1 2222 35799999997 699999988877665322 2344543 356533333 22345555
No 50
>PRK12861 malic enzyme; Reviewed
Probab=69.65 E-value=32 Score=38.51 Aligned_cols=127 Identities=15% Similarity=0.084 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCC-CceEEEecCcc---cccchHHHHHHHHHHHhhCCCceee-eEeHHHHHHHHH------
Q 017413 182 TRQASLRVAEYAFHYAKTHGR-ERVSAIHKANI---MQKTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMMLV------ 250 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~r-k~Vt~v~KaNv---l~~tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~Lv------ 250 (372)
|-+....|+..|.++|+.-|. .||-+..=+|. -..+....++..+-+.+++|++.++ ++..|++.-.-+
T Consensus 611 ~aeqla~Ia~~aa~~ak~lGiePkVAlLS~St~GS~~~~~~~km~eA~~l~~~~~pd~~vdGemq~DaAl~~e~a~~K~p 690 (764)
T PRK12861 611 DAEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIVREQAPDLEADGEMHGDCALDEGLRARLLP 690 (764)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCchhHHHHHHHHHHhhCCCcEEEecCcHHHhCCHHHHHhcCC
Confidence 556666778888888877553 46666642332 1112345666666555578998887 577786643211
Q ss_pred hC--CCCccEEEcCCc-chhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCC
Q 017413 251 KN--PAAFDVLVMPNL-YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLAN 313 (372)
Q Consensus 251 ~~--P~~fdViv~~Nl-fGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iAN 313 (372)
.+ -++-||+|+||+ -|||+..+...+.|+---...... ++=-|+|=..+. -.-++|.|
T Consensus 691 ~s~vaG~ANVLVfPnLeAGNI~yKll~~l~g~~~aiGpIL~----G~~kPV~~lSRg-~sv~divn 751 (764)
T PRK12861 691 MSPLKGAANLLVCPNVDAGNIAYNLLKTEAGSNVAVGPFLL----GVNAPVNILTSS-ATVRRIVN 751 (764)
T ss_pred CCcCCCcCCEEEECCcchhhHHHHHHHHHcCCCceecchhh----cCCCceEeCCCC-CCHHHHHH
Confidence 12 245889999999 999999998888764211122222 344577733333 22235566
No 51
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=68.25 E-value=34 Score=38.27 Aligned_cols=98 Identities=22% Similarity=0.249 Sum_probs=68.0
Q ss_pred cHHHHHHHHHHHHHHHHhCC-CCceEEE---ecCcccccchHHHHHHHHHHHhhCCCceee-eEeHHHHHHH------HH
Q 017413 182 TRQASLRVAEYAFHYAKTHG-RERVSAI---HKANIMQKTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMM------LV 250 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~-rk~Vt~v---~KaNvl~~tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~------Lv 250 (372)
|-+.-..|+..|-++|+.-| ..||=++ ++.+.-..+...-++..+-+.+++|++.++ ++.+|++.-. ..
T Consensus 602 taeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~llk~~~~~l~~dGemq~D~Al~~~va~~K~p 681 (752)
T PRK07232 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELLRERAPDLEVDGEMHGDAALNEEIRKDLYP 681 (752)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHHHhhCCCcEEEEechHHHhCCHHHHHhhCC
Confidence 56777788888899998765 3578777 665543323345556666565678998887 5667877432 12
Q ss_pred hCC--CCccEEEcCCc-chhhHHHHHhhhcCC
Q 017413 251 KNP--AAFDVLVMPNL-YGDIISDLCAGLIGG 279 (372)
Q Consensus 251 ~~P--~~fdViv~~Nl-fGDIlSDlaa~l~Gg 279 (372)
.+| +.-||+|.||+ -|||+..+...+.|+
T Consensus 682 ~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~ 713 (752)
T PRK07232 682 FSRLKGPANVLVMPNLEAANISYNLLKELGGG 713 (752)
T ss_pred CCccCCcCCEEEeCCchhhHHHHHHHHHhcCC
Confidence 222 35789999999 599999998888665
No 52
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=62.83 E-value=32 Score=27.39 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHH-hhC--CCceeeeEeHHHHHHHHHhCCCCccEEEcCC
Q 017413 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKY--PEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263 (372)
Q Consensus 191 r~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva-~eY--p~I~~~~~~vDa~~~~Lv~~P~~fdViv~~N 263 (372)
++++.+|++++..+|+.++. +.-+.+.+++-+ +.. +.|.+.+ -|. ......+.+||+|++.+
T Consensus 14 ~~~~~l~~~~~~~~v~gvD~-------s~~~~~~a~~~~~~~~~~~~i~~~~--~d~--~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 14 RLSIALARLFPGARVVGVDI-------SPEMLEIARERAAEEGLSDRITFVQ--GDA--EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp HHHHHHHHHHTTSEEEEEES-------SHHHHHHHHHHHHHTTTTTTEEEEE--SCC--HGGTTTSSCEEEEEECS
T ss_pred HHHHHHHhcCCCCEEEEEeC-------CHHHHHHHHHHHHhcCCCCCeEEEE--Ccc--ccCcccCCCCCEEEECC
Confidence 35677777544568999984 334455555544 222 4455443 444 56677788899999988
No 53
>PRK05805 phosphate butyryltransferase; Validated
Probab=61.94 E-value=1.1e+02 Score=30.11 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CceEEE---ecCcccccchHHHHHHHHHHHh-----hCCCceee-eEeHHHHHHH--
Q 017413 182 TRQASLRVAEYAFHYAKTHGR--ERVSAI---HKANIMQKTDGLFLKCCREVAE-----KYPEITYE-EVVIDNCCMM-- 248 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~r--k~Vt~v---~KaNvl~~tdglf~~~~~eva~-----eYp~I~~~-~~~vDa~~~~-- 248 (372)
|-+.-..|++.|-+.|++-|. .||-++ +|.|- ...-.++ +.++++ ++|+..++ ++.+|++.-.
T Consensus 149 ~~~q~~~I~~~a~~~~~~lG~e~PkVA~LS~s~~~~~---~~~~t~~-a~~l~~~~~~~~~~~~~vdG~l~~D~A~~~~~ 224 (301)
T PRK05805 149 DLKEKIDIINNAVTVAHAIGIENPKVAPICAVEVVNP---KMPATLD-AALLSKMSDRGQIKGCIVDGPLALDNALSEEA 224 (301)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCeEEEEecccCCCC---CChHHHH-HHHHHHHHhhCcCCCeEEEechHHHHhcCHHH
Confidence 667777889999999998775 455443 33221 1112222 233332 46998887 5677887522
Q ss_pred -HHhCC-----CCccEEEcCCc-chhhHHHHHhhhcCCCCcccccccCCCc
Q 017413 249 -LVKNP-----AAFDVLVMPNL-YGDIISDLCAGLIGGLGLTPSCNIGEGG 292 (372)
Q Consensus 249 -Lv~~P-----~~fdViv~~Nl-fGDIlSDlaa~l~GglGl~pSanig~~~ 292 (372)
-.+-| ++.||+|.||+ -|||+.-+..-+.| .- ..+.-.|-..
T Consensus 225 a~~k~~~s~v~G~Anvli~Pnl~agNi~yK~l~~~~~-~~-~~gil~G~~~ 273 (301)
T PRK05805 225 AKHKGIDGPVAGNADILLVPNIEAGNVMYKTLTYFAD-CK-NGGLLVGTSA 273 (301)
T ss_pred HHHhCCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcC-Ce-EEeeeecCCC
Confidence 12222 35899999997 79999988877755 23 3336666543
No 54
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=54.94 E-value=54 Score=32.72 Aligned_cols=102 Identities=20% Similarity=0.279 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHhcCeEEECcccCCC---CCC--CCcccHHHHHhhcceeeeEe------ccCC-------CCCC------
Q 017413 89 FLTWESLESVRRNKVGLKGPMATPI---GKG--HRSLNLTLRKELNLYANVRP------CYSL-------PGYK------ 144 (372)
Q Consensus 89 ~lp~etl~~i~~~da~L~g~~~~p~---~~~--~~s~~~~LR~~ldlyanvRP------~k~~-------pg~~------ 144 (372)
.-.++++++|+++|.+++||- .|. .+. .....-+||+.=---..|-| ++-. -|++
T Consensus 172 ~~~p~vl~AI~~AD~IVlGPg-sp~TSI~P~LlVpgI~eAL~~s~A~vV~Vspiig~~~v~Gpa~~~m~a~G~~~s~~gv 250 (303)
T cd07186 172 RPAPEVLEAIEDADLVIIGPS-NPVTSIGPILALPGIREALRDKKAPVVAVSPIIGGKAVSGPAAKLMAALGFEPSAAGV 250 (303)
T ss_pred CCCHHHHHHHHhCCEEEECCC-ccHHHhhhhccchhHHHHHHhCCCCEEEEcCCCCCCCCCchHHHHHHHcCCCCcHHHH
Confidence 357899999999999999994 331 111 11222344444222222322 2221 0121
Q ss_pred -CcCCC-ccEEEeecCCCcccccceeeeeCC---eEEEeecccHHHHHHHHHHHH
Q 017413 145 -TRYDD-VNLITIRENTEGEYSGLEHQVVRG---VVESLKIITRQASLRVAEYAF 194 (372)
Q Consensus 145 -~~~~~-iDivIvREnteG~Y~g~~~~~~~~---~a~~~~~~Tr~~~eRiar~AF 194 (372)
..|++ +|..|+-+--.+.-...+ ..| ....+.--+.+..+|+||.+.
T Consensus 251 a~~Y~~~~d~~vid~~D~~~~~~~~---~~g~~v~~~~t~m~~~~~~~~la~~~l 302 (303)
T cd07186 251 AEIYGDLLDGFVIDEADRALADAIE---ALGIEVSRTDTLMTDEEDKIRLAREVL 302 (303)
T ss_pred HHHhhccccEEEEcccccccchhcc---cCCceeEecCccCCCHHHHHHHHHHHh
Confidence 12455 488888654433221111 112 234555557889999998875
No 55
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=54.77 E-value=71 Score=31.84 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=64.4
Q ss_pred cHHHHHHHHHHHHHHHHhCCC-CceEEEe---cCc-ccccchHHHHHHHHHHHhhCCCceee-eEeHHHHHHH-H--HhC
Q 017413 182 TRQASLRVAEYAFHYAKTHGR-ERVSAIH---KAN-IMQKTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMM-L--VKN 252 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~r-k~Vt~v~---KaN-vl~~tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~-L--v~~ 252 (372)
|-+.-..|+..|.++|+.-|. .||-++. |.+ -++ +...-++.++-+.+++|+..++ ++..|++.-. + .+-
T Consensus 173 ~~e~l~~ia~~a~~~ar~lG~~PkVAlLs~s~~Gs~~~~-~~~~~~ea~~ll~~~~~~~~vdGel~~D~A~~~~~~~~k~ 251 (324)
T PRK09653 173 TAEQLAEIAINSAETAKAFGIDPKVAMLSFSTKGSAKGP-EVDKVQEATEIAKELAPDLKIDGELQFDAAFVPEVAAKKA 251 (324)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCC-cHHHHHHHHHHHHhhCCCCeEEecchHHHhCCHHHHHhhC
Confidence 667778888899999986543 4555542 223 222 3345566666555579999888 5677877422 1 222
Q ss_pred C-----CCccEEEcCCc-chhhHHHHHhhhcCC
Q 017413 253 P-----AAFDVLVMPNL-YGDIISDLCAGLIGG 279 (372)
Q Consensus 253 P-----~~fdViv~~Nl-fGDIlSDlaa~l~Gg 279 (372)
| ++-||+|.||+ -|||+.-+...+.|+
T Consensus 252 ~~s~v~G~AnvLi~P~l~agNi~yK~l~~~~~~ 284 (324)
T PRK09653 252 PGSPVAGKANVFVFPSLEAGNIGYKIAQRLGGF 284 (324)
T ss_pred CCCccCCcCCEEEcCChHHhHHHHHHHHHhcCC
Confidence 3 35799999999 599999888877665
No 56
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=54.42 E-value=59 Score=32.36 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.2
Q ss_pred CcHHHHHHHHhcCeEEECcc
Q 017413 90 LTWESLESVRRNKVGLKGPM 109 (372)
Q Consensus 90 lp~etl~~i~~~da~L~g~~ 109 (372)
-.++++++|+++|++++||-
T Consensus 172 a~peal~AI~~AD~IIlGPg 191 (297)
T TIGR01819 172 IAPKVLEAIRKEDNILIGPS 191 (297)
T ss_pred CCHHHHHHHHhCCEEEECCC
Confidence 47899999999999999994
No 57
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=49.90 E-value=66 Score=26.20 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcc
Q 017413 40 TPITATLFPGDGIGPEIAE-SVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPM 109 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~-~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~ 109 (372)
+..+|.++=|.|++-.++. ..++.++.-+++++++...++.. -+...++|++|.+|-
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~-------------~~~~~~~Dvill~pq 59 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAA-------------GEKLDDADVVLLAPQ 59 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHH-------------HhhcCCCCEEEECch
Confidence 4578999999999988654 44445555688887766665421 123457899999883
No 58
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=49.54 E-value=52 Score=30.00 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhh--H
Q 017413 192 YAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDI--I 269 (372)
Q Consensus 192 ~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDI--l 269 (372)
.++| |..||-++|++|+|..-. ....++-.+.+.-+ ..+.+-..-+-....++.+....||+|.+.==|..- +
T Consensus 56 lGlE-ALSRGA~~v~fVE~~~~a---~~~i~~N~~~l~~~-~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~ 130 (183)
T PF03602_consen 56 LGLE-ALSRGAKSVVFVEKNRKA---IKIIKKNLEKLGLE-DKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYY 130 (183)
T ss_dssp HHHH-HHHTT-SEEEEEES-HHH---HHHHHHHHHHHT-G-GGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHH
T ss_pred cHHH-HHhcCCCeEEEEECCHHH---HHHHHHHHHHhCCC-cceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHH
Confidence 4677 778888999999987642 23444444444322 123333333333455677788999988654333322 3
Q ss_pred HHHHhhhc
Q 017413 270 SDLCAGLI 277 (372)
Q Consensus 270 SDlaa~l~ 277 (372)
..+...+.
T Consensus 131 ~~~l~~l~ 138 (183)
T PF03602_consen 131 EELLELLA 138 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44544443
No 59
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=47.81 E-value=18 Score=37.56 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=19.7
Q ss_pred CccEEEeecCCCcccccceeeee
Q 017413 149 DVNLITIRENTEGEYSGLEHQVV 171 (372)
Q Consensus 149 ~iDivIvREnteG~Y~g~~~~~~ 171 (372)
..+++++||||||.|.+.+....
T Consensus 127 ~~~i~i~Ren~e~~y~~id~vi~ 149 (413)
T PTZ00435 127 KKPIVIGRHAFGDQYKATDFVVD 149 (413)
T ss_pred CCCeeeeccccCCCcCceEEEEe
Confidence 47899999999999999886653
No 60
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=47.36 E-value=1.4e+02 Score=27.44 Aligned_cols=95 Identities=15% Similarity=0.074 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEe-----HH---HHHHHHHhCCC
Q 017413 183 RQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVV-----ID---NCCMMLVKNPA 254 (372)
Q Consensus 183 r~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~-----vD---a~~~~Lv~~P~ 254 (372)
.......+++..+.. +|.+++-++. .+....+.....+-+++..+++|++++.... .+ ..+.++++...
T Consensus 105 ~~~g~~~~~~l~~~~--~g~~~i~~l~-~~~~~~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (270)
T cd06308 105 YEIGRQAGEYIANLL--PGKGNILEIW-GLEGSSPAIERHDGFKEALSKYPKIKIVAQQDGDWLKEKAEEKMEELLQANP 181 (270)
T ss_pred HHHHHHHHHHHHHHc--CCCceEEEEE-CCCCCchHHHHHHHHHHHHHHCCCCEEEEecCCCccHHHHHHHHHHHHHhCC
Confidence 344444444444432 3556777774 1111122334456667766778877643321 12 23456665545
Q ss_pred CccEEEcCCcchhhHHHHHhhhcCCCCcc
Q 017413 255 AFDVLVMPNLYGDIISDLCAGLIGGLGLT 283 (372)
Q Consensus 255 ~fdViv~~NlfGDIlSDlaa~l~GglGl~ 283 (372)
.+|.|++.| |.++.-+....=..|+-
T Consensus 182 ~~~aI~~~~---d~~a~g~~~al~~~g~~ 207 (270)
T cd06308 182 DIDLVYAHN---DPMALGAYLAAKRAGRE 207 (270)
T ss_pred CCcEEEeCC---cHHHHHHHHHHHHcCCC
Confidence 799998876 55554333322234443
No 61
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=47.15 E-value=70 Score=31.95 Aligned_cols=98 Identities=22% Similarity=0.286 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHHHHHHhCC--CCceEEEecCccccc---chHHHHHHHHHHHhhCCCceee-eEeHHHHHHH------H
Q 017413 182 TRQASLRVAEYAFHYAKTHG--RERVSAIHKANIMQK---TDGLFLKCCREVAEKYPEITYE-EVVIDNCCMM------L 249 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~--rk~Vt~v~KaNvl~~---tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~------L 249 (372)
|-+.-..|+..+.+.|+.-| ..||-++.=+|---. +..--++.++-+.+.+|+..++ ++.+|++.-. .
T Consensus 173 ~~e~la~Ia~~aa~~~~~~g~~~PkvA~LS~s~~gs~~~~s~~~~~~a~~~~~~~~~~~~vdGe~q~D~Al~~~~~~~k~ 252 (319)
T PF01515_consen 173 TAEQLAEIAENAAETARRFGIEEPKVALLSYSEFGSPKGPSTDKVREAVEIAREKQPDLIVDGEMQFDAALSPEVAAKKY 252 (319)
T ss_dssp -HHHHHHHHHHHHHHHHHTTSSS-EEEEE-SSSTTSSTSHHHHHHHHHHHHHHHHCTTSEEEEEE-HHHHH-HHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCeEEEEeCccCCCCCCchHHHHHHHHHHHHhhCCCceecCccccchhcCHHHHHHhC
Confidence 44566677778888888766 346666554443321 1122333333344578998887 6888988642 1
Q ss_pred HhC--CCCccEEEcCCc-chhhHHHHHhhhcCC
Q 017413 250 VKN--PAAFDVLVMPNL-YGDIISDLCAGLIGG 279 (372)
Q Consensus 250 v~~--P~~fdViv~~Nl-fGDIlSDlaa~l~Gg 279 (372)
..+ -++-||+|.||+ -|||+.-+...+.|+
T Consensus 253 ~~s~v~G~AnvLIfPnl~agNi~~K~l~~~~~~ 285 (319)
T PF01515_consen 253 PFSPVAGDANVLIFPNLEAGNIAYKLLQRLGGA 285 (319)
T ss_dssp TTSSTTTC-SEEE-SSHHHHHHHHHHHHHTTTE
T ss_pred CCCccCCcCCEEEeCChhHhHHHHHHHHHhhCc
Confidence 222 235889999999 589999998887773
No 62
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=44.53 E-value=1.1e+02 Score=33.16 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=65.8
Q ss_pred eEEEeecccHHHHHH-HHHHHHHHHHhC--CCC--------ceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEe-
Q 017413 174 VVESLKIITRQASLR-VAEYAFHYAKTH--GRE--------RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVV- 241 (372)
Q Consensus 174 ~a~~~~~~Tr~~~eR-iar~AFe~A~~r--~rk--------~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~- 241 (372)
+++-+-..+-.+.|| +.|.|.+.|+.. +.| +|+++-.+=--+..-.+|.+..+| ..-|..+++.+-
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 241 (578)
T PRK15490 164 LALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLE--EQVEVLEIAKITG 241 (578)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHh--cCCceEEeeccch
Confidence 444444445555554 778888888642 333 688887776666677789888887 333333333221
Q ss_pred --HHHH----------------------H--HHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCC
Q 017413 242 --IDNC----------------------C--MMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGL 280 (372)
Q Consensus 242 --vDa~----------------------~--~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~Ggl 280 (372)
.|.+ . +.+++ -.++|||-+-|+...++.-+++-++|-.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir-~~rpDIVHt~~~~a~l~g~laA~lagvp 305 (578)
T PRK15490 242 NLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLC-ERKLDYLSVWQDGACLMIALAALIAGVP 305 (578)
T ss_pred hhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHH-HcCCCEEEEcCcccHHHHHHHHHhcCCC
Confidence 2222 1 12222 3678999999998889999999888653
No 63
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=42.21 E-value=1.8e+02 Score=28.89 Aligned_cols=167 Identities=20% Similarity=0.243 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHh--cCeEEECcccCCCCCCCCc
Q 017413 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR--NKVGLKGPMATPIGKGHRS 119 (372)
Q Consensus 42 ~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~--~da~L~g~~~~p~~~~~~s 119 (372)
--|+|-||+|+ .++++.+|+..-+ .|+ ++..|=+++.++++++ ++-++.=|-+. .
T Consensus 98 ~vVAv~~g~g~--------~~lf~~~Gv~~vi----~gg----qt~nPS~~dl~~Ai~~~~a~~VivLPNn~-------n 154 (313)
T PF13684_consen 98 GVVAVAPGEGL--------AELFRSLGVDVVI----SGG----QTMNPSTEDLLNAIEKVGADEVIVLPNNK-------N 154 (313)
T ss_pred EEEEEecCccH--------HHHHHhCCCeEEE----eCC----CCCCCCHHHHHHHHHhCCCCeEEEEeCCc-------h
Confidence 46888899998 2556777754332 222 3456667788888887 44455544333 1
Q ss_pred ccHHHHHhhcce----eeeEeccCCCC-CC-----CcC--------------CCccEEE----eecC-------CCcccc
Q 017413 120 LNLTLRKELNLY----ANVRPCYSLPG-YK-----TRY--------------DDVNLIT----IREN-------TEGEYS 164 (372)
Q Consensus 120 ~~~~LR~~ldly----anvRP~k~~pg-~~-----~~~--------------~~iDivI----vREn-------teG~Y~ 164 (372)
..+..++...+. .-|-|+|++|. +. .|- +.+..-- +|+- ..|-|.
T Consensus 155 i~~aa~qa~~~~~~~~v~VipTks~~qGlaAl~~~dp~~~~~~n~~~M~ea~~~v~~~~It~Avrd~~~~~~~i~~gd~i 234 (313)
T PF13684_consen 155 IILAAEQAARLSEDKNVVVIPTKSIPQGLAALLVFDPEADLEENVEAMTEAAARVRTGEITYAVRDTKINGGEIKKGDYI 234 (313)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHhCccCChHHHHHHHHHHHhhCeeeeEEEeeecceecCcccccCCEE
Confidence 223333222222 67888888762 21 010 0111000 1111 112222
Q ss_pred cceeeeeCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeH
Q 017413 165 GLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI 242 (372)
Q Consensus 165 g~~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~v 242 (372)
|. .++. -+.+-+..++.++..++.-...+..-||+..=.++- +..-.++.+.+.+.||+++++-..-
T Consensus 235 gl----~~~~----i~~~~~~~~~~~~~ll~~l~~~~~elvTi~~G~~~~---~~~a~~l~~~l~~~~p~~eve~~~G 301 (313)
T PF13684_consen 235 GL----VDGK----IVVVGKDLEEALKKLLEKLLDEDGELVTIYYGEDVS---EEEAEALAEFLEEKYPDVEVEVYDG 301 (313)
T ss_pred EE----eCCE----EEEEcCCHHHHHHHHHHHhhccCCeEEEEEecCCCC---HHHHHHHHHHHHHHhCCeEEEEEEC
Confidence 21 1111 122334467777777776665556678887755543 3455666777777899999986543
No 64
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=41.18 E-value=2.2e+02 Score=27.91 Aligned_cols=115 Identities=14% Similarity=0.201 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CceEEEecCcccccchHHHHHHHHHHHh-----hCCCceee-eEeHHHHHHH-H--H
Q 017413 182 TRQASLRVAEYAFHYAKTHGR--ERVSAIHKANIMQKTDGLFLKCCREVAE-----KYPEITYE-EVVIDNCCMM-L--V 250 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~r--k~Vt~v~KaNvl~~tdglf~~~~~eva~-----eYp~I~~~-~~~vDa~~~~-L--v 250 (372)
|-+.-..|+..|-++|+.-|. .||-+..=.+--......-++.++ +.+ +|||..++ ++..|++.-. . .
T Consensus 145 ~~e~l~~ia~~a~~~ar~lGie~PrVAlLs~g~e~~kg~~~~~eA~~-L~~~~~~~~~~~~~vdG~l~~D~A~~~~~a~~ 223 (294)
T TIGR02706 145 ELKDKVQIINNAVKVAHAIGIDVPKVAPLAAVEVVNPKMPATVDAAA-LAKMSDRGQIKGCIVDGPLALDNAISEEAAKH 223 (294)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCcccCCCCChHHHHHHH-HHHHHhcCCCCCeEEEechHHHHhcCHHHHHH
Confidence 566777888888999987653 466555222211112223344333 322 35788886 5677887322 1 2
Q ss_pred hCC-----CCccEEEcCCc-chhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCc
Q 017413 251 KNP-----AAFDVLVMPNL-YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSA 303 (372)
Q Consensus 251 ~~P-----~~fdViv~~Nl-fGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsAp 303 (372)
+.| ++.||+|.||+ -|||+.-+..-+.|+ . ..+.-.|- --|+|=+.+
T Consensus 224 k~~~s~v~g~Anvli~P~l~agNi~~K~~~~~~~~-~-~g~il~G~----~~Pv~~~sR 276 (294)
T TIGR02706 224 KGIEGEVAGKADILLVPDIEAGNVLYKTLTYFAKS-K-NGGILVGT----KAPVVLTSR 276 (294)
T ss_pred hCCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcCC-c-EeceeecC----CCCeEECCC
Confidence 333 35799999999 699999887777543 3 33334443 345553333
No 65
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=40.50 E-value=1e+02 Score=25.70 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=38.4
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECc
Q 017413 41 PITATLFPGDGIGPEIAE-SVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGP 108 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~-~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~ 108 (372)
..+|.++=|-|+|-.++- ......+..+++++.+.+..+.. . +...++|++|.||
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~----------~---~~~~~~DviLl~P 58 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA----------G---EKGQNADVVLLGP 58 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchh----------h---ccccCCCEEEECH
Confidence 458999999999999987 66666666687777655432211 0 1234689999988
No 66
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=39.94 E-value=1.4e+02 Score=27.41 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=52.8
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHHHHhcCCCeEEEEEE-e---ec---c-cccccCCCCcH----HHHHHHHhcCeEEECc
Q 017413 42 ITATLFPG-DGIGPEIAESVKQVFRTAEVPVEWEEHY-V---GT---E-IDPRTQSFLTW----ESLESVRRNKVGLKGP 108 (372)
Q Consensus 42 ~~I~vi~G-DGiGpEv~~~~~~vl~a~~~~i~~~~~~-~---g~---~-~~~~~g~~lp~----etl~~i~~~da~L~g~ 108 (372)
..|...|= +|--..+.+++.+-++..|.+++..... . +. . ++.+....+++ +.++.+.++|++++|.
T Consensus 4 ~~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs 83 (207)
T COG0655 4 LGINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS 83 (207)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC
Confidence 34445543 8888999999999999998777764433 1 11 1 11112244554 4455599999999976
Q ss_pred ccCCCCCCCCcccHHHHHhhc
Q 017413 109 MATPIGKGHRSLNLTLRKELN 129 (372)
Q Consensus 109 ~~~p~~~~~~s~~~~LR~~ld 129 (372)
|.. +.....+++.-+|
T Consensus 84 ---Pvy--~g~vsa~~K~fiD 99 (207)
T COG0655 84 ---PVY--FGNVSAQMKAFID 99 (207)
T ss_pred ---Cee--cCCchHHHHHHHh
Confidence 432 2245678888888
No 67
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=39.74 E-value=3.8e+02 Score=26.34 Aligned_cols=130 Identities=17% Similarity=0.144 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CceEEEe---cCcc-cccchHHHHHHHHHHHhhCCCceee-eEeHHHHHHH------
Q 017413 182 TRQASLRVAEYAFHYAKTHGR--ERVSAIH---KANI-MQKTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMM------ 248 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~r--k~Vt~v~---KaNv-l~~tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~------ 248 (372)
|-+.-..|++.|.+.|++-|. .||-++. |.|- ++.+ .-.++.. ++.++-|+..++ ++.+|++.-.
T Consensus 125 ~~eqk~~I~~nA~~~ar~lGie~PkVAlLS~se~~s~~~~st-~~a~~l~-~~~~~~~~~~vdGpl~~D~Al~~e~a~~K 202 (271)
T TIGR02709 125 TQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSS-VLAKEVT-AHFNDQQEATVFGPLSLDLATSEEAVAHK 202 (271)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCeEEEEecccCCCCCCchH-HHHHHHH-HHHHhCCCCEEEecCchhhhcCHHHHHhh
Confidence 667778889999999998775 5665554 3232 1111 1223333 334433888876 4556766422
Q ss_pred HHhCC--CCccEEEcCCc-chhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHH
Q 017413 249 LVKNP--AAFDVLVMPNL-YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML 325 (372)
Q Consensus 249 Lv~~P--~~fdViv~~Nl-fGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML 325 (372)
-+.+| ++-||+|.||+ -|||+..+...+.| . -..+.-+|-. -|+|=+.+. .++-.-+.|.++.+
T Consensus 203 ~~~s~vaG~AniLI~PnleaGNi~yK~l~~~~~-~-~~ggil~G~~----~PV~~~SR~-------~s~~~~~~siala~ 269 (271)
T TIGR02709 203 RYSGPIMGDADILVVPTIDVGNCLYKSLTLFGH-A-KVGGTIVGTK----VPVVLTSRS-------DSTESKFHSLRFAM 269 (271)
T ss_pred CCCCCCCCcCCEEEcCChHHHHHHHHHHHHhcC-C-eEEcccccCC----CCEEECCCC-------CCHHHHHHHHHHHh
Confidence 22333 56799999999 59999888776544 2 2333344433 455533333 23444566666655
Q ss_pred h
Q 017413 326 R 326 (372)
Q Consensus 326 ~ 326 (372)
+
T Consensus 270 ~ 270 (271)
T TIGR02709 270 R 270 (271)
T ss_pred c
Confidence 4
No 68
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.32 E-value=2.8e+02 Score=25.18 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEe----HHHH---HHHHHhCCCCc
Q 017413 184 QASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVV----IDNC---CMMLVKNPAAF 256 (372)
Q Consensus 184 ~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~----vDa~---~~~Lv~~P~~f 256 (372)
.+....+++..+.. .|.+++.++.-. -.. ......+-+++..+++|++++.... -+.. +.++++....+
T Consensus 105 ~~g~~~~~~l~~~~--~g~~~i~~i~~~-~~~-~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (267)
T cd06322 105 AGGVLAGELAAKVL--NGKGQVAIIDYP-TVQ-SVVDRVRGFKEALADYPNIKIVAVQPGITRAEALTAAQNILQANPDL 180 (267)
T ss_pred HHHHHHHHHHHHHh--CCCceEEEEecC-CCc-cHHHHHHHHHHHHHhCCCcEEEEecCCCChHHHHHHHHHHHHhCCCC
Confidence 44444444444432 255677777532 222 2344556666666677777653221 1222 34566554578
Q ss_pred cEEEcCC
Q 017413 257 DVLVMPN 263 (372)
Q Consensus 257 dViv~~N 263 (372)
++|++.|
T Consensus 181 ~ai~~~~ 187 (267)
T cd06322 181 DGIFAFG 187 (267)
T ss_pred CEEEEcC
Confidence 9999887
No 69
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=36.15 E-value=2.3e+02 Score=25.68 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeee-----EeHH---HHHHHHHhCC
Q 017413 182 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEE-----VVID---NCCMMLVKNP 253 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~-----~~vD---a~~~~Lv~~P 253 (372)
........+++..+... |.+++.++.=..-.. +...+.+-+.+..++|+++++.. ...+ ..+.++.+.+
T Consensus 103 ~~~~~~~~~~~l~~~~~--g~~~i~~l~~~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (268)
T cd06323 103 NVAGGKMAAEYLVKLLG--GKGKVVELQGIPGAS-AARERGKGFHEVVDKYPGLKVVASQPADFDRAKGLNVMENILQAH 179 (268)
T ss_pred cHHHHHHHHHHHHHHhC--CCceEEEEeCCCCCc-cHHHHHHHHHHHHHhCCCcEEEecccCCCCHHHHHHHHHHHHHHC
Confidence 34445556665554431 456777664221111 23445566666666677665431 1112 2345677666
Q ss_pred CCccEEEcCC
Q 017413 254 AAFDVLVMPN 263 (372)
Q Consensus 254 ~~fdViv~~N 263 (372)
..+|.++|.|
T Consensus 180 ~~~~ai~~~~ 189 (268)
T cd06323 180 PDIKGVFAQN 189 (268)
T ss_pred CCcCEEEEcC
Confidence 6799888877
No 70
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=35.93 E-value=2.6e+02 Score=25.59 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=36.7
Q ss_pred CCCceEEEe-cCcccccchHHHHHHHHHHHhhCCCceeeeEe-----HH---HHHHHHHhCCCCccEEEcCCcchhhHHH
Q 017413 201 GRERVSAIH-KANIMQKTDGLFLKCCREVAEKYPEITYEEVV-----ID---NCCMMLVKNPAAFDVLVMPNLYGDIISD 271 (372)
Q Consensus 201 ~rk~Vt~v~-KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~-----vD---a~~~~Lv~~P~~fdViv~~NlfGDIlSD 271 (372)
|.+++.++. ..+.. +.....+-+.+..+++|++++.... .+ ....++++++.++|.|++.| |.++-
T Consensus 121 g~~~i~~l~~~~~~~--~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~---d~~a~ 195 (275)
T cd06320 121 EGGKVAIIEGKAGAF--AAEQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNN---DTMAL 195 (275)
T ss_pred CCceEEEEeCCCCCc--cHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEECC---chhHH
Confidence 556676653 22322 1223345566666666776643211 11 23446777666899999887 55554
Q ss_pred HH
Q 017413 272 LC 273 (372)
Q Consensus 272 la 273 (372)
.+
T Consensus 196 ~~ 197 (275)
T cd06320 196 GV 197 (275)
T ss_pred HH
Confidence 33
No 71
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=35.23 E-value=1.5e+02 Score=27.81 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeee-------EeHH---HHHHHHHhCCCCccEEE
Q 017413 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEE-------VVID---NCCMMLVKNPAAFDVLV 260 (372)
Q Consensus 191 r~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~-------~~vD---a~~~~Lv~~P~~fdViv 260 (372)
+.|.++..++|.+++.++.-.+-.. +...+.+-|++..+++ ++++.. .-.| ....++++.+..+|.|+
T Consensus 141 ~~a~~~l~~~G~~~I~~l~~~~~~~-~~~~R~~Gf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 218 (309)
T PRK11041 141 FEAVNYLHELGHKRIACIAGPEEMP-LCHYRLQGYVQALRRC-GITVDPQYIARGDFTFEAGAKALKQLLDLPQPPTAVF 218 (309)
T ss_pred HHHHHHHHHcCCceEEEEeCCcccc-chHHHHHHHHHHHHHc-CCCCCHHHeEeCCCCHHHHHHHHHHHHcCCCCCCEEE
Confidence 3455555556777888774332221 2234455556655543 232211 0112 24456777766899999
Q ss_pred cCCcchhhHH
Q 017413 261 MPNLYGDIIS 270 (372)
Q Consensus 261 ~~NlfGDIlS 270 (372)
|.| |.+.
T Consensus 219 ~~~---d~~a 225 (309)
T PRK11041 219 CHS---DVMA 225 (309)
T ss_pred EcC---cHHH
Confidence 876 5444
No 72
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=35.05 E-value=1.2e+02 Score=24.60 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=36.1
Q ss_pred EEEEEcCCCCcHHHHH-HHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcc
Q 017413 43 TATLFPGDGIGPEIAE-SVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPM 109 (372)
Q Consensus 43 ~I~vi~GDGiGpEv~~-~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~ 109 (372)
+|.++=|.|++..++. ..++.++.-+.+++++...++.. -+...++|.+|.+|-
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~Diil~~Pq 55 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESEL-------------EEYIDDADVVLLGPQ 55 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHH-------------HHhcCCCCEEEEChh
Confidence 4788889999999764 33344555588877766665421 123467899998873
No 73
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=35.04 E-value=67 Score=32.19 Aligned_cols=44 Identities=32% Similarity=0.425 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHH
Q 017413 192 YAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 244 (372)
Q Consensus 192 ~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa 244 (372)
||+|+|+ ||-+ |.++- + +..--..+..|+.++|+ |++....+|-
T Consensus 65 yA~eLAk-rG~n-vvLIs-----R-t~~KL~~v~kEI~~~~~-vev~~i~~Df 108 (312)
T KOG1014|consen 65 YARELAK-RGFN-VVLIS-----R-TQEKLEAVAKEIEEKYK-VEVRIIAIDF 108 (312)
T ss_pred HHHHHHH-cCCE-EEEEe-----C-CHHHHHHHHHHHHHHhC-cEEEEEEEec
Confidence 7999998 6775 66653 2 45556888889998887 8877766653
No 74
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=34.57 E-value=2.4e+02 Score=22.59 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEecCc
Q 017413 184 QASLRVAEYAFHYAKTHGRERVSAIHKAN 212 (372)
Q Consensus 184 ~~~eRiar~AFe~A~~r~rk~Vt~v~KaN 212 (372)
+.+++++++|+.+|++.+ .+|+++|=.+
T Consensus 10 ~~~~~~l~~a~~la~~~~-~~v~ll~v~~ 37 (132)
T cd01988 10 NTARDLLELAAALARAQN-GEIIPLNVIE 37 (132)
T ss_pred hhHHHHHHHHHHHhhcCC-CeEEEEEEEe
Confidence 678999999999998864 5777776443
No 75
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=34.02 E-value=35 Score=34.42 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=16.7
Q ss_pred CceEEEEEcCC--CCcHHHHHHH
Q 017413 40 TPITATLFPGD--GIGPEIAESV 60 (372)
Q Consensus 40 ~~~~I~vi~GD--GiGpEv~~~~ 60 (372)
++.+|++--|| ||||||+-.+
T Consensus 2 ~~p~iaIT~GDpaGIGpEii~ka 24 (332)
T PRK03743 2 KKPIIAIPIGDPAGIGPEIVVKT 24 (332)
T ss_pred CCCeEEEeCCCCcchHHHHHHHH
Confidence 44689999998 8999998433
No 76
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=33.55 E-value=86 Score=30.08 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCC-Cceee------eEeHHHHHHHHHhCCCCccEE
Q 017413 188 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYP-EITYE------EVVIDNCCMMLVKNPAAFDVL 259 (372)
Q Consensus 188 Riar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp-~I~~~------~~~vDa~~~~Lv~~P~~fdVi 259 (372)
.....||..-.+.++..+..+||.--.+..+||....-.-++. ||. +++.. ..+...+..-+=-+|++- ||
T Consensus 125 ~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~a-VM 203 (262)
T KOG3040|consen 125 QRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEA-VM 203 (262)
T ss_pred HHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHh-eE
Confidence 3456799999988777899999999999999998887776665 772 34332 345566666666778887 99
Q ss_pred EcCCcchhhHHHHHhhh
Q 017413 260 VMPNLYGDIISDLCAGL 276 (372)
Q Consensus 260 v~~NlfGDIlSDlaa~l 276 (372)
+-..+-+|+..-+..++
T Consensus 204 IGDD~~dDvgGAq~~GM 220 (262)
T KOG3040|consen 204 IGDDLNDDVGGAQACGM 220 (262)
T ss_pred EccccccchhhHhhhcc
Confidence 98777777655444433
No 77
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=33.44 E-value=1.6e+02 Score=23.85 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=40.3
Q ss_pred ceEEEEEcCCCCcHHHH--HHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECc
Q 017413 41 PITATLFPGDGIGPEIA--ESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGP 108 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~--~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~ 108 (372)
+++|.+.=|.|+|-..| ...+++++..|++++.+..+++. ++ ..+.++|+++.++
T Consensus 2 k~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e---------~~----~~~~~~D~iv~t~ 58 (94)
T PRK10310 2 KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE---------IE----TYMDGVHLICTTA 58 (94)
T ss_pred CCeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHH---------Hh----hhcCCCCEEEECC
Confidence 46899999999999887 45668888889998887766542 11 1235679887765
No 78
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=32.41 E-value=42 Score=34.87 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.5
Q ss_pred CccEEEeecCCCcccccceeeee
Q 017413 149 DVNLITIRENTEGEYSGLEHQVV 171 (372)
Q Consensus 149 ~iDivIvREnteG~Y~g~~~~~~ 171 (372)
..+|+|+|||||+.|.+.+....
T Consensus 124 ~~~i~i~R~~~~~~y~~iD~viv 146 (409)
T TIGR00127 124 EKPIIIGRHAFGDQYRATDFVVP 146 (409)
T ss_pred CCCeeeeccccCCCcCceEEEEe
Confidence 37899999999999999876543
No 79
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=31.59 E-value=2.9e+02 Score=27.61 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=55.2
Q ss_pred CCcHHHHHHHHhcCeEEECcccCCC---CCCCCcccHHHHHhhcceeee---------EeccCCC-------CCC-----
Q 017413 89 FLTWESLESVRRNKVGLKGPMATPI---GKGHRSLNLTLRKELNLYANV---------RPCYSLP-------GYK----- 144 (372)
Q Consensus 89 ~lp~etl~~i~~~da~L~g~~~~p~---~~~~~s~~~~LR~~ldlyanv---------RP~k~~p-------g~~----- 144 (372)
.-.++++++++++|.+++||- .|. .+.. ..-.+|+.|- =+.+ +|++..- |+.
T Consensus 174 ~a~p~vl~AI~~AD~IiiGPg-np~TSI~P~L--~v~gi~eAL~-~a~vV~Vsp~Ig~~~v~GPA~~lm~a~g~e~s~~g 249 (303)
T PRK13606 174 KPAPGVLEAIEEADAVIIGPS-NPVTSIGPIL--AVPGIREALT-EAPVVAVSPIIGGAPVSGPAAKLMAAIGVEVSAAG 249 (303)
T ss_pred CCCHHHHHHHHhCCEEEECCC-ccHHhhchhc--cchhHHHHHh-CCCEEEEcCCCCCCcCCChhHHHHHHcCCcchHHH
Confidence 357899999999999999994 231 1110 0124566661 1111 1222210 111
Q ss_pred --CcCCC-ccEEEeecCCCcc-cccceeeeeCCeEEEeecccHHHHHHHHHHHHHHHH
Q 017413 145 --TRYDD-VNLITIRENTEGE-YSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAK 198 (372)
Q Consensus 145 --~~~~~-iDivIvREnteG~-Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A~ 198 (372)
..|++ +|.+|+-+-.... -.|. .=....+.--+.+..+|+||+..+++.
T Consensus 250 va~~Y~~~~D~~vid~~D~~~~~~g~-----~v~~~~t~m~~~~~~~~la~~~l~~~~ 302 (303)
T PRK13606 250 VAEHYGDLLDGFVIDEADAAIEVPGV-----EVLRTDTLMTDPEDTARLARAILELAG 302 (303)
T ss_pred HHHhccccceEEEECCCccccccCCc-----eEEEeccCCCCHHHHHHHHHHHHHHhc
Confidence 11333 6877775444332 0010 012445556688999999999998874
No 80
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=31.57 E-value=3e+02 Score=27.81 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHHHHHHHhCCC-CceEEE---ecCcccccchHHHHHHHHHHHhhCC-Cceee-eEeHHHHHHH------H
Q 017413 182 TRQASLRVAEYAFHYAKTHGR-ERVSAI---HKANIMQKTDGLFLKCCREVAEKYP-EITYE-EVVIDNCCMM------L 249 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~r-k~Vt~v---~KaNvl~~tdglf~~~~~eva~eYp-~I~~~-~~~vDa~~~~------L 249 (372)
|-++...|+..|.+.|++-|- .||-++ ++.+--...-.-.++..+-+.+..| |..++ ++..|++... .
T Consensus 174 taeeladIa~~sa~~a~~fgi~PkVAlLS~St~gs~~~~~~~kv~ea~~i~~~~~~~dl~vDGelq~DaA~~~~va~~k~ 253 (327)
T COG0280 174 TAEELADIAENAAETARRFGIEPKVALLSYSTFGSGKGPSTDKVREATKILRERAPPDLEVDGELQFDAALVEKVAAKKA 253 (327)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCceEEEEeecCCCCCCccHHHHHHHHHHHHhcCCccceeccCcchhhhcCHHHHHhhC
Confidence 566777788888888887653 344443 3333211111122333332333567 77777 5778887642 2
Q ss_pred HhCCC--CccEEEcCCc-chhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCc
Q 017413 250 VKNPA--AFDVLVMPNL-YGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSA 303 (372)
Q Consensus 250 v~~P~--~fdViv~~Nl-fGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsAp 303 (372)
..+|- +=||+|.||| -|+|...++--+.|..-+.|=. .++=-|+|=..+
T Consensus 254 p~s~vaG~ANvlVfP~LeagNI~yK~lq~~~~a~avGPil-----~G~~kPV~~lSr 305 (327)
T COG0280 254 PDSPLAGSANVLVFPDLEAGNIGYKLLQRLGGALAVGPIL-----QGLAKPVNDLSR 305 (327)
T ss_pred CCCCcCCCCCEEEcCCchHHHHHHHHHHHhcCCceechhh-----hcCccchhhcCC
Confidence 22333 4679999999 5999999988887764333321 356668874444
No 81
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=31.43 E-value=1.2e+02 Score=29.04 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCCc-eEEEec-CcccccchHHHHHHHHHHHhhCCCceeeeEeH-------H---HHHHHHHhCCCCccE
Q 017413 191 EYAFHYAKTHGRER-VSAIHK-ANIMQKTDGLFLKCCREVAEKYPEITYEEVVI-------D---NCCMMLVKNPAAFDV 258 (372)
Q Consensus 191 r~AFe~A~~r~rk~-Vt~v~K-aNvl~~tdglf~~~~~eva~eYp~I~~~~~~v-------D---a~~~~Lv~~P~~fdV 258 (372)
+.|.++-.++|.++ +.++.- .+.....+.+ +=+++..+++ ++.++..++ + .++.+|++++..||.
T Consensus 107 ~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~--~Gy~~Al~~~-Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~ida 183 (279)
T PF00532_consen 107 YEATEYLIKKGHRRPIAFIGGPEDSSTSRERL--QGYRDALKEA-GLPIDEEWIFEGDFDYESGYEAARELLESHPDIDA 183 (279)
T ss_dssp HHHHHHHHHTTCCSTEEEEEESTTTHHHHHHH--HHHHHHHHHT-TSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SE
T ss_pred HHHHHHHHhcccCCeEEEEecCcchHHHHHHH--HHHHHHHHHc-CCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEE
Confidence 35666666777888 555443 2222111122 2233333333 332222222 1 346789999888999
Q ss_pred EEcCCcchhhHHHHH
Q 017413 259 LVMPNLYGDIISDLC 273 (372)
Q Consensus 259 iv~~NlfGDIlSDla 273 (372)
|+|.| |.++--+
T Consensus 184 i~~~n---d~~A~ga 195 (279)
T PF00532_consen 184 IFCAN---DMMAIGA 195 (279)
T ss_dssp EEESS---HHHHHHH
T ss_pred EEEeC---HHHHHHH
Confidence 99999 5555443
No 82
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=31.32 E-value=1.3e+02 Score=28.80 Aligned_cols=63 Identities=22% Similarity=0.277 Sum_probs=46.8
Q ss_pred HHHHHhCCCC-ceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHH-HHHhCCCCccEEE
Q 017413 194 FHYAKTHGRE-RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCM-MLVKNPAAFDVLV 260 (372)
Q Consensus 194 Fe~A~~r~rk-~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~-~Lv~~P~~fdViv 260 (372)
.+|+.+.+++ +|.+++--...+.|-.|| .+|.+.|+.|.++.|.-|++.- .++.+-..|-.+=
T Consensus 62 id~~~~~~~~~~l~~idT~~~~PeT~~l~----d~VekkY~~i~I~~~~pd~~e~ea~~~~K~~~~~~E 126 (261)
T KOG0189|consen 62 IDMLSKTGRPFRLFFIDTLHHFPETLRLF----DAVEKKYGNIRIHVYFPDAVEVEALFASKGGFSLWE 126 (261)
T ss_pred HHHHHHcCCCceeEEeeccccChHHHHHH----HHHHHhcCceEEEEEcchhHHHHHHHHhccchhhee
Confidence 4677666543 788888887777775554 5677899999999999999865 5787776664443
No 83
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=30.63 E-value=3.1e+02 Score=24.83 Aligned_cols=89 Identities=13% Similarity=0.134 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCcee------e-eEeHH---HHHHHHHhCCCCccE
Q 017413 189 VAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITY------E-EVVID---NCCMMLVKNPAAFDV 258 (372)
Q Consensus 189 iar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~------~-~~~vD---a~~~~Lv~~P~~fdV 258 (372)
-.+.|.++..++|.+++.++.- +--..+.....+-+.+..+++ ++.+ . ....| ..+.++++....+|+
T Consensus 105 ~g~~a~~~l~~~g~~~i~~i~~-~~~~~~~~~R~~Gf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (270)
T cd01545 105 AAREMTRHLIDLGHRRIAFIAG-PPDHRASAERLEGYRDALAEA-GLPLDPELVAQGDFTFESGLEAAEALLALPDRPTA 182 (270)
T ss_pred HHHHHHHHHHHCCCceEEEEeC-CCCchhHHHHHHHHHHHHHHc-CCCCChhhEEeCCCChhhHHHHHHHHHhCCCCCCE
Confidence 3345666666667788887752 211111111123344443332 1111 0 11122 334567765557999
Q ss_pred EEcCCcchhhHHHHHhhhcCCCCc
Q 017413 259 LVMPNLYGDIISDLCAGLIGGLGL 282 (372)
Q Consensus 259 iv~~NlfGDIlSDlaa~l~GglGl 282 (372)
|++.| |.+.-.+....-..|+
T Consensus 183 i~~~~---d~~a~~~~~~~~~~g~ 203 (270)
T cd01545 183 IFASN---DDMAAGVLAVAHRRGL 203 (270)
T ss_pred EEEcC---cHHHHHHHHHHHHcCC
Confidence 99887 4555444333344455
No 84
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=30.30 E-value=2e+02 Score=27.53 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=43.0
Q ss_pred ceEEEEEcCCCCcH-HHHHHHHHHHHhcCCC-eEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcc
Q 017413 41 PITATLFPGDGIGP-EIAESVKQVFRTAEVP-VEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPM 109 (372)
Q Consensus 41 ~~~I~vi~GDGiGp-Ev~~~~~~vl~a~~~~-i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~ 109 (372)
..+|++||-..-.| +..+...+.++.+|+. ++. .++.. -.+.-.++.++.++++|+++++--
T Consensus 28 ~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~--l~i~~-----r~~a~~~~~~~~l~~ad~I~~~GG 91 (250)
T TIGR02069 28 DAIIVIITSASEEPREVGERYITIFSRLGVKEVKI--LDVRE-----REDASDENAIALLSNATGIFFTGG 91 (250)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEE--EecCC-----hHHccCHHHHHHHhhCCEEEEeCC
Confidence 36999999655445 6677888889998874 443 44421 112345677899999999999763
No 85
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=30.12 E-value=3.7e+02 Score=24.59 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=36.8
Q ss_pred HHHHHHHHHhC--CCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeE-----eHH---HHHHHHHh-CCCCccE
Q 017413 190 AEYAFHYAKTH--GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV-----VID---NCCMMLVK-NPAAFDV 258 (372)
Q Consensus 190 ar~AFe~A~~r--~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~-----~vD---a~~~~Lv~-~P~~fdV 258 (372)
.+.+.++..++ |.+++.++.-..-.. ......+-+++..++++++..... -.+ ....++++ +|..+|.
T Consensus 110 g~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a 188 (273)
T cd06309 110 GRRAADWLAKATGGKGNIVELQGTVGSS-VAIDRKKGFAEVIKKYPNMKIVASQTGDFTRAKGKEVMEALLKAHGDDIDA 188 (273)
T ss_pred HHHHHHHHHHHcCCCceEEEEeCCCCCc-hHHHHHHHHHHHHHHCCCCEEeeccCCcccHHHHHHHHHHHHHhCCCCccE
Confidence 34444444443 566777764221111 223444555555556665543221 112 23445664 4657999
Q ss_pred EEcCC
Q 017413 259 LVMPN 263 (372)
Q Consensus 259 iv~~N 263 (372)
|++.|
T Consensus 189 I~~~~ 193 (273)
T cd06309 189 VYAHN 193 (273)
T ss_pred EEECC
Confidence 99987
No 86
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=30.04 E-value=31 Score=35.60 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=39.7
Q ss_pred hhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHH
Q 017413 267 DIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 346 (372)
Q Consensus 267 DIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~ 346 (372)
.=+||+-+.++||+| ++--|.||-|+. .+..||+..+-... .+++-|.+.+.
T Consensus 210 ST~sd~ys~i~agi~-----------aL~GPlHGGAne---------------~v~~ml~ei~~~~~--~~~~~v~~~l~ 261 (390)
T COG0372 210 STGSDLYACIAAGIG-----------ALKGPLHGGANE---------------AVMKMLEEIGSSGE--SAEAYVRKALD 261 (390)
T ss_pred hcCCcHHHHHHHHHH-----------HcCCCccCChHH---------------HHHHHHHHHcccch--hHHHHHHHHHh
Confidence 346777777777766 677899999998 67778888774321 17777777777
Q ss_pred cCC
Q 017413 347 EGK 349 (372)
Q Consensus 347 ~G~ 349 (372)
+|.
T Consensus 262 ~~~ 264 (390)
T COG0372 262 RKE 264 (390)
T ss_pred CCC
Confidence 763
No 87
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=29.85 E-value=2.7e+02 Score=25.39 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=14.8
Q ss_pred CcHHHHHHHHHHHHhcCCCeEE
Q 017413 52 IGPEIAESVKQVFRTAEVPVEW 73 (372)
Q Consensus 52 iGpEv~~~~~~vl~a~~~~i~~ 73 (372)
--.+++..+.+.++..|..+.+
T Consensus 13 ~~~~~~~g~~~~a~~~g~~~~~ 34 (268)
T cd06270 13 FFGPLLSGVESVARKAGKHLII 34 (268)
T ss_pred chHHHHHHHHHHHHHCCCEEEE
Confidence 3456777777777777766655
No 88
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=29.47 E-value=2.2e+02 Score=22.61 Aligned_cols=65 Identities=18% Similarity=0.076 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhh--CCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcch
Q 017413 192 YAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK--YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYG 266 (372)
Q Consensus 192 ~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~e--Yp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfG 266 (372)
.++.+|++.+..+|+.++.+. -..+.+++-.++ .+.+++. .-|.. ..+-..+..||++++.+-..
T Consensus 33 ~~~~l~~~~~~~~v~~vD~s~-------~~~~~a~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 33 ITIEAARLVPNGRVYAIERNP-------EALRLIERNARRFGVSNIVIV--EGDAP-EALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred HHHHHHHHCCCceEEEEcCCH-------HHHHHHHHHHHHhCCCceEEE--ecccc-ccChhhcCCCCEEEECCcch
Confidence 466667665446799988543 334444443333 3444332 22211 11223456899998866433
No 89
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=28.71 E-value=2.1e+02 Score=23.52 Aligned_cols=58 Identities=12% Similarity=0.020 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHH
Q 017413 185 ASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 244 (372)
Q Consensus 185 ~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa 244 (372)
+..+-.+-.|.-+.+++++-|...++.+-- .+..++.++++++++|+.|.+....+|.
T Consensus 6 ~~~~~~~~~~~~~l~~~~~vvv~f~a~wC~--~C~~~~~~l~~la~~~~~i~~~~vd~d~ 63 (113)
T cd02975 6 EDRKALKEEFFKEMKNPVDLVVFSSKEGCQ--YCEVTKQLLEELSELSDKLKLEIYDFDE 63 (113)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCCCCCC--ChHHHHHHHHHHHHhcCceEEEEEeCCc
Confidence 344555665666666643323333444432 4678889999999888888887776663
No 90
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.53 E-value=3.7e+02 Score=24.34 Aligned_cols=73 Identities=10% Similarity=0.060 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCC---Cc-eeeeEe--HH---HHHHHHHhCCCCccEEE
Q 017413 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYP---EI-TYEEVV--ID---NCCMMLVKNPAAFDVLV 260 (372)
Q Consensus 190 ar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp---~I-~~~~~~--vD---a~~~~Lv~~P~~fdViv 260 (372)
.+.+.++-.++|.++|.++.= +-...+...+.+-|++..+++. .. .+.... .+ .+..++++....+|+|+
T Consensus 110 g~~~~~~l~~~g~~~i~~i~~-~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 188 (270)
T cd06294 110 GYDATEYLIKLGHKKIAFVGG-DLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTAIV 188 (270)
T ss_pred HHHHHHHHHHcCCccEEEecC-CcccHHHHHHHHHHHHHHHHcCCCCCcceEEecCCchHHHHHHHHHHHhCCCCCCEEE
Confidence 344455555556778877752 2111123345566666666542 11 111111 11 23345666656899999
Q ss_pred cCC
Q 017413 261 MPN 263 (372)
Q Consensus 261 ~~N 263 (372)
|.|
T Consensus 189 ~~~ 191 (270)
T cd06294 189 ATD 191 (270)
T ss_pred ECC
Confidence 987
No 91
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=28.43 E-value=2.8e+02 Score=21.51 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEecCcccc--------cchHHHHHHHHHHHhh--CCCceeeeEeHHHH-HHHHH-
Q 017413 183 RQASLRVAEYAFHYAKTHGRERVSAIHKANIMQ--------KTDGLFLKCCREVAEK--YPEITYEEVVIDNC-CMMLV- 250 (372)
Q Consensus 183 r~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~--------~tdglf~~~~~eva~e--Yp~I~~~~~~vDa~-~~~Lv- 250 (372)
.+.+.+++++|.++|..++ .+++++|=..-.. ....-.++...++.+. ++++.+...+++.- ...|+
T Consensus 9 ~~~~~~~l~~a~~~a~~~~-~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (130)
T cd00293 9 SEESERALRWAARLARRLG-AELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILE 87 (130)
T ss_pred CHHHHHHHHHHHHHHHhcC-CEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHH
Confidence 4678889999999999874 6788776321111 0112334444454443 57787766654321 22232
Q ss_pred -hCCCCccEEEcCC
Q 017413 251 -KNPAAFDVLVMPN 263 (372)
Q Consensus 251 -~~P~~fdViv~~N 263 (372)
.+-.++|++|...
T Consensus 88 ~~~~~~~dlvvig~ 101 (130)
T cd00293 88 AAEELGADLIVMGS 101 (130)
T ss_pred HHHHcCCCEEEEcC
Confidence 2346688777654
No 92
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=28.34 E-value=36 Score=29.32 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=19.5
Q ss_pred CCceeEeccCCCCcccccCCCCCCh
Q 017413 290 EGGIALAEAVHGSAPDIAGKNLANP 314 (372)
Q Consensus 290 ~~~a~FEp~HGsApd~iaGk~iANP 314 (372)
....++-|.|||..| ++|+.+..|
T Consensus 82 ~~~~~~CPcHgs~Fd-l~G~~~~gP 105 (126)
T cd03470 82 DYGGFFCPCHGSHYD-ASGRIRKGP 105 (126)
T ss_pred CCCEEEecCcCCEEC-CCCeEecCC
Confidence 346789999999999 999876545
No 93
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=28.05 E-value=51 Score=33.29 Aligned_cols=21 Identities=38% Similarity=0.770 Sum_probs=16.6
Q ss_pred CceEEEEEcCC--CCcHHHHHHH
Q 017413 40 TPITATLFPGD--GIGPEIAESV 60 (372)
Q Consensus 40 ~~~~I~vi~GD--GiGpEv~~~~ 60 (372)
++.+|++--|| ||||||+-.+
T Consensus 3 ~~p~iaIT~GDpaGIGpEIi~ka 25 (332)
T PRK00232 3 MKPRIAITPGDPAGIGPELVAKL 25 (332)
T ss_pred CCCcEEEeCCCCcccHHHHHHHH
Confidence 44689999898 8999999443
No 94
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.94 E-value=3.6e+02 Score=24.51 Aligned_cols=77 Identities=12% Similarity=0.017 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeH-------H---HHHHHHHhC
Q 017413 183 RQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI-------D---NCCMMLVKN 252 (372)
Q Consensus 183 r~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~v-------D---a~~~~Lv~~ 252 (372)
....+..+++-++.. .|+++|-+++=.+. . +...-.+-+.+..++|+++.+...+. + ..+.++++.
T Consensus 103 ~~~g~~~~~~l~~~~--~g~~~i~~i~~~~~-~-~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (273)
T cd06305 103 YSLARLSLDQLVKDL--GGKGNVGYVNVAGF-P-PLDRRYDVWQAVLKAYPGIKEVAELGDVSNNTAQDAAAQVEAVLKK 178 (273)
T ss_pred HHHHHHHHHHHHHHh--CCCCCEEEEEccCC-c-hHHHHHHHHHHHHHHCCCcEEecccccccccchhHHHHHHHHHHHH
Confidence 444555555555543 34567766642111 1 12222344555556777554433221 1 223455655
Q ss_pred CCCc--cEEEcCC
Q 017413 253 PAAF--DVLVMPN 263 (372)
Q Consensus 253 P~~f--dViv~~N 263 (372)
.... +.|++.|
T Consensus 179 ~~~~~~~ai~~~~ 191 (273)
T cd06305 179 YPKGGIDAIWAAW 191 (273)
T ss_pred CCCcccCeEEEcC
Confidence 5556 8888886
No 95
>PLN02456 citrate synthase
Probab=27.54 E-value=47 Score=34.95 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=32.8
Q ss_pred eeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCC
Q 017413 293 IALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLG 356 (372)
Q Consensus 293 a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~Dlg 356 (372)
++.-|.||-|.+ .+.-||+.+|- .+.+++.|.+++++|. +-+=+|
T Consensus 288 aL~GPlHGGA~e---------------~v~~~l~ei~~---~~~v~~~v~~~l~~~~-~l~GFG 332 (455)
T PLN02456 288 ALAGPLHGGANE---------------AVLKMLKEIGT---VENIPEYVEGVKNSKK-VLPGFG 332 (455)
T ss_pred hcCCCcccChHH---------------HHHHHHHHhCC---HHHHHHHHHHHHhCCC-cccCCC
Confidence 688899999998 56677877763 3456888888888875 444444
No 96
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=27.02 E-value=4.9e+02 Score=23.74 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEe--------HHHHHHHHHhCCC
Q 017413 183 RQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVV--------IDNCCMMLVKNPA 254 (372)
Q Consensus 183 r~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~--------vDa~~~~Lv~~P~ 254 (372)
.......+++..+.. .|.+++.++.=..-.. ....+.+-+++..++++++.+.... .-.++.++++...
T Consensus 108 ~~~g~~~~~~l~~~~--~g~~~i~~i~~~~~~~-~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (272)
T cd06300 108 AEFGKQGAEWLVKEL--GGKGNVLVVRGLAGHP-VDEDRYAGAKEVLKEYPGIKIVGEVYGDWDQAVAQKAVADFLASNP 184 (272)
T ss_pred HHHHHHHHHHHHHHc--CCCceEEEEECCCCCc-chHHHHHHHHHHHHHCCCcEEEeecCCCCCHHHHHHHHHHHHHhCC
Confidence 344444444443322 1566776664211111 1223444555555566655443211 1234456665544
Q ss_pred CccEEEcCCcc
Q 017413 255 AFDVLVMPNLY 265 (372)
Q Consensus 255 ~fdViv~~Nlf 265 (372)
..|.|+|.|-.
T Consensus 185 ~~~~i~~~~d~ 195 (272)
T cd06300 185 DVDGIWTQGGD 195 (272)
T ss_pred CcCEEEecCCC
Confidence 78999988744
No 97
>PRK12350 citrate synthase 2; Provisional
Probab=26.79 E-value=52 Score=33.49 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=31.7
Q ss_pred eeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCC
Q 017413 293 IALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLG 356 (372)
Q Consensus 293 a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~Dlg 356 (372)
++.-|.||-|.. .+..||+.++- .+.+++.|.+.+++|. +-+=+|
T Consensus 197 aL~GplHGGA~e---------------~v~~ml~ei~~---~~~~~~~v~~~l~~~~-ri~GFG 241 (353)
T PRK12350 197 ALSGPLHGGAPA---------------RVLPMLDAVER---TGDARGWVKGALDRGE-RLMGFG 241 (353)
T ss_pred hcCCCcccChHH---------------HHHHHHHHhCC---hhhHHHHHHHHHHCCC-ccccCC
Confidence 677899999998 56667877764 3455777888888874 444444
No 98
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.74 E-value=4.8e+02 Score=24.10 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=67.2
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCCCceeeeEe-HHHHHHHHHhCCCCcc
Q 017413 180 IITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPEITYEEVV-IDNCCMMLVKNPAAFD 257 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp~I~~~~~~-vDa~~~~Lv~~P~~fd 257 (372)
.+.-+..+|++--|.+.|.+. ..|.++|---=|...+.-|++..+++.+ +-|=|..-|.- -|-...++ ++-...=
T Consensus 80 ~V~v~~le~i~~~al~rA~~~--aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~i-k~~~~v~ 156 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEE--ADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRI-KKLGGVY 156 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhc--CCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHh-hhcCCEE
Confidence 345688999999999999886 4799999988899899999999999986 55766666642 33233333 3322221
Q ss_pred EEEcCCcchhhHHHHHhhhcC
Q 017413 258 VLVMPNLYGDIISDLCAGLIG 278 (372)
Q Consensus 258 Viv~~NlfGDIlSDlaa~l~G 278 (372)
|++++---+-|+..+.+.|-|
T Consensus 157 v~lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 157 VFLTPENRNRILNEILSVLKG 177 (179)
T ss_pred EEEccchhhHHHHHHHHHhcc
Confidence 436765555777777766543
No 99
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.64 E-value=4.6e+02 Score=24.42 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCCceEEEe-cCcccccchHHHHHHHHHHHhhC---CCce-eee-EeHHH---HHHHHHhCCCCccEE
Q 017413 189 VAEYAFHYAKTHGRERVSAIH-KANIMQKTDGLFLKCCREVAEKY---PEIT-YEE-VVIDN---CCMMLVKNPAAFDVL 259 (372)
Q Consensus 189 iar~AFe~A~~r~rk~Vt~v~-KaNvl~~tdglf~~~~~eva~eY---p~I~-~~~-~~vDa---~~~~Lv~~P~~fdVi 259 (372)
.++.|.++-.++|.+++-++. ..+.. ...-+.+-+++..+++ +.+. +.. .-.+. ...++++.+..+|.|
T Consensus 105 ~~~~a~~~L~~~G~~~I~~i~~~~~~~--~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 182 (269)
T cd06287 105 TARMLLEHLRAQGARQIALIVGSARRN--SYLEAEAAYRAFAAEHGMPPVVLRVDEAGGEEAGYAACAQLLAQHPDLDAL 182 (269)
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCcccc--cHHHHHHHHHHHHHHcCCCcceeEecCCCChHHHHHHHHHHHhCCCCCCEE
Confidence 345556666667777777763 33322 1112233344433332 1111 110 11122 334566655578999
Q ss_pred EcCC
Q 017413 260 VMPN 263 (372)
Q Consensus 260 v~~N 263 (372)
+|.|
T Consensus 183 ~~~~ 186 (269)
T cd06287 183 CVPV 186 (269)
T ss_pred EEcC
Confidence 9987
No 100
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=25.31 E-value=56 Score=32.98 Aligned_cols=18 Identities=44% Similarity=0.735 Sum_probs=15.0
Q ss_pred CceEEEEEcCC--CCcHHHH
Q 017413 40 TPITATLFPGD--GIGPEIA 57 (372)
Q Consensus 40 ~~~~I~vi~GD--GiGpEv~ 57 (372)
.+.+|++-.|| ||||||+
T Consensus 2 ~~~~iAit~GDPaGIGPEi~ 21 (332)
T COG1995 2 TKPRIAITMGDPAGIGPELV 21 (332)
T ss_pred CCCceEecCCCcccCCHHHH
Confidence 45689999998 8999994
No 101
>PRK11890 phosphate acetyltransferase; Provisional
Probab=25.08 E-value=5.6e+02 Score=25.68 Aligned_cols=97 Identities=21% Similarity=0.286 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CceEEE---ecCcc-cccchHHHHHHHHHHH-hhCCCceee-eEeHHHHHHH-H--H
Q 017413 182 TRQASLRVAEYAFHYAKTHGR--ERVSAI---HKANI-MQKTDGLFLKCCREVA-EKYPEITYE-EVVIDNCCMM-L--V 250 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~r--k~Vt~v---~KaNv-l~~tdglf~~~~~eva-~eYp~I~~~-~~~vDa~~~~-L--v 250 (372)
|-+.-..|+..|.+.|+.-|- .||-++ +|.|- ++.+ .--.+.++.-. .++|+..++ ++..|++.-. . .
T Consensus 154 ~~eq~a~I~~~a~~~a~~lG~~~PkVA~LS~se~~~~~~~~t-~~aa~L~k~~~~~~~~~~~vdGplq~D~A~~~~~a~~ 232 (312)
T PRK11890 154 TLEDKADIVQNAIDLAHALGFDEPRVAILSAVETVNPKIPST-LDAAALCKMADRGQITGAILDGPLAFDNAISPEAARI 232 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEeeecCCCCCCchH-HHHHHHHHHHhcCcCCCcEEEcCccHHHhCCHHHHHh
Confidence 667777889999999988754 455544 33331 1111 01111122111 148998777 5667877432 1 2
Q ss_pred hCC-----CCccEEEcCCc-chhhHHHHHhhhcCC
Q 017413 251 KNP-----AAFDVLVMPNL-YGDIISDLCAGLIGG 279 (372)
Q Consensus 251 ~~P-----~~fdViv~~Nl-fGDIlSDlaa~l~Gg 279 (372)
+-| ++-||+|.||+ -|||+.-+...+.|+
T Consensus 233 K~~~s~vaG~AnvLIfPnl~agNi~yK~l~~~~~~ 267 (312)
T PRK11890 233 KGIVSPVAGDADILVVPDLEAGNMLAKQLTFLAGA 267 (312)
T ss_pred hCCCCCCCCcCCEEEeCCcHHHHHHHHHHHHhcCC
Confidence 222 35789999998 699999888777654
No 102
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=24.74 E-value=63 Score=32.69 Aligned_cols=20 Identities=50% Similarity=0.619 Sum_probs=16.0
Q ss_pred ceEEEEEcCC--CCcHHHHHHH
Q 017413 41 PITATLFPGD--GIGPEIAESV 60 (372)
Q Consensus 41 ~~~I~vi~GD--GiGpEv~~~~ 60 (372)
+.+|++-.|| ||||||+-.+
T Consensus 3 ~p~iaIT~GDpaGIGpEii~ka 24 (336)
T PRK05312 3 MRPLALSLGDPAGIGPEIALKA 24 (336)
T ss_pred CCeEEEeCCCCcchHHHHHHHH
Confidence 4589999998 8999998433
No 103
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.70 E-value=4.6e+02 Score=24.24 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEe-cCcccccchHHHHHHHHHHHhhCCCceeeeEe-----HH---HHHHHHHhCC
Q 017413 183 RQASLRVAEYAFHYAKTHGRERVSAIH-KANIMQKTDGLFLKCCREVAEKYPEITYEEVV-----ID---NCCMMLVKNP 253 (372)
Q Consensus 183 r~~~eRiar~AFe~A~~r~rk~Vt~v~-KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~-----vD---a~~~~Lv~~P 253 (372)
+...+..+++-.+.. .|.++|-++. ..+.. ......+-+++..++++++++.... .+ ....++++..
T Consensus 106 ~~~g~~~~~~l~~~~--~g~~~i~~l~g~~~~~--~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (272)
T cd06313 106 YFMGASVAQALCNAM--GGKGKIAMLQGALGHT--GAQGRAQGFNDVIKKYPDIEVVDEQPANWDVSKAARIWETWLTKY 181 (272)
T ss_pred HHHHHHHHHHHHHHc--CCCceEEEEECCCCCc--chhHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHHHHHhC
Confidence 444555555544432 1555776664 22221 2334556666666667655432211 11 1233455443
Q ss_pred CCccEEEcCCcchhhHHHHH
Q 017413 254 AAFDVLVMPNLYGDIISDLC 273 (372)
Q Consensus 254 ~~fdViv~~NlfGDIlSDla 273 (372)
..+|+|+|.| |.++--+
T Consensus 182 ~~~~ai~~~n---d~~a~g~ 198 (272)
T cd06313 182 PQLDGAFCHN---DSMALAA 198 (272)
T ss_pred CCCCEEEECC---CcHHHHH
Confidence 3699999988 4444333
No 104
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=24.41 E-value=4.2e+02 Score=23.40 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeE-----eHH---HHHHHHHhCCCCccEEE
Q 017413 189 VAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV-----VID---NCCMMLVKNPAAFDVLV 260 (372)
Q Consensus 189 iar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~-----~vD---a~~~~Lv~~P~~fdViv 260 (372)
..+.+.+++.+.+.++|.+++-.+-.. ....+.+-+++..++++++..... -.+ ....++++.-.+.|+++
T Consensus 105 ~~~~~~~~l~~~g~~~i~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 183 (264)
T cd01537 105 AGYLAGEHLAEKGHRRIALLAGPLGSS-TARERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIF 183 (264)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCCCCC-cHHHHHHHHHHHHHHcCCcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 445666666666677888876543322 233444555554444432221111 112 23345665533788888
Q ss_pred cCC
Q 017413 261 MPN 263 (372)
Q Consensus 261 ~~N 263 (372)
+.|
T Consensus 184 ~~~ 186 (264)
T cd01537 184 AAN 186 (264)
T ss_pred EcC
Confidence 887
No 105
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=24.40 E-value=4.6e+02 Score=26.25 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=38.3
Q ss_pred HHHHHHhCCCCceEEEecCc-----ccccchHHHHH-----------H-HHHHHhhCCCceeeeEeHHH---HHHHHHhC
Q 017413 193 AFHYAKTHGRERVSAIHKAN-----IMQKTDGLFLK-----------C-CREVAEKYPEITYEEVVIDN---CCMMLVKN 252 (372)
Q Consensus 193 AFe~A~~r~rk~Vt~v~KaN-----vl~~tdglf~~-----------~-~~eva~eYp~I~~~~~~vDa---~~~~Lv~~ 252 (372)
|-.+|+ .|-.+++++|... .-++ -||.+ . .+.+.+-+|+++++....|. -...++
T Consensus 40 a~~La~-aGvg~i~lvD~D~ve~sNL~RQ--~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~-- 114 (338)
T PRK12475 40 AEALVR-AGIGKLTIADRDYVEWSNLQRQ--QLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELV-- 114 (338)
T ss_pred HHHHHH-cCCCEEEEEcCCcccccccCcc--ccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh--
Confidence 334444 3567899888754 3322 12211 1 23344557999887765432 223344
Q ss_pred CCCccEEEc--CCcchhh-HHHHHh
Q 017413 253 PAAFDVLVM--PNLYGDI-ISDLCA 274 (372)
Q Consensus 253 P~~fdViv~--~NlfGDI-lSDlaa 274 (372)
.+||+||. .|..-.+ ++|+|.
T Consensus 115 -~~~DlVid~~D~~~~r~~in~~~~ 138 (338)
T PRK12475 115 -KEVDLIIDATDNFDTRLLINDLSQ 138 (338)
T ss_pred -cCCCEEEEcCCCHHHHHHHHHHHH
Confidence 46896543 3433322 445553
No 106
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=24.25 E-value=1e+02 Score=31.01 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=34.1
Q ss_pred CcHHHHHHHHhcCeEEECcccCCC---CCC--CCcccHHHHHhhcceeeeEeccCCCC
Q 017413 90 LTWESLESVRRNKVGLKGPMATPI---GKG--HRSLNLTLRKELNLYANVRPCYSLPG 142 (372)
Q Consensus 90 lp~etl~~i~~~da~L~g~~~~p~---~~~--~~s~~~~LR~~ldlyanvRP~k~~pg 142 (372)
-+++++++++++|.++.||- +|. .+. ....--+||+.---+..+.++...||
T Consensus 179 a~~eaveAI~~AD~IviGPg-Sl~TSIlP~Lllp~I~eaLr~~~ap~i~v~n~~~~~g 235 (323)
T COG0391 179 AAPEAVEAIKEADLIVIGPG-SLFTSILPILLLPGIAEALRETVAPIVYVCNLMTQAG 235 (323)
T ss_pred CCHHHHHHHHhCCEEEEcCC-ccHhhhchhhchhHHHHHHHhCCCCEEEeccCCCCCC
Confidence 47899999999999999994 221 111 11223467775556666667666666
No 107
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.24 E-value=3.6e+02 Score=24.37 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEe-cCcccccchHHHHHHHHHHHhhCC-Cceee---e--EeHH---HHHHHHHhCCCCcc
Q 017413 188 RVAEYAFHYAKTHGRERVSAIH-KANIMQKTDGLFLKCCREVAEKYP-EITYE---E--VVID---NCCMMLVKNPAAFD 257 (372)
Q Consensus 188 Riar~AFe~A~~r~rk~Vt~v~-KaNvl~~tdglf~~~~~eva~eYp-~I~~~---~--~~vD---a~~~~Lv~~P~~fd 257 (372)
..++.|.++..++|.+++-++. ..+. .....+.+-+.+..+++. ++... . .-.+ ....+++++...+|
T Consensus 102 ~~~~~a~~~l~~~g~~~i~~l~~~~~~--~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (269)
T cd06288 102 QGGYDATRHLLAAGHRRIAFINGEPWM--LAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPT 179 (269)
T ss_pred HHHHHHHHHHHHcCCceEEEEeCCccc--hhHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCC
Confidence 3345566666666777887774 2221 122344555566555542 21111 1 1111 23345665544799
Q ss_pred EEEcCC
Q 017413 258 VLVMPN 263 (372)
Q Consensus 258 Viv~~N 263 (372)
.|++.|
T Consensus 180 ai~~~~ 185 (269)
T cd06288 180 AIFCGN 185 (269)
T ss_pred EEEEeC
Confidence 998887
No 108
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=23.98 E-value=60 Score=29.19 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHHHHhhhcCCCCcccccc-cCCCceeEeccCCCCcccccCCCCCCh
Q 017413 269 ISDLCAGLIGGLGLTPSCN-IGEGGIALAEAVHGSAPDIAGKNLANP 314 (372)
Q Consensus 269 lSDlaa~l~GglGl~pSan-ig~~~a~FEp~HGsApd~iaGk~iANP 314 (372)
+|.+|.. ||-.|+.| -+.+..+|-|+|||--| ..|+-+-.|
T Consensus 104 ~~~iCtH----lGC~~~~~~~~~~~~~~CPCHGS~yd-~~g~vv~GP 145 (177)
T COG0723 104 YSAICTH----LGCTVPWNNAGAEGGFFCPCHGSRYD-PDGGVVKGP 145 (177)
T ss_pred EeeeccC----CCCccCcccCCCCCeEEccCCCCeEc-CCCCeeCCC
Confidence 3444444 56677775 33446789999999999 888854443
No 109
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=23.96 E-value=1e+02 Score=25.46 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhC
Q 017413 182 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 232 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eY 232 (372)
-....|||.|.|.+ -|--. |..+|.=|..+|+||++.|
T Consensus 22 e~keaERigr~AlK----aGL~e---------ieI~d~eL~~~FeeIa~RF 59 (92)
T PF07820_consen 22 ETKEAERIGRIALK----AGLGE---------IEISDAELQAAFEEIAARF 59 (92)
T ss_pred HHHHHHHHHHHHHH----ccccc---------ccCCHHHHHHHHHHHHHHH
Confidence 45678899988754 33211 2357889999999999987
No 110
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=23.79 E-value=5.1e+02 Score=23.36 Aligned_cols=52 Identities=8% Similarity=-0.042 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHH--HhcCeEEECcccC
Q 017413 53 GPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMAT 111 (372)
Q Consensus 53 GpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i--~~~da~L~g~~~~ 111 (372)
-.+++...++.++..+..+.+...+- .+ ..-..+.++.+ .+.|+++..+...
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~l~~~~vdgiii~~~~~ 67 (264)
T cd01574 14 PSSTLAAIESAAREAGYAVTLSMLAE----AD---EEALRAAVRRLLAQRVDGVIVNAPLD 67 (264)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeCCC----Cc---hHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 35677777777777776665532211 00 01122334444 3578888766443
No 111
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.51 E-value=5.6e+02 Score=23.43 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=32.1
Q ss_pred CCCceEEEe-cCcccccchHHHHHHHHHHHhhCCCceeeeE-eH----H---HHHHHHHhCCCCccEEEcCC
Q 017413 201 GRERVSAIH-KANIMQKTDGLFLKCCREVAEKYPEITYEEV-VI----D---NCCMMLVKNPAAFDVLVMPN 263 (372)
Q Consensus 201 ~rk~Vt~v~-KaNvl~~tdglf~~~~~eva~eYp~I~~~~~-~v----D---a~~~~Lv~~P~~fdViv~~N 263 (372)
|.++|.++. -.+ . ......+-+.+.-++|| +++... .. + ....++++...++|.|+|.|
T Consensus 126 g~~~i~~~~g~~~-~--~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 193 (274)
T cd06311 126 GNGNIVVLRGIPT-P--IDNERVDAFDAAIAKYP-IKILDRQYANWNRDDAFSVMQDLLTKFPKIDAVWAHD 193 (274)
T ss_pred CCCeEEEEECCCC-c--chhHHHHHHHHHHhhCC-cEEEeccCCCCcHHHHHHHHHHHHHhCCCcCEEEECC
Confidence 556776664 222 2 23445566777666777 544321 11 1 12335555433689999987
No 112
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=23.20 E-value=2.1e+02 Score=24.25 Aligned_cols=82 Identities=15% Similarity=0.068 Sum_probs=51.5
Q ss_pred EEEEEcC----CCCcHHHHHHHHHHHHhcCCCeEEEEEEeeccc---cc------ccCCCCcHHHHHHHHhcCeEEECcc
Q 017413 43 TATLFPG----DGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEI---DP------RTQSFLTWESLESVRRNKVGLKGPM 109 (372)
Q Consensus 43 ~I~vi~G----DGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~---~~------~~g~~lp~etl~~i~~~da~L~g~~ 109 (372)
+|.+|-| +|....+++++.+.++..++++ +.+++.... .+ -.-..-.++..+.++++|+++++.
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~--~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s- 78 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEV--EVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS- 78 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEE--EEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE-
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEE--EEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee-
Confidence 5666644 4778889999989888886444 446665320 00 011223466678899999999876
Q ss_pred cCCCCCCCCcccHHHHHhhcce
Q 017413 110 ATPIGKGHRSLNLTLRKELNLY 131 (372)
Q Consensus 110 ~~p~~~~~~s~~~~LR~~ldly 131 (372)
|... .+....+..-||..
T Consensus 79 --P~y~--~~~s~~lK~~lD~~ 96 (152)
T PF03358_consen 79 --PVYN--GSVSGQLKNFLDRL 96 (152)
T ss_dssp --EEBT--TBE-HHHHHHHHTH
T ss_pred --cEEc--CcCChhhhHHHHHh
Confidence 3211 24567788888844
No 113
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=22.60 E-value=1.4e+02 Score=25.98 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=29.3
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEE
Q 017413 49 GDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLK 106 (372)
Q Consensus 49 GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~ 106 (372)
=||+|+.|+++..+ ...+-+++-++.| ..+.+.+..++++|.+++
T Consensus 13 DDG~G~~v~~~L~~----~~~~~~v~~id~g---------t~~~~l~~~l~~~d~vIi 57 (146)
T cd06063 13 DDGVGPILIRRLQA----YLLPPHVRLVDCG---------TAGMEVMFRARGAKQLII 57 (146)
T ss_pred cCcHHHHHHHHHhh----cCCCCCeEEEECC---------CCHHHHHHHhcCCCEEEE
Confidence 37899999866543 2233234445554 357788888889888765
No 114
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=22.02 E-value=4.1e+02 Score=24.15 Aligned_cols=60 Identities=18% Similarity=0.128 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhh--CCCceeeeEeHHHHHHHHHhCCCCccEEEcCC
Q 017413 192 YAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK--YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263 (372)
Q Consensus 192 ~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~e--Yp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~N 263 (372)
.++.+|+..+..+||.+++.-- +.+.+++.+++ .+++++ ..-|..- +-. +..||+|++..
T Consensus 59 ~al~la~~~~~~~V~giD~s~~-------~l~~A~~~~~~~~l~~i~~--~~~d~~~--~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 59 PGIPLAIARPELKVTLVDSLGK-------KIAFLREVAAELGLKNVTV--VHGRAEE--FGQ-EEKFDVVTSRA 120 (187)
T ss_pred HHHHHHHHCCCCeEEEEeCcHH-------HHHHHHHHHHHcCCCCEEE--EeccHhh--CCC-CCCccEEEEcc
Confidence 3566666554568999885433 33444444332 334444 3334322 222 56799888754
No 115
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=21.78 E-value=4.5e+02 Score=23.80 Aligned_cols=24 Identities=4% Similarity=0.091 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEE
Q 017413 50 DGIGPEIAESVKQVFRTAEVPVEW 73 (372)
Q Consensus 50 DGiGpEv~~~~~~vl~a~~~~i~~ 73 (372)
|---.++.....+.++..|..+.+
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~ 34 (268)
T cd06273 11 NAIFARVIQAFQETLAAHGYTLLV 34 (268)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEE
Confidence 445566777777777777755554
No 116
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.62 E-value=1.8e+02 Score=25.27 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=36.7
Q ss_pred EEEEEcCCC--CcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhc--CeEEECcccCC
Q 017413 43 TATLFPGDG--IGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRN--KVGLKGPMATP 112 (372)
Q Consensus 43 ~I~vi~GDG--iGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~--da~L~g~~~~p 112 (372)
-++.+.||+ +|..++. ..|+..|+ +-+++|... -|++.++++++. |++...++.+.
T Consensus 3 vigtv~gD~HdiGkniv~---~~L~~~Gf----eVidLG~~v-------~~e~~v~aa~~~~adiVglS~L~t~ 62 (128)
T cd02072 3 VLGVIGSDCHAVGNKILD---HAFTEAGF----NVVNLGVLS-------PQEEFIDAAIETDADAILVSSLYGH 62 (128)
T ss_pred EEEEeCCchhHHHHHHHH---HHHHHCCC----EEEECCCCC-------CHHHHHHHHHHcCCCEEEEeccccC
Confidence 467788998 9998775 46777763 336666432 257777888774 55666666554
No 117
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=21.43 E-value=2e+02 Score=26.48 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=28.7
Q ss_pred HHHHHH-HHHHhhCCCceeeeEeH--HHHHH----HHHhCCCCccEEEc
Q 017413 220 LFLKCC-REVAEKYPEITYEEVVI--DNCCM----MLVKNPAAFDVLVM 261 (372)
Q Consensus 220 lf~~~~-~eva~eYp~I~~~~~~v--Da~~~----~Lv~~P~~fdViv~ 261 (372)
.|.+.+ ++..+++|+|+++...+ ++... .+...-..+||+.+
T Consensus 9 ~~~~~~~~~f~k~~~~i~V~~~~~~~~~~~~~~~~~~~sg~~p~Dv~~~ 57 (315)
T PF01547_consen 9 ALQELIIEEFEKEHPGIKVEIEFIPWDDYQQKLNTALASGDAPYDVIFI 57 (315)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEETHHHHHHHHHHHHHTTGSSESEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCccHHHHHHHHHHcCCChhheEEe
Confidence 667777 77777799999998887 33322 33444334599988
No 118
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=21.20 E-value=3.7e+02 Score=27.02 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHHHHHh-CC--CCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeE-eHHHHHHHHHhCCCCcc
Q 017413 182 TRQASLRVAEYAFHYAKT-HG--RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV-VIDNCCMMLVKNPAAFD 257 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~-r~--rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~-~vDa~~~~Lv~~P~~fd 257 (372)
|.+...+||..+-.+|+. -| ..||-+..=...-..+...-++.++-+.+.+|++.|.-. --+ .|.. +..|
T Consensus 151 ~~e~L~~~A~~~a~~a~~~~Gi~~PrVAlLn~Gse~~kg~~~~~eA~~Ll~~~~~~l~f~G~ie~~----dl~~--g~~D 224 (334)
T PRK05331 151 KPEHLVQFAVMGSVYAEAVLGIENPRVGLLNIGEEEIKGNELVKEAYELLKAADSSINFIGNVEGR----DILK--GTAD 224 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCCCHHHHHHHHHHHccCCCceEEeeccCC----CcCC--CCCC
Confidence 445555666666699975 34 357766631111111234555555544445678776533 111 1221 4589
Q ss_pred EEEcCCcchhhHHHHH
Q 017413 258 VLVMPNLYGDIISDLC 273 (372)
Q Consensus 258 Viv~~NlfGDIlSDla 273 (372)
|+||.-.-|||+=-.+
T Consensus 225 VvV~DGftGNv~LK~~ 240 (334)
T PRK05331 225 VVVCDGFVGNVALKTS 240 (334)
T ss_pred EEEECCchhHHHHHHH
Confidence 9999999999875544
No 119
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=20.97 E-value=5.9e+02 Score=22.71 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEe-H----H---HHHHHHHhCCC
Q 017413 183 RQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVV-I----D---NCCMMLVKNPA 254 (372)
Q Consensus 183 r~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~-v----D---a~~~~Lv~~P~ 254 (372)
....+.++++..+.. +|.+++.++.-.+-.. +...+.+-+++..++..++.+.... . + ....++++...
T Consensus 104 ~~~~~~~~~~l~~~~--~g~~~i~~i~~~~~~~-~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (267)
T cd01536 104 YEAGRLAGEYLAKLL--GGKGKVAIIEGPPGSS-NAQERVKGFRDALKEYPDIEIVAVQDGNWDREKALQAMEDLLQANP 180 (267)
T ss_pred HHHHHHHHHHHHHHh--CCCceEEEEEcccccc-hHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCC
Confidence 344444444443322 1566777664322211 2334566666665554334432221 1 1 24456666544
Q ss_pred CccEEEcCC
Q 017413 255 AFDVLVMPN 263 (372)
Q Consensus 255 ~fdViv~~N 263 (372)
.+++|++.|
T Consensus 181 ~~~~i~~~~ 189 (267)
T cd01536 181 DIDAIFAAN 189 (267)
T ss_pred CccEEEEec
Confidence 689888887
Done!