Query 017413
Match_columns 372
No_of_seqs 137 out of 1285
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x0l_A Homoisocitrate dehydrog 100.0 5E-117 2E-121 868.4 33.8 328 41-372 1-330 (333)
2 3blx_B Isocitrate dehydrogenas 100.0 8E-117 3E-121 872.3 30.1 336 35-372 15-354 (354)
3 3ty4_A Probable homoisocitrate 100.0 2E-115 6E-120 865.6 33.5 331 39-372 8-364 (366)
4 3blx_A Isocitrate dehydrogenas 100.0 6E-116 2E-120 864.6 26.8 332 36-372 12-346 (349)
5 3flk_A Tartrate dehydrogenase/ 100.0 2E-115 6E-120 866.3 28.8 331 40-372 4-360 (364)
6 3udu_A 3-isopropylmalate dehyd 100.0 7E-114 2E-118 852.7 31.3 329 39-372 4-355 (361)
7 2d1c_A Isocitrate dehydrogenas 100.0 4E-113 1E-117 871.5 35.2 336 35-372 14-355 (496)
8 1wpw_A 3-isopropylmalate dehyd 100.0 3E-113 1E-117 842.3 32.2 323 42-372 2-335 (336)
9 3u1h_A 3-isopropylmalate dehyd 100.0 2E-113 8E-118 853.9 32.0 328 41-372 23-376 (390)
10 2y3z_A 3-isopropylmalate dehyd 100.0 5E-113 2E-117 846.3 31.8 327 40-372 2-347 (359)
11 3vmk_A 3-isopropylmalate dehyd 100.0 4E-113 1E-117 850.6 30.8 331 38-372 10-371 (375)
12 1vlc_A 3-isopropylmalate dehyd 100.0 5E-113 2E-117 847.8 29.0 327 41-372 12-362 (366)
13 3dms_A Isocitrate dehydrogenas 100.0 1E-112 5E-117 860.3 30.2 331 40-372 35-426 (427)
14 1cnz_A IPMDH, IMDH, protein (3 100.0 2E-112 8E-117 844.1 30.4 329 40-372 3-359 (363)
15 1w0d_A 3-isopropylmalate dehyd 100.0 6E-112 2E-116 833.6 32.3 322 42-372 2-337 (337)
16 2e0c_A 409AA long hypothetical 100.0 6E-112 2E-116 852.5 30.1 330 41-372 24-406 (409)
17 2iv0_A Isocitrate dehydrogenas 100.0 5E-112 2E-116 853.0 29.7 330 41-372 27-409 (412)
18 3r8w_A 3-isopropylmalate dehyd 100.0 5E-112 2E-116 849.0 28.1 329 40-372 41-397 (405)
19 1a05_A IPMDH, IMDH, 3-isopropy 100.0 5E-111 2E-115 833.7 31.5 327 42-372 2-354 (358)
20 2d4v_A Isocitrate dehydrogenas 100.0 5E-111 2E-115 848.7 31.3 330 41-372 26-429 (429)
21 1hqs_A Isocitrate dehydrogenas 100.0 8E-111 3E-115 846.8 30.2 330 41-372 19-422 (423)
22 1tyo_A Isocitrate dehydrogenas 100.0 2E-110 7E-115 845.5 30.3 330 40-372 34-421 (435)
23 3us8_A Isocitrate dehydrogenas 100.0 1E-105 4E-110 810.2 24.7 335 33-372 22-421 (427)
24 2uxq_A Isocitrate dehydrogenas 100.0 2E-104 6E-109 798.3 26.2 329 39-372 4-397 (402)
25 1lwd_A Isocitrate dehydrogenas 100.0 2E-102 6E-107 786.2 25.0 331 37-372 4-406 (413)
26 1zor_A Isocitrate dehydrogenas 100.0 3E-102 1E-106 781.3 25.3 334 35-372 1-395 (399)
27 4aoy_A Isocitrate dehydrogenas 100.0 2E-101 5E-106 774.7 25.3 334 35-372 1-398 (402)
28 2qfy_A Isocitrate dehydrogenas 100.0 2E-100 5E-105 774.2 19.5 332 36-372 17-419 (427)
29 2b0t_A NADP isocitrate dehydro 97.4 0.003 1E-07 65.2 16.0 188 167-357 443-649 (738)
30 1itw_A Isocitrate dehydrogenas 97.4 0.0029 1E-07 65.3 15.9 188 167-357 447-653 (741)
31 3lxy_A 4-hydroxythreonine-4-ph 96.9 0.0078 2.7E-07 58.9 12.0 134 180-326 179-327 (334)
32 2hi1_A 4-hydroxythreonine-4-ph 95.1 0.035 1.2E-06 54.2 7.0 134 180-326 181-328 (330)
33 4aty_A Terephthalate 1,2-CIS-d 93.6 0.039 1.3E-06 54.2 3.4 131 180-326 196-340 (349)
34 1yxo_A 4-hydroxythreonine-4-ph 93.5 0.04 1.4E-06 53.7 3.4 134 180-326 174-322 (328)
35 3tsn_A 4-hydroxythreonine-4-ph 91.8 0.09 3.1E-06 51.9 3.3 78 240-326 282-362 (367)
36 1u7n_A Fatty acid/phospholipid 81.3 9.4 0.00032 36.8 10.7 134 181-327 150-318 (336)
37 1vi1_A Fatty acid/phospholipid 76.0 15 0.00052 35.5 10.4 147 181-341 148-328 (345)
38 2af4_C Phosphate acetyltransfe 75.4 11 0.00038 36.2 9.1 98 181-278 178-290 (333)
39 1td9_A Phosphate acetyltransfe 73.4 15 0.00051 35.2 9.5 99 180-278 178-290 (329)
40 1e2b_A Enzyme IIB-cellobiose; 70.1 18 0.00062 28.8 7.9 70 40-129 2-72 (106)
41 3uf6_A LMO1369 protein; struct 69.4 26 0.0009 33.1 10.0 210 32-278 7-252 (291)
42 1r5j_A Putative phosphotransac 69.0 19 0.00066 34.4 9.2 98 181-278 183-294 (337)
43 3cis_A Uncharacterized protein 67.0 75 0.0026 28.8 17.9 141 91-263 113-275 (309)
44 1yco_A Branched-chain phosphot 65.5 39 0.0013 31.7 10.3 203 42-279 2-237 (279)
45 1vmi_A Putative phosphate acet 64.9 16 0.00056 35.4 7.8 98 181-278 185-297 (355)
46 3l49_A ABC sugar (ribose) tran 63.9 16 0.00054 32.6 7.0 90 190-283 111-216 (291)
47 3ksm_A ABC-type sugar transpor 56.8 24 0.00083 30.9 6.9 72 191-263 112-195 (276)
48 3o74_A Fructose transport syst 50.0 69 0.0024 27.8 8.8 89 189-282 107-204 (272)
49 4e4r_A Phosphate acetyltransfe 50.0 37 0.0013 32.6 7.4 98 182-279 177-292 (331)
50 2q62_A ARSH; alpha/beta, flavo 48.5 67 0.0023 29.3 8.6 103 22-131 10-124 (247)
51 2zqe_A MUTS2 protein; alpha/be 48.2 84 0.0029 23.8 7.8 58 175-237 6-63 (83)
52 2fn9_A Ribose ABC transporter, 45.1 75 0.0026 28.0 8.3 80 182-263 107-199 (290)
53 3kuu_A Phosphoribosylaminoimid 45.1 47 0.0016 29.2 6.6 67 36-111 7-78 (174)
54 2rjo_A Twin-arginine transloca 44.7 71 0.0024 29.1 8.3 72 191-263 123-205 (332)
55 3l6u_A ABC-type sugar transpor 43.0 63 0.0022 28.5 7.4 80 182-263 112-203 (293)
56 3dlo_A Universal stress protei 42.5 36 0.0012 27.9 5.3 27 183-210 35-61 (155)
57 4azs_A Methyltransferase WBDD; 42.0 57 0.0019 33.2 7.7 66 192-266 80-145 (569)
58 3miz_A Putative transcriptiona 41.6 1.1E+02 0.0038 27.1 9.0 197 33-283 6-222 (301)
59 4hc4_A Protein arginine N-meth 39.7 24 0.00081 34.6 4.2 58 197-268 101-161 (376)
60 2fhp_A Methylase, putative; al 39.0 1E+02 0.0036 25.1 7.8 66 193-266 59-127 (187)
61 3lp6_A Phosphoribosylaminoimid 38.2 57 0.002 28.7 6.0 64 39-111 5-73 (174)
62 4aty_A Terephthalate 1,2-CIS-d 37.6 19 0.00064 34.9 3.1 29 35-66 1-32 (349)
63 2x7x_A Sensor protein; transfe 36.1 1.1E+02 0.0037 27.8 8.1 71 192-263 116-196 (325)
64 3d8u_A PURR transcriptional re 35.5 1.7E+02 0.0059 25.3 9.0 72 190-263 108-189 (275)
65 3nbm_A PTS system, lactose-spe 35.3 73 0.0025 25.4 5.8 57 40-109 5-62 (108)
66 1gud_A ALBP, D-allose-binding 32.4 1.1E+02 0.0038 27.1 7.3 64 202-270 133-205 (288)
67 1tvm_A PTS system, galactitol- 32.3 1.4E+02 0.0049 23.5 7.2 61 36-109 16-78 (113)
68 2fzv_A Putative arsenical resi 31.2 1.2E+02 0.0039 28.4 7.3 85 39-130 56-148 (279)
69 3tb6_A Arabinose metabolism tr 31.0 1.2E+02 0.0041 26.6 7.2 62 42-111 16-82 (298)
70 2ioy_A Periplasmic sugar-bindi 30.3 1.3E+02 0.0045 26.4 7.4 70 192-263 111-191 (283)
71 3idf_A USP-like protein; unive 29.9 1.7E+02 0.0059 22.5 7.4 28 184-212 12-40 (138)
72 3quf_A Extracellular solute-bi 29.8 1.3E+02 0.0045 28.1 7.6 57 202-263 29-91 (414)
73 3qd7_X Uncharacterized protein 29.1 2.4E+02 0.0082 23.4 8.3 63 175-237 49-112 (137)
74 1tjy_A Sugar transport protein 29.0 2.5E+02 0.0087 25.2 9.3 63 200-263 126-197 (316)
75 2h3h_A Sugar ABC transporter, 28.8 2E+02 0.007 25.6 8.5 70 192-263 111-190 (313)
76 3brq_A HTH-type transcriptiona 28.5 1.6E+02 0.0054 25.7 7.6 40 33-73 12-56 (296)
77 3egc_A Putative ribose operon 27.8 2.4E+02 0.0082 24.7 8.7 74 189-263 112-194 (291)
78 1xmp_A PURE, phosphoribosylami 27.6 1E+02 0.0035 26.9 5.8 63 40-111 10-77 (170)
79 2hi1_A 4-hydroxythreonine-4-ph 26.9 35 0.0012 33.0 2.9 16 43-58 8-25 (330)
80 3gbv_A Putative LACI-family tr 26.5 3E+02 0.01 23.9 9.2 68 39-111 6-80 (304)
81 3i3v_A Probable secreted solut 25.7 1.7E+02 0.0059 27.1 7.7 61 202-262 7-71 (405)
82 3brs_A Periplasmic binding pro 25.7 2E+02 0.0067 25.1 7.7 72 190-263 117-198 (289)
83 3trh_A Phosphoribosylaminoimid 25.6 1.1E+02 0.0039 26.7 5.7 64 39-111 4-72 (169)
84 3d02_A Putative LACI-type tran 25.5 1.6E+02 0.0054 25.9 7.0 32 40-71 3-37 (303)
85 3dbi_A Sugar-binding transcrip 25.4 2E+02 0.0068 26.1 7.9 76 190-270 169-254 (338)
86 3k4h_A Putative transcriptiona 25.3 3.3E+02 0.011 23.6 9.2 73 190-263 119-200 (292)
87 3k01_A Acarbose/maltose bindin 25.3 84 0.0029 29.5 5.4 59 202-262 27-91 (412)
88 3cfx_A UPF0100 protein MA_0280 25.3 1.3E+02 0.0043 27.2 6.4 46 219-264 17-64 (296)
89 3jy6_A Transcriptional regulat 25.2 75 0.0026 27.9 4.7 74 189-263 110-189 (276)
90 3m9w_A D-xylose-binding peripl 24.8 3.6E+02 0.012 23.8 9.5 63 41-111 2-69 (313)
91 1u11_A PURE (N5-carboxyaminoim 24.8 1.3E+02 0.0045 26.6 6.0 62 41-111 21-87 (182)
92 3c9h_A ABC transporter, substr 24.7 90 0.0031 28.8 5.4 56 203-263 34-95 (355)
93 3cs3_A Sugar-binding transcrip 24.3 3.5E+02 0.012 23.4 9.3 88 190-282 106-201 (277)
94 3c3k_A Alanine racemase; struc 24.3 2.5E+02 0.0086 24.5 8.2 35 39-73 6-43 (285)
95 3fdx_A Putative filament prote 24.0 28 0.00095 27.5 1.4 26 186-212 16-41 (143)
96 3oow_A Phosphoribosylaminoimid 23.8 1.5E+02 0.0052 25.8 6.2 61 42-111 6-71 (166)
97 4b4k_A N5-carboxyaminoimidazol 23.7 1.3E+02 0.0046 26.5 5.8 62 41-111 22-88 (181)
98 3lxy_A 4-hydroxythreonine-4-ph 23.1 47 0.0016 32.1 3.1 19 40-58 7-27 (334)
99 3cij_A UPF0100 protein AF_0094 23.1 1.3E+02 0.0045 27.0 6.1 46 219-264 17-64 (295)
100 3gv0_A Transcriptional regulat 22.7 2.1E+02 0.0073 25.1 7.4 89 189-282 114-212 (288)
101 3k9c_A Transcriptional regulat 22.4 2.6E+02 0.009 24.5 7.9 77 190-271 114-198 (289)
102 3cx5_E Cytochrome B-C1 complex 22.2 26 0.0009 30.8 1.0 25 289-314 141-165 (185)
103 3e3m_A Transcriptional regulat 22.0 3E+02 0.01 25.1 8.4 75 189-263 174-258 (355)
104 3rot_A ABC sugar transporter, 21.9 4E+02 0.014 23.3 9.2 72 190-263 116-196 (297)
105 3cfz_A UPF0100 protein MJ1186; 21.9 1.6E+02 0.0055 26.4 6.4 46 219-264 17-64 (292)
106 3ors_A N5-carboxyaminoimidazol 21.9 1.7E+02 0.0057 25.4 6.0 62 41-111 3-69 (163)
107 1dbq_A Purine repressor; trans 21.7 3.4E+02 0.012 23.5 8.5 73 190-263 114-195 (289)
108 4grd_A N5-CAIR mutase, phospho 21.7 1.7E+02 0.0058 25.6 6.1 62 41-111 12-78 (173)
109 3g1w_A Sugar ABC transporter; 21.7 2.1E+02 0.0072 25.2 7.1 72 190-263 113-195 (305)
110 1ws6_A Methyltransferase; stru 21.3 2.8E+02 0.0096 21.9 7.3 63 193-266 56-121 (171)
111 2rgy_A Transcriptional regulat 21.3 2.3E+02 0.0078 24.9 7.2 63 39-110 6-77 (290)
112 1elj_A Maltodextrin-binding pr 21.1 99 0.0034 28.7 4.9 44 219-262 20-66 (381)
113 2fep_A Catabolite control prot 21.0 2.2E+02 0.0076 25.0 7.1 64 38-109 13-81 (289)
114 3qk7_A Transcriptional regulat 20.8 3E+02 0.01 24.2 8.0 64 39-111 4-76 (294)
115 3cis_A Uncharacterized protein 20.5 1.5E+02 0.005 26.8 5.8 25 184-209 30-54 (309)
116 3uor_A ABC transporter sugar b 20.5 1.6E+02 0.0054 28.3 6.4 58 202-263 29-91 (458)
117 2b3f_A Glucose-binding protein 20.5 1.5E+02 0.0051 27.7 6.0 45 218-262 14-66 (400)
118 3evi_A Phosducin-like protein 20.2 49 0.0017 26.4 2.2 41 205-245 25-65 (118)
119 1yxo_A 4-hydroxythreonine-4-ph 20.1 53 0.0018 31.7 2.7 17 42-58 3-21 (328)
No 1
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=4.6e-117 Score=868.40 Aligned_cols=328 Identities=38% Similarity=0.596 Sum_probs=319.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCC--CCCCC
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI--GKGHR 118 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~--~~~~~ 118 (372)
.++|+||||||||||||+++++||++++++++|+++++|+++++++|+++|++++++|+++|++||||+++|. ..+++
T Consensus 1 ~~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~~~~~ 80 (333)
T 1x0l_A 1 AYRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKVPGFF 80 (333)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCCTTCC
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCCcCcc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999997 45678
Q ss_pred cccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHHHHHHHHH
Q 017413 119 SLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAK 198 (372)
Q Consensus 119 s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A~ 198 (372)
|+++.|||+||||+|+||||++| +++|++++|++||||||||+|+|.+++ .+++++++++||+++++||+|+||+||+
T Consensus 81 s~~l~lR~~ldlyan~RP~~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~~~~a~~~~~~T~~~~eRiar~AF~~A~ 158 (333)
T 1x0l_A 81 GAIRYLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-YLDVAIADAVISKKASERIGRAALRIAE 158 (333)
T ss_dssp CHHHHHHHHTTCCEEEEEEECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-ETTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHcCCEEEEEEEeecc-CCCCCCCCCEEEEecCccceecccccc-CCCeEEEEEEecHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999999887 6789999999999999999999999999
Q ss_pred hCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcC
Q 017413 199 THGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIG 278 (372)
Q Consensus 199 ~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~G 278 (372)
+|+|||||++||+|||+.+||||+++|+||+++||+|+++|++||+++||||++|++||||||+|||||||||++|+++|
T Consensus 159 ~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~eyp~I~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~G 238 (333)
T 1x0l_A 159 GRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVG 238 (333)
T ss_dssp TSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTT
T ss_pred hcCCCeEEEEecCccchhhhHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcC
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCCCC
Q 017413 279 GLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGS 358 (372)
Q Consensus 279 glGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~DlgG~ 358 (372)
|+||+||+|+|++++||||+|||||| ||||++|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+||||+
T Consensus 239 slGl~psanig~~~a~fEp~HGSAPd-iaGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g-~~T~DlgG~ 316 (333)
T 1x0l_A 239 GLGLAPSGNIGDTTAVFEPVHGSAPD-IAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERG-PRTPDLGGD 316 (333)
T ss_dssp CSTTCEEEEECSSCEEEEESSCCCGG-GTTSSCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-CCCGGGTCC
T ss_pred CcccceeeEECCCceEEeCCCCChhh-hcCCCCcCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcC-CccCccCCC
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999 699999999
Q ss_pred CCHHHHHHHHHHhC
Q 017413 359 STTSDFTKAICDHL 372 (372)
Q Consensus 359 ~~T~e~~dav~~~l 372 (372)
++|+||+|+|+++|
T Consensus 317 ~~T~e~~daV~~~l 330 (333)
T 1x0l_A 317 ATTEAFTEAVVEAL 330 (333)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999875
No 2
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=8e-117 Score=872.30 Aligned_cols=336 Identities=53% Similarity=0.840 Sum_probs=324.6
Q ss_pred ccCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC
Q 017413 35 FSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG 114 (372)
Q Consensus 35 ~~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~ 114 (372)
+++|+++++|++||||||||||++++++||++++++|+|+++++|.++ +++|+++|++++++|+++|++||||+++|..
T Consensus 15 ~~~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~ 93 (354)
T 3blx_B 15 PNPSTGKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLATPIG 93 (354)
T ss_dssp CCTTTSCEECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCCC--
T ss_pred chhcCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccCCCC
Confidence 467888899999999999999999999999999999999999999999 9999999999999999999999999999987
Q ss_pred CCCCcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHHHHH
Q 017413 115 KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAF 194 (372)
Q Consensus 115 ~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AF 194 (372)
.+++|+++.||++||||+|+||||++||+++|++++||+||||||||+|+|.+++..+++++++++||+++++||+|+||
T Consensus 94 ~~~~s~~l~lR~~ldlyan~RP~~~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~~~~~a~~~~~~T~~~~eRiar~AF 173 (354)
T 3blx_B 94 KGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAF 173 (354)
T ss_dssp --CCCHHHHHHHHHTEEEEEEEEECCTTCCCSSCSCEEEEEEECSSEEEEEEEEECSTTEEEEEEEEEHHHHHHHHHHHH
T ss_pred ccccCchHHHHHHcCCEEEEEEecccCCCCCCCCCccEEEEecCcCCcccCCcccccCCEEEEEEEEcHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999887788999999999999999999999
Q ss_pred HHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCcc--EEEcCCcchhhHHHH
Q 017413 195 HYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDL 272 (372)
Q Consensus 195 e~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fd--Viv~~NlfGDIlSDl 272 (372)
+||++|+|||||++||+|||+.+||||+++|+||+++||+|+++|++||+++||||++|++|| ||||+|||||||||+
T Consensus 174 e~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~ 253 (354)
T 3blx_B 174 EYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDL 253 (354)
T ss_dssp HHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHH
Confidence 999999889999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred Hhhh-cCCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcC-Cc
Q 017413 273 CAGL-IGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEG-KY 350 (372)
Q Consensus 273 aa~l-~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G-~~ 350 (372)
+|++ +||+||+||+|||++++||||+|||||| ||||++|||+|+|||++|||+|||+.++|++|++||.+++++| ++
T Consensus 254 aa~l~~GslGl~pSanig~~~a~fEp~HGSAPd-iAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g~~~ 332 (354)
T 3blx_B 254 NSGLSAGSLGLTPSANIGHKISIFEAVHGSAPD-IAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAVLSTIASGPEN 332 (354)
T ss_dssp HHHHHTSSGGGCEEEEEESSCEEEEECSCCCGG-GTTTTCCCTHHHHHHHHHHHHHHTCHHHHHHHHHTHHHHHTSSTTS
T ss_pred HHhhccCCccccceeEECCCceEEecCCCChhh-hcCCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCc
Confidence 9999 9999999999999999999999999999 9999999999999999999999999999999999999999999 47
Q ss_pred cCCCCCCCCCHHHHHHHHHHhC
Q 017413 351 RTADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 351 ~T~DlgG~~~T~e~~dav~~~l 372 (372)
+|+||||+++|+||+|+|+++|
T Consensus 333 ~T~DlgG~~~T~e~~dav~~~l 354 (354)
T 3blx_B 333 RTGDLAGTATTSSFTEAVIKRL 354 (354)
T ss_dssp SCGGGTCCCCHHHHHHHHHHTC
T ss_pred cCCCcCCCCCHHHHHHHHHhhC
Confidence 9999999999999999999986
No 3
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=1.6e-115 Score=865.60 Aligned_cols=331 Identities=37% Similarity=0.567 Sum_probs=316.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHh-cCeEEECcccCCC
Q 017413 39 ITPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR-NKVGLKGPMATPI 113 (372)
Q Consensus 39 ~~~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~-~da~L~g~~~~p~ 113 (372)
+++++|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|++ +|++||||+++|.
T Consensus 8 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P~ 87 (366)
T 3ty4_A 8 TRRIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPT 87 (366)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCCS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCCC
Confidence 46799999999999999999999999996 678999999999999999999999999999999 5999999999997
Q ss_pred CC--CCCcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeee----eCCeEEEeecccHHHHH
Q 017413 114 GK--GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQV----VRGVVESLKIITRQASL 187 (372)
Q Consensus 114 ~~--~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~----~~~~a~~~~~~Tr~~~e 187 (372)
.+ +++|+++.|||+||||+|+||||++||+. ..++|||||||||||+|+|.+++. .+++++++++|||+++|
T Consensus 88 ~~~~~~~s~~l~LRk~ldlyaNvRP~~~~~g~~--~~~vD~vivREnTeG~Y~g~e~~~~~~~~~~~a~~~~~~Tr~~~e 165 (366)
T 3ty4_A 88 HKVAGYSSPIVALRKKMGLYANVRPVKSLDGAK--GKPVDLVIVRENTECLYVKEERMVQNTPGKRVAEAIRRISEEAST 165 (366)
T ss_dssp SCCTTCCCHHHHHHHHTTCCEEEEEEECCTTCS--SSCCEEEEEEECSCBGGGCCEEEEECCTTCCEEEEEEEEEHHHHH
T ss_pred CCCcccccchHHHHHHhCCeEEEEEEeccCCCC--CCCCcEEEEeeCCCCEeecCcceeccCCCCceEEEEEEecHHHHH
Confidence 54 67899999999999999999999999984 246999999999999999999876 35689999999999999
Q ss_pred HHHHHHHHHHHhC------------CCCceEEEecCcccccchHHHHHHHHHH---HhhCCCceeeeEeHHHHHHHHHhC
Q 017413 188 RVAEYAFHYAKTH------------GRERVSAIHKANIMQKTDGLFLKCCREV---AEKYPEITYEEVVIDNCCMMLVKN 252 (372)
Q Consensus 188 Riar~AFe~A~~r------------~rk~Vt~v~KaNvl~~tdglf~~~~~ev---a~eYp~I~~~~~~vDa~~~~Lv~~ 252 (372)
||+|+||+||++| +||+||+|||+|||+.+||||+++|+|| +++||+|+++|++||+++||||++
T Consensus 166 RIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ev~~~a~eypdV~~~~~~VD~~am~lv~~ 245 (366)
T 3ty4_A 166 KIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFRE 245 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHHHHGGGCGGGTTSEEEEEEHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHHHHHHhHhhCCCceEEeeeHHHHHHHHHhC
Confidence 9999999999998 6899999999999999999999999999 899999999999999999999999
Q ss_pred CCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHH
Q 017413 253 PAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHD 332 (372)
Q Consensus 253 P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~ 332 (372)
|++||||||+|||||||||++|+++||+||+||+|+|++++||||+|||||| ||||++|||+|+|||++|||+|||+.+
T Consensus 246 P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~a~fEpvHGSAPd-IaGk~iANP~A~IlS~amML~~lg~~~ 324 (366)
T 3ty4_A 246 PECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNFVMSEPVHGSAPD-IAGRGIANPVATFRSVALMLEFMGHQD 324 (366)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSSCEEECCSSCCCTT-TTTSSCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCCceEEecCCCChhh-cCCCCccCcHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCccCCCCCCCCCHHHHHHHHHHhC
Q 017413 333 KADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 333 ~A~~i~~Av~~~l~~G~~~T~DlgG~~~T~e~~dav~~~l 372 (372)
+|++|++||.+++++|+++|+||||+++|+||+|+|+++|
T Consensus 325 ~A~~Ie~Av~~~l~~G~~~T~Dlgg~~~T~e~~daV~~~l 364 (366)
T 3ty4_A 325 AAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANI 364 (366)
T ss_dssp HHHHHHHHHHHHHHHCSSCCGGGTSCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCccCcccCCCcCHHHHHHHHHHHh
Confidence 9999999999999999779999999999999999999986
No 4
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=6.1e-116 Score=864.56 Aligned_cols=332 Identities=48% Similarity=0.774 Sum_probs=319.6
Q ss_pred cCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC-
Q 017413 36 SSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG- 114 (372)
Q Consensus 36 ~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~- 114 (372)
++|+++++|+||||||||||||+++++||++++++|+|+++++|. ++|+++|++++++|+++|++||||+++|..
T Consensus 12 ~~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~----~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~ 87 (349)
T 3blx_A 12 KKYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQ----TDHKEGVYEAVESLKRNKIGLKGLWHTPADQ 87 (349)
T ss_dssp -CCCCCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSS----TTCHHHHHHHHHHHHHHSEEEEEECCSHHHH
T ss_pred cccCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCc----ccCCcCcHHHHHHHHHCCEEEECCccCCCCC
Confidence 478889999999999999999999999999999999999999997 799999999999999999999999999853
Q ss_pred CCCCcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHHHHH
Q 017413 115 KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAF 194 (372)
Q Consensus 115 ~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AF 194 (372)
++++|+|+.||++||||+|+|||+++||+++|++++||+||||||||+|+|.+++..+++++++++||+++++||+|+||
T Consensus 88 ~~~~s~~l~lR~~ldlyan~RP~~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~~~gva~~~~~~T~~~~eRiar~AF 167 (349)
T 3blx_A 88 TGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAF 167 (349)
T ss_dssp HTCHHHHHHHHHTSCEEEEEEEEECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECSTTEEEEEEEEEHHHHHHHHHHHH
T ss_pred CCccCchHHHHHHcCCEEEEEEEeccCCCCCCCCCcCEEEEecCCCCcEeCCceeccCCeEEEEEEeCHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999887788999999999999999999999
Q ss_pred HHHHhCCCCceEEEecCcccccchHHHHHHHHHHH-hhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHH
Q 017413 195 HYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLC 273 (372)
Q Consensus 195 e~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva-~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDla 273 (372)
+||++|++||||++||+|||+.|||||+++|+||+ ++||+|+++|++||+++||||++|++||||||+|||||||||++
T Consensus 168 ~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~a 247 (349)
T 3blx_A 168 DFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIG 247 (349)
T ss_dssp HHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHH
T ss_pred HHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCCCeeEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHH
Confidence 99999988999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcccccccCCCceeEeccC-CCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccC
Q 017413 274 AGLIGGLGLTPSCNIGEGGIALAEAV-HGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRT 352 (372)
Q Consensus 274 a~l~GglGl~pSanig~~~a~FEp~H-GsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T 352 (372)
|+++||+||+||+|+|++++||||+| ||||| ||||++|||+|+|||++|||+|||+.++|++|++||.+++++|+++|
T Consensus 248 a~l~GslGl~pSanig~~~a~fEpvH~GSAPd-iAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~G~~~T 326 (349)
T 3blx_A 248 AALIGGPGLVAGANFGRDYAVFEPGSRHVGLD-IKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHETIAEGKHTT 326 (349)
T ss_dssp HHHHTCGGGCEEEEEESSCEEECCTTTTSCC---CCTTCSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSSCB
T ss_pred HhhcCCcccceEEEECCCceeEcCCCCCchhh-hcCCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999 99999 99999999999999999999999999999999999999999997799
Q ss_pred CCCCCCCCHHHHHHHHHHhC
Q 017413 353 ADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 353 ~DlgG~~~T~e~~dav~~~l 372 (372)
+||||+++|+||+|+|+++|
T Consensus 327 ~Dlgg~~~T~e~~daI~~~l 346 (349)
T 3blx_A 327 RDIGGSSSTTDFTNEIINKL 346 (349)
T ss_dssp GGGTCCBCHHHHHHHHHHHH
T ss_pred CCcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999875
No 5
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=1.7e-115 Score=866.26 Aligned_cols=331 Identities=31% Similarity=0.482 Sum_probs=316.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeec-ccccccCCCCcHHHHHHHHhcCeEEECcccCCC-
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGT-EIDPRTQSFLTWESLESVRRNKVGLKGPMATPI- 113 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~-~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~- 113 (372)
++++|+||||||||||||+++++||+++ +++|+|+++++|+ ++++++|+++|++++++|+++|++||||+++|.
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 4589999999999999999999999986 7999999999999 889999999999999999999999999999996
Q ss_pred -CCCC--CcccHHHHHhhcceeeeEeccCCCCCCCcC-----CCccEEEeecCCCcccccceeeee----CCeEEEeecc
Q 017413 114 -GKGH--RSLNLTLRKELNLYANVRPCYSLPGYKTRY-----DDVNLITIRENTEGEYSGLEHQVV----RGVVESLKII 181 (372)
Q Consensus 114 -~~~~--~s~~~~LR~~ldlyanvRP~k~~pg~~~~~-----~~iDivIvREnteG~Y~g~~~~~~----~~~a~~~~~~ 181 (372)
+.++ +|+++.||++||||+|+||||++||+++|+ +++|||||||||||+|+|.+++.. +++++++++|
T Consensus 84 ~~~~~~~~s~~l~LR~~ldlyanvRP~~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~ 163 (364)
T 3flk_A 84 VPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIF 163 (364)
T ss_dssp BCHHHHHHTTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEESTTSTTCEEEEEEEE
T ss_pred CCCCcCcccchHHHHHHhCCeEEEEEEeccCCcccccccccCCCCCEEEEeeCCCceecCcCceeccCCCCCEEEEEEEE
Confidence 2222 578999999999999999999999999998 579999999999999999988764 5789999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEc
Q 017413 182 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVM 261 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~ 261 (372)
||+++|||+|+||+||++|++|+||+|||+|||+.|||||+++|+||+++||+|+++|++||+++||||++|++||||||
T Consensus 164 T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva~eypdv~~~~~~vD~~am~lv~~P~~FDVivt 243 (364)
T 3flk_A 164 TRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVA 243 (364)
T ss_dssp EHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHTTCTTCEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHHHHCCCceEEeeEHHHHHHHHHhCcccCcEEEe
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHhhhcCCCCcccccccCCCc---eeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcC-----cHHH
Q 017413 262 PNLYGDIISDLCAGLIGGLGLTPSCNIGEGG---IALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLE-----LHDK 333 (372)
Q Consensus 262 ~NlfGDIlSDlaa~l~GglGl~pSanig~~~---a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg-----~~~~ 333 (372)
+|||||||||++|+++||+||+||+|+|++. +||||+|||||| ||||++|||+|+|||++|||+||| +.++
T Consensus 244 ~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp~HGSAPd-iAGk~iANP~A~IlS~ammL~~lg~~~~~~~~~ 322 (364)
T 3flk_A 244 SNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPD-IFGKNIANPIAMIWSGALMLEFLGQGDERYQRA 322 (364)
T ss_dssp CHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCCCTT-TTTSSCCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccchHHHHHHHHHhcCCcccccccccCCCCCcceEEecCCCCchh-hcCCCccCcHHHHHHHHHHHHHhCcccchhHHH
Confidence 9999999999999999999999999999875 999999999999 999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHcCCccCCCCCCCCCHHHHHHHHHHhC
Q 017413 334 ADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 334 A~~i~~Av~~~l~~G~~~T~DlgG~~~T~e~~dav~~~l 372 (372)
|++|++||.+++++|+ +|+||||.+||+||+|+|+++|
T Consensus 323 A~~Ie~Av~~~l~~G~-~T~Dlgg~~~T~e~~~aV~~~l 360 (364)
T 3flk_A 323 HDDMLNAIERVIADGS-VTPDMGGTLSTQQVGAAISDTL 360 (364)
T ss_dssp HHHHHHHHHHHHHHTC-CCGGGTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CCcccCCCcCHHHHHHHHHHHH
Confidence 9999999999999995 9999999999999999999874
No 6
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=6.7e-114 Score=852.71 Aligned_cols=329 Identities=30% Similarity=0.442 Sum_probs=310.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC
Q 017413 39 ITPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG 114 (372)
Q Consensus 39 ~~~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~ 114 (372)
|++++|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|..
T Consensus 4 m~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (361)
T 3udu_A 4 MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKW 83 (361)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGG
T ss_pred CcceeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCCc
Confidence 45689999999999999999999999986 79999999999999999999999999999999999999999999952
Q ss_pred ----CCCC--c-ccHHHHHhhcceeeeEeccCCCCCC--Cc------CCCccEEEeecCCCcccccceeeeeCCeEEEee
Q 017413 115 ----KGHR--S-LNLTLRKELNLYANVRPCYSLPGYK--TR------YDDVNLITIRENTEGEYSGLEHQVVRGVVESLK 179 (372)
Q Consensus 115 ----~~~~--s-~~~~LR~~ldlyanvRP~k~~pg~~--~~------~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~ 179 (372)
.+.+ + +++.|||+||||||+||||++||++ +| ++++|||||||||||+|+|.++.. ++++++++
T Consensus 84 ~~~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~-~~~a~~~~ 162 (361)
T 3udu_A 84 DNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLG-KESAYDTE 162 (361)
T ss_dssp TTSCGGGSHHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEEC-SSEEEEEE
T ss_pred CCCCCCcCccccchHHHHHHcCCEEEEEEeeccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCc-CceEEEEE
Confidence 2222 2 2889999999999999999999995 66 458999999999999999998765 67899999
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEE
Q 017413 180 IITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVL 259 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdVi 259 (372)
+|||+++|||+|+||+||++| |||||+|||+|||+ +++||+++|+||+++||+|+++|++||+++||||++|++||||
T Consensus 163 ~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-t~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~~FDVi 240 (361)
T 3udu_A 163 IYTKKEIERIARIAFESARIR-KKKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDVM 240 (361)
T ss_dssp EEEHHHHHHHHHHHHHHHHHT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEE
T ss_pred eccHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhc-cchHHHHHHHHHHHHCCCCeEEeeeHHHHHHHHHhCcccCcEE
Confidence 999999999999999999999 78999999999996 8999999999999999999999999999999999999999999
Q ss_pred EcCCcchhhHHHHHhhhcCCCCcccccccCCC-ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHHHHHHH
Q 017413 260 VMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG-GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRI 337 (372)
Q Consensus 260 v~~NlfGDIlSDlaa~l~GglGl~pSanig~~-~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~~A~~i 337 (372)
||+|||||||||++|+++||+||+||+|||++ ++||||+|||||| ||||++|||+|+|||++|||+| ||++++|++|
T Consensus 241 Vt~NlfGDILSD~aa~l~GslGl~pSanig~~~~a~fEpvHGSAPd-IAGk~iANP~A~IlS~amML~~~lg~~~~A~~I 319 (361)
T 3udu_A 241 LCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPAGGSAPD-IAHLNIANPIAQILSAALMLKYSFKEEQAAQDI 319 (361)
T ss_dssp EECHHHHHHHHHHHHHHHCCGGGCEEEEECTTSCEEEEESSCCCGG-GTTSSCCCCHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred EecchhHHHHHHHHHHhcCchhhcceeeeCCCCCeeeecCCCChhh-hcCCCccCCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999986 5999999999999 9999999999999999999999 9999999999
Q ss_pred HHHHHHHHHcCCccCCCCCC--CCCHHHHHHHHHHhC
Q 017413 338 QNAILSTIAEGKYRTADLGG--SSTTSDFTKAICDHL 372 (372)
Q Consensus 338 ~~Av~~~l~~G~~~T~DlgG--~~~T~e~~dav~~~l 372 (372)
++||.+++++| ++|+|||| .+||+||+|+|+++|
T Consensus 320 e~Av~~~l~~g-~~T~DlgG~~~~~T~e~~~aV~~~l 355 (361)
T 3udu_A 320 ENAISLALAQG-KMTKDLNAKSYLNTDEMGDCILEIL 355 (361)
T ss_dssp HHHHHHHHHTT-CCCTTTCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CcCcCCCCCCccCHHHHHHHHHHHH
Confidence 99999999999 59999999 899999999999875
No 7
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=3.6e-113 Score=871.53 Aligned_cols=336 Identities=41% Similarity=0.682 Sum_probs=326.6
Q ss_pred ccCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccC-CCCcHHHHHHHHhcCeEEECcccCCC
Q 017413 35 FSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQ-SFLTWESLESVRRNKVGLKGPMATPI 113 (372)
Q Consensus 35 ~~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g-~~lp~etl~~i~~~da~L~g~~~~p~ 113 (372)
+.+++ +++|++||||||||||++++++||++++++|+|+++++|.++++++| +++|++++++|+++|++||||+++|.
T Consensus 14 ~~~~g-~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGavgtP~ 92 (496)
T 2d1c_A 14 VLEDG-RKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPV 92 (496)
T ss_dssp ECTTS-CEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCCCCCS
T ss_pred eccCC-CEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCccCCC
Confidence 34455 69999999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred CCCCCcccHHHHHhhcceeeeEeccCCCCCCCcC--CCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHH
Q 017413 114 GKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY--DDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAE 191 (372)
Q Consensus 114 ~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~--~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar 191 (372)
.++++|+|+.||++||||+|+||||++||+++|+ +++|++||||||||+|+|.+++..+++++++++||+++++||+|
T Consensus 93 ~~~~~s~~l~LRk~LdLyaNlRP~k~~pgl~splk~~~vD~vIVREnTEG~Y~G~e~~~~~~va~~~~v~Tr~~ieRIar 172 (496)
T 2d1c_A 93 GYGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVR 172 (496)
T ss_dssp SSSSCCHHHHHHHHTTCCEEEEEEECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEETTEEEEEEEEEHHHHHHHHH
T ss_pred cccccChHHHHHHHhCCEEEEEEEeecCCCCccccCCCccEEEEeeCcCceEeceeEecCCCeEEEEEEecHHHHHHHHH
Confidence 6778899999999999999999999999999999 79999999999999999999888889999999999999999999
Q ss_pred HHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHH
Q 017413 192 YAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISD 271 (372)
Q Consensus 192 ~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSD 271 (372)
+||+||++|+|++||+|||+|||+.+||||+++|+||+++||+|+++|++||+|+||||++|++||||||+|||||||||
T Consensus 173 ~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa~eYPdI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSD 252 (496)
T 2d1c_A 173 FAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSD 252 (496)
T ss_dssp HHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHHHHHHCCCceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHH
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCcc
Q 017413 272 LCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYR 351 (372)
Q Consensus 272 laa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~ 351 (372)
++|+++||+||+||+|||++++||||+|||||| ||||++|||+|+|||++|||+|||+.++|++|++||.+++++|+++
T Consensus 253 laA~l~GslGlapSanig~~~a~FEpvHGSAPD-IAGk~iANP~A~IlSaamML~hlG~~~~A~~Ie~AV~~vl~~G~~~ 331 (496)
T 2d1c_A 253 LTSGLIGGLGFAPSANIGNEVAIFEAVHGSAPK-YAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVL 331 (496)
T ss_dssp HHHTTTTCGGGCEEEEECSSCEEEEESSCCCTT-TTTSSCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHhcCCcccCcEEEECCCCceeeCCCCchhh-hcCCCccCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcCCee
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999779
Q ss_pred CCCCCC---CCCHHHHHHHHHHhC
Q 017413 352 TADLGG---SSTTSDFTKAICDHL 372 (372)
Q Consensus 352 T~DlgG---~~~T~e~~dav~~~l 372 (372)
|+|||| +++|+||+|+|+++|
T Consensus 332 T~DLgg~~~~~sT~e~~daV~~~L 355 (496)
T 2d1c_A 332 TGDVVGYDRGAKTTEYTEAIIQNL 355 (496)
T ss_dssp BHHHHCTTTCBCHHHHHHHHHHTT
T ss_pred ccccCCCCCCcCHHHHHHHHHHHH
Confidence 999999 899999999999976
No 8
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=2.9e-113 Score=842.32 Aligned_cols=323 Identities=39% Similarity=0.653 Sum_probs=315.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCCCC
Q 017413 42 ITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGH 117 (372)
Q Consensus 42 ~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~~~ 117 (372)
++|+||||||||||||+++++||+++ +++++|+++++|+++++++|+++|++++++|+++|++||||+++|..
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~--- 78 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAA--- 78 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHH---
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc---
Confidence 78999999999999999999999998 89999999999999999999999999999999999999999999952
Q ss_pred CcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHHHHHHHHHHHHH
Q 017413 118 RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYA 197 (372)
Q Consensus 118 ~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A 197 (372)
.+++.|||+||||+|+||||++||+++|++++|++||||||||+|+|.+++..+++++++++||+++++||+|+||+||
T Consensus 79 -~~~l~lR~~ldlyan~RP~~~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~~~~va~~~~~~T~~~~eRiar~AF~~A 157 (336)
T 1wpw_A 79 -DVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA 157 (336)
T ss_dssp -HHHHHHHHTTTCCEEEEEEECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHhCCEEEEEEEeccCCCCCCCCCCcEEEEecCccCeEcCCccccCCCeEEEEEEecHHHHHHHHHHHHHHH
Confidence 2799999999999999999999999999999999999999999999999887889999999999999999999999999
Q ss_pred HhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhc
Q 017413 198 KTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLI 277 (372)
Q Consensus 198 ~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~ 277 (372)
++| |||||++||+|||+.|||||+++|+||+++ +|+++|++||+++||||++|++||||||+|||||||||++|+++
T Consensus 158 ~~r-rkkvt~v~KaNvlk~t~glf~~~~~eva~~--~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~ 234 (336)
T 1wpw_A 158 LRR-RKKVTCVHKANVMRITDGLFAEACRSVLKG--KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIA 234 (336)
T ss_dssp HTT-TSEEEEEECTTTCTTHHHHHHHHHHHHHTT--TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHH
T ss_pred HHh-CCeEEEEECCcchhhhhHHHHHHHHHHHHh--CceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhc
Confidence 999 889999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCc-------HHHHHHHHHHHHHHHHcCCc
Q 017413 278 GGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLEL-------HDKADRIQNAILSTIAEGKY 350 (372)
Q Consensus 278 GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~-------~~~A~~i~~Av~~~l~~G~~ 350 (372)
||+||+||+|+|++++||||+|||||| ||||++|||+|+|||++|||+|||+ .++|++|++||.+++++|++
T Consensus 235 GslGl~pSanig~~~a~fEp~HGSApd-iaGk~iANP~A~IlS~ammL~~lg~~d~~~~~~~~A~~Ie~Av~~~l~~g~~ 313 (336)
T 1wpw_A 235 GSLGIAPSANIGDKKALFEPVHGAAFD-IAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKA 313 (336)
T ss_dssp TCGGGCEEEEECSSCEEEEESSCCCTT-TTTSSCCCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCccccceEEECCCCceEeCCCCCchh-hCCCCCcCcHHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999 9999999999999999999999999 99999999999999999977
Q ss_pred cCCCCCCCCCHHHHHHHHHHhC
Q 017413 351 RTADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 351 ~T~DlgG~~~T~e~~dav~~~l 372 (372)
+|+||||+++|+||+|+|+++|
T Consensus 314 ~T~DlgG~~~T~e~~dav~~~l 335 (336)
T 1wpw_A 314 LTPDVGGNATTDDLINEIYNKL 335 (336)
T ss_dssp CCGGGTCCCCHHHHHHHHHHSC
T ss_pred cCCccCCCCCHHHHHHHHHHhh
Confidence 9999999999999999999976
No 9
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=2.5e-113 Score=853.86 Aligned_cols=328 Identities=32% Similarity=0.515 Sum_probs=306.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC--
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG-- 114 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~-- 114 (372)
+++|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|..
T Consensus 23 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~~~~ 102 (390)
T 3u1h_A 23 KKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPKWDQ 102 (390)
T ss_dssp -CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCSTTTS
T ss_pred cceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCcCC
Confidence 489999999999999999999999998 89999999999999999999999999999999999999999999963
Q ss_pred --CCC--CcccHHHHHhhcceeeeEeccCCCCCC--CcC-----CCccEEEeecCCCcccccceeeee---CCeEEEeec
Q 017413 115 --KGH--RSLNLTLRKELNLYANVRPCYSLPGYK--TRY-----DDVNLITIRENTEGEYSGLEHQVV---RGVVESLKI 180 (372)
Q Consensus 115 --~~~--~s~~~~LR~~ldlyanvRP~k~~pg~~--~~~-----~~iDivIvREnteG~Y~g~~~~~~---~~~a~~~~~ 180 (372)
.+. .+.++.|||+||||||+||||++||++ ||+ +++|||||||||||+|+|.+++.. .++++++++
T Consensus 103 ~~~~~~~~~~ll~LRk~ldLyANvRP~k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~~g~~~a~~~~~ 182 (390)
T 3u1h_A 103 NPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTLL 182 (390)
T ss_dssp SCCSSSSSCCHHHHHHHTTEEEEEEEEECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------CTTCSEEEEEEE
T ss_pred CCcccCccchHHHHHHHhCCeEEEEEeeccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccCCCCceEEEEEE
Confidence 122 367999999999999999999999997 887 689999999999999999988753 347999999
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEE
Q 017413 181 ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLV 260 (372)
Q Consensus 181 ~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv 260 (372)
|||+++|||+|+||+||++| |||||+|||+||| .+|+||+++|+||+++||+|+++|++||+++||||++|++|||||
T Consensus 183 ~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVl-~t~glfr~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~FDViV 260 (390)
T 3u1h_A 183 YTREEIERIIRKAFELALTR-KKKVTSVDKANVL-ESSRLWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDVIV 260 (390)
T ss_dssp EEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTC-HHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEE
T ss_pred ecHHHHhHHHHHHHHHHHHc-CCceEEEECCccc-ccchHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhCcccCcEEE
Confidence 99999999999999999999 7899999999999 699999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHHHHHhhhcCCCCcccccccCCC-ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHHHHHHHH
Q 017413 261 MPNLYGDIISDLCAGLIGGLGLTPSCNIGEG-GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQ 338 (372)
Q Consensus 261 ~~NlfGDIlSDlaa~l~GglGl~pSanig~~-~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~~A~~i~ 338 (372)
|+|||||||||++|+++||+||+||+|+|++ ++||||+|||||| |||||+|||+|+|||++|||+| ||+.++|++|+
T Consensus 261 t~NlfGDILSD~aA~l~GslGl~pSanig~~~~a~fEpvHGSAPD-IAGk~iANP~A~IlS~amML~~~lg~~~~A~~Ie 339 (390)
T 3u1h_A 261 TENMFGDILSDEASMITGSLGMLPSASLSTDGLGLYEPVHGSAPD-IAGKGIANPLATILSAAMMLRYSFGLEEEAKAIE 339 (390)
T ss_dssp ECHHHHHHHHHHHHHHHSCTTTCEEEEEETTSCEEEEESSCCCTT-TTTSSCSCTHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ecccchHHHHHHHHHhcCchhhcceeeecCCCCeeEecCCCChhh-hcCCCcCCcHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999985 7999999999999 9999999999999999999999 99999999999
Q ss_pred HHHHHHHHcCCccCCCC--CC--CCCHHHHHHHHHHhC
Q 017413 339 NAILSTIAEGKYRTADL--GG--SSTTSDFTKAICDHL 372 (372)
Q Consensus 339 ~Av~~~l~~G~~~T~Dl--gG--~~~T~e~~dav~~~l 372 (372)
+||.+++++| ++|+|| || .+||+||+|+|+++|
T Consensus 340 ~AV~~vl~~G-~~T~Dl~~gG~~~~~T~e~~daV~~~l 376 (390)
T 3u1h_A 340 KAVEKVLAEG-YRTADIAKPGGKYVSTTEMTDEVKAAV 376 (390)
T ss_dssp HHHHHHHHHT-CCBTTTSCSSCCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CcChhhccCCCCccCHHHHHHHHHHHH
Confidence 9999999999 599999 66 799999999999875
No 10
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=5.4e-113 Score=846.33 Aligned_cols=327 Identities=33% Similarity=0.539 Sum_probs=311.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCC
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK 115 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~ 115 (372)
++++|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|...
T Consensus 2 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~ 81 (359)
T 2y3z_A 2 ASMKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWD 81 (359)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGT
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCccc
Confidence 4589999999999999999999999997 799999999999999999999999999999999999999999999522
Q ss_pred C-------CCcccHHHHHhhcceeeeEeccCCCCCC--CcC-----CCccEEEeecCCCcccccceeeeeCCeEEEeecc
Q 017413 116 G-------HRSLNLTLRKELNLYANVRPCYSLPGYK--TRY-----DDVNLITIRENTEGEYSGLEHQVVRGVVESLKII 181 (372)
Q Consensus 116 ~-------~~s~~~~LR~~ldlyanvRP~k~~pg~~--~~~-----~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~ 181 (372)
+ +++ ++.|||.||||+|+||||++||+. ||+ +++|||||||||||+|+|.++...+++++++++|
T Consensus 82 ~~~~~~~~~~~-~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~~~~~a~~~~~~ 160 (359)
T 2y3z_A 82 GLPRKIRPETG-LLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 160 (359)
T ss_dssp TSCGGGCHHHH-HHHHHHHTTEEEEEEEEECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEECSSCEECCCCC
T ss_pred cCCcccccchh-HHHHHHHhCCEEEEEEeeccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcCCCceEEEEEEE
Confidence 1 134 899999999999999999999983 675 4799999999999999999876556789999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEc
Q 017413 182 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVM 261 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~ 261 (372)
|+++++||+|+||+||++| |++||+|||+|||+ +++||+++|+||+++||+|+++|++||+++||||++|++||||||
T Consensus 161 T~~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~VD~~~mqlv~~P~~FDVivt 238 (359)
T 2y3z_A 161 SKPEVERVARVAFEAARKR-RKHVVSVDKANVLE-VGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVT 238 (359)
T ss_dssp CHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred cHHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-ccHHHHHHHHHHHHHCCcEEEEeeEHHHHHHHHhhCcccccEEEE
Confidence 9999999999999999999 78999999999999 899999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHHHHHHHHHH
Q 017413 262 PNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNA 340 (372)
Q Consensus 262 ~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~~A~~i~~A 340 (372)
+|||||||||++|+++||+||+||+|||++.+||||+|||||| ||||++|||+|+|||++|||+| ||+.++|++|++|
T Consensus 239 ~NlfGDILSD~aa~l~GslGl~pSanig~~~~~fEpvHGSAPd-iAGk~iANP~A~IlS~ammL~~slg~~~~A~~Ie~A 317 (359)
T 2y3z_A 239 GNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPD-IAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDA 317 (359)
T ss_dssp CHHHHHHHHHHHHTTTSCGGGCEEEEEESSCCEEEESSCCCGG-GTTSSCSCTHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHhcCcccccceeEeCCCCceeecCCCChhh-hCCCCCcCCHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999999999999999999999999999988899999999999 9999999999999999999999 9999999999999
Q ss_pred HHHHHHcCCccCCCCCCCCCHHHHHHHHHHhC
Q 017413 341 ILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 372 (372)
Q Consensus 341 v~~~l~~G~~~T~DlgG~~~T~e~~dav~~~l 372 (372)
|.+++++| +|+||||++||+||+|+|+++|
T Consensus 318 v~~~l~~g--~T~Dlgg~~~T~e~~daV~~~l 347 (359)
T 2y3z_A 318 VAKALLET--PPPDLGGSAGTEAFTATVLRHL 347 (359)
T ss_dssp HHHHHHHS--CCGGGTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHcC--CCCccCCCCCHHHHHHHHHHHH
Confidence 99999999 8999999999999999999874
No 11
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=4.3e-113 Score=850.58 Aligned_cols=331 Identities=30% Similarity=0.470 Sum_probs=311.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCC
Q 017413 38 DITPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI 113 (372)
Q Consensus 38 ~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~ 113 (372)
++..|+|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.
T Consensus 10 ~~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~ 89 (375)
T 3vmk_A 10 HGSSYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPK 89 (375)
T ss_dssp TTSCEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGG
T ss_pred CCCcceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCC
Confidence 567899999999999999999999999996 7999999999999999999999999999999999999999999996
Q ss_pred C---CCCC----cccHHHHHhhcceeeeEeccCCCCCC--CcC------CCccEEEeecCCCcccccceeeee----CCe
Q 017413 114 G---KGHR----SLNLTLRKELNLYANVRPCYSLPGYK--TRY------DDVNLITIRENTEGEYSGLEHQVV----RGV 174 (372)
Q Consensus 114 ~---~~~~----s~~~~LR~~ldlyanvRP~k~~pg~~--~~~------~~iDivIvREnteG~Y~g~~~~~~----~~~ 174 (372)
. ++.. ++++.|||+||||||+||||++||++ +|+ +++|||||||||||+|+|.++... +++
T Consensus 90 ~~~~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~~~~~~~ 169 (375)
T 3vmk_A 90 WEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGEGENEE 169 (375)
T ss_dssp GTTSCSTTSHHHHHHHHHHHHTTCCEEEEEEECCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEECCGGGCE
T ss_pred ccCCCccccccccchHHHHHHcCCeEEEEEEeccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCccccccCCCCce
Confidence 2 2222 23799999999999999999999996 664 689999999999999999877642 458
Q ss_pred EEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCC
Q 017413 175 VESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPA 254 (372)
Q Consensus 175 a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~ 254 (372)
++++++|||+++|||+|+||+||++| |||||+|||+|||+ +++||+++|+||+++||||+++|++||+++||||++|+
T Consensus 170 a~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-~~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~ 247 (375)
T 3vmk_A 170 AFDTMRYSRKEIRRIAKIAFESAQGR-RKKVTSVDKANVLA-CSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPN 247 (375)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGG
T ss_pred EEEEEEEcHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhh-hhhHHHHHHHHHHHHCCCceEeeeeHHHHHHHHHhCcc
Confidence 99999999999999999999999999 78999999999998 56999999999999999999999999999999999999
Q ss_pred CccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCc-eeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHH
Q 017413 255 AFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG-IALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHD 332 (372)
Q Consensus 255 ~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~-a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~ 332 (372)
+||||||+|||||||||++|+++||+||+||+|||++. +||||+|||||| ||||++|||+|+|||++|||+| ||+.+
T Consensus 248 ~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~~a~fEpvHGSAPd-IAGk~iANP~A~IlS~amML~~~lg~~~ 326 (375)
T 3vmk_A 248 EFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAGGSAPD-IAGQGIANPVAQILSAALLLRHSLKLED 326 (375)
T ss_dssp GCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEESSCCCTT-TTTSSCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred cCcEEEECchhHHHHHHHHHHhcCCccccceeeeCCCCceEEecCCCCchh-ccCCCccCcHHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999985 999999999999 9999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHcCCccCCCC-C---C--CCCHHHHHHHHHHhC
Q 017413 333 KADRIQNAILSTIAEGKYRTADL-G---G--SSTTSDFTKAICDHL 372 (372)
Q Consensus 333 ~A~~i~~Av~~~l~~G~~~T~Dl-g---G--~~~T~e~~dav~~~l 372 (372)
+|++|++||.++|++|+ +|+|| | | .++|+||+|+|+++|
T Consensus 327 ~A~~Ie~AV~~~l~~G~-~T~Dl~g~~~G~~~~~T~e~~~aV~~~l 371 (375)
T 3vmk_A 327 AALAIEAAVSKALSDGY-LTCELLPASERSQAKSTSQMGDYIAQAI 371 (375)
T ss_dssp HHHHHHHHHHHHHHTTC-CCGGGSCGGGGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCchhccCCCCCCccCHHHHHHHHHHHH
Confidence 99999999999999995 99999 5 6 899999999999875
No 12
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=5.1e-113 Score=847.77 Aligned_cols=327 Identities=34% Similarity=0.502 Sum_probs=312.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCC-
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK- 115 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~- 115 (372)
..+|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|...
T Consensus 12 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~ 91 (366)
T 1vlc_A 12 HMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDD 91 (366)
T ss_dssp EEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTT
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCcccc
Confidence 469999999999999999999999998 899999999999999999999999999999999999999999999622
Q ss_pred --C-CC--cc-cHHHHHhhcceeeeEeccCCCCCC--CcC------CCccEEEeecCCCcccccceeeeeCCeEEEeecc
Q 017413 116 --G-HR--SL-NLTLRKELNLYANVRPCYSLPGYK--TRY------DDVNLITIRENTEGEYSGLEHQVVRGVVESLKII 181 (372)
Q Consensus 116 --~-~~--s~-~~~LR~~ldlyanvRP~k~~pg~~--~~~------~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~ 181 (372)
. .+ +. |+.|||+||||+|+||||++||++ ||+ +++|||||||||||+|+|.+++..+++++++++|
T Consensus 92 ~~~~~r~~~~~~l~LRk~ldlyaN~RP~~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~a~~~~~~ 171 (366)
T 1vlc_A 92 LPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIY 171 (366)
T ss_dssp SCSTTSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECSSCEEEECCC
T ss_pred CCcccCcccchhHHHHHHhCCEEEEEEccccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCccccCCCeEEEEEEE
Confidence 1 11 44 999999999999999999999997 677 5799999999999999999988778899999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEc
Q 017413 182 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVM 261 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~ 261 (372)
||++++||+|+||+||++| |||||+|||+|||+ +|+||+++|+||+++||+|+++|++||+++||||++|++||||||
T Consensus 172 Tr~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-t~glf~~~~~eva~eypdV~~~~~~VD~~~mqlv~~P~~FDVivt 249 (366)
T 1vlc_A 172 DRKTVERIARTAFEIAKNR-RKKVTSVDKANVLY-SSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVILT 249 (366)
T ss_dssp CHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred cHHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-cchHHHHHHHHHHHHCCCceEEeeeHHHHHHHHhhCcccceEEEE
Confidence 9999999999999999999 88999999999999 999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHHHHHHHHHH
Q 017413 262 PNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNA 340 (372)
Q Consensus 262 ~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~~A~~i~~A 340 (372)
+|||||||||++|+++||+||+||+|+| +++||||+|||||| ||||++|||+|+|||++|||+| ||+.++|++|++|
T Consensus 250 ~NlfGDILSD~aa~l~GslGl~pSanig-~~alfEpvHGSAPd-IAGk~iANP~A~IlS~ammL~~slg~~~~A~~Ie~A 327 (366)
T 1vlc_A 250 TNMFGDILSDESAALPGSLGLLPSASFG-DKNLYEPAGGSAPD-IAGKNIANPIAQILSLAMMLEHSFGMVEEARKIERA 327 (366)
T ss_dssp CHHHHHHHHHHHTTSSSCGGGCEEEEES-SSEEEEESSCCCTT-TTTTTCSCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCccccccEeeeC-CceeeecCCCchhh-cCCCCccCcHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 9999999999999999999999999999 88999999999999 9999999999999999999999 9999999999999
Q ss_pred HHHHHHcCCccCCCCC---CC-CCHHHHHHHHHHhC
Q 017413 341 ILSTIAEGKYRTADLG---GS-STTSDFTKAICDHL 372 (372)
Q Consensus 341 v~~~l~~G~~~T~Dlg---G~-~~T~e~~dav~~~l 372 (372)
|.+++++| ++|+||| |+ +||+||+|+|+++|
T Consensus 328 v~~~l~~g-~~T~Dlg~~gg~~~~T~e~~daV~~~l 362 (366)
T 1vlc_A 328 VELVIEEG-YRTRDIAEDPEKAVSTSQMGDLICKKL 362 (366)
T ss_dssp HHHHHHTT-CCCGGGCSSGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHcC-CcccccccCCCCCcCHHHHHHHHHHHH
Confidence 99999999 6999998 67 89999999999875
No 13
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=1.5e-112 Score=860.25 Aligned_cols=331 Identities=30% Similarity=0.509 Sum_probs=312.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc-------CCCeEEEEEEeecccccccCC--CCcHHHHHHHHhcCeEEECccc
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQS--FLTWESLESVRRNKVGLKGPMA 110 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~-------~~~i~~~~~~~g~~~~~~~g~--~lp~etl~~i~~~da~L~g~~~ 110 (372)
.+++|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+ ++|++++++|+++|++||||++
T Consensus 35 ~~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~~ 114 (427)
T 3dms_A 35 DQPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLT 114 (427)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCC
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCCC
Confidence 4589999999999999999999999985 379999999999999999999 9999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCC---CccEEEeecCCCcccccceeeee----------------
Q 017413 111 TPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQVV---------------- 171 (372)
Q Consensus 111 ~p~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~---~iDivIvREnteG~Y~g~~~~~~---------------- 171 (372)
+|.+.+++|+|+.|||+||||||+||||++||++||++ ++|||||||||||+|+|.|++..
T Consensus 115 tP~~~~~~s~~l~LRk~LdLyaNlRPv~~~pg~~splk~~~~vDivIvREnTeG~Y~G~e~~~~~~~~~~~~~~~~~~~g 194 (427)
T 3dms_A 115 TPVGGGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFLQEEMG 194 (427)
T ss_dssp CCC----CCHHHHHHHHTTCCEEEEEECCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHHHHHHHHHHHTSC
T ss_pred CCCCcccCChhHHHHHHhCCeEEEEEeecCCCCCCCCCCCCCceEEEEEECCCCEecCcccccCCccccccccccccccc
Confidence 99877888999999999999999999999999999984 79999999999999999986531
Q ss_pred -------CCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCCC---------
Q 017413 172 -------RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE--------- 234 (372)
Q Consensus 172 -------~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp~--------- 234 (372)
+++++++++|||++++||+|+||+||++|+||+||+|||+|||+.|||||+++|+||++ +||+
T Consensus 195 ~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~~~~eva~~eypdv~~~~~~~~ 274 (427)
T 3dms_A 195 VKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWM 274 (427)
T ss_dssp CCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHCCEESTTSSCE
T ss_pred ccccccCCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCcccccccccc
Confidence 34688999999999999999999999999889999999999999999999999999997 7985
Q ss_pred ----------ceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcc
Q 017413 235 ----------ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAP 304 (372)
Q Consensus 235 ----------I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd 304 (372)
|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+|||++++||||+||||||
T Consensus 275 ~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~a~fEpvHGSAPd 354 (427)
T 3dms_A 275 KFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEATHGTAPK 354 (427)
T ss_dssp EEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECSSCEEEEECSCCCGG
T ss_pred ccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCccccceeeeCCCcceEEeccCChhh
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCCC------CCCHHHHHHHHHHhC
Q 017413 305 DIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGG------SSTTSDFTKAICDHL 372 (372)
Q Consensus 305 ~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~DlgG------~~~T~e~~dav~~~l 372 (372)
||||++|||+|+|||++|||+|||+.++|++|++||.++|++|+ +|+|||| .+||+||+|+|+++|
T Consensus 355 -IAGk~iANP~A~IlS~amML~~lg~~~~A~~Ie~AV~~vl~~G~-~T~Dlgg~~~g~~~~~T~e~~daV~~~l 426 (427)
T 3dms_A 355 -YAGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEKSIKQKR-VTYDFARLMEGATQVSCSGFGQVLIENM 426 (427)
T ss_dssp -GTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTE-ECHHHHTTSSSCEECCHHHHHHHHHHTT
T ss_pred -hcCCCcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC-cchhhccccCCCCccCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999995 8999976 589999999999986
No 14
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=2.3e-112 Score=844.11 Aligned_cols=329 Identities=32% Similarity=0.500 Sum_probs=310.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCC
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK 115 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~ 115 (372)
++++|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|...
T Consensus 3 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~ 82 (363)
T 1cnz_A 3 KNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWE 82 (363)
T ss_dssp CCEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGT
T ss_pred CccEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCccc
Confidence 3589999999999999999999999998 799999999999999999999999999999999999999999999521
Q ss_pred -------CCCcccHHHHHhhcceeeeEeccCCCCCC--CcC------CCccEEEeecCCCcccccceeee----eCCeEE
Q 017413 116 -------GHRSLNLTLRKELNLYANVRPCYSLPGYK--TRY------DDVNLITIRENTEGEYSGLEHQV----VRGVVE 176 (372)
Q Consensus 116 -------~~~s~~~~LR~~ldlyanvRP~k~~pg~~--~~~------~~iDivIvREnteG~Y~g~~~~~----~~~~a~ 176 (372)
.++++++.|||+||||+|+||||++||+. ||+ +++||+||||||||+|+|.++.. .+++++
T Consensus 83 ~~~~~~~~e~~~~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~~~~~~~~a~ 162 (363)
T 1cnz_A 83 NLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAF 162 (363)
T ss_dssp TSCGGGSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECCGGGCEEE
T ss_pred cCCcccCcccchHHHHHHHcCCEEEEEEEEecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCccccCCCCceEE
Confidence 22356899999999999999999999983 676 57999999999999999986433 135799
Q ss_pred EeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCc
Q 017413 177 SLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAF 256 (372)
Q Consensus 177 ~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~f 256 (372)
++++||+++++||+|+||+||++| |||||+|||+|||+ +++||+++|+||+++||+|+++|++||+++||||++|++|
T Consensus 163 ~~~~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~F 240 (363)
T 1cnz_A 163 DTEVYHRFEIERIARIAFESARKR-RRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQF 240 (363)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred EEEEEcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceEeeeeHHHHHHHHhhCcccc
Confidence 999999999999999999999999 78999999999999 8999999999999999999999999999999999999999
Q ss_pred cEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCc-eeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHHHH
Q 017413 257 DVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG-IALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKA 334 (372)
Q Consensus 257 dViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~-a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~~A 334 (372)
|||||+|||||||||++|+++||+||+||+|+|++. +||||+|||||| ||||++|||+|+|||++|||+| ||+.++|
T Consensus 241 DVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~~a~fEpvHGSAPd-iAGk~iANP~A~IlS~ammL~~~lg~~~~A 319 (363)
T 1cnz_A 241 DVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPD-IAGKNIANPIAQILSLALLLRYSLDANDAA 319 (363)
T ss_dssp SEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEESSCCCGG-GTTTTCSCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred eEEEECCcchHHHHHHHHHhcCCCcccccceeCCCCCeEEEcCCCChhh-hcCCCccCcHHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999875 999999999999 9999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCCccCCCC-CC-C-CCHHHHHHHHHHhC
Q 017413 335 DRIQNAILSTIAEGKYRTADL-GG-S-STTSDFTKAICDHL 372 (372)
Q Consensus 335 ~~i~~Av~~~l~~G~~~T~Dl-gG-~-~~T~e~~dav~~~l 372 (372)
++|++||.+++++| ++|+|| || + ++|+||+|+|+++|
T Consensus 320 ~~Ie~Av~~~l~~g-~~T~Dl~gG~~~~~T~e~~daV~~~l 359 (363)
T 1cnz_A 320 TAIEQAINRALEEG-VRTGDLARGAAAVSTDEMGDIIARYV 359 (363)
T ss_dssp HHHHHHHHHHHHTT-CCCGGGTTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CcCcccCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999 599999 78 6 89999999999875
No 15
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=6.4e-112 Score=833.64 Aligned_cols=322 Identities=31% Similarity=0.500 Sum_probs=308.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC-CC--CC
Q 017413 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG-KG--HR 118 (372)
Q Consensus 42 ~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~-~~--~~ 118 (372)
++|+||||||||||||+++++||+++..+|+|+++++|+++++++|+++|++++++|+++|++||||+++|.. .+ ++
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~~~~~~~ 81 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPSGVLER 81 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCTTHHHH
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCCCccccc
Confidence 6899999999999999999999999977899999999999999999999999999999999999999999952 22 36
Q ss_pred cccHHHHHhhcceeeeEeccCCCCCCCcCCC---ccEEEeecCCCcccccceeeee----CCeEEEeecccHHHHHHHHH
Q 017413 119 SLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLITIRENTEGEYSGLEHQVV----RGVVESLKIITRQASLRVAE 191 (372)
Q Consensus 119 s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~---iDivIvREnteG~Y~g~~~~~~----~~~a~~~~~~Tr~~~eRiar 191 (372)
|+|+.|||+||||+|+||||++||+++|+++ +||+||||||||+|+|.+++.. +++++++++||+++++||+|
T Consensus 82 s~~l~lR~~ldlyan~RP~~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~~g~~~~~a~~~~~~T~~~~eRiar 161 (337)
T 1w0d_A 82 GLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVA 161 (337)
T ss_dssp HTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHHHHHH
T ss_pred chHHHHHHHcCCEEEEEEeecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceecCCCCCCeEEEEEEEcHHHHHHHHH
Confidence 7899999999999999999999999999976 9999999999999999998753 35899999999999999999
Q ss_pred HHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHH
Q 017413 192 YAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISD 271 (372)
Q Consensus 192 ~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSD 271 (372)
+||+||++| |||||+|||+|||+.|||||+++|+||+++||+|+++|++||+++||||++|++||||||+|||||||||
T Consensus 162 ~AFe~A~~r-rkkVt~v~KaNvlk~s~glf~~~~~eva~eyp~i~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD 240 (337)
T 1w0d_A 162 DAFERARRR-RKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITD 240 (337)
T ss_dssp HHHHHHHHT-TSEEEEEECTTTSHHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEECCccchhhhHHHHHHHHHHHHHCCceEEEEEEHHHHHHHHhhCcccccEEEECcchhHHHHH
Confidence 999999999 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCcccccccCC---CceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcC
Q 017413 272 LCAGLIGGLGLTPSCNIGE---GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEG 348 (372)
Q Consensus 272 laa~l~GglGl~pSanig~---~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G 348 (372)
++|+++||+||+||+|+|+ +++||||+|||||| ||||++|||+|+|||++|||+|||+.++|++|++||.+++++|
T Consensus 241 ~aa~l~GslGl~psanig~~~~~~a~fEp~HGSAPd-iAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g 319 (337)
T 1w0d_A 241 LAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPD-IAGQGIADPTAAIMSVALLLSHLGEHDAAARVDRAVEAHLATR 319 (337)
T ss_dssp HHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGG-GTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhcCCcccCceeEeCCCCCCceEEecCCCChhh-hCCCCCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999998 56899999999999 9999999999999999999999999999999999999999999
Q ss_pred CccCCCCCC-CCCHHHHHHHHHHhC
Q 017413 349 KYRTADLGG-SSTTSDFTKAICDHL 372 (372)
Q Consensus 349 ~~~T~DlgG-~~~T~e~~dav~~~l 372 (372)
|| ++||+||+|+|+++|
T Consensus 320 -------gg~~~~T~e~~~av~~~l 337 (337)
T 1w0d_A 320 -------GSERLATSDVGERIAAAL 337 (337)
T ss_dssp -------TTCCCCHHHHHHHHHHTC
T ss_pred -------CCCCcCHHHHHHHHHhhC
Confidence 77 899999999999986
No 16
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=5.7e-112 Score=852.52 Aligned_cols=330 Identities=32% Similarity=0.562 Sum_probs=309.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc-------CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCC
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI 113 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~-------~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~ 113 (372)
.++|++|||||||||||+++++||+++ +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.
T Consensus 24 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~ 103 (409)
T 2e0c_A 24 KPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLKGPLETPI 103 (409)
T ss_dssp SBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCC---
T ss_pred CceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCC
Confidence 478999999999999999999999987 3899999999999999999999999999999999999999999997
Q ss_pred CCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCC---CccEEEeecCCCcccccceeee--------------------
Q 017413 114 GKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQV-------------------- 170 (372)
Q Consensus 114 ~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~---~iDivIvREnteG~Y~g~~~~~-------------------- 170 (372)
+.+++|+|+.||+.||||+|+|||+++||+++|++ ++|||||||||||+|+|.+++.
T Consensus 104 ~~~~~s~~l~LR~~LdlyanvRPv~~~~g~~splk~~~~vDivIvREnteg~Y~g~e~~~~~~~~~~v~~f~~~~~~~~~ 183 (409)
T 2e0c_A 104 GKGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFLRKELKVEI 183 (409)
T ss_dssp -----CHHHHHHHHTTCCEEEEEEECCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTSHHHHHHHHHHHHHSCCCC
T ss_pred cccccChhHHHHHHcCCEEEEEEEeccCCCCCCCCCccCCcEEEEEcCCCCEeCCcccccCCCcccchhhccchhccccC
Confidence 77788999999999999999999999999999985 6999999999999999998753
Q ss_pred eCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCCC---------------
Q 017413 171 VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE--------------- 234 (372)
Q Consensus 171 ~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp~--------------- 234 (372)
.+++++++++||+++++||+|+||+||++|+||+||+|||+|||+.|||||+++|+||++ +||+
T Consensus 184 ~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~~~~~~~~~~ 263 (409)
T 2e0c_A 184 EDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKPDQ 263 (409)
T ss_dssp CSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHTTTCCCT
T ss_pred CCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHHHHHHHHHhCCCccccccccccccccC
Confidence 246899999999999999999999999999889999999999999999999999999998 9999
Q ss_pred --ceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCC
Q 017413 235 --ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLA 312 (372)
Q Consensus 235 --I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iA 312 (372)
|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+|+|++++||||+|||||| ||||++|
T Consensus 264 ~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~a~fEp~HGSAPd-iAGk~iA 342 (409)
T 2e0c_A 264 GKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIGDEGGMFEAIHGTAPK-YAGKNVA 342 (409)
T ss_dssp TSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEETTEEEEEESSCCCGG-GTTTTCS
T ss_pred CeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccCceEEECCCceEEecCCCChhh-hcCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCCC-----CCCHHHHHHHHHHhC
Q 017413 313 NPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGG-----SSTTSDFTKAICDHL 372 (372)
Q Consensus 313 NPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~DlgG-----~~~T~e~~dav~~~l 372 (372)
||+|+|||++|||+|||+.++|++|++||.+++++|+ +|+|||| .++|+||+|+|+++|
T Consensus 343 NP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g~-~T~Dl~g~~g~~~~~T~e~~daV~~~l 406 (409)
T 2e0c_A 343 NPTGIIKAGELMLRWMGWNEAADLIEKAINMAIRDKK-VTQDIARFMGVKALGTKEYADELIKIM 406 (409)
T ss_dssp CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHTSCCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC-ccccccccCCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999995 8999964 679999999999875
No 17
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.1e-112 Score=852.97 Aligned_cols=330 Identities=35% Similarity=0.584 Sum_probs=317.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCCC
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKG 116 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~~ 116 (372)
.++|++|||||||||||+++++||+++ +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.+.+
T Consensus 27 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~~~ 106 (412)
T 2iv0_A 27 NPIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGGG 106 (412)
T ss_dssp SBEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSSSS
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCCcc
Confidence 478999999999999999999999998 8999999999999999999999999999999999999999999998778
Q ss_pred CCcccHHHHHhhcceeeeEeccCCCCCCCcCC---CccEEEeecCCCcccccceeee--------------------eCC
Q 017413 117 HRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQV--------------------VRG 173 (372)
Q Consensus 117 ~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~---~iDivIvREnteG~Y~g~~~~~--------------------~~~ 173 (372)
++|+|+.||+.||||+|+||||++||+++|++ ++|||||||||||+|+|.+++. .++
T Consensus 107 ~~s~~l~LR~~Ldlyan~RPv~~~~g~~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~~~~~~ 186 (412)
T 2iv0_A 107 YRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLKNEFGVTIRED 186 (412)
T ss_dssp SSHHHHHHHHHTTCCEEEEEEECCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHHHHHHHHHHHHHCCCCCTT
T ss_pred ccChhHHHHHHcCCeEEEEEEEecCCCCCCCCCcCCCCEEEEecCCCCEeCCcccccCCccccchhhcccccccccCCCc
Confidence 89999999999999999999999999999986 5999999999999999998753 236
Q ss_pred eEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCCC------------------
Q 017413 174 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE------------------ 234 (372)
Q Consensus 174 ~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp~------------------ 234 (372)
+++++++||+++++||+|+||+||++|+||+||+|||+|||+.|||||+++|+||++ +||+
T Consensus 187 ~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~ 266 (412)
T 2iv0_A 187 SGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPE 266 (412)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHHHHSTTTEECHHHHHHHHTTCCCT
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHHHHHHhCCCccccccchhhhccccccC
Confidence 899999999999999999999999999889999999999999999999999999998 9999
Q ss_pred --ceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCC
Q 017413 235 --ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLA 312 (372)
Q Consensus 235 --I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iA 312 (372)
|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+|+|++++||||+|||||| ||||++|
T Consensus 267 ~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapsanig~~~a~fEp~HGSAPd-iAGk~iA 345 (412)
T 2iv0_A 267 GKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIGDGIGVFEPVHGSAPK-YAGQNKV 345 (412)
T ss_dssp TCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEEEETTEEEEEESSCCCST-TTTSSCS
T ss_pred CeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCccccceEEECCCceEEeCCCCChhh-cCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCC---C--CCCHHHHHHHHHHhC
Q 017413 313 NPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLG---G--SSTTSDFTKAICDHL 372 (372)
Q Consensus 313 NPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~Dlg---G--~~~T~e~~dav~~~l 372 (372)
||+|+|||++|||+|||+.++|++|++||.+++++|+ +|+||| | .++|+||+|+|+++|
T Consensus 346 NP~A~IlS~amML~~lg~~~~A~~Ie~Av~~~l~~g~-~T~Dl~~~~G~~~~~T~e~~daV~~~l 409 (412)
T 2iv0_A 346 NPTAEILTGALMFEYIGWKDASEMIKKAVEMTISSGI-VTYDIHRHMGGTKVGTREFAEAVVENL 409 (412)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTE-ECHHHHHHHCSEECCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC-cccccccccCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999995 899996 5 589999999999875
No 18
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=4.6e-112 Score=849.00 Aligned_cols=329 Identities=29% Similarity=0.484 Sum_probs=309.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC-
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG- 114 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~- 114 (372)
++++|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|..
T Consensus 41 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~~ 120 (405)
T 3r8w_A 41 KRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKWD 120 (405)
T ss_dssp CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCcc
Confidence 5689999999999999999999999997 78999999999999999999999999999999999999999999952
Q ss_pred --CCCC---cccHHHHHhhcceeeeEeccCCCCC--CCcC-----CCccEEEeecCCCcccccceeeee-----CCeEEE
Q 017413 115 --KGHR---SLNLTLRKELNLYANVRPCYSLPGY--KTRY-----DDVNLITIRENTEGEYSGLEHQVV-----RGVVES 177 (372)
Q Consensus 115 --~~~~---s~~~~LR~~ldlyanvRP~k~~pg~--~~~~-----~~iDivIvREnteG~Y~g~~~~~~-----~~~a~~ 177 (372)
+... +.++.|||+||||+|+||||++||+ +||+ +++|||||||||||+|+|.+++.. ++++++
T Consensus 121 ~~~~~~~p~~~ll~LRk~ldLyaNlRP~k~~~gl~~~splk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~~~~~~a~~ 200 (405)
T 3r8w_A 121 NNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFN 200 (405)
T ss_dssp TSCGGGSHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECSSSCEEEEE
T ss_pred CCccccCcccchHHHHHHhCCeEEEEEeeccCCccccCccccccCCCceEEEEeeCCCCeecCCccccccCCCCceEEEE
Confidence 2222 3489999999999999999999998 4665 579999999999999999987642 247899
Q ss_pred eecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCcc
Q 017413 178 LKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD 257 (372)
Q Consensus 178 ~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fd 257 (372)
+++|||+++|||+|+|||||++| ||+||+|||+|||+.+ +||+++|+||+++||||+++|++||+++||||++|++||
T Consensus 201 ~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVlk~s-glf~~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~FD 278 (405)
T 3r8w_A 201 TEVYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLEAS-ILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFD 278 (405)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCHHH-HHHHHHHHHHGGGSTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred EEEecHHHHHHHHHHHHHHHHHc-CCeEEEEECchhhccc-cHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhChhhCc
Confidence 99999999999999999999987 7899999999999965 999999999999999999999999999999999999999
Q ss_pred EEEcCCcchhhHHHHHhhhcCCCCcccccccCCC-ceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHHHHH
Q 017413 258 VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG-GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKAD 335 (372)
Q Consensus 258 Viv~~NlfGDIlSDlaa~l~GglGl~pSanig~~-~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~~A~ 335 (372)
||||+|||||||||++|+++||+||+||+|||++ ++||||+|||||| |||||+|||+|+|||++|||+| ||+.++|+
T Consensus 279 ViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~~a~fEpvHGSAPD-IAGk~iANP~A~IlS~amML~~slg~~~~A~ 357 (405)
T 3r8w_A 279 TIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPD-IAGQDKANPLATILSAAMLLKYGLGEEKAAK 357 (405)
T ss_dssp EEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSSCCEEEESSCCCGG-GTTTTCCCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred EEeecchhhHHHHHHHHHhcCcccccceeeecCCCCeEEecCCCChhh-hCCCCCCCcHHHHHHHHHHHHhhCccHHHHH
Confidence 9999999999999999999999999999999986 6999999999999 9999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCCccCCCC--CCC--CCHHHHHHHHHHhC
Q 017413 336 RIQNAILSTIAEGKYRTADL--GGS--STTSDFTKAICDHL 372 (372)
Q Consensus 336 ~i~~Av~~~l~~G~~~T~Dl--gG~--~~T~e~~dav~~~l 372 (372)
+|++||.+++++| ++|+|| ||. ++|+||+|+|+++|
T Consensus 358 ~Ie~AV~~~l~~G-~~T~Dl~~gG~~~~~T~e~~~aV~~~l 397 (405)
T 3r8w_A 358 RIEDAVLVALNNG-FRTGDIYSAGTKLVGCKEMGEEVLKSV 397 (405)
T ss_dssp HHHHHHHHHHHTT-EECGGGCCTTSEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CcCccccCCCCcccCHHHHHHHHHHHH
Confidence 9999999999999 599999 999 99999999999875
No 19
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=5e-111 Score=833.67 Aligned_cols=327 Identities=31% Similarity=0.507 Sum_probs=306.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCCCC
Q 017413 42 ITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGH 117 (372)
Q Consensus 42 ~~I~vi~GDGiGpEv~~~~~~vl~a~----~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~~~ 117 (372)
++|+||||||||||||+++++||+++ +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|...+.
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 79999999999999999999999998 79999999999999999999999999999999999999999999962211
Q ss_pred ---C---cccHHHHHhhcceeeeEeccCCCCCC--CcC-----CCccEEEeecCCCcccccceeee--e--CCeEEEeec
Q 017413 118 ---R---SLNLTLRKELNLYANVRPCYSLPGYK--TRY-----DDVNLITIRENTEGEYSGLEHQV--V--RGVVESLKI 180 (372)
Q Consensus 118 ---~---s~~~~LR~~ldlyanvRP~k~~pg~~--~~~-----~~iDivIvREnteG~Y~g~~~~~--~--~~~a~~~~~ 180 (372)
. +.++.|||.||||+|+||||++||+. +|+ +++|||||||||||+|+|.++.. . +++++++++
T Consensus 82 ~~~~~~e~~ll~lRk~ldlyanvRP~~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~~~~~~~~a~~~~~ 161 (358)
T 1a05_A 82 PPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMV 161 (358)
T ss_dssp CGGGSHHHHHHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEETTEEEEEEEEE
T ss_pred CccccchhhHHHHHHHcCCEEEEEEEEecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCccccCCCCceEEEEEE
Confidence 1 22899999999999999999999983 776 47999999999999999986432 2 247889999
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEE
Q 017413 181 ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLV 260 (372)
Q Consensus 181 ~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv 260 (372)
||+++++||+|+||+||++| |++||+|||+|||+ +++||+++|+||+++||+|+++|++||+++||||++|++|||||
T Consensus 162 ~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~vD~~~mqlv~~P~~FDViv 239 (358)
T 1a05_A 162 YDEDEIRRIAHVAFRAAQGR-RKQLCSVDKANVLE-TTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLL 239 (358)
T ss_dssp EEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEEE
T ss_pred EcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceEEeeeHHHHHHHHHhCCCcccEEE
Confidence 99999999999999999999 88999999999999 89999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccCCCCCChhhHHHHHHHHHhh-cCcHHHHHHHHH
Q 017413 261 MPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQN 339 (372)
Q Consensus 261 ~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~-lg~~~~A~~i~~ 339 (372)
|+|||||||||++|+++||+||+||+|+|+.++||||+|||||| ||||++|||+|+|||++|||+| ||+.++|++|++
T Consensus 240 t~NlfGDIlSD~aa~l~GslGl~pSanig~~~~~fEpvHGSAPd-iAGk~iANP~A~IlS~ammL~~~lg~~~~A~~Ie~ 318 (358)
T 1a05_A 240 TGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIHGSAPD-IAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEA 318 (358)
T ss_dssp ECHHHHHHHHHHHHHTTSCGGGCEEEEECSSCEEEEESSCCCGG-GTTTTCSCCHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ecCcccHhHHHHHHhhcCCccccceeeeCCCceeeecCCCChhH-hcCCCccCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999778999999999999 9999999999999999999999 999999999999
Q ss_pred HHHHHHHcCCccCCCCCC---C-CCHHHHHHHHHHhC
Q 017413 340 AILSTIAEGKYRTADLGG---S-STTSDFTKAICDHL 372 (372)
Q Consensus 340 Av~~~l~~G~~~T~DlgG---~-~~T~e~~dav~~~l 372 (372)
||.+++++| ++|+||+| + ++|+||+|+|+++|
T Consensus 319 Av~~~l~~g-~~T~Dl~g~g~~~~~T~e~~daV~~~l 354 (358)
T 1a05_A 319 AVQRVLDQG-LRTADIAAPGTPVIGTKAMGAAVVNAL 354 (358)
T ss_dssp HHHHHHHTT-CCCGGGCCTTSCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHcC-CcCcccccCCCCCcCHHHHHHHHHHHh
Confidence 999999999 59999953 6 89999999999986
No 20
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=5.3e-111 Score=848.70 Aligned_cols=330 Identities=32% Similarity=0.556 Sum_probs=316.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc-------CCCeEEEEEEeecccccccCC--CCcHHHHHHHHhcCeEEECcccC
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQS--FLTWESLESVRRNKVGLKGPMAT 111 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~-------~~~i~~~~~~~g~~~~~~~g~--~lp~etl~~i~~~da~L~g~~~~ 111 (372)
.++|++|||||||||||+++++||+++ +++|+|+++++|.++++++|+ ++|++++++|+++|++||||+++
T Consensus 26 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~lkGav~t 105 (429)
T 2d4v_A 26 QPIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLET 105 (429)
T ss_dssp SBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEEEECCccC
Confidence 478999999999999999999999987 389999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCC---CccEEEeecCCCcccccceeee------------------
Q 017413 112 PIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQV------------------ 170 (372)
Q Consensus 112 p~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~---~iDivIvREnteG~Y~g~~~~~------------------ 170 (372)
|.+.+++|+|+.||+.||||+|+||||++||+++|++ ++|||||||||||+|+|.+++.
T Consensus 106 P~~~~~~s~~l~LRk~LdLyanvRPv~~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~ 185 (429)
T 2d4v_A 106 PVGGGIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRFLREEMGV 185 (429)
T ss_dssp CSSSSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHHHHTSCC
T ss_pred CCcccccChhHHHHHHcCCEEEEEEEEecCCCCCCCCCcCCCCEEEEEeCCCCeecCcccccCCcccccceecccccccc
Confidence 9877889999999999999999999999999999985 6999999999999999998753
Q ss_pred -----eCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCCC----------
Q 017413 171 -----VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE---------- 234 (372)
Q Consensus 171 -----~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp~---------- 234 (372)
.+++++++++||+++++||+|+||+||++|+||+||+|||+|||+.|||||+++|+||++ +||+
T Consensus 186 ~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~~~~~~~ 265 (429)
T 2d4v_A 186 TKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKAA 265 (429)
T ss_dssp CCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHHH
T ss_pred ccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccccccccc
Confidence 235899999999999999999999999999889999999999999999999999999998 9999
Q ss_pred ----------------------ceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCc
Q 017413 235 ----------------------ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG 292 (372)
Q Consensus 235 ----------------------I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~ 292 (372)
|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+|||+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~ 345 (429)
T 2d4v_A 266 ISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANLSDTH 345 (429)
T ss_dssp HHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCCCEEECSSC
T ss_pred ccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcccHHHHHHHHHhcCCHhhcCeeEECCCc
Confidence 8999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCCC------CCCHHHHHH
Q 017413 293 IALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGG------SSTTSDFTK 366 (372)
Q Consensus 293 a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~DlgG------~~~T~e~~d 366 (372)
+||||+|||||| ||||++|||+|+|||++|||+|||+.++|++|++||.+++++|+ +|+|||| .++|+||+|
T Consensus 346 a~fEpvHGSAPd-iAGk~iANP~A~IlS~amML~hlg~~~~A~~Ie~Av~~~l~~g~-~T~Dlg~~~~g~~~~~T~e~~d 423 (429)
T 2d4v_A 346 AIFEATHGTAPD-IAGQGKANPSSLILSAVMMLEHLGWGEAAQAIVAAMNATIAAGE-VTGDLAALRGDVPALSTTEFTA 423 (429)
T ss_dssp EEEECSCCCCTT-TTTTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-EEHHHHTTCTTCCEECHHHHHH
T ss_pred eEEecCCCChhH-hcCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-ccccccccCCCCCCcCHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999995 8999974 479999999
Q ss_pred HHHHhC
Q 017413 367 AICDHL 372 (372)
Q Consensus 367 av~~~l 372 (372)
+|+++|
T Consensus 424 aV~~~l 429 (429)
T 2d4v_A 424 ALIRRF 429 (429)
T ss_dssp HHHTTC
T ss_pred HHHhhC
Confidence 999886
No 21
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=7.9e-111 Score=846.76 Aligned_cols=330 Identities=32% Similarity=0.556 Sum_probs=316.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc-------CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCC
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI 113 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~-------~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~ 113 (372)
.++|++|||||||||||+++++||+++ +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.
T Consensus 19 ~~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lkGav~tP~ 98 (423)
T 1hqs_A 19 NPIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTPV 98 (423)
T ss_dssp SBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCS
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCC
Confidence 478999999999999999999999987 3899999999999999999999999999999999999999999998
Q ss_pred CCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCC---CccEEEeecCCCcccccceeee--------------------
Q 017413 114 GKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQV-------------------- 170 (372)
Q Consensus 114 ~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~---~iDivIvREnteG~Y~g~~~~~-------------------- 170 (372)
+.+++|+|+.||+.||||+|+|||+++||+++|++ ++|||||||||||+|+|.+++.
T Consensus 99 ~~~~~s~nl~LRk~LdlyanvRPv~~~pg~~splk~~~~vDivIvREnteg~Y~G~e~~~g~~~~~~v~~~~~~~~~~~~ 178 (423)
T 1hqs_A 99 GGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNK 178 (423)
T ss_dssp SSSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHHHHHSCCCC
T ss_pred CcCcCChhHHHHHHcCCEEEEEEEeccCCCCCCCCCCCCCcEEEEecCCCCeecccccccCCccccceeccccccccccc
Confidence 77889999999999999999999999999999985 5999999999999999998752
Q ss_pred ---eCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCCC------------
Q 017413 171 ---VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE------------ 234 (372)
Q Consensus 171 ---~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp~------------ 234 (372)
.+++++++++||+++++||+|+||+||++|+|++||+|||+|||+.|||||++||+||++ +||+
T Consensus 179 ~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~~ 258 (423)
T 1hqs_A 179 IRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIA 258 (423)
T ss_dssp CSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHGGGEEEHHHHHHHH
T ss_pred cccCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccchhhhcccc
Confidence 246899999999999999999999999999889999999999999999999999999998 9999
Q ss_pred --------------------ceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccC--CCc
Q 017413 235 --------------------ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGG 292 (372)
Q Consensus 235 --------------------I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig--~~~ 292 (372)
|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+||| +++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGl~pSanigp~~~~ 338 (423)
T 1hqs_A 259 EEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGH 338 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECTTTCC
T ss_pred ccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcchHHHHHHHHhhcCCcccCccceecCCCCc
Confidence 8899999999999999999999999999999999999999999999999999999 778
Q ss_pred eeEeccCCCCcccccCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHcCCccCCCCCC------CCCHHHHHH
Q 017413 293 IALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGG------SSTTSDFTK 366 (372)
Q Consensus 293 a~FEp~HGsApd~iaGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av~~~l~~G~~~T~DlgG------~~~T~e~~d 366 (372)
+||||+|||||| ||||++|||+|+|||++|||+|||+.++|++|++||.+++++| .+|+|||| .++|+||+|
T Consensus 339 alfEp~HGSAPd-iAGk~iANP~A~IlS~amML~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~g~~~g~~~~~T~e~~d 416 (423)
T 1hqs_A 339 AIFEATHGTAPK-YAGLDKVNPSSVILSGVLLLEHLGWNEAADLVIKSMEKTIASK-VVTYDFARLMDGATEVKCSEFGE 416 (423)
T ss_dssp EEEEESCCCCGG-GTTTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT-EECHHHHTTSSSCEECCHHHHHH
T ss_pred eEEecCCCChhh-hCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999 48999976 689999999
Q ss_pred HHHHhC
Q 017413 367 AICDHL 372 (372)
Q Consensus 367 av~~~l 372 (372)
+|+++|
T Consensus 417 aV~~~l 422 (423)
T 1hqs_A 417 ELIKNM 422 (423)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 999986
No 22
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=2.1e-110 Score=845.53 Aligned_cols=330 Identities=33% Similarity=0.548 Sum_probs=316.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc-------CCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCC
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATP 112 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~-------~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p 112 (372)
..++|++|||||||||||+++++||+++ +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|
T Consensus 34 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP 113 (435)
T 1tyo_A 34 DNPVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETP 113 (435)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEECCccCC
Confidence 3589999999999999999999999987 389999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCC---CccEEEeecCCCcccccceeee-------------------
Q 017413 113 IGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQV------------------- 170 (372)
Q Consensus 113 ~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~---~iDivIvREnteG~Y~g~~~~~------------------- 170 (372)
.+.+++|+|+.||+.||||+|+|||+++ |+++|++ ++|||||||||||+|+|.+++.
T Consensus 114 ~~~~~~s~~l~LRk~LdlyanlRPv~~~-gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~~ 192 (435)
T 1tyo_A 114 VGTGYRSLNVAIRQALDLYANIRPVRYY-GQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGIS 192 (435)
T ss_dssp TTSCTTHHHHHHHHHHTCCEEEEEEECC-SCCCSBTTGGGCEEEEEEECSSSGGGCCEECTTSHHHHHHHHHHHHHHCCC
T ss_pred CcccccChhHHHHHHcCCEEEeEEEEec-CCCCCCCCcCCCcEEEEecCCCCeecccccccCCccccceeccchhhcccc
Confidence 8778899999999999999999999999 9999986 5999999999999999998743
Q ss_pred -eCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCCC--------------
Q 017413 171 -VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE-------------- 234 (372)
Q Consensus 171 -~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp~-------------- 234 (372)
.+++++++++||+++++||+|+||+||++|+|++||+|||+|||+.|||||+++|+||++ +||+
T Consensus 193 ~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~e~~~~~~~~~ 272 (435)
T 1tyo_A 193 IREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGG 272 (435)
T ss_dssp CCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSGGGEEEHHHHHHHSTT
T ss_pred CCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccccccccccccc
Confidence 246899999999999999999999999999889999999999999999999999999998 9999
Q ss_pred ------ceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCceeEeccCCCCcccccC
Q 017413 235 ------ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAG 308 (372)
Q Consensus 235 ------I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~FEp~HGsApd~iaG 308 (372)
|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+|||++++||||+|||||| |||
T Consensus 273 ~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapSanig~~~a~fEpvHGSAPd-iAG 351 (435)
T 1tyo_A 273 VRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMGDGIAVAEPVHGTAPK-YAG 351 (435)
T ss_dssp CCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECSSCEEEEESSCCCGG-GTT
T ss_pred cccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCceeeECCCceeeecCCCChHH-hcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCChhhHHHHHHHHH-hhcCcHHHHHHHHHHHHHHHHcCCccCCCCCC------CCCHHHHHHHHHHhC
Q 017413 309 KNLANPTALLLSSVTML-RHLELHDKADRIQNAILSTIAEGKYRTADLGG------SSTTSDFTKAICDHL 372 (372)
Q Consensus 309 k~iANPia~Ils~amML-~~lg~~~~A~~i~~Av~~~l~~G~~~T~DlgG------~~~T~e~~dav~~~l 372 (372)
|++|||+|+|||++||| +|||+.++|++|++||.+++++|+ +|+|||| .++|+||+|+|+++|
T Consensus 352 k~iANP~A~IlS~amML~~hlg~~~~A~~Ie~Av~~~l~~g~-~T~Dlgg~~~g~~~~~T~e~~daV~~~l 421 (435)
T 1tyo_A 352 KDLINPSAEILSASLLIGEFMGWREVKSIVEYAIRKAVQSKK-VTQDLARHMPGVQPLRTSEYTETLIAYI 421 (435)
T ss_dssp SSCSCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHTTC-CBHHHHTTSTTCCCBCHHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-cCccccccCCCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999995 8999986 579999999999875
No 23
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.1e-105 Score=810.20 Aligned_cols=335 Identities=21% Similarity=0.232 Sum_probs=308.6
Q ss_pred ccccCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCC
Q 017413 33 RAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATP 112 (372)
Q Consensus 33 ~~~~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p 112 (372)
+.|+|...+++|++|||||||||||+++++||++.+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|
T Consensus 22 ~~~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP 101 (427)
T 3us8_A 22 SMMAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITP 101 (427)
T ss_dssp ---CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCC
T ss_pred cccccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCC
Confidence 34566666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC---------CCCCcccHHHHHhhcceeeeEeccCCCCCCCcCC--CccEEEeecCCCcccccceeeee----------
Q 017413 113 IG---------KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD--DVNLITIRENTEGEYSGLEHQVV---------- 171 (372)
Q Consensus 113 ~~---------~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~--~iDivIvREnteG~Y~g~~~~~~---------- 171 (372)
.. ++++|+|++||+.||||+|+||+ .+++++++.+ ++|||||||||||+|+|.++...
T Consensus 102 ~~~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv-~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~ 180 (427)
T 3us8_A 102 DEGRVEEFKLKKMWKSPNGTIRNILGGVIFREPI-ICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFV 180 (427)
T ss_dssp CHHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEEC-CCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEE
T ss_pred CccccccccccccccCchHHHHHHhCCeEEecce-eccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeee
Confidence 63 57889999999999999999999 6666665543 59999999999999999987642
Q ss_pred ----------------CCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCC-
Q 017413 172 ----------------RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYP- 233 (372)
Q Consensus 172 ----------------~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp- 233 (372)
++++ ...++|+++++||+|+||+||++| +++||+|||+|||+.|||||+++|+||++ +||
T Consensus 181 ~~~G~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r-~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~ 258 (427)
T 3us8_A 181 GEDGQTIEHDVYDAPGAGVA-LAMYNLDESITEFARASFNYGLQR-KVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAA 258 (427)
T ss_dssp ETTSCEEEEEEEEESSCEEE-EEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHH
T ss_pred ccccccccccccccCCCcEE-EEEeeCHHHHHHHHHHHHHHHHHc-CCcEEEEECcccchhhhhHHHHHHHHHHHHhCcc
Confidence 2345 456789999999999999999998 57899999999999999999999999999 996
Q ss_pred -----CceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCc--eeEeccCCCCccc-
Q 017413 234 -----EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG--IALAEAVHGSAPD- 305 (372)
Q Consensus 234 -----~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~--a~FEp~HGsApd~- 305 (372)
+|+++|++||+++||||++|++| ||||+|||||||||++|+++||+||+||+|||++. ++|||+||||||+
T Consensus 259 ~~~~~~I~~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~ 337 (427)
T 3us8_A 259 QFKAEKLWYEHRLIDDMVASALKWSGGY-VWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHY 337 (427)
T ss_dssp HHHHTTCCEEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHH
T ss_pred ccCCCCeEEEEEEHHHHHHHHhhCCCCc-EEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCcc
Confidence 99999999999999999999999 99999999999999999999999999999999875 9999999999984
Q ss_pred ---ccCCCC-CChhhHHHHHHHHHhhcCc-------HHHHHHHHHHHHHHHHcCCccCCCCCC-------CCCHHHHHHH
Q 017413 306 ---IAGKNL-ANPTALLLSSVTMLRHLEL-------HDKADRIQNAILSTIAEGKYRTADLGG-------SSTTSDFTKA 367 (372)
Q Consensus 306 ---iaGk~i-ANPia~Ils~amML~~lg~-------~~~A~~i~~Av~~~l~~G~~~T~DlgG-------~~~T~e~~da 367 (372)
||||++ |||+|+|||++|||+|||+ .++|++|++||.+++++|+ +|+|||| .++|+||+|+
T Consensus 338 ~~~iAGk~i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~-~T~Dlgg~~~~~~~~~~T~e~~da 416 (427)
T 3us8_A 338 RQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESGF-MTKDLALLIGPDQPWLSTTGFLDK 416 (427)
T ss_dssp HHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTC-CBHHHHHHHCTTCCCBCHHHHHHH
T ss_pred chhcCCCCceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCC-cCcccccccccCCcccCHHHHHHH
Confidence 899998 9999999999999999997 7899999999999999995 9999988 7899999999
Q ss_pred HHHhC
Q 017413 368 ICDHL 372 (372)
Q Consensus 368 v~~~l 372 (372)
|+++|
T Consensus 417 V~~~l 421 (427)
T 3us8_A 417 IDENL 421 (427)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 24
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=1.6e-104 Score=798.34 Aligned_cols=329 Identities=21% Similarity=0.242 Sum_probs=305.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC----
Q 017413 39 ITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG---- 114 (372)
Q Consensus 39 ~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~---- 114 (372)
..+++|++|||||||||||++++++|++++++|+|+++++|+++++++|+++|++++++|+++|++||||+++|..
T Consensus 4 ~~~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~~~ 83 (402)
T 2uxq_A 4 QMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVE 83 (402)
T ss_dssp CCSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHH
T ss_pred eeecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCcccCc
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred -----CCCCcccHHHHHhhcceeeeEeccCCCCCCCcCC--CccEEEeecCCCcccccceeeee----------------
Q 017413 115 -----KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD--DVNLITIRENTEGEYSGLEHQVV---------------- 171 (372)
Q Consensus 115 -----~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~--~iDivIvREnteG~Y~g~~~~~~---------------- 171 (372)
++++|+|+.||+.||||+|+|||+ +|+++++++ ++||+||||||||+|+|.++...
T Consensus 84 ~~~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g~~ 162 (402)
T 2uxq_A 84 EYGLKEQWKSPNATVRAMLDGTVFRKPIM-VKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGKE 162 (402)
T ss_dssp HHTCSSCCCCHHHHHHHHHCCEEEEEECC-CTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTSCE
T ss_pred cccccccccCchHHHHHHhCCeEEEEEEE-cCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCCcc
Confidence 367899999999999999999998 699987764 59999999999999998766530
Q ss_pred ---------CCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHH-hhCCC------c
Q 017413 172 ---------RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPE------I 235 (372)
Q Consensus 172 ---------~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva-~eYp~------I 235 (372)
...+....++|+++++||+|+||+||++| +++||+|||+|||+.|||||+++|+||+ ++||+ |
T Consensus 163 ~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~I 241 (402)
T 2uxq_A 163 TRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQ-KIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGI 241 (402)
T ss_dssp EEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHTC
T ss_pred ccccccccCCCceEEEEEECHHHHHHHHHHHHHHHHHc-CCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCCeE
Confidence 12344444799999999999999999998 6789999999999999999999999999 69999 9
Q ss_pred eeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCc-eeEeccCCCCcccc-----cCC
Q 017413 236 TYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG-IALAEAVHGSAPDI-----AGK 309 (372)
Q Consensus 236 ~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~-a~FEp~HGsApd~i-----aGk 309 (372)
+++|++||+++||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+|||||| | |||
T Consensus 242 ~~~~~~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~lfEpvHGSAPd-i~~~~~aGk 319 (402)
T 2uxq_A 242 EYFYTLIDDVVARMMKTEGGM-LWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYGYFEYEAAHGTVQR-HYYQHLKGE 319 (402)
T ss_dssp CEEEEEHHHHHHHHTTCCCCS-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCEEEECCSCCCHH-HHHHHHTTC
T ss_pred EEEEEEHHHHHHHHccCCCce-EEEEcccchHHHHHHHHHhcCCccccccceecCCCCeEEeCCCCChhh-hhhhhhcCC
Confidence 999999999999999999999 99999999999999999999999999999999987 899999999999 8 999
Q ss_pred CC-CChhhHHHHHHHHHhhcCcHH-------HHHHHHHHHHHHHHcCCccCCCCCC--------CCCHHHHHHHHHHhC
Q 017413 310 NL-ANPTALLLSSVTMLRHLELHD-------KADRIQNAILSTIAEGKYRTADLGG--------SSTTSDFTKAICDHL 372 (372)
Q Consensus 310 ~i-ANPia~Ils~amML~~lg~~~-------~A~~i~~Av~~~l~~G~~~T~DlgG--------~~~T~e~~dav~~~l 372 (372)
++ |||+|+|||++|||+|||+.+ +|++|++||.+++++| ++|+|||| .++|+||+|+|+++|
T Consensus 320 ~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G-~~T~Dlgg~~~g~~~~~~~T~e~~daI~~~l 397 (402)
T 2uxq_A 320 RTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESG-YMTGDLARICEPAAIKVLDSIEFIDELGKRL 397 (402)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-EECHHHHTTCSSCCSEECCHHHHHHHHHHHH
T ss_pred CcccCcHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCCCcCHHHHHHHHHHHH
Confidence 95 999999999999999999876 7999999999999999 59999976 589999999999875
No 25
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=1.6e-102 Score=786.16 Aligned_cols=331 Identities=24% Similarity=0.248 Sum_probs=303.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC--
Q 017413 37 SDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG-- 114 (372)
Q Consensus 37 ~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~-- 114 (372)
|...+++|++|||||||||||++++++|.+.+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|..
T Consensus 4 ~i~~~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~~ 83 (413)
T 1lwd_A 4 RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEAR 83 (413)
T ss_dssp CEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred cceecccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCccc
Confidence 433467899999999999999999999999899999999999999999999999999999999999999999999962
Q ss_pred -------CCCCcccHHHHHhhcceeeeEeccCCCCCCCcCC--CccEEEeecCCCcccccceeeee--------------
Q 017413 115 -------KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD--DVNLITIRENTEGEYSGLEHQVV-------------- 171 (372)
Q Consensus 115 -------~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~--~iDivIvREnteG~Y~g~~~~~~-------------- 171 (372)
++++|+|+.||+.||||+|+|||+. |+++++++ .+||+|+||||||.|+|.++...
T Consensus 84 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~-~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g 162 (413)
T 1lwd_A 84 VEEFKLKKMWKSPNGTIRNILGGTVFREPIIC-KNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG 162 (413)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHCSEEEEEECCC-TTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTC
T ss_pred CccccccccccCccHHHHHhcCCEEEEeeeec-cCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCC
Confidence 3678999999999999999999975 76665543 59999999999999998654321
Q ss_pred ------------CCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHH-hhCCC----
Q 017413 172 ------------RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPE---- 234 (372)
Q Consensus 172 ------------~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva-~eYp~---- 234 (372)
...+....+||+++++||+|+||+||++| +++||+|||+|||+.|||||+++|+||+ ++||+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~ 241 (413)
T 1lwd_A 163 SSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQK-KWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDK 241 (413)
T ss_dssp CCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cccccccccccCCCcEEEEEEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccC
Confidence 12445556899999999999999999998 6789999999999999999999999999 69999
Q ss_pred --ceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCc--eeEeccCCCCcccc----
Q 017413 235 --ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG--IALAEAVHGSAPDI---- 306 (372)
Q Consensus 235 --I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~--a~FEp~HGsApd~i---- 306 (372)
|+++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||++. +||||+|||||| |
T Consensus 242 ~~I~~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPd-i~~~~ 319 (413)
T 1lwd_A 242 YKIWYEHRLIDDMVAQVLKSSGGF-VWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR-HYREH 319 (413)
T ss_dssp TTCCEEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHH-HHHHH
T ss_pred CeEEEEEEEHHHHHHHHhcCCCce-EEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCCCCChhh-hhhhh
Confidence 9999999999999999999999 99999999999999999999999999999999875 899999999999 8
Q ss_pred -cCCCC-CChhhHHHHHHHHHhhcCcHH-------HHHHHHHHHHHHHHcCCccCCCCC----C---------CCCHHHH
Q 017413 307 -AGKNL-ANPTALLLSSVTMLRHLELHD-------KADRIQNAILSTIAEGKYRTADLG----G---------SSTTSDF 364 (372)
Q Consensus 307 -aGk~i-ANPia~Ils~amML~~lg~~~-------~A~~i~~Av~~~l~~G~~~T~Dlg----G---------~~~T~e~ 364 (372)
|||++ |||+|+|||++|||+|||+.+ +|++|++||.+++++| ++|+||| | .++|+||
T Consensus 320 ~aGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~~~~T~e~ 398 (413)
T 1lwd_A 320 QKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESG-AMTKDLAGCIHGLSNVKLNEHFLNTSDF 398 (413)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHCTTSCCBTTTBCCHHHH
T ss_pred hcCCCCccChHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHHcC-CcCcccccccCCcccccccCCCCCHHHH
Confidence 99996 999999999999999999875 8999999999999999 5999996 5 5799999
Q ss_pred HHHHHHhC
Q 017413 365 TKAICDHL 372 (372)
Q Consensus 365 ~dav~~~l 372 (372)
+|+|+++|
T Consensus 399 ~daV~~~l 406 (413)
T 1lwd_A 399 LDTIKSNL 406 (413)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 26
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-102 Score=781.35 Aligned_cols=334 Identities=20% Similarity=0.256 Sum_probs=305.4
Q ss_pred ccCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC
Q 017413 35 FSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG 114 (372)
Q Consensus 35 ~~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~ 114 (372)
|+|...+++|++|||||||||||++++++|.+.+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|..
T Consensus 1 ~~~~~~~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~ 80 (399)
T 1zor_A 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDA 80 (399)
T ss_dssp CCCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred CCcccccccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCc
Confidence 34555568999999999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred ---------CCCCcccHHHHHhhcceeeeEeccCCCCCCCcCC--CccEEEeecCCCcccccceeee----------e--
Q 017413 115 ---------KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD--DVNLITIRENTEGEYSGLEHQV----------V-- 171 (372)
Q Consensus 115 ---------~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~--~iDivIvREnteG~Y~g~~~~~----------~-- 171 (372)
++++|+|+.||+.||||+|+||++ +|+++++++ .+||+|+||||||.|+|.++.. .
T Consensus 81 ~~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e 159 (399)
T 1zor_A 81 ERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIM-VKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNK 159 (399)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHTCEEEEEECC-BTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESS
T ss_pred ccCccccccccccCchHHHHHHhCCEEEEEEee-cCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEecc
Confidence 367899999999999999999998 899887664 4999999999999999876321 0
Q ss_pred -----------CCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh----hCCC--
Q 017413 172 -----------RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----KYPE-- 234 (372)
Q Consensus 172 -----------~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~----eYp~-- 234 (372)
...+....++|+++++||+|+||+||++| +++||+|||+|||+.|||||+++|+||++ +||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~yp~~~ 238 (399)
T 1zor_A 160 ENKTLLVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISE-KVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELEKAG 238 (399)
T ss_dssp SCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred ccccceeeccCCceEEEEEEecHHHHHHHHHHHHHHHHHh-CCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccCCCCc
Confidence 12344445889999999999999999998 56899999999999999999999999997 9995
Q ss_pred ceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCc-eeEeccCCCCccc----ccCC
Q 017413 235 ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG-IALAEAVHGSAPD----IAGK 309 (372)
Q Consensus 235 I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~-a~FEp~HGsApd~----iaGk 309 (372)
|+++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|||++. +||||+||||||+ ||||
T Consensus 239 I~~~~~~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~~fEpvHGSAPdi~~~~iaGk 317 (399)
T 1zor_A 239 VNYRYMLIDDAAAQILRSEGGM-LWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGVYEFEAAHGTVRRHYYRYLKGE 317 (399)
T ss_dssp CCEEEEEHHHHHHHHHHSCCCS-EEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTCCEEEEESSCCCHHHHHHHTTTC
T ss_pred EEEEEEEHHHHHHHhccCCCce-EEEEccchHHHHHHHHHHhcCCccccceeEecCCCCeEEeCCCCcccccchhhhcCC
Confidence 9999999999999999999999 99999999999999999999999999999999987 8999999999993 5899
Q ss_pred CC-CChhhHHHHHHHHHhhcCcH-------HHHHHHHHHHHHHHHcCCccCCCCCC--------CCCHHHHHHHHHHhC
Q 017413 310 NL-ANPTALLLSSVTMLRHLELH-------DKADRIQNAILSTIAEGKYRTADLGG--------SSTTSDFTKAICDHL 372 (372)
Q Consensus 310 ~i-ANPia~Ils~amML~~lg~~-------~~A~~i~~Av~~~l~~G~~~T~DlgG--------~~~T~e~~dav~~~l 372 (372)
++ |||+|+|||++|||+|||+. ++|++|++||.+++++| ++|+|||| .++|+||+|+|+++|
T Consensus 318 ~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~g-~~T~Dlgg~~~g~~~~~~~T~e~~daV~~~l 395 (399)
T 1zor_A 318 KTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESG-VITKDLQPFTEPPIDKYVTLEEFIDEVKKNL 395 (399)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCCGGGGGGCSSCCCCCCCHHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCCCCCHHHHHHHHHHHH
Confidence 95 99999999999999999975 57999999999999999 59999975 489999999999875
No 27
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=1.6e-101 Score=774.74 Aligned_cols=334 Identities=22% Similarity=0.244 Sum_probs=291.7
Q ss_pred ccCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCC
Q 017413 35 FSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG 114 (372)
Q Consensus 35 ~~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~ 114 (372)
|+|...+++|++|||||||||+|+.++++|.+.+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|..
T Consensus 1 ~~~i~~~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~ 80 (402)
T 4aoy_A 1 MSKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNA 80 (402)
T ss_dssp -CCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred CCcccccCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCc
Confidence 45555678999999999999999999999999999999999999999999999999999999999999999999999972
Q ss_pred ---------CCCCcccHHHHHhhcceeeeEeccCCCCCCCcCC--CccEEEeecCCCcccccceeeee------------
Q 017413 115 ---------KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD--DVNLITIRENTEGEYSGLEHQVV------------ 171 (372)
Q Consensus 115 ---------~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~--~iDivIvREnteG~Y~g~~~~~~------------ 171 (372)
++++|+|++||+.||||+|+||| .+||++++++ ++|||||||||||+|+|.|++..
T Consensus 81 ~~~~~~~l~~~~~s~n~~LR~~Ldlyan~rPv-~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~ 159 (402)
T 4aoy_A 81 QRVEEYNLKKMWKSPNGTIRAILDGTVFRAPI-VVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSE 159 (402)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHTCEEEEEEC-CCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEET
T ss_pred cccccccccccccChHHHHHHHhCCeEEeeeE-eccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeecc
Confidence 56889999999999999999999 8999998886 69999999999999999988652
Q ss_pred CC-------------eEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHh-hCC----
Q 017413 172 RG-------------VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYP---- 233 (372)
Q Consensus 172 ~~-------------~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp---- 233 (372)
+| .+....++|+++++||+|+||+||++|+ ++||+|||+|||+.|||||+++|+||++ +||
T Consensus 160 ~g~~~~~~~~~~~~~gv~~~~~~t~~~~eRiar~AF~~A~~~~-~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~ 238 (402)
T 4aoy_A 160 NGEVSRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMN-QDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFE 238 (402)
T ss_dssp TSCEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHT-CCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCcccccccccccCCeeEEEEEecHHHHHHHHHHHHHHHHHcC-CcEEEEECCccchhhhhHHHHHHHHHHHHhCccccc
Confidence 11 2344567789999999999999999985 7899999999999999999999999998 998
Q ss_pred --CceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC-ceeEeccCCCCccc----c
Q 017413 234 --EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG-GIALAEAVHGSAPD----I 306 (372)
Q Consensus 234 --~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~-~a~FEp~HGsApd~----i 306 (372)
+|+++|++||+++||||++|++| ||||+|||||||||++|+++||+||+||+|+|++ +++|||+||||||+ |
T Consensus 239 ~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~~~~fEp~HGSApd~~~~~i 317 (402)
T 4aoy_A 239 AKNLQYFYTLIDDAVARIIRSEGGM-VWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGKYEFEAAHGTVTRHYYKHL 317 (402)
T ss_dssp HTTCCEEEEEHHHHHHHHHTSCBCS-EEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTCCEEEEC-------------
T ss_pred CCCeEEEEEEHHHHHHHHhhCCCCc-EEEECCcchHHHHHHHHHhcCchhhccccccCCCCceEEeeccCCccccchhhc
Confidence 99999999999999999999999 9999999999999999999999999999999976 69999999999994 7
Q ss_pred cCCCC-CChhhHHHHHHHHHhhcCc-------HHHHHHHHHHHHHHHHcCCccCCCCCCCC--------CHHHHHHHHHH
Q 017413 307 AGKNL-ANPTALLLSSVTMLRHLEL-------HDKADRIQNAILSTIAEGKYRTADLGGSS--------TTSDFTKAICD 370 (372)
Q Consensus 307 aGk~i-ANPia~Ils~amML~~lg~-------~~~A~~i~~Av~~~l~~G~~~T~DlgG~~--------~T~e~~dav~~ 370 (372)
|||++ |||+|+|||++|||+|+|+ .++|++|++||.+++++|+ +|+||||.+ +|+||+|+|++
T Consensus 318 aGk~~~aNP~A~Ils~a~mL~~~g~~~~~~~l~~~A~~ie~Av~~~l~~g~-~T~Dlgg~~~~~~~~~~~T~ef~~av~~ 396 (402)
T 4aoy_A 318 KGEETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENGV-MTKDLASLSEVPEKKIVNTEDFLKEIRK 396 (402)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTE-EEHHHHTTCCCSCCEEECHHHHHHHHHH
T ss_pred cCCCcCcCcHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHcCC-CCcccccccccCCCCCcCHHHHHHHHHH
Confidence 99997 9999999999999999986 5899999999999999995 999999876 99999999998
Q ss_pred hC
Q 017413 371 HL 372 (372)
Q Consensus 371 ~l 372 (372)
+|
T Consensus 397 ~l 398 (402)
T 4aoy_A 397 TF 398 (402)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 28
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=1.5e-100 Score=774.17 Aligned_cols=332 Identities=23% Similarity=0.244 Sum_probs=301.1
Q ss_pred cCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCC
Q 017413 36 SSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK 115 (372)
Q Consensus 36 ~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~ 115 (372)
+|...+++|++||||||||||++++.+.+...+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|..+
T Consensus 17 ~k~~~~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~~ 96 (427)
T 2qfy_A 17 SKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEA 96 (427)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred ccccceeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCCc
Confidence 45555689999999999999999998877666889999999999999999999999999999999999999999999621
Q ss_pred ---------CCCcccHHHHHhhcceeeeEeccC--CC----CCCCcC-----------CCccEEEeecCCCcccc-----
Q 017413 116 ---------GHRSLNLTLRKELNLYANVRPCYS--LP----GYKTRY-----------DDVNLITIRENTEGEYS----- 164 (372)
Q Consensus 116 ---------~~~s~~~~LR~~ldlyanvRP~k~--~p----g~~~~~-----------~~iDivIvREnteG~Y~----- 164 (372)
+++|+|+.||+.||||+|+||++. +| |+++|+ .++|++||||||||+|+
T Consensus 97 ~~~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnteg~Y~~~e~t 176 (427)
T 2qfy_A 97 RVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDP 176 (427)
T ss_dssp HHHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESCT
T ss_pred ccchhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCccceeeecccc
Confidence 578999999999999999999874 74 445553 57999999999999999
Q ss_pred -cc---eeee----eCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHH-hhCCC-
Q 017413 165 -GL---EHQV----VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPE- 234 (372)
Q Consensus 165 -g~---~~~~----~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva-~eYp~- 234 (372)
|. ++.. .+++++. .++|+++++||+|+||+||++| +++||+|||+|||+.|||||+++|+||+ ++||+
T Consensus 177 eG~~~~~~~~~~~~~~~v~~~-~~~T~~~ieRIar~AFe~A~~r-~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~ 254 (427)
T 2qfy_A 177 TTAQPQTLKVYDYKGSGVAMA-MYNTDESIEGFAHSSFKLAIDK-KLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSK 254 (427)
T ss_dssp TTSCCEEEEEEEESSCEEEEE-EEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHH
T ss_pred CCccccccccccCCCceEEEE-EEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCccchhhhHHHHHHHHHHHHHhCCCc
Confidence 52 2222 1345544 4899999999999999999999 5689999999999999999999999999 79999
Q ss_pred -----ceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCCc--eeEeccCCCCc----
Q 017413 235 -----ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG--IALAEAVHGSA---- 303 (372)
Q Consensus 235 -----I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~--a~FEp~HGsAp---- 303 (372)
|+++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|||++. ++|||+|||||
T Consensus 255 ~~~~~I~~e~~~VD~~amqlV~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~ 333 (427)
T 2qfy_A 255 FEQLGIHYEHRLIDDMVAQMIKSKGGF-IMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYR 333 (427)
T ss_dssp HHHHTCCEEEEEHHHHHHHHHHSCEEE-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHH
T ss_pred ccCCeEEEEEEEHHHHHHHHHhCCCce-EEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecCCCCCcccccc
Confidence 9999999999999999999999 99999999999999999999999999999999986 89999999999
Q ss_pred -ccccCCCC-CChhhHHHHHHHHHhhcCcH-------HHHHHHHHHHHHHHH-cCCccCCCCCC---------CCCHHHH
Q 017413 304 -PDIAGKNL-ANPTALLLSSVTMLRHLELH-------DKADRIQNAILSTIA-EGKYRTADLGG---------SSTTSDF 364 (372)
Q Consensus 304 -d~iaGk~i-ANPia~Ils~amML~~lg~~-------~~A~~i~~Av~~~l~-~G~~~T~DlgG---------~~~T~e~ 364 (372)
| ||||++ |||+|+|||++|||+|||+. ++|++|++||.++++ +| ++|+|||| .++|+||
T Consensus 334 ~d-iAGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~~G-~~T~Dlgg~~g~~~~~~~~~T~e~ 411 (427)
T 2qfy_A 334 KY-QKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDG-IMTKDLALACGNNERSAYVTTEEF 411 (427)
T ss_dssp HH-HTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHTTCCSGGGCCCHHHH
T ss_pred hh-hcCCCCccCcHHHHHHHHHHHHHhCcccCcchhHHHHHHHHHHHHHHHHhCC-CccccccccCCccccCCCCCHHHH
Confidence 6 899995 99999999999999999976 899999999999999 99 59999975 4799999
Q ss_pred HHHHHHhC
Q 017413 365 TKAICDHL 372 (372)
Q Consensus 365 ~dav~~~l 372 (372)
+|+|+++|
T Consensus 412 ~daV~~~l 419 (427)
T 2qfy_A 412 LDAVEKRL 419 (427)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 29
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=97.44 E-value=0.003 Score=65.24 Aligned_cols=188 Identities=13% Similarity=0.082 Sum_probs=127.5
Q ss_pred eeeeeCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhC--CCceeeeE-eHH
Q 017413 167 EHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY--PEITYEEV-VID 243 (372)
Q Consensus 167 ~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eY--p~I~~~~~-~vD 243 (372)
+|....|-.+..+-.-..-++.+++.|..+||..|-.-|.-.|+.-. -|.-..+-+++.-++| .+++++-| .++
T Consensus 443 eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HDa~lI~kV~~yL~~hdt~GLdi~Im~p~~ 519 (738)
T 2b0t_A 443 EHDVEANDIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDPERA---HDRNLASLVEKYLADHDTEGLDIQILSPVE 519 (738)
T ss_dssp EEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCTTCH---HHHHHHHHHHHHHTTSCCTTCCEEEECHHH
T ss_pred eccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 56666676676666678889999999999999988766665554332 2333333344444454 35566656 356
Q ss_pred HHHHHHHhCCCCccEE-EcCCcchhhHHHHHhhh--cCCCCcccccccCCCceeEecc-CCCCccccc-----CCCCCCh
Q 017413 244 NCCMMLVKNPAAFDVL-VMPNLYGDIISDLCAGL--IGGLGLTPSCNIGEGGIALAEA-VHGSAPDIA-----GKNLANP 314 (372)
Q Consensus 244 a~~~~Lv~~P~~fdVi-v~~NlfGDIlSDlaa~l--~GglGl~pSanig~~~a~FEp~-HGsApd~ia-----Gk~iANP 314 (372)
++-..|=+=-..-|.| ||.|..=|+|+||.--| --|.=|.+-.=+=...+|||+. -||||.|.. |-=.=+-
T Consensus 520 A~~~slerir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GGGLfETGAGGSAPKHVqQ~~eEnhLRWDS 599 (738)
T 2b0t_A 520 ATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQVQEENHLRWDS 599 (738)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTTSCEEEECCSSCCCHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCCccccCCCCcCchHHHHHHHHcCccchhh
Confidence 6655554444566755 99999999999998744 2222222111112245899995 589999721 4447788
Q ss_pred hhHHHHHHHHHhhcCcH-------HHHHHHHHHHHHHHHcCCccCCCCCC
Q 017413 315 TALLLSSVTMLRHLELH-------DKADRIQNAILSTIAEGKYRTADLGG 357 (372)
Q Consensus 315 ia~Ils~amML~~lg~~-------~~A~~i~~Av~~~l~~G~~~T~DlgG 357 (372)
+|-+|+.+--|+||+.. --|+.+++|..+.|++.+--.+-.|.
T Consensus 600 LGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvGe 649 (738)
T 2b0t_A 600 LGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKSPSRKVGE 649 (738)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCSCCSSTTS
T ss_pred HHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccCC
Confidence 99999999999999863 33899999999999998744445553
No 30
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=97.44 E-value=0.0029 Score=65.31 Aligned_cols=188 Identities=14% Similarity=0.128 Sum_probs=127.3
Q ss_pred eeeeeCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhC--CCceeeeE-eHH
Q 017413 167 EHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY--PEITYEEV-VID 243 (372)
Q Consensus 167 ~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eY--p~I~~~~~-~vD 243 (372)
+|....|-.+..+-.-..-++.+++.|..+||..|-.-|.-.|+.-. -|.-..+-+++.-++| .+++++-| .++
T Consensus 447 eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HDa~lI~kV~~yL~~hdt~GLdi~Im~p~~ 523 (741)
T 1itw_A 447 EQSVEAGDIWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLDPARA---HDAQVIAKVERYLKDYDTSGLDIRILSPVE 523 (741)
T ss_dssp EEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECCTTSH---HHHHHHHHHHHHHTTSCCTTCCEEEECHHH
T ss_pred EccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 56666676676666678889999999999999988766665554332 2333333344444454 35566656 356
Q ss_pred HHHHHHHhCCCCccEE-EcCCcchhhHHHHHhhh--cCCCCcccccccCCCceeEecc-CCCCccccc-----CCCCCCh
Q 017413 244 NCCMMLVKNPAAFDVL-VMPNLYGDIISDLCAGL--IGGLGLTPSCNIGEGGIALAEA-VHGSAPDIA-----GKNLANP 314 (372)
Q Consensus 244 a~~~~Lv~~P~~fdVi-v~~NlfGDIlSDlaa~l--~GglGl~pSanig~~~a~FEp~-HGsApd~ia-----Gk~iANP 314 (372)
++-..|=+=-..-|.| ||.|..=|+|+||.--| --|.=|.+-.=+=...+|||+. -||||.|.. |-=.=+-
T Consensus 524 A~~~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GGGLfETGAGGSAPKHVqQ~~eEnhLRWDS 603 (741)
T 1itw_A 524 ATRFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGSAPKHVQQFLEEGYLRWDS 603 (741)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTTSCEEEESCSSCCCHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCCccccCCCCcCchHHHHHHHHcCccchhh
Confidence 6655554444566755 99999999999998744 2222222211112245899995 589999721 4447788
Q ss_pred hhHHHHHHHHHhhcCcH-------HHHHHHHHHHHHHHHcCCccCCCCCC
Q 017413 315 TALLLSSVTMLRHLELH-------DKADRIQNAILSTIAEGKYRTADLGG 357 (372)
Q Consensus 315 ia~Ils~amML~~lg~~-------~~A~~i~~Av~~~l~~G~~~T~DlgG 357 (372)
+|-+|+.+--|+||+.. --|+.+++|..+.|++.+--.+-.|.
T Consensus 604 LGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvGe 653 (741)
T 1itw_A 604 LGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARKVGE 653 (741)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCSCCSSSSS
T ss_pred HHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccCC
Confidence 99999999999999852 33899999999999998744445553
No 31
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=96.88 E-value=0.0078 Score=58.89 Aligned_cols=134 Identities=13% Similarity=0.060 Sum_probs=86.2
Q ss_pred cccHHHHHHHHHHHHHHHHh-CC--CCceEEEe-cCcccccchHHH--------HHHHHHHHhhCCCceee-eEeHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKT-HG--RERVSAIH-KANIMQKTDGLF--------LKCCREVAEKYPEITYE-EVVIDNCC 246 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~-r~--rk~Vt~v~-KaNvl~~tdglf--------~~~~~eva~eYp~I~~~-~~~vDa~~ 246 (372)
.+|.+.+.+.++.+.+--++ -| +.|+-+.- .-+.- -.|+| +-..++..++ +++++ .+-.|++.
T Consensus 179 ~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~gLNPHAG--E~G~~G~EE~~iI~PAi~~lr~~--Gi~~~GP~paDt~F 254 (334)
T 3lxy_A 179 AITQASLHEVITILDNDLKTKFGITQPQIYVCGLNPHAG--EGGHMGHEEIDTIIPALNTLRQQ--GINLIGPLPADTLF 254 (334)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEECSSGGGG--GGGTTCSHHHHTHHHHHHHHHHT--TCCEEEEECHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCC--CCCCCCchhHHHHHHHHHHHHHC--CCceeCCCChHHhc
Confidence 56999999999998887665 33 24554441 11110 12333 3444444444 67664 56778887
Q ss_pred HHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHHH
Q 017413 247 MMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTM 324 (372)
Q Consensus 247 ~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~amM 324 (372)
.+-.+ .+||++|+.... .+---.--+++--+.|+--. .----|.||||.| |||||+|||.+++-|.-+.
T Consensus 255 ~~~~~--~~~D~vlaMYHD------QGlip~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-IAGkG~A~~~S~~~Ai~~A 325 (334)
T 3lxy_A 255 QPKYL--QHADAVLAMYHD------QGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALE-LAATGTADVGSFITALNLA 325 (334)
T ss_dssp SHHHH--TTCSEEEESSHH------HHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGG-GTTTTCSCCHHHHHHHHHH
T ss_pred Chhhh--ccCCEEEEcccc------hhhHhHHhcccCccEEEecCCCeeeecCCCCcchh-hccCCCCChHHHHHHHHHH
Confidence 65554 799999998753 43333333444456676433 3345689999999 9999999999999887765
Q ss_pred Hh
Q 017413 325 LR 326 (372)
Q Consensus 325 L~ 326 (372)
.+
T Consensus 326 ~~ 327 (334)
T 3lxy_A 326 IK 327 (334)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 32
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=95.14 E-value=0.035 Score=54.17 Aligned_cols=134 Identities=17% Similarity=0.157 Sum_probs=86.5
Q ss_pred cccHHHHHHHHHHHHHHHHhCC--CCceEE-EecCcccccchHHHH--------HHHHHHHhhCCCceee-eEeHHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKTHG--RERVSA-IHKANIMQKTDGLFL--------KCCREVAEKYPEITYE-EVVIDNCCM 247 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~r~--rk~Vt~-v~KaNvl~~tdglf~--------~~~~eva~eYp~I~~~-~~~vDa~~~ 247 (372)
.+|++.+.+.+|...++-++-| +.|+-+ .-.-+.- -.|+|= -..++..+ .++.+. ..--|.+..
T Consensus 181 ~it~e~i~~~i~~~~~L~~~fgi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~PAi~~~r~--~Gi~~~GP~paDT~F~ 256 (330)
T 2hi1_A 181 TLSTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAG--ENGLFGDEETRILTPAITDARA--KGMDVYGPCPPDTVFL 256 (330)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCSSCEEEEECSSGGGS--STTSCCHHHHHTHHHHHHHHHT--TTCEEEEEECHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCC--CCCCCCHhHHHHHHHHHHHHHH--CCCceeCCCCchhhcc
Confidence 4799999999999998333233 234422 2222221 123431 12222222 367664 566788876
Q ss_pred HHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHHHH
Q 017413 248 MLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTML 325 (372)
Q Consensus 248 ~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~amML 325 (372)
+-.+ .+||++|+. | -|++---+--+|+--+.|+--. .----|-||||.| |||||+|||.+++-|.-+..
T Consensus 257 ~~~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-IAGkG~A~~~Sl~~Ai~~A~ 327 (330)
T 2hi1_A 257 QAYE--GQYDMVVAM--Y----HDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFD-IAWTGKAKSESMAVSIKLAM 327 (330)
T ss_dssp HHHT--TSCSEEEES--S----HHHHHHHHHHCC-CCSEEEEETSSSEEEEESCCCCTT-TTTTTCCCCHHHHHHHHHHH
T ss_pred cccc--ccCCEEEEc--c----cccccHhHhhcccCcceEEecCCCEEEecCCCCcccc-ccCCCCCChHHHHHHHHHHH
Confidence 6544 699999863 3 3676666667777778887543 3345689999999 99999999999998887654
Q ss_pred h
Q 017413 326 R 326 (372)
Q Consensus 326 ~ 326 (372)
+
T Consensus 328 ~ 328 (330)
T 2hi1_A 328 Q 328 (330)
T ss_dssp H
T ss_pred H
Confidence 3
No 33
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=93.56 E-value=0.039 Score=54.15 Aligned_cols=131 Identities=20% Similarity=0.128 Sum_probs=76.3
Q ss_pred cccHHHHHHHHHHHHHHHHhCCC--CceEE-EecCcccccchHHH-HH-------HHHHHHhhCCCceee-eEeHHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKTHGR--ERVSA-IHKANIMQKTDGLF-LK-------CCREVAEKYPEITYE-EVVIDNCCM 247 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~r~r--k~Vt~-v~KaNvl~~tdglf-~~-------~~~eva~eYp~I~~~-~~~vDa~~~ 247 (372)
.+|++.+.+.++...+.-++-+. .|+-+ .-.-+.- -+|+| +| +.++..+ .++.+. ..-.|.+.
T Consensus 196 ~It~~~I~~~i~~~~~~l~~fgi~~PrIaV~GLNPHaG--E~G~~G~EE~~iI~Pai~~l~~--~gi~v~GP~paDt~F- 270 (349)
T 4aty_A 196 RLDQRHVERAARAAVQALQLMGIAHPVVGLMGINPHAG--EGGLFGRDDIDITEPVARKLRD--DGMTVIGPQGADLLL- 270 (349)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTC-CCCCEEEECSSGGGG--TTTTTCSHHHHTHHHHHHHHHH--C-CCEEEEECHHHHT-
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCC--ccccccchHHHHHHHHHHHHHH--CCCeEeCCCchhhhh-
Confidence 56888888888877666555442 23322 2222221 13343 11 2233333 355544 45668765
Q ss_pred HHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHHHH
Q 017413 248 MLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTML 325 (372)
Q Consensus 248 ~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~amML 325 (372)
.+.+||++|+ ||= |++---+--++.--+.|+.-. .----|.||||.| |||||+|||.+++-|.-+..
T Consensus 271 ----~~~~~D~vla--MYH----DQgl~p~K~l~f~~~vnitlGLp~iRtS~dHGta~d-iagkg~a~~~s~~~Ai~~a~ 339 (349)
T 4aty_A 271 ----TNPDIDVFVA--MYH----DQGHIPVKLRAGRHSAALSIGAGVLFSSVGHGSGFD-IAGTLLADPAPLLGAIRLVT 339 (349)
T ss_dssp ----TCTTCSEEEE--SSH----HHHHHHHHHHHTTSEEEEEESSSSEEEECCSCCCTT-STTTTCCCCHHHHHHHHHHH
T ss_pred ----ccCCCCEEEE--ccc----ccchHHHHhcccCCcEEEecCCCeeEeCCCCChhhh-hccCCCCChHHHHHHHHHHH
Confidence 2468999987 443 454333333444446665432 3335689999999 99999999999998887765
Q ss_pred h
Q 017413 326 R 326 (372)
Q Consensus 326 ~ 326 (372)
.
T Consensus 340 ~ 340 (349)
T 4aty_A 340 T 340 (349)
T ss_dssp H
T ss_pred H
Confidence 4
No 34
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=93.50 E-value=0.04 Score=53.74 Aligned_cols=134 Identities=15% Similarity=0.131 Sum_probs=84.7
Q ss_pred cccHHHHHHHHHHHHHHHHh-CC--CCceEE-EecCcccccchHHHH--------HHHHHHHhhCCCceee-eEeHHHHH
Q 017413 180 IITRQASLRVAEYAFHYAKT-HG--RERVSA-IHKANIMQKTDGLFL--------KCCREVAEKYPEITYE-EVVIDNCC 246 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~-r~--rk~Vt~-v~KaNvl~~tdglf~--------~~~~eva~eYp~I~~~-~~~vDa~~ 246 (372)
.+|++.+.+.++...+--++ -| +.|+-+ .-.-+.- -.|+|= -..++..++ ++.+. ..--|.+.
T Consensus 174 ~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~Pai~~~r~~--Gi~~~GP~paDT~F 249 (328)
T 1yxo_A 174 AISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAG--EGGHLGREEIEVIEPCLERLRGE--GLDLIGPLPADTLF 249 (328)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGG--TTTTTCSHHHHTHHHHHHHHHTT--TCEEEEEECHHHHT
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCC--CCCCCCHhHHHHHHHHHHHHHHC--CCceeCCCCchhhc
Confidence 46999999999988875554 23 234422 2222221 123431 222333233 66663 56678887
Q ss_pred HHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCCCCChhhHHHHHHHH
Q 017413 247 MMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTM 324 (372)
Q Consensus 247 ~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~iANPia~Ils~amM 324 (372)
.+-.+ .+||++|+. | -|++---.--+|+--+.|+--. .----|-||||.| |||||+|||.+++-|.-+.
T Consensus 250 ~~~~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-IAGkG~A~~~Sl~~Ai~~A 320 (328)
T 1yxo_A 250 TPKHL--EHCDAVLAM--Y----HDQGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALD-LAGSGRIDSGSLQVALETA 320 (328)
T ss_dssp SHHHH--TTCSEEEES--S----HHHHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCGG-GTTTCCCCCHHHHHHHHHH
T ss_pred ccccc--cCCCEEEEc--c----cccccHhHhhcccCcceEEecCCCEEEecCCCCcccc-ccCCCCCChHHHHHHHHHH
Confidence 65544 699999863 3 3565555555566667777533 3345689999999 9999999999999888765
Q ss_pred Hh
Q 017413 325 LR 326 (372)
Q Consensus 325 L~ 326 (372)
.+
T Consensus 321 ~~ 322 (328)
T 1yxo_A 321 YQ 322 (328)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 35
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=91.82 E-value=0.09 Score=51.92 Aligned_cols=78 Identities=19% Similarity=0.112 Sum_probs=53.3
Q ss_pred EeHHHHHHHHHhCCCCccEEEcCCcchhhHHHHHhhhcCCCCcccccccCCC--ceeEeccCCCCcccccCCC-CCChhh
Q 017413 240 VVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG--GIALAEAVHGSAPDIAGKN-LANPTA 316 (372)
Q Consensus 240 ~~vDa~~~~Lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~FEp~HGsApd~iaGk~-iANPia 316 (372)
.--|.+..+-.+ .+||.+|+. | -|++---.--+|+--+.|+.-. .----|-||||.| ||||| +|||.+
T Consensus 282 ~paDT~F~~~~~--~~~D~vlAM--Y----HDQGliplK~l~F~~gVNvTlGLP~IRTSvDHGTAfD-IAGkG~~Ad~~S 352 (367)
T 3tsn_A 282 LVADTAFTKTGL--KNCNRLVAM--Y----HDLALAPLKALYFDKSINVSLNLPIIRVSVDHGTAFD-KAYKNAKINTKS 352 (367)
T ss_dssp BCHHHHTSHHHH--HHCCEEEES--S----HHHHHHHHHHHCTTTCEEEEESSSSCEEECCCCSCTT-SCSSCCCCCCHH
T ss_pred cCchhhhccchh--cCCCEEEEc--c----ccCcchhhhhcccCccEEEecCCCeeeecCCCCcchh-hcCCCCcCChHH
Confidence 445666544332 579988873 3 4555444445555567777533 2335689999999 99999 999999
Q ss_pred HHHHHHHHHh
Q 017413 317 LLLSSVTMLR 326 (372)
Q Consensus 317 ~Ils~amML~ 326 (372)
++-|.-+..+
T Consensus 353 l~~Ai~~A~~ 362 (367)
T 3tsn_A 353 YFEAAKFAIN 362 (367)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988876544
No 36
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4
Probab=81.29 E-value=9.4 Score=36.77 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=78.1
Q ss_pred ccHHHHHHHHHHHHHHHHh-CCC--CceEEEecCcccc---cchHHHHHHHHHHHhhCCCceee-eEeHHHHHHHHHhCC
Q 017413 181 ITRQASLRVAEYAFHYAKT-HGR--ERVSAIHKANIMQ---KTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMMLVKNP 253 (372)
Q Consensus 181 ~Tr~~~eRiar~AFe~A~~-r~r--k~Vt~v~KaNvl~---~tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~Lv~~P 253 (372)
.|.+...++++.+-++|++ -|. .||-+. |+-. .+...-++..+...+. |++.++ .+--|+...
T Consensus 150 ~~~e~L~~~a~~~~~~a~~~~Gi~~PrValL---N~Ge~~~~g~e~v~~A~~ll~~~-~~i~~~G~ve~d~~~~------ 219 (336)
T 1u7n_A 150 NKPEHLVQYAVLGSFYAEKVRNVQNPRVGLL---NNGTEETKGSELTKKAFELLAAD-ETINFVGNVEARELLN------ 219 (336)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCSSCCEEEE---CSCC----CCHHHHHHHHHHHHC-TTSCEEEEECGGGGGG------
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEEEE---eCcCCCCCCCHHHHHHHHHHhcC-CCCeEEeccCCCcccc------
Confidence 3677788888888899998 443 577765 4321 1223345555544434 788775 344454433
Q ss_pred CCccEEEcCCcchhhHHHHH------------hhhcC-C----CCcc---cccccCCCceeEec-cCCCCc-------cc
Q 017413 254 AAFDVLVMPNLYGDIISDLC------------AGLIG-G----LGLT---PSCNIGEGGIALAE-AVHGSA-------PD 305 (372)
Q Consensus 254 ~~fdViv~~NlfGDIlSDla------------a~l~G-g----lGl~---pSanig~~~a~FEp-~HGsAp-------d~ 305 (372)
+.+||+||.-.-|+|.--.. ..+.+ + +|+. |+- ..-..-+.+ .||.|+ +
T Consensus 220 g~~DvvV~d~~~GNi~lK~~eg~~~~~~~~~k~~f~~~~~~~~lg~~li~~~l--~~l~~~~d~~~~gga~llG~~~pv- 296 (336)
T 1u7n_A 220 GVADVVVTDGFTGNAVLKSIEGTAMNMMSLLKTAILSEGVKGKMGALLLKNAL--HGMKDEMDYSKHGGAVLFGLKAPV- 296 (336)
T ss_dssp CSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------CHHHHHHHH--HHHHHHTCGGGGCCEEEETBSSCE-
T ss_pred CCCCEEEeCcchhhHHHHHHHhhHHHHHHHHHHHhccCCchhhhhhhhhhhhH--HHHHhccCccccccceeecCcCcE-
Confidence 78999998555688877766 22222 1 1110 000 000000001 587776 8
Q ss_pred ccCCCCCChhhHHHHHHHHHhh
Q 017413 306 IAGKNLANPTALLLSSVTMLRH 327 (372)
Q Consensus 306 iaGk~iANPia~Ils~amML~~ 327 (372)
+.+++.+|+-+.+.+..+..+.
T Consensus 297 i~~~g~a~~~~i~~ai~~A~~~ 318 (336)
T 1u7n_A 297 IKTHGATGPDAVRYTIRQIHTM 318 (336)
T ss_dssp EECCTTCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHH
Confidence 9999999999998888765443
No 37
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=76.05 E-value=15 Score=35.48 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=85.0
Q ss_pred ccHHHHHHHHHHHHHHHHh-CCC--CceEEEecCcccc---cchHHHHHHHHHHHhhCCCceee-eEeHHHHHHHHHhCC
Q 017413 181 ITRQASLRVAEYAFHYAKT-HGR--ERVSAIHKANIMQ---KTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMMLVKNP 253 (372)
Q Consensus 181 ~Tr~~~eRiar~AFe~A~~-r~r--k~Vt~v~KaNvl~---~tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~Lv~~P 253 (372)
.|.+...++++.+-++|++ -|. .||-+. |+-. .+...-++.++...+. |++.++ .+--|+...
T Consensus 148 ~~~e~L~~~a~~~~~~a~~~~Gi~~PrValL---N~Ge~~~~g~e~i~~A~~ll~~~-~~i~~~G~ve~d~~~~------ 217 (345)
T 1vi1_A 148 AKPEHLVQYAIMGSVYSQQVRGVTSPRVGLL---NVGTEDKKGNELTKQTFQILKET-ANINFIGNVEARDLLD------ 217 (345)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCCSSCEEEEE---ESSSSTTCSCHHHHHHHHHHHSC-TTSEEEEEEEGGGGGG------
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEEEE---eCCCCCCCCCHHHHHHHHHHhcC-CCCeEEeccCCCcccc------
Confidence 4889999999999999998 553 567765 4311 1233445555544434 788775 455554433
Q ss_pred CCccEEEcCCcchhhHHHHHh------------hh----cCCCCcc---cccccCCCceeEec-cCCCCc-------ccc
Q 017413 254 AAFDVLVMPNLYGDIISDLCA------------GL----IGGLGLT---PSCNIGEGGIALAE-AVHGSA-------PDI 306 (372)
Q Consensus 254 ~~fdViv~~NlfGDIlSDlaa------------~l----~GglGl~---pSanig~~~a~FEp-~HGsAp-------d~i 306 (372)
+.+||+||.-.=|+|.--..= .+ .+.+|+. |... .-..-+.+ .||.|+ + +
T Consensus 218 G~aDVvV~d~~~GNI~lK~~eg~~~~~~~~~k~~f~~~~~~~lg~~l~~P~l~--~~~~~~d~~~~gga~llG~~~pv-i 294 (345)
T 1vi1_A 218 DVADVVVTDGFTGNVTLKTLEGSALSIFKMMRDVMTSTLTSKLAAAVLKPKLK--EMKMKMEYSNYGGASLFGLKAPV-I 294 (345)
T ss_dssp TSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-------CCHHHHH--HHHHHHCGGGSCCEEEETBSSCE-E
T ss_pred CCCCEEEeCchhhhHHHHHHHhhhhhhHHHHHHHhhcchhhhhhhhhccchHH--HHHhcCCccccccceeecCCccE-E
Confidence 789999985555887776662 11 1222210 1110 00000112 387776 8 9
Q ss_pred cCCCCCChhhHHHHHHHHHhhcCcHHHHHHHHHHH
Q 017413 307 AGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI 341 (372)
Q Consensus 307 aGk~iANPia~Ils~amML~~lg~~~~A~~i~~Av 341 (372)
.+++.+|+-+.+.|..+...... ...-+.|++.+
T Consensus 295 ~~~g~a~~~~i~~ai~~A~~~a~-~~~~~~i~~~~ 328 (345)
T 1vi1_A 295 KAHGSSDSNAVFRAIRQAREMVS-QNVAALIQEEV 328 (345)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHH-TTHHHHHHHHT
T ss_pred EeCCCCCHHHHHHHHHHHHHHHH-cCHHHHHHHHH
Confidence 99999999999888876554422 22344455544
No 38
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=75.43 E-value=11 Score=36.17 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=66.2
Q ss_pred ccHHHHHHHHHHHHHHHHh-CC-CCceEEEec---CcccccchHHHHHHHHHHHhhCCCceee-eEeHHHHHHHHHh---
Q 017413 181 ITRQASLRVAEYAFHYAKT-HG-RERVSAIHK---ANIMQKTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMMLVK--- 251 (372)
Q Consensus 181 ~Tr~~~eRiar~AFe~A~~-r~-rk~Vt~v~K---aNvl~~tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~Lv~--- 251 (372)
.|.+...+|++.+-++|++ -| ..||-+..= .+.-......-++.++...+++|++.++ .+-.|++...-+.
T Consensus 178 pt~e~l~~ia~~~~~~~~~~~Gi~PrVAlLs~ge~g~~~~~~~~~v~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~k 257 (333)
T 2af4_C 178 PSVEDVANIAVISAKTFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELAPDIAIDGELQVDAAIVPKVAASK 257 (333)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSCCEEEEECSCSTTSCCSHHHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCCcHHHHHHHHHHhccCCCcEEEecCcHHHhcCHHHHHhc
Confidence 4789999999999999988 44 356666542 1211011134556665555678999887 6778988655444
Q ss_pred ---CC--CCccEEEcCCcc-hhhHHHHHhhhcC
Q 017413 252 ---NP--AAFDVLVMPNLY-GDIISDLCAGLIG 278 (372)
Q Consensus 252 ---~P--~~fdViv~~Nlf-GDIlSDlaa~l~G 278 (372)
+| +++||+|+||+| |+|.--+..-+.|
T Consensus 258 ~~~s~~~G~aDvlV~pd~d~GNI~~K~l~~~~~ 290 (333)
T 2af4_C 258 APGSPVAGKANVFIFPDLNCGNIAYKIAQRLAK 290 (333)
T ss_dssp STTCSSTTSCCEEECSSHHHHHHHHHHHHHTSC
T ss_pred CCCCccCCcCCEEEECCchHHHHHHHHHHHccC
Confidence 44 579999999997 7888777654433
No 39
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Probab=73.36 E-value=15 Score=35.16 Aligned_cols=99 Identities=21% Similarity=0.211 Sum_probs=66.8
Q ss_pred cccHHHHHHHHHHHHHHHHhCC-CCceEEEecCccc--c-cchHHHHHHHHHHHhhCCCceee-eEeHHHHHHHHHh---
Q 017413 180 IITRQASLRVAEYAFHYAKTHG-RERVSAIHKANIM--Q-KTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMMLVK--- 251 (372)
Q Consensus 180 ~~Tr~~~eRiar~AFe~A~~r~-rk~Vt~v~KaNvl--~-~tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~Lv~--- 251 (372)
-.|.+...+|++.+-+++++-| ..||-+..=.+-- + .....-++.++...+++|++.++ .+-.|++...-+.
T Consensus 178 ~pt~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~ge~G~~~~~~~~~i~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~k 257 (329)
T 1td9_A 178 APDSQDLAEIAIESANTAKMFDIEPRVAMLSFSTKGSAKSDETEKVADAVKIAKEKAPELTLDGEFQFDAAFVPSVAEKK 257 (329)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTTCCCCEEEECSSSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCchHHHHHHHHHHHhhCCCCEEEeCCcHHHHcCHHHHHhh
Confidence 3488999999999999998754 3567665421111 1 11124556666555678998887 6778988755443
Q ss_pred ---CC--CCccEEEcCCcc-hhhHHHHHhhhcC
Q 017413 252 ---NP--AAFDVLVMPNLY-GDIISDLCAGLIG 278 (372)
Q Consensus 252 ---~P--~~fdViv~~Nlf-GDIlSDlaa~l~G 278 (372)
+| +++||+|+||+| |+|.--+..-+.|
T Consensus 258 ~~~s~~~G~aDvlV~pd~d~GNI~~K~l~~~~~ 290 (329)
T 1td9_A 258 APDSEIKGDANVFVFPSLEAGNIGYKIAQRLGN 290 (329)
T ss_dssp CTTSSCSSCCSEEECSSHHHHHHHHHHHHHTTT
T ss_pred CCCCccCCCCCEEEECChhHHHHHHHHHHHhcC
Confidence 33 579999999997 7888777655443
No 40
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=70.12 E-value=18 Score=28.79 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcccCCCCCCCC
Q 017413 40 TPITATLFPGDGIGPEIAE-SVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHR 118 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~-~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~~~p~~~~~~ 118 (372)
+..+|.+.=|.|++-.++. ..+++++..|++++.+..+++. +.+ .+.++|++|.+|-..
T Consensus 2 ~mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~---------~~~----~~~~~Dvil~~pqv~------- 61 (106)
T 1e2b_A 2 EKKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL---------AGE----KGQNADVVLLGPQIA------- 61 (106)
T ss_dssp CCEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSS---------TTH----HHHHCSEEEECTTSG-------
T ss_pred CCcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHH---------HHh----hccCCCEEEEccchh-------
Confidence 3468999999999988654 5556777779998877766653 222 357899999988432
Q ss_pred cccHHHHHhhc
Q 017413 119 SLNLTLRKELN 129 (372)
Q Consensus 119 s~~~~LR~~ld 129 (372)
...-.+++.++
T Consensus 62 ~~~~~~~~~~~ 72 (106)
T 1e2b_A 62 YMLPEIQRLLP 72 (106)
T ss_dssp GGHHHHHHHSS
T ss_pred hhHHHHHHHhc
Confidence 23445666554
No 41
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=69.39 E-value=26 Score=33.09 Aligned_cols=210 Identities=14% Similarity=0.225 Sum_probs=113.9
Q ss_pred cccccC--CCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccc----cC-----CCCcHH----HHH
Q 017413 32 ARAFSS--DITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPR----TQ-----SFLTWE----SLE 96 (372)
Q Consensus 32 ~~~~~~--~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~----~g-----~~lp~e----tl~ 96 (372)
+|.+.+ ...+.+|++-.|+ -+++++++.++++.- . ++ .+.+|....-+ .+ ..-+++ ...
T Consensus 7 ~~~~~~~~~~~~kriv~~e~~--d~~vl~Aa~~a~~eg-~-~~--~ILvG~~~~I~~~~~~~~eIid~~~~~~aar~a~~ 80 (291)
T 3uf6_A 7 SRFFSDVAETSSFVFAVAGAD--DEVVLETIRLALKQK-L-GK--FLLFGKKEDKTLTANESVTWIQTDTAEAAAQGAIL 80 (291)
T ss_dssp CCSSCSSCCCCCCEEEEETCC--SHHHHHHHHHHHHTT-C-CE--EEEEESSCCHHHHTSTTEEEEECCSHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCeEEEeCCC--CHHHHHHHHHHHHcC-C-ce--EEEEcCHHHHhhhccCCCEEECCCChHHHHHHHHH
Confidence 455533 2345788888665 589999999988862 1 22 34455322100 00 001112 222
Q ss_pred HHH--hcCeEEECcccCCCCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCe
Q 017413 97 SVR--RNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGV 174 (372)
Q Consensus 97 ~i~--~~da~L~g~~~~p~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~ 174 (372)
.++ ++|+.++|.++| ...||..|+--..+||.+.+. .+-++++ ....|.+.
T Consensus 81 mV~~G~ADa~vsG~~~t---------~~~lr~~l~~~~G~r~~~~vs-------~~~~~~~-p~~~~~~~---------- 133 (291)
T 3uf6_A 81 AVKNKEADILVKGFIPT---------ATLMHHVLKKENGLRTDQLLS-------QIAIFDI-PTYHKPLL---------- 133 (291)
T ss_dssp HHHTTSCSEEEECSSCH---------HHHHHHHTCGGGSCCCSSCCE-------EEEEEEC-TTSSSCEE----------
T ss_pred HHHCCCCCEEEECCCCh---------HHHHHHHhccccCCCCCceee-------EEEEEEE-cCCCCcEE----------
Confidence 233 479999998644 235565554333345432110 0122222 11112110
Q ss_pred EEEeecc---cHHHHHHHHHHHHHHHHhCCC--CceEEE---ecCcccccchHHHHHHHHHHHhhC-CCceee-eEeHHH
Q 017413 175 VESLKII---TRQASLRVAEYAFHYAKTHGR--ERVSAI---HKANIMQKTDGLFLKCCREVAEKY-PEITYE-EVVIDN 244 (372)
Q Consensus 175 a~~~~~~---Tr~~~eRiar~AFe~A~~r~r--k~Vt~v---~KaNvl~~tdglf~~~~~eva~eY-p~I~~~-~~~vDa 244 (372)
..++-++ |-+.-..|+..+-++|+.-|. .||-+. +|.|-. ...-++. .++.+++ |++.++ ++..|+
T Consensus 134 ~~D~gvN~~P~~e~la~ia~~aa~~ar~~Gie~PkVAlLS~s~~gs~~---~~~~~~A-~~llk~~~~~~~vdGel~~D~ 209 (291)
T 3uf6_A 134 ITDCAMNVAPKTKEKIAITENALAVAHQIGITNPKIALLSAVEEVTAK---MPSTLEA-QEVVQHFGNQISVSGPLALDV 209 (291)
T ss_dssp EECSSSCSSCCHHHHHHHHHHHHHHHHHHTCCSCCEEEECSCSSCCTT---SHHHHHH-HHHHHHHTTTSCEEEEECHHH
T ss_pred EeeceeecCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCccCCcC---chHHHHH-HHHHHhhCCCCEEEecchHHH
Confidence 1111122 667888889999999987654 466554 444411 1112233 3455554 999888 467898
Q ss_pred HHHHHH------hCC--CCccEEEcCCc-chhhHHHHHhhhcC
Q 017413 245 CCMMLV------KNP--AAFDVLVMPNL-YGDIISDLCAGLIG 278 (372)
Q Consensus 245 ~~~~Lv------~~P--~~fdViv~~Nl-fGDIlSDlaa~l~G 278 (372)
+...=+ .+| ++.||+|+||+ -|||+.-+...+.|
T Consensus 210 Al~~~~~~~k~p~s~vaG~Anvli~P~l~agNi~yK~l~~~~~ 252 (291)
T 3uf6_A 210 AISKEAALHKGITDSSAGEADILIAPNIETGNALYKSLVYFAG 252 (291)
T ss_dssp HHCHHHHHHTTCCCTTTTCCSEEECSSHHHHHHHHHHHHHHSC
T ss_pred hcCHHHHHhhCCCCccCCCCCEEEECChHHHHHHHHHHHHhcC
Confidence 754322 223 46899999998 89999999886654
No 42
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=68.98 E-value=19 Score=34.40 Aligned_cols=98 Identities=14% Similarity=0.132 Sum_probs=66.2
Q ss_pred ccHHHHHHHHHHHHHHHHhCC-CCceEEEecCccccc---chHHHHHHHHHHHhhCCCceee-eEeHHHHHHHHHh----
Q 017413 181 ITRQASLRVAEYAFHYAKTHG-RERVSAIHKANIMQK---TDGLFLKCCREVAEKYPEITYE-EVVIDNCCMMLVK---- 251 (372)
Q Consensus 181 ~Tr~~~eRiar~AFe~A~~r~-rk~Vt~v~KaNvl~~---tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~Lv~---- 251 (372)
.|.+...+|++.+-+++++-| ..||-+..=.+.-.. ....-++.++...+++|++.++ .+-.|++...-+.
T Consensus 183 ~t~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~~~~G~e~~~~~~~i~~A~~llk~~~~~~~v~Gpl~~D~a~~~~~~~~k~ 262 (337)
T 1r5j_A 183 PTAQELAEIAVNTAETAKIFDIDPKIAMLSFSTKGSGKAPQVDKVREATEIATGLNPDLALDGELQFDAAFVPETAAIKA 262 (337)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCCCEEEECSCSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEEecCccCCCCCCCcHHHHHHHHHHhccCCCcEEEecCcHHHhcCHHHHHhhC
Confidence 488999999999999998854 345655432221111 1112466666666689998887 5678888644332
Q ss_pred --CC--CCccEEEcCCcc-hhhHHHHHhhhcC
Q 017413 252 --NP--AAFDVLVMPNLY-GDIISDLCAGLIG 278 (372)
Q Consensus 252 --~P--~~fdViv~~Nlf-GDIlSDlaa~l~G 278 (372)
+| +++||+|+||++ |+|.--+..-+.|
T Consensus 263 ~~s~~~G~aDvlv~p~~d~GnI~~K~l~~~~~ 294 (337)
T 1r5j_A 263 PDSAVAGQANTFVFPDLQSGNIGYKIAQRLGM 294 (337)
T ss_dssp CSCSSTTCCCEEECSSHHHHHHHHHHHHHTTC
T ss_pred CCCccCCCCCEEEECChHHHHHHHHHHHHhcC
Confidence 22 679999999996 8888877765544
No 43
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=66.98 E-value=75 Score=28.84 Aligned_cols=141 Identities=14% Similarity=0.155 Sum_probs=72.3
Q ss_pred cHHHHHHHHhcCeEEECcccCCCCCCC--CcccHH-HHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcc-cccc
Q 017413 91 TWESLESVRRNKVGLKGPMATPIGKGH--RSLNLT-LRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGE-YSGL 166 (372)
Q Consensus 91 p~etl~~i~~~da~L~g~~~~p~~~~~--~s~~~~-LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~-Y~g~ 166 (372)
.++.++.++++|.+++|.-+....... .|.... +|+ -+.+++||+...... +..
T Consensus 113 ~~~I~~~a~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~---------------------~~~PVlvv~~~~~~~~~~~- 170 (309)
T 3cis_A 113 VPTLVDMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLRH---------------------AHCPVVIIHDEDSVMPHPQ- 170 (309)
T ss_dssp HHHHHHHGGGEEEEEEESSCTTCCTTCCSCHHHHHHHHH---------------------CSSCEEEECTTCCCSCSSC-
T ss_pred HHHHHHHhcCCCEEEECCCCCccccccccCcHHHHHHHh---------------------CCCCEEEEcCCcccCCCCC-
Confidence 455666678999999998654321111 111111 111 125677777654321 011
Q ss_pred eeeeeCCeEEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCccccc--------------chHHHHHHHHHHHhhC
Q 017413 167 EHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQK--------------TDGLFLKCCREVAEKY 232 (372)
Q Consensus 167 ~~~~~~~~a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~--------------tdglf~~~~~eva~eY 232 (372)
...+...+. -.+.+++.+++|+++|+..+ .+|+++|=..-... ....+.+...++.+.|
T Consensus 171 ----~~~Ilv~~D--~s~~s~~al~~a~~la~~~~-a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 243 (309)
T 3cis_A 171 ----QAPVLVGVD--GSSASELATAIAFDEASRRN-VDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQERY 243 (309)
T ss_dssp ----CCCEEEECC--SSHHHHHHHHHHHHHHHHTT-CCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred ----CCeEEEEeC--CChHHHHHHHHHHHHHHhcC-CEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 111233332 23567899999999999874 57888873321110 0111223333333457
Q ss_pred CCceeeeEeH----HHHHHHHHhCCCCccEEEcCC
Q 017413 233 PEITYEEVVI----DNCCMMLVKNPAAFDVLVMPN 263 (372)
Q Consensus 233 p~I~~~~~~v----Da~~~~Lv~~P~~fdViv~~N 263 (372)
|++.++..+. .....+..+ +.|.||+..
T Consensus 244 ~~~~~~~~~~~g~~~~~I~~~a~---~adliV~G~ 275 (309)
T 3cis_A 244 PNVAITRVVVRDQPARQLVQRSE---EAQLVVVGS 275 (309)
T ss_dssp TTSCEEEEEESSCHHHHHHHHHT---TCSEEEEES
T ss_pred CCCcEEEEEEcCCHHHHHHHhhC---CCCEEEECC
Confidence 8887776543 222333343 788777643
No 44
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=65.47 E-value=39 Score=31.69 Aligned_cols=203 Identities=16% Similarity=0.158 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccc-cccC-------CCCcHHH---HHHHH--hcCeEEECc
Q 017413 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEID-PRTQ-------SFLTWES---LESVR--RNKVGLKGP 108 (372)
Q Consensus 42 ~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~-~~~g-------~~lp~et---l~~i~--~~da~L~g~ 108 (372)
.||++..|+ -+++++++.++++. ..+- .+.+.+|.+.. +..+ +.-|..+ .+.++ ++|+.++|.
T Consensus 2 kriv~~e~~--d~~vl~aa~~a~~~-~~~~-~~~iLvG~~~~l~~~~~~~Iv~~~~~~~~a~~a~~lV~~G~aDa~vsG~ 77 (279)
T 1yco_A 2 ITVSIAGGS--QPEILQLVKKALKE-AEQP-LQFIVFDTNENLDTENLWKYVHCSDEAAVAQEAVSLVATGQAQILLKGI 77 (279)
T ss_dssp EEEEEETCC--SHHHHHHHHHHHHH-CCSC-EEEEEEESSCCCCSSCCSEEEECSSHHHHHHHHHHHHHSTTCSEEEECS
T ss_pred cEEEEecCC--CHHHHHHHHHHHHh-CCCC-CeEEEEECHHHcCCCCCeEEEcCCCCHHHHHHHHHHHHCCCCCEEEeCC
Confidence 478888875 58999999999988 4300 12355554321 1011 0112222 23333 589999998
Q ss_pred ccCCCCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeec---ccHHH
Q 017413 109 MATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKI---ITRQA 185 (372)
Q Consensus 109 ~~~p~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~---~Tr~~ 185 (372)
++++ ..||-.+......+|- ..|. .+-++... . .+.+. ..++-+ -|-+.
T Consensus 78 ~~t~---------~~l~~~l~~~ig~~~g-~r~s------~~~~~~~p-~-~~~~~----------l~D~g~N~~p~~e~ 129 (279)
T 1yco_A 78 IQTH---------TLLKEMLKSEHQLKNK-PILS------HVAMVELP-A-GKTFL----------LTDCAMNIAPTQAT 129 (279)
T ss_dssp SCHH---------HHHHHHTCTTTCCBCS-SSCE------EEEEEECS-S-SCEEE----------EECSSSCSSCCHHH
T ss_pred CChH---------HHHHHHHHHhcCCCCC-CeEE------EEEEEEec-C-CCEEE----------EEeCCCCCCCCHHH
Confidence 8752 2344344311112222 1111 11111111 1 12110 011111 15677
Q ss_pred HHHHHHHHHHHHHhCCC--CceEEEe---cCcccccchHHHHHHHHHH--HhhCCCceee-eEeHHHHHHHHHh------
Q 017413 186 SLRVAEYAFHYAKTHGR--ERVSAIH---KANIMQKTDGLFLKCCREV--AEKYPEITYE-EVVIDNCCMMLVK------ 251 (372)
Q Consensus 186 ~eRiar~AFe~A~~r~r--k~Vt~v~---KaNvl~~tdglf~~~~~ev--a~eYp~I~~~-~~~vDa~~~~Lv~------ 251 (372)
-.+|+..+-++|+.-|. .||-+.. |.|- ....=++..+-+ .++.|++.++ ++..|++.-.=+.
T Consensus 130 l~~ia~~a~~~a~~lGi~~PkVAlLs~~~~g~~---~~~~~~~a~~l~k~l~~~~~~~~dG~i~~D~A~~~~~~~~k~~~ 206 (279)
T 1yco_A 130 LIEIVENAKEVAQKLGLHHPKIALLSAAENFNP---KMPSSVLAKEVTAHFNDQQEATVFGPLSLDLATSEEAVAHKRYS 206 (279)
T ss_dssp HHHHHHHHHHHHHHTTCSSCEEEEECSCSSCCT---TCHHHHHHHHHHHHHSSCSSCEEEEEECHHHHHCHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEeccccCCC---CChHHHHHHHHHHHHHhCCCCEEEeeCcHHhhcCHHHHHhcCCC
Confidence 88899999999998765 5666553 4441 112223333221 2234888776 5677877644433
Q ss_pred CC--CCccEEEcCCc-chhhHHHHHhhhcCC
Q 017413 252 NP--AAFDVLVMPNL-YGDIISDLCAGLIGG 279 (372)
Q Consensus 252 ~P--~~fdViv~~Nl-fGDIlSDlaa~l~Gg 279 (372)
++ +.-||+||||+ -|||+--+...+.|+
T Consensus 207 s~~~G~adVlV~Pd~~aGNi~~K~~~~~~~~ 237 (279)
T 1yco_A 207 GPIMGDADILVVPTIDVGNCLYKSLTLFGHA 237 (279)
T ss_dssp SSCSSCCSEEECSSHHHHHHHHHHHHHHSCC
T ss_pred CccCCCCCEEEECCchHHHHHHHHHHHhCCC
Confidence 43 36899999999 699999998877654
No 45
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura genomics, JCSG, protein structure initiative, PSI, joint CE structural genomics; 2.32A {Escherichia coli} SCOP: c.77.1.5
Probab=64.87 E-value=16 Score=35.42 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHHHHHHHhC-C-CCceEEEecCc---ccccchHHHHHHHHHHHhhCCCceee-eEeHHHHHHHHHh---
Q 017413 181 ITRQASLRVAEYAFHYAKTH-G-RERVSAIHKAN---IMQKTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMMLVK--- 251 (372)
Q Consensus 181 ~Tr~~~eRiar~AFe~A~~r-~-rk~Vt~v~KaN---vl~~tdglf~~~~~eva~eYp~I~~~-~~~vDa~~~~Lv~--- 251 (372)
.|.+...+|++.+-++|++- | ..||-+..=++ .-......-++.++...+++|++.++ .+-.|++...-+.
T Consensus 185 pt~e~l~~ia~~a~~~a~~~~Gi~PrVAlLs~ge~Gs~~~~~~~~i~~A~~llk~~~~~~~v~Gpl~~D~A~~~~~~~~k 264 (355)
T 1vmi_A 185 PTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANVQQATEIVRERAPKLVVDGELQFDAAFVPEVAAQK 264 (355)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSCCEEEEECSCSTTSSCSHHHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCCCCCccHHHHHHHHHHHhccCCCCEEEeCCChHHhhCHHHHhhc
Confidence 37889999999999999874 4 35676654222 11112223455555555678998887 6778887654444
Q ss_pred ---CC--CCccEEEcCCcc-hhhHHHHHhhhcC
Q 017413 252 ---NP--AAFDVLVMPNLY-GDIISDLCAGLIG 278 (372)
Q Consensus 252 ---~P--~~fdViv~~Nlf-GDIlSDlaa~l~G 278 (372)
+| +++||+|+||+| |+|.--+..-+.|
T Consensus 265 ~~~s~~~G~aDvlV~Pd~d~GNI~~K~l~~~~~ 297 (355)
T 1vmi_A 265 APASPLQGKANVMVFPSLEAGNIGYKIAQRLGG 297 (355)
T ss_dssp CTTCTTTTCCSEEECSSHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCCCCEEEECChhHHhHHHHHHHHccC
Confidence 43 579999999997 8888887665544
No 46
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=63.87 E-value=16 Score=32.60 Aligned_cols=90 Identities=10% Similarity=0.023 Sum_probs=49.0
Q ss_pred HHHHHHHHHh--CCCCceEEEecCcccccchHHHHHHHHHHHhhCCCce-eeeEeH-------H---HHHHHHHhCCC--
Q 017413 190 AEYAFHYAKT--HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIT-YEEVVI-------D---NCCMMLVKNPA-- 254 (372)
Q Consensus 190 ar~AFe~A~~--r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~-~~~~~v-------D---a~~~~Lv~~P~-- 254 (372)
.+.+.++..+ +|.+++.++.-..-.. +.....+-+++..+++|+++ ++..++ + ..+.++++...
T Consensus 111 g~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (291)
T 3l49_A 111 GAELALQMVADLGGKGNVLVFNGFYSVP-VCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNE 189 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCTTSH-HHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHHHHHHHcCCCceEEEEeCCCCCc-hHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 3344555555 6777888875322111 23445666777777888877 332221 1 23445555444
Q ss_pred -CccEEEcCCcchhhHHHHHhhhcCCCCcc
Q 017413 255 -AFDVLVMPNLYGDIISDLCAGLIGGLGLT 283 (372)
Q Consensus 255 -~fdViv~~NlfGDIlSDlaa~l~GglGl~ 283 (372)
++|.|+|.| |.++--+....-..|+-
T Consensus 190 ~~~~ai~~~~---d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 190 GDVGAIWACW---DVPMIGATQALQAAGRT 216 (291)
T ss_dssp TSCCEEEESS---HHHHHHHHHHHHHTTCC
T ss_pred CCcCEEEECC---CchHHHHHHHHHHcCCC
Confidence 899999988 54443333333334543
No 47
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=56.83 E-value=24 Score=30.87 Aligned_cols=72 Identities=14% Similarity=0.073 Sum_probs=43.4
Q ss_pred HHHHHHHHhC----CCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeH-----H---HHHHHHHhCCCCccE
Q 017413 191 EYAFHYAKTH----GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI-----D---NCCMMLVKNPAAFDV 258 (372)
Q Consensus 191 r~AFe~A~~r----~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~v-----D---a~~~~Lv~~P~~fdV 258 (372)
+.+.++..++ |.+++-++.-..-. .+.....+-+++..+++|++.+..... + ..+.++++...++|.
T Consensus 112 ~~~~~~l~~~~~~~G~~~i~~i~~~~~~-~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 190 (276)
T 3ksm_A 112 QLAARALLATLDLSKERNIALLRLRAGN-ASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPTIDG 190 (276)
T ss_dssp HHHHHHHHHHSCTTSCEEEEECBCCTTC-HHHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSCCCE
T ss_pred HHHHHHHHHhcCcCCCceEEEEEcCCCc-hhHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCceE
Confidence 3444444444 77788777532211 133456677777777888887653221 1 234566666567999
Q ss_pred EEcCC
Q 017413 259 LVMPN 263 (372)
Q Consensus 259 iv~~N 263 (372)
|+|.|
T Consensus 191 i~~~~ 195 (276)
T 3ksm_A 191 LFTPN 195 (276)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 99988
No 48
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=50.00 E-value=69 Score=27.83 Aligned_cols=89 Identities=8% Similarity=-0.025 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeH-----H---HHHHHHHhCCC-CccEE
Q 017413 189 VAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI-----D---NCCMMLVKNPA-AFDVL 259 (372)
Q Consensus 189 iar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~v-----D---a~~~~Lv~~P~-~fdVi 259 (372)
..+.|.++-.++|.+++-++.-..-.. +.....+-+.+..++++ +....... + ..+.++++... .+|.|
T Consensus 107 ~~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai 184 (272)
T 3o74_A 107 ASRQLAASLLSSAPRSIALIGARPELS-VSQARAGGFDEALQGYT-GEVRRYQGEAFSRECGQRLMQQLIDDLGGLPDAL 184 (272)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSH-HHHHHHHHHHHHTTTCC-SEEEEEEESSSSHHHHHHHHHHHHHHHTSCCSEE
T ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCc-cHHHHHHHHHHHHHHcC-CChheeecCCCCHHHHHHHHHHHHhcCCCCCcEE
Confidence 345566677777888887775322221 23445566666666663 44433221 1 23455666544 89999
Q ss_pred EcCCcchhhHHHHHhhhcCCCCc
Q 017413 260 VMPNLYGDIISDLCAGLIGGLGL 282 (372)
Q Consensus 260 v~~NlfGDIlSDlaa~l~GglGl 282 (372)
+|.| |.++--+....-..|+
T Consensus 185 ~~~~---d~~a~g~~~al~~~g~ 204 (272)
T 3o74_A 185 VTTS---YVLLQGVFDTLQARPV 204 (272)
T ss_dssp EESS---HHHHHHHHHHHHTSCG
T ss_pred EEeC---chHHHHHHHHHHHcCC
Confidence 9988 5554433333444555
No 49
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for structural genomics of infectious diseases, csgid; HET: TRS; 1.44A {Staphylococcus aureus subsp}
Probab=50.00 E-value=37 Score=32.59 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=63.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCC-CceEEEecCccc-cc--chHHHHHHHHHHHhhCC----Cceee-eEeHHHHHHHH---
Q 017413 182 TRQASLRVAEYAFHYAKTHGR-ERVSAIHKANIM-QK--TDGLFLKCCREVAEKYP----EITYE-EVVIDNCCMML--- 249 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~~r~r-k~Vt~v~KaNvl-~~--tdglf~~~~~eva~eYp----~I~~~-~~~vDa~~~~L--- 249 (372)
|.+.-..|+..+-++|+.-|. .||-+..=++.- .. +...-++.++-+.+.+| ++.++ ++..|++.-.-
T Consensus 177 ~~e~l~~ia~~a~~~a~~~Gi~PkVAlLs~s~~Gs~~~~~~~~~~~A~~llk~~~~~~~~~~~vdGpl~~D~A~~~~~~~ 256 (331)
T 4e4r_A 177 DSQGLAEIAVESAKSALSFGMDPKVAMLSFSTKGSAKSDDVTKVQEAVKLAQQKAEEEKLEAIIDGEFQFDAAIVPGVAE 256 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCEEEEECSSSTTSSCSHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECHHHHHCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeCCCCCCCCCCCcHHHHHHHHHHHhhCcCCCCCeEEEccCcHHHHcCHHHHH
Confidence 678888899999999997663 466555432211 11 11233444443333456 88887 57788875332
Q ss_pred ---HhCC--CCccEEEcCCc-chhhHHHHHhhhcCC
Q 017413 250 ---VKNP--AAFDVLVMPNL-YGDIISDLCAGLIGG 279 (372)
Q Consensus 250 ---v~~P--~~fdViv~~Nl-fGDIlSDlaa~l~Gg 279 (372)
..+| +++||+|+||+ -|+|+.-+..-+.|+
T Consensus 257 ~k~~~s~vaG~advli~P~l~aGNi~~K~l~~~~~a 292 (331)
T 4e4r_A 257 KKAPGAKLQGDANVFVFPSLEAGNIGYKIAQRLGGY 292 (331)
T ss_dssp HHSTTCSCSSCCCEEECSSHHHHHHHHHHHHHTTCC
T ss_pred hhCCCCccCCcCCEEEeCChhHHHHHHHHHHHhcCC
Confidence 2333 47999999999 699999998876654
No 50
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=48.50 E-value=67 Score=29.26 Aligned_cols=103 Identities=12% Similarity=0.030 Sum_probs=61.2
Q ss_pred CCCCCCccccccccc-----CCCCceEEEEEcCC----CCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCc-
Q 017413 22 NPNPNLALPIARAFS-----SDITPITATLFPGD----GIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLT- 91 (372)
Q Consensus 22 ~~~~~~~~~~~~~~~-----~~~~~~~I~vi~GD----GiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp- 91 (372)
-||.|+..+..-.+. ..+...+|.+|-|. |....+.+++.+.++..++++ +.+++............+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~ev--e~idL~~~pl~~~d~~~~d 87 (247)
T 2q62_A 10 LPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEV--KVFDPSGLPLPDAAPVSHP 87 (247)
T ss_dssp CTTSCTTTCCCCCGGGGCCCCCCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEE--EECCCTTCCCTTSSCTTSH
T ss_pred CchhhhhcCCCCChhhhhhhccCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEE--EEEEhhcCCCCcCCCCCCH
Confidence 466666655532221 12234689999775 677788888888777767544 446665422111111133
Q ss_pred --HHHHHHHHhcCeEEECcccCCCCCCCCcccHHHHHhhcce
Q 017413 92 --WESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLY 131 (372)
Q Consensus 92 --~etl~~i~~~da~L~g~~~~p~~~~~~s~~~~LR~~ldly 131 (372)
.+.++.++++|+++++. |.. +.+....|..-||..
T Consensus 88 ~~~~l~~~i~~AD~iI~~s---P~Y--n~sipa~LKn~iD~l 124 (247)
T 2q62_A 88 KVQELRELSIWSEGQVWVS---PER--HGAMTGIMKAQIDWI 124 (247)
T ss_dssp HHHHHHHHHHHCSEEEEEE---ECS--SSSCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHCCEEEEEe---CCC--CCCccHHHHHHHHHh
Confidence 34567889999999875 432 124556888888843
No 51
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=48.21 E-value=84 Score=23.82 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=47.4
Q ss_pred EEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCcee
Q 017413 175 VESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITY 237 (372)
Q Consensus 175 a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~ 237 (372)
-.++.=.|.+++.+.....++.|..+|.+.|.++|= + +.|.-++.+.++-+++|.|.-
T Consensus 6 ~lDLhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIHG----k-G~GvLr~~V~~~L~~~~~V~~ 63 (83)
T 2zqe_A 6 EVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHG----K-GTGALRQAIREALRRDKRVES 63 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECC----S-TTSHHHHHHHHHHHHCTTEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC----C-CchHHHHHHHHHHhcCCceeE
Confidence 356667789999999999999999999999999982 2 347888888888888887754
No 52
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=45.11 E-value=75 Score=28.03 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHHHHH-h-CCCCc--eEEEe-cCcccccchHHHHHHHHHHHhhCCCceeeeEe-----HH---HHHHH
Q 017413 182 TRQASLRVAEYAFHYAK-T-HGRER--VSAIH-KANIMQKTDGLFLKCCREVAEKYPEITYEEVV-----ID---NCCMM 248 (372)
Q Consensus 182 Tr~~~eRiar~AFe~A~-~-r~rk~--Vt~v~-KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~-----vD---a~~~~ 248 (372)
...+.+..+++..+..- . +|.++ +.++. ..+.. +.....+-+.+..+++|++++...+ .+ .++.+
T Consensus 107 ~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~--~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 184 (290)
T 2fn9_A 107 NYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQ--PTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQ 184 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCH--HHHHHHHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCc--hHHHHHHHHHHHHHhCCCCEEEEeccCCCCHHHHHHHHHH
Confidence 34555555565555422 1 14567 55554 22221 2334556677777778888764322 12 23456
Q ss_pred HHhCCCCccEEEcCC
Q 017413 249 LVKNPAAFDVLVMPN 263 (372)
Q Consensus 249 Lv~~P~~fdViv~~N 263 (372)
+++....+|.|+|.|
T Consensus 185 ll~~~~~~~ai~~~~ 199 (290)
T 2fn9_A 185 ILQAHPEIKAIWCGN 199 (290)
T ss_dssp HHHHCTTCCEEEESS
T ss_pred HHHhCCCCcEEEECC
Confidence 676655799999988
No 53
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=45.11 E-value=47 Score=29.24 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=48.8
Q ss_pred cCCCCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHh-----cCeEEECccc
Q 017413 36 SSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR-----NKVGLKGPMA 110 (372)
Q Consensus 36 ~~~~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~-----~da~L~g~~~ 110 (372)
|-|..+.+|++|-|---=-++++.+.++|+.+|+++|....- .. ..|++..+-+++ +++++-++-+
T Consensus 7 ~~~~m~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~S---aH------R~p~~~~~~~~~a~~~g~~ViIa~AG~ 77 (174)
T 3kuu_A 7 SAYAAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVS---AH------RTPDRLFSFAEQAEANGLHVIIAGNGG 77 (174)
T ss_dssp CSSCCCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECC---TT------TCHHHHHHHHHHTTTTTCSEEEEEEES
T ss_pred ccccCCCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEc---cc------CCHHHHHHHHHHHHhCCCcEEEEECCh
Confidence 346667789999998887899999999999999886542222 11 267777777653 6888887754
Q ss_pred C
Q 017413 111 T 111 (372)
Q Consensus 111 ~ 111 (372)
.
T Consensus 78 a 78 (174)
T 3kuu_A 78 A 78 (174)
T ss_dssp S
T ss_pred h
Confidence 4
No 54
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=44.66 E-value=71 Score=29.09 Aligned_cols=72 Identities=11% Similarity=-0.013 Sum_probs=42.3
Q ss_pred HHHHHHHHh--CCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeH-----H---HHHHHHHhC-CCCccEE
Q 017413 191 EYAFHYAKT--HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI-----D---NCCMMLVKN-PAAFDVL 259 (372)
Q Consensus 191 r~AFe~A~~--r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~v-----D---a~~~~Lv~~-P~~fdVi 259 (372)
+.|.++..+ +|.+++-++.-..-.. +.....+-+.+..+++|++++...+. + .++.++++. ...+|.|
T Consensus 123 ~~a~~~L~~~~~G~~~I~~i~g~~~~~-~~~~R~~Gf~~al~~~pgi~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~aI 201 (332)
T 2rjo_A 123 EETATQLFKSMGGKGGVVALGGIFSNV-PAIERKAGLDAALKKFPGIQLLDFQVADWNSQKAFPIMQAWMTRFNSKIKGV 201 (332)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECCTTCH-HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHHGGGEEEE
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCc-cHHHHHHHHHHHHHhCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCCCeeEE
Confidence 344444444 5777887775321111 23345566777777788887654321 1 234566665 5678999
Q ss_pred EcCC
Q 017413 260 VMPN 263 (372)
Q Consensus 260 v~~N 263 (372)
+|.|
T Consensus 202 ~~~n 205 (332)
T 2rjo_A 202 WAAN 205 (332)
T ss_dssp EESS
T ss_pred EECC
Confidence 9988
No 55
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=42.96 E-value=63 Score=28.51 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHH--HHh-CCCCceEEEe-cCcccccchHHHHHHHHHHHhhCCCceeeeEeH-----H---HHHHHH
Q 017413 182 TRQASLRVAEYAFHY--AKT-HGRERVSAIH-KANIMQKTDGLFLKCCREVAEKYPEITYEEVVI-----D---NCCMML 249 (372)
Q Consensus 182 Tr~~~eRiar~AFe~--A~~-r~rk~Vt~v~-KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~v-----D---a~~~~L 249 (372)
........+++..+. -.+ +..+++-++. ..+. .+.....+-+.+..+++|++++..... + .++.++
T Consensus 112 ~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~--~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 189 (293)
T 3l6u_A 112 NQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANV--YTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQV 189 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTC--HHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCC--chHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHHHHHHH
Confidence 445555566665552 222 1112676665 2222 133456677777778889988765322 1 235577
Q ss_pred HhCCCCccEEEcCC
Q 017413 250 VKNPAAFDVLVMPN 263 (372)
Q Consensus 250 v~~P~~fdViv~~N 263 (372)
++....+|.|+|.|
T Consensus 190 l~~~~~~~ai~~~~ 203 (293)
T 3l6u_A 190 IDSGIPFDAVYCHN 203 (293)
T ss_dssp HHTTCCCSEEEESS
T ss_pred HHhCCCCCEEEECC
Confidence 77777899999988
No 56
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=42.46 E-value=36 Score=27.92 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEec
Q 017413 183 RQASLRVAEYAFHYAKTHGRERVSAIHK 210 (372)
Q Consensus 183 r~~~eRiar~AFe~A~~r~rk~Vt~v~K 210 (372)
.+.+++.+++|+++|+..+ .+|+++|=
T Consensus 35 s~~s~~al~~A~~la~~~~-a~l~llhV 61 (155)
T 3dlo_A 35 SDRAERVLRFAAEEARLRG-VPVYVVHS 61 (155)
T ss_dssp SHHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcC-CEEEEEEE
Confidence 4678999999999999875 47888763
No 57
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=42.03 E-value=57 Score=33.22 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHhCCCCccEEEcCCcch
Q 017413 192 YAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYG 266 (372)
Q Consensus 192 ~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfG 266 (372)
.+..+|+. | -.||-+|= +.-..++++.-+++.+.+.+++...|.-...--..+.+||||+|.-++=
T Consensus 80 ~~~~la~~-g-a~V~giD~-------~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e 145 (569)
T 4azs_A 80 FSLSLASK-G-ATIVGIDF-------QQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH 145 (569)
T ss_dssp HHHHHHHT-T-CEEEEEES-------CHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred HHHHHHhC-C-CEEEEECC-------CHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence 34456654 4 47999982 2445777887777777666666666543222223578999999987763
No 58
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=41.60 E-value=1.1e+02 Score=27.15 Aligned_cols=197 Identities=14% Similarity=0.024 Sum_probs=92.7
Q ss_pred ccccCCCCceEEEEEcCCCC---cH-HHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHH--HhcCeEEE
Q 017413 33 RAFSSDITPITATLFPGDGI---GP-EIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLK 106 (372)
Q Consensus 33 ~~~~~~~~~~~I~vi~GDGi---Gp-Ev~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i--~~~da~L~ 106 (372)
|.+.+ +++.+|+++--+-- -. +++..+.+.++..|..+.+ +...... .-..+.++.+ ++.|+++.
T Consensus 6 r~L~~-~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~------~~~~~~~~~l~~~~vdGiIi 76 (301)
T 3miz_A 6 RLIRS-SRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILI--ANTGGSS------EREVEIWKMFQSHRIDGVLY 76 (301)
T ss_dssp -------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEE--EECTTCH------HHHHHHHHHHHHTTCSEEEE
T ss_pred HHHhh-CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEE--EeCCCCh------HHHHHHHHHHHhCCCCEEEE
Confidence 45543 34578888854432 23 8898898888888866655 2221100 0112334444 36788877
Q ss_pred CcccCCCCCCCCcccHHHHHhhcceeeeEeccCCCCCCCcCCCccEEEeecCCCcccccceeeeeCCeEEEeecccHHHH
Q 017413 107 GPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQAS 186 (372)
Q Consensus 107 g~~~~p~~~~~~s~~~~LR~~ldlyanvRP~k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~ 186 (372)
.+...+. . +..+ ...++-+|++-...++.- +. +-+. .-.
T Consensus 77 ~~~~~~~-------------~------~~~~--------~~~~iPvV~~~~~~~~~~-~~-----~~V~----~D~---- 115 (301)
T 3miz_A 77 VTMYRRI-------------V------DPES--------GDVSIPTVMINCRPQTRE-LL-----PSIE----PDD---- 115 (301)
T ss_dssp EEEEEEE-------------C------CCCC--------TTCCCCEEEEEEECSSTT-SS-----CEEE----ECH----
T ss_pred ecCCccH-------------H------HHHH--------HhCCCCEEEECCCCCCCC-CC-----CEEe----eCh----
Confidence 6543210 0 0000 012355555532221110 00 0011 112
Q ss_pred HHHHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhC-CCce---ee----------eEeHHHHHHHHHhC
Q 017413 187 LRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY-PEIT---YE----------EVVIDNCCMMLVKN 252 (372)
Q Consensus 187 eRiar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eY-p~I~---~~----------~~~vDa~~~~Lv~~ 252 (372)
....+.|.++-.++|.+++-++.-..-.. +.....+-+.+..+++ ..+. +. .-++..++.++++.
T Consensus 116 ~~~g~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 194 (301)
T 3miz_A 116 YQGARDLTRYLLERGHRRIGYIRLNPILL-GAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQ 194 (301)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEECCTTSH-HHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecCccch-hHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcC
Confidence 23445566666677888887776322211 2233344444443332 1111 11 11111667778887
Q ss_pred CCCccEEEcCCcchhhHHHHHhhhcCCCCcc
Q 017413 253 PAAFDVLVMPNLYGDIISDLCAGLIGGLGLT 283 (372)
Q Consensus 253 P~~fdViv~~NlfGDIlSDlaa~l~GglGl~ 283 (372)
...+|.|+|.| |.++--+....--.|+-
T Consensus 195 ~~~~~ai~~~~---d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 195 DDRPTAIMSGN---DEMAIQIYIAAMALGLR 222 (301)
T ss_dssp TTCCSEEEESS---HHHHHHHHHHHHTTTCC
T ss_pred CCCCcEEEECC---HHHHHHHHHHHHHcCCC
Confidence 77899999998 55554443334445553
No 59
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=39.72 E-value=24 Score=34.56 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=34.4
Q ss_pred HHhCCCCceEEEecCcccccchHHHHHHHHHHHh--hCCC-ceeeeEeHHHHHHHHHhCCCCccEEEcCCcchhh
Q 017413 197 AKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE--KYPE-ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDI 268 (372)
Q Consensus 197 A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~--eYp~-I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfGDI 268 (372)
|.+.|-++|+.|+++++. +.++++.+ .+.+ |.+-+.-+.. +.-|++|||||++ ++|..
T Consensus 101 Aa~aGA~~V~ave~s~~~--------~~a~~~~~~n~~~~~i~~i~~~~~~-----~~lpe~~DvivsE-~~~~~ 161 (376)
T 4hc4_A 101 CAQAGARRVYAVEASAIW--------QQAREVVRFNGLEDRVHVLPGPVET-----VELPEQVDAIVSE-WMGYG 161 (376)
T ss_dssp HHHTTCSEEEEEECSTTH--------HHHHHHHHHTTCTTTEEEEESCTTT-----CCCSSCEEEEECC-CCBTT
T ss_pred HHHhCCCEEEEEeChHHH--------HHHHHHHHHcCCCceEEEEeeeeee-----ecCCccccEEEee-ccccc
Confidence 445677899999976532 33455444 3333 5554443322 3458999999973 44443
No 60
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=39.03 E-value=1e+02 Score=25.06 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=35.1
Q ss_pred HHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhC---CCceeeeEeHHHHHHHHHhCCCCccEEEcCCcch
Q 017413 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY---PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYG 266 (372)
Q Consensus 193 AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eY---p~I~~~~~~vDa~~~~Lv~~P~~fdViv~~NlfG 266 (372)
+..+++ ++..+|+.++.. .-..+.+++-.+.+ +.+++...-+......+...+..||+|++...|.
T Consensus 59 ~~~~~~-~~~~~v~~vD~~-------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~ 127 (187)
T 2fhp_A 59 AIEAVS-RGMDKSICIEKN-------FAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA 127 (187)
T ss_dssp HHHHHH-TTCSEEEEEESC-------HHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred HHHHHH-cCCCEEEEEECC-------HHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 334444 444689998843 23344555544332 2354443333222233444578899999876665
No 61
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=38.24 E-value=57 Score=28.70 Aligned_cols=64 Identities=9% Similarity=-0.010 Sum_probs=45.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHH-----HhcCeEEECcccC
Q 017413 39 ITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV-----RRNKVGLKGPMAT 111 (372)
Q Consensus 39 ~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i-----~~~da~L~g~~~~ 111 (372)
..+.+|++|-|.--=-++++.+..+|+.+|+++|....-+ . ..|++..+-+ +.+++++-++-+.
T Consensus 5 ~~~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa---H------R~p~~~~~~~~~a~~~g~~ViIa~AG~a 73 (174)
T 3lp6_A 5 GERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSA---H------RTPEAMFSYARGAAARGLEVIIAGAGGA 73 (174)
T ss_dssp -CCCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCT---T------TCHHHHHHHHHHHHHHTCCEEEEEEESS
T ss_pred CCCCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECC---C------CCHHHHHHHHHHHHhCCCCEEEEecCch
Confidence 3456799999988878999999999999998855422221 1 2566666655 4578888877543
No 62
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=37.63 E-value=19 Score=34.94 Aligned_cols=29 Identities=41% Similarity=0.566 Sum_probs=18.6
Q ss_pred ccCCC-CceEEEEEcCC--CCcHHHHHHHHHHHHh
Q 017413 35 FSSDI-TPITATLFPGD--GIGPEIAESVKQVFRT 66 (372)
Q Consensus 35 ~~~~~-~~~~I~vi~GD--GiGpEv~~~~~~vl~a 66 (372)
||+.. ++.+|++-.|| ||||||+ .+.+..
T Consensus 1 Ms~~~~~~~kIaIT~GDPaGIGpEIi---lKa~~~ 32 (349)
T 4aty_A 1 MSRTRDRAMTVALAIGDPNGIGPEIA---VKAAAQ 32 (349)
T ss_dssp ------CCCCEEEECCCTTSSHHHHH---HHHHHC
T ss_pred CCCCCCCCCeEEEECCCcchhHHHHH---HHHHHh
Confidence 44433 45789999997 8999998 444544
No 63
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=36.14 E-value=1.1e+02 Score=27.77 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=39.2
Q ss_pred HHHHHHHh--CCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEe-H----H---HHHHHHHhCCCCccEEEc
Q 017413 192 YAFHYAKT--HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVV-I----D---NCCMMLVKNPAAFDVLVM 261 (372)
Q Consensus 192 ~AFe~A~~--r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~-v----D---a~~~~Lv~~P~~fdViv~ 261 (372)
.|.++..+ .|.+++-++.-..-.. +.....+-+.+..+++|++++.... - + ..+.++++....+|.|+|
T Consensus 116 ~a~~~L~~~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~pg~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~ 194 (325)
T 2x7x_A 116 SVGNYIASSLKGKGNIVELTGLSGST-PAMERHQGFMAAISKFPDIKLIDKADAAWERGPAEIEMDSMLRRHPKIDAVYA 194 (325)
T ss_dssp HHHHHHHHHTTTEEEEEEEESCTTSH-HHHHHHHHHHHHHHTCTEEEEEEEEECTTSHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred HHHHHHHHHcCCCceEEEEECCCCCc-cHHHHHHHHHHHHHhCCCCEEEeeecCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 34444444 3667777665321111 2234456666666778888765322 1 1 234566665556899998
Q ss_pred CC
Q 017413 262 PN 263 (372)
Q Consensus 262 ~N 263 (372)
.|
T Consensus 195 ~n 196 (325)
T 2x7x_A 195 HN 196 (325)
T ss_dssp SS
T ss_pred CC
Confidence 87
No 64
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=35.47 E-value=1.7e+02 Score=25.26 Aligned_cols=72 Identities=13% Similarity=0.017 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeee-------EeHH---HHHHHHHhCCCCccEE
Q 017413 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEE-------VVID---NCCMMLVKNPAAFDVL 259 (372)
Q Consensus 190 ar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~-------~~vD---a~~~~Lv~~P~~fdVi 259 (372)
.+.|.++-.++|.+++-++.-..-.. ......+-+.+..+++ ++.++. ...+ ..+.++++....+|.|
T Consensus 108 ~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 185 (275)
T 3d8u_A 108 GKACTRHLIEQGFKNVGFIGARGNHS-TLQRQLHGWQSAMIEN-YLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNAL 185 (275)
T ss_dssp HHHHHHHHHTTTCCCEEEEECSCSSH-HHHHHHHHHHHHHHHT-TCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHHCCCCeEEEEcCCCCCc-hHHHHHHHHHHHHHHc-CCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEE
Confidence 44455555566777887765321111 1223344455544443 121111 1122 2355677777789999
Q ss_pred EcCC
Q 017413 260 VMPN 263 (372)
Q Consensus 260 v~~N 263 (372)
+|.|
T Consensus 186 ~~~~ 189 (275)
T 3d8u_A 186 VCSH 189 (275)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9987
No 65
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=35.31 E-value=73 Score=25.45 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=38.1
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcc
Q 017413 40 TPITATLFPGDGIGPEIAE-SVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPM 109 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~-~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~ 109 (372)
++.+|.++=+.|+.-.++. ..++..+.-+++++..-...+. .. +.+.++|++|+||-
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~-----~~--------~~~~~~DvvLLgPQ 62 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA-----HY--------DIMGVYDLIILAPQ 62 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS-----CT--------TTGGGCSEEEECGG
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH-----HH--------hhccCCCEEEEChH
Confidence 5678999999999888754 3344444458787775544432 11 22467999999994
No 66
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=32.40 E-value=1.1e+02 Score=27.12 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=36.0
Q ss_pred CCceEEEe-cCcccccchHHHHHHHHHHHhhCCCceeeeEe-----HH---HHHHHHHhCCCCccEEEcCCcchhhHH
Q 017413 202 RERVSAIH-KANIMQKTDGLFLKCCREVAEKYPEITYEEVV-----ID---NCCMMLVKNPAAFDVLVMPNLYGDIIS 270 (372)
Q Consensus 202 rk~Vt~v~-KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~-----vD---a~~~~Lv~~P~~fdViv~~NlfGDIlS 270 (372)
.+++-++. ..+.. +...-.+-+++..+++|++++.... .+ .++.+|++.+..+|.|+|.| |.++
T Consensus 133 ~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n---D~~A 205 (288)
T 1gud_A 133 GGEVAIIEGKAGNA--SGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCAN---DTMA 205 (288)
T ss_dssp CEEEEEEECSTTCH--HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTCCEEEESS---HHHH
T ss_pred CCEEEEEeCCCCCc--hHhHHHHHHHHHHHhCCCcEEEEeecCCccHHHHHHHHHHHHHhCCCceEEEECC---CchH
Confidence 56776664 22221 2223345566666677887654322 12 23456676666799999998 5554
No 67
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=32.33 E-value=1.4e+02 Score=23.54 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=41.7
Q ss_pred cCCCCceEEEEEcCCCCcHHHH--HHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhcCeEEECcc
Q 017413 36 SSDITPITATLFPGDGIGPEIA--ESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPM 109 (372)
Q Consensus 36 ~~~~~~~~I~vi~GDGiGpEv~--~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~da~L~g~~ 109 (372)
.+....++|.++=|.|+|-..+ ...++.++..+++++.....+... +. .+.++|.++.++-
T Consensus 16 ~~~~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~---------~~----~~~~~DlIist~~ 78 (113)
T 1tvm_A 16 YFQGSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI---------ET----YMDGVHLICTTAR 78 (113)
T ss_dssp CCSCSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTT---------TT----STTSCSEEEESSC
T ss_pred hhcccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHH---------hh----ccCCCCEEEECCc
Confidence 3444568999999999998764 567778888888876655544321 11 1347899988773
No 68
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=31.21 E-value=1.2e+02 Score=28.41 Aligned_cols=85 Identities=11% Similarity=0.023 Sum_probs=54.9
Q ss_pred CCceEEEEEcCC----CCcHHHHHHHHHHHHhcCCCeEEEEEEeecccc-cccCCCCcH---HHHHHHHhcCeEEECccc
Q 017413 39 ITPITATLFPGD----GIGPEIAESVKQVFRTAEVPVEWEEHYVGTEID-PRTQSFLTW---ESLESVRRNKVGLKGPMA 110 (372)
Q Consensus 39 ~~~~~I~vi~GD----GiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~-~~~g~~lp~---etl~~i~~~da~L~g~~~ 110 (372)
....+|.+|-|. |....+.+++.+.++..|.+++ .+++..... ....+..++ +.++.++++|+++++.
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eve--iidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aS-- 131 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETR--IFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCS-- 131 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEE--EBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEE--
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEE--EEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEc--
Confidence 445789999775 6788888888888887775544 466654321 111112343 4567889999999875
Q ss_pred CCCCCCCCcccHHHHHhhcc
Q 017413 111 TPIGKGHRSLNLTLRKELNL 130 (372)
Q Consensus 111 ~p~~~~~~s~~~~LR~~ldl 130 (372)
|.. +.+....|..-+|.
T Consensus 132 -P~Y--n~sipg~LKn~IDr 148 (279)
T 2fzv_A 132 -PER--HGQITSVMKAQIDH 148 (279)
T ss_dssp -EEE--TTEECHHHHHHHHH
T ss_pred -Ccc--ccCcCHHHHHHHHH
Confidence 321 12455678888883
No 69
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=31.03 E-value=1.2e+02 Score=26.57 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=36.3
Q ss_pred eEEEEEcCCC---CcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHH--HhcCeEEECcccC
Q 017413 42 ITATLFPGDG---IGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMAT 111 (372)
Q Consensus 42 ~~I~vi~GDG---iGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i--~~~da~L~g~~~~ 111 (372)
++|+++--+- --.+++..+.+.++..|..+.+ +...... .-..+.++.+ ++.|+++..+...
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~------~~~~~~~~~l~~~~vdgiIi~~~~~ 82 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLL--TSTNNNP------DNERRGLENLLSQHIDGLIVEPTKS 82 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEE--EECTTCH------HHHHHHHHHHHHTCCSEEEECCSST
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEE--EeCCCCh------HHHHHHHHHHHHCCCCEEEEecccc
Confidence 7899885443 3457777787888777866655 2221110 0112334443 4688888877654
No 70
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=30.30 E-value=1.3e+02 Score=26.44 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=38.2
Q ss_pred HHHHHHHhC-C-CCceEEEe-cCcccccchHHHHHHHHHHHhhCCCceeeeEe-----HH---HHHHHHHhCCCCccEEE
Q 017413 192 YAFHYAKTH-G-RERVSAIH-KANIMQKTDGLFLKCCREVAEKYPEITYEEVV-----ID---NCCMMLVKNPAAFDVLV 260 (372)
Q Consensus 192 ~AFe~A~~r-~-rk~Vt~v~-KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~-----vD---a~~~~Lv~~P~~fdViv 260 (372)
.|.++-.++ | .+++-++. ..+.. +.....+-+++..++||++++.... .+ ..+.+|++.+..+|.|+
T Consensus 111 ~a~~~L~~~~gg~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~ 188 (283)
T 2ioy_A 111 MAAEFIAKALKGKGNVVELEGIPGAS--AARDRGKGFDEAIAKYPDIKIVAKQAADFDRSKGLSVMENILQAQPKIDAVF 188 (283)
T ss_dssp HHHHHHHHHTTTCEEEEEEECCTTCH--HHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSCCCEEE
T ss_pred HHHHHHHHHcCCCceEEEEECCCCCc--cHHHHHHHHHHHHHhCCCCEEEeeccCCCCHHHHHHHHHHHHHhCCCccEEE
Confidence 344444443 3 56776664 22221 1223345566666778887654321 12 13445666555799999
Q ss_pred cCC
Q 017413 261 MPN 263 (372)
Q Consensus 261 ~~N 263 (372)
|.|
T Consensus 189 ~~n 191 (283)
T 2ioy_A 189 AQN 191 (283)
T ss_dssp ESS
T ss_pred ECC
Confidence 999
No 71
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=29.94 E-value=1.7e+02 Score=22.47 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHH-HhCCCCceEEEecCc
Q 017413 184 QASLRVAEYAFHYA-KTHGRERVSAIHKAN 212 (372)
Q Consensus 184 ~~~eRiar~AFe~A-~~r~rk~Vt~v~KaN 212 (372)
+.+++.+++|.++| ++.+ .+|+++|=..
T Consensus 12 ~~s~~al~~a~~la~~~~~-a~l~ll~v~~ 40 (138)
T 3idf_A 12 EACERAAQYILDMFGKDAD-CTLTLIHVKP 40 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT-EEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCC-CEEEEEEEec
Confidence 56889999999999 7664 5788877443
No 72
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=29.79 E-value=1.3e+02 Score=28.12 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=38.9
Q ss_pred CCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeH---HHHHHHH---HhCCCCccEEEcCC
Q 017413 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI---DNCCMML---VKNPAAFDVLVMPN 263 (372)
Q Consensus 202 rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~v---Da~~~~L---v~~P~~fdViv~~N 263 (372)
+..|++.+-. .+..+.+++++..++||+|+++...+ |....+| +..-..+||+...+
T Consensus 29 ~~~l~~~~~~-----~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 91 (414)
T 3quf_A 29 KTKISFYSYF-----KDNQIGEVVKGFEKKNPDITLDVQYGQDPAQYISTLQTRLAGGKPPTIFNLTM 91 (414)
T ss_dssp CEEEEEEESS-----CHHHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHHHHSSSCCSEEEECT
T ss_pred CEEEEEEecC-----CchHHHHHHHHHHHHCcCeEEEEEeCCChHHHHHHHHHHHhCCCCCCEEEECC
Confidence 3345655422 23588999999999999999998875 4444333 34455899998765
No 73
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=29.12 E-value=2.4e+02 Score=23.42 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=47.9
Q ss_pred EEEeecccHHHHHHHHHHHHHHHHhCCCCceEEEe-cCcccccchHHHHHHHHHHHhhCCCcee
Q 017413 175 VESLKIITRQASLRVAEYAFHYAKTHGRERVSAIH-KANIMQKTDGLFLKCCREVAEKYPEITY 237 (372)
Q Consensus 175 a~~~~~~Tr~~~eRiar~AFe~A~~r~rk~Vt~v~-KaNvl~~tdglf~~~~~eva~eYp~I~~ 237 (372)
-.++.=.|.+++...+...++.|..+|.+.|.++| |.+-.+...+.-++.+.++-++.|.|.-
T Consensus 49 ~LDLHG~~~~EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~ 112 (137)
T 3qd7_X 49 SLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQA 112 (137)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeE
Confidence 46777889999999999999999999888999998 3332111123678888888888887754
No 74
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=29.00 E-value=2.5e+02 Score=25.18 Aligned_cols=63 Identities=10% Similarity=0.190 Sum_probs=35.6
Q ss_pred CCCCceEEEecCcccccchHHHHHHHHHHHh-hCCCceeeeEe-----HHH---HHHHHHhCCCCccEEEcCC
Q 017413 200 HGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPEITYEEVV-----IDN---CCMMLVKNPAAFDVLVMPN 263 (372)
Q Consensus 200 r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp~I~~~~~~-----vDa---~~~~Lv~~P~~fdViv~~N 263 (372)
+|.+++.++.=..-. .....|.+-+.+..+ .||++++.... .+. .+.+|++...++|.|+|.|
T Consensus 126 ~g~~~i~~i~g~~~~-~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~~n 197 (316)
T 1tjy_A 126 KEKAKVAFFYSSPTV-TDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPD 197 (316)
T ss_dssp SSSEEEEEEESCSSC-HHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEEECS
T ss_pred CCCCEEEEEEcCCCC-hhHHHHHHHHHHHHHhhCCCcEEEEeccCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 456677766422111 123566677777654 58888764332 121 2334555434799999998
No 75
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=28.75 E-value=2e+02 Score=25.58 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=37.8
Q ss_pred HHHHHHHhC--CCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEe-----HH---HHHHHHHhCCCCccEEEc
Q 017413 192 YAFHYAKTH--GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVV-----ID---NCCMMLVKNPAAFDVLVM 261 (372)
Q Consensus 192 ~AFe~A~~r--~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~-----vD---a~~~~Lv~~P~~fdViv~ 261 (372)
.+.++..++ |.+++-++.-..-.. +.....+-+++..++ +++++.... .+ ..+.++++....+|.|+|
T Consensus 111 ~a~~~L~~~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 188 (313)
T 2h3h_A 111 TAGLIMKELLGGKGKVVIGTGSLTAM-NSLQRIQGFKDAIKD-SEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFG 188 (313)
T ss_dssp HHHHHHHHHHTSCSEEEEEESCSSCH-HHHHHHHHHHHHHTT-SSCEEEEEEECSSCHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEECCCCCc-cHHHHHHHHHHHhcC-CCCEEEEeecCCCCHHHHHHHHHHHHHHCcCceEEEE
Confidence 344444443 667777775331111 223445556665555 677654322 11 234566665457999999
Q ss_pred CC
Q 017413 262 PN 263 (372)
Q Consensus 262 ~N 263 (372)
.|
T Consensus 189 ~~ 190 (313)
T 2h3h_A 189 VY 190 (313)
T ss_dssp CS
T ss_pred cC
Confidence 88
No 76
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=28.47 E-value=1.6e+02 Score=25.71 Aligned_cols=40 Identities=13% Similarity=-0.017 Sum_probs=22.2
Q ss_pred ccccCCCCceEEEEEcCC-----CCcHHHHHHHHHHHHhcCCCeEE
Q 017413 33 RAFSSDITPITATLFPGD-----GIGPEIAESVKQVFRTAEVPVEW 73 (372)
Q Consensus 33 ~~~~~~~~~~~I~vi~GD-----GiGpEv~~~~~~vl~a~~~~i~~ 73 (372)
|.+.+ +++.+|+++-.+ .-..+++..+.+.++..|..+.+
T Consensus 12 r~L~~-~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 56 (296)
T 3brq_A 12 RNLSA-KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLL 56 (296)
T ss_dssp --------CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhhc-CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEE
Confidence 44443 345789888433 35567888888887777765543
No 77
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=27.82 E-value=2.4e+02 Score=24.65 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCC-Cce---e-----eeEeHHHHHHHHHhCCCCccEE
Q 017413 189 VAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYP-EIT---Y-----EEVVIDNCCMMLVKNPAAFDVL 259 (372)
Q Consensus 189 iar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp-~I~---~-----~~~~vDa~~~~Lv~~P~~fdVi 259 (372)
..+.|.++..++|.+++-++.-..-.. +.....+-+.+..+++. .+. + +..-.-..+.++++....+|.|
T Consensus 112 ~g~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 190 (291)
T 3egc_A 112 GARTAVEYLIARGHTRIGAIVGSAGLM-TSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTAL 190 (291)
T ss_dssp HHHHHHHHHHHTTCCSEEEECSCTTSH-HHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEE
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCc-CHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEE
Confidence 344555666666788887775432111 23444555555555441 111 1 1111224566788777789999
Q ss_pred EcCC
Q 017413 260 VMPN 263 (372)
Q Consensus 260 v~~N 263 (372)
+|.|
T Consensus 191 ~~~~ 194 (291)
T 3egc_A 191 LTSS 194 (291)
T ss_dssp EESS
T ss_pred EECC
Confidence 9988
No 78
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=27.63 E-value=1e+02 Score=26.95 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHh-----cCeEEECcccC
Q 017413 40 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR-----NKVGLKGPMAT 111 (372)
Q Consensus 40 ~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~-----~da~L~g~~~~ 111 (372)
.+..|++|-|---=-++++.+..+|+.+|+++|..- +| .. ..|++..+-.++ +++++-++-+.
T Consensus 10 ~~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V--~S-aH------R~p~~l~~~~~~a~~~g~~ViIa~AG~a 77 (170)
T 1xmp_A 10 MKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKV--VS-AH------RTPDYMFEYAETARERGLKVIIAGAGGA 77 (170)
T ss_dssp -CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEE--CC-TT------TSHHHHHHHHHHTTTTTCCEEEEEEESS
T ss_pred CCCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEE--Ee-cc------CCHHHHHHHHHHHHhCCCcEEEEECCch
Confidence 456799999888888999999999999998854422 22 11 267777777664 67888777544
No 79
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=26.85 E-value=35 Score=33.01 Aligned_cols=16 Identities=56% Similarity=0.883 Sum_probs=13.9
Q ss_pred EEEEEcCC--CCcHHHHH
Q 017413 43 TATLFPGD--GIGPEIAE 58 (372)
Q Consensus 43 ~I~vi~GD--GiGpEv~~ 58 (372)
+|++-.|| ||||||+-
T Consensus 8 ~iaIT~GDpaGIGpEii~ 25 (330)
T 2hi1_A 8 TVAITMGDPAGIGPEIIV 25 (330)
T ss_dssp CEEEECCCTTTTHHHHHH
T ss_pred CEEEcCCCCcchhHHHHH
Confidence 39999998 89999984
No 80
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=26.54 E-value=3e+02 Score=23.91 Aligned_cols=68 Identities=7% Similarity=0.005 Sum_probs=39.4
Q ss_pred CCceEEEEE-cC---CCCcHHHHHHHHHHHHhc-CCCeEEEEEEeecccccccCCCCcHHHHHHH--HhcCeEEECcccC
Q 017413 39 ITPITATLF-PG---DGIGPEIAESVKQVFRTA-EVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMAT 111 (372)
Q Consensus 39 ~~~~~I~vi-~G---DGiGpEv~~~~~~vl~a~-~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i--~~~da~L~g~~~~ 111 (372)
+++++|+++ |. +.--.++...+++.++.. +..+.+..........+ --.+.++.+ ++.|+++..+...
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~-----~~~~~i~~l~~~~vdgiii~~~~~ 80 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYN-----SFVATSQAVIEEQPDGVMFAPTVP 80 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHH-----HHHHHHHHHHTTCCSEEEECCSSG
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHH-----HHHHHHHHHHhcCCCEEEECCCCh
Confidence 456889877 33 335577888888888887 77777655433211100 012334444 4578888877543
No 81
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=25.72 E-value=1.7e+02 Score=27.14 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=38.4
Q ss_pred CCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHH----HHHHHHHhCCCCccEEEcC
Q 017413 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID----NCCMMLVKNPAAFDVLVMP 262 (372)
Q Consensus 202 rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vD----a~~~~Lv~~P~~fdViv~~ 262 (372)
...+++.+-..--......|.+++.+..++||+|+++...+. .-....+..-..+||+...
T Consensus 7 ~~tl~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~kl~~~~~sg~~pDv~~~~ 71 (405)
T 3i3v_A 7 PDTLVVHTQLGTTAPGSPTYLAAVDRFREENPGVKIKNLVNGDDLAQVYETSRLARKEADVVMVN 71 (405)
T ss_dssp CCSEEEEESCSSSSTTHHHHHHHHHHHHHHSTTCCEEEEECSTTHHHHHHHHHHTTCCCSEEEEC
T ss_pred CcEEEEEeecCCCchhhHHHHHHHHHHHHHCCCcEEEEEECcHHHHHHHHHHHHCCCCCcEEEec
Confidence 345776653211111246889999999999999999987662 2122334444568998874
No 82
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=25.68 E-value=2e+02 Score=25.11 Aligned_cols=72 Identities=13% Similarity=-0.077 Sum_probs=37.8
Q ss_pred HHHHHHHHHhC-C-CCceEEEecC-cccccchHHHHHHHHHHHhhCCCceeeeEe----HH---HHHHHHHhCCCCccEE
Q 017413 190 AEYAFHYAKTH-G-RERVSAIHKA-NIMQKTDGLFLKCCREVAEKYPEITYEEVV----ID---NCCMMLVKNPAAFDVL 259 (372)
Q Consensus 190 ar~AFe~A~~r-~-rk~Vt~v~Ka-Nvl~~tdglf~~~~~eva~eYp~I~~~~~~----vD---a~~~~Lv~~P~~fdVi 259 (372)
.+.+.++..++ | .+++-++.-. +.. +.....+-+.+..++++....+... .+ ..+.++++....+|.|
T Consensus 117 g~~~~~~L~~~~G~~~~i~~i~~~~~~~--~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 194 (289)
T 3brs_A 117 GIRIGAVTKNLVRKSGKIGVISFVKNSK--TAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISVM 194 (289)
T ss_dssp HHHHHHHHHHHTSSSCEEEEEESCTTSH--HHHHHHHHHHHHHGGGGGGEEEEEECTTCHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHcCCCceEEEEECCCCCc--cHHHHHHHHHHHHHhCCCcEEeeecCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 34444555454 4 6777777532 211 2234455666666666543111111 12 2345666655579999
Q ss_pred EcCC
Q 017413 260 VMPN 263 (372)
Q Consensus 260 v~~N 263 (372)
+|.|
T Consensus 195 ~~~~ 198 (289)
T 3brs_A 195 VGLN 198 (289)
T ss_dssp EESS
T ss_pred EECC
Confidence 9987
No 83
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=25.65 E-value=1.1e+02 Score=26.67 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHH-----hcCeEEECcccC
Q 017413 39 ITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVR-----RNKVGLKGPMAT 111 (372)
Q Consensus 39 ~~~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~-----~~da~L~g~~~~ 111 (372)
|.+.+|++|-|---=-++++.+.++|+.+|+++|....-+ . ..|++..+-++ .+++++-++-+.
T Consensus 4 m~~~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~Sa---H------R~p~~~~~~~~~a~~~g~~ViIa~AG~a 72 (169)
T 3trh_A 4 MNKIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSA---H------RTPKETVEFVENADNRGCAVFIAAAGLA 72 (169)
T ss_dssp --CCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCT---T------TSHHHHHHHHHHHHHTTEEEEEEEECSS
T ss_pred CCCCcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcc---c------CCHHHHHHHHHHHHhCCCcEEEEECChh
Confidence 4456899999987778899999999999998865422221 1 25777776654 367777777543
No 84
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=25.50 E-value=1.6e+02 Score=25.95 Aligned_cols=32 Identities=13% Similarity=-0.056 Sum_probs=20.1
Q ss_pred CceEEEEEcCC---CCcHHHHHHHHHHHHhcCCCe
Q 017413 40 TPITATLFPGD---GIGPEIAESVKQVFRTAEVPV 71 (372)
Q Consensus 40 ~~~~I~vi~GD---GiGpEv~~~~~~vl~a~~~~i 71 (372)
++++|+++.-+ .-..++...+++.++..|..+
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~ 37 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNA 37 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEE
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEE
Confidence 45789998533 244567777777777777443
No 85
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=25.40 E-value=2e+02 Score=26.05 Aligned_cols=76 Identities=17% Similarity=0.120 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceee-------eEeHH---HHHHHHHhCCCCccEE
Q 017413 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYE-------EVVID---NCCMMLVKNPAAFDVL 259 (372)
Q Consensus 190 ar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~-------~~~vD---a~~~~Lv~~P~~fdVi 259 (372)
.+.|.++-.++|.+++-++.-..-.. +.....+-+.+..+++ ++.++ ....+ .++.+|++....+|.|
T Consensus 169 ~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai 246 (338)
T 3dbi_A 169 SFNAVAELINAGHQEIAFLTGSMDSP-TSIERLAGYKDALAQH-GIALNEKLIANGKWTPASGAEGVEMLLERGAKFSAL 246 (338)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCTTCH-HHHHHHHHHHHHHHHT-TCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCCCc-cHHHHHHHHHHHHHHC-CCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 44556666667888888775321111 2234445555554444 22111 11112 3456778777789999
Q ss_pred EcCCcchhhHH
Q 017413 260 VMPNLYGDIIS 270 (372)
Q Consensus 260 v~~NlfGDIlS 270 (372)
+|.| |.++
T Consensus 247 ~~~n---d~~A 254 (338)
T 3dbi_A 247 VASN---DDMA 254 (338)
T ss_dssp EESS---HHHH
T ss_pred EECC---hHHH
Confidence 9988 5544
No 86
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.32 E-value=3.3e+02 Score=23.61 Aligned_cols=73 Identities=8% Similarity=0.032 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhC-CCce---e-e-eEeHH---HHHHHHHhCCCCccEEE
Q 017413 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY-PEIT---Y-E-EVVID---NCCMMLVKNPAAFDVLV 260 (372)
Q Consensus 190 ar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eY-p~I~---~-~-~~~vD---a~~~~Lv~~P~~fdViv 260 (372)
.+.|.++..++|.+++-++.-..-.. +.....+-+.+..+++ ..+. + . ....+ ..+.++++.+..+|.|+
T Consensus 119 g~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 197 (292)
T 3k4h_A 119 AREVAEYLISLGHKQIAFIGGGSDLL-VTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM 197 (292)
T ss_dssp HHHHHHHHHHTTCCCEEEEESCTTBH-HHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE
T ss_pred HHHHHHHHHHCCCceEEEEeCcccch-hHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE
Confidence 44555555666778887776332221 2223344455544443 1111 1 1 11111 23567777777899999
Q ss_pred cCC
Q 017413 261 MPN 263 (372)
Q Consensus 261 ~~N 263 (372)
|.|
T Consensus 198 ~~~ 200 (292)
T 3k4h_A 198 ATD 200 (292)
T ss_dssp ESS
T ss_pred EcC
Confidence 988
No 87
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=25.27 E-value=84 Score=29.51 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=41.1
Q ss_pred CCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHH--HHHHHH---HhCCC-CccEEEcC
Q 017413 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID--NCCMML---VKNPA-AFDVLVMP 262 (372)
Q Consensus 202 rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vD--a~~~~L---v~~P~-~fdViv~~ 262 (372)
..+|++-+-.+ ......|.+++++..++||+|+++...++ ....+| +.... .+||+.+.
T Consensus 27 ~~~l~~w~~~~--~~~~~~~~~~~~~f~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~~pDv~~~~ 91 (412)
T 3k01_A 27 SGTVTFWDTSN--EAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRTE 91 (412)
T ss_dssp CEEEEEEECCC--TTTHHHHHHHHHTHHHHCTTEEEEEEECCHHHHHHHHHHHHHTTSSCCSEEEEE
T ss_pred CcEEEEecCCC--CcchHHHHHHHHHHHHHCcCeEEEEEecChHHHHHHHHHHHhcCCCCCCEEEec
Confidence 34688877655 22356889999999999999999988763 333333 34455 69998864
No 88
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=25.26 E-value=1.3e+02 Score=27.21 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCceeeeEeH--HHHHHHHHhCCCCccEEEcCCc
Q 017413 219 GLFLKCCREVAEKYPEITYEEVVI--DNCCMMLVKNPAAFDVLVMPNL 264 (372)
Q Consensus 219 glf~~~~~eva~eYp~I~~~~~~v--Da~~~~Lv~~P~~fdViv~~Nl 264 (372)
..+.++..+..++||+|+++...- ..+..+|...-..+||+++.+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (296)
T 3cfx_A 17 VPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADY 64 (296)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEECCHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCchHHHHHHHHhCCCCCcEEEECCh
Confidence 467788888888899999887654 3455666652346999988764
No 89
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=25.21 E-value=75 Score=27.93 Aligned_cols=74 Identities=12% Similarity=0.003 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCCceEEEecCcc-cccchHHHHHHHHHHHhhCCCceeeeE--eHH---HHHHHHHhCCCCccEEEcC
Q 017413 189 VAEYAFHYAKTHGRERVSAIHKANI-MQKTDGLFLKCCREVAEKYPEITYEEV--VID---NCCMMLVKNPAAFDVLVMP 262 (372)
Q Consensus 189 iar~AFe~A~~r~rk~Vt~v~KaNv-l~~tdglf~~~~~eva~eYp~I~~~~~--~vD---a~~~~Lv~~P~~fdViv~~ 262 (372)
..+.|.++-.++|.+++-++.-..- .. +.....+-+++..+++|.+.+... .-+ ..+.++++....+|.|+|.
T Consensus 110 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 188 (276)
T 3jy6_A 110 AAKAATTAFRQQGYQHVVVLTSELELSR-TRQERYRGILAAAQDVDVLEVSESSYNHSEVHQRLTQLITQNDQKTVAFAL 188 (276)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEECSTTCH-HHHHHHHHHHTTCSEEEEEEECSSSCCHHHHHHHHHHHHHSSSSCEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEEEecCCCCCc-hHHHHHHHHHHHHHhCCcEEEeccccCCcHHHHHHHHHHhcCCCCcEEEEe
Confidence 4455666666778888877754332 21 234555666666666665333311 111 1234455777789999998
Q ss_pred C
Q 017413 263 N 263 (372)
Q Consensus 263 N 263 (372)
|
T Consensus 189 ~ 189 (276)
T 3jy6_A 189 K 189 (276)
T ss_dssp S
T ss_pred C
Confidence 8
No 90
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=24.84 E-value=3.6e+02 Score=23.80 Aligned_cols=63 Identities=8% Similarity=-0.103 Sum_probs=36.7
Q ss_pred ceEEEEEcC---CCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHH--HhcCeEEECcccC
Q 017413 41 PITATLFPG---DGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMAT 111 (372)
Q Consensus 41 ~~~I~vi~G---DGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i--~~~da~L~g~~~~ 111 (372)
+++|+++-- +.--.++...+.+.++..|..+.+. ...... .-..+.++.+ ++.|+++..+...
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~------~~~~~~i~~l~~~~vdgiIi~~~~~ 69 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQ--SANGNE------ETQMSQIENMINRGVDVLVIIPYNG 69 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEE--ECTTCH------HHHHHHHHHHHHTTCSEEEEECSST
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE--CCCCCH------HHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 467887733 4466788888888888888666652 221100 0112334444 4688888877543
No 91
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=24.82 E-value=1.3e+02 Score=26.56 Aligned_cols=62 Identities=15% Similarity=0.044 Sum_probs=45.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHh-----cCeEEECcccC
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR-----NKVGLKGPMAT 111 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~-----~da~L~g~~~~ 111 (372)
+.+|++|-|---=-++++.+..+|+.+|++++..- +| .. ..|++..+-.++ +++++-++-+.
T Consensus 21 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V--~S-aH------R~p~~l~~~~~~a~~~g~~ViIa~AG~a 87 (182)
T 1u11_A 21 APVVGIIMGSQSDWETMRHADALLTELEIPHETLI--VS-AH------RTPDRLADYARTAAERGLNVIIAGAGGA 87 (182)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEE--CC-TT------TCHHHHHHHHHHTTTTTCCEEEEEEESS
T ss_pred CCEEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEE--Ec-cc------CCHHHHHHHHHHHHhCCCcEEEEecCch
Confidence 45799999988888999999999999998854422 22 11 267777777764 67888877544
No 92
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=24.68 E-value=90 Score=28.80 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=37.0
Q ss_pred CceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHH--HHHHHHhC----CCCccEEEcCC
Q 017413 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN--CCMMLVKN----PAAFDVLVMPN 263 (372)
Q Consensus 203 k~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa--~~~~Lv~~----P~~fdViv~~N 263 (372)
..|++.+=. ....|.+++++..++||+|+++....+. ...+|... -..+||+...+
T Consensus 34 ~~L~v~~~~-----~~~~~~~~~~~Fe~~~Pgi~V~~~~~~~~~~~~kl~~~~~ag~~~~DV~~~~~ 95 (355)
T 3c9h_A 34 QTLVVYSSL-----DEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSSA 95 (355)
T ss_dssp CEEEEEECS-----CHHHHHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHHHHTTCCBCSEEEESC
T ss_pred CEEEEEeCC-----CHHHHHHHHHHHHHHCcCeEEEEEeCChHHHHHHHHHHHhcCCCCCCEEEecc
Confidence 356665421 2346788888888899999998877633 44455432 24689987765
No 93
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=24.34 E-value=3.5e+02 Score=23.41 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeE----eHH---HHHHHHHhC-CCCccEEEc
Q 017413 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV----VID---NCCMMLVKN-PAAFDVLVM 261 (372)
Q Consensus 190 ar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~----~vD---a~~~~Lv~~-P~~fdViv~ 261 (372)
.+.|.++..++|.+++-++.-..-.. +.....+-+.+..+++ ++.++.. ..+ .++.++++. ...+|.|+|
T Consensus 106 ~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~ 183 (277)
T 3cs3_A 106 ATQAIEQFVNVGSKKVLLLSGPEKGY-DSQERLAVSTRELTRF-GIPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDVFA 183 (277)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCTTSH-HHHHHHHHHHHHHHHT-TCCEEEEECCSSHHHHHHHHHHHTTSCCCSSEEEEE
T ss_pred HHHHHHHHHHcCCceEEEEeCCccCc-cHHHHHHHHHHHHHHc-CCCeeEEeCCCChhHHHHHHHHHHhcCCCCCcEEEE
Confidence 33455555556777887765321111 1223344455544444 2333211 112 234567777 678999999
Q ss_pred CCcchhhHHHHHhhhcCCCCc
Q 017413 262 PNLYGDIISDLCAGLIGGLGL 282 (372)
Q Consensus 262 ~NlfGDIlSDlaa~l~GglGl 282 (372)
.| |.++--+....-..|+
T Consensus 184 ~~---d~~a~g~~~al~~~g~ 201 (277)
T 3cs3_A 184 FN---DEMAIGVYKYVAETNY 201 (277)
T ss_dssp SS---HHHHHHHHHHHTTSSC
T ss_pred cC---hHHHHHHHHHHHHcCC
Confidence 87 5444333333334454
No 94
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=24.30 E-value=2.5e+02 Score=24.54 Aligned_cols=35 Identities=0% Similarity=-0.007 Sum_probs=22.2
Q ss_pred CCceEEEEEcCC---CCcHHHHHHHHHHHHhcCCCeEE
Q 017413 39 ITPITATLFPGD---GIGPEIAESVKQVFRTAEVPVEW 73 (372)
Q Consensus 39 ~~~~~I~vi~GD---GiGpEv~~~~~~vl~a~~~~i~~ 73 (372)
++..+|+++--+ .-..+++..+.+.++..|..+.+
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 43 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILL 43 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEE
Confidence 345788888433 23456777777777777766554
No 95
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=23.95 E-value=28 Score=27.46 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEecCc
Q 017413 186 SLRVAEYAFHYAKTHGRERVSAIHKAN 212 (372)
Q Consensus 186 ~eRiar~AFe~A~~r~rk~Vt~v~KaN 212 (372)
+++.+++|.++|++.+ .+++++|=..
T Consensus 16 s~~al~~a~~la~~~~-a~l~ll~v~~ 41 (143)
T 3fdx_A 16 TERIISHVESEARIDD-AEVHFLTVIP 41 (143)
T ss_dssp CTTHHHHHHHHHHHHT-CEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhcC-CeEEEEEEec
Confidence 5778899999998874 5788887443
No 96
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=23.79 E-value=1.5e+02 Score=25.77 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=44.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHh-----cCeEEECcccC
Q 017413 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR-----NKVGLKGPMAT 111 (372)
Q Consensus 42 ~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~-----~da~L~g~~~~ 111 (372)
.+|++|-|.--=-++++.+..+|+.+|+++|... +| .. ..|++..+-+++ +++++-++-+.
T Consensus 6 p~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V--~S-aH------Rtp~~l~~~~~~~~~~g~~ViIa~AG~a 71 (166)
T 3oow_A 6 VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEV--VS-AH------RTPDKMFDYAETAKERGLKVIIAGAGGA 71 (166)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEE--CC-TT------TCHHHHHHHHHHTTTTTCCEEEEEECSS
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEE--Ec-Cc------CCHHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 5799999988888999999999999998644422 22 11 257777777654 58888777543
No 97
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=23.70 E-value=1.3e+02 Score=26.51 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=45.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHhc-----CeEEECcccC
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRN-----KVGLKGPMAT 111 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~~-----da~L~g~~~~ 111 (372)
+..|++|-|---=-++|+.+.++|+.+++++|....-+ . ..|++..+-++++ ++++-|+-+.
T Consensus 22 kp~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~V~SA---H------Rtp~~l~~~~~~a~~~g~~ViIa~AG~a 88 (181)
T 4b4k_A 22 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSA---H------RTPDYMFEYAETARERGLKVIIAGAGGA 88 (181)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCT---T------TSHHHHHHHHHHTTTTTCCEEEEEECSS
T ss_pred CccEEEEECCHhHHHHHHHHHHHHHHcCCCeeEEEEcc---c------cChHHHHHHHHHHHhcCceEEEEecccc
Confidence 34599999988778899999999999998865532222 1 2577777776653 6888887554
No 98
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=23.12 E-value=47 Score=32.13 Aligned_cols=19 Identities=32% Similarity=0.723 Sum_probs=15.9
Q ss_pred CceEEEEEcCC--CCcHHHHH
Q 017413 40 TPITATLFPGD--GIGPEIAE 58 (372)
Q Consensus 40 ~~~~I~vi~GD--GiGpEv~~ 58 (372)
++.+|++-.|| ||||||+-
T Consensus 7 ~~~~iaiT~GDpaGIGpEiil 27 (334)
T 3lxy_A 7 HNNRLVITPGEPAGVGPDLAI 27 (334)
T ss_dssp CCSEEEEECCCTTSSHHHHHH
T ss_pred CCCEEEEeCCCCccchHHHHH
Confidence 45789999998 79999873
No 99
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=23.06 E-value=1.3e+02 Score=27.04 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhCCCceeeeEeH--HHHHHHHHhCCCCccEEEcCCc
Q 017413 219 GLFLKCCREVAEKYPEITYEEVVI--DNCCMMLVKNPAAFDVLVMPNL 264 (372)
Q Consensus 219 glf~~~~~eva~eYp~I~~~~~~v--Da~~~~Lv~~P~~fdViv~~Nl 264 (372)
..+.++..+..++||+|+++...- ..+..+|...-..+||++..+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (295)
T 3cij_A 17 EPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADY 64 (295)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCcHHHHHHHHHhCCCCCCEEEEcCh
Confidence 467788888888899998887654 3445566552335999988764
No 100
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=22.72 E-value=2.1e+02 Score=25.06 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeE-------eH---HHHHHHHHhCCCCccE
Q 017413 189 VAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV-------VI---DNCCMMLVKNPAAFDV 258 (372)
Q Consensus 189 iar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~-------~v---Da~~~~Lv~~P~~fdV 258 (372)
..+.|.++-.++|.+++-++.-..-.. +.....+-+.+..+++ ++.++.. .. -..+.++++....+|.
T Consensus 114 ~g~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 191 (288)
T 3gv0_A 114 YAYEAVERLAQCGRKRIAVIVPPSRFS-FHDHARKGFNRGIRDF-GLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDG 191 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCTTSH-HHHHHHHHHHHHHHHT-TCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSE
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCcccc-hHHHHHHHHHHHHHHc-CCCcchhheeccccchHHHHHHHHHHHhCCCCCcE
Confidence 345566666667888887774322111 1233345555544443 2222211 11 1456678887778999
Q ss_pred EEcCCcchhhHHHHHhhhcCCCCc
Q 017413 259 LVMPNLYGDIISDLCAGLIGGLGL 282 (372)
Q Consensus 259 iv~~NlfGDIlSDlaa~l~GglGl 282 (372)
|+|.| |.++--+....-..|+
T Consensus 192 i~~~~---d~~A~g~~~al~~~g~ 212 (288)
T 3gv0_A 192 IVSIS---GSSTIALVAGFEAAGV 212 (288)
T ss_dssp EEESC---HHHHHHHHHHHHTTTC
T ss_pred EEEcC---cHHHHHHHHHHHHcCC
Confidence 99998 5444333333334444
No 101
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=22.43 E-value=2.6e+02 Score=24.52 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhC-CCceee----eEeHH---HHHHHHHhCCCCccEEEc
Q 017413 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY-PEITYE----EVVID---NCCMMLVKNPAAFDVLVM 261 (372)
Q Consensus 190 ar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eY-p~I~~~----~~~vD---a~~~~Lv~~P~~fdViv~ 261 (372)
.+.|.++-.++|.+++-++.-..-. +.....+-+.+..+++ ..+... ....+ .++.++++....+|.|+|
T Consensus 114 ~~~a~~~L~~~G~~~I~~i~~~~~~--~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 191 (289)
T 3k9c_A 114 ITLAVDHLTELGHRNIAHIDGADAP--GGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMPTPPTAVVA 191 (289)
T ss_dssp HHHHHHHHHHTTCCSEEEECCTTST--THHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEEE
T ss_pred HHHHHHHHHHCCCCcEEEEeCCCCc--cHHHHHHHHHHHHHHCCCCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4455566666788888777543322 3344555566555544 121111 11112 245677787778999999
Q ss_pred CCcchhhHHH
Q 017413 262 PNLYGDIISD 271 (372)
Q Consensus 262 ~NlfGDIlSD 271 (372)
.| |.++-
T Consensus 192 ~~---d~~A~ 198 (289)
T 3k9c_A 192 FN---DRCAT 198 (289)
T ss_dssp SS---HHHHH
T ss_pred CC---hHHHH
Confidence 98 55543
No 102
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=22.18 E-value=26 Score=30.77 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=20.2
Q ss_pred CCCceeEeccCCCCcccccCCCCCCh
Q 017413 289 GEGGIALAEAVHGSAPDIAGKNLANP 314 (372)
Q Consensus 289 g~~~a~FEp~HGsApd~iaGk~iANP 314 (372)
++...+|-|.|||-.| +.|+-+..|
T Consensus 141 ~~~~~~~CPcHGs~FD-~~G~v~~gP 165 (185)
T 3cx5_E 141 GDFGGWFCPCHGSHYD-ISGRIRKGP 165 (185)
T ss_dssp TTTTEEEETTTTEEEC-TTCCEEESS
T ss_pred CCCCEEEcCCCCCEEC-CCCCEecCC
Confidence 3446799999999999 999876655
No 103
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=21.97 E-value=3e+02 Score=25.15 Aligned_cols=75 Identities=7% Similarity=0.013 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhC-CC----ceee--eEeHH---HHHHHHHhCCCCccE
Q 017413 189 VAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY-PE----ITYE--EVVID---NCCMMLVKNPAAFDV 258 (372)
Q Consensus 189 iar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eY-p~----I~~~--~~~vD---a~~~~Lv~~P~~fdV 258 (372)
.++.|.++-.++|.+++-++.-..-.........+-+.+..+++ .. +.+. ....+ .++.++++.+..+|.
T Consensus 174 ~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~a 253 (355)
T 3e3m_A 174 AAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDC 253 (355)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcE
Confidence 34455666666787887776532211111233444455544443 11 1111 11122 345567777678999
Q ss_pred EEcCC
Q 017413 259 LVMPN 263 (372)
Q Consensus 259 iv~~N 263 (372)
|+|.|
T Consensus 254 i~~~n 258 (355)
T 3e3m_A 254 IFCVS 258 (355)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99988
No 104
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=21.95 E-value=4e+02 Score=23.31 Aligned_cols=72 Identities=8% Similarity=-0.044 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCC--CCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeH----H---HHHHHHHhCCCCccEEE
Q 017413 190 AEYAFHYAKTHG--RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI----D---NCCMMLVKNPAAFDVLV 260 (372)
Q Consensus 190 ar~AFe~A~~r~--rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~v----D---a~~~~Lv~~P~~fdViv 260 (372)
.+.|.++..++| .+++.++.-..-. .+.....+-+++..+++ ++++..... + ..+..+++...++|.|+
T Consensus 116 g~~a~~~l~~~g~~~~~i~~i~g~~~~-~~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 193 (297)
T 3rot_A 116 GKKLGEKALELTPSAKRALVLNPQPGH-IGLEKRAYGIKTILQDK-GIFFEELDVGTDPNQVQSRVKSYFKIHPETNIIF 193 (297)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEESCTTC-HHHHHHHHHHHHHHHHT-TCEEEEEECCSCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCCCc-HHHHHHHHHHHHHHHhc-CCeEEEeecCCChHHHHHHHHHHHHhCCCCCEEE
Confidence 344455554555 6677776422211 12334556666666665 665544321 1 23445555555789999
Q ss_pred cCC
Q 017413 261 MPN 263 (372)
Q Consensus 261 ~~N 263 (372)
|.|
T Consensus 194 ~~~ 196 (297)
T 3rot_A 194 CLT 196 (297)
T ss_dssp ESS
T ss_pred EcC
Confidence 988
No 105
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=21.90 E-value=1.6e+02 Score=26.43 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhCCCceeeeEeHH--HHHHHHHhCCCCccEEEcCCc
Q 017413 219 GLFLKCCREVAEKYPEITYEEVVID--NCCMMLVKNPAAFDVLVMPNL 264 (372)
Q Consensus 219 glf~~~~~eva~eYp~I~~~~~~vD--a~~~~Lv~~P~~fdViv~~Nl 264 (372)
..+.++..+..++||+|+++...-. .+..++...-..+||+++.+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (292)
T 3cfz_A 17 VPFEEYEKMFEKEHPNVDVEREPAGSVACVRKIIDLGKKADILASADY 64 (292)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHhcCCCCcEEEECCh
Confidence 4677888888788999988876543 455566652346999988764
No 106
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=21.86 E-value=1.7e+02 Score=25.43 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=44.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHH-----hcCeEEECcccC
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVR-----RNKVGLKGPMAT 111 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~-----~~da~L~g~~~~ 111 (372)
+.+|++|-|.--=-++++.+..+|+.+|+++|... +| .. ..|++..+-++ .+++++-++-+.
T Consensus 3 ~~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V--~S-aH------R~p~~~~~~~~~a~~~g~~ViIa~AG~a 69 (163)
T 3ors_A 3 AMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQV--VS-AH------RTPKMMVQFASEARERGINIIIAGAGGA 69 (163)
T ss_dssp CCCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEE--CC-TT------TSHHHHHHHHHHTTTTTCCEEEEEEESS
T ss_pred CCeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEE--EC-Cc------CCHHHHHHHHHHHHhCCCcEEEEECCch
Confidence 35689998887778899999999999998855422 22 11 26777777665 368888877544
No 107
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=21.74 E-value=3.4e+02 Score=23.45 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhC-CCce---ee--eEeHH---HHHHHHHhCCCCccEEE
Q 017413 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY-PEIT---YE--EVVID---NCCMMLVKNPAAFDVLV 260 (372)
Q Consensus 190 ar~AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eY-p~I~---~~--~~~vD---a~~~~Lv~~P~~fdViv 260 (372)
.+.+.++..++|.+++-++.-..-.. +.....+-+.+..+++ .++. +. ..-.+ ..+.++++.+..+|.|+
T Consensus 114 ~~~~~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 192 (289)
T 1dbq_A 114 GYMAGRYLIERGHREIGVIPGPLERN-TGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVF 192 (289)
T ss_dssp HHHHHHHHHHTTCCSEEEECCC-------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEE
T ss_pred HHHHHHHHHHCCCCeEEEEecCCccc-cHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEE
Confidence 34455555556777887774221111 1223344444444443 1211 10 01111 34557777777899999
Q ss_pred cCC
Q 017413 261 MPN 263 (372)
Q Consensus 261 ~~N 263 (372)
|.|
T Consensus 193 ~~~ 195 (289)
T 1dbq_A 193 CGG 195 (289)
T ss_dssp ESC
T ss_pred ECC
Confidence 988
No 108
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=21.74 E-value=1.7e+02 Score=25.65 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=44.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHHh-----cCeEEECcccC
Q 017413 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR-----NKVGLKGPMAT 111 (372)
Q Consensus 41 ~~~I~vi~GDGiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~~-----~da~L~g~~~~ 111 (372)
+.+|++|-|---=-++++.+..+|+.+|+++|..- +| .. ..|++..+-+++ .++++-++-+.
T Consensus 12 ~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V--~s-aH------R~p~~l~~~~~~a~~~g~~ViIa~AG~a 78 (173)
T 4grd_A 12 APLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKV--VS-AH------RMPDEMFDYAEKARERGLRAIIAGAGGA 78 (173)
T ss_dssp SCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEE--CC-TT------TSHHHHHHHHHHHTTTTCSEEEEEEESS
T ss_pred CCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEE--Ec-cc------cCHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 46799999988778899999999999998854322 22 11 257777766654 47787777544
No 109
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=21.71 E-value=2.1e+02 Score=25.17 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=40.7
Q ss_pred HHHHHHHHHhC--CCCceEEEecCcccccchHHHHHHHHHHHh-hCCCceeeeEe-----HH---HHHHHHHhCCCCccE
Q 017413 190 AEYAFHYAKTH--GRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPEITYEEVV-----ID---NCCMMLVKNPAAFDV 258 (372)
Q Consensus 190 ar~AFe~A~~r--~rk~Vt~v~KaNvl~~tdglf~~~~~eva~-eYp~I~~~~~~-----vD---a~~~~Lv~~P~~fdV 258 (372)
.+.+.++..++ |.+++-++.-... .+.....+-+++..+ .+++++..... .+ ..+.++++....+|.
T Consensus 113 g~~~~~~l~~~~~g~~~i~~i~~~~~--~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 190 (305)
T 3g1w_A 113 GMNAAYKMAELLDGEGEVAVITLPNQ--LNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAG 190 (305)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECTTC--HHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCc--ccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceE
Confidence 34445555555 6778877764332 233444555665444 46776654331 11 234556665567999
Q ss_pred EEcCC
Q 017413 259 LVMPN 263 (372)
Q Consensus 259 iv~~N 263 (372)
|+|.|
T Consensus 191 i~~~~ 195 (305)
T 3g1w_A 191 IFATE 195 (305)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99988
No 110
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=21.32 E-value=2.8e+02 Score=21.86 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=31.4
Q ss_pred HHHHHHhCCCCceEEEecCcccccchHHHHHHHHHHHhhCC-CceeeeEeHHHHH--HHHHhCCCCccEEEcCCcch
Q 017413 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYP-EITYEEVVIDNCC--MMLVKNPAAFDVLVMPNLYG 266 (372)
Q Consensus 193 AFe~A~~r~rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp-~I~~~~~~vDa~~--~~Lv~~P~~fdViv~~NlfG 266 (372)
+..+|+. +. +|+.++.+ .-..+.+++-.+... .+++ ..-|... ..+-..++.||+|++...|.
T Consensus 56 ~~~l~~~-~~-~v~~vD~~-------~~~~~~a~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 56 GLEAASE-GW-EAVLVEKD-------PEAVRLLKENVRRTGLGARV--VALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp HHHHHHT-TC-EEEEECCC-------HHHHHHHHHHHHHHTCCCEE--ECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred HHHHHHC-CC-eEEEEeCC-------HHHHHHHHHHHHHcCCceEE--EeccHHHHHHhhhccCCceEEEEECCCCc
Confidence 3444443 33 38888743 233344444333322 3433 3334332 23333456899999876564
No 111
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=21.30 E-value=2.3e+02 Score=24.90 Aligned_cols=63 Identities=10% Similarity=-0.171 Sum_probs=33.8
Q ss_pred CCceEEEEEcCCC---CcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCC-cHH---HHHHH--HhcCeEEECcc
Q 017413 39 ITPITATLFPGDG---IGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFL-TWE---SLESV--RRNKVGLKGPM 109 (372)
Q Consensus 39 ~~~~~I~vi~GDG---iGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~l-p~e---tl~~i--~~~da~L~g~~ 109 (372)
++..+|+++--+- --.++...+.+.++..|..+.+ .... ++.- ..+ .++.+ ++.|+++..+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~-------~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVV--ATGC-------GESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEE--ECCC-------SSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEE--EeCC-------CchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 3457899985443 3356667777777777765543 2221 1111 122 44544 35788888664
Q ss_pred c
Q 017413 110 A 110 (372)
Q Consensus 110 ~ 110 (372)
.
T Consensus 77 ~ 77 (290)
T 2rgy_A 77 D 77 (290)
T ss_dssp S
T ss_pred C
Confidence 3
No 112
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=21.14 E-value=99 Score=28.70 Aligned_cols=44 Identities=16% Similarity=0.081 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCCCceeeeEeHHHHHHHHHh---CCCCccEEEcC
Q 017413 219 GLFLKCCREVAEKYPEITYEEVVIDNCCMMLVK---NPAAFDVLVMP 262 (372)
Q Consensus 219 glf~~~~~eva~eYp~I~~~~~~vDa~~~~Lv~---~P~~fdViv~~ 262 (372)
..|.+++.+..+++|+|+++...++..-.+|.+ .-..+||+...
T Consensus 20 ~~~~~~i~~F~~~~p~i~V~~~~~~~~~~kl~~~~~~g~~PDv~~~~ 66 (381)
T 1elj_A 20 EVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWA 66 (381)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCcHHHHHHHHHhcCCCCcEEEeC
Confidence 467788888888899999998877654444543 33458987643
No 113
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=21.00 E-value=2.2e+02 Score=25.01 Aligned_cols=64 Identities=8% Similarity=-0.038 Sum_probs=33.0
Q ss_pred CCCceEEEEEcCCC---CcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHH--HhcCeEEECcc
Q 017413 38 DITPITATLFPGDG---IGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPM 109 (372)
Q Consensus 38 ~~~~~~I~vi~GDG---iGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i--~~~da~L~g~~ 109 (372)
.++..+|+++--|- --.++...+.+.++..|..+.+ .+..... .-..+.++.+ ++.|+++..+.
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~------~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIIL--SNSDQNM------EKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCH------HHHHHHHHHHHHTTCSEEEECCS
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEE--EeCCCCH------HHHHHHHHHHHhCCCCEEEEecC
Confidence 34567898884332 3346677777777777765544 2221100 0012234443 46788887664
No 114
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=20.75 E-value=3e+02 Score=24.18 Aligned_cols=64 Identities=6% Similarity=-0.193 Sum_probs=37.4
Q ss_pred CCceEEEEEcC----C---CCcHHHHHHHHHHHHhcCCCeEEEEEEeecccccccCCCCcHHHHHHHH--hcCeEEECcc
Q 017413 39 ITPITATLFPG----D---GIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVR--RNKVGLKGPM 109 (372)
Q Consensus 39 ~~~~~I~vi~G----D---GiGpEv~~~~~~vl~a~~~~i~~~~~~~g~~~~~~~g~~lp~etl~~i~--~~da~L~g~~ 109 (372)
++..+|+++-- + .--.+++..+.+.++..|..+.+.. ... ..-..+.++.+. +.|+++..+.
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~-------~~~~~~~~~~l~~~~vdGiIi~~~ 74 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIP--DEP-------GEKYQSLIHLVETRRVDALIVAHT 74 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEE--ECT-------TCCCHHHHHHHHHTCCSEEEECSC
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEe--CCC-------hhhHHHHHHHHHcCCCCEEEEeCC
Confidence 34577888743 2 2335677777777777786666533 211 112345556554 5889888775
Q ss_pred cC
Q 017413 110 AT 111 (372)
Q Consensus 110 ~~ 111 (372)
..
T Consensus 75 ~~ 76 (294)
T 3qk7_A 75 QP 76 (294)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 115
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=20.55 E-value=1.5e+02 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEe
Q 017413 184 QASLRVAEYAFHYAKTHGRERVSAIH 209 (372)
Q Consensus 184 ~~~eRiar~AFe~A~~r~rk~Vt~v~ 209 (372)
+.+++.+++|.++|++.+ .+++++|
T Consensus 30 ~~s~~al~~A~~lA~~~~-a~l~ll~ 54 (309)
T 3cis_A 30 PAAQVAVRWAARDAELRK-IPLTLVH 54 (309)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEE
Confidence 567889999999999875 4788876
No 116
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=20.52 E-value=1.6e+02 Score=28.29 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=38.0
Q ss_pred CCceEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHH--HHHHHH---HhCCCCccEEEcCC
Q 017413 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID--NCCMML---VKNPAAFDVLVMPN 263 (372)
Q Consensus 202 rk~Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vD--a~~~~L---v~~P~~fdViv~~N 263 (372)
...||+-+-.+ ....+.+++.++.++||+|+++...++ ....+| +..-..+||+...+
T Consensus 29 ~~tlt~w~~~~----~~~~~~~~~~~F~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 91 (458)
T 3uor_A 29 KTTVRFWAMGK----EAEVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAADGLPDVCQLGN 91 (458)
T ss_dssp CEEEEEEECTH----HHHHHHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHHHHHTTCCCSEEEEET
T ss_pred CeEEEEEecCC----cHHHHHHHHHHHHHHCCCcEEEEEEcChHHHHHHHHHHHhCCCCCCEEEECc
Confidence 34566654222 235788999999999999999988763 332222 33344799887654
No 117
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=20.49 E-value=1.5e+02 Score=27.74 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhhCCCceeeeEeH-----HHHHHHHH---hCCCCccEEEcC
Q 017413 218 DGLFLKCCREVAEKYPEITYEEVVI-----DNCCMMLV---KNPAAFDVLVMP 262 (372)
Q Consensus 218 dglf~~~~~eva~eYp~I~~~~~~v-----Da~~~~Lv---~~P~~fdViv~~ 262 (372)
...|.+++++..++||+|+++...+ |....+|. ..-..+||+...
T Consensus 14 ~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~ 66 (400)
T 2b3f_A 14 GPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLKTRMLGGDPPDTFQVH 66 (400)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEEECCCGGGHHHHHHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHHHHHHHCCCceEEEEecCCCcchhHHHHHHHHHhCCCCCCEEeec
Confidence 3678888888888999999988776 34443333 233457988665
No 118
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=20.25 E-value=49 Score=26.38 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=29.1
Q ss_pred eEEEecCcccccchHHHHHHHHHHHhhCCCceeeeEeHHHH
Q 017413 205 VSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNC 245 (372)
Q Consensus 205 Vt~v~KaNvl~~tdglf~~~~~eva~eYp~I~~~~~~vDa~ 245 (372)
.++||=..-+-..+..+..++++++++||++.+-...+|.+
T Consensus 25 ~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~ 65 (118)
T 3evi_A 25 WVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC 65 (118)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh
Confidence 44554222222246788899999999999999988888863
No 119
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=20.09 E-value=53 Score=31.71 Aligned_cols=17 Identities=41% Similarity=0.933 Sum_probs=14.3
Q ss_pred eEEEEEcCC--CCcHHHHH
Q 017413 42 ITATLFPGD--GIGPEIAE 58 (372)
Q Consensus 42 ~~I~vi~GD--GiGpEv~~ 58 (372)
.+|++-.|| ||||||+-
T Consensus 3 ~~iaIT~GDpaGIGpEii~ 21 (328)
T 1yxo_A 3 LRFALTPGEPAGIGPDLCL 21 (328)
T ss_dssp CCEEEECCSTTSSHHHHHH
T ss_pred CEEEEcCCCCcchhHHHHH
Confidence 358888998 89999984
Done!