BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017414
(372 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/343 (58%), Positives = 277/343 (80%), Gaps = 2/343 (0%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
WN ++AGY KVG+++ AR+L E+M +N +SWT +I+GYA+ + +EAI +F+RM +E
Sbjct: 185 WNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLME 244
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129
NV+PDE+ +LA LSACA LG++ELGE I +Y++ G+N V LNNA+IDMYAKSG I KA
Sbjct: 245 NVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKA 304
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
L VFE + ++V+TWTT+IAGLA HG G EAL MF+RM +A V+PN++TFIAILSAC HV
Sbjct: 305 LDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHV 364
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249
G V+LG+R FN M+S+YGI P IE YGCMIDLLGRAG L+EA+++++ MPF+ANAAIWGS
Sbjct: 365 GWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGS 424
Query: 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309
LLAASN++ D+ELGE AL LIKLEP+NSGNY +L+N+Y+ LGRW+ES +R +M+ +GV
Sbjct: 425 LLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGV 484
Query: 310 KKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
KKM G S IEV RV++F++GD +HP +R+++IL +++ Q++
Sbjct: 485 KKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQEMDLQIQ 527
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 131/304 (43%), Gaps = 40/304 (13%)
Query: 20 AKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNE---AITLFRRMQVENVKPDEI 76
+ G L A ++F N T+I + +D+PN AIT++R++ KPD
Sbjct: 58 SNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTF 117
Query: 77 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENM 136
L ++ V G IH + +G ++ V + LI MY G +G A ++F+ M
Sbjct: 118 TFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEM 177
Query: 137 KNKSVITWTTMIA---------------------------------GLALHGLGREALDM 163
K V W ++A G A G EA+++
Sbjct: 178 LVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEV 237
Query: 164 FSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 223
F RM V+P+E+T +A+LSAC +G +ELG R + + R G+ + +ID+
Sbjct: 238 FQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHR-GMNRAVSLNNAVIDMYA 296
Query: 224 RAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIK--LEPHNSGNY 281
++G + +A + + E N W +++A +G ++K + P++
Sbjct: 297 KSGNITKALDVFECVN-ERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFI 355
Query: 282 AILS 285
AILS
Sbjct: 356 AILS 359
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 347 bits (890), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 154/324 (47%), Positives = 234/324 (72%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN++++GYA++G + A+ LF LM +K ++SWT +I+GY + EA+ FR MQ+ +
Sbjct: 178 WNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGI 237
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+PDEI++++ L +CAQLG++ELG+WIH Y E+ G + NALI+MY+K G I +A+Q
Sbjct: 238 EPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQ 297
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
+F M+ K VI+W+TMI+G A HG A++ F+ M+RA+VKPN ITF+ +LSAC HVG+
Sbjct: 298 LFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGM 357
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
+ G RYF++M+ Y IEPKIE YGC+ID+L RAG L+ A ++ + MP + ++ IWGSLL
Sbjct: 358 WQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLL 417
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
++ G++++ A+ HL++LEP + GNY +L+NIYA LG+W + ++RK++R+ +KK
Sbjct: 418 SSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKK 477
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHP 335
PG S IEV+ V EFV+GD S P
Sbjct: 478 TPGGSLIEVNNIVQEFVSGDNSKP 501
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 152/326 (46%), Gaps = 39/326 (11%)
Query: 15 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK-P 73
MV K+ D++ A LF ++ NV + ++I Y + I +++++ ++ + P
Sbjct: 48 MVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELP 107
Query: 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDM-------------- 119
D +CA LG+ LG+ +H ++ ++G V NALIDM
Sbjct: 108 DRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVF 167
Query: 120 -----------------YAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALD 162
YA+ G++ KA +F M +K++++WT MI+G G EA+D
Sbjct: 168 DEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMD 227
Query: 163 MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 222
F M+ A ++P+EI+ I++L +C +G +ELG ++ ++ R G + +I++
Sbjct: 228 FFREMQLAGIEPDEISLISVLPSCAQLGSLELG-KWIHLYAERRGFLKQTGVCNALIEMY 286
Query: 223 GRAGYLQEAEKLLRRMPFEANAAI-WGSLLAASNIYGDVELGECALQHL--IKLEPHNSG 279
+ G + +A +L +M E I W ++++ +G+ + K++P+
Sbjct: 287 SKCGVISQAIQLFGQM--EGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGIT 344
Query: 280 NYAILSNIYAILGRWNESGKIRKVMR 305
+LS + G W E + +MR
Sbjct: 345 FLGLLSACSHV-GMWQEGLRYFDMMR 369
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 95 EW--IHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLA 152
EW I+ I +GL+ + ++D K + A ++F + N +V + ++I
Sbjct: 25 EWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYT 84
Query: 153 LHGLGREALDMFSRMERARVK-PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK 211
+ L + + ++ ++ R + P+ TF + +C +G LG++ + ++G
Sbjct: 85 HNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHL-CKFGPRFH 143
Query: 212 IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAA 253
+ +ID+ + L +A K+ M +E + W SLL+
Sbjct: 144 VVTENALIDMYMKFDDLVDAHKVFDEM-YERDVISWNSLLSG 184
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 344 bits (883), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 157/341 (46%), Positives = 235/341 (68%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
W TM++GYA+ G L+ +R LF+ M EK+V+ W +I G Q + +A+ LF+ MQ N
Sbjct: 326 WTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNT 385
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
KPDEI M+ LSAC+QLGA+++G WIH YIE+Y L+ V L +L+DMYAK G I +AL
Sbjct: 386 KPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALS 445
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VF ++ ++ +T+T +I GLALHG A+ F+ M A + P+EITFI +LSACCH G+
Sbjct: 446 VFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGM 505
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
++ GR YF+ MKSR+ + P+++ Y M+DLLGRAG L+EA++L+ MP EA+AA+WG+LL
Sbjct: 506 IQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALL 565
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
++G+VELGE A + L++L+P +SG Y +L +Y W ++ + R++M + GV+K
Sbjct: 566 FGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEK 625
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
+PGCS IEV+ V EF+ D S P+ +++Y L + M+
Sbjct: 626 IPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMR 666
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 154/287 (53%), Gaps = 39/287 (13%)
Query: 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM 66
L+ N + +A GD+ NAR +F+ ++++SW LI GY ++ + +AI +++ M
Sbjct: 189 LVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLM 248
Query: 67 QVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126
+ E VKPD++ M+ +S+C+ LG + G+ + Y+++ GL +PL NAL+DM++K G I
Sbjct: 249 ESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDI 308
Query: 127 GKALQVFENMKNKSVITWTTMIAGLALHGL------------------------------ 156
+A ++F+N++ +++++WTTMI+G A GL
Sbjct: 309 HEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAK 368
Query: 157 -GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG---RRYFNIMKSRYGIEPKI 212
G++AL +F M+ + KP+EIT I LSAC +G +++G RY +Y + +
Sbjct: 369 RGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIE----KYSLSLNV 424
Query: 213 EQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGD 259
++D+ + G + EA + + N+ + +++ ++GD
Sbjct: 425 ALGTSLVDMYAKCGNISEALSVFHGIQTR-NSLTYTAIIGGLALHGD 470
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 99/200 (49%), Gaps = 4/200 (2%)
Query: 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENV---KPDEIAMLAALSACAQLGAVELGE 95
N+ SW I G+++ + P E+ L+++M +PD CA L LG
Sbjct: 117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH 176
Query: 96 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHG 155
I ++ + L + ++NA I M+A G + A +VF+ + +++W +I G G
Sbjct: 177 MILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIG 236
Query: 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY 215
+A+ ++ ME VKP+++T I ++S+C +G + G+ ++ +K G+ I
Sbjct: 237 EAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN-GLRMTIPLV 295
Query: 216 GCMIDLLGRAGYLQEAEKLL 235
++D+ + G + EA ++
Sbjct: 296 NALMDMFSKCGDIHEARRIF 315
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 343 bits (880), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 160/347 (46%), Positives = 235/347 (67%), Gaps = 8/347 (2%)
Query: 2 FTLSRLLYK--------FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQM 53
F L+ LL+ WN+++ GY K G ++ A LF M EKN ISWTT+I+GY Q
Sbjct: 166 FKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQA 225
Query: 54 DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN 113
D EA+ LF MQ +V+PD +++ ALSACAQLGA+E G+WIH+Y+ + + L
Sbjct: 226 DMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLG 285
Query: 114 NALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173
LIDMYAK G++ +AL+VF+N+K KSV WT +I+G A HG GREA+ F M++ +K
Sbjct: 286 CVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIK 345
Query: 174 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233
PN ITF A+L+AC + GLVE G+ F M+ Y ++P IE YGC++DLLGRAG L EA++
Sbjct: 346 PNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKR 405
Query: 234 LLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293
++ MP + NA IWG+LL A I+ ++ELGE + LI ++P++ G Y +NI+A+ +
Sbjct: 406 FIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKK 465
Query: 294 WNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRL 340
W+++ + R++M++ GV K+PGCS I + HEF+AGD SHP+ +++
Sbjct: 466 WDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKI 512
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 127/269 (47%), Gaps = 41/269 (15%)
Query: 25 LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84
L A+ +F+ + W +I G++ D+P ++ L++RM + + + L A
Sbjct: 65 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124
Query: 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA----------------------- 121
C+ L A E IH I + G V N+LI+ YA
Sbjct: 125 CSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSW 184
Query: 122 --------KSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173
K+GK+ AL +F M K+ I+WTTMI+G + +EAL +F M+ + V+
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244
Query: 174 PNEITFIAILSACCHVGLVELGR---RYFNIMKSRYGIEPKIEQYGC-MIDLLGRAGYLQ 229
P+ ++ LSAC +G +E G+ Y N K+R ++ + GC +ID+ + G ++
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLN--KTRIRMDSVL---GCVLIDMYAKCGEME 299
Query: 230 EAEKLLRRMPFEANAAIWGSLLAASNIYG 258
EA ++ + + ++ A W +L++ +G
Sbjct: 300 EALEVFKNIKKKSVQA-WTALISGYAYHG 327
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 332 bits (852), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 238/356 (66%), Gaps = 2/356 (0%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE-N 70
W TM+ GYA D AR + M +K++++W LI+ Y Q +PNEA+ +F +Q++ N
Sbjct: 301 WTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKN 360
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
+K ++I +++ LSACAQ+GA+ELG WIH+YI+++G+ + +ALI MY+K G + K+
Sbjct: 361 MKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSR 420
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
+VF +++ + V W+ MI GLA+HG G EA+DMF +M+ A VKPN +TF + AC H G
Sbjct: 421 EVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 480
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
LV+ F+ M+S YGI P+ + Y C++D+LGR+GYL++A K + MP + ++WG+L
Sbjct: 481 LVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGAL 540
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
L A I+ ++ L E A L++LEP N G + +LSNIYA LG+W ++RK MR G+K
Sbjct: 541 LGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLK 600
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLE 366
K PGCS IE+ +HEF++GD +HP +++Y L ++ ++K + + E S VL+
Sbjct: 601 KEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLK-SNGYEPEISQVLQ 655
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 163/310 (52%), Gaps = 38/310 (12%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N+++ Y GDL++A +F + EK+V+SW ++I G+ Q P++A+ LF++M+ E+VK
Sbjct: 170 NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVK 229
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
+ M+ LSACA++ +E G + +YIE+ +N + L NA++DMY K G I A ++
Sbjct: 230 ASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRL 289
Query: 133 FENMKNKSVITWTTMIAGLAL-------------------------------HGLGREAL 161
F+ M+ K +TWTTM+ G A+ +G EAL
Sbjct: 290 FDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEAL 349
Query: 162 DMFSRME-RARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220
+F ++ + +K N+IT ++ LSAC VG +ELGR + +K ++GI +I
Sbjct: 350 IVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIK-KHGIRMNFHVTSALIH 408
Query: 221 LLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-SG 279
+ + G L+++ ++ + + + +W +++ ++G G A+ K++ N
Sbjct: 409 MYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG---CGNEAVDMFYKMQEANVKP 464
Query: 280 NYAILSNIYA 289
N +N++
Sbjct: 465 NGVTFTNVFC 474
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 125/248 (50%), Gaps = 5/248 (2%)
Query: 16 VAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN-VKPD 74
+A + L AR +F+ + + N +W TLI YA P +I F M E+ P+
Sbjct: 71 MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130
Query: 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 134
+ + A A++ ++ LG+ +H + + + V + N+LI Y G + A +VF
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 190
Query: 135 NMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 194
+K K V++W +MI G G +AL++F +ME VK + +T + +LSAC + +E
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEF 250
Query: 195 GRRYFN-IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAA 253
GR+ + I ++R + + M+D+ + G +++A++L M E + W ++L
Sbjct: 251 GRQVCSYIEENRVNV--NLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDG 307
Query: 254 SNIYGDVE 261
I D E
Sbjct: 308 YAISEDYE 315
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRR 65
R+ + + ++ Y+K GDL +R +F + +++V W+ +I G A NEA+ +F +
Sbjct: 397 RMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYK 456
Query: 66 MQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ-YGLNTIVPLNN---ALIDMYA 121
MQ NVKP+ + AC+ G V+ E + + +E YG IVP ++D+
Sbjct: 457 MQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYG---IVPEEKHYACIVDVLG 513
Query: 122 KSGKIGKALQVFENMK-NKSVITWTTMIAGLALHG 155
+SG + KA++ E M S W ++ +H
Sbjct: 514 RSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 548
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 330 bits (847), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 154/346 (44%), Positives = 227/346 (65%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WNTM+ GYA+ G ++ A+ LF+ M +++ +SW +IAGY+Q EA+ LF +M+ E
Sbjct: 346 WNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG 405
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+ + + +ALS CA + A+ELG+ +H + + G T + NAL+ MY K G I +A
Sbjct: 406 RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAND 465
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
+F+ M K +++W TMIAG + HG G AL F M+R +KP++ T +A+LSAC H GL
Sbjct: 466 LFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGL 525
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
V+ GR+YF M YG+ P + Y CM+DLLGRAG L++A L++ MPFE +AAIWG+LL
Sbjct: 526 VDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLL 585
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
AS ++G+ EL E A + +EP NSG Y +LSN+YA GRW + GK+R MRD GVKK
Sbjct: 586 GASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKK 645
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHL 357
+PG S+IE+ + H F GD HP+ D ++ L +++ +MK A ++
Sbjct: 646 VPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYV 691
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 43/289 (14%)
Query: 2 FTLSRLLYK--------FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQM 53
F L+R L+ WN M+ GY + +L AR LFE+M E++V SW T+++GYAQ
Sbjct: 111 FELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQN 170
Query: 54 DQPNEAITLFRRMQ--------------VENVKPDEIAML-------AALSACAQLGAVE 92
++A ++F RM V+N K +E ML A +S LG
Sbjct: 171 GCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFV 230
Query: 93 LGEWI---HNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIA 149
+ I + + + +V N +I YA+SGKI +A Q+F+ + V TWT M++
Sbjct: 231 KKKKIVEARQFFDSMNVRDVVSW-NTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVS 289
Query: 150 GLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE 209
G + + EA ++F +M + NE+++ A+L+ +E+ + F++M R
Sbjct: 290 GYIQNRMVEEARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCR---- 341
Query: 210 PKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258
+ + MI + G + EA+ L +MP + + W +++A + G
Sbjct: 342 -NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSG 388
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 77/149 (51%), Gaps = 12/149 (8%)
Query: 37 EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEW 96
+ ++ W I+ Y + + NEA+ +F+RM + ++ +S + G EL
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMP----RWSSVSYNGMISGYLRNGEFELARK 116
Query: 97 IHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGL 156
+ + + + L + N +I Y ++ +GKA ++FE M + V +W TM++G A +G
Sbjct: 117 LFDEMPERDLVSW----NVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGC 172
Query: 157 GREALDMFSRMERARVKPNEITFIAILSA 185
+A +F RM + N++++ A+LSA
Sbjct: 173 VDDARSVFDRMP----EKNDVSWNALLSA 197
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 327 bits (837), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 228/355 (64%), Gaps = 7/355 (1%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN- 70
WN++V YAK G +++AR LF+ M E+NVISW+ LI GY + EA+ LFR MQ+
Sbjct: 131 WNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKP 190
Query: 71 ----VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126
V+P+E M LSAC +LGA+E G+W+H YI++Y + + L ALIDMYAK G +
Sbjct: 191 NEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSL 250
Query: 127 GKALQVFENM-KNKSVITWTTMIAGLALHGLGREALDMFSRMERA-RVKPNEITFIAILS 184
+A +VF + K V ++ MI LA++GL E +FS M + + PN +TF+ IL
Sbjct: 251 ERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILG 310
Query: 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA 244
AC H GL+ G+ YF +M +GI P I+ YGCM+DL GR+G ++EAE + MP E +
Sbjct: 311 ACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDV 370
Query: 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304
IWGSLL+ S + GD++ E AL+ LI+L+P NSG Y +LSN+YA GRW E IR M
Sbjct: 371 LIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEM 430
Query: 305 RDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQN 359
G+ K+PGCSY+EV VHEFV GD S + +R+Y +L +I +++ A ++ +
Sbjct: 431 EVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTD 485
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 37/240 (15%)
Query: 55 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI----- 109
Q + I+++ RM+ V PD L + + LG+ H I +GL+
Sbjct: 42 QRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRT 101
Query: 110 --------------------------VPLNNALIDMYAKSGKIGKALQVFENMKNKSVIT 143
+P N++++ YAK+G I A ++F+ M ++VI+
Sbjct: 102 SLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVIS 161
Query: 144 WTTMIAGLALHGLGREALDMFSRME-----RARVKPNEITFIAILSACCHVGLVELGRRY 198
W+ +I G + G +EALD+F M+ A V+PNE T +LSAC +G +E G ++
Sbjct: 162 WSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQG-KW 220
Query: 199 FNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258
+ +Y +E I +ID+ + G L+ A+++ + + + + +++ +YG
Sbjct: 221 VHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYG 280
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 325 bits (834), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 148/344 (43%), Positives = 231/344 (67%)
Query: 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
WN M+ GY ++GD AR LF+ M +++V+SW T+I+GY+ +A+ +FR M+ +
Sbjct: 210 LWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD 269
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
++P+ + +++ L A ++LG++ELGEW+H Y E G+ L +ALIDMY+K G I KA+
Sbjct: 270 IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAI 329
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
VFE + ++VITW+ MI G A+HG +A+D F +M +A V+P+++ +I +L+AC H G
Sbjct: 330 HVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGG 389
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
LVE GRRYF+ M S G+EP+IE YGCM+DLLGR+G L EAE+ + MP + + IW +L
Sbjct: 390 LVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKAL 449
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
L A + G+VE+G+ L+ + PH+SG Y LSN+YA G W+E ++R M++ ++
Sbjct: 450 LGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIR 509
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 354
K PGCS I++ +HEFV D SHP + +L +I+ +++ A
Sbjct: 510 KDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLA 553
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 135/283 (47%), Gaps = 50/283 (17%)
Query: 24 DLNNARALFELMTEKNVISWTTLIAGYAQMDQPNE--AITLFRRMQV-ENVKPDEIAMLA 80
DL+ A +F M ++N SW T+I G+++ D+ AITLF M E V+P+ +
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 81 ALSACAQLGAVELGEWIHNYIEQYGL-----------------------------NTI-- 109
L ACA+ G ++ G+ IH +YG N I
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 110 --------------VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHG 155
+ L N +ID Y + G A +F+ M+ +SV++W TMI+G +L+G
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253
Query: 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY 215
++A+++F M++ ++PN +T +++L A +G +ELG + ++ GI
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLG 312
Query: 216 GCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258
+ID+ + G +++A + R+P E N W +++ I+G
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIHG 354
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 323 bits (828), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 147/342 (42%), Positives = 232/342 (67%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
MV A+ GD+ AR LFE M E++ I+W +I+GYAQ+ + EA+ +F MQ+E VK
Sbjct: 178 TAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVK 237
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
+ +AM++ LSAC QLGA++ G W H+YIE+ + V L L+D+YAK G + KA++V
Sbjct: 238 VNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEV 297
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F M+ K+V TW++ + GLA++G G + L++FS M++ V PN +TF+++L C VG V
Sbjct: 298 FWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFV 357
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
+ G+R+F+ M++ +GIEP++E YGC++DL RAG L++A ++++MP + +AA+W SLL
Sbjct: 358 DEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLH 417
Query: 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 312
AS +Y ++ELG A + +++LE N G Y +LSNIYA W+ +R+ M+ GV+K
Sbjct: 418 ASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQ 477
Query: 313 PGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 354
PGCS +EV+ VHEF GD SHP + ++ + I+ +++ A
Sbjct: 478 PGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLA 519
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 35/260 (13%)
Query: 25 LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM--QVENVKPDEIAMLAAL 82
L+ A + + + + + ++I + + P ++ +RR+ ++KPD + +
Sbjct: 56 LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLV 115
Query: 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY---------------------- 120
AC L E G +H + G + + LI +Y
Sbjct: 116 QACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFV 175
Query: 121 ---------AKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERAR 171
A+ G + A ++FE M + I W MI+G A G REAL++F M+
Sbjct: 176 CRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEG 235
Query: 172 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 231
VK N + I++LSAC +G ++ GR + ++ R I+ + ++DL + G +++A
Sbjct: 236 VKVNGVAMISVLSACTQLGALDQGRWAHSYIE-RNKIKITVRLATTLVDLYAKCGDMEKA 294
Query: 232 EKLLRRMPFEANAAIWGSLL 251
++ M E N W S L
Sbjct: 295 MEVFWGME-EKNVYTWSSAL 313
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 78/145 (53%), Gaps = 2/145 (1%)
Query: 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRR 65
++ + T+V YAK GD+ A +F M EKNV +W++ + G A + + LF
Sbjct: 272 KITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSL 331
Query: 66 MQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE-QYGLNTIVPLNNALIDMYAKSG 124
M+ + V P+ + ++ L C+ +G V+ G+ + + ++G+ + L+D+YA++G
Sbjct: 332 MKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAG 391
Query: 125 KIGKALQVFENMKNKS-VITWTTMI 148
++ A+ + + M K W++++
Sbjct: 392 RLEDAVSIIQQMPMKPHAAVWSSLL 416
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 321 bits (823), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 158/337 (46%), Positives = 220/337 (65%), Gaps = 2/337 (0%)
Query: 10 KFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
K N ++ Y+K G+L A LFE + K+VISW TLI GY M+ EA+ LF+ M
Sbjct: 302 KIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 361
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY--GLNTIVPLNNALIDMYAKSGKIG 127
P+++ ML+ L ACA LGA+++G WIH YI++ G+ L +LIDMYAK G I
Sbjct: 362 GETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 421
Query: 128 KALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 187
A QVF ++ +KS+ +W MI G A+HG + D+FSRM + ++P++ITF+ +LSAC
Sbjct: 422 AAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACS 481
Query: 188 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIW 247
H G+++LGR F M Y + PK+E YGCMIDLLG +G +EAE+++ M E + IW
Sbjct: 482 HSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIW 541
Query: 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307
SLL A ++G+VELGE ++LIK+EP N G+Y +LSNIYA GRWNE K R ++ D
Sbjct: 542 CSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDK 601
Query: 308 GVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQIL 344
G+KK+PGCS IE+ VHEF+ GD HP +Y +L
Sbjct: 602 GMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 146/248 (58%), Gaps = 2/248 (0%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
+ ++ GYA G + NA+ LF+ + K+V+SW +I+GYA+ EA+ LF+ M NV
Sbjct: 203 YTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV 262
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+PDE M+ +SACAQ G++ELG +H +I+ +G + + + NALID+Y+K G++ A
Sbjct: 263 RPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACG 322
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
+FE + K VI+W T+I G L +EAL +F M R+ PN++T ++IL AC H+G
Sbjct: 323 LFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 382
Query: 192 VELGRR-YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
+++GR + I K G+ +ID+ + G ++ A ++ + + + W ++
Sbjct: 383 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAM 441
Query: 251 LAASNIYG 258
+ ++G
Sbjct: 442 IFGFAMHG 449
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 33/260 (12%)
Query: 25 LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84
L A ++F+ + E N++ W T+ G+A P A+ L+ M + P+ L +
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143
Query: 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN------ 138
CA+ A + G+ IH ++ + G + + ++ +LI MY ++G++ A +VF+ +
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203
Query: 139 -------------------------KSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173
K V++W MI+G A G +EAL++F M + V+
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 174 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233
P+E T + ++SAC G +ELGR+ ++ +G ++ +IDL + G L+ A
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACG 322
Query: 234 LLRRMPFEANAAIWGSLLAA 253
L R+P++ + W +L+
Sbjct: 323 LFERLPYK-DVISWNTLIGG 341
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 319 bits (817), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 152/334 (45%), Positives = 219/334 (65%), Gaps = 3/334 (0%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQ-VEN 70
W TM+ GY + D++ AR LF+ M E+N++SW T+I GY Q QP E I LF+ MQ +
Sbjct: 210 WTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTS 269
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
+ PD++ +L+ L A + GA+ LGEW H ++++ L+ V + A++DMY+K G+I KA
Sbjct: 270 LDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAK 329
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
++F+ M K V +W MI G AL+G R ALD+F M KP+EIT +A+++AC H G
Sbjct: 330 RIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTM-MIEEKPDEITMLAVITACNHGG 388
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
LVE GR++F++M+ G+ KIE YGCM+DLLGRAG L+EAE L+ MPFE N I S
Sbjct: 389 LVEEGRKWFHVMR-EMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNGIILSSF 447
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
L+A Y D+E E L+ ++LEP N GNY +L N+YA RW++ G ++ VMR K
Sbjct: 448 LSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAK 507
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQIL 344
K GCS IE++ V EF++GDT+HP ++ +L
Sbjct: 508 KEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVL 541
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 138/332 (41%), Gaps = 27/332 (8%)
Query: 11 FWNTMVAGYAKVGDLNNARALFELMTEKN-VISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
F +V + VG + AR LF+ +++ ++I Y + Q ++ L+R ++ E
Sbjct: 13 FTKFLVISASAVG-IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKE 71
Query: 70 NV-KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK 128
PD +C+ V G +H+ I ++G + ++ ++DMYAK GK+G
Sbjct: 72 TCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGC 131
Query: 129 ALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH 188
A F+ M ++S ++WT +I+G G A +F +M + + + + A++
Sbjct: 132 ARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVK---DVVIYNAMMDGFVK 188
Query: 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWG 248
G + RR F+ M + I + MI + A KL MP E N W
Sbjct: 189 SGDMTSARRLFDEMTHKTVI-----TWTTMIHGYCNIKDIDAARKLFDAMP-ERNLVSWN 242
Query: 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI-------LGRWNESGKIR 301
+++ + G Q + + + ILS + AI LG W R
Sbjct: 243 TMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQR 302
Query: 302 KVMRDMGVKKMPG-------CSYIEVSKRVHE 326
K + D VK C IE +KR+ +
Sbjct: 303 KKL-DKKVKVCTAILDMYSKCGEIEKAKRIFD 333
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 317 bits (812), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 241/360 (66%), Gaps = 4/360 (1%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N+++ YA GD+ +A +F+ M EK++++W ++I G+A+ +P EA+ L+ M + +K
Sbjct: 160 NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 219
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
PD +++ LSACA++GA+ LG+ +H Y+ + GL + +N L+D+YA+ G++ +A +
Sbjct: 220 PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 279
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAILSACCHVGL 191
F+ M +K+ ++WT++I GLA++G G+EA+++F ME + P EITF+ IL AC H G+
Sbjct: 280 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 339
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
V+ G YF M+ Y IEP+IE +GCM+DLL RAG +++A + ++ MP + N IW +LL
Sbjct: 340 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 399
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
A ++GD +L E A +++LEP++SG+Y +LSN+YA RW++ KIRK M GVKK
Sbjct: 400 GACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKK 459
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK---FAEHLQNEFSGVLESD 368
+PG S +EV RVHEF+ GD SHP D +Y L ++ G+++ + + N + V E +
Sbjct: 460 VPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEE 519
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 3/221 (1%)
Query: 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVEN-VKPDEIAMLAALSACAQLGAVELGEWI 97
NV W TLI GYA++ A +L+R M+V V+PD + A + V LGE I
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 98 HNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLG 157
H+ + + G +++ + N+L+ +YA G + A +VF+ M K ++ W ++I G A +G
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203
Query: 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGC 217
EAL +++ M +KP+ T +++LSAC +G + LG+R ++ + G+ +
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKR-VHVYMIKVGLTRNLHSSNV 262
Query: 218 MIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258
++DL R G ++EA+ L M + N+ W SL+ + G
Sbjct: 263 LLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNG 302
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 317 bits (811), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 148/348 (42%), Positives = 228/348 (65%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
W ++V GY + G+L AR F+ M ++ ISWT +I GY + NE++ +FR MQ +
Sbjct: 305 WTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
PDE M++ L+ACA LG++E+GEWI YI++ + V + NALIDMY K G KA +
Sbjct: 365 IPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQK 424
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VF +M + TWT M+ GLA +G G+EA+ +F +M+ ++P++IT++ +LSAC H G+
Sbjct: 425 VFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGM 484
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
V+ R++F M+S + IEP + YGCM+D+LGRAG ++EA ++LR+MP N+ +WG+LL
Sbjct: 485 VDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALL 544
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
AS ++ D + E A + +++LEP N YA+L NIYA RW + ++R+ + D+ +KK
Sbjct: 545 GASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKK 604
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQN 359
PG S IEV+ HEFVAGD SH + +Y L ++ + FA +L +
Sbjct: 605 TPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQESTFAAYLPD 652
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 149/308 (48%), Gaps = 11/308 (3%)
Query: 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITL 62
T + L+ FW + + G+ ++ A LF + E +V+ W +I G++++D E + L
Sbjct: 67 TFQKKLFVFWCSRLGGH-----VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRL 121
Query: 63 FRRMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121
+ M E V PD L+ + G A+ G+ +H ++ ++GL + + + NAL+ MY+
Sbjct: 122 YLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYS 181
Query: 122 KSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA 181
G + A VF+ + V +W MI+G E++++ MER V P +T +
Sbjct: 182 LCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLL 241
Query: 182 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 241
+LSAC V +L +R + S EP + +++ G + A ++ R M
Sbjct: 242 VLSACSKVKDKDLCKRVHEYV-SECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMK-A 299
Query: 242 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 301
+ W S++ G+++L A + ++ + ++ I+ + Y G +NES +I
Sbjct: 300 RDVISWTSIVKGYVERGNLKL---ARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356
Query: 302 KVMRDMGV 309
+ M+ G+
Sbjct: 357 REMQSAGM 364
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 316 bits (810), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 146/343 (42%), Positives = 229/343 (66%)
Query: 14 TMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP 73
M+ Y++ G + A LF+ + K+ + WT +I G + + N+A+ LFR MQ+ENV
Sbjct: 194 VMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSA 253
Query: 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVF 133
+E + LSAC+ LGA+ELG W+H+++E + + NALI+MY++ G I +A +VF
Sbjct: 254 NEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVF 313
Query: 134 ENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 193
M++K VI++ TMI+GLA+HG EA++ F M +PN++T +A+L+AC H GL++
Sbjct: 314 RVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLD 373
Query: 194 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAA 253
+G FN MK + +EP+IE YGC++DLLGR G L+EA + + +P E + + G+LL+A
Sbjct: 374 IGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSA 433
Query: 254 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMP 313
I+G++ELGE + L + E +SG Y +LSN+YA G+W ES +IR+ MRD G++K P
Sbjct: 434 CKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEP 493
Query: 314 GCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEH 356
GCS IEV ++HEF+ GD +HP + +YQ L ++N ++F E+
Sbjct: 494 GCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQELNRILRFKEN 536
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 20 AKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79
+ + ++ A +F ++ NV +T +I G+ + + ++L+ RM +V PD +
Sbjct: 72 STLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVIT 131
Query: 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK-------------- 125
+ L AC +++ IH + + G + + ++++Y KSG+
Sbjct: 132 SVLKACD----LKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDR 187
Query: 126 -----------------IGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRME 168
I +AL++F+++K K + WT MI GL + +AL++F M+
Sbjct: 188 DHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQ 247
Query: 169 RARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 228
V NE T + +LSAC +G +ELGR + ++++ +E +I++ R G +
Sbjct: 248 MENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQR-MELSNFVGNALINMYSRCGDI 306
Query: 229 QEAEKLLRRM 238
EA ++ R M
Sbjct: 307 NEARRVFRVM 316
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 313 bits (802), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 140/345 (40%), Positives = 226/345 (65%)
Query: 15 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 74
MV+GY+K G L++A+ +F+ +K+++ WTT+I+ Y + D P EA+ +F M +KPD
Sbjct: 284 MVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPD 343
Query: 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 134
++M + +SACA LG ++ +W+H+ I GL + + +NNALI+MYAK G + VFE
Sbjct: 344 VVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFE 403
Query: 135 NMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 194
M ++V++W++MI L++HG +AL +F+RM++ V+PNE+TF+ +L C H GLVE
Sbjct: 404 KMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEE 463
Query: 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAAS 254
G++ F M Y I PK+E YGCM+DL GRA L+EA +++ MP +N IWGSL++A
Sbjct: 464 GKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSAC 523
Query: 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPG 314
I+G++ELG+ A + +++LEP + G ++SNIYA RW + IR+VM + V K G
Sbjct: 524 RIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKG 583
Query: 315 CSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQN 359
S I+ + + HEF+ GD H + +Y L ++ ++K A ++ +
Sbjct: 584 LSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPD 628
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 138/290 (47%), Gaps = 34/290 (11%)
Query: 2 FTLSRLLYKFWNT-MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAI 60
F ++ L F T + YA G +N AR +F+ M+ ++V++W T+I Y + +EA
Sbjct: 138 FKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAF 197
Query: 61 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 120
LF M+ NV PDE+ + +SAC + G + I+ ++ + + L AL+ MY
Sbjct: 198 KLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMY 257
Query: 121 A-------------------------------KSGKIGKALQVFENMKNKSVITWTTMIA 149
A K G++ A +F+ + K ++ WTTMI+
Sbjct: 258 AGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMIS 317
Query: 150 GLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE 209
+EAL +F M + +KP+ ++ +++SAC ++G+++ + + + G+E
Sbjct: 318 AYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN-GLE 376
Query: 210 PKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGD 259
++ +I++ + G L + +MP N W S++ A +++G+
Sbjct: 377 SELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMHGE 425
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N ++ YAK G L+ R +FE M +NV+SW+++I + + ++A++LF RM+ ENV+
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442
Query: 73 PDEIAMLAALSACAQLGAVELGEWIH-NYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
P+E+ + L C+ G VE G+ I + ++Y + + ++D++ ++ + +AL+
Sbjct: 443 PNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALE 502
Query: 132 VFENMKNKS-VITWTTMIAGLALHG 155
V E+M S V+ W ++++ +HG
Sbjct: 503 VIESMPVASNVVIWGSLMSACRIHG 527
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Query: 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNY 100
I + + ++ +P I ++R++ + D+ + L L A +++ A+ G +H
Sbjct: 77 IVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGV 136
Query: 101 IEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREA 160
+ + +DMYA G+I A VF+ M ++ V+TW TMI GL EA
Sbjct: 137 AFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEA 196
Query: 161 LDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220
+F M+ + V P+E+ I+SAC G + R + + + ++
Sbjct: 197 FKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEN-DVRMDTHLLTALVT 255
Query: 221 LLGRAGYLQEAEKLLRRM 238
+ AG + A + R+M
Sbjct: 256 MYAGAGCMDMAREFFRKM 273
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 313 bits (801), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 223/341 (65%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
T+V YAK G + AR++F+ M EK++++W+T+I GYA P E I LF +M EN+K
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLK 310
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
PD+ +++ LS+CA LGA++LGEW + I+++ T + + NALIDMYAK G + + +V
Sbjct: 311 PDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEV 370
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F+ MK K ++ I+GLA +G + + +F + E+ + P+ TF+ +L C H GL+
Sbjct: 371 FKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLI 430
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
+ G R+FN + Y ++ +E YGCM+DL GRAG L +A +L+ MP NA +WG+LL+
Sbjct: 431 QDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS 490
Query: 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 312
+ D +L E L+ LI LEP N+GNY LSNIY++ GRW+E+ ++R +M G+KK+
Sbjct: 491 GCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKI 550
Query: 313 PGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKF 353
PG S+IE+ +VHEF+A D SHP D++Y L + +M+
Sbjct: 551 PGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRL 591
Score = 147 bits (372), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 138/240 (57%), Gaps = 5/240 (2%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
++++ Y+ G LN+A LF+ + +++V++WT L +GY + EAI LF++M VK
Sbjct: 150 TSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVK 209
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
PD ++ LSAC +G ++ GEWI Y+E+ + + L+++YAK GK+ KA V
Sbjct: 210 PDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSV 269
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F++M K ++TW+TMI G A + +E +++F +M + +KP++ + + LS+C +G +
Sbjct: 270 FDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGAL 329
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE----ANAAIWG 248
+LG +++ R+ + +ID+ + G + ++ + M + NAAI G
Sbjct: 330 DLGEWGISLI-DRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISG 388
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 133/277 (48%), Gaps = 16/277 (5%)
Query: 31 LFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 90
LF N+ + +LI G+ +E + LF ++ + L AC + +
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 91 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAG 150
+LG +H+ + + G N V +L+ +Y+ SG++ A ++F+ + ++SV+TWT + +G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186
Query: 151 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP 210
G REA+D+F +M VKP+ + +LSAC HVG ++ G I+K +E
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEW---IVKYMEEMEM 243
Query: 211 KIEQY--GCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA--ASNIYGD--VELGE 264
+ + +++L + G +++A + M E + W +++ ASN + +EL
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMIQGYASNSFPKEGIELFL 302
Query: 265 CALQHLIKLEPHNSGNYAILSNIYAI----LGRWNES 297
LQ L+P LS+ ++ LG W S
Sbjct: 303 QMLQE--NLKPDQFSIVGFLSSCASLGALDLGEWGIS 337
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 309 bits (792), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/335 (43%), Positives = 221/335 (65%), Gaps = 2/335 (0%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
W+TMV GY+K GD+ AR +F+ M KNV++WT +IAGYA+ EA L +M
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS 309
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129
+K D A+++ L+AC + G + LG IH+ +++ L + + NAL+DMYAK G + KA
Sbjct: 310 GLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKA 369
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
VF ++ K +++W TM+ GL +HG G+EA+++FSRM R ++P+++TFIA+L +C H
Sbjct: 370 FDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHA 429
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249
GL++ G YF M+ Y + P++E YGC++DLLGR G L+EA K+++ MP E N IWG+
Sbjct: 430 GLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGA 489
Query: 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309
LL A ++ +V++ + L +L+KL+P + GNY++LSNIYA W IR M+ MGV
Sbjct: 490 LLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGV 549
Query: 310 KKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQIL 344
+K G S +E+ +HEF D SHP D++YQ+L
Sbjct: 550 EKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQML 584
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 43/249 (17%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN+M+ G K G+L +AR LF+ M ++++ISW T++ GYA+ + ++A LF +M N
Sbjct: 188 WNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNT 247
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
W + ++ Y+K+G + A
Sbjct: 248 V----------------------SW-----------------STMVMGYSKAGDMEMARV 268
Query: 132 VFENM--KNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
+F+ M K+V+TWT +IAG A GL +EA + +M + +K + I+IL+AC
Sbjct: 269 MFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTES 328
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249
GL+ LG R +I+K R + ++D+ + G L++A + +P + + W +
Sbjct: 329 GLLSLGMRIHSILK-RSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIP-KKDLVSWNT 386
Query: 250 LLAASNIYG 258
+L ++G
Sbjct: 387 MLHGLGVHG 395
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 124/287 (43%), Gaps = 44/287 (15%)
Query: 26 NNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85
N A +F + E NV +LI +AQ QP +A +F MQ + D L AC
Sbjct: 68 NLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKAC 127
Query: 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG--KALQVFENMKNKSVIT 143
+ + + + +HN+IE+ GL++ + + NALID Y++ G +G A+++FE M + ++
Sbjct: 128 SGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVS 187
Query: 144 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203
W +M+ GL G R+A RR F+ M
Sbjct: 188 WNSMLGGLVKAGELRDA-----------------------------------RRLFDEMP 212
Query: 204 SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELG 263
R I + M+D R + +A +L +MP E N W +++ + GD+E+
Sbjct: 213 QRDLI-----SWNTMLDGYARCREMSKAFELFEKMP-ERNTVSWSTMVMGYSKAGDMEMA 266
Query: 264 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
+ L N + I+ YA G E+ ++ M G+K
Sbjct: 267 RVMFDKM-PLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLK 312
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 138
L L CA L V+ +H I + L+ + + LI + + A++VF ++
Sbjct: 23 LQDLPKCANLNQVK---QLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQE 79
Query: 139 KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRY 198
+V ++I A + +A +FS M+R + + T+ +L AC + + +
Sbjct: 80 PNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMM 139
Query: 199 FNIMKSRYGIEPKIEQYGCMIDLLGRAGYL--QEAEKLLRRMPFEANAAIWGSLLAASNI 256
N ++ + G+ I +ID R G L ++A KL +M E + W S+L
Sbjct: 140 HNHIE-KLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMS-ERDTVSWNSMLG---- 193
Query: 257 YGDVELGE 264
G V+ GE
Sbjct: 194 -GLVKAGE 200
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 308 bits (790), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 148/361 (40%), Positives = 228/361 (63%), Gaps = 9/361 (2%)
Query: 2 FTLSRLLYKF--------WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQM 53
F +RL++ + WNTM+ GY + G ++NA +F+ M E+++ISWT +I G+ +
Sbjct: 125 FKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKK 184
Query: 54 DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN 113
EA+ FR MQ+ VKPD +A++AAL+AC LGA+ G W+H Y+ V ++
Sbjct: 185 GYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVS 244
Query: 114 NALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173
N+LID+Y + G + A QVF NM+ ++V++W ++I G A +G E+L F +M+ K
Sbjct: 245 NSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFK 304
Query: 174 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233
P+ +TF L+AC HVGLVE G RYF IMK Y I P+IE YGC++DL RAG L++A K
Sbjct: 305 PDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALK 364
Query: 234 LLRRMPFEANAAIWGSLLAASNIYG-DVELGECALQHLIKLEPHNSGNYAILSNIYAILG 292
L++ MP + N + GSLLAA + +G ++ L E ++HL L + NY ILSN+YA G
Sbjct: 365 LVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADG 424
Query: 293 RWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
+W + K+R+ M+ +G+KK PG S IE+ +H F+AGD +H + + ++L I+ ++
Sbjct: 425 KWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLR 484
Query: 353 F 353
Sbjct: 485 L 485
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 36/250 (14%)
Query: 36 TEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL--GAVEL 93
T + +SWT+ I + + EA F M + V+P+ I +A LS C G+ L
Sbjct: 32 TSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEAL 91
Query: 94 GEWIHNYIEQYGLN-TIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIA--- 149
G+ +H Y + GL+ V + A+I MY+K G+ KA VF+ M++K+ +TW TMI
Sbjct: 92 GDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYM 151
Query: 150 ----------------------------GLALHGLGREALDMFSRMERARVKPNEITFIA 181
G G EAL F M+ + VKP+ + IA
Sbjct: 152 RSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIA 211
Query: 182 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 241
L+AC ++G + G + S+ + + +IDL R G ++ A ++ M +
Sbjct: 212 ALNACTNLGALSFGLWVHRYVLSQ-DFKNNVRVSNSLIDLYCRCGCVEFARQVFYNME-K 269
Query: 242 ANAAIWGSLL 251
W S++
Sbjct: 270 RTVVSWNSVI 279
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 34/155 (21%)
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC--- 186
+Q +++ ++WT+ I L +G EA FS M A V+PN ITFIA+LS C
Sbjct: 25 IQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDF 84
Query: 187 ---------------CHVGL----VELGRRYFNIMKSR-----------YGIEPKIEQYG 216
C +GL V +G + R Y + +
Sbjct: 85 TSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWN 144
Query: 217 CMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
MID R+G + A K+ +MP E + W +++
Sbjct: 145 TMIDGYMRSGQVDNAAKMFDKMP-ERDLISWTAMI 178
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 307 bits (787), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 149/347 (42%), Positives = 224/347 (64%), Gaps = 2/347 (0%)
Query: 15 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE-NVKP 73
M+ YAK G++ ARALF+ M E++++SW +I GYAQ PN+A+ LF+++ E KP
Sbjct: 198 MITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKP 257
Query: 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVF 133
DEI ++AALSAC+Q+GA+E G WIH +++ + V + LIDMY+K G + +A+ VF
Sbjct: 258 DEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVF 317
Query: 134 ENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER-ARVKPNEITFIAILSACCHVGLV 192
+ K ++ W MIAG A+HG ++AL +F+ M+ ++P +ITFI L AC H GLV
Sbjct: 318 NDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLV 377
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
G R F M YGI+PKIE YGC++ LLGRAG L+ A + ++ M +A++ +W S+L
Sbjct: 378 NEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLG 437
Query: 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 312
+ ++GD LG+ ++LI L NSG Y +LSNIYA +G + K+R +M++ G+ K
Sbjct: 438 SCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKE 497
Query: 313 PGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQN 359
PG S IE+ +VHEF AGD H +Y +L KI+ ++K ++ N
Sbjct: 498 PGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPN 544
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 124/273 (45%), Gaps = 38/273 (13%)
Query: 18 GYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA 77
YA G + ++ ALF + ++ +T I + ++A L+ ++ + P+E
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 137
+ L +C+ + G+ IH ++ ++GL + L+D+YAK G + A +VF+ M
Sbjct: 133 FSSLLKSCS----TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 138 NKS-------------------------------VITWTTMIAGLALHGLGREALDMFSR 166
+S +++W MI G A HG +AL +F +
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 167 -MERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 225
+ + KP+EIT +A LSAC +G +E GR +KS I ++ +ID+ +
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSR-IRLNVKVCTGLIDMYSKC 307
Query: 226 GYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258
G L+EA + P + W +++A ++G
Sbjct: 308 GSLEEAVLVFNDTP-RKDIVAWNAMIAGYAMHG 339
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 6/160 (3%)
Query: 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRR 65
RL K ++ Y+K G L A +F K++++W +IAGYA +A+ LF
Sbjct: 291 RLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNE 350
Query: 66 MQ-VENVKPDEIAMLAALSACAQLGAVELGEWIHNYI-EQYGLNTIVPLNNALIDMYAKS 123
MQ + ++P +I + L ACA G V G I + ++YG+ + L+ + ++
Sbjct: 351 MQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRA 410
Query: 124 GKIGKALQVFENMK-NKSVITWTTMIAGLALHG---LGRE 159
G++ +A + +NM + + W++++ LHG LG+E
Sbjct: 411 GQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKE 450
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 112 LNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERAR 171
LN L YA GKI +L +F + + +T I +++GL +A ++ ++ +
Sbjct: 66 LNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSE 125
Query: 172 VKPNEITFIAILSACCHVGLVELGRR-YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 230
+ PNE TF ++L +C + G+ + +++K GI+P + ++D+ + G +
Sbjct: 126 INPNEFTFSSLLKSCS----TKSGKLIHTHVLKFGLGIDPYVAT--GLVDVYAKGGDVVS 179
Query: 231 AEKLLRRMP 239
A+K+ RMP
Sbjct: 180 AQKVFDRMP 188
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 306 bits (784), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 146/351 (41%), Positives = 222/351 (63%), Gaps = 4/351 (1%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEK----NVISWTTLIAGYAQMDQPNEAITLFRRMQV 68
N + G ++ G ++ A +FEL E+ NV+SWT++IAG AQ + EA+ LFR MQV
Sbjct: 322 NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQV 381
Query: 69 ENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK 128
VKP+ + + + L AC + A+ G H + + L V + +ALIDMYAK G+I
Sbjct: 382 AGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINL 441
Query: 129 ALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH 188
+ VF M K+++ W +++ G ++HG +E + +F + R R+KP+ I+F ++LSAC
Sbjct: 442 SQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQ 501
Query: 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWG 248
VGL + G +YF +M YGI+P++E Y CM++LLGRAG LQEA L++ MPFE ++ +WG
Sbjct: 502 VGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWG 561
Query: 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308
+LL + + +V+L E A + L LEP N G Y +LSNIYA G W E IR M +G
Sbjct: 562 ALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLG 621
Query: 309 VKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQN 359
+KK PGCS+I+V RV+ +AGD SHP D++ + + +I+ +M+ + H N
Sbjct: 622 LKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPN 672
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 136/285 (47%), Gaps = 41/285 (14%)
Query: 13 NTMVAGYAKVGDLNNA-RALFELMT---EKNVISWTTLIAGYAQMDQPNEAITLFRRMQV 68
+ ++ YA+ G L R L E+ + E N++SW +++G+ + EA+ +F+++
Sbjct: 186 SALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHH 245
Query: 69 ENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK--- 125
PD++ + + L + + +G IH Y+ + GL + +A+IDMY KSG
Sbjct: 246 LGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYG 305
Query: 126 ----------------------------IGKALQVFENMKNKS----VITWTTMIAGLAL 153
+ KAL++FE K ++ V++WT++IAG A
Sbjct: 306 IISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQ 365
Query: 154 HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE 213
+G EAL++F M+ A VKPN +T ++L AC ++ + GR R + +
Sbjct: 366 NGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGF-AVRVHLLDNVH 424
Query: 214 QYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258
+ID+ + G + ++ + MP + N W SL+ +++G
Sbjct: 425 VGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHG 468
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 87/171 (50%)
Query: 15 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 74
++A Y+ N+A + + + + + S+++LI + ++I +F RM + PD
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115
Query: 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 134
+ CA+L A ++G+ IH GL+ + ++ MY + G++G A +VF+
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175
Query: 135 NMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 185
M +K V+T + ++ A G E + + S ME + ++ N +++ ILS
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSG 226
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 305 bits (780), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 223/337 (66%), Gaps = 4/337 (1%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE-N 70
W M++GYA+ GD++NA ALFE M E++V SW ++A Q EA++LFRRM E +
Sbjct: 196 WTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPS 255
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
++P+E+ ++ LSACAQ G ++L + IH + + L++ V ++N+L+D+Y K G + +A
Sbjct: 256 IRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEAS 315
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARV---KPNEITFIAILSACC 187
VF+ KS+ W +MI ALHG EA+ +F M + + KP+ ITFI +L+AC
Sbjct: 316 SVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACT 375
Query: 188 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIW 247
H GLV GR YF++M +R+GIEP+IE YGC+IDLLGRAG EA +++ M +A+ AIW
Sbjct: 376 HGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIW 435
Query: 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307
GSLL A I+G ++L E A+++L+ L P+N G A+++N+Y +G W E+ + RK+++
Sbjct: 436 GSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQ 495
Query: 308 GVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQIL 344
K PG S IE+ VH+F + D SHP+ + +Y IL
Sbjct: 496 NAYKPPGWSRIEIDNEVHQFYSLDKSHPETEEIYMIL 532
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 127/289 (43%), Gaps = 38/289 (13%)
Query: 21 KVGDLNNARALFELMTEKNVISWTTLIAGYAQMD--QPNEAITLFRRMQVENV-KPDEIA 77
++ +L+ AR +F+ + N + ++ Y+ + A + FR M +V +P+
Sbjct: 69 RLCNLSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFI 128
Query: 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS-GKIGKALQVFENM 136
L + L + +H ++ + G + V + AL+ YA S I A Q+F+ M
Sbjct: 129 YPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEM 188
Query: 137 KNKSVITWTTMIAGLA-------------------------------LHGLGREALDMFS 165
++V++WT M++G A +GL EA+ +F
Sbjct: 189 SERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFR 248
Query: 166 RM-ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 224
RM ++PNE+T + +LSAC G ++L + + R + + ++DL G+
Sbjct: 249 RMINEPSIRPNEVTVVCVLSACAQTGTLQLAKG-IHAFAYRRDLSSDVFVSNSLVDLYGK 307
Query: 225 AGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKL 273
G L+EA + +M + + W S++ ++G E + ++KL
Sbjct: 308 CGNLEEASSVF-KMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKL 355
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 301 bits (771), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 226/344 (65%), Gaps = 1/344 (0%)
Query: 19 YAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 78
YAK G +N A +FE +++++++SW ++I AQ D P+ AI +FR+M V + D +++
Sbjct: 486 YAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSI 545
Query: 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 138
AALSACA L + G+ IH ++ ++ L + V + LIDMYAK G + A+ VF+ MK
Sbjct: 546 SAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE 605
Query: 139 KSVITWTTMIAGLALHGLGREALDMFSRM-ERARVKPNEITFIAILSACCHVGLVELGRR 197
K++++W ++IA HG +++L +F M E++ ++P++ITF+ I+S+CCHVG V+ G R
Sbjct: 606 KNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVR 665
Query: 198 YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY 257
+F M YGI+P+ E Y C++DL GRAG L EA + ++ MPF +A +WG+LL A ++
Sbjct: 666 FFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLH 725
Query: 258 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSY 317
+VEL E A L+ L+P NSG Y ++SN +A W K+R +M++ V+K+PG S+
Sbjct: 726 KNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSW 785
Query: 318 IEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEF 361
IE++KR H FV+GD +HP+ +Y +L + G+++ ++ +
Sbjct: 786 IEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIPQPY 829
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 126/240 (52%), Gaps = 2/240 (0%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N++++ Y+K G ++A LF +M+ + ++W +I+GY Q E++T F M V
Sbjct: 278 NSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVL 337
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
PD I + L + ++ +E + IH YI ++ ++ + L +ALID Y K + A +
Sbjct: 338 PDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNI 397
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F + V+ +T MI+G +GL ++L+MF + + ++ PNEIT ++IL + +
Sbjct: 398 FSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLAL 457
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
+LGR + + G + + +ID+ + G + A ++ R+ + + W S++
Sbjct: 458 KLGRELHGFIIKK-GFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMIT 515
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 131/260 (50%), Gaps = 2/260 (0%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
+ ++ Y K ++ A+ +F +V+ +T +I+GY +++ +FR + +
Sbjct: 379 SALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKIS 438
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
P+EI +++ L L A++LG +H +I + G + + A+IDMYAK G++ A ++
Sbjct: 439 PNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEI 498
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
FE + + +++W +MI A A+D+F +M + + + ++ A LSAC ++
Sbjct: 499 FERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSE 558
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
G+ M ++ + + +ID+ + G L+ A + + M E N W S++A
Sbjct: 559 SFGKAIHGFMI-KHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNSIIA 616
Query: 253 ASNIYGDVELGECALQHLIK 272
A +G ++ C +++
Sbjct: 617 ACGNHGKLKDSLCLFHEMVE 636
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 90/173 (52%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
++++ Y + G ++ LF+ + +K+ + W ++ GYA+ + I F M+++ +
Sbjct: 177 SSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQIS 236
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
P+ + LS CA ++LG +H + G++ + N+L+ MY+K G+ A ++
Sbjct: 237 PNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKL 296
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 185
F M +TW MI+G GL E+L F M + V P+ ITF ++L +
Sbjct: 297 FRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPS 349
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 107/236 (45%), Gaps = 4/236 (1%)
Query: 19 YAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI 76
YA G ++ +F + ++ W ++I+ + + N+A+ + +M V PD
Sbjct: 80 YAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVS 139
Query: 77 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENM 136
+ AC L + +++ + + G++ + ++LI Y + GKI ++F+ +
Sbjct: 140 TFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV 199
Query: 137 KNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 196
K + W M+ G A G + FS M ++ PN +TF +LS C L++LG
Sbjct: 200 LQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGV 259
Query: 197 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
+ ++ G++ + ++ + + G +A KL R M A+ W +++
Sbjct: 260 QLHGLVVVS-GVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMS-RADTVTWNCMIS 313
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 8/187 (4%)
Query: 68 VENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127
+E P +++L L AC+ + G+ +H ++ ++ + ++ MYA G
Sbjct: 30 LEETIPRRLSLL--LQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFS 87
Query: 128 KALQVFE--NMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 185
++F +++ S+ W ++I+ +GL +AL + +M V P+ TF ++ A
Sbjct: 88 DCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKA 147
Query: 186 CCHVGLVEL-GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA 244
C V L G + + S G++ +I G + KL R+ + +
Sbjct: 148 C--VALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV-LQKDC 204
Query: 245 AIWGSLL 251
IW +L
Sbjct: 205 VIWNVML 211
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 299 bits (766), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 148/347 (42%), Positives = 216/347 (62%), Gaps = 1/347 (0%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N ++ GY +G+L A +LF M K++ISWTT+I GY+Q + EAI +F +M E +
Sbjct: 225 NCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGII 284
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
PDE+ M +SACA LG +E+G+ +H Y Q G V + +AL+DMY+K G + +AL V
Sbjct: 285 PDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLV 344
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F N+ K++ W ++I GLA HG +EAL MF++ME VKPN +TF+++ +AC H GLV
Sbjct: 345 FFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLV 404
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
+ GRR + M Y I +E YG M+ L +AG + EA +L+ M FE NA IWG+LL
Sbjct: 405 DEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLD 464
Query: 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 312
I+ ++ + E A L+ LEP NSG Y +L ++YA RW + +IR MR++G++K+
Sbjct: 465 GCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKI 524
Query: 313 -PGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQ 358
PG S I + KR H F A D SH D + +L +I QM A ++Q
Sbjct: 525 CPGTSSIRIDKRDHLFAAADKSHSASDEVCLLLDEIYDQMGLAGYVQ 571
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 122/265 (46%), Gaps = 44/265 (16%)
Query: 10 KFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
K T++ Y+ G + AR +F+ M E++ I+WTT+++ Y ++ + A +L +M +
Sbjct: 160 KIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEK 219
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129
N A S C LI+ Y G + +A
Sbjct: 220 N---------EATSNC------------------------------LINGYMGLGNLEQA 240
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
+F M K +I+WTTMI G + + REA+ +F +M + P+E+T ++SAC H+
Sbjct: 241 ESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHL 300
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249
G++E+G+ ++ + G + ++D+ + G L+ A + +P + N W S
Sbjct: 301 GVLEIGKE-VHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLP-KKNLFCWNS 358
Query: 250 LLAASNIYGDVELGECALQHLIKLE 274
++ +G + AL+ K+E
Sbjct: 359 IIEGLAAHG---FAQEALKMFAKME 380
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 10/195 (5%)
Query: 10 KFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
+ N + L+ A + M E NV + L G+ P ++ L+ RM +
Sbjct: 61 RLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRD 120
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129
+V P + + A + A GE + +I ++G V + LID Y+ +G+I +A
Sbjct: 121 SVSPSSYTYSSLVKASS--FASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREA 178
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS--RMERARVKPNEITFIAILSACC 187
+VF+ M + I WTTM++ R LDM S + + NE T +++
Sbjct: 179 RKVFDEMPERDDIAWTTMVSAY------RRVLDMDSANSLANQMSEKNEATSNCLINGYM 232
Query: 188 HVGLVELGRRYFNIM 202
+G +E FN M
Sbjct: 233 GLGNLEQAESLFNQM 247
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 105 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMF 164
LN L N I ++ A+ M+ +V + + G +L+++
Sbjct: 55 SLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELY 114
Query: 165 SRMERARVKPNEITFIAILSACCHVGLVELGRRY-FNIMKSRYGIEPKIEQYGCMIDLLG 223
RM R V P+ T+ +++ A G +I K +G KI+ +ID
Sbjct: 115 VRMLRDSVSPSSYTYSSLVKASSFAS--RFGESLQAHIWKFGFGFHVKIQT--TLIDFYS 170
Query: 224 RAGYLQEAEKLLRRMPFEANAAIWGSLLAA 253
G ++EA K+ MP E + W ++++A
Sbjct: 171 ATGRIREARKVFDEMP-ERDDIAWTTMVSA 199
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 299 bits (765), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 215/348 (61%), Gaps = 1/348 (0%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
+++V Y K ++A+ +F+ M +NV++WT LIAGY Q ++ + +F M +V
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA 303
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
P+E + + LSACA +GA+ G +H Y+ + + LID+Y K G + +A+ V
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILV 363
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
FE + K+V TWT MI G A HG R+A D+F M + V PNE+TF+A+LSAC H GLV
Sbjct: 364 FERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLV 423
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
E GRR F MK R+ +EPK + Y CM+DL GR G L+EA+ L+ RMP E +WG+L
Sbjct: 424 EEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFG 483
Query: 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 312
+ ++ D ELG+ A +IKL+P +SG Y +L+N+Y+ W+E ++RK M+D V K
Sbjct: 484 SCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKS 543
Query: 313 PGCSYIEVSKRVHEFVAGDTSHP-DFDRLYQILCKINGQMKFAEHLQN 359
PG S+IEV ++ EF+A D P + D LY+ L + QM+ + L++
Sbjct: 544 PGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTVGVQMRLPDELED 591
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 131/247 (53%), Gaps = 3/247 (1%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N++++GY+ G + A LF+ +K+V++WT +I G+ + +EA+ F M+ V
Sbjct: 142 NSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVA 201
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHN-YIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+E+ +++ L A ++ V G +H Y+E + V + ++L+DMY K A +
Sbjct: 202 ANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQK 261
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VF+ M +++V+TWT +IAG + + +F M ++ V PNE T ++LSAC HVG
Sbjct: 262 VFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGA 321
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
+ GRR M + IE +IDL + G L+EA + R+ E N W +++
Sbjct: 322 LHRGRRVHCYM-IKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERL-HEKNVYTWTAMI 379
Query: 252 AASNIYG 258
+G
Sbjct: 380 NGFAAHG 386
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 107/228 (46%), Gaps = 4/228 (1%)
Query: 28 ARALFELMTEKNVISWTTLIAGYAQMDQPNEAITL--FRRMQVENVKPDEIAMLAALSAC 85
AR L + ++ W +LI ++ N ++ +R M+ V P L A
Sbjct: 55 ARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAV 114
Query: 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWT 145
+L ++ H +I ++GL++ + N+LI Y+ SG A ++F+ ++K V+TWT
Sbjct: 115 FKLRDSNPFQF-HAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWT 173
Query: 146 TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 205
MI G +G EA+ F M++ V NE+T +++L A V V GR +
Sbjct: 174 AMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLET 233
Query: 206 YGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAA 253
++ + ++D+ G+ +A+K+ MP N W +L+A
Sbjct: 234 GRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP-SRNVVTWTALIAG 280
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 298 bits (764), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 224/346 (64%)
Query: 14 TMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP 73
T++ Y + D+++AR +F+ + E V+ + +I GYA+ ++PNEA++LFR MQ + +KP
Sbjct: 169 TLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKP 228
Query: 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVF 133
+EI +L+ LS+CA LG+++LG+WIH Y +++ V +N ALIDM+AK G + A+ +F
Sbjct: 229 NEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIF 288
Query: 134 ENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 193
E M+ K W+ MI A HG +++ MF RM V+P+EITF+ +L+AC H G VE
Sbjct: 289 EKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVE 348
Query: 194 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAA 253
GR+YF+ M S++GI P I+ YG M+DLL RAG L++A + + ++P +W LLAA
Sbjct: 349 EGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAA 408
Query: 254 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMP 313
+ + +++L E + + +L+ + G+Y ILSN+YA +W +RKVM+D K+P
Sbjct: 409 CSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVP 468
Query: 314 GCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQN 359
GCS IEV+ VHEF +GD +L++ L ++ ++K + ++ +
Sbjct: 469 GCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPD 514
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 121/234 (51%), Gaps = 2/234 (0%)
Query: 28 ARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87
AR LFE M+E +++ + ++ GY++ P E +LF + + + PD + L ACA
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTM 147
A+E G +H + GL+ V + LI+MY + + A VF+ + V+ + M
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 148 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG 207
I G A EAL +F M+ +KPNEIT +++LS+C +G ++LG ++ + ++
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHS 260
Query: 208 IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVE 261
++ +ID+ + G L +A + +M ++ A W +++ A +G E
Sbjct: 261 FCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQA-WSAMIVAYANHGKAE 313
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 65/146 (44%), Gaps = 33/146 (22%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
W+ M+ YA G + +++ +F RM+ ENV
Sbjct: 299 WSAMIVAYANHG-------------------------------KAEKSMLMFERMRSENV 327
Query: 72 KPDEIAMLAALSACAQLGAVELG-EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
+PDEI L L+AC+ G VE G ++ + ++G+ + +++D+ +++G + A
Sbjct: 328 QPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAY 387
Query: 131 QVFENMK-NKSVITWTTMIAGLALHG 155
+ + + + + + W ++A + H
Sbjct: 388 EFIDKLPISPTPMLWRILLAACSSHN 413
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 298 bits (762), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 141/321 (43%), Positives = 210/321 (65%), Gaps = 1/321 (0%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN M+AGY K G+L +A+ +F M ++ +SW+T+I G A NE+ FR +Q +
Sbjct: 206 WNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGM 265
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
P+E+++ LSAC+Q G+ E G+ +H ++E+ G + IV +NNALIDMY++ G + A
Sbjct: 266 SPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARL 325
Query: 132 VFENMKNK-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
VFE M+ K +++WT+MIAGLA+HG G EA+ +F+ M V P+ I+FI++L AC H G
Sbjct: 326 VFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAG 385
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
L+E G YF+ MK Y IEP+IE YGCM+DL GR+G LQ+A + +MP A +W +L
Sbjct: 386 LIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTL 445
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
L A + +G++EL E Q L +L+P+NSG+ +LSN YA G+W + IRK M +K
Sbjct: 446 LGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIK 505
Query: 311 KMPGCSYIEVSKRVHEFVAGD 331
K S +EV K +++F AG+
Sbjct: 506 KTTAWSLVEVGKTMYKFTAGE 526
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 125/296 (42%), Gaps = 61/296 (20%)
Query: 12 WNTMVAGYAKVGDLNNARALF-ELMT---------------------------------- 36
+NT+V GY++ + +N+ A+F E+M
Sbjct: 73 FNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQA 132
Query: 37 -----EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ---- 87
E ++ TTLI Y A +F M +P+ +A A ++AC +
Sbjct: 133 LKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMH----QPNLVAWNAVITACFRGNDV 188
Query: 88 LGAVELGE--WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWT 145
GA E+ + + N+ N ++ Y K+G++ A ++F M ++ ++W+
Sbjct: 189 AGAREIFDKMLVRNHTSW----------NVMLAGYIKAGELESAKRIFSEMPHRDDVSWS 238
Query: 146 TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 205
TMI G+A +G E+ F ++RA + PNE++ +LSAC G E G+ ++ +
Sbjct: 239 TMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVE-K 297
Query: 206 YGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVE 261
G + +ID+ R G + A + M + W S++A ++G E
Sbjct: 298 AGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGE 353
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 295 bits (754), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 147/341 (43%), Positives = 216/341 (63%), Gaps = 6/341 (1%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
+ ++ +AK+G+ +A ++F+ M + I W ++I G+AQ + + A+ LF+RM+
Sbjct: 198 SALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI 257
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
++ + + L AC L +ELG H +I +Y + I LNNAL+DMY K G + AL+V
Sbjct: 258 AEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLI--LNNALVDMYCKCGSLEDALRV 315
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F MK + VITW+TMI+GLA +G +EAL +F RM+ + KPN IT + +L AC H GL+
Sbjct: 316 FNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLL 375
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
E G YF MK YGI+P E YGCMIDLLG+AG L +A KLL M E +A W +LL
Sbjct: 376 EDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLG 435
Query: 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 312
A + ++ L E A + +I L+P ++G Y +LSNIYA +W+ +IR MRD G+KK
Sbjct: 436 ACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKE 495
Query: 313 PGCSYIEVSKRVHEFVAGDTSHPDF----DRLYQILCKING 349
PGCS+IEV+K++H F+ GD SHP +L Q++ ++ G
Sbjct: 496 PGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTG 536
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 130/280 (46%), Gaps = 45/280 (16%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N ++ Y K LN+A LF+ M ++NVISWTT+I+ Y++ +A+ L M +NV+
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
P+ + L +C + V + +H I + GL + V + +ALID++AK G+ AL V
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F+ M I W ++I G A + AL++F RM+RA + T ++L AC + L+
Sbjct: 217 FDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALL 276
Query: 193 ELGR---------------------------------RYFNIMKSRYGIEPKIEQYGCMI 219
ELG R FN MK R + + MI
Sbjct: 277 ELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKER-----DVITWSTMI 331
Query: 220 DLLGRAGYLQEAEKLLRRMPFEANA----AIWGSLLAASN 255
L + GY QEA KL RM I G L A S+
Sbjct: 332 SGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSH 371
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 8/213 (3%)
Query: 52 QMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVP 111
Q D P A+ +Q + D + C AV G I ++ G ++
Sbjct: 39 QRDLP-RAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMF 97
Query: 112 LNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERAR 171
L N LI+MY K + A Q+F+ M ++VI+WTTMI+ + + ++AL++ M R
Sbjct: 98 LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDN 157
Query: 172 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 231
V+PN T+ ++L +C G+ ++ + I+K G+E + +ID+ + G ++A
Sbjct: 158 VRPNVYTYSSVLRSC--NGMSDVRMLHCGIIKE--GLESDVFVRSALIDVFAKLGEPEDA 213
Query: 232 EKLLRRMPFEANAAIWGSLLA--ASNIYGDVEL 262
+ M +A +W S++ A N DV L
Sbjct: 214 LSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVAL 245
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 294 bits (753), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 142/352 (40%), Positives = 219/352 (62%), Gaps = 5/352 (1%)
Query: 10 KFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
K W +MV GY G ++ AR LFE K+V+ WT ++ GY Q ++ +EA+ LFR MQ
Sbjct: 214 KCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTA 273
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129
++PD +++ L+ CAQ GA+E G+WIH YI + + + AL+DMYAK G I A
Sbjct: 274 GIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETA 333
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
L+VF +K + +WT++I GLA++G+ ALD++ ME V+ + ITF+A+L+AC H
Sbjct: 334 LEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHG 393
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEAN---AAI 246
G V GR+ F+ M R+ ++PK E C+IDLL RAG L EAE+L+ +M E++ +
Sbjct: 394 GFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPV 453
Query: 247 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306
+ SLL+A+ YG+V++ E + L K+E +S + +L+++YA RW + +R+ M+D
Sbjct: 454 YCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKD 513
Query: 307 MGVKKMPGCSYIEVSKRVHEFVAGDT--SHPDFDRLYQILCKINGQMKFAEH 356
+G++K PGCS IE+ HEF+ GD SHP D + +L + M EH
Sbjct: 514 LGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPKMDEINSMLHQTTNLMLDLEH 565
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 144/275 (52%), Gaps = 43/275 (15%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM-QVENV 71
N+++ YA +G + +F+ M +++V+SW LI+ Y + +AI +F+RM Q N+
Sbjct: 85 NSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNL 144
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNY-IEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
K DE +++ LSAC+ L +E+GE I+ + + ++ ++ V + NAL+DM+ K G + KA
Sbjct: 145 KFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMS--VRIGNALVDMFCKCGCLDKAR 202
Query: 131 QVFENMKNKSVITWTTMIAGLALHG-----------------------------LGR--E 159
VF++M++K+V WT+M+ G G R E
Sbjct: 203 AVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDE 262
Query: 160 ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR---RYFNIMKSRYGIEPKIEQYG 216
AL++F M+ A ++P+ +++L+ C G +E G+ Y N ++R ++ +
Sbjct: 263 ALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIN--ENRVTVDKVVGT-- 318
Query: 217 CMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
++D+ + G ++ A ++ + E + A W SL+
Sbjct: 319 ALVDMYAKCGCIETALEVFYEIK-ERDTASWTSLI 352
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 147/309 (47%), Gaps = 22/309 (7%)
Query: 34 LMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVEL 93
L+ +++ + ++ A + + LF ++ + + PD + L + +L V
Sbjct: 5 LLQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIE 64
Query: 94 GEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLAL 153
GE +H Y + GL ++N+L+ MYA GKI +VF+ M + V++W +I+
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 154 HGLGREALDMFSRM-ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI 212
+G +A+ +F RM + + +K +E T ++ LSAC + +E+G R + + + + + +I
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRI 184
Query: 213 EQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGEC-ALQHLI 271
++D+ + G L +A + M + N W S+ ++G V G + L
Sbjct: 185 GN--ALVDMFCKCGCLDKARAVFDSMR-DKNVKCWTSM-----VFGYVSTGRIDEARVLF 236
Query: 272 KLEP-HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK--------MPGCSY---IE 319
+ P + + + N Y R++E+ ++ + M+ G++ + GC+ +E
Sbjct: 237 ERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALE 296
Query: 320 VSKRVHEFV 328
K +H ++
Sbjct: 297 QGKWIHGYI 305
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 293 bits (751), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 148/344 (43%), Positives = 215/344 (62%), Gaps = 4/344 (1%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
NT ++ Y+K D +AR LF++MT + +SWT +I+GYA+ +EA+ LF M K
Sbjct: 295 NTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEK 354
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI-VPLNNALIDMYAKSGKIGKALQ 131
PD + +L+ +S C + G++E G+WI + YG V + NALIDMY+K G I +A
Sbjct: 355 PDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARD 414
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
+F+N K+V+TWTTMIAG AL+G+ EAL +FS+M KPN ITF+A+L AC H G
Sbjct: 415 IFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGS 474
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
+E G YF+IMK Y I P ++ Y CM+DLLGR G L+EA +L+R M + +A IWG+LL
Sbjct: 475 LEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALL 534
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
A I+ +V++ E A + L LEP + Y ++NIYA G W+ +IR +M+ +KK
Sbjct: 535 NACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKK 594
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAE 355
PG S I+V+ + H F G+ H + + +Y L NG FA+
Sbjct: 595 YPGESVIQVNGKNHSFTVGEHGHVENEVIYFTL---NGLSLFAK 635
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 125/258 (48%), Gaps = 23/258 (8%)
Query: 13 NTMVAGYAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
NT ++ Y K GDL++A+ +FE + ++ V+SW ++ Y+ + +A L+ M E
Sbjct: 192 NTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREE 251
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
KPD + ++C + G IH++ G + + N I MY+KS A
Sbjct: 252 FKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSAR 311
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
+F+ M +++ ++WT MI+G A G EAL +F M ++ KP+ +T ++++S C G
Sbjct: 312 LLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFG 371
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGC----------MIDLLGRAGYLQEAEKLLRRMPF 240
+E G+ I+ + + YGC +ID+ + G + EA + P
Sbjct: 372 SLETGK----------WIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTP- 420
Query: 241 EANAAIWGSLLAASNIYG 258
E W +++A + G
Sbjct: 421 EKTVVTWTTMIAGYALNG 438
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 125/270 (46%), Gaps = 10/270 (3%)
Query: 11 FWNTMVAG------YAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFR 64
FW+ + G + K ++ A +FE M E++ +W +++G+ Q ++A +LFR
Sbjct: 83 FWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFR 142
Query: 65 RMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124
M++ + PD + ++ + + + +++L E +H + G++ V + N I Y K G
Sbjct: 143 EMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCG 202
Query: 125 KIGKALQVFENMK--NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI 182
+ A VFE + +++V++W +M ++ G +A ++ M R KP+ TFI +
Sbjct: 203 DLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINL 262
Query: 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA 242
++C + + G R + G + IE I + ++ A +LL +
Sbjct: 263 AASCQNPETLTQG-RLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSA-RLLFDIMTSR 320
Query: 243 NAAIWGSLLAASNIYGDVELGECALQHLIK 272
W +++ GD++ +IK
Sbjct: 321 TCVSWTVMISGYAEKGDMDEALALFHAMIK 350
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 103/237 (43%), Gaps = 12/237 (5%)
Query: 29 RALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88
R L+ + +V +W I + P E++ LFR M+ +P+ ACA+L
Sbjct: 6 RRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARL 65
Query: 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMI 148
V E +H ++ + + V + A +DM+ K + A +VFE M + TW M+
Sbjct: 66 ADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAML 125
Query: 149 AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGI 208
+G G +A +F M + P+ +T + ++ + ++L + + R G+
Sbjct: 126 SGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKL-LEAMHAVGIRLGV 184
Query: 209 EPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA------NAAIWGSLLAASNIYGD 259
+ ++ I G+ G L A ++ FEA W S+ A +++G+
Sbjct: 185 DVQVTVANTWISTYGKCGDLDSA-----KLVFEAIDRGDRTVVSWNSMFKAYSVFGE 236
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 292 bits (747), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/360 (40%), Positives = 234/360 (65%), Gaps = 5/360 (1%)
Query: 13 NTMVAGYAKVGD--LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
NT++ YAK G+ + AR +F+ + +K+ +S+ ++++ YAQ NEA +FRR+ V+N
Sbjct: 222 NTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL-VKN 280
Query: 71 --VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK 128
V + I + L A + GA+ +G+ IH+ + + GL V + ++IDMY K G++
Sbjct: 281 KVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVET 340
Query: 129 ALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH 188
A + F+ MKNK+V +WT MIAG +HG +AL++F M + V+PN ITF+++L+AC H
Sbjct: 341 ARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSH 400
Query: 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWG 248
GL G R+FN MK R+G+EP +E YGCM+DLLGRAG+LQ+A L++RM + ++ IW
Sbjct: 401 AGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWS 460
Query: 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308
SLLAA I+ +VEL E ++ L +L+ N G Y +LS+IYA GRW + ++R +M++ G
Sbjct: 461 SLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRG 520
Query: 309 VKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESD 368
+ K PG S +E++ VH F+ GD HP +++Y+ L ++N ++ A ++ N S + D
Sbjct: 521 LVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVD 580
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 142/255 (55%), Gaps = 11/255 (4%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
+ ++ Y+ G L +AR +F+ + ++N++SWT++I GY +A++LF+ + V+
Sbjct: 115 SALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDEND 174
Query: 73 PDE------IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126
D+ + +++ +SAC+++ A L E IH+++ + G + V + N L+D YAK G+
Sbjct: 175 DDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEG 234
Query: 127 GKAL--QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAIL 183
G A+ ++F+ + +K +++ ++++ A G+ EA ++F R+ + +V N IT +L
Sbjct: 235 GVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVL 294
Query: 184 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEAN 243
A H G + +G+ + + R G+E + +ID+ + G ++ A K RM N
Sbjct: 295 LAVSHSGALRIGKCIHDQV-IRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKN 352
Query: 244 AAIWGSLLAASNIYG 258
W +++A ++G
Sbjct: 353 VRSWTAMIAGYGMHG 367
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/353 (22%), Positives = 157/353 (44%), Gaps = 55/353 (15%)
Query: 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEK-NVISWTTLIAGYAQMDQPNEAIT 61
++SRLL+ +T + N LF +K +V SW ++IA A+ EA+
Sbjct: 12 SVSRLLHTERHT---------ERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALL 62
Query: 62 LFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121
F M+ ++ P + A+ AC+ L + G+ H +G + + +++ALI MY+
Sbjct: 63 AFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYS 122
Query: 122 KSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF-- 179
GK+ A +VF+ + +++++WT+MI G L+G +A+ +F + ++ F
Sbjct: 123 TCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLD 182
Query: 180 ----IAILSACCHV---GLVE-----LGRRYF-------NIMKSRYG------------- 207
++++SAC V GL E + +R F N + Y
Sbjct: 183 SMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKI 242
Query: 208 ----IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAASNIYGD 259
++ Y ++ + ++G EA ++ RR+ NA ++L A + G
Sbjct: 243 FDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGA 302
Query: 260 VELGECALQHLIK--LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
+ +G+C +I+ LE +I+ ++Y GR + K M++ V+
Sbjct: 303 LRIGKCIHDQVIRMGLEDDVIVGTSII-DMYCKCGRVETARKAFDRMKNKNVR 354
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 291 bits (746), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 142/350 (40%), Positives = 211/350 (60%), Gaps = 6/350 (1%)
Query: 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITL 62
T++ LL NT V D+ F M +K+++SW +I Y + P EA+ L
Sbjct: 243 TMASLLPAVSNTTTENVMYVKDM------FFKMGKKSLVSWNVMIGVYMKNAMPVEAVEL 296
Query: 63 FRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122
+ RM+ + +PD +++ + L AC A+ LG+ IH YIE+ L + L NALIDMYAK
Sbjct: 297 YSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAK 356
Query: 123 SGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI 182
G + KA VFENMK++ V++WT MI+ G G +A+ +FS+++ + + P+ I F+
Sbjct: 357 CGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTT 416
Query: 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA 242
L+AC H GL+E GR F +M Y I P++E CM+DLLGRAG ++EA + ++ M E
Sbjct: 417 LAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEP 476
Query: 243 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 302
N +WG+LL A ++ D ++G A L +L P SG Y +LSNIYA GRW E IR
Sbjct: 477 NERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRN 536
Query: 303 VMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
+M+ G+KK PG S +EV++ +H F+ GD SHP D +Y+ L + +MK
Sbjct: 537 IMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMK 586
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 119/253 (47%), Gaps = 6/253 (2%)
Query: 15 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 74
++ YA + D+ +AR +F+ + E+NVI +I Y E + +F M NV+PD
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139
Query: 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 134
L AC+ G + +G IH + GL++ + + N L+ MY K G + +A V +
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199
Query: 135 NMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 194
M + V++W +++ G A + +AL++ ME ++ + T ++L A + +
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259
Query: 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP---FEANAAIWGSLL 251
Y M + G + + + MI + + EA +L RM FE +A S+L
Sbjct: 260 --MYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVL 316
Query: 252 AASNIYGDVELGE 264
A + LG+
Sbjct: 317 PACGDTSALSLGK 329
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 35/246 (14%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N +V+ Y K G L+ AR + + M+ ++V+SW +L+ GYAQ + ++A+ + R M+ +
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
D M + L A + NT + DM+ K GK
Sbjct: 239 HDAGTMASLLPAVS--------------------NTTTENVMYVKDMFFKMGK------- 271
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
KS+++W MI + + EA++++SRME +P+ ++ ++L AC +
Sbjct: 272 ------KSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSAL 325
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
LG++ ++ R + P + +ID+ + G L++A + M + W ++++
Sbjct: 326 SLGKKIHGYIE-RKKLIPNLLLENALIDMYAKCGCLEKARDVFENMK-SRDVVSWTAMIS 383
Query: 253 ASNIYG 258
A G
Sbjct: 384 AYGFSG 389
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 21/235 (8%)
Query: 52 QMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVP 111
++DQ + T+F QV + PD + +H+ I L
Sbjct: 32 ELDQKSPQETVFLLGQVLDTYPD----------------IRTLRTVHSRIILEDLRCNSS 75
Query: 112 LNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERAR 171
L L+ YA + A +VF+ + ++VI MI +G E + +F M
Sbjct: 76 LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135
Query: 172 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 231
V+P+ TF +L AC G + +GR+ ++ G+ + ++ + G+ G+L EA
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHG-SATKVGLSSTLFVGNGLVSMYGKCGFLSEA 194
Query: 232 EKLLRRMPFEANAAIWGSLLA--ASNIYGDVELGECALQHLIKLEPHNSGNYAIL 284
+L M + W SL+ A N D L C +K+ H++G A L
Sbjct: 195 RLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS-HDAGTMASL 247
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 290 bits (743), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 141/313 (45%), Positives = 206/313 (65%), Gaps = 6/313 (1%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN M+ G K ++++AR LF+ TEK+V++W +I+GY P EA+ +F+ M+
Sbjct: 212 WNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGE 271
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYI-EQYGLNTIV----PLNNALIDMYAKSGKI 126
PD + +L+ LSACA LG +E G+ +H YI E +++ + P+ NALIDMYAK G I
Sbjct: 272 HPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSI 331
Query: 127 GKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186
+A++VF +K++ + TW T+I GLALH +++MF M+R +V PNE+TFI ++ AC
Sbjct: 332 DRAIEVFRGVKDRDLSTWNTLIVGLALHH-AEGSIEMFEEMQRLKVWPNEVTFIGVILAC 390
Query: 187 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAI 246
H G V+ GR+YF++M+ Y IEP I+ YGCM+D+LGRAG L+EA + M E NA +
Sbjct: 391 SHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIV 450
Query: 247 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306
W +LL A IYG+VELG+ A + L+ + SG+Y +LSNIYA G+W+ K+RK+ D
Sbjct: 451 WRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDD 510
Query: 307 MGVKKMPGCSYIE 319
VKK G S IE
Sbjct: 511 TRVKKPTGVSLIE 523
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 137/307 (44%), Gaps = 60/307 (19%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N ++ +A GDL A LF+ + + ++W+++ +GYA+ + +EA+ LF M +
Sbjct: 151 NALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK--- 207
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
D++A ++ C K ++ A ++
Sbjct: 208 -DQVAWNVMITGC-----------------------------------LKCKEMDSAREL 231
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F+ K V+TW MI+G G +EAL +F M A P+ +T +++LSAC +G +
Sbjct: 232 FDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDL 291
Query: 193 ELGRRYFNIMKSRYGIEPKI----EQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWG 248
E G+R + + I + +ID+ + G + A ++ R + + + + W
Sbjct: 292 ETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVK-DRDLSTWN 350
Query: 249 SL---LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL-----GRWNESGKI 300
+L LA + G +E+ E +Q L K+ P+ ++ I IL GR +E K
Sbjct: 351 TLIVGLALHHAEGSIEMFE-EMQRL-KVWPNE------VTFIGVILACSHSGRVDEGRKY 402
Query: 301 RKVMRDM 307
+MRDM
Sbjct: 403 FSLMRDM 409
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 123/276 (44%), Gaps = 19/276 (6%)
Query: 23 GDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAAL 82
G L A LF+ + + +V ++ G AQ +P + ++L+ M+ V PD L
Sbjct: 60 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 119
Query: 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVI 142
AC++L G H + ++G + NALI +A G +G A ++F++ +
Sbjct: 120 KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 179
Query: 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIM 202
W++M +G A G EA+ +F M +++ + +++ C ++ R F+
Sbjct: 180 AWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAWNVMITGCLKCKEMDSARELFD-- 233
Query: 203 KSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPF---EANAAIWGSLLAASNIYGD 259
R+ E + + MI GY +EA + + M + SLL+A + GD
Sbjct: 234 --RF-TEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGD 290
Query: 260 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 295
+E G+ H+ LE ++ S+IY WN
Sbjct: 291 LETGK--RLHIYILE-----TASVSSSIYVGTPIWN 319
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 289 bits (740), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 224/340 (65%), Gaps = 12/340 (3%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQ-VE-- 69
NT++ Y+++G ++ A +F M ++++++W T+I GY + +A+ L +MQ +E
Sbjct: 444 NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERK 503
Query: 70 --------NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121
++KP+ I ++ L +CA L A+ G+ IH Y + L T V + +AL+DMYA
Sbjct: 504 VSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYA 563
Query: 122 KSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA 181
K G + + +VF+ + K+VITW +I +HG G+EA+D+ M VKPNE+TFI+
Sbjct: 564 KCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 623
Query: 182 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 241
+ +AC H G+V+ G R F +MK YG+EP + Y C++DLLGRAG ++EA +L+ MP +
Sbjct: 624 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 683
Query: 242 AN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI 300
N A W SLL AS I+ ++E+GE A Q+LI+LEP+ + +Y +L+NIY+ G W+++ ++
Sbjct: 684 FNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEV 743
Query: 301 RKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRL 340
R+ M++ GV+K PGCS+IE VH+FVAGD+SHP ++L
Sbjct: 744 RRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKL 783
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 128/259 (49%), Gaps = 14/259 (5%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQ-VENV 71
+ +V Y + + R +F+ M ++ + W +IAGY+Q + EA+ LF M+ +
Sbjct: 342 SALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGL 401
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+ M + AC + GA E IH ++ + GL+ + N L+DMY++ GKI A++
Sbjct: 402 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR 461
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRME-----------RARVKPNEITFI 180
+F M+++ ++TW TMI G +AL + +M+ R +KPN IT +
Sbjct: 462 IFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLM 521
Query: 181 AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPF 240
IL +C + + G+ + + + + ++D+ + G LQ + K+ ++P
Sbjct: 522 TILPSCAALSALAKGKE-IHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP- 579
Query: 241 EANAAIWGSLLAASNIYGD 259
+ N W ++ A ++G+
Sbjct: 580 QKNVITWNVIIMAYGMHGN 598
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 121/243 (49%), Gaps = 4/243 (1%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
NT+VA Y K+G L +++ L +++++W T+++ Q +Q EA+ R M +E V+
Sbjct: 240 NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVE 299
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYG-LNTIVPLNNALIDMYAKSGKIGKALQ 131
PDE + + L AC+ L + G+ +H Y + G L+ + +AL+DMY ++ +
Sbjct: 300 PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRR 359
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER-ARVKPNEITFIAILSACCHVG 190
VF+ M ++ + W MIAG + + +EAL +F ME A + N T ++ AC G
Sbjct: 360 VFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
+ R G++ ++D+ R G + A ++ +M + + W ++
Sbjct: 420 AFSRKEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTM 477
Query: 251 LAA 253
+
Sbjct: 478 ITG 480
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 102/188 (54%), Gaps = 6/188 (3%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
NT+V Y K GD +F+ ++E+N +SW +LI+ ++ A+ FR M ENV+
Sbjct: 137 NTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE 196
Query: 73 PDEIAMLAALSACAQLGAVE---LGEWIHNYIEQYG-LNTIVPLNNALIDMYAKSGKIGK 128
P +++ ++AC+ L E +G+ +H Y + G LN+ + N L+ MY K GK+
Sbjct: 197 PSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII--NTLVAMYGKLGKLAS 254
Query: 129 ALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH 188
+ + + + ++TW T+++ L + EAL+ M V+P+E T ++L AC H
Sbjct: 255 SKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSH 314
Query: 189 VGLVELGR 196
+ ++ G+
Sbjct: 315 LEMLRTGK 322
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Query: 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE 102
W L+ + + EA+ + M V +KPD A A L A A L +ELG+ IH ++
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 103 QYGLNT-IVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREAL 161
++G V + N L+++Y K G G +VF+ + ++ ++W ++I+ L AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 162 DMFSRMERARVKPNEITFIAILSACCHVGLVE 193
+ F M V+P+ T +++++AC ++ + E
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPE 216
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 137 KNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 196
+++S W ++ L REA+ + M +KP+ F A+L A + +ELG+
Sbjct: 58 QSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGK 117
Query: 197 R-YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAA 253
+ + ++ K YG++ + +++L + G K+ R+ E N W SL+++
Sbjct: 118 QIHAHVYKFGYGVD-SVTVANTLVNLYRKCGDFGAVYKVFDRIS-ERNQVSWNSLISS 173
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 288 bits (738), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 225/360 (62%), Gaps = 6/360 (1%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE-N 70
WN M+ GY + GD+ A LF+ M KNV SWTT+I+G++Q +EA+ +F M+ + +
Sbjct: 151 WNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKS 210
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
VKP+ I +++ L ACA LG +E+G + Y + G + + NA I+MY+K G I A
Sbjct: 211 VKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAK 270
Query: 131 QVFENMKN-KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
++FE + N +++ +W +MI LA HG EAL +F++M R KP+ +TF+ +L AC H
Sbjct: 271 RLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHG 330
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249
G+V G+ F M+ + I PK+E YGCMIDLLGR G LQEA L++ MP + +A +WG+
Sbjct: 331 GMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGT 390
Query: 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309
LL A + +G+VE+ E A + L KLEP N GN I+SNIYA +W+ ++RK+M+ +
Sbjct: 391 LLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETM 450
Query: 310 KKMPGCSY-IEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESD 368
K G SY +EV VH+F D SHP +YQ+L +I +MK ++ F +L+ +
Sbjct: 451 TKAAGYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMKLE---KSRFDSLLQPE 507
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 41/273 (15%)
Query: 22 VGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP-------- 73
+ +L AR LF+ + LI Y QP+E+I L+ + + ++P
Sbjct: 29 IPNLVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFI 88
Query: 74 ---------------------------DEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 106
D ++A A+LGA+ + + + +
Sbjct: 89 FAASASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRD- 147
Query: 107 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSR 166
VP+ NA+I Y + G + A+++F++M K+V +WTT+I+G + +G EAL MF
Sbjct: 148 ---VPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLC 204
Query: 167 MERAR-VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 225
ME+ + VKPN IT +++L AC ++G +E+GRR + G I I++ +
Sbjct: 205 MEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYAREN-GFFDNIYVCNATIEMYSKC 263
Query: 226 GYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258
G + A++L + + N W S++ + +G
Sbjct: 264 GMIDVAKRLFEELGNQRNLCSWNSMIGSLATHG 296
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 288 bits (737), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 207/331 (62%), Gaps = 1/331 (0%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMT-EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
W M+ GY K + A A+F+ MT KN+++W +I+GY + +P + + LFR M E
Sbjct: 220 WTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEG 279
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
++P+ + +AL C++L A++LG IH + + L V +LI MY K G++G A
Sbjct: 280 IRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAW 339
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
++FE MK K V+ W MI+G A HG +AL +F M +++P+ ITF+A+L AC H G
Sbjct: 340 KLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAG 399
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
LV +G YF M Y +EP+ + Y CM+DLLGRAG L+EA KL+R MPF +AA++G+L
Sbjct: 400 LVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTL 459
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
L A ++ +VEL E A + L++L N+ Y L+NIYA RW + ++RK M++ V
Sbjct: 460 LGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVV 519
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLY 341
K+PG S+IE+ +VH F + D HP+ D ++
Sbjct: 520 KVPGYSWIEIRNKVHHFRSSDRIHPELDSIH 550
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 129/267 (48%), Gaps = 13/267 (4%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
+N M++ Y + + A++ F+ M K+ SW T+I GYA+ + +A LF M +N
Sbjct: 127 YNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKN- 185
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
E++ A +S + G +E ++ + + +V A+I Y K+ K+ A
Sbjct: 186 ---EVSWNAMISGYIECGDLEKAS---HFFKVAPVRGVVAW-TAMITGYMKAKKVELAEA 238
Query: 132 VFENMK-NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
+F++M NK+++TW MI+G + + L +F M ++PN + L C +
Sbjct: 239 MFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELS 298
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
++LGR+ I+ S+ + + +I + + G L +A KL M + + W ++
Sbjct: 299 ALQLGRQIHQIV-SKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWNAM 356
Query: 251 LAASNIYGDVELGECALQHLI--KLEP 275
++ +G+ + C + +I K+ P
Sbjct: 357 ISGYAQHGNADKALCLFREMIDNKIRP 383
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 107 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALH-GLGREALDMFS 165
+ I PLN +I +SG I AL+VF M+ K+ ITW +++ G++ EA +F
Sbjct: 59 DQIFPLNK-IIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFD 117
Query: 166 RMERARVKPNEITFIAILSACCHVGLV--ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 223
+ +P+ ++ +LS C+V V E + +F+ M + + MI
Sbjct: 118 EIP----EPDTFSYNIMLS--CYVRNVNFEKAQSFFDRMPFK-----DAASWNTMITGYA 166
Query: 224 RAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEP 275
R G +++A +L M E N W ++++ GD+E H K+ P
Sbjct: 167 RRGEMEKARELFYSM-MEKNEVSWNAMISGYIECGDLEKA----SHFFKVAP 213
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 288 bits (737), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 208/346 (60%), Gaps = 6/346 (1%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
+M++GYA AR +F M E+NV+SW LIAGY Q + EA++LF ++ E+V
Sbjct: 324 TSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVC 383
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN------TIVPLNNALIDMYAKSGKI 126
P + L ACA L + LG H ++ ++G + + N+LIDMY K G +
Sbjct: 384 PTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCV 443
Query: 127 GKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186
+ VF M + ++W MI G A +G G EAL++F M + KP+ IT I +LSAC
Sbjct: 444 EEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSAC 503
Query: 187 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAI 246
H G VE GR YF+ M +G+ P + Y CM+DLLGRAG+L+EA+ ++ MP + ++ I
Sbjct: 504 GHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVI 563
Query: 247 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306
WGSLLAA ++ ++ LG+ + L+++EP NSG Y +LSN+YA LG+W + +RK MR
Sbjct: 564 WGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRK 623
Query: 307 MGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
GV K PGCS+I++ H F+ D SHP +++ +L + +M+
Sbjct: 624 EGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 135/248 (54%), Gaps = 4/248 (1%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN++V G K+G L+ A +LF M E++ +W ++++G+AQ D+ EA+ F M E
Sbjct: 89 WNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGF 148
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+E + + LSAC+ L + G +H+ I + + V + +AL+DMY+K G + A +
Sbjct: 149 VLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQR 208
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VF+ M +++V++W ++I +G EALD+F M +RV+P+E+T +++SAC +
Sbjct: 209 VFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSA 268
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE----ANAAIW 247
+++G+ + + I +D+ + ++EA + MP + I
Sbjct: 269 IKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMIS 328
Query: 248 GSLLAASN 255
G +AAS
Sbjct: 329 GYAMAAST 336
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 148/289 (51%), Gaps = 40/289 (13%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
+ +V Y+K G++N+A+ +F+ M ++NV+SW +LI + Q EA+ +F+ M V+
Sbjct: 191 SALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVE 250
Query: 73 PDEIAMLAALSACAQLGAVELGEWIH-NYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
PDE+ + + +SACA L A+++G+ +H ++ L + L+NA +DMYAK +I +A
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARF 310
Query: 132 VFENMK-------------------------------NKSVITWTTMIAGLALHGLGREA 160
+F++M ++V++W +IAG +G EA
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370
Query: 161 LDMFSRMERARVKPNEITFIAILSACCHVGLVELG-RRYFNIMKSRY----GIEPKIEQY 215
L +F ++R V P +F IL AC + + LG + + +++K + G E I
Sbjct: 371 LSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430
Query: 216 GCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA--ASNIYGDVEL 262
+ID+ + G ++E + R+M E + W +++ A N YG+ L
Sbjct: 431 NSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNGYGNEAL 478
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 38/206 (18%)
Query: 82 LSAC--AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK 139
L +C ++L A+ + ++H + + G + + + N LID Y+K G + QVF+ M +
Sbjct: 26 LDSCIKSKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQR 84
Query: 140 SV-------------------------------ITWTTMIAGLALHGLGREALDMFSRME 168
++ TW +M++G A H EAL F+ M
Sbjct: 85 NIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMH 144
Query: 169 RARVKPNEITFIAILSACCHVGLVELGRRYFN-IMKSRYGIEPKIEQYGCMIDLLGRAGY 227
+ NE +F ++LSAC + + G + + I KS + + I ++D+ + G
Sbjct: 145 KEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIG--SALVDMYSKCGN 202
Query: 228 LQEAEKLLRRMPFEANAAIWGSLLAA 253
+ +A+++ M + N W SL+
Sbjct: 203 VNDAQRVFDEMG-DRNVVSWNSLITC 227
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 288 bits (736), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 206/336 (61%)
Query: 19 YAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 78
Y+K+ ++ +AR LF+ EK++ SW +I+GY Q +AI+LFR MQ P+ + +
Sbjct: 364 YSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTI 423
Query: 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 138
LSACAQLGA+ LG+W+H+ + + + ++ ALI MYAK G I +A ++F+ M
Sbjct: 424 TCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTK 483
Query: 139 KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRY 198
K+ +TW TMI+G LHG G+EAL++F M + + P +TF+ +L AC H GLV+ G
Sbjct: 484 KNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEI 543
Query: 199 FNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258
FN M RYG EP ++ Y CM+D+LGRAG+LQ A + + M E +++W +LL A I+
Sbjct: 544 FNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHK 603
Query: 259 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYI 318
D L + L +L+P N G + +LSNI++ + ++ +R+ + + K PG + I
Sbjct: 604 DTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLI 663
Query: 319 EVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 354
E+ + H F +GD SHP +Y+ L K+ G+M+ A
Sbjct: 664 EIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREA 699
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 120/244 (49%), Gaps = 5/244 (2%)
Query: 15 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 74
++ Y+K G + ALF + +++++ +I GY + +++LF+ + + +
Sbjct: 262 FISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLR 321
Query: 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 134
+++ + L + IH Y + + ++ AL +Y+K +I A ++F+
Sbjct: 322 SSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFD 378
Query: 135 NMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 194
KS+ +W MI+G +GL +A+ +F M+++ PN +T ILSAC +G + L
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSL 438
Query: 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAAS 254
G+ ++++S E I +I + + G + EA +L M + N W ++++
Sbjct: 439 GKWVHDLVRST-DFESSIYVSTALIGMYAKCGSIAEARRLFDLMT-KKNEVTWNTMISGY 496
Query: 255 NIYG 258
++G
Sbjct: 497 GLHG 500
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 15 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 74
++ YAK G + AR LF+LMT+KN ++W T+I+GY Q EA+ +F M + P
Sbjct: 461 LIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPT 520
Query: 75 EIAMLAALSACAQLGAVELGEWIHN-YIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVF 133
+ L L AC+ G V+ G+ I N I +YG V ++D+ ++G + +ALQ
Sbjct: 521 PVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFI 580
Query: 134 ENMK-NKSVITWTTMIAGLALH 154
E M W T++ +H
Sbjct: 581 EAMSIEPGSSVWETLLGACRIH 602
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 128/296 (43%), Gaps = 23/296 (7%)
Query: 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRR 65
++ +KFW + +AR +F+ M EK+ I W T+I+GY + + E+I +FR
Sbjct: 162 KMYFKFWR-----------VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRD 210
Query: 66 MQVEN-VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124
+ E+ + D +L L A A+L + LG IH+ + G + + I +Y+K G
Sbjct: 211 LINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCG 270
Query: 125 KIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS 184
KI +F + ++ + MI G +G +L +F + + + T ++++
Sbjct: 271 KIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVP 330
Query: 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA 244
H+ L+ Y +KS + + + + + ++ A KL P E +
Sbjct: 331 VSGHLMLIYAIHGY--CLKSNFLSHASVST--ALTTVYSKLNEIESARKLFDESP-EKSL 385
Query: 245 AIWGSLLAASNIYGDVELGECALQHLIKLE--PHNSGNYAILSNIYAI----LGRW 294
W ++++ G E + + K E P+ ILS + LG+W
Sbjct: 386 PSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKW 441
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 107/235 (45%), Gaps = 7/235 (2%)
Query: 20 AKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM-QVENVKPDEIAM 78
+ +G + AR +F + +V + L+ G++ + P+ ++++F + + ++KP+
Sbjct: 63 SDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTY 122
Query: 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 138
A+SA + G IH G ++ + L + ++ MY K ++ A +VF+ M
Sbjct: 123 AFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPE 182
Query: 139 KSVITWTTMIAGLALHGLGREALDMFSRM-ERARVKPNEITFIAILSACCHVGLVELGRR 197
K I W TMI+G + + E++ +F + + + + T + IL A + + LG +
Sbjct: 183 KDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQ 242
Query: 198 YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR--RMP--FEANAAIWG 248
+ + ++ G I L + G ++ L R R P NA I G
Sbjct: 243 -IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHG 296
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 288 bits (736), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 214/345 (62%), Gaps = 4/345 (1%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQ--MDQPNEAITLFRRMQVE 69
WNTMV G+ ++GD+ A+A+F+ M +++++SW +L+ GY++ DQ + VE
Sbjct: 303 WNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVE 362
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129
VKPD + M++ +S A G + G W+H + + L L++ALIDMY K G I +A
Sbjct: 363 KVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERA 422
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
VF+ K V WT+MI GLA HG G++AL +F RM+ V PN +T +A+L+AC H
Sbjct: 423 FMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHS 482
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLL-RRMPFEANAAIWG 248
GLVE G FN MK ++G +P+ E YG ++DLL RAG ++EA+ ++ ++MP + ++WG
Sbjct: 483 GLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWG 542
Query: 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308
S+L+A D+E E AL L+KLEP G Y +LSNIYA +GRW S K R+ M + G
Sbjct: 543 SILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRG 602
Query: 309 VKKMPGCSYIEVSKRVHEFVAGDT-SHPDFDRLYQILCKINGQMK 352
VKK G S + + +H FVA + +HP + + +IL + +MK
Sbjct: 603 VKKTAGYSSVVGVEGLHRFVAAEKQNHPRWTEIKRILQHLYNEMK 647
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 150/315 (47%), Gaps = 45/315 (14%)
Query: 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
WN++V Y ++G+ A +F M +V S+ +I GYA+ EA+ L+ +M +
Sbjct: 168 LWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDG 227
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG--LNTIVPLNNALIDMYAKSGKIGK 128
++PDE +L+ L C L + LG+ +H +IE+ G ++ + L+NAL+DMY K + G
Sbjct: 228 IEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGL 287
Query: 129 ALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER------------------- 169
A + F+ MK K + +W TM+ G G A +F +M +
Sbjct: 288 AKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCD 347
Query: 170 --------------ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY 215
+VKP+ +T ++++S + G + G R+ + + R ++
Sbjct: 348 QRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHG-RWVHGLVIRLQLKGDAFLS 406
Query: 216 GCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE- 274
+ID+ + G ++ A + + E + A+W S++ +G+ G+ ALQ +++
Sbjct: 407 SALIDMYCKCGIIERAFMVFKTAT-EKDVALWTSMITGLAFHGN---GQQALQLFGRMQE 462
Query: 275 ----PHNSGNYAILS 285
P+N A+L+
Sbjct: 463 EGVTPNNVTLLAVLT 477
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 121/278 (43%), Gaps = 23/278 (8%)
Query: 2 FTLSRLLYKFWNTMVAGYAKVGDLNNARALF-ELMTEKNVISWTTLIAGYAQMDQPNEAI 60
F +SRL++ + +L+ A+ LF NV + T+I+ + NE
Sbjct: 67 FPMSRLIF------FSAITYPENLDLAKLLFLNFTPNPNVFVYNTMISAVS--SSKNECF 118
Query: 61 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG-LNTIVPLNNALIDM 119
L+ M V PD L + A + L V+ IH +I G L+ L N+L+
Sbjct: 119 GLYSSMIRHRVSPDRQTFLYLMKASSFLSEVK---QIHCHIIVSGCLSLGNYLWNSLVKF 175
Query: 120 YAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 179
Y + G G A +VF M + V ++ MI G A G EAL ++ +M ++P+E T
Sbjct: 176 YMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTV 235
Query: 180 IAILSACCHVGLVELGRRYFNIMKSRYGI-EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238
+++L C H+ + LG+ ++ R + + ++D+ Y + E L +
Sbjct: 236 LSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDM-----YFKCKESGLAKR 290
Query: 239 PFEA----NAAIWGSLLAASNIYGDVELGECALQHLIK 272
F+A + W +++ GD+E + + K
Sbjct: 291 AFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPK 328
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 81/206 (39%), Gaps = 33/206 (16%)
Query: 138 NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC----------C 187
N +V + TMI+ A+ E ++S M R RV P+ TF+ ++ A C
Sbjct: 97 NPNVFVYNTMIS--AVSSSKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEVKQIHC 154
Query: 188 HV---GLVELGRRYFNIMKSRY------GI---------EPKIEQYGCMIDLLGRAGYLQ 229
H+ G + LG +N + Y G+ P + + MI + G+
Sbjct: 155 HIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSL 214
Query: 230 EAEKLLRRM---PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 286
EA KL +M E + SLL D+ LG+ + + P S N + +
Sbjct: 215 EALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNA 274
Query: 287 IYAILGRWNESGKIRKVMRDMGVKKM 312
+ + + ESG ++ M K M
Sbjct: 275 LLDMYFKCKESGLAKRAFDAMKKKDM 300
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 223/346 (64%), Gaps = 4/346 (1%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE--- 69
T++ Y+ + +A +F+ + +++ +SW L + Y + + + + LF +M+ +
Sbjct: 152 TTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDG 211
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129
VKPD + L AL ACA LGA++ G+ +H++I++ GL+ + L+N L+ MY++ G + KA
Sbjct: 212 CVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKA 271
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
QVF M+ ++V++WT +I+GLA++G G+EA++ F+ M + + P E T +LSAC H
Sbjct: 272 YQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHS 331
Query: 190 GLVELGRRYFNIMKS-RYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWG 248
GLV G +F+ M+S + I+P + YGC++DLLGRA L +A L++ M + ++ IW
Sbjct: 332 GLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWR 391
Query: 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308
+LL A ++GDVELGE + HLI+L+ +G+Y +L N Y+ +G+W + ++R +M++
Sbjct: 392 TLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKR 451
Query: 309 VKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 354
+ PGCS IE+ VHEF+ D SHP + +Y++L +IN Q+K A
Sbjct: 452 IHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIA 497
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 109/241 (45%), Gaps = 8/241 (3%)
Query: 24 DLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP-DEIAMLAAL 82
D+N + +F + T+I ++ P E LFR ++ + P + ++ AL
Sbjct: 61 DINYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFAL 120
Query: 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVI 142
C + G + G IH I G + L L+D+Y+ A +VF+ + + +
Sbjct: 121 KCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTV 180
Query: 143 TWTTMIAGLALHGLGREALDMFSRMER---ARVKPNEITFIAILSACCHVGLVELGRRYF 199
+W + + + R+ L +F +M+ VKP+ +T + L AC ++G ++ G++
Sbjct: 181 SWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVH 240
Query: 200 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA--ASNIY 257
+ + G+ + ++ + R G + +A ++ M E N W +L++ A N +
Sbjct: 241 DFIDEN-GLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMR-ERNVVSWTALISGLAMNGF 298
Query: 258 G 258
G
Sbjct: 299 G 299
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/340 (40%), Positives = 216/340 (63%), Gaps = 1/340 (0%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN-V 71
N ++ YAK G + A +F M K++ISW T+I GY++ NEA++LF + E
Sbjct: 436 NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRF 495
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
PDE + L ACA L A + G IH YI + G + + N+L+DMYAK G + A
Sbjct: 496 SPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHM 555
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
+F+++ +K +++WT MIAG +HG G+EA+ +F++M +A ++ +EI+F+++L AC H GL
Sbjct: 556 LFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGL 615
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
V+ G R+FNIM+ IEP +E Y C++D+L R G L +A + + MP +A IWG+LL
Sbjct: 616 VDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALL 675
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
I+ DV+L E + + +LEP N+G Y +++NIYA +W + ++RK + G++K
Sbjct: 676 CGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRK 735
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQM 351
PGCS+IE+ RV+ FVAGD+S+P+ + + L K+ +M
Sbjct: 736 NPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARM 775
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 146/255 (57%), Gaps = 13/255 (5%)
Query: 10 KFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
+F NT++ Y+K GDL++A+A+F M++++V+S+T++IAGYA+ EA+ LF M+ E
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129
+ PD + A L+ CA+ ++ G+ +H +I++ L + ++NAL+DMYAK G + +A
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 451
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS-RMERARVKPNEITFIAILSACCH 188
VF M+ K +I+W T+I G + + EAL +F+ +E R P+E T +L AC
Sbjct: 452 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 511
Query: 189 VGLVELGRRYFN-IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAA-- 245
+ + GR IM++ Y + + ++D+ + G L LL M F+ A+
Sbjct: 512 LSAFDKGREIHGYIMRNGYFSDRHVANS--LVDMYAKCGAL-----LLAHMLFDDIASKD 564
Query: 246 --IWGSLLAASNIYG 258
W ++A ++G
Sbjct: 565 LVSWTVMIAGYGMHG 579
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 3/227 (1%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N++VA Y K +++AR +F+ MTE++VISW ++I GY + +++F +M V ++
Sbjct: 234 NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 293
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
D +++ + CA + LG +H+ + + N L+DMY+K G + A V
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 353
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F M ++SV+++T+MIAG A GL EA+ +F ME + P+ T A+L+ C L+
Sbjct: 354 FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 413
Query: 193 ELGRRYFN-IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238
+ G+R I ++ G + + ++D+ + G +QEAE + M
Sbjct: 414 DEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEM 458
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 109/222 (49%), Gaps = 3/222 (1%)
Query: 19 YAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 78
Y GDL A +F+ + + + W L+ A+ + +I LF++M V+ D
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198
Query: 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 138
+ + L +V GE +H +I + G + N+L+ Y K+ ++ A +VF+ M
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTE 258
Query: 139 KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRY 198
+ VI+W ++I G +GL + L +F +M + ++ + T +++ + C L+ LGR
Sbjct: 259 RDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAV 318
Query: 199 FNI-MKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP 239
+I +K+ + E + ++D+ + G L A+ + R M
Sbjct: 319 HSIGVKACFSREDRF--CNTLLDMYSKCGDLDSAKAVFREMS 358
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVF 133
D + + L CA +++ G+ + N+I G L + L MY G + +A +VF
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 134 ENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 193
+ +K + + W ++ LA G ++ +F +M + V+ + TF + + + V
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212
Query: 194 LGRRYFN-IMKSRYG 207
G + I+KS +G
Sbjct: 213 GGEQLHGFILKSGFG 227
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/339 (41%), Positives = 217/339 (64%), Gaps = 4/339 (1%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN+M+ G+AK G ++ A+ LF+ M ++N +SW ++I+G+ + + +A+ +FR MQ ++V
Sbjct: 195 WNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDV 254
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYI--EQYGLNTIVPLNNALIDMYAKSGKIGKA 129
KPD M++ L+ACA LGA E G WIH YI ++ LN+IV ALIDMY K G I +
Sbjct: 255 KPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVV--TALIDMYCKCGCIEEG 312
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
L VFE K + W +MI GLA +G A+D+FS +ER+ ++P+ ++FI +L+AC H
Sbjct: 313 LNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHS 372
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249
G V +F +MK +Y IEP I+ Y M+++LG AG L+EAE L++ MP E + IW S
Sbjct: 373 GEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSS 432
Query: 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309
LL+A G+VE+ + A + L KL+P + Y +LSN YA G + E+ + R +M++ +
Sbjct: 433 LLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQM 492
Query: 310 KKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKIN 348
+K GCS IEV VHEF++ +HP +Y +L +N
Sbjct: 493 EKEVGCSSIEVDFEVHEFISCGGTHPKSAEIYSLLDILN 531
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 37/266 (13%)
Query: 20 AKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM--QVENVKPDEIA 77
A D+N A +F + KN W T+I G+++ P AI++F M +VKP +
Sbjct: 69 ASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLT 128
Query: 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 137
+ A +LG G +H + + GL + N ++ MY G + +A ++F M
Sbjct: 129 YPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMI 188
Query: 138 NKSVITWTTMIAGLALHGL-----------------------------GR--EALDMFSR 166
V+ W +MI G A GL GR +ALDMF
Sbjct: 189 GFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFRE 248
Query: 167 MERARVKPNEITFIAILSACCHVGLVELGRRYFN-IMKSRYGIEPKIEQYGCMIDLLGRA 225
M+ VKP+ T +++L+AC ++G E GR I+++R+ + + +ID+ +
Sbjct: 249 MQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIV--VTALIDMYCKC 306
Query: 226 GYLQEAEKLLRRMPFEANAAIWGSLL 251
G ++E + P + + W S++
Sbjct: 307 GCIEEGLNVFECAP-KKQLSCWNSMI 331
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 285 bits (729), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 136/354 (38%), Positives = 217/354 (61%), Gaps = 1/354 (0%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
+++V YAK + ++ +F + ++ ISW +L+AGY Q + NEA+ LFR+M VK
Sbjct: 281 SSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVK 340
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
P +A + + ACA L + LG+ +H Y+ + G + + + +AL+DMY+K G I A ++
Sbjct: 341 PGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKI 400
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192
F+ M ++WT +I G ALHG G EA+ +F M+R VKPN++ F+A+L+AC HVGLV
Sbjct: 401 FDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLV 460
Query: 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
+ YFN M YG+ ++E Y + DLLGRAG L+EA + +M E ++W +LL+
Sbjct: 461 DEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLS 520
Query: 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 312
+ +++ ++EL E + + ++ N G Y ++ N+YA GRW E K+R MR G++K
Sbjct: 521 SCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKK 580
Query: 313 PGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLE 366
P CS+IE+ + H FV+GD SHP D++ + L + QM+ E + SGVL
Sbjct: 581 PACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQME-KEGYVADTSGVLH 633
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 132/234 (56%), Gaps = 2/234 (0%)
Query: 25 LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84
+++ R +FE+M K+V+S+ T+IAGYAQ +A+ + R M ++KPD + + L
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITW 144
++ V G+ IH Y+ + G+++ V + ++L+DMYAKS +I + +VF + + I+W
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 145 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 204
+++AG +G EAL +F +M A+VKP + F +++ AC H+ + LG++ +
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVL- 370
Query: 205 RYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258
R G I ++D+ + G ++ A K+ RM + W +++ ++G
Sbjct: 371 RGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALHG 423
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 54/266 (20%)
Query: 32 FELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV 91
F+ + V++W ++I + ++A+ F M+ PD + L +C + +
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 92 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAK-----------------------SGK--- 125
GE +H +I + G++ + NAL++MYAK SG
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 126 ----------IGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPN 175
I +VFE M K V+++ T+IAG A G+ +AL M M +KP+
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241
Query: 176 EITFIAILSACCHVGLVELGRRYFNIMKS--------RYGIEPKIEQYGCMIDLLGRAGY 227
T ++L + Y +++K R GI+ + ++D+ ++
Sbjct: 242 SFTLSSVLP---------IFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSAR 292
Query: 228 LQEAEKLLRRMPFEANAAIWGSLLAA 253
++++E++ R+ + + W SL+A
Sbjct: 293 IEDSERVFSRL-YCRDGISWNSLVAG 317
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 285 bits (728), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 211/317 (66%)
Query: 19 YAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 78
YAK G + +A +FE M +K+ ++W++++AGY Q EA+ L+RR Q +++ ++ +
Sbjct: 207 YAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTL 266
Query: 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 138
+ + AC+ L A+ G+ +H I + G + V + ++ +DMYAK G + ++ +F ++
Sbjct: 267 SSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQE 326
Query: 139 KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRY 198
K++ W T+I+G A H +E + +F +M++ + PNE+TF ++LS C H GLVE GRR+
Sbjct: 327 KNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRF 386
Query: 199 FNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258
F +M++ YG+ P + Y CM+D+LGRAG L EA +L++ +PF+ A+IWGSLLA+ +Y
Sbjct: 387 FKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYK 446
Query: 259 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYI 318
++EL E A + L +LEP N+GN+ +LSNIYA +W E K RK++RD VKK+ G S+I
Sbjct: 447 NLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWI 506
Query: 319 EVSKRVHEFVAGDTSHP 335
++ +VH F G++ HP
Sbjct: 507 DIKDKVHTFSVGESGHP 523
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 135/246 (54%), Gaps = 14/246 (5%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
N ++ Y+K G + AR +F+ M E++++SW T+I Y + +EA+ +F M+ E K
Sbjct: 100 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 159
Query: 73 PDEIAMLAALSACA-QLGAVELGEWIHNYIEQYGLNTIVPLN----NALIDMYAKSGKIG 127
E + + LSAC A+E + + + T + LN AL+D+YAK G I
Sbjct: 160 FSEFTISSVLSACGVNCDALECKK-----LHCLSVKTCIDLNLYVGTALLDLYAKCGMIK 214
Query: 128 KALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 187
A+QVFE+M++KS +TW++M+AG + EAL ++ R +R ++ N+ T +++ AC
Sbjct: 215 DAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACS 274
Query: 188 HV-GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAI 246
++ L+E + + I KS +G + +D+ + G L+E+ + + E N +
Sbjct: 275 NLAALIEGKQMHAVICKSGFGSNVFVASSA--VDMYAKCGSLRESYIIFSEVQ-EKNLEL 331
Query: 247 WGSLLA 252
W ++++
Sbjct: 332 WNTIIS 337
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 2/171 (1%)
Query: 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV 141
L CA+ GAV + H I + L V L N LI+ Y+K G + A QVF+ M +S+
Sbjct: 68 LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSL 127
Query: 142 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNI 201
++W TMI + + EALD+F M K +E T ++LSA C V L + +
Sbjct: 128 VSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSA-CGVNCDALECKKLHC 186
Query: 202 MKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252
+ + I+ + ++DL + G +++A ++ M + ++ W S++A
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVA 236
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 284 bits (726), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 207/338 (61%), Gaps = 7/338 (2%)
Query: 13 NTMVAGYAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
N ++ YAK ++ ARA+F+ ++ E++V++WT +I GY+Q N+A+ L M E+
Sbjct: 411 NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470
Query: 71 --VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPL--NNALIDMYAKSGKI 126
+P+ + AL ACA L A+ +G+ IH Y + N VPL +N LIDMYAK G I
Sbjct: 471 CQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA-VPLFVSNCLIDMYAKCGSI 529
Query: 127 GKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186
A VF+NM K+ +TWT+++ G +HG G EAL +F M R K + +T + +L AC
Sbjct: 530 SDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYAC 589
Query: 187 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAI 246
H G+++ G YFN MK+ +G+ P E Y C++DLLGRAG L A +L+ MP E +
Sbjct: 590 SHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVV 649
Query: 247 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306
W + L+ I+G VELGE A + + +L ++ G+Y +LSN+YA GRW + +IR +MR
Sbjct: 650 WVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRH 709
Query: 307 MGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQIL 344
GVKK PGCS++E K F GD +HP +YQ+L
Sbjct: 710 KGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL 747
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 143/266 (53%), Gaps = 24/266 (9%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEK----NVISWTTLIAGYAQMDQPNEAITLFRRMQ 67
WN MVAGY+++G +A LFE M E+ +V++W+ I+GYAQ EA+ + R+M
Sbjct: 298 WNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQML 357
Query: 68 VENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL----------NTIVPLNNALI 117
+KP+E+ +++ LS CA +GA+ G+ IH Y +Y + N ++ N LI
Sbjct: 358 SSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI---NQLI 414
Query: 118 DMYAKSGKIGKALQVFENM--KNKSVITWTTMIAGLALHGLGREALDMFSRM--ERARVK 173
DMYAK K+ A +F+++ K + V+TWT MI G + HG +AL++ S M E + +
Sbjct: 415 DMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTR 474
Query: 174 PNEITFIAILSACCHVGLVELGRR-YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 232
PN T L AC + + +G++ + ++++ P C+ID+ + G + +A
Sbjct: 475 PNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGSISDAR 533
Query: 233 KLLRRMPFEANAAIWGSLLAASNIYG 258
+ M N W SL+ ++G
Sbjct: 534 LVFDNM-MAKNEVTWTSLMTGYGMHG 558
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 139/291 (47%), Gaps = 45/291 (15%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE-NV 71
N +VA Y++ L++AR +F+ M+ +V+SW ++I YA++ +P A+ +F RM E
Sbjct: 166 NALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGC 225
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+PD I ++ L CA LG LG+ +H + + + + N L+DMYAK G + +A
Sbjct: 226 RPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANT 285
Query: 132 VFENMKNKSVITWTTMIA-----------------------------------GLALHGL 156
VF NM K V++W M+A G A GL
Sbjct: 286 VFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGL 345
Query: 157 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG 216
G EAL + +M + +KPNE+T I++LS C VG + G+ + +Y I+ + +G
Sbjct: 346 GYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE-IHCYAIKYPIDLRKNGHG 404
Query: 217 -------CMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGD 259
+ID+ + + A + + P E + W ++ + +GD
Sbjct: 405 DENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGD 455
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 5/250 (2%)
Query: 15 MVAGYAKVGDLNNARALFELM--TEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
+++ Y VG L++A +L ++ V W +LI Y N+ + LF M +
Sbjct: 65 LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
PD AC ++ +V GE H G + V + NAL+ MY++ + A +V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184
Query: 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA-RVKPNEITFIAILSACCHVGL 191
F+ M V++W ++I A G + AL+MFSRM +P+ IT + +L C +G
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
LG++ + I+ + C++D+ + G + EA + M + + W +++
Sbjct: 245 HSLGKQLHCFAVTSEMIQ-NMFVGNCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMV 302
Query: 252 AASNIYGDVE 261
A + G E
Sbjct: 303 AGYSQIGRFE 312
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 284 bits (726), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 217/355 (61%), Gaps = 2/355 (0%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQV-EN 70
WN++VAGY + G+++ A FE M EKN++SW T+I+G Q EAI +F MQ E
Sbjct: 406 WNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEG 465
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
V D + M++ SAC LGA++L +WI+ YIE+ G+ V L L+DM+++ G A+
Sbjct: 466 VNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAM 525
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
+F ++ N+ V WT I +A+ G A+++F M +KP+ + F+ L+AC H G
Sbjct: 526 SIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGG 585
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
LV+ G+ F M +G+ P+ YGCM+DLLGRAG L+EA +L+ MP E N IW SL
Sbjct: 586 LVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSL 645
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
LAA + G+VE+ A + + L P +G+Y +LSN+YA GRWN+ K+R M++ G++
Sbjct: 646 LAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLR 705
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVL 365
K PG S I++ + HEF +GD SHP+ + +L +++ + H+ + S VL
Sbjct: 706 KPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVP-DLSNVL 759
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 137/253 (54%), Gaps = 8/253 (3%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM-QVENV 71
N++V YA+ G+L++AR +F+ M+E+NV+SWT++I GYA+ D +A+ LF RM + E V
Sbjct: 173 NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEV 232
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
P+ + M+ +SACA+L +E GE ++ +I G+ + +AL+DMY K I A +
Sbjct: 233 TPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKR 292
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
+F+ ++ M + GL REAL +F+ M + V+P+ I+ ++ +S+C +
Sbjct: 293 LFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRN 352
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
+ G+ + R G E +ID+ + A ++ RM W S++
Sbjct: 353 ILWGKSCHGYVL-RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMS-NKTVVTWNSIV 410
Query: 252 AASNIYGDVELGE 264
A G VE GE
Sbjct: 411 A-----GYVENGE 418
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 105/194 (54%), Gaps = 2/194 (1%)
Query: 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE 102
+ +LI GYA NEAI LF RM + PD+ LSACA+ A G IH I
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 103 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALD 162
+ G + + N+L+ YA+ G++ A +VF+ M ++V++WT+MI G A ++A+D
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 163 MFSRMER-ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 221
+F RM R V PN +T + ++SAC + +E G + + +++ GIE ++D+
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS-GIEVNDLMVSALVDM 280
Query: 222 LGRAGYLQEAEKLL 235
+ + A++L
Sbjct: 281 YMKCNAIDVAKRLF 294
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 125/259 (48%), Gaps = 35/259 (13%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72
+ +V Y K ++ A+ LF+ N+ + + Y + EA+ +F M V+
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132
PD I+ML+A+S+C+QL + G+ H Y+ + G + + NALIDMY K + A ++
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 133 FENMKNKSVITWTTMIAGLALHG-------------------------------LGREAL 161
F+ M NK+V+TW +++AG +G L EA+
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454
Query: 162 DMFSRMERAR-VKPNEITFIAILSACCHVGLVELGR-RYFNIMKSRYGIEPKIEQYGCMI 219
++F M+ V + +T ++I SAC H+G ++L + Y+ I K+ GI+ + ++
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN--GIQLDVRLGTTLV 512
Query: 220 DLLGRAGYLQEAEKLLRRM 238
D+ R G + A + +
Sbjct: 513 DMFSRCGDPESAMSIFNSL 531
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 284 bits (726), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 141/358 (39%), Positives = 221/358 (61%), Gaps = 1/358 (0%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
W +MVAGY K G + NAR +F+ M +N+ +W+ +I GYA+ + +AI LF M+ E V
Sbjct: 186 WTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGV 245
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+E M++ +S+CA LGA+E GE + Y+ + + + L AL+DM+ + G I KA+
Sbjct: 246 VANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIH 305
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VFE + ++W+++I GLA+HG +A+ FS+M P ++TF A+LSAC H GL
Sbjct: 306 VFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGL 365
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
VE G + MK +GIEP++E YGC++D+LGRAG L EAE + +M + NA I G+LL
Sbjct: 366 VEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALL 425
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
A IY + E+ E LIK++P +SG Y +LSNIYA G+W++ +R +M++ VKK
Sbjct: 426 GACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKK 485
Query: 312 MPGCSYIEVSKRVHEFVAGDTS-HPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESD 368
PG S IE+ ++++F GD HP+ ++ + +I G+++ + N + D
Sbjct: 486 PPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVD 543
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 134/295 (45%), Gaps = 37/295 (12%)
Query: 25 LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84
L A +F + N+ + LI ++ +P++A + +M + PD I + A
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126
Query: 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITW 144
+++ V +GE H+ I ++G V + N+L+ MYA G I A ++F M + V++W
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSW 186
Query: 145 TTMIAGLALHGL---GRE----------------------------ALDMFSRMERARVK 173
T+M+AG G+ RE A+D+F M+R V
Sbjct: 187 TSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV 246
Query: 174 PNEITFIAILSACCHVGLVELGRR-YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 232
NE ++++S+C H+G +E G R Y ++KS + + ++D+ R G +++A
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGT--ALVDMFWRCGDIEKAI 304
Query: 233 KLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE--PHNSGNYAILS 285
+ +P E ++ W S++ ++G +I L P + A+LS
Sbjct: 305 HVFEGLP-ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLS 358
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 133/342 (38%), Positives = 220/342 (64%), Gaps = 2/342 (0%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM--QVEN 70
T+V YA+ G ++ A +F M +NV+SW+ +IA YA+ + EA+ FR M + ++
Sbjct: 221 TTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKD 280
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
P+ + M++ L ACA L A+E G+ IH YI + GL++I+P+ +AL+ MY + GK+
Sbjct: 281 SSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQ 340
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
+VF+ M ++ V++W ++I+ +HG G++A+ +F M P +TF+++L AC H G
Sbjct: 341 RVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 400
Query: 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250
LVE G+R F M +GI+P+IE Y CM+DLLGRA L EA K+++ M E +WGSL
Sbjct: 401 LVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSL 460
Query: 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310
L + I+G+VEL E A + L LEP N+GNY +L++IYA W+E +++K++ G++
Sbjct: 461 LGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 520
Query: 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
K+PG ++EV ++++ FV+ D +P ++++ L K+ MK
Sbjct: 521 KLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMK 562
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 144/309 (46%), Gaps = 20/309 (6%)
Query: 15 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 74
++ Y+ +G ++ AR +F+ ++ + W L E + L+ +M V+ D
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESD 177
Query: 75 EIAMLAALSAC----AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
L AC + + G+ IH ++ + G ++ V + L+DMYA+ G + A
Sbjct: 178 RFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYAS 237
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRM--ERARVKPNEITFIAILSACCH 188
VF M ++V++W+ MIA A +G EAL F M E PN +T +++L AC
Sbjct: 238 YVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACAS 297
Query: 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWG 248
+ +E G+ + R G++ + ++ + GR G L+ +++ RM + + W
Sbjct: 298 LAALEQGKLIHGYILRR-GLDSILPVISALVTMYGRCGKLEVGQRVFDRM-HDRDVVSWN 355
Query: 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK------ 302
SL+++ ++G G+ A+Q I E +G ++LG + G + +
Sbjct: 356 SLISSYGVHG---YGKKAIQ--IFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFE 410
Query: 303 -VMRDMGVK 310
+ RD G+K
Sbjct: 411 TMWRDHGIK 419
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 10/217 (4%)
Query: 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNY 100
IS LI + + +AI + + + + E+ +L C ++ +H +
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILC----CGHRSSLSDALRVHRH 102
Query: 101 IEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREA 160
I G + L LI MY+ G + A +VF+ + +++ W + L L G G E
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 161 LDMFSRMERARVKPNEITFIAILSAC----CHVGLVELGRRYFNIMKSRYGIEPKIEQYG 216
L ++ +M R V+ + T+ +L AC C V + G+ + +R G +
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKE-IHAHLTRRGYSSHVYIMT 221
Query: 217 CMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAA 253
++D+ R G + A + MP N W +++A
Sbjct: 222 TLVDMYARFGCVDYASYVFGGMPVR-NVVSWSAMIAC 257
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 281 bits (720), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 205/343 (59%)
Query: 10 KFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 69
K N + Y K GDL ++ LFE ++ KN++SW T+I + Q + + F +
Sbjct: 170 KVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRV 229
Query: 70 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129
+PD+ LA L +C +G V L + IH I G + + AL+D+Y+K G++ +
Sbjct: 230 GHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDS 289
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189
VF + + + WT M+A A HG GR+A+ F M + P+ +TF +L+AC H
Sbjct: 290 STVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHS 349
Query: 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249
GLVE G+ YF M RY I+P+++ Y CM+DLLGR+G LQ+A L++ MP E ++ +WG+
Sbjct: 350 GLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGA 409
Query: 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309
LL A +Y D +LG A + L +LEP + NY +LSNIY+ G W ++ +IR +M+ G+
Sbjct: 410 LLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGL 469
Query: 310 KKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
+ GCSYIE ++H+FV GD SHP+ +++ + L +I +MK
Sbjct: 470 VRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMK 512
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 138/261 (52%), Gaps = 9/261 (3%)
Query: 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV- 71
+ +V Y ++G A LF+ M E++++SW +LI+GY+ + + RM + V
Sbjct: 70 DQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVG 129
Query: 72 -KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130
+P+E+ L+ +SAC G+ E G IH + ++G+ V + NA I+ Y K+G + +
Sbjct: 130 FRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSC 189
Query: 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190
++FE++ K++++W TMI +GL + L F+ R +P++ TF+A+L +C +G
Sbjct: 190 KLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMG 249
Query: 191 LVELGRRYFN-IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249
+V L + IM + I ++DL + G L+++ + + ++ W +
Sbjct: 250 VVRLAQGIHGLIMFGGFSGNKCITT--ALLDLYSKLGRLEDSSTVFHEIT-SPDSMAWTA 306
Query: 250 LLAASNIYGDVELGECALQHL 270
+LAA +G G A++H
Sbjct: 307 MLAAYATHG---FGRDAIKHF 324
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 68 VENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127
V ++ + +++AA+ +C ++EL +H + + + + L+ Y + G
Sbjct: 27 VHSLDANVSSLIAAVKSCV---SIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDV 83
Query: 128 KALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARV--KPNEITFIAILSA 185
A ++F+ M + +++W ++I+G + G + ++ SRM + V +PNE+TF++++SA
Sbjct: 84 CAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISA 143
Query: 186 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAA 245
C + G E GR ++ ++G+ +++ I+ G+ G L + KL + + N
Sbjct: 144 CVYGGSKEEGRCIHGLVM-KFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIK-NLV 201
Query: 246 IWGSLL 251
W +++
Sbjct: 202 SWNTMI 207
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 281 bits (719), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 212/328 (64%), Gaps = 4/328 (1%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
W ++A YA+VG++ A LFE + K++++WT ++ G+AQ +P EA+ F RM+ +
Sbjct: 218 WTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 277
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQ--YGLNTIVPLNNALIDMYAKSGKIGKA 129
+ DE+ + +SACAQLGA + + ++ Y + V + +ALIDMY+K G + +A
Sbjct: 278 RADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEA 337
Query: 130 LQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRM-ERARVKPNEITFIAILSACCH 188
+ VF +M NK+V T+++MI GLA HG +EAL +F M + +KPN +TF+ L AC H
Sbjct: 338 VNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSH 397
Query: 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWG 248
GLV+ GR+ F+ M +G++P + Y CM+DLLGR G LQEA +L++ M E + +WG
Sbjct: 398 SGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWG 457
Query: 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308
+LL A I+ + E+ E A +HL +LEP GNY +LSN+YA G W ++RK++++ G
Sbjct: 458 ALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKG 517
Query: 309 VKKMPGCSY-IEVSKRVHEFVAGDTSHP 335
+KK P S+ ++ + ++H+F G+ +HP
Sbjct: 518 LKKTPAVSWVVDKNGQMHKFFPGNLNHP 545
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 32/243 (13%)
Query: 28 ARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87
AR + E + +N WT +I GYA + +EAI ++ M+ E + P A L AC
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161
Query: 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTM 147
+ + LG H + V + N +IDMY K I A +VF+ M + VI+WT +
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221
Query: 148 IA-------------------------------GLALHGLGREALDMFSRMERARVKPNE 176
IA G A + +EAL+ F RME++ ++ +E
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281
Query: 177 ITFIAILSACCHVGLVELGRRYFNI-MKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLL 235
+T +SAC +G + R I KS Y + +ID+ + G ++EA +
Sbjct: 282 VTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF 341
Query: 236 RRM 238
M
Sbjct: 342 MSM 344
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 10/194 (5%)
Query: 77 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK--ALQVFE 134
++++ L C L ++ IH ++ + GL+ + LI K G A +V E
Sbjct: 51 SLISKLDDCINLNQIK---QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIE 107
Query: 135 NMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 194
++ ++ WT +I G A+ G EA+ M+ M + + P TF A+L AC + + L
Sbjct: 108 PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNL 167
Query: 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAAS 254
GR+ F+ R + MID+ + + A K+ MP E + W L+AA
Sbjct: 168 GRQ-FHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMP-ERDVISWTELIAA- 224
Query: 255 NIYGDVELGECALQ 268
Y V ECA +
Sbjct: 225 --YARVGNMECAAE 236
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/341 (38%), Positives = 208/341 (60%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71
WN +++GY G + A+ +F+ M EKN++SW +I+G A+ E + LF M+ E
Sbjct: 354 WNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGF 413
Query: 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131
+P + A A+ +CA LGA G+ H + + G ++ + NALI MYAK G + +A Q
Sbjct: 414 EPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQ 473
Query: 132 VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191
VF M ++W +IA L HG G EA+D++ M + ++P+ IT + +L+AC H GL
Sbjct: 474 VFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGL 533
Query: 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251
V+ GR+YF+ M++ Y I P + Y +IDLL R+G +AE ++ +PF+ A IW +LL
Sbjct: 534 VDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALL 593
Query: 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311
+ ++G++ELG A L L P + G Y +LSN++A G+W E ++RK+MRD GVKK
Sbjct: 594 SGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKK 653
Query: 312 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352
CS+IE+ +VH F+ DTSHP+ + +Y L + +M+
Sbjct: 654 EVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMR 694
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 135/282 (47%), Gaps = 41/282 (14%)
Query: 12 WNTMVAGYAKVGDLNNARALFELMTEK-NVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
W TM+ GY K G + L E M + ++++ +I+GY EA+ + RRM
Sbjct: 222 WTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSG 281
Query: 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYI---EQYGLNTIVPLNNALIDMYAKSGK-- 125
++ DE + + ACA G ++LG+ +H Y+ E + + +N+L+ +Y K GK
Sbjct: 282 IELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFH----FDNSLVSLYYKCGKFD 337
Query: 126 -----------------------------IGKALQVFENMKNKSVITWTTMIAGLALHGL 156
IG+A +F+ MK K++++W MI+GLA +G
Sbjct: 338 EARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGF 397
Query: 157 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG 216
G E L +FS M+R +P + F + +C +G G++Y + + G + +
Sbjct: 398 GEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL-KIGFDSSLSAGN 456
Query: 217 CMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258
+I + + G ++EA ++ R MP ++ W +L+AA +G
Sbjct: 457 ALITMYAKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQHG 497
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 122/280 (43%), Gaps = 42/280 (15%)
Query: 13 NTMVAGYAKVGDLNNARALFE--LMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 70
TMV+GY GD+ AR +FE + ++ + + +I G++ + AI LF +M+ E
Sbjct: 84 TTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143
Query: 71 VKPDEIAMLAALSACAQLGAVE-LGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK---- 125
KPD + L+ A + E H + G I ++NAL+ +Y+K
Sbjct: 144 FKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSL 203
Query: 126 IGKALQVFENMKNKSVITWTTM--------------------------------IAGLAL 153
+ A +VF+ + K +WTTM I+G
Sbjct: 204 LHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVN 263
Query: 154 HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE 213
G +EAL+M RM + ++ +E T+ +++ AC GL++LG++ + R +
Sbjct: 264 RGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFD 323
Query: 214 QYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAA 253
++ L + G EA + +MP + + W +LL+
Sbjct: 324 N--SLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSG 360
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 33/129 (25%)
Query: 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIA 149
+++L +H I +G + N LID+Y KS ++ A Q+F+ + I TTM++
Sbjct: 29 SLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVS 88
Query: 150 GLALHG---------------------------------LGREALDMFSRMERARVKPNE 176
G G G A+++F +M+ KP+
Sbjct: 89 GYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDN 148
Query: 177 ITFIAILSA 185
TF ++L+
Sbjct: 149 FTFASVLAG 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,177,426
Number of Sequences: 539616
Number of extensions: 5155498
Number of successful extensions: 17650
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 12233
Number of HSP's gapped (non-prelim): 2196
length of query: 372
length of database: 191,569,459
effective HSP length: 119
effective length of query: 253
effective length of database: 127,355,155
effective search space: 32220854215
effective search space used: 32220854215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)