Query 017414
Match_columns 372
No_of_seqs 458 out of 2731
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 08:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2.9E-63 6.3E-68 469.3 42.6 365 6-370 256-620 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.3E-58 2.8E-63 447.5 42.9 362 5-369 420-781 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.7E-52 3.8E-57 399.7 34.7 347 4-363 432-792 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 3.3E-51 7.2E-56 390.9 35.9 347 5-364 402-758 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.2E-50 4.7E-55 381.8 34.2 341 6-363 155-497 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 2.7E-50 5.9E-55 389.6 30.4 355 6-366 219-595 (857)
7 PRK11788 tetratricopeptide rep 99.9 1.3E-23 2.9E-28 187.1 30.0 298 16-317 42-357 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 8.9E-23 1.9E-27 201.0 32.2 297 6-309 564-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.3E-22 5.1E-27 198.0 35.1 297 3-305 595-898 (899)
10 PRK11788 tetratricopeptide rep 99.9 9.6E-21 2.1E-25 168.8 28.3 267 2-272 62-346 (389)
11 PRK15174 Vi polysaccharide exp 99.9 4.3E-19 9.3E-24 166.2 32.8 297 5-307 72-381 (656)
12 PRK15174 Vi polysaccharide exp 99.9 7.4E-19 1.6E-23 164.6 34.3 291 12-307 45-347 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 7.4E-18 1.6E-22 158.2 34.3 249 55-307 309-571 (615)
14 KOG4626 O-linked N-acetylgluco 99.9 8.4E-19 1.8E-23 152.1 25.2 292 7-306 114-416 (966)
15 TIGR00990 3a0801s09 mitochondr 99.8 3.2E-17 7E-22 153.9 34.9 292 11-307 129-496 (615)
16 KOG4626 O-linked N-acetylgluco 99.8 9.4E-19 2E-23 151.8 21.1 299 2-307 143-485 (966)
17 PRK11447 cellulose synthase su 99.8 8.9E-17 1.9E-21 160.5 34.5 196 4-203 298-522 (1157)
18 PRK11447 cellulose synthase su 99.8 8.1E-16 1.7E-20 153.8 36.4 299 4-311 380-745 (1157)
19 PRK10049 pgaA outer membrane p 99.8 2.7E-15 5.8E-20 143.7 35.6 299 5-307 45-422 (765)
20 PRK10049 pgaA outer membrane p 99.8 3.5E-15 7.5E-20 142.9 34.5 303 3-307 77-456 (765)
21 PF13429 TPR_15: Tetratricopep 99.8 4.7E-18 1E-22 144.0 11.0 256 45-304 13-274 (280)
22 PRK09782 bacteriophage N4 rece 99.7 2.4E-14 5.1E-19 138.0 35.3 294 7-307 374-706 (987)
23 PRK09782 bacteriophage N4 rece 99.7 3E-14 6.6E-19 137.2 32.9 263 39-310 476-743 (987)
24 PRK10747 putative protoheme IX 99.7 4.5E-14 9.7E-19 125.2 30.8 285 12-306 85-389 (398)
25 KOG2076 RNA polymerase III tra 99.7 1.1E-13 2.5E-18 125.4 29.8 290 13-306 143-511 (895)
26 KOG1126 DNA-binding cell divis 99.7 1.3E-14 2.9E-19 127.5 22.1 277 22-307 332-620 (638)
27 PF13429 TPR_15: Tetratricopep 99.7 4.5E-16 9.8E-21 131.9 10.8 256 9-272 9-276 (280)
28 TIGR00540 hemY_coli hemY prote 99.7 4.1E-13 9E-18 119.7 29.4 288 11-305 84-397 (409)
29 KOG1126 DNA-binding cell divis 99.7 3.6E-14 7.8E-19 124.8 21.6 247 55-307 334-586 (638)
30 PRK14574 hmsH outer membrane p 99.6 2.5E-12 5.5E-17 121.7 34.2 140 14-156 73-218 (822)
31 PRK14574 hmsH outer membrane p 99.6 2.6E-12 5.7E-17 121.6 33.9 296 9-307 102-479 (822)
32 PRK10747 putative protoheme IX 99.6 1.8E-12 3.9E-17 115.0 30.7 255 12-273 121-390 (398)
33 COG2956 Predicted N-acetylgluc 99.6 1.1E-12 2.5E-17 105.9 25.5 302 22-327 48-367 (389)
34 TIGR00540 hemY_coli hemY prote 99.6 3.9E-12 8.5E-17 113.4 31.0 262 8-272 117-398 (409)
35 KOG1155 Anaphase-promoting com 99.6 2.3E-12 4.9E-17 109.0 26.1 221 83-306 235-494 (559)
36 KOG2003 TPR repeat-containing 99.6 7.6E-13 1.6E-17 111.7 22.6 274 16-294 426-710 (840)
37 COG3071 HemY Uncharacterized e 99.6 1.5E-11 3.2E-16 102.4 28.9 290 14-311 87-394 (400)
38 COG2956 Predicted N-acetylgluc 99.6 4.4E-12 9.6E-17 102.5 24.0 268 1-272 61-346 (389)
39 KOG4318 Bicoid mRNA stability 99.6 2.5E-13 5.5E-18 122.9 18.1 265 61-365 11-276 (1088)
40 KOG4422 Uncharacterized conser 99.6 6.7E-12 1.4E-16 105.3 24.7 131 2-136 200-339 (625)
41 TIGR02521 type_IV_pilW type IV 99.5 5.1E-12 1.1E-16 104.1 23.2 196 110-306 31-231 (234)
42 KOG1155 Anaphase-promoting com 99.5 4E-11 8.6E-16 101.6 27.3 249 48-304 270-533 (559)
43 COG3071 HemY Uncharacterized e 99.5 2.5E-10 5.4E-15 95.2 30.0 258 8-272 117-389 (400)
44 PRK12370 invasion protein regu 99.5 1.3E-11 2.8E-16 114.3 25.2 259 38-308 254-536 (553)
45 PRK12370 invasion protein regu 99.5 1.5E-11 3.3E-16 113.8 25.4 209 90-305 276-500 (553)
46 KOG0547 Translocase of outer m 99.5 2E-11 4.4E-16 104.0 23.2 190 113-306 363-565 (606)
47 KOG2002 TPR-containing nuclear 99.5 2.9E-11 6.4E-16 111.0 25.1 306 2-311 263-597 (1018)
48 KOG4422 Uncharacterized conser 99.5 2.8E-11 6E-16 101.6 22.9 234 74-308 206-463 (625)
49 KOG1915 Cell cycle control pro 99.5 3E-10 6.4E-15 96.7 28.2 319 20-350 152-536 (677)
50 KOG2002 TPR-containing nuclear 99.5 3.3E-11 7E-16 110.7 23.9 300 6-310 449-801 (1018)
51 TIGR02521 type_IV_pilW type IV 99.5 7.3E-11 1.6E-15 97.1 23.9 192 40-236 31-227 (234)
52 KOG1173 Anaphase-promoting com 99.4 1.1E-10 2.4E-15 101.3 24.0 258 42-304 246-515 (611)
53 KOG1129 TPR repeat-containing 99.4 1.1E-11 2.3E-16 100.5 16.5 224 79-307 227-458 (478)
54 KOG1173 Anaphase-promoting com 99.4 3.7E-10 7.9E-15 98.2 26.0 280 6-288 241-533 (611)
55 KOG1840 Kinesin light chain [C 99.4 1E-10 2.2E-15 103.9 23.4 231 75-305 199-477 (508)
56 KOG0495 HAT repeat protein [RN 99.4 1E-09 2.2E-14 97.0 28.9 293 16-315 413-718 (913)
57 KOG0547 Translocase of outer m 99.4 2.6E-10 5.7E-15 97.4 23.6 290 13-307 119-491 (606)
58 KOG1174 Anaphase-promoting com 99.4 3.6E-10 7.9E-15 94.6 23.7 271 4-280 227-507 (564)
59 PF13041 PPR_2: PPR repeat fam 99.4 1.2E-12 2.6E-17 78.8 6.2 50 38-87 1-50 (50)
60 KOG1129 TPR repeat-containing 99.4 7.7E-11 1.7E-15 95.7 17.5 229 43-276 226-461 (478)
61 KOG2003 TPR repeat-containing 99.4 2.9E-10 6.3E-15 96.4 21.4 253 49-306 428-688 (840)
62 PF13041 PPR_2: PPR repeat fam 99.4 2.8E-12 6.1E-17 77.2 6.5 50 139-188 1-50 (50)
63 KOG0495 HAT repeat protein [RN 99.4 5.7E-09 1.2E-13 92.5 29.1 302 8-319 583-890 (913)
64 PRK11189 lipoprotein NlpI; Pro 99.3 2.3E-09 5E-14 91.3 25.2 217 54-278 40-270 (296)
65 KOG1840 Kinesin light chain [C 99.3 4.3E-10 9.4E-15 100.0 20.9 231 42-272 201-478 (508)
66 PRK11189 lipoprotein NlpI; Pro 99.3 7.5E-10 1.6E-14 94.2 20.6 213 89-309 40-267 (296)
67 KOG2076 RNA polymerase III tra 99.3 7.1E-09 1.5E-13 95.0 27.3 304 3-307 201-555 (895)
68 KOG1174 Anaphase-promoting com 99.3 3.7E-08 8.1E-13 82.9 27.9 306 14-352 199-519 (564)
69 PF12569 NARP1: NMDA receptor- 99.3 8.2E-09 1.8E-13 93.0 26.0 255 49-309 13-293 (517)
70 cd05804 StaR_like StaR_like; a 99.3 5.2E-08 1.1E-12 85.9 30.5 302 5-308 2-337 (355)
71 COG3063 PilF Tfp pilus assembl 99.2 8.4E-09 1.8E-13 80.1 21.3 190 42-236 37-231 (250)
72 KOG1915 Cell cycle control pro 99.2 4.9E-08 1.1E-12 83.6 27.6 346 6-357 171-592 (677)
73 COG3063 PilF Tfp pilus assembl 99.2 1.6E-08 3.6E-13 78.5 22.2 199 77-278 37-241 (250)
74 PF12569 NARP1: NMDA receptor- 99.2 4.5E-08 9.7E-13 88.3 28.5 288 11-305 6-332 (517)
75 KOG1125 TPR repeat-containing 99.2 1.3E-09 2.8E-14 95.2 16.3 252 84-354 294-558 (579)
76 KOG4162 Predicted calmodulin-b 99.2 1.5E-07 3.3E-12 85.2 29.0 299 7-307 321-783 (799)
77 PF04733 Coatomer_E: Coatomer 99.2 1.6E-09 3.4E-14 91.1 15.1 248 19-278 11-270 (290)
78 PF04733 Coatomer_E: Coatomer 99.2 2.6E-09 5.5E-14 89.8 16.2 245 48-307 9-265 (290)
79 KOG0624 dsRNA-activated protei 99.1 3.9E-07 8.4E-12 75.1 27.4 295 7-307 36-370 (504)
80 KOG1070 rRNA processing protei 99.1 3.2E-08 6.9E-13 94.7 20.9 201 107-311 1455-1667(1710)
81 KOG4340 Uncharacterized conser 99.1 7.9E-08 1.7E-12 77.6 20.0 284 12-303 13-335 (459)
82 KOG4318 Bicoid mRNA stability 99.0 5.2E-08 1.1E-12 89.4 20.1 203 6-227 22-286 (1088)
83 cd05804 StaR_like StaR_like; a 99.0 3.7E-06 8.1E-11 74.1 29.7 313 40-355 6-341 (355)
84 KOG3785 Uncharacterized conser 99.0 4.7E-07 1E-11 75.0 21.1 289 14-307 156-490 (557)
85 KOG1156 N-terminal acetyltrans 98.9 6.5E-06 1.4E-10 73.6 28.6 174 4-180 70-256 (700)
86 TIGR03302 OM_YfiO outer membra 98.9 2.2E-07 4.7E-12 76.7 18.4 182 108-307 31-232 (235)
87 KOG0624 dsRNA-activated protei 98.9 3.8E-06 8.3E-11 69.4 24.6 276 3-284 66-381 (504)
88 PRK10370 formate-dependent nit 98.9 2.1E-07 4.5E-12 74.0 16.9 118 189-308 52-174 (198)
89 KOG2047 mRNA splicing factor [ 98.9 5.8E-06 1.3E-10 73.9 26.6 288 9-302 102-535 (835)
90 PLN02789 farnesyltranstransfer 98.9 9.9E-07 2.1E-11 75.3 21.5 237 43-317 40-310 (320)
91 PRK14720 transcript cleavage f 98.9 1.4E-06 2.9E-11 82.9 23.9 236 5-289 27-268 (906)
92 KOG1125 TPR repeat-containing 98.9 4.7E-07 1E-11 79.6 18.6 249 48-301 293-565 (579)
93 KOG1128 Uncharacterized conser 98.8 3.3E-07 7.2E-12 82.6 17.7 212 79-308 402-617 (777)
94 KOG1128 Uncharacterized conser 98.8 2.9E-07 6.2E-12 83.0 17.2 190 105-309 393-584 (777)
95 KOG1156 N-terminal acetyltrans 98.8 8.6E-06 1.9E-10 72.8 26.0 282 22-310 54-437 (700)
96 PRK04841 transcriptional regul 98.8 6.1E-06 1.3E-10 82.2 28.6 296 13-308 413-761 (903)
97 KOG0548 Molecular co-chaperone 98.8 7.1E-06 1.5E-10 71.8 24.6 86 221-306 367-454 (539)
98 KOG2047 mRNA splicing factor [ 98.8 1.7E-05 3.6E-10 71.0 27.0 283 9-295 387-711 (835)
99 COG5010 TadD Flp pilus assembl 98.8 4.9E-07 1.1E-11 71.9 15.4 157 44-203 70-229 (257)
100 TIGR03302 OM_YfiO outer membra 98.8 1.2E-06 2.6E-11 72.3 18.7 182 72-275 30-234 (235)
101 PRK15359 type III secretion sy 98.8 4.4E-07 9.5E-12 68.3 14.5 122 162-289 14-137 (144)
102 PLN02789 farnesyltranstransfer 98.8 1.4E-05 3.1E-10 68.3 24.9 211 9-224 37-267 (320)
103 PRK15359 type III secretion sy 98.8 2.1E-07 4.5E-12 70.0 12.3 108 196-308 13-122 (144)
104 PRK15179 Vi polysaccharide bio 98.8 2.3E-06 5E-11 80.4 21.3 159 140-308 85-246 (694)
105 PF12854 PPR_1: PPR repeat 98.8 1.7E-08 3.6E-13 54.6 4.3 33 105-137 2-34 (34)
106 PRK10370 formate-dependent nit 98.8 2.2E-06 4.7E-11 68.2 18.1 154 117-281 23-181 (198)
107 KOG1070 rRNA processing protei 98.7 4.6E-06 1E-10 80.5 22.6 195 76-273 1459-1663(1710)
108 KOG3081 Vesicle coat complex C 98.7 5.9E-05 1.3E-09 60.4 24.4 251 17-278 16-276 (299)
109 COG5010 TadD Flp pilus assembl 98.7 4E-06 8.7E-11 66.9 17.7 155 145-302 70-226 (257)
110 KOG1914 mRNA cleavage and poly 98.7 0.00014 3E-09 64.1 28.0 117 192-310 347-467 (656)
111 KOG2376 Signal recognition par 98.7 8.5E-05 1.8E-09 66.0 26.9 77 225-302 320-400 (652)
112 PF12854 PPR_1: PPR repeat 98.7 4E-08 8.7E-13 53.1 4.3 32 207-238 2-33 (34)
113 KOG2376 Signal recognition par 98.7 5.4E-05 1.2E-09 67.2 25.6 144 157-304 357-517 (652)
114 PRK04841 transcriptional regul 98.6 0.0001 2.2E-09 73.5 30.6 290 18-307 383-720 (903)
115 KOG3060 Uncharacterized conser 98.6 3.5E-05 7.5E-10 61.3 20.5 192 90-284 27-231 (289)
116 COG4783 Putative Zn-dependent 98.6 4.3E-05 9.3E-10 66.4 22.5 119 185-305 315-435 (484)
117 KOG3081 Vesicle coat complex C 98.6 2.2E-05 4.8E-10 62.8 19.0 243 48-306 16-270 (299)
118 PRK15363 pathogenicity island 98.6 1.7E-06 3.6E-11 64.3 11.9 95 212-306 35-131 (157)
119 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 3.2E-06 7E-11 73.6 15.1 124 12-137 172-295 (395)
120 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 4.9E-06 1.1E-10 72.6 16.1 127 112-242 171-298 (395)
121 PRK15179 Vi polysaccharide bio 98.5 2.8E-05 6E-10 73.3 21.8 127 40-169 86-216 (694)
122 KOG0985 Vesicle coat protein c 98.5 7.2E-05 1.6E-09 70.5 23.7 243 39-304 1103-1367(1666)
123 KOG3617 WD40 and TPR repeat-co 98.5 3.6E-05 7.9E-10 70.9 21.3 280 8-304 756-1106(1416)
124 TIGR02552 LcrH_SycD type III s 98.5 2.9E-06 6.4E-11 63.3 12.0 94 213-306 18-113 (135)
125 KOG3617 WD40 and TPR repeat-co 98.5 3.7E-05 8E-10 70.9 19.7 240 8-272 725-995 (1416)
126 KOG4162 Predicted calmodulin-b 98.5 7.9E-05 1.7E-09 68.2 21.7 132 143-278 652-788 (799)
127 KOG1127 TPR repeat-containing 98.5 9.2E-06 2E-10 76.1 16.1 100 3-103 520-624 (1238)
128 TIGR02552 LcrH_SycD type III s 98.5 1.1E-05 2.3E-10 60.3 13.8 113 163-279 5-120 (135)
129 COG4783 Putative Zn-dependent 98.4 2.1E-05 4.5E-10 68.3 16.5 182 3-205 268-454 (484)
130 KOG3616 Selective LIM binding 98.4 9.9E-05 2.1E-09 67.4 21.2 135 117-269 739-875 (1636)
131 KOG3616 Selective LIM binding 98.4 6.9E-05 1.5E-09 68.4 20.2 169 81-268 738-906 (1636)
132 KOG0985 Vesicle coat protein c 98.4 0.00023 4.9E-09 67.3 23.2 237 38-302 982-1244(1666)
133 KOG3785 Uncharacterized conser 98.4 6.9E-05 1.5E-09 62.5 17.8 196 16-222 29-229 (557)
134 PRK14720 transcript cleavage f 98.4 0.00017 3.7E-09 69.1 22.7 220 39-310 30-255 (906)
135 KOG4340 Uncharacterized conser 98.4 1.5E-05 3.2E-10 64.8 13.4 197 113-315 13-215 (459)
136 KOG0548 Molecular co-chaperone 98.4 0.0002 4.4E-09 63.0 21.0 248 43-302 227-484 (539)
137 PF09976 TPR_21: Tetratricopep 98.3 5.7E-05 1.2E-09 57.0 14.8 122 43-166 15-143 (145)
138 KOG3060 Uncharacterized conser 98.3 0.00088 1.9E-08 53.5 21.2 186 53-242 25-222 (289)
139 TIGR00756 PPR pentatricopeptid 98.3 1.3E-06 2.8E-11 47.8 4.0 33 42-74 2-34 (35)
140 PF09976 TPR_21: Tetratricopep 98.3 4.7E-05 1E-09 57.4 13.5 83 219-302 55-142 (145)
141 TIGR00756 PPR pentatricopeptid 98.3 2.1E-06 4.5E-11 47.0 4.5 34 142-175 1-34 (35)
142 PF13812 PPR_3: Pentatricopept 98.2 1.8E-06 3.8E-11 46.9 3.9 33 41-73 2-34 (34)
143 KOG1127 TPR repeat-containing 98.2 0.00015 3.2E-09 68.4 18.2 178 126-304 474-656 (1238)
144 PF12895 Apc3: Anaphase-promot 98.2 1.7E-06 3.7E-11 58.5 4.4 76 226-302 3-82 (84)
145 TIGR02795 tol_pal_ybgF tol-pal 98.2 4.3E-05 9.4E-10 55.4 12.2 102 179-280 5-112 (119)
146 PF13812 PPR_3: Pentatricopept 98.2 3.1E-06 6.7E-11 46.0 4.5 33 142-174 2-34 (34)
147 cd00189 TPR Tetratricopeptide 98.2 2.9E-05 6.2E-10 53.4 10.3 92 215-306 3-96 (100)
148 KOG0550 Molecular chaperone (D 98.2 6.8E-05 1.5E-09 63.8 13.8 257 43-307 52-350 (486)
149 KOG2053 Mitochondrial inherita 98.2 0.0047 1E-07 58.0 26.5 215 19-238 19-252 (932)
150 TIGR02795 tol_pal_ybgF tol-pal 98.2 4.2E-05 9.1E-10 55.5 11.3 96 213-308 3-106 (119)
151 PF14938 SNAP: Soluble NSF att 98.1 0.00071 1.5E-08 57.3 19.1 211 24-248 30-272 (282)
152 PLN03088 SGT1, suppressor of 98.1 0.00011 2.5E-09 64.2 13.4 104 184-289 10-115 (356)
153 PF13414 TPR_11: TPR repeat; P 98.1 1.9E-05 4.1E-10 51.0 6.6 64 243-306 2-66 (69)
154 KOG2053 Mitochondrial inherita 98.1 0.0056 1.2E-07 57.6 24.1 222 51-277 20-259 (932)
155 PF05843 Suf: Suppressor of fo 98.0 0.00028 6E-09 59.6 14.9 134 142-278 2-141 (280)
156 PLN03088 SGT1, suppressor of 98.0 4.9E-05 1.1E-09 66.5 10.6 90 218-307 8-99 (356)
157 cd00189 TPR Tetratricopeptide 98.0 7.9E-05 1.7E-09 51.1 9.9 92 43-136 3-94 (100)
158 PRK02603 photosystem I assembl 98.0 0.0002 4.3E-09 55.8 13.0 93 39-132 34-128 (172)
159 PRK02603 photosystem I assembl 98.0 0.00015 3.3E-09 56.5 11.6 82 212-293 35-121 (172)
160 KOG0553 TPR repeat-containing 98.0 2.9E-05 6.3E-10 63.3 7.3 108 185-295 90-200 (304)
161 PRK15363 pathogenicity island 98.0 0.00025 5.5E-09 52.8 11.5 94 40-135 35-128 (157)
162 PF12895 Apc3: Anaphase-promot 97.9 4.2E-05 9E-10 51.6 6.8 80 154-237 2-83 (84)
163 PF12688 TPR_5: Tetratrico pep 97.9 0.00049 1.1E-08 49.4 12.3 103 46-149 7-114 (120)
164 PRK15331 chaperone protein Sic 97.9 0.00016 3.5E-09 54.2 10.1 91 216-306 41-133 (165)
165 CHL00033 ycf3 photosystem I as 97.9 0.00043 9.3E-09 53.7 13.1 81 40-121 35-117 (168)
166 PF13432 TPR_16: Tetratricopep 97.9 3.4E-05 7.5E-10 49.1 5.7 57 250-306 3-59 (65)
167 CHL00033 ycf3 photosystem I as 97.9 0.00021 4.5E-09 55.5 11.2 94 211-304 34-139 (168)
168 PRK10153 DNA-binding transcrip 97.9 0.00096 2.1E-08 61.2 16.9 59 245-304 421-479 (517)
169 PF01535 PPR: PPR repeat; Int 97.9 1.4E-05 3.1E-10 42.2 3.2 29 42-70 2-30 (31)
170 PF01535 PPR: PPR repeat; Int 97.9 1.9E-05 4.2E-10 41.7 3.5 29 143-171 2-30 (31)
171 COG4700 Uncharacterized protei 97.9 0.0047 1E-07 47.1 16.9 133 172-306 85-221 (251)
172 PF13432 TPR_16: Tetratricopep 97.9 6.6E-05 1.4E-09 47.8 6.4 61 218-278 3-65 (65)
173 PF08579 RPM2: Mitochondrial r 97.9 0.00032 6.9E-09 48.6 9.8 81 42-122 27-116 (120)
174 PRK10866 outer membrane biogen 97.8 0.0056 1.2E-07 50.4 18.7 184 38-238 30-238 (243)
175 PF10037 MRP-S27: Mitochondria 97.8 0.0002 4.4E-09 63.0 10.6 116 8-123 65-186 (429)
176 KOG0553 TPR repeat-containing 97.8 0.00025 5.3E-09 58.1 10.3 110 148-261 88-200 (304)
177 KOG1130 Predicted G-alpha GTPa 97.8 0.00025 5.4E-09 60.5 10.4 256 49-305 26-342 (639)
178 COG4235 Cytochrome c biogenesi 97.8 0.001 2.2E-08 54.8 13.7 105 209-313 153-262 (287)
179 PF08579 RPM2: Mitochondrial r 97.8 0.00046 9.9E-09 47.9 9.7 80 144-224 28-116 (120)
180 COG3898 Uncharacterized membra 97.8 0.019 4E-07 49.2 23.4 114 184-305 271-390 (531)
181 COG4700 Uncharacterized protei 97.8 0.0072 1.6E-07 46.1 16.6 99 72-170 86-189 (251)
182 PF14559 TPR_19: Tetratricopep 97.8 5.1E-05 1.1E-09 48.8 4.5 52 255-306 2-53 (68)
183 PF04840 Vps16_C: Vps16, C-ter 97.7 0.022 4.7E-07 48.9 26.1 110 178-304 179-288 (319)
184 KOG1914 mRNA cleavage and poly 97.7 0.0094 2E-07 53.1 19.1 148 56-204 347-500 (656)
185 PF14938 SNAP: Soluble NSF att 97.7 0.0041 8.9E-08 52.7 17.0 167 55-238 30-222 (282)
186 PF05843 Suf: Suppressor of fo 97.7 0.00078 1.7E-08 56.9 12.5 127 42-170 3-136 (280)
187 PF13281 DUF4071: Domain of un 97.7 0.0072 1.5E-07 52.3 18.1 163 111-276 142-337 (374)
188 PRK10866 outer membrane biogen 97.7 0.019 4.2E-07 47.3 21.8 177 74-271 31-239 (243)
189 PF10037 MRP-S27: Mitochondria 97.7 0.00077 1.7E-08 59.4 12.2 93 112-204 68-166 (429)
190 PF13371 TPR_9: Tetratricopept 97.7 0.00017 3.8E-09 47.0 6.4 56 252-307 3-58 (73)
191 PF06239 ECSIT: Evolutionarily 97.7 0.00078 1.7E-08 52.8 10.7 97 28-124 33-152 (228)
192 PRK10153 DNA-binding transcrip 97.6 0.0042 9E-08 57.1 16.6 70 175-247 419-489 (517)
193 PF13414 TPR_11: TPR repeat; P 97.6 0.0002 4.3E-09 46.1 5.5 65 211-275 2-69 (69)
194 PF12688 TPR_5: Tetratrico pep 97.6 0.0038 8.2E-08 44.9 12.3 93 146-238 6-101 (120)
195 PF14559 TPR_19: Tetratricopep 97.5 0.00052 1.1E-08 44.0 6.6 57 189-247 4-61 (68)
196 PRK10803 tol-pal system protei 97.5 0.0017 3.6E-08 54.0 10.9 82 223-304 154-243 (263)
197 PF06239 ECSIT: Evolutionarily 97.5 0.0023 5E-08 50.3 10.7 89 138-227 44-153 (228)
198 PF13525 YfiO: Outer membrane 97.5 0.035 7.7E-07 44.5 18.1 171 46-231 11-197 (203)
199 KOG2796 Uncharacterized conser 97.4 0.014 3E-07 47.2 14.7 128 43-170 180-315 (366)
200 PF13525 YfiO: Outer membrane 97.4 0.0057 1.2E-07 49.0 12.8 172 8-196 4-198 (203)
201 PF03704 BTAD: Bacterial trans 97.4 0.00095 2.1E-08 50.4 7.3 68 246-313 64-136 (146)
202 KOG1538 Uncharacterized conser 97.3 0.044 9.4E-07 50.1 17.9 239 11-271 558-844 (1081)
203 KOG2041 WD40 repeat protein [G 97.3 0.046 1E-06 50.4 18.2 128 25-166 679-821 (1189)
204 PRK10803 tol-pal system protei 97.3 0.01 2.2E-07 49.4 13.4 102 177-278 144-251 (263)
205 PF13371 TPR_9: Tetratricopept 97.3 0.0015 3.2E-08 42.5 6.6 62 220-281 3-66 (73)
206 PF13431 TPR_17: Tetratricopep 97.3 0.00031 6.7E-09 37.8 2.7 32 267-298 2-33 (34)
207 KOG2280 Vacuolar assembly/sort 97.3 0.12 2.6E-06 48.2 20.3 112 176-303 684-795 (829)
208 PF13428 TPR_14: Tetratricopep 97.2 0.00079 1.7E-08 38.8 4.4 42 245-286 2-43 (44)
209 KOG2796 Uncharacterized conser 97.2 0.028 6.1E-07 45.5 13.8 131 178-309 179-317 (366)
210 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.15 3.3E-06 44.8 24.7 126 178-305 399-529 (660)
211 COG4235 Cytochrome c biogenesi 97.2 0.034 7.4E-07 46.1 14.6 110 173-285 153-267 (287)
212 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0031 6.7E-08 55.4 8.8 97 211-310 74-177 (453)
213 PF12921 ATP13: Mitochondrial 97.1 0.008 1.7E-07 43.7 9.5 51 171-221 47-97 (126)
214 KOG2041 WD40 repeat protein [G 97.1 0.21 4.6E-06 46.3 20.1 202 5-238 688-904 (1189)
215 PF13424 TPR_12: Tetratricopep 97.1 0.00098 2.1E-08 44.1 4.3 60 43-102 8-73 (78)
216 KOG1130 Predicted G-alpha GTPa 97.1 0.02 4.3E-07 49.4 12.6 256 16-272 24-343 (639)
217 PF03704 BTAD: Bacterial trans 97.0 0.013 2.9E-07 44.1 10.8 104 9-113 3-139 (146)
218 PF04840 Vps16_C: Vps16, C-ter 97.0 0.19 4.1E-06 43.3 24.6 261 11-304 2-263 (319)
219 PF13512 TPR_18: Tetratricopep 97.0 0.041 8.8E-07 40.5 12.0 62 218-279 16-82 (142)
220 KOG0543 FKBP-type peptidyl-pro 97.0 0.015 3.3E-07 50.0 11.3 94 213-306 258-354 (397)
221 PF13424 TPR_12: Tetratricopep 96.9 0.0021 4.5E-08 42.5 4.9 60 246-305 7-73 (78)
222 COG3898 Uncharacterized membra 96.9 0.26 5.6E-06 42.6 27.4 249 42-301 84-352 (531)
223 PF10300 DUF3808: Protein of u 96.8 0.14 3.1E-06 46.8 17.0 159 145-306 192-375 (468)
224 KOG0550 Molecular chaperone (D 96.8 0.13 2.7E-06 44.7 14.9 152 83-238 177-347 (486)
225 PF09205 DUF1955: Domain of un 96.8 0.12 2.6E-06 37.2 14.0 141 151-310 12-152 (161)
226 PF08631 SPO22: Meiosis protei 96.7 0.29 6.4E-06 41.4 22.7 155 20-176 4-192 (278)
227 KOG0543 FKBP-type peptidyl-pro 96.7 0.021 4.6E-07 49.2 10.3 120 16-137 215-353 (397)
228 PF12921 ATP13: Mitochondrial 96.7 0.025 5.5E-07 41.1 9.4 99 8-122 1-100 (126)
229 PRK15331 chaperone protein Sic 96.7 0.052 1.1E-06 41.0 11.2 82 87-169 49-133 (165)
230 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.04 8.6E-07 48.7 12.1 65 5-69 71-141 (453)
231 PF13281 DUF4071: Domain of un 96.6 0.23 5.1E-06 43.3 15.7 166 39-204 140-333 (374)
232 PF13512 TPR_18: Tetratricopep 96.5 0.12 2.7E-06 38.0 11.8 93 185-278 19-133 (142)
233 KOG2610 Uncharacterized conser 96.2 0.072 1.6E-06 44.8 10.2 156 152-310 114-279 (491)
234 KOG1941 Acetylcholine receptor 96.1 0.17 3.7E-06 43.2 12.0 46 51-96 17-64 (518)
235 KOG2610 Uncharacterized conser 96.1 0.22 4.8E-06 42.1 12.5 182 120-304 113-312 (491)
236 COG0457 NrfG FOG: TPR repeat [ 96.0 0.62 1.3E-05 37.5 25.8 222 53-276 36-268 (291)
237 COG3118 Thioredoxin domain-con 96.0 0.77 1.7E-05 38.3 15.8 145 150-296 143-290 (304)
238 smart00299 CLH Clathrin heavy 96.0 0.44 9.6E-06 35.5 14.4 126 144-289 10-136 (140)
239 COG1729 Uncharacterized protei 96.0 0.092 2E-06 43.0 9.6 100 178-278 144-249 (262)
240 KOG1538 Uncharacterized conser 96.0 0.64 1.4E-05 43.0 15.6 207 12-238 601-843 (1081)
241 KOG3941 Intermediate in Toll s 95.9 0.085 1.8E-06 43.3 9.2 98 28-125 53-173 (406)
242 PF04053 Coatomer_WDAD: Coatom 95.9 0.4 8.7E-06 43.3 14.1 159 48-239 269-429 (443)
243 COG0457 NrfG FOG: TPR repeat [ 95.8 0.75 1.6E-05 37.0 26.3 218 88-307 36-265 (291)
244 PRK11906 transcriptional regul 95.8 0.89 1.9E-05 40.6 15.7 144 56-201 274-432 (458)
245 COG1729 Uncharacterized protei 95.8 0.26 5.6E-06 40.5 11.7 86 153-238 153-241 (262)
246 KOG3941 Intermediate in Toll s 95.8 0.13 2.9E-06 42.2 9.8 98 130-228 54-174 (406)
247 PF10300 DUF3808: Protein of u 95.7 1.2 2.7E-05 40.8 16.9 157 80-238 193-373 (468)
248 COG4649 Uncharacterized protei 95.6 0.58 1.3E-05 35.7 11.6 137 38-175 57-201 (221)
249 PRK11906 transcriptional regul 95.6 1.3 2.8E-05 39.6 15.7 158 142-302 252-431 (458)
250 KOG2114 Vacuolar assembly/sort 95.6 2.3 5E-05 40.7 17.8 174 13-203 338-517 (933)
251 KOG1585 Protein required for f 95.5 1 2.2E-05 36.5 16.2 85 215-300 153-249 (308)
252 COG3629 DnrI DNA-binding trans 95.5 0.1 2.2E-06 43.5 8.3 60 246-305 155-214 (280)
253 PF07719 TPR_2: Tetratricopept 95.5 0.061 1.3E-06 28.5 4.9 32 246-277 3-34 (34)
254 smart00299 CLH Clathrin heavy 95.5 0.74 1.6E-05 34.2 14.8 42 81-123 13-54 (140)
255 PF00515 TPR_1: Tetratricopept 95.4 0.044 9.6E-07 29.2 4.2 32 245-276 2-33 (34)
256 KOG2280 Vacuolar assembly/sort 95.4 2.5 5.4E-05 40.0 20.5 283 12-304 440-770 (829)
257 KOG4555 TPR repeat-containing 95.3 0.29 6.4E-06 35.3 8.9 50 186-237 53-102 (175)
258 PRK09687 putative lyase; Provi 95.3 1.6 3.4E-05 37.0 25.5 242 29-289 26-278 (280)
259 COG4105 ComL DNA uptake lipopr 95.3 1.4 2.9E-05 36.1 16.1 178 111-307 36-233 (254)
260 PF04184 ST7: ST7 protein; In 95.2 2.2 4.8E-05 38.5 16.1 145 45-203 173-322 (539)
261 PF09205 DUF1955: Domain of un 95.2 0.81 1.8E-05 33.2 11.3 63 144-208 89-151 (161)
262 COG5107 RNA14 Pre-mRNA 3'-end 95.2 2.1 4.6E-05 38.0 19.3 135 140-277 396-535 (660)
263 COG3118 Thioredoxin domain-con 95.0 1.8 3.9E-05 36.2 17.2 117 83-203 142-263 (304)
264 COG4649 Uncharacterized protei 95.0 0.68 1.5E-05 35.3 10.5 49 224-272 144-195 (221)
265 KOG4555 TPR repeat-containing 95.0 0.34 7.4E-06 35.0 8.4 88 149-238 51-141 (175)
266 KOG1920 IkappaB kinase complex 95.0 3.4 7.4E-05 41.3 17.5 112 116-238 914-1025(1265)
267 PF02259 FAT: FAT domain; Int 95.0 2.4 5.1E-05 37.2 18.2 263 15-291 4-305 (352)
268 KOG1941 Acetylcholine receptor 94.9 2.2 4.8E-05 36.8 17.2 194 10-203 44-273 (518)
269 PF13428 TPR_14: Tetratricopep 94.8 0.086 1.9E-06 30.1 4.4 28 42-69 3-30 (44)
270 PF04184 ST7: ST7 protein; In 94.8 3 6.5E-05 37.7 17.8 100 179-278 262-380 (539)
271 PF04053 Coatomer_WDAD: Coatom 94.7 0.65 1.4E-05 42.0 11.8 133 9-166 295-427 (443)
272 KOG4234 TPR repeat-containing 94.7 0.16 3.5E-06 39.5 6.7 51 254-304 144-194 (271)
273 PF13431 TPR_17: Tetratricopep 94.6 0.034 7.5E-07 29.7 2.2 27 3-29 7-33 (34)
274 KOG1585 Protein required for f 94.5 2.1 4.6E-05 34.8 16.4 26 42-67 33-58 (308)
275 PF02259 FAT: FAT domain; Int 94.5 3.1 6.8E-05 36.5 18.0 68 242-309 144-215 (352)
276 PF10602 RPN7: 26S proteasome 94.4 1.5 3.2E-05 34.3 11.8 96 143-238 38-139 (177)
277 KOG1464 COP9 signalosome, subu 94.3 2.2 4.7E-05 35.2 12.6 47 90-136 42-91 (440)
278 PF13176 TPR_7: Tetratricopept 94.3 0.09 1.9E-06 28.5 3.5 24 43-66 2-25 (36)
279 PF13170 DUF4003: Protein of u 94.2 1.6 3.4E-05 37.3 12.3 127 91-220 78-225 (297)
280 KOG1258 mRNA processing protei 94.1 4.7 0.0001 37.2 18.5 127 3-130 291-420 (577)
281 KOG2114 Vacuolar assembly/sort 94.1 2.8 6.1E-05 40.2 14.5 177 78-270 337-516 (933)
282 COG4105 ComL DNA uptake lipopr 94.0 2.9 6.2E-05 34.3 20.1 55 50-104 44-100 (254)
283 PF13176 TPR_7: Tetratricopept 94.0 0.15 3.3E-06 27.6 4.0 24 144-167 2-25 (36)
284 COG3629 DnrI DNA-binding trans 93.8 0.86 1.9E-05 38.1 9.8 76 42-118 155-235 (280)
285 PF10602 RPN7: 26S proteasome 93.7 1.2 2.5E-05 34.8 9.9 92 213-304 37-139 (177)
286 PF02284 COX5A: Cytochrome c o 93.7 0.57 1.2E-05 32.1 6.9 62 157-220 26-87 (108)
287 TIGR02561 HrpB1_HrpK type III 93.6 0.63 1.4E-05 34.5 7.7 69 225-293 23-93 (153)
288 cd00923 Cyt_c_Oxidase_Va Cytoc 93.6 0.69 1.5E-05 31.4 7.1 63 156-220 22-84 (103)
289 PF08631 SPO22: Meiosis protei 93.5 4.1 8.9E-05 34.5 24.7 19 51-69 4-22 (278)
290 PF13181 TPR_8: Tetratricopept 93.5 0.22 4.7E-06 26.3 4.1 30 246-275 3-32 (34)
291 KOG0276 Vesicle coat complex C 93.5 2.3 5.1E-05 39.2 12.4 150 121-303 597-746 (794)
292 PF09613 HrpB1_HrpK: Bacterial 93.4 0.81 1.7E-05 34.6 8.1 82 214-295 9-95 (160)
293 PRK11619 lytic murein transgly 93.3 8 0.00017 37.1 27.1 267 24-305 81-373 (644)
294 PF07035 Mic1: Colon cancer-as 93.1 3.2 6.9E-05 31.9 13.2 134 60-203 14-147 (167)
295 PF07079 DUF1347: Protein of u 92.9 6.6 0.00014 35.1 25.6 116 186-304 389-521 (549)
296 PF14432 DYW_deaminase: DYW fa 92.8 0.13 2.9E-06 36.8 3.2 45 314-370 2-46 (116)
297 COG4785 NlpI Lipoprotein NlpI, 92.6 4.5 9.8E-05 32.3 14.7 180 19-205 75-266 (297)
298 PF00515 TPR_1: Tetratricopept 92.5 0.24 5.3E-06 26.1 3.4 27 42-68 3-29 (34)
299 KOG0890 Protein kinase of the 92.4 19 0.00042 39.3 22.5 66 243-310 1669-1734(2382)
300 KOG4648 Uncharacterized conser 92.3 0.35 7.6E-06 41.0 5.5 108 183-297 104-214 (536)
301 PF00637 Clathrin: Region in C 92.3 0.2 4.3E-06 37.5 3.9 85 46-137 13-97 (143)
302 KOG3364 Membrane protein invol 92.2 2.4 5.2E-05 31.0 8.7 21 284-304 77-97 (149)
303 COG3947 Response regulator con 92.1 6.5 0.00014 33.0 16.0 58 248-305 283-340 (361)
304 PF13374 TPR_10: Tetratricopep 92.0 0.48 1E-05 26.3 4.5 27 246-272 4-30 (42)
305 PF13174 TPR_6: Tetratricopept 91.5 0.55 1.2E-05 24.4 4.0 27 250-276 6-32 (33)
306 PF07035 Mic1: Colon cancer-as 91.4 5.3 0.00012 30.6 15.4 23 216-238 93-115 (167)
307 PF07079 DUF1347: Protein of u 91.3 11 0.00023 33.9 21.2 115 19-137 16-155 (549)
308 TIGR02561 HrpB1_HrpK type III 91.1 5.1 0.00011 29.9 11.8 66 86-152 21-87 (153)
309 KOG4234 TPR repeat-containing 91.1 5.9 0.00013 31.2 10.4 99 186-286 105-210 (271)
310 PF07719 TPR_2: Tetratricopept 91.0 0.44 9.5E-06 25.0 3.4 27 42-68 3-29 (34)
311 COG4785 NlpI Lipoprotein NlpI, 91.0 7 0.00015 31.3 14.1 177 89-274 79-267 (297)
312 KOG1586 Protein required for f 90.9 7.6 0.00016 31.5 13.8 60 218-277 119-187 (288)
313 PF14853 Fis1_TPR_C: Fis1 C-te 90.7 2.4 5.2E-05 25.4 6.6 50 281-356 4-53 (53)
314 KOG1258 mRNA processing protei 90.6 14 0.00031 34.2 26.3 103 188-293 378-490 (577)
315 cd00923 Cyt_c_Oxidase_Va Cytoc 90.4 2.7 5.8E-05 28.6 7.0 59 58-117 25-83 (103)
316 PF00637 Clathrin: Region in C 90.0 0.16 3.6E-06 38.0 1.4 85 81-168 13-97 (143)
317 PF11207 DUF2989: Protein of u 89.9 5 0.00011 31.7 9.3 67 93-160 124-197 (203)
318 KOG4570 Uncharacterized conser 89.8 1.6 3.5E-05 36.7 6.9 48 56-103 116-163 (418)
319 PF07721 TPR_4: Tetratricopept 89.8 0.5 1.1E-05 23.3 2.6 23 280-302 3-25 (26)
320 KOG4642 Chaperone-dependent E3 89.7 1.2 2.6E-05 35.9 5.9 84 186-272 20-106 (284)
321 TIGR02508 type_III_yscG type I 89.7 2.5 5.4E-05 29.0 6.5 83 24-113 20-105 (115)
322 KOG1920 IkappaB kinase complex 89.6 25 0.00055 35.6 18.0 80 218-304 971-1052(1265)
323 PRK15180 Vi polysaccharide bio 89.6 7.2 0.00016 35.2 11.0 123 185-309 298-422 (831)
324 PF02284 COX5A: Cytochrome c o 89.5 3.5 7.6E-05 28.4 7.1 60 58-118 28-87 (108)
325 PF09613 HrpB1_HrpK: Bacterial 89.4 7.9 0.00017 29.4 13.7 53 85-138 20-72 (160)
326 PF13374 TPR_10: Tetratricopep 89.2 0.8 1.7E-05 25.3 3.6 26 42-67 4-29 (42)
327 KOG4570 Uncharacterized conser 89.0 9.1 0.0002 32.5 10.6 46 191-237 115-160 (418)
328 COG1747 Uncharacterized N-term 88.3 20 0.00044 32.8 21.9 175 109-290 65-251 (711)
329 PF11207 DUF2989: Protein of u 88.0 6.3 0.00014 31.2 8.7 21 211-231 177-197 (203)
330 KOG2396 HAT (Half-A-TPR) repea 87.9 21 0.00045 32.5 18.4 99 174-275 457-562 (568)
331 PF07721 TPR_4: Tetratricopept 87.6 1.3 2.8E-05 21.8 3.3 22 12-33 4-25 (26)
332 PF13181 TPR_8: Tetratricopept 87.5 1.4 3.1E-05 23.0 3.7 28 279-306 2-29 (34)
333 PF14853 Fis1_TPR_C: Fis1 C-te 87.5 1.2 2.6E-05 26.6 3.6 32 249-280 6-37 (53)
334 COG2976 Uncharacterized protei 87.3 13 0.00027 29.3 13.9 114 159-275 70-190 (207)
335 KOG4648 Uncharacterized conser 87.2 2.5 5.4E-05 36.1 6.5 93 148-244 104-198 (536)
336 COG1747 Uncharacterized N-term 87.2 24 0.00051 32.4 19.3 59 43-104 69-127 (711)
337 COG2976 Uncharacterized protei 86.8 14 0.00029 29.2 14.7 53 149-203 134-186 (207)
338 PF13174 TPR_6: Tetratricopept 86.8 1.1 2.3E-05 23.2 2.9 28 280-307 2-29 (33)
339 PRK09687 putative lyase; Provi 86.3 19 0.00042 30.5 28.4 217 72-306 34-262 (280)
340 KOG4507 Uncharacterized conser 86.1 7.5 0.00016 36.0 9.2 97 188-287 619-719 (886)
341 PRK13800 putative oxidoreducta 86.1 42 0.0009 34.1 25.6 257 27-305 622-879 (897)
342 smart00028 TPR Tetratricopepti 86.0 2.2 4.7E-05 21.2 4.0 29 247-275 4-32 (34)
343 PRK10941 hypothetical protein; 85.7 6.6 0.00014 32.9 8.4 60 247-306 184-243 (269)
344 KOG0276 Vesicle coat complex C 85.7 13 0.00028 34.6 10.5 100 51-167 648-747 (794)
345 PF10579 Rapsyn_N: Rapsyn N-te 85.2 3.3 7.2E-05 27.0 4.9 47 188-234 18-65 (80)
346 KOG1464 COP9 signalosome, subu 85.0 21 0.00046 29.7 17.6 258 5-269 22-328 (440)
347 KOG2300 Uncharacterized conser 84.8 31 0.00067 31.4 15.2 152 149-302 331-509 (629)
348 PF04097 Nic96: Nup93/Nic96; 84.8 21 0.00045 34.3 12.2 21 222-242 515-535 (613)
349 TIGR02508 type_III_yscG type I 84.6 11 0.00023 26.0 9.0 85 91-179 21-105 (115)
350 PRK15180 Vi polysaccharide bio 84.4 7.7 0.00017 35.0 8.4 122 151-276 299-423 (831)
351 KOG4077 Cytochrome c oxidase, 84.4 7.3 0.00016 28.1 6.7 59 159-219 67-125 (149)
352 COG4455 ImpE Protein of avirul 84.0 6.4 0.00014 31.5 7.0 72 215-286 4-80 (273)
353 KOG2422 Uncharacterized conser 83.5 27 0.00058 32.5 11.5 119 188-306 250-406 (665)
354 PF10345 Cohesin_load: Cohesin 83.3 45 0.00097 32.1 22.9 262 40-302 59-428 (608)
355 TIGR03504 FimV_Cterm FimV C-te 83.1 2.8 6E-05 23.9 3.6 27 282-308 3-29 (44)
356 PF13762 MNE1: Mitochondrial s 82.9 15 0.00032 27.5 8.2 81 43-123 42-128 (145)
357 TIGR03504 FimV_Cterm FimV C-te 82.6 3.7 8.1E-05 23.4 3.9 23 147-169 5-27 (44)
358 PF04910 Tcf25: Transcriptiona 82.5 35 0.00075 30.3 12.8 64 243-306 99-167 (360)
359 KOG0545 Aryl-hydrocarbon recep 82.2 22 0.00048 29.2 9.4 88 219-306 185-292 (329)
360 COG3947 Response regulator con 82.0 12 0.00027 31.4 8.1 57 44-101 283-339 (361)
361 cd08819 CARD_MDA5_2 Caspase ac 81.7 13 0.00028 24.9 7.2 66 94-161 21-86 (88)
362 PF08311 Mad3_BUB1_I: Mad3/BUB 81.6 16 0.00034 26.6 8.0 42 262-303 81-124 (126)
363 PF06552 TOM20_plant: Plant sp 81.6 23 0.00049 27.6 10.0 44 260-310 96-139 (186)
364 KOG1550 Extracellular protein 80.9 52 0.0011 31.2 22.9 269 25-306 228-537 (552)
365 PF09986 DUF2225: Uncharacteri 80.6 14 0.00029 29.9 8.1 63 246-308 120-195 (214)
366 PF10345 Cohesin_load: Cohesin 80.2 58 0.0012 31.4 17.2 178 94-272 40-253 (608)
367 PF07163 Pex26: Pex26 protein; 79.9 28 0.0006 29.2 9.4 19 185-203 127-145 (309)
368 KOG4279 Serine/threonine prote 79.6 44 0.00095 32.3 11.6 184 92-278 180-400 (1226)
369 KOG1586 Protein required for f 78.9 34 0.00074 27.9 14.5 87 190-276 128-227 (288)
370 smart00386 HAT HAT (Half-A-TPR 78.8 5.2 0.00011 20.3 3.7 30 258-287 1-30 (33)
371 PRK12798 chemotaxis protein; R 78.0 51 0.0011 29.5 20.9 180 123-305 125-322 (421)
372 COG2909 MalT ATP-dependent tra 78.0 76 0.0016 31.4 21.2 194 118-315 423-655 (894)
373 PF06552 TOM20_plant: Plant sp 77.9 8.9 0.00019 29.7 5.8 33 260-292 51-83 (186)
374 PF04190 DUF410: Protein of un 77.9 40 0.00088 28.2 19.0 158 21-205 2-170 (260)
375 PF07163 Pex26: Pex26 protein; 76.8 42 0.00091 28.2 9.6 23 12-34 38-60 (309)
376 KOG1308 Hsp70-interacting prot 76.8 2.1 4.6E-05 36.5 2.5 88 224-311 126-215 (377)
377 PF11846 DUF3366: Domain of un 76.1 18 0.00038 28.7 7.5 37 239-275 139-175 (193)
378 PF08424 NRDE-2: NRDE-2, neces 76.1 52 0.0011 28.6 12.8 127 229-366 48-179 (321)
379 PF13170 DUF4003: Protein of u 75.4 52 0.0011 28.2 19.2 145 157-303 78-242 (297)
380 KOG4507 Uncharacterized conser 75.0 16 0.00035 34.0 7.5 84 224-307 619-705 (886)
381 KOG2066 Vacuolar assembly/sort 74.9 86 0.0019 30.6 12.5 27 280-306 507-533 (846)
382 PF11846 DUF3366: Domain of un 74.8 17 0.00036 28.8 7.1 51 188-238 120-170 (193)
383 PF14561 TPR_20: Tetratricopep 74.8 11 0.00023 25.6 5.1 39 267-305 11-49 (90)
384 KOG3364 Membrane protein invol 74.7 24 0.00052 26.0 6.9 71 209-279 29-106 (149)
385 PF09477 Type_III_YscG: Bacter 74.1 27 0.00059 24.4 9.0 78 90-170 21-98 (116)
386 KOG0403 Neoplastic transformat 74.1 68 0.0015 29.0 15.9 101 247-355 512-616 (645)
387 PRK10941 hypothetical protein; 74.0 25 0.00054 29.6 8.0 66 216-281 185-252 (269)
388 KOG1550 Extracellular protein 73.8 83 0.0018 29.9 17.5 177 91-274 228-427 (552)
389 PF04097 Nic96: Nup93/Nic96; 73.2 91 0.002 30.1 15.3 61 9-70 112-182 (613)
390 KOG2471 TPR repeat-containing 72.5 71 0.0015 29.3 10.6 104 118-224 248-381 (696)
391 PF10366 Vps39_1: Vacuolar sor 72.5 29 0.00062 24.5 6.9 27 143-169 41-67 (108)
392 PF09670 Cas_Cas02710: CRISPR- 72.3 72 0.0016 28.5 12.4 53 151-204 141-197 (379)
393 KOG0687 26S proteasome regulat 71.8 66 0.0014 27.8 12.5 94 177-272 105-209 (393)
394 PF10579 Rapsyn_N: Rapsyn N-te 70.7 12 0.00027 24.4 4.3 46 153-198 18-65 (80)
395 KOG0686 COP9 signalosome, subu 70.7 79 0.0017 28.2 13.6 57 12-68 153-215 (466)
396 KOG3807 Predicted membrane pro 70.3 71 0.0015 27.6 13.9 53 186-238 285-337 (556)
397 KOG4077 Cytochrome c oxidase, 69.0 42 0.0009 24.4 7.0 40 98-137 72-111 (149)
398 PF10366 Vps39_1: Vacuolar sor 67.8 35 0.00075 24.1 6.5 27 42-68 41-67 (108)
399 PF13929 mRNA_stabil: mRNA sta 67.7 76 0.0016 26.9 17.7 114 125-238 143-264 (292)
400 PF11768 DUF3312: Protein of u 67.7 99 0.0022 28.9 10.8 23 115-137 413-435 (545)
401 KOG0376 Serine-threonine phosp 67.7 4 8.6E-05 36.6 2.2 95 182-279 10-107 (476)
402 PF00244 14-3-3: 14-3-3 protei 67.3 70 0.0015 26.4 10.4 58 45-102 6-64 (236)
403 PF10255 Paf67: RNA polymerase 67.2 37 0.0008 30.4 8.0 56 113-168 125-191 (404)
404 COG4455 ImpE Protein of avirul 67.0 67 0.0015 26.1 12.3 75 143-221 3-81 (273)
405 PF04762 IKI3: IKI3 family; I 66.7 1.6E+02 0.0034 30.2 17.1 52 2-53 681-745 (928)
406 PF09373 PMBR: Pseudomurein-bi 66.7 13 0.00029 19.5 3.3 27 337-363 7-33 (33)
407 COG2909 MalT ATP-dependent tra 66.0 1.5E+02 0.0032 29.6 25.8 216 85-303 425-684 (894)
408 PF14689 SPOB_a: Sensor_kinase 66.0 13 0.00027 23.1 3.6 24 145-168 27-50 (62)
409 PF11663 Toxin_YhaV: Toxin wit 65.7 7.9 0.00017 28.3 3.0 22 53-74 108-129 (140)
410 KOG2396 HAT (Half-A-TPR) repea 65.0 1.2E+02 0.0025 28.1 21.9 238 58-304 300-556 (568)
411 PF14689 SPOB_a: Sensor_kinase 64.9 8.1 0.00017 24.0 2.6 23 80-102 28-50 (62)
412 KOG0551 Hsp90 co-chaperone CNS 64.5 45 0.00098 28.8 7.5 86 218-303 87-178 (390)
413 PF12069 DUF3549: Protein of u 64.4 98 0.0021 27.0 12.7 133 15-149 172-306 (340)
414 PF12862 Apc5: Anaphase-promot 63.9 34 0.00074 23.2 5.9 53 254-306 8-69 (94)
415 KOG3824 Huntingtin interacting 63.8 23 0.0005 30.1 5.7 48 255-302 127-174 (472)
416 PRK10564 maltose regulon perip 63.7 14 0.0003 31.3 4.5 29 43-71 260-288 (303)
417 PF14863 Alkyl_sulf_dimr: Alky 63.4 57 0.0012 24.3 7.2 63 228-293 57-119 (141)
418 KOG0686 COP9 signalosome, subu 63.1 1.1E+02 0.0025 27.3 12.9 25 144-168 153-177 (466)
419 KOG2066 Vacuolar assembly/sort 62.3 1.6E+02 0.0035 28.8 20.2 31 111-141 506-536 (846)
420 KOG2062 26S proteasome regulat 61.9 1.6E+02 0.0035 28.7 12.5 250 51-304 368-632 (929)
421 KOG2063 Vacuolar assembly/sort 61.9 1.8E+02 0.0039 29.3 19.1 27 42-68 506-532 (877)
422 PF08967 DUF1884: Domain of un 61.8 11 0.00024 24.6 2.7 29 335-363 5-33 (85)
423 KOG4814 Uncharacterized conser 61.4 1.2E+02 0.0026 29.0 10.1 86 222-307 364-457 (872)
424 KOG4642 Chaperone-dependent E3 61.4 92 0.002 25.7 10.1 112 151-267 20-140 (284)
425 PF04190 DUF410: Protein of un 61.4 98 0.0021 26.0 15.7 159 122-307 2-170 (260)
426 PF12862 Apc5: Anaphase-promot 60.9 50 0.0011 22.4 7.3 23 250-272 47-69 (94)
427 COG0735 Fur Fe2+/Zn2+ uptake r 60.9 66 0.0014 24.1 7.3 62 62-124 8-69 (145)
428 PF11838 ERAP1_C: ERAP1-like C 60.0 1.1E+02 0.0025 26.3 17.6 110 192-302 146-261 (324)
429 KOG4521 Nuclear pore complex, 59.6 2.2E+02 0.0048 29.5 13.1 120 78-198 986-1124(1480)
430 PF04910 Tcf25: Transcriptiona 59.4 1.3E+02 0.0028 26.7 15.2 58 147-204 109-167 (360)
431 PF11848 DUF3368: Domain of un 59.4 33 0.00071 19.9 5.0 32 51-82 13-44 (48)
432 cd00280 TRFH Telomeric Repeat 59.3 68 0.0015 25.2 7.0 61 192-252 85-151 (200)
433 PF13762 MNE1: Mitochondrial s 59.2 74 0.0016 23.9 10.4 76 114-189 43-128 (145)
434 PHA02875 ankyrin repeat protei 59.2 1.4E+02 0.003 27.0 10.8 135 17-160 7-151 (413)
435 KOG4567 GTPase-activating prot 58.8 1.2E+02 0.0026 26.1 10.3 42 162-203 264-305 (370)
436 smart00777 Mad3_BUB1_I Mad3/BU 58.0 67 0.0015 23.4 6.6 40 263-302 82-123 (125)
437 PRK13800 putative oxidoreducta 57.6 2.3E+02 0.0049 29.0 27.0 249 5-272 631-880 (897)
438 PF11663 Toxin_YhaV: Toxin wit 57.3 16 0.00035 26.7 3.3 35 150-186 104-138 (140)
439 PRK14700 recombination factor 55.7 1.3E+02 0.0029 25.7 9.4 36 89-124 140-175 (300)
440 PRK10564 maltose regulon perip 55.7 29 0.00063 29.5 5.0 37 144-180 260-296 (303)
441 PF08311 Mad3_BUB1_I: Mad3/BUB 55.6 78 0.0017 23.0 8.9 43 93-135 81-124 (126)
442 KOG2063 Vacuolar assembly/sort 54.2 2.5E+02 0.0054 28.4 21.1 112 11-122 506-638 (877)
443 COG5191 Uncharacterized conser 53.9 34 0.00074 29.2 5.1 79 208-286 103-184 (435)
444 KOG0991 Replication factor C, 53.2 1.3E+02 0.0028 24.8 9.9 33 241-274 236-268 (333)
445 COG2912 Uncharacterized conser 52.8 70 0.0015 26.8 6.7 57 250-306 187-243 (269)
446 PF11817 Foie-gras_1: Foie gra 52.6 61 0.0013 26.9 6.6 50 217-266 183-240 (247)
447 KOG0292 Vesicle coat complex C 52.2 2.3E+02 0.0049 28.5 10.6 132 117-272 650-781 (1202)
448 COG5108 RPO41 Mitochondrial DN 52.2 99 0.0022 29.7 8.1 47 146-192 33-81 (1117)
449 KOG1308 Hsp70-interacting prot 52.1 13 0.00028 32.0 2.5 87 21-109 126-216 (377)
450 COG5108 RPO41 Mitochondrial DN 50.7 1.3E+02 0.0027 29.0 8.5 71 14-87 33-115 (1117)
451 PF09670 Cas_Cas02710: CRISPR- 50.3 1.9E+02 0.0041 25.9 11.4 52 51-103 142-197 (379)
452 KOG0890 Protein kinase of the 50.3 4.3E+02 0.0093 30.0 20.9 259 11-274 1422-1732(2382)
453 KOG2659 LisH motif-containing 50.2 1.4E+02 0.003 24.4 8.0 93 43-135 29-128 (228)
454 PF10255 Paf67: RNA polymerase 49.7 57 0.0012 29.3 6.1 62 177-238 123-190 (404)
455 PF09454 Vps23_core: Vps23 cor 49.5 38 0.00082 21.3 3.7 32 74-105 7-38 (65)
456 PF11838 ERAP1_C: ERAP1-like C 49.2 1.7E+02 0.0037 25.1 16.5 30 175-204 200-229 (324)
457 KOG1839 Uncharacterized protei 48.9 2.2E+02 0.0047 29.8 10.4 160 120-279 942-1139(1236)
458 PF07720 TPR_3: Tetratricopept 48.9 43 0.00093 18.0 4.9 18 249-266 6-23 (36)
459 PRK11639 zinc uptake transcrip 48.0 1.2E+02 0.0025 23.5 7.0 59 67-126 18-76 (169)
460 PRK13342 recombination factor 47.8 2.2E+02 0.0047 25.9 15.2 13 123-135 187-199 (413)
461 COG4976 Predicted methyltransf 47.1 31 0.00068 28.1 3.7 56 223-278 6-63 (287)
462 cd08326 CARD_CASP9 Caspase act 46.7 86 0.0019 20.9 6.2 38 122-159 42-79 (84)
463 COG5159 RPN6 26S proteasome re 46.0 1.9E+02 0.0041 24.7 13.2 51 82-132 10-67 (421)
464 PRK11639 zinc uptake transcrip 45.8 1.1E+02 0.0023 23.7 6.5 61 167-229 17-77 (169)
465 cd08326 CARD_CASP9 Caspase act 45.8 40 0.00087 22.5 3.6 62 29-94 19-80 (84)
466 PF11817 Foie-gras_1: Foie gra 45.6 1.2E+02 0.0025 25.3 7.2 76 229-304 162-244 (247)
467 KOG0292 Vesicle coat complex C 44.9 28 0.00061 34.2 3.7 99 187-303 654-752 (1202)
468 cd07153 Fur_like Ferric uptake 44.2 84 0.0018 22.2 5.5 45 46-90 6-50 (116)
469 COG2256 MGS1 ATPase related to 44.2 2.4E+02 0.0053 25.4 11.3 46 79-124 250-298 (436)
470 PF14561 TPR_20: Tetratricopep 44.2 99 0.0021 20.9 8.4 50 107-156 19-73 (90)
471 COG0735 Fur Fe2+/Zn2+ uptake r 43.7 1.4E+02 0.003 22.4 7.6 63 28-90 8-70 (145)
472 cd07153 Fur_like Ferric uptake 43.7 66 0.0014 22.7 4.9 44 148-191 7-50 (116)
473 COG4259 Uncharacterized protei 43.6 99 0.0021 21.4 5.1 22 114-135 76-97 (121)
474 PF06957 COPI_C: Coatomer (COP 43.2 1.8E+02 0.0039 26.4 8.2 109 151-277 214-333 (422)
475 KOG0376 Serine-threonine phosp 43.0 66 0.0014 29.3 5.5 87 47-137 11-99 (476)
476 PF09454 Vps23_core: Vps23 cor 43.0 41 0.00088 21.1 3.1 51 36-87 4-54 (65)
477 COG0790 FOG: TPR repeat, SEL1 42.7 2.1E+02 0.0045 24.2 19.1 50 258-310 205-269 (292)
478 PF00356 LacI: Bacterial regul 42.4 29 0.00063 20.0 2.3 16 344-359 31-46 (46)
479 PF10475 DUF2450: Protein of u 42.1 1.3E+02 0.0029 25.7 7.2 115 182-303 104-222 (291)
480 KOG0545 Aryl-hydrocarbon recep 41.7 2.1E+02 0.0045 23.9 9.1 86 117-203 185-291 (329)
481 COG4976 Predicted methyltransf 41.2 79 0.0017 25.9 5.1 57 185-243 4-61 (287)
482 KOG2297 Predicted translation 40.2 2.4E+02 0.0053 24.3 10.4 16 247-262 324-339 (412)
483 PF12968 DUF3856: Domain of Un 40.2 1.4E+02 0.0031 21.6 9.8 61 212-272 55-128 (144)
484 PF12796 Ank_2: Ankyrin repeat 39.8 83 0.0018 20.6 4.7 15 19-33 4-18 (89)
485 PF13646 HEAT_2: HEAT repeats; 39.7 1.1E+02 0.0023 20.0 7.7 62 37-103 11-72 (88)
486 PF01475 FUR: Ferric uptake re 38.9 60 0.0013 23.2 4.0 45 146-190 12-56 (120)
487 TIGR01503 MthylAspMut_E methyl 38.6 69 0.0015 29.1 4.9 62 295-364 151-215 (480)
488 PF14044 NETI: NETI protein 37.8 26 0.00055 21.1 1.5 17 344-360 10-26 (57)
489 KOG4279 Serine/threonine prote 37.7 4.2E+02 0.0091 26.3 11.7 94 41-137 202-314 (1226)
490 PF01475 FUR: Ferric uptake re 37.6 82 0.0018 22.5 4.6 45 45-89 12-56 (120)
491 TIGR02270 conserved hypothetic 36.8 3.3E+02 0.0071 24.8 25.2 237 44-304 42-278 (410)
492 KOG1498 26S proteasome regulat 36.8 3.1E+02 0.0068 24.6 13.6 189 123-312 25-246 (439)
493 KOG4521 Nuclear pore complex, 36.6 5.3E+02 0.011 27.1 15.8 117 179-300 986-1124(1480)
494 COG5187 RPN7 26S proteasome re 35.0 2.9E+02 0.0063 23.7 7.7 110 198-308 60-185 (412)
495 PF15297 CKAP2_C: Cytoskeleton 34.9 2.2E+02 0.0048 25.0 7.2 48 228-275 119-171 (353)
496 PHA02875 ankyrin repeat protei 34.8 3.4E+02 0.0074 24.4 10.0 197 50-267 9-222 (413)
497 PF02847 MA3: MA3 domain; Int 34.6 80 0.0017 22.1 4.1 24 15-38 8-31 (113)
498 KOG0889 Histone acetyltransfer 34.6 9E+02 0.019 29.2 16.1 87 219-305 2743-2839(3550)
499 PF12926 MOZART2: Mitotic-spin 34.5 1.4E+02 0.0031 20.0 7.6 41 96-136 29-69 (88)
500 PF09868 DUF2095: Uncharacteri 34.2 1.7E+02 0.0037 20.8 5.2 35 81-116 67-101 (128)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-63 Score=469.34 Aligned_cols=365 Identities=33% Similarity=0.589 Sum_probs=358.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
.+|..+||+++++|++.|++++|.++|+.|.++|..+||+++.+|++.|++++|+++|++|.+.|+.||..||++++.+|
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 165 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 165 (372)
++.|++++|.+++..|.+.|++|+..+|+.|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH
Q 017414 166 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAA 245 (372)
Q Consensus 166 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (372)
+|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|+.++++|++.|++++|.+++++++..|+..
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~ 495 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH
Confidence 99999999999999999999999999999999999999878999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEE
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVH 325 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~ 325 (372)
+|+.|+.+|...|+++.|..+++++.++.|.+..+|..|+.+|.+.|+|++|.++++.|++.|+.+.|+++|+++.+.+|
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~ 575 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH 575 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHcCccccccccccccCCC
Q 017414 326 EFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESDVA 370 (372)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~~~~~~ 370 (372)
.|+.++.+||+.+++++.+.++...|++.|+.||...++++++++
T Consensus 576 ~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~ 620 (697)
T PLN03081 576 SFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDED 620 (697)
T ss_pred EEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHH
Confidence 999999999999999999999999999999999999999999864
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-58 Score=447.50 Aligned_cols=362 Identities=38% Similarity=0.710 Sum_probs=352.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
..||..+||+++++|++.|++++|.++|++|.++|..+||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999986 589999999999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMF 164 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 164 (372)
|++.|+.+.+.+++..+.+.|+.++..+++.|+++|+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|+++|
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH
Q 017414 165 SRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA 244 (372)
Q Consensus 165 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (372)
++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|+.++++|++.|++++|.+++++|+++||.
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~ 657 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP 657 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCH
Confidence 99999999999999999999999999999999999999977799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEE
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRV 324 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~ 324 (372)
.+|++|+.+|...|+.+.++...+++.++.|+++..|..|...|...|+|++|.++.+.|++.|+++.|+++||++++.+
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~ 737 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKV 737 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHHcCccccccccccccCC
Q 017414 325 HEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESDV 369 (372)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~~~~~ 369 (372)
|.|+.++.+||+.++++..++++...|++.|+.||....+ +++|
T Consensus 738 ~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~ 781 (857)
T PLN03077 738 HAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIE 781 (857)
T ss_pred EEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccH
Confidence 9999999999999999999999999999999999988766 4443
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-52 Score=399.68 Aligned_cols=347 Identities=18% Similarity=0.235 Sum_probs=319.0
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC----CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
+..||..+|+.++.+|++.|+++.|.++|+.|.+ ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 432 M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred cCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3458999999999999999999999999999975 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc------cCCcchHHHHHHHHHh
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK------NKSVITWTTMIAGLAL 153 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~ 153 (372)
.++.+|++.|++++|.++|+.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+++|.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995 4788999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 017414 154 HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 233 (372)
.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.++++|++.|++++|.+
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999976 999999999999999999999999999
Q ss_pred HHhhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC-CCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 234 LLRRM---PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE-PHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 234 ~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
++++| +..||..+|+.+|.+|++.|++++|.++|++|.+.+ .++..+|+.|+.+|.+.|++++|.++|++|...|+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999 788999999999999999999999999999998754 34778999999999999999999999999999999
Q ss_pred ccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccccccc
Q 017414 310 KKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSG 363 (372)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~ 363 (372)
.|+..++.. ++.++...++.+++...+ +.|.+.|+.||..++
T Consensus 751 ~Pd~~Ty~s--------LL~a~~k~G~le~A~~l~----~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 751 CPNTITYSI--------LLVASERKDDADVGLDLL----SQAKEDGIKPNLVMC 792 (1060)
T ss_pred CCCHHHHHH--------HHHHHHHCCCHHHHHHHH----HHHHHcCCCCCHHHH
Confidence 987765543 244566677777777554 789999999998655
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-51 Score=390.93 Aligned_cols=347 Identities=17% Similarity=0.261 Sum_probs=325.5
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
.+++..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+
T Consensus 402 v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~ 481 (1060)
T PLN03218 402 LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481 (1060)
T ss_pred CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCcchHHHHHHHHHhcCChhHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK----NKSVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a 160 (372)
|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|
T Consensus 482 y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999996 47899999999999999999999
Q ss_pred HHHHHHHHH--cCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 161 LDMFSRMER--ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 161 ~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+. ++.|+..+|+.+|.+|++.|++++|.++|++|
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999986 678999999999999999999999999999999976 99999999999999999999999999999999
Q ss_pred ---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC-CCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCc
Q 017414 239 ---PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE-PHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPG 314 (372)
Q Consensus 239 ---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 314 (372)
++.||..+|+.++.+|.+.|++++|.++++.|.+.+ +++..+|+.|+.+|.+.|++++|.++|++|...|+.|+..
T Consensus 641 ~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv 720 (1060)
T PLN03218 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 789999999999999999999999999999999966 4578899999999999999999999999999999988764
Q ss_pred eeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCccccccccc
Q 017414 315 CSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGV 364 (372)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~ 364 (372)
... .++.++...++.+++.+.+ +.|++.|+.||..++.
T Consensus 721 tyN--------~LI~gy~k~G~~eeAlelf----~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 721 TMN--------ALITALCEGNQLPKALEVL----SEMKRLGLCPNTITYS 758 (1060)
T ss_pred HHH--------HHHHHHHHCCCHHHHHHHH----HHHHHcCCCCCHHHHH
Confidence 432 3466777888999998766 7799999999988764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-50 Score=381.79 Aligned_cols=341 Identities=25% Similarity=0.350 Sum_probs=315.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
.||..+||.++.+|++.|++++|.++|++|.+||..+||+++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 165 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 165 (372)
++.|..+.+.+++..+.+.|+.|+..+|+.|+++|++.|++++|.++|++|.++|..+||++|.+|++.|++++|+++|+
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH
Q 017414 166 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAA 245 (372)
Q Consensus 166 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (372)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|+.|+++|++.|++++|.++|++|. +||..
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~ 392 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLI 392 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCee
Confidence 9999999999999999999999999999999999999966 999999999999999999999999999999996 58999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhC-CCCcchHHHHHHHHHHcCCchhHHHHHHHHHh-CCCccCCceeEEEeCCE
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLE-PHNSGNYAILSNIYAILGRWNESGKIRKVMRD-MGVKKMPGCSYIEVSKR 323 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~~~~~~ 323 (372)
+|+.+|.+|++.|+.++|.++|++|.+.+ .++..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+...+.
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~------ 466 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA------ 466 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH------
Confidence 99999999999999999999999999855 34778999999999999999999999999975 68887654433
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccccccc
Q 017414 324 VHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSG 363 (372)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~ 363 (372)
.++.+....+..+++.+.+ ++.++.||..++
T Consensus 467 --~li~~l~r~G~~~eA~~~~-------~~~~~~p~~~~~ 497 (697)
T PLN03081 467 --CMIELLGREGLLDEAYAMI-------RRAPFKPTVNMW 497 (697)
T ss_pred --hHHHHHHhcCCHHHHHHHH-------HHCCCCCCHHHH
Confidence 2344555677777777554 334667776543
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.7e-50 Score=389.61 Aligned_cols=355 Identities=24% Similarity=0.406 Sum_probs=321.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
.||+.+||+++.+|++.|++++|.++|++|.++|..+||++|.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 165 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 165 (372)
++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|++++|+++|+
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH
Q 017414 166 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAA 245 (372)
Q Consensus 166 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (372)
+|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+. |+.|+..+|+.|+++|++.|++++|.++|++|. ++|..
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~v 456 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVI 456 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCee
Confidence 9999999999999999999999999999999999999966 999999999999999999999999999999996 57999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCC---
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSK--- 322 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~--- 322 (372)
+|+.++.+|...|+.++|..+|++|.+..+++..+|..++.+|.+.|+.+.+.+++..|...|+.++.......+..
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 99999999999999999999999998755557778888888888888888888888888887776554322111100
Q ss_pred -------------------EEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCccccccccccc
Q 017414 323 -------------------RVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLE 366 (372)
Q Consensus 323 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~~ 366 (372)
....++.++..+++.+++.+.+ +.|.+.|+.||.+++..-
T Consensus 537 ~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf----~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 537 CGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELF----NRMVESGVNPDEVTFISL 595 (857)
T ss_pred cCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCCCcccHHHH
Confidence 0012355566788888887655 779999999999998543
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.3e-23 Score=187.10 Aligned_cols=298 Identities=14% Similarity=0.075 Sum_probs=248.3
Q ss_pred HHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccC
Q 017414 16 VAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD---EIAMLAALSACAQLG 89 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~ 89 (372)
...+...|++++|+..|.++.+ | +..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4456788999999999999986 3 456889999999999999999999999987542222 246788899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc--------chHHHHHHHHHhcCChhHHH
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV--------ITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~ 161 (372)
+++.|..+|+.+.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+. ..+..++..+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999864 56678899999999999999999999999875322 24556777889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 017414 162 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 240 (372)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~ 240 (372)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .......++..++.+|...|++++|...++++ ..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998864 334567778889999999999999999999853 21122466788999999999999999999998 55
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH---cCCchhHHHHHHHHHhCCCccCCceeE
Q 017414 241 EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI---LGRWNESGKIRKVMRDMGVKKMPGCSY 317 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~ 317 (372)
.|+...+..++..+...|++++|..+++++.+..|+++ .+..++..+.. .|+.+++..++++|...++.+.|.+.-
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence 68777788889999999999999999999999999765 66666666554 568999999999999999999887543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=8.9e-23 Score=200.99 Aligned_cols=297 Identities=12% Similarity=0.054 Sum_probs=187.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAAL 82 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 82 (372)
+.+...+..++..|.+.|++++|..+++.+.+ .+...|..++.++...|++++|+..|+++.+.. +.+...+..+.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 33444444555555555555555555555442 234455555555555555555555555555432 22344455555
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhH
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 159 (372)
.++.+.|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 55555556666665555555543 33445555555666666666666666655543 233455666666677777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-
Q 017414 160 ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM- 238 (372)
Q Consensus 160 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~- 238 (372)
|.+.|+++...+ |+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..+...|...|++++|...|+++
T Consensus 722 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 722 AIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 777777766653 3335556666777777777777777777764 33456677777777777888888888888776
Q ss_pred CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 239 PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 239 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
.. .++...+..+...+...|+ ++|...++++.+..|.++..+..++.++...|++++|.+.++++.+.+.
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22 3356677777777777777 7788888888887787777778888888888888888888888876554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=2.3e-22 Score=198.02 Aligned_cols=297 Identities=14% Similarity=0.069 Sum_probs=264.8
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
...+.+..+|..+...|.+.|++++|...|+.+.+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 34577889999999999999999999999999865 356789999999999999999999999998863 45678899
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCCh
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLG 157 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 157 (372)
.+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.|+++.+ |+..++..++.++.+.|++
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 99999999999999999999999876 66778888899999999999999999998864 5557788899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
++|.+.++++.+.. +.+...+..+...|...|++++|..+|+++.+ ..+.++..+..+...+...|+ .+|+..+++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 99999999999874 45778888999999999999999999999996 346678889999999999999 889999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 238 M-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 238 ~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+ ...| +..++..+...+...|++++|...++++.+.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7 4344 556677888899999999999999999999999999999999999999999999999999885
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=9.6e-21 Score=168.76 Aligned_cols=267 Identities=13% Similarity=0.106 Sum_probs=225.4
Q ss_pred cccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-CC------hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC
Q 017414 2 FTLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE-KN------VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 74 (372)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 74 (372)
....|.+..++..+...+.+.|++++|..+++.+.. ++ ...+..++..|.+.|++++|+.+|+++.+.. +++
T Consensus 62 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~ 140 (389)
T PRK11788 62 LKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFA 140 (389)
T ss_pred HhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cch
Confidence 345677888999999999999999999999998876 22 2467889999999999999999999998753 456
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHH
Q 017414 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI----VPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTM 147 (372)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 147 (372)
..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++|...|+++.+. +..++..+
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 220 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL 220 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence 78899999999999999999999999988653332 224566788899999999999999998642 35578889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 227 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 227 (372)
+..+.+.|++++|.++++++...+......++..++.+|...|++++|...++.+.+. .|+...+..++..+.+.|+
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCC
Confidence 9999999999999999999998643333467788999999999999999999999853 5676677889999999999
Q ss_pred HHHHHHHHhhC-CCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHH
Q 017414 228 LQEAEKLLRRM-PFEANAAIWGSLLAASNI---YGDVELGECALQHLIK 272 (372)
Q Consensus 228 ~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 272 (372)
+++|..+++++ ...|+...+..++..+.. .|+.+++..+++++.+
T Consensus 298 ~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 298 PEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999999987 667999999988887664 4588999999998887
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=4.3e-19 Score=166.22 Aligned_cols=297 Identities=8% Similarity=-0.067 Sum_probs=203.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
.+.+...+..++..+...|++++|+..|+++.+ | +...+..+...+...|++++|+..|+++.+.. +.+...+..+
T Consensus 72 ~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~l 150 (656)
T PRK15174 72 AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALH 150 (656)
T ss_pred CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 344455555666666778888888888877765 3 44567777777778888888888888777642 2345566677
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC----cchHHHHHHHHHhcCCh
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS----VITWTTMIAGLALHGLG 157 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 157 (372)
..++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++++.+.+ ...+..+..++...|++
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence 777778888888888777776554 2233333333 33677788888888877765432 22344455677778888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHH----HHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 017414 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVEL----GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 233 (372)
++|+..+++..+.. +.+...+..+...+...|++++ |...|+++.+. .+.+...+..+...+...|++++|..
T Consensus 229 ~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 229 QEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888888877654 3345566667777777787775 67777777742 23345677777788888888888888
Q ss_pred HHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 234 LLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 234 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.+++. ...| +...+..+..++...|++++|...++++.+..|.++..+..++.++...|++++|...|++....
T Consensus 306 ~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 306 LLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 87776 3344 34456666777778888888888888888777776655555677778888888888888777554
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=7.4e-19 Score=164.64 Aligned_cols=291 Identities=11% Similarity=-0.039 Sum_probs=226.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
...++..+.+.|++++|..+++.... | +...+..++.+....|++++|++.|+++.+.. +.+...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 34566777888999999999888765 3 45566667777788899999999999988753 33566777788888899
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-cchHHHHHHHHHhcCChhHHHHHHH
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KS-VITWTTMIAGLALHGLGREALDMFS 165 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 165 (372)
|++++|...++.+.+.. +.+...+..++.++...|++++|...++++.. |+ ...+..+ ..+.+.|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999888864 55677788888889999999999998887643 32 2333333 34778899999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH----HHHHHhhC-CC
Q 017414 166 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE----AEKLLRRM-PF 240 (372)
Q Consensus 166 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~-~~ 240 (372)
.+......++......+..++.+.|++++|...++.+... .+.+...+..+...|...|++++ |...|++. ..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 8877643344445555667788889999999999988853 34456777888888999998885 78888887 44
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 241 EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 241 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.| +...+..+...+...|++++|...++++.+..|.++.++..++.++.+.|++++|...++++...
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55 45678888888899999999999999999999988888888899999999999999988888654
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=7.4e-18 Score=158.17 Aligned_cols=249 Identities=13% Similarity=0.031 Sum_probs=184.0
Q ss_pred CccHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 017414 55 QPNEAITLFRRMQVEN-VKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 132 (372)
Q Consensus 55 ~~~~A~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 132 (372)
++++|++.|++..+.+ ..| ....+..+...+...|++++|...++...+.. +.....|..+..++...|++++|...
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555432 123 23456666667777888888888888887753 33456777788888888888888888
Q ss_pred HHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCC
Q 017414 133 FENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE 209 (372)
Q Consensus 133 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 209 (372)
|++..+ .+..+|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+...+ ..+
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P 464 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFP 464 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCC
Confidence 887654 345688888888888999999999998888763 23456666777888888999999999998885 334
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-H-------HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 210 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-A-------IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
.+...+..+..++...|++++|...|++. ...|+. . .++.....+...|++++|...++++.+++|.+..+
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a 544 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIA 544 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 45778888889999999999999998886 333321 1 11222223334689999999999999999988888
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 281 YAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+..++.++...|++++|.+.|++....
T Consensus 545 ~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999887543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=8.4e-19 Score=152.07 Aligned_cols=292 Identities=15% Similarity=0.125 Sum_probs=247.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML-AAL 82 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~l~ 82 (372)
.-..+|+.+...+...|++++|+..++.+.+ | .+..|..+..++...|+.+.|.+.|.+.++ +.|+..... .+.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lg 191 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLG 191 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchh
Confidence 3467899999999999999999999999876 3 567899999999999999999999999987 467655443 444
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc---chHHHHHHHHHhcCChhH
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 159 (372)
..+...|++.+|...|.+.++.. +--...|+.|...+-..|+...|++.|++..+-|+ .+|-.|...|...+.+++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 55666789999999998888763 33467788999999999999999999999886544 589999999999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 160 ALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 160 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
|...|.+.... .|+ ...+..+...|-..|+.+.|+..|++..+ +.|+ +..|+.|..++-..|++.+|.+.|.+
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 99999987765 444 56778888888999999999999999984 3554 68899999999999999999999988
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 238 M-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 238 ~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
. ...| .....+.|...+...|.++.|..+|..+.+..|.-..+++.|+..|..+|+.++|+..|++...
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 7 4455 3557888999999999999999999999999998888999999999999999999999987643
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=3.2e-17 Score=153.89 Aligned_cols=292 Identities=13% Similarity=0.024 Sum_probs=236.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
.+......+.+.|++++|+..|++..+ |+...|..+..+|.+.|++++|++.+++.++.. +.+...|..+..++...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 355778889999999999999999875 788889999999999999999999999999853 33566888899999999
Q ss_pred CChHHHHHHHHHHHHcC-----------------------------CCCchhHHHHHHH---------------------
Q 017414 89 GAVELGEWIHNYIEQYG-----------------------------LNTIVPLNNALID--------------------- 118 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~--------------------- 118 (372)
|++++|...+..+...+ .+++...+..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 99999987654433211 0111001110100
Q ss_pred ---------HH------HhcCCHHHHHHHHHhcccC------CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H
Q 017414 119 ---------MY------AKSGKIGKALQVFENMKNK------SVITWTTMIAGLALHGLGREALDMFSRMERARVKPN-E 176 (372)
Q Consensus 119 ---------~~------~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~ 176 (372)
.+ ...+++++|.+.|++..+. ....|+.+...+...|++++|+..|++..+. .|+ .
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence 00 1235788999999887642 3357888889999999999999999999886 344 5
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 254 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 254 (372)
..|..+...+...|++++|...|+.+.+. .+.+...|..+...+...|++++|...|++. ...| +...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 67888888899999999999999999853 3446788999999999999999999999998 5556 566778888899
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
...|++++|+..++++.+..|.++.++..++.++...|++++|.+.|++....
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999987654
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=9.4e-19 Score=151.76 Aligned_cols=299 Identities=14% Similarity=0.130 Sum_probs=227.9
Q ss_pred cccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCCh-------------------------------------hhHH
Q 017414 2 FTLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNV-------------------------------------ISWT 44 (372)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------------------------------~~~~ 44 (372)
+++.+..+..|..+..++...|+.+.|.+.|.+..+-|+ ..|+
T Consensus 143 iel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaws 222 (966)
T KOG4626|consen 143 IELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWS 222 (966)
T ss_pred HhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeeh
Confidence 567778888888888889999998888888877654211 2355
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (372)
.|...+-.+|+...|++.|++.++. .|+ ...|..|.+.|...+.++.|...|.+..... +....++..+...|...
T Consensus 223 nLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 223 NLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQ 299 (966)
T ss_pred hcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEecc
Confidence 5555555666666666666666653 343 4466667777777777777777776666543 33455566666677777
Q ss_pred CCHHHHHHHHHhcccCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHH
Q 017414 124 GKIGKALQVFENMKNKS---VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN 200 (372)
Q Consensus 124 g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 200 (372)
|.+|-|+..|++..+.+ ..+|+.|..++-..|+..+|.+.|.+.+... +.-....+.|...|.+.|.++.|..+|.
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~ 378 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYL 378 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHH
Confidence 77777777777765422 3688999999999999999999999888763 2345677788889999999999999998
Q ss_pred HhHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 201 IMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 201 ~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
...+ +.|. ...++.|...|-++|++++|+..|++. .++|+. ..++.+...|-..|+.+.|.+.+.+++..+|.-
T Consensus 379 ~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 379 KALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 8883 3444 467788999999999999999999887 777864 578888889999999999999999999999988
Q ss_pred cchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 278 SGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 278 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
..++..|+..|...|+..+|++-|++....
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 888999999999999999999999887554
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=8.9e-17 Score=160.53 Aligned_cols=196 Identities=12% Similarity=0.060 Sum_probs=92.2
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh---hhHH------------HHHHHHHhCCCccHHHHHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--KNV---ISWT------------TLIAGYAQMDQPNEAITLFRRM 66 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~------------~l~~~~~~~~~~~~A~~~~~~m 66 (372)
..|.|..++..+...|.+.|++++|+..|++..+ |+. ..|. .....+.+.|++++|+..|+++
T Consensus 298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455566666666666666666666666666543 211 1111 1123455566666666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC------
Q 017414 67 QVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS------ 140 (372)
Q Consensus 67 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 140 (372)
.+.. +.+...+..+..++...|++++|.+.|+++.+.. +.+...+..+...|. .++.++|..+++.+....
T Consensus 378 l~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 378 RQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence 6542 2344455556666666666666666666666543 222333333333321 112222222222221100
Q ss_pred ------cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 141 ------VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 141 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
...+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0011222333444555555555555555432 1123334444455555555555555555544
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.80 E-value=8.1e-16 Score=153.75 Aligned_cols=299 Identities=12% Similarity=-0.004 Sum_probs=191.6
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHH--------------------------------
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIA-------------------------------- 48 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~-------------------------------- 48 (372)
+.|.+...+..+..++...|++++|++.|++..+ | +...+..+..
T Consensus 380 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 380 VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3455666666677777777777777777776654 2 2222222222
Q ss_pred ----------HHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 49 ----------GYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 49 ----------~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
.+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|...++.+.+.. +.+...+..+..
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al 537 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGL 537 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 2333455555555555555432 1123344445555555555555555555554432 223333333333
Q ss_pred HHHhcCCHHHHHHHHHhcccCCc-------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017414 119 MYAKSGKIGKALQVFENMKNKSV-------------ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 185 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 185 (372)
.+...|+.++|...++++..... ..+..+...+...|++++|.++++. .+++...+..+...
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHH
Confidence 44445555555555554432110 0112334556667777777777661 23455566778889
Q ss_pred hcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 017414 186 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELG 263 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 263 (372)
+.+.|++++|...|+.+.+. -+.+...+..++..|...|++++|++.++.+ ...| +...+..+..++...|++++|
T Consensus 613 ~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999953 3456788899999999999999999999988 4445 455677778888999999999
Q ss_pred HHHHHHHHHhCCCCc------chHHHHHHHHHHcCCchhHHHHHHHHH-hCCCcc
Q 017414 264 ECALQHLIKLEPHNS------GNYAILSNIYAILGRWNESGKIRKVMR-DMGVKK 311 (372)
Q Consensus 264 ~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~ 311 (372)
.++++++....|.++ .++..++..+...|++++|.+.|++.. ..|+.|
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 999999998776544 356667889999999999999998874 345543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=2.7e-15 Score=143.71 Aligned_cols=299 Identities=12% Similarity=0.027 Sum_probs=196.6
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
.+.+...+..+...+.+.|++++|..+|++..+ | +...+..++.++...|++++|+..++++.+.. +.+.. +..+
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~l 122 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLAL 122 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHH
Confidence 455566788888888888888888888888654 3 45667777788888888888888888887752 33445 7777
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----------------------
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----------------------- 138 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------- 138 (372)
..++...|+.++|...++++.+.. |.+...+..+..++...|..++|++.++....
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 778888888888888888888764 44555555566666666666555544442211
Q ss_pred --------------------------CCcch---HH----HHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 017414 139 --------------------------KSVIT---WT----TMIAGLALHGLGREALDMFSRMERARVK-PNEITFIAILS 184 (372)
Q Consensus 139 --------------------------~~~~~---~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~ 184 (372)
.++.. +. ..+.++...|++++|+..|+++.+.+.+ |+. ....+..
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~ 280 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVAS 280 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 01110 00 0022345667788888888887776432 332 2222456
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-------------C---HH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEP--KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-------------N---AA 245 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-------------~---~~ 245 (372)
+|...|++++|..+|+.+.......+ .......+..++...|++++|..+++++ ...| + ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 77778888888888887764211110 1234555666777888888888887776 2222 2 12
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.+..+...+...|+.++|+..++++....|.++..+..++..+...|++++|++.+++....
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 34455567777788888888888887777877777778888888888888888877766553
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=3.5e-15 Score=142.93 Aligned_cols=303 Identities=9% Similarity=-0.012 Sum_probs=228.0
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
.+.|.+...+..++..+...|++++|+..+++..+ | +.. +..+..++...|++++|+..++++.+.. +-+...+.
T Consensus 77 ~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~ 154 (765)
T PRK10049 77 SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPT 154 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 45677888888999999999999999999999875 3 455 8888999999999999999999999853 23444555
Q ss_pred HHHHHHHccCChHHHH----------------------------------------------HHHHHHHHc-CCCCchh-
Q 017414 80 AALSACAQLGAVELGE----------------------------------------------WIHNYIEQY-GLNTIVP- 111 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~----------------------------------------------~~~~~~~~~-~~~~~~~- 111 (372)
.+..++...+..+.|. ..++.+.+. ...|+..
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 5666665555555443 333344432 1122211
Q ss_pred HH----HHHHHHHHhcCCHHHHHHHHHhcccCC---c-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHH
Q 017414 112 LN----NALIDMYAKSGKIGKALQVFENMKNKS---V-ITWTTMIAGLALHGLGREALDMFSRMERARVKP---NEITFI 180 (372)
Q Consensus 112 ~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~ 180 (372)
.+ ...+..+...|++++|+..|+++.+.+ + .....+..+|...|++++|+..|+++.+..... ......
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 11 111334567799999999999998643 2 122335778999999999999999988653211 124455
Q ss_pred HHHHHhcccCchHHHHHHHHHhHHhcC----------CCcC---HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHH
Q 017414 181 AILSACCHVGLVELGRRYFNIMKSRYG----------IEPK---IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAA 245 (372)
Q Consensus 181 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~ 245 (372)
.+..++...|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +..
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~ 394 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG 394 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 666778999999999999999985310 0122 234566778899999999999999998 3344 667
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.+..+...+...|++++|++.++++.++.|+++..+..++..+...|++++|..+++++...
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999998653
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=4.7e-18 Score=143.97 Aligned_cols=256 Identities=16% Similarity=0.128 Sum_probs=111.4
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (372)
.+...+.+.|++++|++++.+......+|+ ...|..+...+...++.+.|...++++.+.+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 446777788888888888865544332343 4444555666777888889998888888765 3356667767777 688
Q ss_pred CCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcccCchHHHHHHHH
Q 017414 124 GKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAILSACCHVGLVELGRRYFN 200 (372)
Q Consensus 124 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 200 (372)
+++++|.+++++.-+ ++...+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 889999888876533 456677788888899999999999999877543 34566778888888999999999999999
Q ss_pred HhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 201 IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
++.+. .+.+......++..+...|+.+++.++++.. ....|+..+..+..++...|+.++|...+++..+..|.|+
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99953 2335778888999999999999988888776 2234566788899999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 279 GNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
.....++.++...|+.++|.++.++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988765
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.74 E-value=2.4e-14 Score=137.97 Aligned_cols=294 Identities=13% Similarity=0.036 Sum_probs=201.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-C-----ChhhHHHHHHHHHhCCC---ccHHHHH---------------
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTE-K-----NVISWTTLIAGYAQMDQ---PNEAITL--------------- 62 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~---~~~A~~~--------------- 62 (372)
.+....-.+.....++|+.++|.++|+.... + +...-+-|+..|.+.+. ..+++.+
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 3444555555566778888888888887765 1 22234456666666655 2233222
Q ss_pred -------HHHHHhC-CC-CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 017414 63 -------FRRMQVE-NV-KP--DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 131 (372)
Q Consensus 63 -------~~~m~~~-~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 131 (372)
+...... +. ++ +...|..+..++.. ++.++|...+....... |+......+...+...|++++|..
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHH
Confidence 1111111 11 23 56667777777666 77777888777776653 444444444555568888888888
Q ss_pred HHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCC
Q 017414 132 VFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE 209 (372)
Q Consensus 132 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 209 (372)
.|+++.. ++...+..+..++.+.|++++|...+++..+.+ ++....+..+.......|++++|...+++..+ ..
T Consensus 531 ~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~ 606 (987)
T PRK09782 531 AWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IA 606 (987)
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hC
Confidence 8887653 344456666777888888888888888887764 22233333333444556888888888888883 35
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 210 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
|+...+..+..++.+.|++++|...+++. ...| +...+..+..++...|++++|+..++++.+..|.++..+..++.+
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~a 686 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYV 686 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67778888888888888888888888887 4455 455667777788888888888888888888888888888888888
Q ss_pred HHHcCCchhHHHHHHHHHhC
Q 017414 288 YAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~ 307 (372)
+...|++++|...+++....
T Consensus 687 l~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 687 NQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhc
Confidence 88888888888888877543
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=3e-14 Score=137.24 Aligned_cols=263 Identities=11% Similarity=0.014 Sum_probs=216.5
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
+...|..+..++.. +++.+|+..|.+.... .|+......+...+...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45678888888776 8999999988888774 477655555566667999999999999997664 455555667888
Q ss_pred HHHhcCCHHHHHHHHHhcccCCcchHHHHH---HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHH
Q 017414 119 MYAKSGKIGKALQVFENMKNKSVITWTTMI---AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 195 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 195 (372)
++.+.|+.++|...|++..+.++....... ....+.|++++|...+++..+. .|+...+..+..++.+.|++++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999988765544443333 3344559999999999999986 46778888999999999999999
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 196 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
...+++... .-+.+...+..+..++...|++++|+..+++. ...| +...+..+..++...|++++|+..++++.++
T Consensus 629 ~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999995 33445678888999999999999999999988 4455 6678889999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 274 EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 274 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
.|++..+....+....+..+++.|.+.+++--...+.
T Consensus 707 ~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 707 IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999988876544443
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=4.5e-14 Score=125.17 Aligned_cols=285 Identities=11% Similarity=0.089 Sum_probs=218.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHhccCCC--Chhh-HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH--HHHHH
Q 017414 12 WNTMVAGYAK--VGDLNNARALFELMTEK--NVIS-WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML--AALSA 84 (372)
Q Consensus 12 ~~~l~~~~~~--~~~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~ 84 (372)
+..+..+... .|++++|++.+....+. ++.. |-.......+.|+++.|.+.+.++.+. .|+..... .....
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l 162 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHH
Confidence 3334444443 59999999999877653 2333 433355558899999999999999874 56654333 34677
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc-----------chHHHHHHHHHh
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV-----------ITWTTMIAGLAL 153 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~ 153 (372)
+...|+++.|...++.+.+.. |.+..+...+...|.+.|++++|.+++..+.+... .+|..++.....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999886 66788889999999999999999999999886422 133344444445
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 017414 154 HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 233 (372)
..+.+...++++.+-+. .+.+......+...+...|+.++|..++++..+. +++... .++.+....++.+++++
T Consensus 242 ~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEK 315 (398)
T ss_pred hcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHH
Confidence 55566677777766443 3456778888999999999999999999999853 455532 23444456699999999
Q ss_pred HHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 234 LLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 234 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.+++. ...| |......+...|...+++++|.+.|+.+.+..|++ ..+..+..++.+.|+.++|.+++++-..
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99888 4456 55567888899999999999999999999999954 5788999999999999999999987643
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=1.1e-13 Score=125.44 Aligned_cols=290 Identities=17% Similarity=0.172 Sum_probs=205.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 89 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 89 (372)
-.....+...|++++|.+++.++.+ .+...|.+|...|-..|+.+++...+-.+-... +-|...|..+.....+.|
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 3344445556999999999988876 356788999999999999888888775554432 446778888888888889
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc----------------------------
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---------------------------- 141 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------------- 141 (372)
+++.|.-.|.++++.. |++...+-.-...|-+.|+...|...|.++.+.++
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999998888876 56666666677888888888888888877654221
Q ss_pred ----------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---------------------------CCHHH
Q 017414 142 ----------------ITWTTMIAGLALHGLGREALDMFSRMERARVK---------------------------PNEIT 178 (372)
Q Consensus 142 ----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------p~~~~ 178 (372)
..++.++..|.+...++.|......+...... ++...
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 23344444444444455554444444331111 11111
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGI--EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWGSLLAA 253 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~ 253 (372)
+ .+.-++.+.+..+....+...+..+ .+ .-++..|.-+.++|...|++.+|+.+|..+ +...+..+|..+..+
T Consensus 381 ~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 381 I-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred H-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 0 1111222333333333344444332 32 224567888899999999999999999998 222367799999999
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 254 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
|...|.+++|.+.+++++...|.+..+-..|...+.+.|+.++|.+++..+..
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999998763
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.3e-14 Score=127.47 Aligned_cols=277 Identities=13% Similarity=0.046 Sum_probs=220.3
Q ss_pred cCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHH
Q 017414 22 VGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENV--KPDEIAMLAALSACAQLGAVELGEW 96 (372)
Q Consensus 22 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~ 96 (372)
.-+..+|..+|..+++ + ...+...+..+|...+++++|.++|+.+.+... .-+..+|.+.+.-+.+ +-+..
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 4467889999999765 3 346677889999999999999999999987521 1256677777665432 12222
Q ss_pred HH-HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 017414 97 IH-NYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS---VITWTTMIAGLALHGLGREALDMFSRMERARV 172 (372)
Q Consensus 97 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 172 (372)
++ +.+.... +..+.+|.++.++|.-.++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+....
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 33 3333433 5678999999999999999999999999988654 46899999999999999999999998775421
Q ss_pred CCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHH
Q 017414 173 KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGS 249 (372)
Q Consensus 173 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~ 249 (372)
-+-..|..+...|.+.++++.|+-.|+++. .+.| +......+...+-+.|+.++|++++++. ...| |+..--.
T Consensus 487 -rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 487 -RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred -hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 123456677889999999999999999999 4455 4566667788899999999999999998 4444 5555555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
-+..+...+++++|...++++.++-|++..+|..++..|.+.|+.+.|+.-|.-+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 6677888999999999999999999999999999999999999999999888766443
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=4.5e-16 Score=131.88 Aligned_cols=256 Identities=11% Similarity=0.090 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcc-CC----CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELM-TE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 83 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 83 (372)
...+ .+...+.+.|++++|+++++.. .. .|...|..+...+...++++.|++.|+++...+. -+...+..++.
T Consensus 9 ~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~ 86 (280)
T PF13429_consen 9 EEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 3344 5688999999999999999643 32 2556677788888889999999999999988652 35556767777
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCcchHHHHHHHHHhcCChh
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTMIAGLALHGLGR 158 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 158 (372)
. ...+++++|..++....+. .++...+..++..+.+.|+++++..+++.+.. .+...|..+...+.+.|+++
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred c-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 6 7899999999998877664 35666777889999999999999999998652 45678889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+|++.+++..+.. +.|......++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|+..|++.
T Consensus 164 ~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 164 KALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccc
Confidence 9999999999873 225677888999999999999999999998864 2556677889999999999999999999998
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 239 -PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 239 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
...| |+.....+..++...|+.++|.++.+++.+
T Consensus 241 ~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 3345 777788888999999999999999888765
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=4.1e-13 Score=119.67 Aligned_cols=288 Identities=11% Similarity=0.036 Sum_probs=207.8
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHhccCC--CCh-hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 017414 11 FWNTMVAGYA--KVGDLNNARALFELMTE--KNV-ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE--IAMLAALS 83 (372)
Q Consensus 11 ~~~~l~~~~~--~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~ 83 (372)
.+..+..+.. ..|+++.|.+.+.+..+ |+. ..+-.....+.+.|+++.|.+.+.+..+.. |+. ........
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHH
Confidence 3444555554 47999999999988776 433 334455677888899999999999987753 443 34444578
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHH----HHHHHHHhcCC
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWT----TMIAGLALHGL 156 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~l~~~~~~~~~ 156 (372)
.+...|+++.|...++.+.+.. |.+..+...+...+...|++++|.+.+..+.+. +...+. .........+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999986 557788889999999999999999999988854 222221 11112233333
Q ss_pred hhHHHHHHHHHHHcCC---CCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHH---HHHHHHHHHhcCCHHH
Q 017414 157 GREALDMFSRMERARV---KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ---YGCMIDLLGRAGYLQE 230 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~ 230 (372)
.+++.+.+..+..... +.+...+..+...+...|+.++|.+++++..+. .|+... .....-.....++.+.
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHH
Confidence 3444445555554421 136778888889999999999999999999964 333321 1112222334578888
Q ss_pred HHHHHhhC-CCCCCH---HHHHHHHHHHHHcCChhHHHHHHHH--HHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 231 AEKLLRRM-PFEANA---AIWGSLLAASNIYGDVELGECALQH--LIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 231 a~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
+.+.+++. ...|+. ....++...+.+.|++++|.+.|+. ..+..|+ +..+..++..+.+.|+.++|.+++++-
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888776 334533 5667888999999999999999994 5567774 456889999999999999999999875
Q ss_pred H
Q 017414 305 R 305 (372)
Q Consensus 305 ~ 305 (372)
.
T Consensus 397 l 397 (409)
T TIGR00540 397 L 397 (409)
T ss_pred H
Confidence 3
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=3.6e-14 Score=124.80 Aligned_cols=247 Identities=13% Similarity=0.128 Sum_probs=198.0
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHH
Q 017414 55 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL--NTIVPLNNALIDMYAKSGKIGKALQV 132 (372)
Q Consensus 55 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 132 (372)
+..+|+..|.+.... +.-+......+..+|...+++++|.++|+.+.+... -.+..+|.+.+..+-+.=.+.---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567899999995553 344455666788999999999999999999987531 23577888877765432211111111
Q ss_pred HHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC
Q 017414 133 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK 211 (372)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 211 (372)
+-.+.+..+.+|-++..+|.-+++++.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+... ++.|.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCch
Confidence 22223456789999999999999999999999999876 45 67888888888888899999999999998 43332
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 212 -IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 212 -~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
-..|..+.-.|.+.++++.|+-.|++. .+.| +.+....+...+.+.|+.++|+++++++..++|.++-.-...+..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 355666788999999999999999998 7777 5666777788899999999999999999999999999999999999
Q ss_pred HHcCCchhHHHHHHHHHhC
Q 017414 289 AILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (372)
...+++++|...+++++..
T Consensus 568 ~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL 586 (638)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 9999999999999999764
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=2.5e-12 Score=121.74 Aligned_cols=140 Identities=11% Similarity=0.006 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCh-hhHHHH--HHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 017414 14 TMVAGYAKVGDLNNARALFELMTEKNV-ISWTTL--IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 90 (372)
Q Consensus 14 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l--~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 90 (372)
.++..+...|+.++|+..+++...|+. ..+..+ +..+...|++++|+++|+++.+.. +-+...+..++..+...++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCC
Confidence 555555555666666665555554422 222222 335555566666666666655542 2233444445555555556
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcchHHHHHHHHHhcCC
Q 017414 91 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGL 156 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 156 (372)
.++|...++.+.+. .|+...+..++..+...++..+|++.++++.+ | +...+..+..++.+.|-
T Consensus 152 ~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 152 GGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred HHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 66666555555543 23333333333333334444445555555543 2 23344444555544443
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=2.6e-12 Score=121.61 Aligned_cols=296 Identities=12% Similarity=0.041 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
......+...|...|++++|+++|+++.+ | ++..+..++..+...++.++|++.++++.+. .|+...+..++..+
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~ 179 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLN 179 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHH
Confidence 33334446688999999999999999986 3 4567778889999999999999999999875 56666665555555
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---------------------------
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--------------------------- 138 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------- 138 (372)
...++..+|.+.++++.+.. |.+...+..+.....+.|-...|.++..+-..
T Consensus 180 ~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 55666666999999999875 55677777788888877776666665543220
Q ss_pred ------------------------CCcc---hH----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 017414 139 ------------------------KSVI---TW----TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 187 (372)
Q Consensus 139 ------------------------~~~~---~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 187 (372)
+++. .| -=.+-++...|++.++++.|+.+...+.+....+-..+.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 0010 11 1123456778888999999999988876545567778888999
Q ss_pred ccCchHHHHHHHHHhHHhcC----CCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-------------C--CHH-H
Q 017414 188 HVGLVELGRRYFNIMKSRYG----IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-------------A--NAA-I 246 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-------------~--~~~-~ 246 (372)
..+++++|..+|+.+....+ .+++......|..+|...+++++|..+++++ ... | |-. .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 99999999999998865321 1234444577888888999999999988887 111 2 222 2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+..++..+.-.|+..+|++.++++....|.|+.....+...+...|.+.+|.+.++.....
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 3345566778899999999999998888999888899999999999999999988765443
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=1.8e-12 Score=114.96 Aligned_cols=255 Identities=14% Similarity=-0.017 Sum_probs=203.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHH--HHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTE--KNVISWT--TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
|........+.|+++.|...|.++.+ |+..... .....+...|+++.|.+.++++.+.. +-+...+..+...+.+
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 33335555899999999999999886 4433222 33678899999999999999998864 3466778888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCCh
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIV-------PLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLG 157 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 157 (372)
.|++++|..++..+.+.+..++. .+|..++.......+.+...++++.+.+ .++.....+...+...|+.
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999988654332 1333444444455567777788887753 4777888999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
++|.+++++..+. +|+.... ++.+....++.+++.+..+...++ .+-|+..+..+.+.+.+.|++++|.+.|+.
T Consensus 280 ~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 280 DTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999885 4554322 333445669999999999999964 455677888999999999999999999999
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 238 M-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 238 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
. ...|+...+..+...+...|+.++|.+.+++...+
T Consensus 354 al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 354 ALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8 77899999999999999999999999999998774
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.1e-12 Score=105.86 Aligned_cols=302 Identities=15% Similarity=0.098 Sum_probs=223.0
Q ss_pred cCCHHHHHHHHhccCCCChhh---HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCChHHHH
Q 017414 22 VGDLNNARALFELMTEKNVIS---WTTLIAGYAQMDQPNEAITLFRRMQVENVKPD---EIAMLAALSACAQLGAVELGE 95 (372)
Q Consensus 22 ~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~ 95 (372)
+++.++|.++|-+|.+-|..+ .-+|.+.|.+.|..++|+.+.+.+.++.--+. ......|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 578899999999998865544 45788899999999999999999987521111 123445667788999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHH--------HHHHHHHhcCChhHHHHHHHHH
Q 017414 96 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWT--------TMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+...|+ -+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999998755 344556677999999999999999999988765554444 4445556678899999999998
Q ss_pred HHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH
Q 017414 168 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAI 246 (372)
Q Consensus 168 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~ 246 (372)
.+.+.+ ....--.+.+.....|+++.|.+.|+.+.+. +..--..+...|..+|...|+.++....+.++ ...+....
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 886422 2333335667888999999999999999865 33334567788889999999999999999887 55566666
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH---HcCCchhHHHHHHHHHhCCCccCCceeEEEeCCE
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA---ILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKR 323 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~ 323 (372)
-..+...-....-.+.|...+.+-....| +...+..|+.... .-|.+.+-..+++.|....++..|....-.++-.
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~ 363 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFT 363 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCc
Confidence 66666666666777888888888888888 4445666665543 2455778888999998777777766555444433
Q ss_pred EEEE
Q 017414 324 VHEF 327 (372)
Q Consensus 324 ~~~~ 327 (372)
.|.+
T Consensus 364 a~~l 367 (389)
T COG2956 364 AHTL 367 (389)
T ss_pred ceee
Confidence 3433
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=3.9e-12 Score=113.44 Aligned_cols=262 Identities=12% Similarity=-0.009 Sum_probs=195.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh--hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--KNV--ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 83 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 83 (372)
+...|-....++.+.|+.+.|.+.|.+..+ |+. ...-.....+...|+++.|.+.++.+.+.. +-+...+..+..
T Consensus 117 ~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~ 195 (409)
T TIGR00540 117 PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEE 195 (409)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344556667888899999999999999754 443 234445888899999999999999999874 346667888999
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH---Hh----cCCHHHHHHHHHhccc---CCcchHHHHHHHHHh
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY---AK----SGKIGKALQVFENMKN---KSVITWTTMIAGLAL 153 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 153 (372)
.+...|+++.|.+.+..+.+.+..+.......-...+ .. ....+...+.++...+ .+...+..+...+..
T Consensus 196 ~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~ 275 (409)
T TIGR00540 196 AYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID 275 (409)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999987543332211111111 22 2223444555555543 377889999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHH--H-HHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 017414 154 HGLGREALDMFSRMERARVKPNEIT--F-IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 230 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (372)
.|++++|.+++++..+.. |+... + ..........++.+.+.+.++...+...-.|+......+...+.+.|++++
T Consensus 276 ~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred CCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHH
Confidence 999999999999999863 33331 1 112222344678888999998888642222222666789999999999999
Q ss_pred HHHHHhh--C-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 231 AEKLLRR--M-PFEANAAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 231 a~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
|.+.|+. . ...|+...+..+...+...|+.++|.+++++...
T Consensus 354 A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 354 AADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999994 3 6689999999999999999999999999999866
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.3e-12 Score=108.98 Aligned_cols=221 Identities=11% Similarity=0.072 Sum_probs=170.3
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----------------------
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK----------------------- 139 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------- 139 (372)
.++......+++.+-.......|++.+...-+....+.-...+++.|+.+|+++.+.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444455555555555555555555444444445555555666666666655543
Q ss_pred --------------CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 140 --------------SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 140 --------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
-+.|...+..-|+-.++.++|...|++.++.+ +.....|+.+..-|....+...|..-++.+.+
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd- 392 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD- 392 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence 22344445566777889999999999999875 33567788888999999999999999999994
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHH
Q 017414 206 YGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAI 283 (372)
Q Consensus 206 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 283 (372)
-.+.|-..|..|.++|.-.+...=|+-.|++. ..+| |+..|.+|..+|.+.++.++|+..|.++...+..+...+..
T Consensus 393 -i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 393 -INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred -cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 33457789999999999999999999999998 5566 88899999999999999999999999999988767789999
Q ss_pred HHHHHHHcCCchhHHHHHHHHHh
Q 017414 284 LSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
|+..|.+.++.++|...|++..+
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999887754
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=7.6e-13 Score=111.67 Aligned_cols=274 Identities=11% Similarity=0.063 Sum_probs=215.1
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhh-----HHHHHHHHHhC-CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 017414 16 VAGYAKVGDLNNARALFELMTEKNVIS-----WTTLIAGYAQM-DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 89 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 89 (372)
..-|.++|+++.|+++++-..+.|..+ -|.-+.-|.+- .++..|.++-+..+... .-+......-.+.....|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 345789999999999998887754433 22222333333 46778888777666543 334444444444555678
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK---NKSVITWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
++++|...|++.....-.-....|| +.-.+...|++++|+.+|-++. ..+..+.-.+...|-...+..+|++++.+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 9999999999998765444444554 5666888999999999998764 46788888899999999999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH
Q 017414 167 MERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAA 245 (372)
Q Consensus 167 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~ 245 (372)
.... ++.|+.....|...|-+.|+-.+|.+.+-.--. -++.+..+...|..-|....-+++++..|++. -++|+..
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 7655 566778888999999999999999987765542 56778889888999999998999999999998 6789999
Q ss_pred HHHHHHHHH-HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCc
Q 017414 246 IWGSLLAAS-NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRW 294 (372)
Q Consensus 246 ~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 294 (372)
-|..++..| .+.|++++|..+++...+..|.+......|.+.+...|-.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999998855 6779999999999999999999999999999888877643
No 37
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=1.5e-11 Score=102.36 Aligned_cols=290 Identities=12% Similarity=0.107 Sum_probs=202.0
Q ss_pred HHHHHHHh--cCCHHHHHHHHhccCCC---ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 14 TMVAGYAK--VGDLNNARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 14 ~l~~~~~~--~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
.+.++..+ .|+|.+|+++..+-.+. ....|-.-+.+.-..|+.+.+-.++.+..+..-.++...+.+........
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 34444444 68888888888775542 33455566666777788888888888887753355666666777778888
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc-----------chHHHHHHHHHhcCCh
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV-----------ITWTTMIAGLALHGLG 157 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~ 157 (372)
|+.+.|..-...+.+.+ +-++.+......+|.+.|+++....++.++.+... .+|..++.-....+..
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 88888888888888775 55667777788888888888888888888876432 3566666555555555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
+.-...|++.-.. .+.+...-..++.-+.+.|+.++|.++..+..++ +..|+.. .+ -.+.+-++...-.+..++
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHH
Confidence 5545555554433 3444555566777778888888888888888765 5555511 11 223345555544444444
Q ss_pred C--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc
Q 017414 238 M--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311 (372)
Q Consensus 238 ~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 311 (372)
. ....++..+.+|...|.+.+.+.+|...|+.+.+..| +...|..+++++.+.|+..+|.+.+++-...-.+|
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 3 1122447788899999999999999999999999888 55699999999999999999999998876444443
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=4.4e-12 Score=102.54 Aligned_cols=268 Identities=12% Similarity=0.100 Sum_probs=210.6
Q ss_pred CcccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-CCh------hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC
Q 017414 1 MFTLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE-KNV------ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP 73 (372)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 73 (372)
|++.++....+.-+|.+.|.+.|..++|+++...+.+ ||. .+...|..-|...|-++.|+.+|..+.+.+ .-
T Consensus 61 ~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-ef 139 (389)
T COG2956 61 MLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EF 139 (389)
T ss_pred HHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hh
Confidence 3456777788888999999999999999999998876 543 245678888999999999999999998765 44
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHH
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI----VPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTT 146 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 146 (372)
-......|+..|....+|++|+.+-+++.+.+-.+. ...|..|...+....+.++|..++.+..+. .+.+--.
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~ 219 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII 219 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence 566788899999999999999999999988765543 345677777778888999999999988754 3456667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC
Q 017414 147 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 226 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 226 (372)
+...+...|+++.|.+.++...+.+..--..+...|..+|...|+.++...++..+.+. .+....-..+.+......
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~ 296 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQE 296 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhh
Confidence 78889999999999999999999876555677888999999999999999999998854 344444455555555555
Q ss_pred CHHHHHH-HHhhCCCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHH
Q 017414 227 YLQEAEK-LLRRMPFEANAAIWGSLLAASNIY---GDVELGECALQHLIK 272 (372)
Q Consensus 227 ~~~~a~~-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 272 (372)
-.+.|.. +.+++..+|+...+..++..-..- |...+-...++.|..
T Consensus 297 G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 297 GIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5555555 456667789999999999865433 334555556666654
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=2.5e-13 Score=122.90 Aligned_cols=265 Identities=14% Similarity=0.132 Sum_probs=196.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 017414 61 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS 140 (372)
Q Consensus 61 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 140 (372)
.++-.+...|+.|+.+||..++.-||..|+.+.|- +|..|.-...+.+..+++.++.+...+++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667788899999999999999999999999999 9999998888889999999999999999888776 788
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
..+|..|..+|...|+... ++..++ -...+...+...|.-.....++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999776 333332 222344556666766666777776554445556654 3566
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHH
Q 017414 221 LLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY-GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 299 (372)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 299 (372)
.....|-++.+++++..+|...-......+++-+... ..+++.....+...+ .| ++.+|..+.++-...|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 6677888999999998885332111222234433322 233444444444444 34 77899999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccccccccc
Q 017414 300 IRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVL 365 (372)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~ 365 (372)
++.+|++.|++..+..+|..+- |.. ....++.+.+.|++.|+.|+.++.-.
T Consensus 226 ll~emke~gfpir~HyFwpLl~--------g~~-------~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLL--------GIN-------AAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhh--------cCc-------cchHHHHHHHHHHHhcCCCCcchhHH
Confidence 9999999999999999996543 322 22344556689999999999988643
No 40
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=6.7e-12 Score=105.26 Aligned_cols=131 Identities=19% Similarity=0.239 Sum_probs=102.1
Q ss_pred cccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC----CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHH
Q 017414 2 FTLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA 77 (372)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 77 (372)
++..|....+|..+|.++++--..+.|..++++-.. .+..+||.+|.+-.- ....++..+|....+.||..|
T Consensus 200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFT 275 (625)
T ss_pred HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHh
Confidence 456788889999999999999999999999998765 466677877765432 222677888888888899999
Q ss_pred HHHHHHHHHccCChHH----HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH-HHHHHHhc
Q 017414 78 MLAALSACAQLGAVEL----GEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK-ALQVFENM 136 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~ 136 (372)
+|+++++..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ |..++.++
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 9999998888887654 55677888888999988888888888888777654 44444443
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=5.1e-12 Score=104.08 Aligned_cols=196 Identities=14% Similarity=0.076 Sum_probs=146.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 017414 110 VPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 110 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
...+..+...+...|++++|.+.+++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 455566677777777777777777765532 34566677777778888888888888777654 33455666677778
Q ss_pred cccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHH
Q 017414 187 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 187 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
...|++++|...++.+......+.....+..+..++...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888753222234456677788888889999999888887 3334 4567778888888999999999
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 265 CALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 265 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999998888777777888888888899999999988877654
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4e-11 Score=101.60 Aligned_cols=249 Identities=10% Similarity=0.067 Sum_probs=188.6
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHH-HHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVK--PDEIAMLAALSACAQLGAVELGEWIHN-YIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
.+.-...++++|+.+|+++.+...- -|..+|..++-+-... -. ..++. ...+.. +-.+.|...+.+-|+-.+
T Consensus 270 ~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~--sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~ 344 (559)
T KOG1155|consen 270 AASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK--SK--LSYLAQNVSNID-KYRPETCCIIANYYSLRS 344 (559)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh--HH--HHHHHHHHHHhc-cCCccceeeehhHHHHHH
Confidence 3344566778888888887776311 1345555554332211 11 11111 111111 234556677788888999
Q ss_pred CHHHHHHHHHhcccCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHH
Q 017414 125 KIGKALQVFENMKNKS---VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNI 201 (372)
Q Consensus 125 ~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 201 (372)
+.++|...|++..+-| ..+|+.+..-|...++...|++.|+...+-+ +.|-..|..|..+|.-.+.+.-|.-+|++
T Consensus 345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 9999999999987644 4689999999999999999999999999874 55788999999999999999999999999
Q ss_pred hHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-------
Q 017414 202 MKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIK------- 272 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------- 272 (372)
+.. --+.|...|.+|.++|.+.++.++|...|.+. .-..+...+..|...+-+.++.++|.+.+.+..+
T Consensus 424 A~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~ 501 (559)
T KOG1155|consen 424 ALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE 501 (559)
T ss_pred HHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 983 33457899999999999999999999999998 2244668899999999999999999999998887
Q ss_pred hCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 273 LEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 273 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
..|....+...|..-+.+.+++++|.......
T Consensus 502 ~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 502 IDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 23434445556788889999999998866544
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=2.5e-10 Score=95.20 Aligned_cols=258 Identities=13% Similarity=-0.010 Sum_probs=215.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCCC----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTEK----NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 83 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 83 (372)
....|..-+.+-.+.|+.+.+-+.+.+..++ +...+-+........|++..|..-..++.+.+ +-.+........
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r 195 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALR 195 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHH
Confidence 3455666677778899999999999998874 34567777788999999999999999999875 446677888899
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHh
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIV-------PLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLAL 153 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 153 (372)
+|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+..+.-...++...+ .++..-.+++.-+.+
T Consensus 196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 999999999999999999999865553 4567777777777777777778887763 567888889999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 017414 154 HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 233 (372)
.|+.++|.++..+..+.+..|.. ..+ -.+.+.++...-++..+...+.++. ++..+..|...|.+.+.+.+|..
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred cCChHHHHHHHHHHHHhccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999998877762 222 2466778888888888888765444 44778899999999999999999
Q ss_pred HHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 234 LLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 234 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
.|+.. ...|+..+|..+..++...|+..+|.+..++...
T Consensus 350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99987 8889999999999999999999999999999886
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=1.3e-11 Score=114.32 Aligned_cols=259 Identities=13% Similarity=-0.004 Sum_probs=186.3
Q ss_pred CChhhHHHHHHHHHh-----CCCccHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH---------ccCChHHHHHHHHHHH
Q 017414 38 KNVISWTTLIAGYAQ-----MDQPNEAITLFRRMQVENVKPD-EIAMLAALSACA---------QLGAVELGEWIHNYIE 102 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 102 (372)
.+...|...+.+-.. .+..++|+++|++..+. .|+ ...|..+..++. ..+++++|...++++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455566666555322 13467999999999885 454 455655555443 2345789999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 017414 103 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 179 (372)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 179 (372)
+.. +.+...+..+...+...|++++|...|++..+. +..++..+..++...|++++|+..+++..+.+..+ ...+
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~ 409 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAG 409 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhH
Confidence 875 557888888999999999999999999987753 34678889999999999999999999999875332 2223
Q ss_pred HHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH-HHHHHHHHHH
Q 017414 180 IAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAI-WGSLLAASNI 256 (372)
Q Consensus 180 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~-~~~l~~~~~~ 256 (372)
..++..+...|++++|...++++.+. . +| ++..+..+..++...|++++|...+.++ +..|+... .+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566678999999999998753 2 34 4556777888999999999999999988 44555444 4445556676
Q ss_pred cCChhHHHHHHHHHHH---hCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 257 YGDVELGECALQHLIK---LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 257 ~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
.| +.+...++.+.+ .++.++.. +...+.-.|+.+.+... +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 477777777766 33434322 55567777777777666 7776554
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=1.5e-11 Score=113.84 Aligned_cols=209 Identities=9% Similarity=-0.056 Sum_probs=115.6
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCCh
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK---------SGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLG 157 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 157 (372)
+.++|...+++..+.. |.+...|..+..+|.. .+++++|...+++..+. +..++..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4566666666666553 2334445444444332 23356666666665532 344566666666666667
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
++|...|++..+.+ +.+...+..+...+...|++++|...++++.+ +.|+. ..+..++..+...|++++|...++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 77777776666653 22344555566666666677777776666663 23332 222233334555666666666666
Q ss_pred hC--CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 237 RM--PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 237 ~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+. ...|+ ...+..+..++...|+.++|...++++....|.+......+...|...| +.|...++.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 55 11232 3334445556666677777766666665555555555555555555555 35555555543
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2e-11 Score=104.02 Aligned_cols=190 Identities=16% Similarity=0.158 Sum_probs=146.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 189 (372)
|.-+..+|....+.++..+.|+...+ .|+.+|..-...+.-.+++++|..=|++..... +-+...|.-+..+.-+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 55556666666777777777766553 356677777777777888888888888877753 22445565566666688
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---------HHHHHHHHHHHHHcCC
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN---------AAIWGSLLAASNIYGD 259 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~---------~~~~~~l~~~~~~~~~ 259 (372)
+.++++...|++..+ .++.-+..|+.....+..++++++|.+.|+.. .+.|. +.+...++-.-- .++
T Consensus 442 ~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d 518 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KED 518 (606)
T ss_pred HHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhh
Confidence 899999999999997 56777889999999999999999999999887 44443 222223332222 389
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 260 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+..|+.+++++.+++|....+|..|+..-..+|+.++|+++|++-..
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997643
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2.9e-11 Score=110.97 Aligned_cols=306 Identities=13% Similarity=0.096 Sum_probs=236.1
Q ss_pred cccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCC------hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH
Q 017414 2 FTLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKN------VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE 75 (372)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 75 (372)
+...+.|+.+.+.|...|.-.|+++.++.+...+...+ ..+|..+.++|...|++++|..+|.+..+. .|+.
T Consensus 263 y~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~ 340 (1018)
T KOG2002|consen 263 YKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDN 340 (1018)
T ss_pred HhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCC
Confidence 34678899999999999999999999999988887632 346889999999999999999999888875 3444
Q ss_pred --HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC----CHHHHHHHHHhcccC---CcchHHH
Q 017414 76 --IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG----KIGKALQVFENMKNK---SVITWTT 146 (372)
Q Consensus 76 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~ 146 (372)
..+..+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..++|..++.+..++ |..+|-.
T Consensus 341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~ 419 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLE 419 (1018)
T ss_pred ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 345578889999999999999999999874 666778888888888775 567888888877665 4556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHH----HcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcC--CC------cCHHH
Q 017414 147 MIAGLALHGLGREALDMFSRME----RARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG--IE------PKIEQ 214 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~------~~~~~ 214 (372)
+...+-.. ++..++..|.... ..+-.+.....|.+...+...|+++.|...|........ .. ++..+
T Consensus 420 laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 420 LAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 66666544 4444477666544 345557778899999999999999999999999885311 11 22223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRM-PFEANAA-IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 292 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 292 (372)
-..+.+++-..++.+.|.+.|..+ ...|+-. .|..+.......++..+|...++.+...+..+|.++..++..+.+..
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhh
Confidence 455677777888999999999998 4456543 34445444455688899999999999999889999999999999999
Q ss_pred CchhHHHHHHHHHhCCCcc
Q 017414 293 RWNESGKIRKVMRDMGVKK 311 (372)
Q Consensus 293 ~~~~a~~~~~~m~~~g~~~ 311 (372)
.|..|.+-|......-...
T Consensus 579 ~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred hhcccccHHHHHHhhhccC
Confidence 9999999777775544333
No 48
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2.8e-11 Score=101.61 Aligned_cols=234 Identities=11% Similarity=0.113 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHh
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLAL 153 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 153 (372)
+..+|.++|.+.|+-...+.|.+++.+......+.+..+||.+|.+-.-...-+-.-+....-..||..|+|+++++..+
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 44455555555555555555555555554444445555555554443222221111111111123555555555555555
Q ss_pred cCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHH-HHHHHHHhHHhc---CCCc----CHHHHHHHHHH
Q 017414 154 HGLGRE----ALDMFSRMERARVKPNEITFIAILSACCHVGLVEL-GRRYFNIMKSRY---GIEP----KIEQYGCMIDL 221 (372)
Q Consensus 154 ~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~---~~~~----~~~~~~~li~~ 221 (372)
.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.... .+.| +...+..-++.
T Consensus 286 fg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~I 365 (625)
T KOG4422|consen 286 FGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSI 365 (625)
T ss_pred hcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHH
Confidence 554432 44566666677777777777766666666655533 333333333211 1111 22334445555
Q ss_pred HHhcCCHHHHHHHHhhC-------CCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHH--hCCCCcchHHHHHHHHH
Q 017414 222 LGRAGYLQEAEKLLRRM-------PFEAN---AAIWGSLLAASNIYGDVELGECALQHLIK--LEPHNSGNYAILSNIYA 289 (372)
Q Consensus 222 ~~~~g~~~~a~~~~~~~-------~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~ 289 (372)
|.+..+.+-|.++-.-+ -+.|+ ...|..+..+.+.....+.....|+.+.- ..| ++.+...++++..
T Consensus 366 c~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p-~~~~m~~~lrA~~ 444 (625)
T KOG4422|consen 366 CSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP-HSQTMIHLLRALD 444 (625)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC-CchhHHHHHHHHh
Confidence 55666666555544333 11222 12344455555555555555555555543 223 4456666666666
Q ss_pred HcCCchhHHHHHHHHHhCC
Q 017414 290 ILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~g 308 (372)
..|.++-.-+++..++..|
T Consensus 445 v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 445 VANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hcCcchhHHHHHHHHHHhh
Confidence 6777777777777666665
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=3e-10 Score=96.74 Aligned_cols=319 Identities=14% Similarity=0.181 Sum_probs=198.6
Q ss_pred HhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 017414 20 AKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWI 97 (372)
Q Consensus 20 ~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 97 (372)
-..|++..|.++|++-.+ |+...|++.|..-.+-+.++.|..+|++.+- +.|+..+|......=.+.|....+.++
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344555555555544332 5666666666666666666666666666554 346666666555555566666666666
Q ss_pred HHHHHHc-CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-------------------------------------
Q 017414 98 HNYIEQY-GL-NTIVPLNNALIDMYAKSGKIGKALQVFENMKN------------------------------------- 138 (372)
Q Consensus 98 ~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------------------- 138 (372)
|+.+++. |- ..+...+.+....=.++..++.|.-+|+-...
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 6655542 10 01112222222222233334444333322110
Q ss_pred -------C---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-------HHHHH---HHHhcccCchHHHHHH
Q 017414 139 -------K---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEI-------TFIAI---LSACCHVGLVELGRRY 198 (372)
Q Consensus 139 -------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-------~~~~l---~~~~~~~~~~~~a~~~ 198 (372)
. |-.+|--.+..-...|+.+...++|++.... ++|-.. .|.-+ +-.-....+.+.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 0 2234555555566678888888888888765 455321 11111 1111245788888888
Q ss_pred HHHhHHhcCCCcCHHHHHHHHHH----HHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 199 FNIMKSRYGIEPKIEQYGCMIDL----LGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
|+...+ -++....|+..+--. -.++.++..|.+++... |..|-..+|...|..-.+.++++.+..++++.++.
T Consensus 389 yq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 389 YQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 888884 445555665544333 34688999999999887 88999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 017414 274 EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQ 350 (372)
Q Consensus 274 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (372)
+|.+..+|...+..-...|+++.|..+|+-..+......|...| ..++.=....++.+.+..+.++++++
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw-------kaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW-------KAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH-------HHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887654433343322 11222233456666666666666554
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.47 E-value=3.3e-11 Score=110.69 Aligned_cols=300 Identities=12% Similarity=0.068 Sum_probs=212.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-------CCh------hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCC
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTE-------KNV------ISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 72 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 72 (372)
+.-+...|.+...+...|++.+|...|+.... ++. .+-..+..+.-..+++..|.+.|....+.. +
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p 527 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-P 527 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-c
Confidence 35566777777778888888888877776543 122 123335555666677888888888777652 2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCcchHHHH
Q 017414 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTM 147 (372)
Q Consensus 73 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 147 (372)
--+..|..++......+...+|...+....+.. ..++..+..+...+.+...+..|.+-|+.+.+ +|+.+.-+|
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 234445555544445567777777777777654 55666666677788888888888776665542 244444445
Q ss_pred HHHHHh------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH
Q 017414 148 IAGLAL------------HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY 215 (372)
Q Consensus 148 ~~~~~~------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 215 (372)
...|.+ .+..++|+++|.+.++.. +-|...-+.+.-.++..|++..|..+|.++.+. ......+|
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~ 683 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVW 683 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCcee
Confidence 554432 345678999999888874 446777778888889999999999999999964 23345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH-
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI- 290 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~- 290 (372)
..+..+|..+|++..|+++|+.. .-..++.+...|..++...|.+.+|.+.+..+....|.++.+-..++....+
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 88999999999999999999887 3345788899999999999999999999999999999888665555444332
Q ss_pred ------------------cCCchhHHHHHHHHHhCCCc
Q 017414 291 ------------------LGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 291 ------------------~g~~~~a~~~~~~m~~~g~~ 310 (372)
.+..+.|.++|..|...+-+
T Consensus 764 a~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 764 AESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35567778888888766544
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=7.3e-11 Score=97.14 Aligned_cols=192 Identities=16% Similarity=0.087 Sum_probs=95.8
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDM 119 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (372)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456666666666666666666666665542 2234455556666666666666666666666543 3334445555555
Q ss_pred HHhcCCHHHHHHHHHhcccC-----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHH
Q 017414 120 YAKSGKIGKALQVFENMKNK-----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 194 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 194 (372)
+...|++++|.+.|++..+. ....+..+..++...|++++|.+.+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 66666666666665554321 11233344444445555555555555444432 1123334444444444445555
Q ss_pred HHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 195 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
|...+++.... .+.+...+..++..+...|+.++|..+.+
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 54444444421 12233333334444444444444444433
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-10 Score=101.34 Aligned_cols=258 Identities=12% Similarity=0.026 Sum_probs=165.6
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 121 (372)
..-.-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++++.- |....+|-++.--|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 33344455566677777777777777653 4555556556667777777666666666666653 555667777777777
Q ss_pred hcCCHHHHHHHHHhcccCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHH
Q 017414 122 KSGKIGKALQVFENMKNKS---VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRY 198 (372)
Q Consensus 122 ~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 198 (372)
-.|+..+|++.|.+...-| ...|-.+..+|+-.|..++|+..|...-+. ++-....+..+.--|.+.++.+.|.++
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 7777777777777655433 357777777777777777777777665543 111111222233456667777777777
Q ss_pred HHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--C------CCC-CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 017414 199 FNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--P------FEA-NAAIWGSLLAASNIYGDVELGECALQH 269 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 269 (372)
|.++.. -.+.|+...+-+.-.....+.+.+|..+|+.. + -.+ -.++++.|..++.+.+.+++|+..+++
T Consensus 403 f~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 403 FKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 777773 22334555555555555666777777776654 1 011 234566677777777777777777777
Q ss_pred HHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 270 LIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 270 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
++.+.|.++.++..++-.|...|+++.|.+.|.+.
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 77777777777777777777777777777777654
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=1.1e-11 Score=100.52 Aligned_cols=224 Identities=13% Similarity=0.051 Sum_probs=189.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcchHHHHHHHHHhcC
Q 017414 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHG 155 (372)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 155 (372)
+.+.++|.+.|.+.+|+..++...+. .|-+.||..|-+.|.+..+...|+.+|.+-.+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 56889999999999999999988876 56677888899999999999999999988765 3 3344455677788899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLL 235 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 235 (372)
+.++|.++|+...+.. +.+......+...|.-.++++-|.++|+++..- |+ .++..|..+.-+|.-.++++-++..|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999988863 335566667777888889999999999999953 65 47888999999999999999999999
Q ss_pred hhC---CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 236 RRM---PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 236 ~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
++. -.+| -..+|..+.......|++..|.+.|+-++..+|++...++.|...-.+.|+.++|..+++...+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 887 2234 35678889988999999999999999999999999999999999999999999999999887553
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.7e-10 Score=98.17 Aligned_cols=280 Identities=10% Similarity=0.034 Sum_probs=223.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAAL 82 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 82 (372)
..|+.+...-.+-+...+++.+..++++.+.+. ....+-.-|.++...|+..+-..+=.++++. .+-...+|.++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 356777788888899999999999999999874 4456777778899999999988888888885 345677899999
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-cchHHHHHHHHHhcCChhH
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KS-VITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~ 159 (372)
.-|...|..++|.++|.+..... +.-...|......|+-.|..|.|...|....+ ++ -..+--+.--|.+.+..+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 88889999999999999988754 33467888999999999999999999887654 22 2233345556888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhc-CC---C-cCHHHHHHHHHHHHhcCCHHHHHHH
Q 017414 160 ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY-GI---E-PKIEQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 160 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~-~~~~~~~~li~~~~~~g~~~~a~~~ 234 (372)
|.+.|.+.... .+.|+...+-+.-.....+.+.+|..+|+.....- .+ . -...+++.|..+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999998875 34466677777766777899999999998877311 01 1 1335678899999999999999999
Q ss_pred HhhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 235 LRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 235 ~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
+++. .. +.+..++.++.-.+...|+++.|...|.+++.+.|++..+-..|..+.
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9997 33 348888999999999999999999999999999998875555554443
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=1e-10 Score=103.92 Aligned_cols=231 Identities=16% Similarity=0.164 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----C-CCCch-hHHHHHHHHHHhcCCHHHHHHHHHhccc-------C-
Q 017414 75 EIAMLAALSACAQLGAVELGEWIHNYIEQY-----G-LNTIV-PLNNALIDMYAKSGKIGKALQVFENMKN-------K- 139 (372)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~- 139 (372)
..+...+...|...|+++.|..++....+. | ..|.. ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446667889999999999999999988765 2 12332 3334577889999999999999998763 1
Q ss_pred ---CcchHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHhcccCchHHHHHHHHHhHHhcC--
Q 017414 140 ---SVITWTTMIAGLALHGLGREALDMFSRMERA-----RV-KPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYG-- 207 (372)
Q Consensus 140 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 207 (372)
-..+++.|..+|.+.|++++|...++...+. |. .|.. ..++.+...|+..+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2357888889999999999998888876542 21 2222 3455677788999999999999988775432
Q ss_pred CCc----CHHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-
Q 017414 208 IEP----KIEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIK- 272 (372)
Q Consensus 208 ~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~---------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 272 (372)
+.+ ...+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2467899999999999999999999987 1122 244677888899999999999999988766
Q ss_pred ---hCCCC---cchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 273 ---LEPHN---SGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 273 ---~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
.+|.+ ..+|..|+.+|...|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44544 4578899999999999999999988875
No 56
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.42 E-value=1e-09 Score=97.04 Aligned_cols=293 Identities=16% Similarity=0.126 Sum_probs=226.8
Q ss_pred HHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHcc
Q 017414 16 VAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRM----QVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m----~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
.-+|++..-++.|.++++..++ .+...|-+-...--.+|+.+...++..+. ...|+..+...|..=...|-..
T Consensus 413 wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 3456677778888888888776 36677877777777888888888877654 4468888888888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHH
Q 017414 89 GAVELGEWIHNYIEQYGLNTI--VPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDM 163 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 163 (372)
|..-.+..+....+..|++.. ..+|..-...|.+.+.++-|..+|....+- +...|......--..|..++...+
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 888888888888888776543 567777788888888888888888877653 445677777766777888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC
Q 017414 164 FSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA 242 (372)
Q Consensus 164 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~ 242 (372)
|++.... ++-....+......+-..|+...|..++..+-+. .+.+...|..-+..-.....++.|..+|.+. ...|
T Consensus 573 lqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 573 LQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 8888876 3445556666667777788888888888888753 2345677778888888888888888888887 6677
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCce
Q 017414 243 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGC 315 (372)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 315 (372)
+..+|..-+.....+++.++|.+++++.++..|.-+..|..++..+...++.+.|.+.|. .|++.-|..
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~----~G~k~cP~~ 718 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYL----QGTKKCPNS 718 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHH----hccccCCCC
Confidence 888888888888888888888888888888888888888888888888888888888775 466655543
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.6e-10 Score=97.38 Aligned_cols=290 Identities=14% Similarity=0.071 Sum_probs=197.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC--CC-hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcc
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTE--KN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE-IAMLAALSACAQL 88 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~ 88 (372)
-...+-|.++|.+++|++.+....+ |+ +..|.....+|...|+|+++.+.-.+.++ +.|+- -.+..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhh
Confidence 3445566777888888888887765 66 67788888888888888888887777776 45653 3556666777777
Q ss_pred CChHHHHHHHHHHHH-------------------------------cC--CCCchhHHHHHHHHHHh--------cC---
Q 017414 89 GAVELGEWIHNYIEQ-------------------------------YG--LNTIVPLNNALIDMYAK--------SG--- 124 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~-------------------------------~~--~~~~~~~~~~l~~~~~~--------~g--- 124 (372)
|++++|..-..-..= .+ +-|+.....+....+.. .+
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 887776543222110 00 11222222222221110 00
Q ss_pred --CHHHHHHHHHhcc------------c--------C-----Cc------chHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 017414 125 --KIGKALQVFENMK------------N--------K-----SV------ITWTTMIAGLALHGLGREALDMFSRMERAR 171 (372)
Q Consensus 125 --~~~~A~~~~~~~~------------~--------~-----~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 171 (372)
...++.+.+..-. + + |. .+...-..-+.-.|+.-.|..-|+..+...
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 0111111111110 0 0 10 111111122345678888888888888875
Q ss_pred CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHH
Q 017414 172 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGS 249 (372)
Q Consensus 172 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~ 249 (372)
..++. .|-.+...|....+.++.+..|..+.+ --+-++.+|..-.+.+.-.+++++|..=|++. .+.| +...|..
T Consensus 357 ~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 357 PAFNS-LYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred cccch-HHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 44443 266777789999999999999999983 22346788888899999999999999999998 6666 5667888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+..+..+.+.+++++..|++..+..|..+.+|+.....+..+++|+.|.+.|+...+.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8888889999999999999999999999999999999999999999999999987543
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.6e-10 Score=94.60 Aligned_cols=271 Identities=10% Similarity=-0.019 Sum_probs=153.1
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhH---HHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISW---TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA 80 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 80 (372)
.-+.|+.....+.+.+...|+.++|+..|+....-|+.+. ..-.-.+.+.|+.+....+...+... .+.+...|..
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhh
Confidence 3455566666666666666666666666665544322211 11122233455555555555555432 1234444444
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc--c-CCcchHHHHHHHHHhcCCh
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK--N-KSVITWTTMIAGLALHGLG 157 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~ 157 (372)
-+......++++.|..+-++.++.+ +.+...+..-...+...|+.+.|.-.|+... . -+...|.-|+.+|...|++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 4444455556666666666655543 3344445444556666677777766666543 2 2556677777777777777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHH-HHhc-ccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHH
Q 017414 158 REALDMFSRMERARVKPNEITFIAIL-SACC-HVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~ 234 (372)
.+|.-.-+...+. .+.+..+.+.+. ..|. ....-++|.++++... .+.|+- ...+.+...+...|+.+++..+
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 7766665554443 233445554442 2332 2233456666666665 344542 3445556666677777777777
Q ss_pred HhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 235 LRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 235 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
+++. ...||....+.|...+...+.++++...|..+..++|.+..+
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 7665 556777777777777777777777777777777777765543
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=1.2e-12 Score=78.82 Aligned_cols=50 Identities=28% Similarity=0.576 Sum_probs=41.7
Q ss_pred CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 38 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=7.7e-11 Score=95.66 Aligned_cols=229 Identities=13% Similarity=0.079 Sum_probs=196.0
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (372)
-+.+..+|.+.|-+.+|.+.++..++. .|-+.||..|-++|.+..++..|..++.+-.+. .|.++.......+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 467889999999999999999998885 577788888999999999999999999998876 36677777788899999
Q ss_pred cCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHH
Q 017414 123 SGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 123 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
.++.++|.++|+...+. ++.+...+...|.-.++++-|+.+|++++..|+. +...|+.+.-.|.-.++++-+..-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988753 5566666777888999999999999999999975 6678888888888899999999999
Q ss_pred HHhHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 200 NIMKSRYGIEPK--IEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 200 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
.+.... --.|+ ...|..+.......|++.-|.+.|+-. ....+...++.|.-.-.+.|+++.|..++..+....|
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 988854 22343 467888888889999999999999887 4344677899999888999999999999999999888
Q ss_pred C
Q 017414 276 H 276 (372)
Q Consensus 276 ~ 276 (372)
.
T Consensus 461 ~ 461 (478)
T KOG1129|consen 461 D 461 (478)
T ss_pred c
Confidence 6
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2.9e-10 Score=96.35 Aligned_cols=253 Identities=13% Similarity=0.057 Sum_probs=188.9
Q ss_pred HHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 017414 49 GYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA--LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126 (372)
Q Consensus 49 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 126 (372)
.+.++|+++.|++++.-..+..-+.-...-+.| +..+.--.++..|.++-+...... .-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 467889999999998877665433222222222 233333446777777777666543 23333333344555668999
Q ss_pred HHHHHHHHhcccCCcchHHHHH---HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 127 GKALQVFENMKNKSVITWTTMI---AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
++|.+.|++....|...-.+|. -.+-..|+.++|++.|-++... +..+.....-+...|....+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999999988876554443 3577889999999999887754 34466677778888988999999999999887
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 204 SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
. -++.|+.....|.+.|-+.|+-..|.+.+-.- . +..+..+..-|..-|....-+++++.+|+++.-+.|+-. -|
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-kw 662 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-KW 662 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-HH
Confidence 4 66778899999999999999999999976655 3 334777888888888888899999999999998888544 56
Q ss_pred HHH-HHHHHHcCCchhHHHHHHHHHh
Q 017414 282 AIL-SNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 282 ~~l-~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..+ ..++.+.|++++|.++|+....
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 554 5667789999999999998854
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2.8e-12 Score=77.21 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=39.7
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 017414 139 KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH 188 (372)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 188 (372)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777888888888888888888888888888888888888888877764
No 63
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.36 E-value=5.7e-09 Score=92.48 Aligned_cols=302 Identities=13% Similarity=0.080 Sum_probs=179.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
....|-....-+-..|++..|..++....+ | +...|-+-+.....+..+++|..+|.+... ..|+...|.--++.
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANL 660 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHH
Confidence 334444444444445555555555554443 1 234455555555555555555555555544 23444455444444
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcchHHHHHHHHHhcCChhHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~ 161 (372)
-.-.+..++|.+++++.++. ++.-...|-.+...+-+.++++.|...|..-.+ | .+..|-.|...--+.|..-.|.
T Consensus 661 er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHH
Confidence 44455555555555555554 233344555555555555555555555554432 2 2334555555555555666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 017414 162 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 241 (372)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 241 (372)
.++++.+-.+ +-+...|...|..-.+.|+.+.|..+..++.. ..+.+...|..-|....+.++-....+.+++..
T Consensus 740 ~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce-- 814 (913)
T KOG0495|consen 740 SILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-- 814 (913)
T ss_pred HHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--
Confidence 6666555443 23445555556666666666666666666554 334444555555555555555555555555542
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEE
Q 017414 242 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIE 319 (372)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~ 319 (372)
-|..+...+...+-...+++.|..-|.++.+.+|++-.+|..+...+...|.-++-.++++..... .|.-|..|..
T Consensus 815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~a 890 (913)
T KOG0495|consen 815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQA 890 (913)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHH
Confidence 355666777778888889999999999999999999999999999999999999999999887554 3444445543
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=2.3e-09 Score=91.26 Aligned_cols=217 Identities=10% Similarity=0.010 Sum_probs=153.7
Q ss_pred CCccHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 017414 54 DQPNEAITLFRRMQVEN-VKPD--EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130 (372)
Q Consensus 54 ~~~~~A~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 130 (372)
+..+.++.-+.+++... ..|+ ...|..+...+.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777777777542 2222 3457778888999999999999999999875 556888999999999999999999
Q ss_pred HHHHhccc--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcC
Q 017414 131 QVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG 207 (372)
Q Consensus 131 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 207 (372)
..|++..+ | +..+|..+..++...|++++|++.|++..+.. |+..........+...++.++|...+.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99998865 3 35688888889999999999999999988763 4432222222234456789999999977653 3
Q ss_pred CCcCHHHHHHHHHHHHhcCCH--HHHHHHHhhC-CCC----C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 208 IEPKIEQYGCMIDLLGRAGYL--QEAEKLLRRM-PFE----A-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 208 ~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~~-~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
..|+...+ .+... ..|+. +++.+.+.+. ... | ....|..+...+...|++++|...|+++.+.+|.+.
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 33433222 23333 34443 3333333322 111 1 335788889999999999999999999999997543
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=4.3e-10 Score=100.04 Aligned_cols=231 Identities=14% Similarity=0.099 Sum_probs=175.3
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHc-----C--CC
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVE-----NV-KPDEIA-MLAALSACAQLGAVELGEWIHNYIEQY-----G--LN 107 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~~-~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 107 (372)
+...|...|...|++++|+.++.+.++. |. .|...+ .+.+...|...+++++|..+|+.+... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555889999999999999999888764 21 233333 334777889999999999999988753 2 11
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccc----------CCc-chHHHHHHHHHhcCChhHHHHHHHHHHHc---CCC
Q 017414 108 TIVPLNNALIDMYAKSGKIGKALQVFENMKN----------KSV-ITWTTMIAGLALHGLGREALDMFSRMERA---RVK 173 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 173 (372)
--..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2246677888899999999999888876642 111 35677788899999999999999876642 122
Q ss_pred CC----HHHHHHHHHHhcccCchHHHHHHHHHhHHhc-----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhhC-----
Q 017414 174 PN----EITFIAILSACCHVGLVELGRRYFNIMKSRY-----GIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM----- 238 (372)
Q Consensus 174 p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~----- 238 (372)
++ ..+++.|...|...|++++|.++++.+.... +..+. ...++.|...|.+.+++.+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 3578899999999999999999999987642 11222 356788889999999999888888776
Q ss_pred ---CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 239 ---PFEANA-AIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 239 ---~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
+-.|+. .+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 334443 5799999999999999999999998875
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=7.5e-10 Score=94.21 Aligned_cols=213 Identities=15% Similarity=0.082 Sum_probs=155.0
Q ss_pred CChHHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHH
Q 017414 89 GAVELGEWIHNYIEQYG-LNT--IVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALD 162 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 162 (372)
+..+.++.-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+..+|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667777777777542 122 245678888999999999999999998764 356799999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CC
Q 017414 163 MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PF 240 (372)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~ 240 (372)
.|++..+.. +-+..++..+..++...|++++|.+.++...+. .|+..........+...++.++|...|.+. ..
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999999864 224567777888889999999999999999853 444322222233345678899999999765 32
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-------HhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 241 EANAAIWGSLLAASNIYGDVELGECALQHLI-------KLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
.|+...+ .......|+...+ ..+..+. ++.|..+.+|..++..+.+.|++++|...|++......
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3333222 2233445666544 3444444 34566667999999999999999999999998876543
No 67
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.30 E-value=7.1e-09 Score=95.01 Aligned_cols=304 Identities=13% Similarity=0.089 Sum_probs=191.5
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
++.|.|...|-.+.+...+.|++++|.-+|.+..+. +...+--=+..|-+.|+...|...|.++.....+.|..-+.
T Consensus 201 HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~ 280 (895)
T KOG2076|consen 201 HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE 280 (895)
T ss_pred hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH
Confidence 345555556666666666666666666666655542 22222333445556666666666666666542211211111
Q ss_pred ----HHHHHHHccCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc----C-----------
Q 017414 80 ----AALSACAQLGAVELGEWIHNYIEQY-GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----K----------- 139 (372)
Q Consensus 80 ----~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----------- 139 (372)
..++.+...++.+.|.+.++..... +-..+...++.++..|.+...++.|......+.. +
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~ 360 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERR 360 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhc
Confidence 2334444555556666666655542 2234455667777788887788887776655432 1
Q ss_pred -----------CcchHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHhcccCchHHHHHHHHHh
Q 017414 140 -----------SVITWT----TMIAGLALHGLGREALDMFSRMERARVKP--NEITFIAILSACCHVGLVELGRRYFNIM 202 (372)
Q Consensus 140 -----------~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 202 (372)
+..+|. -+.-++......+....+...+....+.| +...|.-+.+++.+.|.+..|..+|..+
T Consensus 361 ~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 361 REEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred cccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 111111 12233444444444445555555555333 4567888999999999999999999999
Q ss_pred HHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC------
Q 017414 203 KSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLE------ 274 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 274 (372)
... ...-+...|..+.++|...|.++.|.+.|+.. ...| +...-..|...+.+.|+.++|.+.+..+..-+
T Consensus 441 ~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 441 TNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred hcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 965 33335778999999999999999999999998 5556 44556667778899999999999998865222
Q ss_pred ---CCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 275 ---PHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 275 ---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+++...-......+...|+.++=..+-..|.+.
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 223345566777888999999877777666543
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.7e-08 Score=82.86 Aligned_cols=306 Identities=11% Similarity=-0.015 Sum_probs=221.6
Q ss_pred HHHHHHHh--cCCHHHHHHHHhccC--C---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHH-HHHHHHHH
Q 017414 14 TMVAGYAK--VGDLNNARALFELMT--E---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA-MLAALSAC 85 (372)
Q Consensus 14 ~l~~~~~~--~~~~~~A~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~ 85 (372)
..+.+++. .++...|..++-.+. + .|+.....+..++...|+.++|+..|++.... .|+..+ .....-.+
T Consensus 199 ~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 199 KWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHH
Confidence 34444444 344444444433332 2 47778899999999999999999999988764 454332 22333345
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALD 162 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 162 (372)
.+.|+.+....+...+.... .-+...|..-+......+++..|+.+-++..+. +...|-.-...+...|++++|.-
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred HhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 67788888888777776543 234444544555666778899999999887654 45566666678899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHH-HHHH-hcCCHHHHHHHHhhC-C
Q 017414 163 MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI-DLLG-RAGYLQEAEKLLRRM-P 239 (372)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~~-~ 239 (372)
.|+...... +-+...|..|+..|...|.+.+|.-.-+...+ -++.+..+.+.+. ..+. ....-++|..++++. .
T Consensus 356 aFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 356 AFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred HHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 999887652 34568999999999999999999988887774 4455666666663 3333 334468899999887 7
Q ss_pred CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEE
Q 017414 240 FEANA-AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYI 318 (372)
Q Consensus 240 ~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 318 (372)
++|+- .....+...+..-|..+.++.++++.....|+ ......|+..+...+.+++|++.|.....
T Consensus 433 ~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr------------ 499 (564)
T KOG1174|consen 433 INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR------------ 499 (564)
T ss_pred cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------
Confidence 77864 45677777899999999999999999998885 45899999999999999999998876533
Q ss_pred EeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 017414 319 EVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352 (372)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 352 (372)
..|+.+....-+.++.+.|+
T Consensus 500 --------------~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 500 --------------QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred --------------cCccchHHHHHHHHHHhccC
Confidence 35666677766755555554
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=8.2e-09 Score=93.02 Aligned_cols=255 Identities=11% Similarity=0.037 Sum_probs=156.3
Q ss_pred HHHhCCCccHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---
Q 017414 49 GYAQMDQPNEAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG--- 124 (372)
Q Consensus 49 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 124 (372)
.+...|++++|++.+..-... -+|.. .+......+.+.|+.++|..+|..+++.+ |.+...|..|..+..-..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 345566666666666554332 23333 33345556666666666666666666665 444445555555442221
Q ss_pred --CHHHHHHHHHhcccCCc--chHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHH
Q 017414 125 --KIGKALQVFENMKNKSV--ITWTTMIAGLALHGLG-REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 125 --~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
..+...++|+++....+ .+...+.-.+.....+ ..+..++..+...|+++ +|..+-..|......+-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 34555566665543211 1111111111111112 33455666677777653 4555555566555555555555
Q ss_pred HHhHHhc-------------CCCcCH--HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChhH
Q 017414 200 NIMKSRY-------------GIEPKI--EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 200 ~~~~~~~-------------~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ 262 (372)
....... .-+|+. .++..+...|-..|++++|++.+++. ...|+ +..|..-...+-..|++.+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 5544221 113444 34466678888999999999999877 44565 5677788888999999999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
|.+.++.+..+++.|...-.-.+..+.+.|+.++|.+++...-..+.
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999988887777888888999999999999988766555
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.26 E-value=5.2e-08 Score=85.86 Aligned_cols=302 Identities=11% Similarity=-0.049 Sum_probs=193.3
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChh---hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVI---SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 78 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 78 (372)
+|.....|..+...+...|+.+.+.+.+....+ ++.. ........+...|++++|.+.+++..+.. +.+...+
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHH
Confidence 466677888888888888988887777766543 2222 22333455678899999999999998753 3344444
Q ss_pred HH---HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHH
Q 017414 79 LA---ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLA 152 (372)
Q Consensus 79 ~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 152 (372)
.. ........+..+.+.+.+... ....+........+...+...|++++|...+++..+ .+...+..+..++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE 159 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 42 222222345555555555541 111122334455667789999999999999998764 34567888999999
Q ss_pred hcCChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH-H--HHHHHHHhcC
Q 017414 153 LHGLGREALDMFSRMERARV-KPNE--ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY-G--CMIDLLGRAG 226 (372)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g 226 (372)
..|++++|...+++...... .|+. ..+..+...+...|++++|..+++.+.......+..... + .++..+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999999887532 2232 235567788999999999999999986321111222211 1 2333333444
Q ss_pred CHHHHHHH---HhhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC-C---C-----CcchHHHHHHHHHH
Q 017414 227 YLQEAEKL---LRRM----PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE-P---H-----NSGNYAILSNIYAI 290 (372)
Q Consensus 227 ~~~~a~~~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~ 290 (372)
....+.+. .... +.............++...|+.+.|...++.+.... . . ..........++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 32222222 1111 111112222345667788899999999999887622 1 1 23344556667789
Q ss_pred cCCchhHHHHHHHHHhCC
Q 017414 291 LGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 291 ~g~~~~a~~~~~~m~~~g 308 (372)
.|++++|.+.+......+
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999998876543
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=8.4e-09 Score=80.09 Aligned_cols=190 Identities=15% Similarity=0.077 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 121 (372)
+.-.|...|.+.|++..|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 35556666777777777777777776653 3344566666666777777777777777766654 445566666666666
Q ss_pred hcCCHHHHHHHHHhccc-C----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHH
Q 017414 122 KSGKIGKALQVFENMKN-K----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 122 ~~g~~~~A~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 196 (372)
..|++++|...|++... | -..+|..+.-+..+.|+.+.|.+.|++.++... -...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 66666666666665542 3 224566666666666666666666666665531 12334455555556666666666
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
.+++....+ ..++..+.-..|+.--+.|+.+.+.+.=.
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 666666542 23555555555555555555555544333
No 72
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=4.9e-08 Score=83.59 Aligned_cols=346 Identities=12% Similarity=0.101 Sum_probs=240.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH----HHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI----AML 79 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~ 79 (372)
.|+.-.|++.|+.=.+.+.++.|..++++.. .|++.+|---...--+.|+...|..+|....+. + .|.. .+.
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-~-~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-L-GDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-h-hhHHHHHHHHH
Confidence 5899999999999999999999999999865 489999998888888999999999999998764 1 1222 222
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc-------------------------------------------CCCCchhHHHHH
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQY-------------------------------------------GLNTIVPLNNAL 116 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------~~~~~~~~~~~l 116 (372)
+....=.+...++.|.-+|...+.. .-+.|-.+|-..
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy 328 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence 2222222334444444444333211 014455667777
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCc-----chHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNKSV-----ITWTTMIAG--------LALHGLGREALDMFSRMERARVKPNEITFIAIL 183 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 183 (372)
++.-...|+.+...++|++....-+ ..|.-.|-. -....+.+.+.++|+..++. ++-...||..+=
T Consensus 329 lrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiW 407 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIW 407 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHH
Confidence 7888888999999999998764211 123322222 13467899999999998884 444556666443
Q ss_pred HHh----cccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc
Q 017414 184 SAC----CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY 257 (372)
Q Consensus 184 ~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 257 (372)
-.| .+..++..|.+++..+. |..|...++-..|..=.+.++++.+..+|++. ...| +-.+|......-...
T Consensus 408 lmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 408 LMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHh
Confidence 333 46788999999999999 88999999999999999999999999999997 6666 677899999888999
Q ss_pred CChhHHHHHHHHHHHhCCC--CcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeC-----
Q 017414 258 GDVELGECALQHLIKLEPH--NSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAG----- 330 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~----- 330 (372)
|+.+.|..+|.-++..... ....|-..|..-...|.++.|..+++.+.+..--...++++.........--.+
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~ 564 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAE 564 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhh
Confidence 9999999999999873311 123566667777789999999999999987644333333332211100000000
Q ss_pred -CCCCCChHHHHHHHHHHHHHHHHcCcc
Q 017414 331 -DTSHPDFDRLYQILCKINGQMKFAEHL 357 (372)
Q Consensus 331 -~~~~~~~~~~~~~~~~~~~~m~~~g~~ 357 (372)
.........+..++++....++..+-+
T Consensus 565 ~e~~~~~~~~AR~iferAn~~~k~~~~K 592 (677)
T KOG1915|consen 565 LEITDENIKRARKIFERANTYLKESTPK 592 (677)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHhcCcH
Confidence 001114556666677777777666543
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=1.6e-08 Score=78.51 Aligned_cols=199 Identities=16% Similarity=0.020 Sum_probs=155.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHh
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLAL 153 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 153 (372)
+...|.-.|.+.|+...|..-+++.++.. +.+..+|..+...|.+.|..+.|.+-|++..+ .+..+.|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 45566777888899999999999988875 55677888888889999999999998887654 456788888888899
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 017414 154 HGLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 232 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 232 (372)
.|++++|...|++......-|. ..+|..+.-+..+.|+.+.|...|++..+ ..+....+...+.+.....|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999988887532222 35677776667788999999999988884 33334566677888888889999998
Q ss_pred HHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 233 KLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 233 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
..++.. ...++..+....|......|+.+.+-+.=..+.+..|.++
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 888887 4447777777778888888888888888778877888654
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.22 E-value=4.5e-08 Score=88.34 Aligned_cols=288 Identities=14% Similarity=0.061 Sum_probs=197.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--CCh-hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTE--KNV-ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA-ALSACA 86 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~ 86 (372)
+.-....++...|++++|++.++.-.. .|. .........+.+.|+.++|..+|..+++.+ |+...|.. +..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHh
Confidence 334456678899999999999988665 454 456778899999999999999999999975 66665554 444442
Q ss_pred c-----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccCCc-chHHHHHHHHHhcCChhH
Q 017414 87 Q-----LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI-GKALQVFENMKNKSV-ITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 87 ~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 159 (372)
- ..+.+...++++.+.+.- |.......+.-.+.....+ ..+..++..+.+.++ .+++.+-..|......+-
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 2 235677788888887653 3222222222112221122 234444555555555 566666666665555555
Q ss_pred HHHHHHHHHHc----C----------CCCCH--HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHH
Q 017414 160 ALDMFSRMERA----R----------VKPNE--ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLL 222 (372)
Q Consensus 160 a~~~~~~~~~~----~----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~ 222 (372)
..+++...... + -+|+. .++..+...|...|++++|.++.+...+. .|+ +..|..-.+.|
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~Karil 238 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH
Confidence 55666555432 1 12343 24456677788999999999999999952 455 68888889999
Q ss_pred HhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC--CCC-------cchHHHHHHHHHHc
Q 017414 223 GRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLE--PHN-------SGNYAILSNIYAIL 291 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~ 291 (372)
-..|++.+|.+.++.. ... -|...-+..+..+.+.|++++|...+....+.+ |.. .......+.+|.+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 333 366666777778899999999999998887644 221 12235668899999
Q ss_pred CCchhHHHHHHHHH
Q 017414 292 GRWNESGKIRKVMR 305 (372)
Q Consensus 292 g~~~~a~~~~~~m~ 305 (372)
|++..|++-|....
T Consensus 319 ~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 319 GDYGLALKRFHAVL 332 (517)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998666553
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.3e-09 Score=95.16 Aligned_cols=252 Identities=13% Similarity=0.051 Sum_probs=191.9
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHH
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 160 (372)
.+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+- |..+.-.|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 4567888999999999998875 667899999999999999999999999887654 556777788889999999999
Q ss_pred HHHHHHHHHcCCCC--------CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 017414 161 LDMFSRMERARVKP--------NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 232 (372)
Q Consensus 161 ~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 232 (372)
++.++.-+....+- +...-.. ..+.....+....++|-++....+..+|+.++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99999876643110 0000000 2233344556667777777665565678888899999999999999999
Q ss_pred HHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 233 KLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 233 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
+.|+.. .++| |..+|+.|...+....+.++|+..|++++++.|.-.++...|+..|...|.|++|.+.|=.....--.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999998 6777 67789999999999999999999999999999999999999999999999999999976554332111
Q ss_pred cCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 017414 311 KMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 354 (372)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 354 (372)
. .. .....++ .+.+++.|+..+-.|...
T Consensus 531 s--~~-------------~~~~~~~-se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 531 S--RN-------------HNKAPMA-SENIWQTLRLALSAMNRS 558 (579)
T ss_pred c--cc-------------cccCCcc-hHHHHHHHHHHHHHcCCc
Confidence 0 00 0000111 678888887777766543
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.18 E-value=1.5e-07 Score=85.17 Aligned_cols=299 Identities=19% Similarity=0.171 Sum_probs=186.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP-DEIAMLAAL 82 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~ 82 (372)
.|..+|..+.-++.+.|+++.+.+.|++... .....|+.+...|...|.-..|+.+.+........| |...+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5788999999999999999999999998765 345678889999999999889998888766543224 334443333
Q ss_pred HHHH-ccCChHHHHHHHHHHHHc--C----C-------------------------------------------CCchhH
Q 017414 83 SACA-QLGAVELGEWIHNYIEQY--G----L-------------------------------------------NTIVPL 112 (372)
Q Consensus 83 ~~~~-~~~~~~~a~~~~~~~~~~--~----~-------------------------------------------~~~~~~ 112 (372)
..|. +.+..+++..+-.++... + + +.|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 4343 445566655555554431 1 0 111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC--------------
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERA-RVK-------------- 173 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-------------- 173 (372)
..-+.--|+..++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 11233334445555555555554432 24556777777777777777777777665542 110
Q ss_pred ----CCHHHHHHHHH-----------------------------------------------------------------
Q 017414 174 ----PNEITFIAILS----------------------------------------------------------------- 184 (372)
Q Consensus 174 ----p~~~~~~~l~~----------------------------------------------------------------- 184 (372)
-...|...++.
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 00001111111
Q ss_pred ------------------HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CH
Q 017414 185 ------------------ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NA 244 (372)
Q Consensus 185 ------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~ 244 (372)
.+.+.+..++|...+.++.. -.+.....|......+...|+.++|.+.|... -+.| ++
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 11111122222222222221 11112233344444555667777777777665 5566 56
Q ss_pred HHHHHHHHHHHHcCChhHHHH--HHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 245 AIWGSLLAASNIYGDVELGEC--ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
....++...+...|+...+.. ++..+.+++|.++..|..|+..+.+.|+.++|.+.|......
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 678888899999999888888 999999999999999999999999999999999999877544
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=1.6e-09 Score=91.06 Aligned_cols=248 Identities=12% Similarity=0.044 Sum_probs=151.8
Q ss_pred HHhcCCHHHHHHHHhccCCC----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 017414 19 YAKVGDLNNARALFELMTEK----NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELG 94 (372)
Q Consensus 19 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 94 (372)
+.-.|++..++.-.+ .... +.....-+.+++...|+++.++ .+..+.. .|.......+...+....+.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 444688888886555 2221 2334566778888888876554 3343333 56666665555544443444444
Q ss_pred HHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 017414 95 EWIHNYIEQYGLN-TIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173 (372)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (372)
..-++........ .+..+.......+...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444333322222 23333333445666778888888888765 45666777788888888888888888888764 3
Q ss_pred CCHHHHHHHHHHhc----ccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHH
Q 017414 174 PNEITFIAILSACC----HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIW 247 (372)
Q Consensus 174 p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~ 247 (372)
.|. +..-+..++. ....+..|..+|+++.+ ...+++.+.+.+..++...|++++|.+++++. ...| +..+.
T Consensus 162 eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 343 3333444433 23468888888888875 45677778888888888888888888888775 3333 55566
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHHHHhCCCCc
Q 017414 248 GSLLAASNIYGDV-ELGECALQHLIKLEPHNS 278 (372)
Q Consensus 248 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 278 (372)
..++.+....|+. +.+.+++.++....|.++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 6677777777777 667778888888888665
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=2.6e-09 Score=89.77 Aligned_cols=245 Identities=12% Similarity=0.089 Sum_probs=165.9
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 127 (372)
+.+.-.|++..++.-.+ ........+.....-+.+++...|+.+.+. ..+.... .|.......+...+...++.+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556789999987666 332221223344556778888899877543 3443433 566666655555554445666
Q ss_pred HHHHHHHhcc-cC----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHh
Q 017414 128 KALQVFENMK-NK----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIM 202 (372)
Q Consensus 128 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 202 (372)
.+..-+++.. ++ +..........+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776666544 22 1222222334566789999999987653 35667777888999999999999999999
Q ss_pred HHhcCCCcCHHHHHHHHHHHH----hcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 203 KSRYGIEPKIEQYGCMIDLLG----RAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
. .+..|. +...+..++. -.+++.+|..+|+++ ...+++.+.+.+..+....|++++|+.++.++.+.+|.
T Consensus 158 ~---~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 Q---QIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp H---CCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred H---hcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 8 334443 3344444443 344789999999999 44578888999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHcCCc-hhHHHHHHHHHhC
Q 017414 277 NSGNYAILSNIYAILGRW-NESGKIRKVMRDM 307 (372)
Q Consensus 277 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 307 (372)
++.+...++.+....|+. +.+.+.+.+++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999988 5677788887654
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=3.9e-07 Score=75.11 Aligned_cols=295 Identities=11% Similarity=0.077 Sum_probs=218.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHH---HHHHhCCCccHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLI---AGYAQMDQPNEAITLFRRMQVENVKPDEIAM-LAAL 82 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~ 82 (372)
.++.-.--+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-+.+.++ ++||-..- ..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhc
Confidence 34444555677788889999999999998887777777665 578899999999999999988 57885432 2344
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCC--chhHH------------HHHHHHHHhcCCHHHHHHHHHhcccC---CcchHH
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNT--IVPLN------------NALIDMYAKSGKIGKALQVFENMKNK---SVITWT 145 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 145 (372)
..+.+.|.++.|..-|+.+++..... ....+ ...+..+...|+...|+.....+.+. |...|.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 56789999999999999999864211 11111 12344566788999999998888753 556777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHH----HHHH---
Q 017414 146 TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ----YGCM--- 218 (372)
Q Consensus 146 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l--- 218 (372)
.-..+|...|.+..|+.=++..-+..- -+..++..+-..+...|+.+.++...++.. .+.|+-.. |-.|
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHH
Confidence 788899999999999988877766543 344555566677788899999888888887 56676422 1111
Q ss_pred ------HHHHHhcCCHHHHHHHHhhC-CCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHH
Q 017414 219 ------IDLLGRAGYLQEAEKLLRRM-PFEANA-----AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 286 (372)
Q Consensus 219 ------i~~~~~~g~~~~a~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 286 (372)
+......+++.++++-.+.. ...|.. ..+..+-.++...+++.+|++...++++..|++..++..-..
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 12234567777777777665 445542 234455567778899999999999999999999999999999
Q ss_pred HHHHcCCchhHHHHHHHHHhC
Q 017414 287 IYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+|.....++.|+.-|+...+.
T Consensus 350 A~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhc
Confidence 999999999999988877654
No 80
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.07 E-value=3.2e-08 Score=94.69 Aligned_cols=201 Identities=14% Similarity=0.176 Sum_probs=172.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 017414 107 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--------SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEIT 178 (372)
Q Consensus 107 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 178 (372)
|.+...|-..|......++.++|.+++++..+. -...|.+++..-...|.-+...++|+++.+.. . .-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 556778889999999999999999999988742 22478888888788888889999999988752 2 2356
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAAS 254 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~ 254 (372)
|..|...|.+.+.+++|.++++.|.++++ .....|..+++.+.++.+-+.|..++.+. |.+.........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999998766 67788999999999999999999999887 3333555667777788
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 311 (372)
.+.|+.+++..+|+....-.|.....|..+++.-.++|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999999888864
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=7.9e-08 Score=77.60 Aligned_cols=284 Identities=11% Similarity=0.073 Sum_probs=209.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHc
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA-ALSACAQ 87 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~ 87 (372)
+.+++..+.+..+++.|++++..-.+ | +....+.|..+|....++..|-..|+++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 56777778899999999999877665 3 5567889999999999999999999998763 566665543 3456678
Q ss_pred cCChHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcc-cCCcchHHHHHHHHHhcCChhHHHHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIV--PLNNALIDMYAKSGKIGKALQVFENMK-NKSVITWTTMIAGLALHGLGREALDMF 164 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 164 (372)
.+.+..|.++...|... ++. .....-.......+++..+..++++.. +.+..+.+.......+.|+++.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 88899999888777643 221 111111223446788999999999988 466777777777788999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-------------CH--------HHHHHHHH---
Q 017414 165 SRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-------------KI--------EQYGCMID--- 220 (372)
Q Consensus 165 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~--------~~~~~li~--- 220 (372)
+...+-+--.....|+..+. ..+.|+.+.|.++..++.++ |+.. |+ -+-+.++.
T Consensus 168 qaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 99888654445567876654 45668999999999988865 5532 11 11233333
Q ss_pred ----HHHhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC
Q 017414 221 ----LLGRAGYLQEAEKLLRRMP----FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 292 (372)
Q Consensus 221 ----~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 292 (372)
.+.+.|+++.|.+.+-.|| -..|+.|...+.-. -..+++....+-+.-+.+++|-.+.+|..++..|++..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 3467899999999999993 23466666554322 23456777777888888889988899999999999999
Q ss_pred CchhHHHHHHH
Q 017414 293 RWNESGKIRKV 303 (372)
Q Consensus 293 ~~~~a~~~~~~ 303 (372)
-++-|.+++-+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 99999988754
No 82
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.04 E-value=5.2e-08 Score=89.38 Aligned_cols=203 Identities=16% Similarity=0.152 Sum_probs=132.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCCC----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEK----NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
.||..+|..+|.-|+..|+++.|- +|.-|.-. +...++.++.+..+.|+.+.+. .|...||..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 578899999999999999999998 88887642 3445666666666666655543 4666677777
Q ss_pred HHHHHccCChHH---HHHHHHHHH----HcCC-----------------CCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 82 LSACAQLGAVEL---GEWIHNYIE----QYGL-----------------NTIVPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 82 ~~~~~~~~~~~~---a~~~~~~~~----~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
..+|...||... +.+.+..+. ..|+ -|+.. ..+....-.|-++.+++++..+.
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCC
Confidence 777777776543 222111111 1111 11111 11222222333333333332221
Q ss_pred ---------------------------------c-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017414 138 ---------------------------------N-KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAIL 183 (372)
Q Consensus 138 ---------------------------------~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 183 (372)
+ ++..+|.+.+.+-..+|+.+.|..++.+|.+.|.+.+..-|..|+
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 1 466788888888888888888888888888888887777777766
Q ss_pred HHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC
Q 017414 184 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 227 (372)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 227 (372)
-+ .++...++.++.-|.+. |+.|+..|+...+-.+..+|.
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 44 67778888888888855 888888888777666666554
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=3.7e-06 Score=74.07 Aligned_cols=313 Identities=10% Similarity=-0.006 Sum_probs=189.0
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHH--
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPDEI-AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNA-- 115 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 115 (372)
...|..+...+...|+.+.+...+.+..+... .++.. ........+...|++++|...++...+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 34677777888888999998887777665421 22322 22233445678899999999999998874 445444442
Q ss_pred -HHHHHHhcCCHHHHHHHHHhcccCCc---chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc
Q 017414 116 -LIDMYAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191 (372)
Q Consensus 116 -l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 191 (372)
+.......|..+.+.+.+......+. .....+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222234566666666665333222 344456678899999999999999999874 3445677788889999999
Q ss_pred hHHHHHHHHHhHHhcCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC--C-HHHH-H--HHHHHHHHcCChhH
Q 017414 192 VELGRRYFNIMKSRYGIEPKI--EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA--N-AAIW-G--SLLAASNIYGDVEL 262 (372)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~--~-~~~~-~--~l~~~~~~~~~~~~ 262 (372)
+++|..++++........++. ..|..+...+...|++++|..++++. ...| . .... . .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988532212332 34557888999999999999999986 2223 1 1111 1 22333344454443
Q ss_pred HHHH---HHHHHHhCCCCc--chHHHHHHHHHHcCCchhHHHHHHHHHhCCCccC-CceeEEEeCCEEEEEEeCCCCCCC
Q 017414 263 GECA---LQHLIKLEPHNS--GNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM-PGCSYIEVSKRVHEFVAGDTSHPD 336 (372)
Q Consensus 263 a~~~---~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 336 (372)
+.+. ........|... ........++...|+.+.|..+++.+.......+ .+..+..+...+-. .......++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~-A~~~~~~g~ 322 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE-ALYAFAEGN 322 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH-HHHHHHcCC
Confidence 3333 122111112221 2223567778899999999999999866433210 00001000000000 001123456
Q ss_pred hHHHHHHHHHHHHHHHHcC
Q 017414 337 FDRLYQILCKINGQMKFAE 355 (372)
Q Consensus 337 ~~~~~~~~~~~~~~m~~~g 355 (372)
.+++.+.+.+.......-|
T Consensus 323 ~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 323 YATALELLGPVRDDLARIG 341 (355)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 7777777777666654443
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=4.7e-07 Score=74.98 Aligned_cols=289 Identities=12% Similarity=0.031 Sum_probs=144.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC--CChhhHHH-HHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 017414 14 TMVAGYAKVGDLNNARALFELMTE--KNVISWTT-LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 90 (372)
Q Consensus 14 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 90 (372)
++..+.-..-.+++|++++.++.. |+-...|. +..+|.+..-++-+.+++.-.++. ++-++...+..+....+.=+
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLIN 234 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhc
Confidence 455555566678888888888876 33334443 345667777778777777776664 23333444443333333211
Q ss_pred hHHHHHHHHH--------------HHHcC------------CCC-----chhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 017414 91 VELGEWIHNY--------------IEQYG------------LNT-----IVPLNNALIDMYAKSGKIGKALQVFENMKNK 139 (372)
Q Consensus 91 ~~~a~~~~~~--------------~~~~~------------~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 139 (372)
-..|..-... +.+.+ +-| -+..-..|+--|.+.++.++|..+.+++...
T Consensus 235 gr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt 314 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT 314 (557)
T ss_pred cchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC
Confidence 1111111111 11111 001 0112233555688899999999998888765
Q ss_pred CcchHHHHHHHHHhcCC-------hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC
Q 017414 140 SVITWTTMIAGLALHGL-------GREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK 211 (372)
Q Consensus 140 ~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 211 (372)
++.-|-.-.-.+++.|+ ..-|.+.|+-.-..+..-|. .---++..++.-..+++++..+++.+..- -...|
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD 393 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDD 393 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcc
Confidence 55444333333333332 33344444433222222111 11112233333344566667666666632 22223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHhCCCCcchH-HHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSL-LAASNIYGDVELGECALQHLIKLEPHNSGNY-AILSNI 287 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~-~~l~~~ 287 (372)
... ..+.++++..|++.+|+++|-++ +.+ .|..+|.++ .++|.+.+.++.|..++-++ ..|.+.... .....-
T Consensus 394 ~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 394 DFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIAND 470 (557)
T ss_pred hhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHH
Confidence 332 24566777777777777777666 211 244444443 34566666666665443222 112222222 223445
Q ss_pred HHHcCCchhHHHHHHHHHhC
Q 017414 288 YAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~ 307 (372)
|.+++.|=-|-+.|+.+...
T Consensus 471 CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHHHHHHHhhhHHHcc
Confidence 66666666666666666443
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.94 E-value=6.5e-06 Score=73.58 Aligned_cols=174 Identities=13% Similarity=0.066 Sum_probs=98.4
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA 80 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 80 (372)
.+..+.+.|..+.-.+....++++|++.|..... .|...|.-|...-++.|+++.......+..+.. +-....|..
T Consensus 70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~ 148 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIG 148 (700)
T ss_pred cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHH
Confidence 3456667777777777777777777777776553 344555555555556666666666655555531 223345556
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCC-CCchhHHHHH------HHHHHhcCCHHHHHHHHHhcccC--Ccc-hHHHHHHH
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGL-NTIVPLNNAL------IDMYAKSGKIGKALQVFENMKNK--SVI-TWTTMIAG 150 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~l~~~ 150 (372)
+..+.--.|+...|..+.+...+... .|+...+.-. .....+.|..++|.+.+..-... |-. .-..-...
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHH
Confidence 66666666777777777776665431 3444433222 12334556666666655544322 111 12233445
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 017414 151 LALHGLGREALDMFSRMERARVKPNEITFI 180 (372)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 180 (372)
+.+.+++++|..++..++.. -||...|.
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy 256 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLER--NPDNLDYY 256 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhh--CchhHHHH
Confidence 66677777777777777765 34544443
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.92 E-value=2.2e-07 Score=76.75 Aligned_cols=182 Identities=13% Similarity=-0.007 Sum_probs=125.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--C-c---chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHH
Q 017414 108 TIVPLNNALIDMYAKSGKIGKALQVFENMKNK--S-V---ITWTTMIAGLALHGLGREALDMFSRMERARVKPNE--ITF 179 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~ 179 (372)
.....+..++..+...|++++|...|+++.+. + . .++..+..++.+.|++++|+..++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566677888889999999999999887642 2 2 36677888889999999999999998876322111 234
Q ss_pred HHHHHHhccc--------CchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 017414 180 IAILSACCHV--------GLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 250 (372)
Q Consensus 180 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 250 (372)
..+..++... |+.+.|.+.++.+.+. .|+ ...+..+..... ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 4444555443 6788888888888854 333 223222221111 00000 0111245
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhCCCC---cchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 251 LAASNIYGDVELGECALQHLIKLEPHN---SGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
...+...|++++|...++.+.+..|++ +..+..++.++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567889999999999999999987654 468899999999999999999999988654
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.92 E-value=3.8e-06 Score=69.44 Aligned_cols=276 Identities=10% Similarity=0.001 Sum_probs=200.8
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHH---HHHHHHhCCCccHHHHHHHHHHhCCCCCC-----
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTT---LIAGYAQMDQPNEAITLFRRMQVENVKPD----- 74 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----- 74 (372)
+.+|.|..++-.-...|...|+-..|+.=|.++.+.-+..+.+ -...+.++|.+++|..-|+..+.......
T Consensus 66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 3455666666666778888898888888888887633333333 33567899999999999999987642111
Q ss_pred -------HHHH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCcc
Q 017414 75 -------EIAM--LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK---NKSVI 142 (372)
Q Consensus 75 -------~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 142 (372)
...+ ...+..+...|+...|+.....+++.. +-+...+..-..+|...|+..+|+.=++... ..+..
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe 224 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE 224 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH
Confidence 1112 233445667789999999999999874 6688899989999999999999987666544 45667
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHH---------HHHhcccCchHHHHHHHHHhHHhcCCC
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEI----TFIAI---------LSACCHVGLVELGRRYFNIMKSRYGIE 209 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 209 (372)
++.-+-..+...|+.+.++...++-++. .||.. .|..+ +....+.+++.++..-.+...+. .
T Consensus 225 ~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---e 299 (504)
T KOG0624|consen 225 GHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---E 299 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---C
Confidence 7777888889999999999988887765 45542 22211 12234556777777777777643 4
Q ss_pred cC-----HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHH
Q 017414 210 PK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 282 (372)
Q Consensus 210 ~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 282 (372)
|. ...+..+-.++...|++.+|++.-.+. .+.|| +.++.--..+|.....++.|+.-|+.+.+.++.+..+-.
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 43 223445566777889999999988776 66775 778888888999999999999999999999998765544
Q ss_pred HH
Q 017414 283 IL 284 (372)
Q Consensus 283 ~l 284 (372)
-+
T Consensus 380 Gl 381 (504)
T KOG0624|consen 380 GL 381 (504)
T ss_pred HH
Confidence 43
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.91 E-value=2.1e-07 Score=74.01 Aligned_cols=118 Identities=10% Similarity=0.082 Sum_probs=92.3
Q ss_pred cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH-HHcCC--hhHH
Q 017414 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS-NIYGD--VELG 263 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~-~~~~~--~~~a 263 (372)
.++.+++...++.... .-+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5666777777777664 33567788888888888888999988888887 4455 566677777654 56676 4889
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 264 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
.++++++.+.+|.++.++..++..+...|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999888888889889999999999999998886643
No 89
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.89 E-value=5.8e-06 Score=73.85 Aligned_cols=288 Identities=17% Similarity=0.214 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCC--C---ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTE--K---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 83 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 83 (372)
+.+|-..+..+.++|++.....+|++... | ....|...+......+-++-++.+|++.++. .|.. -..-+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHH
Confidence 34566677777888888888888877653 1 2345666666666666677777777777652 2322 344455
Q ss_pred HHHccCChHHHHHHHHHHHHc----------------------------------------CC--CCc--hhHHHHHHHH
Q 017414 84 ACAQLGAVELGEWIHNYIEQY----------------------------------------GL--NTI--VPLNNALIDM 119 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~----------------------------------------~~--~~~--~~~~~~l~~~ 119 (372)
.++..+++++|.+.+...... |+ -+| ...|++|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 556666666665555444311 11 112 2467788889
Q ss_pred HHhcCCHHHHHHHHHhcccC--CcchHHHHHHHH----------------------------------------------
Q 017414 120 YAKSGKIGKALQVFENMKNK--SVITWTTMIAGL---------------------------------------------- 151 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~---------------------------------------------- 151 (372)
|.+.|.+++|..+|++.... .+.-++.+..+|
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 99999999999988875532 111111111111
Q ss_pred --------------------HhcCChhHHHHHHHHHHHcCCCCC------HHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 152 --------------------ALHGLGREALDMFSRMERARVKPN------EITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 152 --------------------~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
...|+..+-...|.+.... +.|. ...|..+.+.|-..|+++.|..+|++..+-
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 1122333344444444332 2221 124555666666777777777777776632
Q ss_pred cCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCC-----------------CHHHHHHHHHHHHHcCChhH
Q 017414 206 YGIEPK---IEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEA-----------------NAAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 206 ~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~-----------------~~~~~~~l~~~~~~~~~~~~ 262 (372)
..+-- ..+|......=.+..+++.|++++++. |..| +...|..++...-..|-++.
T Consensus 417 -~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 417 -PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred -CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 22111 234444444555566677777777665 2111 23345555555555666677
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
...++++++++.--.|......+..+....-++++.++|+
T Consensus 496 tk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777776665555555555555555555666666664
No 90
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=9.9e-07 Score=75.27 Aligned_cols=237 Identities=11% Similarity=0.004 Sum_probs=115.2
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMY 120 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (372)
+..+-..+...++.++|+.+..++++. .|+ ..+|+....++...+ +++++...++.+.+.. +.+..+|+....++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 334444455556666666666666653 333 334444444444445 4566666666666554 34444555444444
Q ss_pred HhcCCH--HHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc---Cch
Q 017414 121 AKSGKI--GKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV---GLV 192 (372)
Q Consensus 121 ~~~g~~--~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~ 192 (372)
.+.|+. +++..+++++.+ .|..+|+....++...|+++++++.++++++.++. +...|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 444432 444555544443 23345555555555555555555555555554422 233333332222222 111
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHH----cCChhHHHHH
Q 017414 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNI----YGDVELGECA 266 (372)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~ 266 (372)
+ ...++..+...+. ...| |...|+.+...+.. .++..+|..+
T Consensus 196 ~--------------------------------~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 196 E--------------------------------AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred c--------------------------------ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 0 0012333333222 2233 34445555554444 2334456666
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHcC------------------CchhHHHHHHHHHhCCCccCCceeE
Q 017414 267 LQHLIKLEPHNSGNYAILSNIYAILG------------------RWNESGKIRKVMRDMGVKKMPGCSY 317 (372)
Q Consensus 267 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~~~g~~~~~~~~~ 317 (372)
+.++.+.+|.++.+...|++.|.... ..++|.++++.+. ...|....+|
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 66666666666666677777776532 2356777777772 4444443333
No 91
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.88 E-value=1.4e-06 Score=82.88 Aligned_cols=236 Identities=12% Similarity=0.030 Sum_probs=128.5
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--KN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
++.+...+..|+..|...+++++|.++.+...+ |+ ...|..+...+.+.++.+++..+ .+..
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 456666677777777777777777777765544 32 23344444455566655544443 2221
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChh
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGR 158 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 158 (372)
......++..+..+...+... ..+...+..|+.+|-+.|+.++|..+++++.+ .|+.+.|.+...|+.. +.+
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred --hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 122222222222233333332 22333455566666666666666666666554 2445666666666666 666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+|++++.+.... +...+++..+..+|.++.. ..+.+...+..+.+..... .
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~ 217 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------R 217 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------h
Confidence 666666554432 3334455666666666653 2122222222222222111 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 239 PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
+..--..++..+...|...++++++..+++.+++.+|.|..+...++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222334455556667777788888888888888888888778888887776
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=4.7e-07 Score=79.57 Aligned_cols=249 Identities=11% Similarity=0.017 Sum_probs=185.6
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 127 (372)
..+.+.|+..+|.-+|+..++.. +-+...|.-|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34568899999999999998874 4577899999999999999999999999999875 556788888999999999999
Q ss_pred HHHHHHHhcccCCc-chHHHHH---------HHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHhcccCchHHHH
Q 017414 128 KALQVFENMKNKSV-ITWTTMI---------AGLALHGLGREALDMFSRMER-ARVKPNEITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 128 ~A~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~ 196 (372)
.|...++.-..... ..|.... ..+..........++|-++.. .+..+|......|.-.|--.|.+++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99999887642110 0000000 112222334455566655544 443466777777777788899999999
Q ss_pred HHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 197 RYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAA-IWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 197 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
..|+.+.. +.| |..+||.|.-.++...+.++|+..|.+. .++|+-+ +...|.-+|...|.+.+|...|-.++.+
T Consensus 451 Dcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999993 455 5689999999999999999999999998 7888654 5666778899999999999999888875
Q ss_pred CCC-----C-----cchHHHHHHHHHHcCCchhHHHHH
Q 017414 274 EPH-----N-----SGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 274 ~p~-----~-----~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
.+. . ..+|..|=.++...++.|.+.++.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 433 1 136767766777777777555443
No 93
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=3.3e-07 Score=82.62 Aligned_cols=212 Identities=13% Similarity=0.031 Sum_probs=149.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc--cCCcchHHHHHHHHHhcCC
Q 017414 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK--NKSVITWTTMIAGLALHGL 156 (372)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 156 (372)
..+...+.+.|-...|..+++++. .|...+.+|...|+..+|..+..+.. +|+...|..+++......-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 344555666666666666666543 34456777777777777777665443 3566677777776666666
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
+++|.++.++.-.. .-..+.....+.++++++.+.|+.-.+- -+.-..+|..+.-+..+.+++..|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 77777766654322 1111112223357777777777766632 23355778788888888999999999888
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 237 RM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 237 ~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
.. ...|| ...|+.+-.+|.+.++..+|...++++.+.+-.+..+|...+....+.|.|++|.+.+.++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 87 56674 56799999999999999999999999999887788889888889999999999999999886543
No 94
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=2.9e-07 Score=83.01 Aligned_cols=190 Identities=20% Similarity=0.217 Sum_probs=162.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017414 105 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS 184 (372)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 184 (372)
+.+|-...-..+...+.+.|-...|..+|+++. .|...|.+|...|+..+|..+..+..+ -+|+...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 356666677788999999999999999999865 788889999999999999999998887 3789999999999
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 262 (372)
......-+++|+++.+....+ .-..+.....+.++++++.+.|+.- .++| ...+|..+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888899999999887653 1122333344588999999999876 5555 66789999999999999999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
|.+.|.....+.|++...|+.+..+|.+.|+..+|...+++..+-..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999877663
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.84 E-value=8.6e-06 Score=72.81 Aligned_cols=282 Identities=17% Similarity=0.146 Sum_probs=173.9
Q ss_pred cCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 017414 22 VGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIH 98 (372)
Q Consensus 22 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 98 (372)
.|+-++|......-.. .+.+.|..+.-.+....++++|++.|+.....+ +-+...+.-+.-.-.+.++++......
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3444444444433333 234567777766666777777777777777653 345556666655566667777777666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCcchHHHH------HHHHHhcCChhHHHHHHHHH
Q 017414 99 NYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTM------IAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~ 167 (372)
..+.+.. +.....|..++.++.-.|++..|..+.++..+ ++...+... .......|..+.|.+.+..-
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 6666653 33455667777777777888888777776653 233333222 23345667777777776654
Q ss_pred HHcCCCCCHHHH-HHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH-HHHHHHHHh-cCCHHHHHHHHhhC------
Q 017414 168 ERARVKPNEITF-IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY-GCMIDLLGR-AGYLQEAEKLLRRM------ 238 (372)
Q Consensus 168 ~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~-~g~~~~a~~~~~~~------ 238 (372)
... ..|...+ ..-...+.+.+++++|..++..+..+ .||..-| ..+..++.+ .+..+....+|...
T Consensus 212 e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 212 EKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred hhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 432 1222222 23345567788999999999999854 4554333 333334331 11111111222211
Q ss_pred -----------------------------------------------------------------C------------CC
Q 017414 239 -----------------------------------------------------------------P------------FE 241 (372)
Q Consensus 239 -----------------------------------------------------------------~------------~~ 241 (372)
+ -.
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 0 13
Q ss_pred CCHHHH--HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 242 ANAAIW--GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 242 ~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
|....| ..++..+-..|+++.|...++.+++..|.-+..|..-++.+...|+.++|...+++.+..+.+
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 444444 345667788899999999999999988877777888889999999999999999988766554
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=6.1e-06 Score=82.16 Aligned_cols=296 Identities=15% Similarity=0.052 Sum_probs=192.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC----CC--------hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH----H
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTE----KN--------VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE----I 76 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~ 76 (372)
......+...|++++|..++..... .+ ......+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 4455566678899998888876532 11 112233445566789999999999988763111121 2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCC---CC--chhHHHHHHHHHHhcCCHHHHHHHHHhccc-------CC----
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYGL---NT--IVPLNNALIDMYAKSGKIGKALQVFENMKN-------KS---- 140 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~---- 140 (372)
..+.+...+...|+++.|...++......- .+ .......+...+...|+++.|...+++... ++
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 345556667789999999999888774311 11 123445667788899999999998876542 11
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCC--HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH-
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERAR--VKPN--EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY- 215 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 215 (372)
...+..+...+...|++++|...+.+..... ..+. ...+..+...+...|+.+.|.+.+..+..-.........+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 1234455566777899999999998876531 1122 2344445667778899999999888875321111111111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHhhCC-CC-CCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHhC------CCCcc
Q 017414 216 ----GCMIDLLGRAGYLQEAEKLLRRMP-FE-ANAA----IWGSLLAASNIYGDVELGECALQHLIKLE------PHNSG 279 (372)
Q Consensus 216 ----~~li~~~~~~g~~~~a~~~~~~~~-~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~ 279 (372)
...+..+...|+.+.|...+.... .. .... .+..+..++...|++++|...++++.... +....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 112244456889999999987762 11 1111 13456667888999999999999988732 11234
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 280 NYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
+...++.++.+.|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 66778889999999999999999886644
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=7.1e-06 Score=71.75 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=56.3
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHH
Q 017414 221 LLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESG 298 (372)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 298 (372)
.+.+.|++..|...|.++ ...| |...|..-.-+|.+.|.+..|..-.+..++++|+....|.--+.++....+|+.|.
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777666 2234 55566666667777777777777777777777766666666666666667777777
Q ss_pred HHHHHHHh
Q 017414 299 KIRKVMRD 306 (372)
Q Consensus 299 ~~~~~m~~ 306 (372)
+.|.+-..
T Consensus 447 eay~eale 454 (539)
T KOG0548|consen 447 EAYQEALE 454 (539)
T ss_pred HHHHHHHh
Confidence 76665443
No 98
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.82 E-value=1.7e-05 Score=71.01 Aligned_cols=283 Identities=14% Similarity=0.172 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC--------
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTEKN-------VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP-------- 73 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-------- 73 (372)
-..|-.+.+.|-+.|+++.|..+|++..+.+ ..+|..-...-.+..+++.|+++.++.....-.|
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 3568888999999999999999999987732 2356666666667788999999888775421111
Q ss_pred ---C------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc----CC
Q 017414 74 ---D------EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----KS 140 (372)
Q Consensus 74 ---~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 140 (372)
- ...|...+..--..|-++....+|+.+....+. ++.+.......+-...-++++.++|++-.. |+
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 1 123444444455667888888888888887643 344433455555666678999999998664 34
Q ss_pred c-chHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHH--HHhcccCchHHHHHHHHHhHHhcCCCcC--H
Q 017414 141 V-ITWTTMIAGLAL---HGLGREALDMFSRMERARVKPNEITFIAIL--SACCHVGLVELGRRYFNIMKSRYGIEPK--I 212 (372)
Q Consensus 141 ~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 212 (372)
+ ..|+..+.-+.+ ....+.|..+|++.++ |++|...-+..|+ ..--+-|....|..+++++.. ++++. .
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l 622 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRL 622 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHH
Confidence 3 366666655543 3458999999999998 6776643332222 112245888899999999875 55554 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH---HHHHHHHHHcCChhHHHHHHHHHHHhC-CC-CcchHHHHHH
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIW---GSLLAASNIYGDVELGECALQHLIKLE-PH-NSGNYAILSN 286 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~ 286 (372)
..|+..|.--...--+.....+|++. ..-|+...- ..+...-.+.|..++|..++....++- |. +...|...=.
T Consensus 623 ~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 623 DMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHH
Confidence 66777776555444445556666665 334555443 334445678899999999999998855 43 4556777777
Q ss_pred HHHHcCCch
Q 017414 287 IYAILGRWN 295 (372)
Q Consensus 287 ~~~~~g~~~ 295 (372)
.=.+.|+-+
T Consensus 703 FEvrHGned 711 (835)
T KOG2047|consen 703 FEVRHGNED 711 (835)
T ss_pred HHHhcCCHH
Confidence 777888843
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.80 E-value=4.9e-07 Score=71.93 Aligned_cols=157 Identities=9% Similarity=-0.014 Sum_probs=107.9
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 017414 44 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123 (372)
Q Consensus 44 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (372)
..+-..+...|+-+....+....... .+-|.......+....+.|++..|...++++.... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55556666677777777766665432 23344555567777777788888888887777664 67777888888888888
Q ss_pred CCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHH
Q 017414 124 GKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN 200 (372)
Q Consensus 124 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 200 (372)
|+.+.|..-|.+..+ .+....+.+...+.-.|+.+.|..++......+.. |...-..+..+....|+++.|..+-.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 888888777776543 45667777777777788888888887777766432 44455556666777788888777665
Q ss_pred HhH
Q 017414 201 IMK 203 (372)
Q Consensus 201 ~~~ 203 (372)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 544
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.79 E-value=1.2e-06 Score=72.25 Aligned_cols=182 Identities=15% Similarity=0.026 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCch---hHHHHHHHHHHhcCCHHHHHHHHHhcccC---Ccc---
Q 017414 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV---PLNNALIDMYAKSGKIGKALQVFENMKNK---SVI--- 142 (372)
Q Consensus 72 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--- 142 (372)
......+..+...+.+.|+++.|...++.+.+.. +.+. ..+..+..++...|++++|...++++.+. +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456678888899999999999999999998864 3222 46677899999999999999999998752 222
Q ss_pred hHHHHHHHHHhc--------CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHH
Q 017414 143 TWTTMIAGLALH--------GLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE 213 (372)
Q Consensus 143 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 213 (372)
++..+..++... |++++|.+.|+.+... .|+. .....+.... .. ..... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~------~~~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YL------RNRLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HH------HHHHH---------H
Confidence 456666666654 7789999999999876 3432 2222111110 00 00000 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
....+...|.+.|++.+|...+++. +..| ....+..+..++...|++++|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1124566788889999998888887 2223 346778888888999999999988888776554
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=4.4e-07 Score=68.28 Aligned_cols=122 Identities=13% Similarity=0.012 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 017414 162 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 240 (372)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~ 240 (372)
.++++..+. .|+. +..+..++...|++++|...|+.+.. --+.+...|..+..++...|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444443 3432 33455666777777878777777773 22345677777777777788888888877776 33
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 241 EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 241 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
.| +...+..+..++...|++++|+..++.+.+..|.++..+.....+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44 56667777777777788888888888888877777766666555443
No 102
>PLN02789 farnesyltranstransferase
Probab=98.78 E-value=1.4e-05 Score=68.27 Aligned_cols=211 Identities=12% Similarity=-0.029 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCCCC---hhhHHHHHHHHHhCC-CccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTEKN---VISWTTLIAGYAQMD-QPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
..+++.+-..+...++.++|+.+.+.+.+.+ ..+|+.-..++...| ++++++..++++.+.. +-+..+|+....+
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3456677777888999999999999988743 345666666667777 5799999999999864 3455567766656
Q ss_pred HHccCCh--HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhc---CC
Q 017414 85 CAQLGAV--ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALH---GL 156 (372)
Q Consensus 85 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~---~~ 156 (372)
+.+.+.. +++..+++.+.+.. +.+..+|+....++...|+++++++.++++.+. |..+|+....++.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 6666653 67788888888876 668899999999999999999999999999864 556888877776654 22
Q ss_pred h----hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc----CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHh
Q 017414 157 G----REALDMFSRMERARVKPNEITFIAILSACCHV----GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 224 (372)
Q Consensus 157 ~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 224 (372)
. ++.++...+++... +-+...|+.+...+... +...+|...+.++.. .-+.+......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 2 45677776666653 34566777776666652 344567777777663 223356667777787775
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=2.1e-07 Score=70.03 Aligned_cols=108 Identities=7% Similarity=-0.030 Sum_probs=92.5
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 196 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
+.++++.. .+.|+ .+..+...+...|++++|...|++. ...| +...|..+..++...|++++|...|+++.++
T Consensus 13 ~~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45666666 23444 3556788899999999999999998 4455 7778899999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 274 EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 274 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
+|.++.++..++.++...|++++|...|+......
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999886643
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=2.3e-06 Score=80.40 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=118.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 017414 140 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCM 218 (372)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 218 (372)
++.++-.|.....+.|++++|..+++...+. .|+ ......+...+.+.+.+++|...+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 4778888888889999999999999988876 454 45666777888889999999999998884 334456777778
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchh
Q 017414 219 IDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 296 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 296 (372)
..++.+.|++++|..+|+++ .-.| +..++..+..++...|+.++|...|+++.+...+....|+.++. +...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 234 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLNA 234 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHHH
Confidence 88888999999999999888 2234 46788888888899999999999999998866445455554432 2233
Q ss_pred HHHHHHHHHhCC
Q 017414 297 SGKIRKVMRDMG 308 (372)
Q Consensus 297 a~~~~~~m~~~g 308 (372)
-..+++.+.-.+
T Consensus 235 ~~~~~~~~~~~~ 246 (694)
T PRK15179 235 DLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHcCccc
Confidence 344555554333
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=1.7e-08 Score=54.62 Aligned_cols=33 Identities=39% Similarity=0.678 Sum_probs=23.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 105 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
|++||..+|++|+++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.75 E-value=2.2e-06 Score=68.17 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=113.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 196 (372)
+..|...|+++.+....+++..+. ..+...++.++++..++...+.+ +.+...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888877766654433221 01223566778888888877764 457778888888999999999999
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHH-HhcCC--HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLL-GRAGY--LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLI 271 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (372)
..|++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++.
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998884 2244667777888764 67676 58999999888 4455 66777888888999999999999999999
Q ss_pred HhCCCCcchH
Q 017414 272 KLEPHNSGNY 281 (372)
Q Consensus 272 ~~~p~~~~~~ 281 (372)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9887765443
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=4.6e-06 Score=80.53 Aligned_cols=195 Identities=12% Similarity=0.126 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc-CCC---CchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--CcchHHHHHH
Q 017414 76 IAMLAALSACAQLGAVELGEWIHNYIEQY-GLN---TIVPLNNALIDMYAKSGKIGKALQVFENMKNK--SVITWTTMIA 149 (372)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~ 149 (372)
..|...+......++.++|.++.+++... ++. --..+|.++++.-..-|.-+...++|++..+- ....|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34444455555555555555555554432 100 01233444444444444444455555554432 1234555555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc--CHHHHHHHHHHHHhcCC
Q 017414 150 GLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP--KIEQYGCMIDLLGRAGY 227 (372)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 227 (372)
.|.+.+.+++|.++++.|.+. ..-....|...+..+.+.++-+.|..++.++.+. ++- ........+..-.+.|+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCC
Confidence 555555555555555555543 2223344555555555555555555555555531 111 12222333333344555
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 228 LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 228 ~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
.+.+..+|+.. .-.| -...|+.++..-.++|+.+.+..+|+++..+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 55555555544 1111 3334555555555555555555555555553
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=5.9e-05 Score=60.42 Aligned_cols=251 Identities=13% Similarity=0.036 Sum_probs=153.8
Q ss_pred HHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 017414 17 AGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELG 94 (372)
Q Consensus 17 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 94 (372)
+-+.=.|++..++..-..... .+...-.-+.++|...|.+...+.- ..... .|.......+......-++.+.-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 334445777766665544332 2334444556777777776654432 22222 33334443333333333443332
Q ss_pred -HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 017414 95 -EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173 (372)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (372)
.++.+.+.......+......-+..|+..|++++|++..+... +..+...-...+.+..+.+-|.+.+++|.+..
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-- 167 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID-- 167 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--
Confidence 3344444443333333333334566888889999988888733 44444444566778888888888888888642
Q ss_pred CCHHHHHHHHHHhc----ccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHH
Q 017414 174 PNEITFIAILSACC----HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIW 247 (372)
Q Consensus 174 p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~ 247 (372)
+..|.+-|..++. ..+.+..|.-+|+++.+ +.+|++.+.+...-++...|++++|..+++.. ....++.+.
T Consensus 168 -ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 168 -EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred -hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 4556665555543 45568888888888885 56788888888888888888999998888887 333466666
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHHHHhCCCCc
Q 017414 248 GSLLAASNIYGDV-ELGECALQHLIKLEPHNS 278 (372)
Q Consensus 248 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 278 (372)
..++.+....|.. +...+.+.++....|.++
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 6666666666655 445567777777777665
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=4e-06 Score=66.85 Aligned_cols=155 Identities=16% Similarity=0.127 Sum_probs=100.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHh
Q 017414 145 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 224 (372)
Q Consensus 145 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 224 (372)
..+-..+...|+-+....+..+..... +.|.......+....+.|++..|...++++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 444555666666666666666544321 22334444566666777777777777777763 456667777777777777
Q ss_pred cCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 225 AGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 225 ~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
.|+++.|..-|.+. .+.| +....+.+...+.-.|+.+.|..++.......+.++.+-..|.......|++++|.++..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777776665 3333 334456666666677777777777777776666666677777777777777777766553
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.00014 Score=64.06 Aligned_cols=117 Identities=12% Similarity=0.042 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 017414 192 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEA-NAAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
.+....+++++.......|+ -+|..++..-.+..-+..|..+|.++ +..+ ++.+..+++.-++ .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44445555555544333433 34556666666777777888888777 3333 4555566665444 46777788888
Q ss_pred HHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 268 QHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 268 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
+--++..++++..-...+.-+...++-..+..+|++....++.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 8777777777766667777777777777777788777766554
No 111
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=8.5e-05 Score=66.00 Aligned_cols=77 Identities=10% Similarity=0.082 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHhhC-CCCCCHHHHHHHHH-HHHHc-CChhHHHHHHHHHHHhCCCC-cchHHHHHHHHHHcCCchhHHHH
Q 017414 225 AGYLQEAEKLLRRM-PFEANAAIWGSLLA-ASNIY-GDVELGECALQHLIKLEPHN-SGNYAILSNIYAILGRWNESGKI 300 (372)
Q Consensus 225 ~g~~~~a~~~~~~~-~~~~~~~~~~~l~~-~~~~~-~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~ 300 (372)
.+.-+.+.++-... +..|... +..++. +.... ..+..+..++....+..|.+ ..+....+......|+++.|.++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34455566666565 3334433 344444 33332 34788888888888888876 34556667788899999999999
Q ss_pred HH
Q 017414 301 RK 302 (372)
Q Consensus 301 ~~ 302 (372)
+.
T Consensus 399 l~ 400 (652)
T KOG2376|consen 399 LS 400 (652)
T ss_pred HH
Confidence 98
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=4e-08 Score=53.10 Aligned_cols=32 Identities=38% Similarity=0.599 Sum_probs=23.5
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 207 GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777765
No 113
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=5.4e-05 Score=67.19 Aligned_cols=144 Identities=13% Similarity=0.176 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHH--------HhHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN--------IMKSRYGIEPKIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (372)
+..+.+++...-+....-........+......|+++.|.+++. .+.+ .+..|. +...+...+.+.++.
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChh--HHHHHHHHHHhccCC
Confidence 44555555554443222223344445555667788888888877 4442 133333 334556666666655
Q ss_pred HHHHHHHhhC-----CCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHH
Q 017414 229 QEAEKLLRRM-----PFEANAA----IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 299 (372)
Q Consensus 229 ~~a~~~~~~~-----~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 299 (372)
+-|.+++.+. .-.+... ++..+...-.+.|+.++|..+++++.+.+|++..+...++.+|++. +.+.|..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 5555554443 1112222 3333344445679999999999999999999999999999999887 6788877
Q ss_pred HHHHH
Q 017414 300 IRKVM 304 (372)
Q Consensus 300 ~~~~m 304 (372)
+-+.+
T Consensus 513 l~k~L 517 (652)
T KOG2376|consen 513 LSKKL 517 (652)
T ss_pred HhhcC
Confidence 76544
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=0.0001 Score=73.48 Aligned_cols=290 Identities=14% Similarity=0.080 Sum_probs=177.2
Q ss_pred HHHhcCCHHHHHHHHhccCC----CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCC--C----CCCH--HHHHHHHHHH
Q 017414 18 GYAKVGDLNNARALFELMTE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN--V----KPDE--IAMLAALSAC 85 (372)
Q Consensus 18 ~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~----~p~~--~~~~~l~~~~ 85 (372)
.+...|+++.+..+++.++. .+..........+...|++++|...+......- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34445666666666666532 122333344455567788999888888765421 0 1111 1122233455
Q ss_pred HccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhccc-------CC--cchHHHHHHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTI----VPLNNALIDMYAKSGKIGKALQVFENMKN-------KS--VITWTTMIAGLA 152 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~ 152 (372)
...|+++.|...++...+.-...+ ....+.+...+...|++++|...+++... +. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678899999999988776311112 12345566777889999999988887652 11 134456677788
Q ss_pred hcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhc-CCCc--CHHHHHHHHHHH
Q 017414 153 LHGLGREALDMFSRMERA----RVK--P-NEITFIAILSACCHVGLVELGRRYFNIMKSRY-GIEP--KIEQYGCMIDLL 222 (372)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~~li~~~ 222 (372)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+...-. ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999988876652 211 1 12334445556677799999998888775421 1112 233444566777
Q ss_pred HhcCCHHHHHHHHhhC----CCCCCHHHH-----HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch----HHHHHHHHH
Q 017414 223 GRAGYLQEAEKLLRRM----PFEANAAIW-----GSLLAASNIYGDVELGECALQHLIKLEPHNSGN----YAILSNIYA 289 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~ 289 (372)
...|++++|...+.+. ........+ ...+..+...|+.+.|...+.......+..... +..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999998887776 111111111 111234455788888888877655422222211 456788899
Q ss_pred HcCCchhHHHHHHHHHhC
Q 017414 290 ILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~ 307 (372)
..|++++|...+++....
T Consensus 703 ~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 703 LLGQFDEAEIILEELNEN 720 (903)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999887543
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=3.5e-05 Score=61.26 Aligned_cols=192 Identities=13% Similarity=0.105 Sum_probs=129.8
Q ss_pred ChHHHHHHHHHHHHc---C-CCCch-hHHHHHHHHHHhcCCHHHHHHHHHhcccC--C-cchHHHHHHHHHhcCChhHHH
Q 017414 90 AVELGEWIHNYIEQY---G-LNTIV-PLNNALIDMYAKSGKIGKALQVFENMKNK--S-VITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~ 161 (372)
+.++..+++..+... | ..++. .+|..++-+....|+.+.|..+++++... + ..+-..-..-+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 445555555555421 2 23332 33445555566677778888777776542 2 122222223345678899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 017414 162 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 240 (372)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~ 240 (372)
++|+.+++.+ +.|.+++..-+...-..|.--.|++-+....+ .+..|...|.-+...|...|++++|.-+++++ -+
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 9999998875 45667777666666667777788888888886 66789999999999999999999999999998 44
Q ss_pred CCC-HHHHHHHHHHHHHc---CChhHHHHHHHHHHHhCCCCcchHHHH
Q 017414 241 EAN-AAIWGSLLAASNIY---GDVELGECALQHLIKLEPHNSGNYAIL 284 (372)
Q Consensus 241 ~~~-~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~l 284 (372)
+|. ...+..+...+... .+.+.+.++|.+..++.|.+...+..+
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 564 44455555554443 456788899999999988655444433
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=4.3e-05 Score=66.43 Aligned_cols=119 Identities=17% Similarity=0.123 Sum_probs=102.4
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChhH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ 262 (372)
.+...|.++.|+..++.+.. ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 45567899999999999985 44556677777889999999999999999998 55676 5667788889999999999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
|+.+++.....+|+++..|..|..+|...|+..++.....+..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888777663
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.2e-05 Score=62.77 Aligned_cols=243 Identities=13% Similarity=0.084 Sum_probs=157.0
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 127 (372)
+-+.-.|++..++..-...... +-+...-.-+.++|...|.+..... .+.... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 3344567777776655544332 1233333345567777776654322 222222 333333333333333344433
Q ss_pred HHH-HHHHhcccC----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHh
Q 017414 128 KAL-QVFENMKNK----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIM 202 (372)
Q Consensus 128 ~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 202 (372)
+-+ ++.+.+..+ +......-...|+..|++++|++....... ......+ ...+.+..+++-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----lE~~Al~--VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----LEAAALN--VQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----HHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 332 334444333 222333344568899999999999876221 1222222 33456777899999999999
Q ss_pred HHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 203 KSRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
.+ + .+..+.+.|..++.+ .+++.+|.-+|+++ ...|+..+.+....++...|++++|+.+++.++..++.
T Consensus 164 q~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 84 2 345666667666654 45789999999999 47789999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHcCCchhHHH-HHHHHHh
Q 017414 277 NSGNYAILSNIYAILGRWNESGK-IRKVMRD 306 (372)
Q Consensus 277 ~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 306 (372)
+|.+...++.+-...|.-.++.. .+.+++.
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999988888887766544 6666644
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.59 E-value=1.7e-06 Score=64.25 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
......+...+...|++++|..+|+-+ ...| +...|..|..++...|++++|+..|..+..++|++|.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345556777788999999999999998 4455 56678888889999999999999999999999999999999999999
Q ss_pred HcCCchhHHHHHHHHHh
Q 017414 290 ILGRWNESGKIRKVMRD 306 (372)
Q Consensus 290 ~~g~~~~a~~~~~~m~~ 306 (372)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999987754
No 119
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.56 E-value=3.2e-06 Score=73.65 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV 91 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 91 (372)
-..|+..+...++++.|+.+|+++.+.++.....++..+...++..+|++++++..+.. +-+...+..-...+.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 33444555555566666666666655544455555555555555556666665555432 23444444444555555666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 92 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
+.|..+.+++.+.. |.+-.+|..|..+|...|+++.|+..++.+.
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666655542 3334455556666666666666665555543
No 120
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.56 E-value=4.9e-06 Score=72.55 Aligned_cols=127 Identities=12% Similarity=0.126 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc
Q 017414 112 LNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191 (372)
Q Consensus 112 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 191 (372)
...+|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..... +-+...+..-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 345667777888999999999999998888888888999988999999999999988753 3456666667777889999
Q ss_pred hHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 017414 192 VELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA 242 (372)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 242 (372)
.+.|..+.+++.+ ..| +..+|..|..+|...|+++.|+..++.+|..+
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999984 345 45799999999999999999999999886444
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=2.8e-05 Score=73.35 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE-IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
+..+-.|.....+.|++++|+.+++...+. .|+. .....+..++.+.+++++|....++..... +.+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 344444444445555555555555554442 3332 233344444455555555555555544443 333344444444
Q ss_pred HHHhcCCHHHHHHHHHhcccCC---cchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 119 MYAKSGKIGKALQVFENMKNKS---VITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
++.+.|++++|..+|+++..++ ..++..+..++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555555444322 23444444444455555555555554444
No 122
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=7.2e-05 Score=70.50 Aligned_cols=243 Identities=15% Similarity=0.128 Sum_probs=130.0
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
.+..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++..+++..-+|.+. +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3457888888888888888888877443 355678888899999999999888888887776566554 46888
Q ss_pred HHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc--------------------CCCCCHHH
Q 017414 119 MYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA--------------------RVKPNEIT 178 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~p~~~~ 178 (372)
+|++.+++.+.++++. -||.........-|...|.++.|.-+|...-.- .-..+..|
T Consensus 1175 AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~kt 1251 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKT 1251 (1666)
T ss_pred HHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhH
Confidence 8888888877766543 233333344444444444444444333321100 00113345
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNI 256 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 256 (372)
|.-+-.+|...+.+.-|. +. ..++-....-..-++.-|-..|-+++...+++.. |++. .-..|+.|.-.|++
T Consensus 1252 WK~VcfaCvd~~EFrlAQ-----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLAQ-----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHhchhhhhHHH-----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 555555554444443321 11 0011122333444555666666666666666554 3221 23334444444444
Q ss_pred cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 257 YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
. ++++..+.++-.... - ..--+++++..+.-|.+..=+|.+-
T Consensus 1326 y-kp~km~EHl~LFwsR-v----NipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1326 Y-KPEKMMEHLKLFWSR-V----NIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred c-CHHHHHHHHHHHHHh-c----chHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 223333333322220 0 1113455566666666665555443
No 123
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=3.6e-05 Score=70.91 Aligned_cols=280 Identities=11% Similarity=0.031 Sum_probs=137.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC-----------CCh-hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE-----------KNV-ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE 75 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 75 (372)
+..+|..+..+|.+.++++-|.-.+-.|.. .|. ..-.-..-.....|-.++|+.+|++-++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 445677777777777777777666666643 011 22222223334556666666666666542
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC----------------
Q 017414 76 IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---------------- 139 (372)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------- 139 (372)
..|=..|...|.+++|.++-+.--+. . -..||.....-+...++.+.|++.|++...+
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 22334455666666666654432211 1 1234444555566667777777777654321
Q ss_pred -------CcchHHHHHHHHHhcCChhHHHHHHHHHHHc----------C----------CCCCHHHHHHHHHHhcccCch
Q 017414 140 -------SVITWTTMIAGLALHGLGREALDMFSRMERA----------R----------VKPNEITFIAILSACCHVGLV 192 (372)
Q Consensus 140 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~----------~~p~~~~~~~l~~~~~~~~~~ 192 (372)
|...|.=....+-..|+.+.|+.+|....+. | -.-|......+.+.|...|++
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDV 983 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHH
Confidence 3333333344444566666666666654431 0 012333444556666666666
Q ss_pred HHHHHHHHHhHHhcC---CCcCHHHHHHHHHHHHhc--CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 017414 193 ELGRRYFNIMKSRYG---IEPKIEQYGCMIDLLGRA--GYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 193 ~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
.+|..+|.++..-.+ +......-..|....... .+.-.|-..|++.|.. +...+..|-+.|.+.+|.++.
T Consensus 984 ~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 984 VKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHH
Confidence 666666665542100 000000001111111111 1223334444444322 122333455666666665543
Q ss_pred HHH---------H-HhCCC-CcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 268 QHL---------I-KLEPH-NSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 268 ~~~---------~-~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
-+- . +++|. +|.....-.+.+....++++|..++...
T Consensus 1059 F~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 211 1 24443 5656666667777777788777766544
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.52 E-value=2.9e-06 Score=63.28 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 290 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 290 (372)
.....+...+...|++++|...++.+ ...| +...+..+...+...|+++.|...++.+.+.+|.++.++..++.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 33444555556666666666666655 2223 445555555566666666666666666666666666666666666666
Q ss_pred cCCchhHHHHHHHHHh
Q 017414 291 LGRWNESGKIRKVMRD 306 (372)
Q Consensus 291 ~g~~~~a~~~~~~m~~ 306 (372)
.|++++|...++....
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655544
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=3.7e-05 Score=70.87 Aligned_cols=240 Identities=14% Similarity=0.132 Sum_probs=157.8
Q ss_pred cHHHHHHHHH--HHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhC-C--------CCCCHH
Q 017414 8 LYKFWNTMVA--GYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE-N--------VKPDEI 76 (372)
Q Consensus 8 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~--------~~p~~~ 76 (372)
|..+--++++ .|..-|+++.|.+-...+. +...|..+.+.|.+.++.+-|.-.+-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 3444444443 3556788888877665544 4467888999999988888776666555321 1 1222 2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-cchHHHHHHHHHhcC
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS-VITWTTMIAGLALHG 155 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~ 155 (372)
+=..+.-.....|.+++|..+|++-++. ..|=..|-..|.|++|.++-+.-.+-. -.+|......+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2222333445788999999999887764 345567888999999999877543322 246777777777788
Q ss_pred ChhHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHH
Q 017414 156 LGREALDMFSRM----------ERAR---------VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG 216 (372)
Q Consensus 156 ~~~~a~~~~~~~----------~~~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 216 (372)
+.+.|++.|++. +... ...|...|.--.......|+++.|+.+|..+.+ |.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~f 942 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YF 942 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hh
Confidence 888888888753 1111 112344455555566678899999998888874 44
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 217 CMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 217 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
++++..|-.|+.++|-++.++-+ |......|.+.|-..|++.+|..+|.++..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 56777777777777777777754 555566677777777777777777665543
No 126
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.48 E-value=7.9e-05 Score=68.19 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=106.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDL 221 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~ 221 (372)
.|......+.+.+..++|...+.+.... .+-....|......+...|.+++|.+.|.... -+.| ++....++..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 4556667788899999999888887765 23455566666677788899999999999888 4455 46788899999
Q ss_pred HHhcCCHHHHHH--HHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 222 LGRAGYLQEAEK--LLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 222 ~~~~g~~~~a~~--~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
+.+.|+..-|.. ++..+ .+.| +...|..+...+.+.|+.+.|...|+.+.++.+.+|
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999998777777 88777 5556 678899999999999999999999999999886655
No 127
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.47 E-value=9.2e-06 Score=76.08 Aligned_cols=100 Identities=13% Similarity=0.034 Sum_probs=42.0
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCC-----hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKN-----VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA 77 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 77 (372)
++++.|...+..+.+.|++..+++.|..+.-...+.+ ...|--..-.|.+.++...|+.-|+...+.. +-|...
T Consensus 520 eLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~ 598 (1238)
T KOG1127|consen 520 ELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNL 598 (1238)
T ss_pred cCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHH
Confidence 3444444444444444444444444444422221111 0111122223334444444444444444322 224444
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQ 103 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 103 (372)
|..+..+|...|.+..|.++|.++..
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHh
Confidence 55555555555555555555554444
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=1.1e-05 Score=60.26 Aligned_cols=113 Identities=10% Similarity=0.008 Sum_probs=85.9
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 017414 163 MFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 240 (372)
Q Consensus 163 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~ 240 (372)
.+++.... .| +......+...+...|++++|...++.+... .+.+...+..+..++...|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455544 33 3344556677788889999999999888752 3456778888888999999999999988887 33
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc
Q 017414 241 EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 279 (372)
Q Consensus 241 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 279 (372)
.| +...+..+...+...|++++|...++.+.+..|.+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5667777788888999999999999999999887664
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=2.1e-05 Score=68.29 Aligned_cols=182 Identities=13% Similarity=0.048 Sum_probs=131.4
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHH-HH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE-KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM-LA 80 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ 80 (372)
..+.|+...+...+.+......-..+-.++....+ .....+.-..-.+...|++++|+..++.+.+. .|+...| ..
T Consensus 268 ~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~ 345 (484)
T COG4783 268 KLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLEL 345 (484)
T ss_pred CCCCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHH
Confidence 35667777777777766665555555555444444 23333444444466888999999999998875 4555544 45
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCCh
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLG 157 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 157 (372)
....+...++.++|.+.++.+.... +......-.+..+|.+.|+..+|+.++++... .|+..|..|..+|...|+.
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 5678889999999999999998864 33366667788999999999999999988764 4678999999999999988
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 158 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 158 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
.++.....+ .+...|+++.|...+....+.
T Consensus 425 ~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 877765443 445568888888888888764
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.44 E-value=9.9e-05 Score=67.39 Aligned_cols=135 Identities=17% Similarity=0.174 Sum_probs=87.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNKSVI--TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 194 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 194 (372)
+.+......|.+|+.+++.+...+.. -|..+...|+..|+++.|.++|.+.- .++-.|..|.+.|.++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 44556667777777777777654332 35666677788888888887776421 24445667788888888
Q ss_pred HHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 017414 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQH 269 (372)
Q Consensus 195 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 269 (372)
|.++-.+.. |-..+...|..-..-+-..|++.+|.++|-.++ .|+. .|..|-+.|..+..+++..+
T Consensus 810 a~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 810 AFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 777766655 445555666666666667777777777776665 3433 34556666666666655544
No 131
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.44 E-value=6.9e-05 Score=68.38 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=106.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHH
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 160 (372)
.+.+......+.+|+.+++.+.... .....|..+.+.|+..|+++.|.++|-+.- .++--|..|.+.|+|.+|
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 3444556677888888887776553 234456778888899999999999887543 455667888899999998
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 017414 161 LDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPF 240 (372)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 240 (372)
.++-.+.. |.......|..-..-.-+.|.+.+|+++|-.+. .|+. -|..|-+.|..++.+++.++-.-
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 88766543 334444555555555667777777777765544 2332 35666677777777776666521
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 017414 241 EANAAIWGSLLAASNIYGDVELGECALQ 268 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 268 (372)
.--..|...+..-+-..|+...|+.-|-
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 2222344444444555555555554443
No 132
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00023 Score=67.33 Aligned_cols=237 Identities=15% Similarity=0.223 Sum_probs=152.8
Q ss_pred CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 017414 38 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL 116 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (372)
.|+..-+.-+.++...+-+.+-++++++..-.+..- .......|+-.-+-..+...+.++.+++-.-. .|+ +
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-chh------H
Confidence 466667777888888888888888888876432111 11122222222222334555556665555433 222 2
Q ss_pred HHHHHhcCCHHHHHHHHHhccc-------------------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 017414 117 IDMYAKSGKIGKALQVFENMKN-------------------------KSVITWTTMIAGLALHGLGREALDMFSRMERAR 171 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 171 (372)
...+...+-+++|..+|++... ..+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 3333344445555555544321 13468999999999999999999877542
Q ss_pred CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 017414 172 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251 (372)
Q Consensus 172 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~ 251 (372)
-|+..|.-++..+.+.|.+++-.+++..++++ .-.|.+. +.||-+|++.+++.+.++++. .|+......+.
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVG 1201 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHh
Confidence 25678999999999999999999999888865 4456554 478999999999988776653 36666677777
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
.-|...|.++.|.-++... ..|..|...+...|+++.|.+.-+
T Consensus 1202 drcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777776665533 244555555666666665554443
No 133
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=6.9e-05 Score=62.51 Aligned_cols=196 Identities=10% Similarity=0.078 Sum_probs=124.4
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCC----hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 017414 16 VAGYAKVGDLNNARALFELMTEKN----VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV 91 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 91 (372)
++-+....++..|+.+++--...+ ..+--.+..++.+.|++++|+..|..+.... .|+...+..|..+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 445666778888888877654321 1233445677788899999999998887754 56777777777777777888
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 017414 92 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERAR 171 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 171 (372)
.+|.++-... +.++--...|+..-.+.|+-.+-..+-+.+... ..---+|.+.....-.+++|+++|.+.+..
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 8887765442 233333445556666667666655555444322 233345555555666789999999998875
Q ss_pred CCCCHHHHHHHH-HHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 017414 172 VKPNEITFIAIL-SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 222 (372)
Q Consensus 172 ~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 222 (372)
.|.-...+.-+ -.|.+..-++-+.++++.-.. .++.++...+......
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--q~pdStiA~NLkacn~ 229 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--QFPDSTIAKNLKACNL 229 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 34555555433 345577778888888888775 3344444444444333
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.39 E-value=0.00017 Score=69.11 Aligned_cols=220 Identities=14% Similarity=0.148 Sum_probs=116.4
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 117 (372)
+...+..|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++...+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 3445666666666666666666666655543 33322 222333344444444433333 1 12
Q ss_pred HHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHH
Q 017414 118 DMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 195 (372)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 195 (372)
.......++.-...+...+.. .+..++..+..+|-+.|+.++|..+|+++++.. +-|....|.+...|+.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222222222222222222221 122355566677777777777777777777665 33556666666666666 77777
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-
Q 017414 196 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKL- 273 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 273 (372)
.+++.++... |...+++.++.+++.++ ...|+. ++.-.++.+++...
T Consensus 169 ~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d---------------~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 169 ITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDD---------------FDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCccc---------------chHHHHHHHHHHhhh
Confidence 7777666632 44555666667666666 222321 12222233333221
Q ss_pred C-CCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 274 E-PHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 274 ~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
+ ..-..++.-+-..|...++|+++..+++.+.+..-.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 1 112234555667788888999999999988765443
No 135
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.5e-05 Score=64.80 Aligned_cols=197 Identities=11% Similarity=0.037 Sum_probs=140.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHhcc
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA-ILSACCH 188 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~ 188 (372)
+++.+..+.+..++..|++++....+. +....+.+..+|....++..|-..|+++-.. .|...-|.. -..++-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 344455556666777777777655433 3456667777777888888888888887664 455444432 2345567
Q ss_pred cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH--HHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 017414 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMID--LLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECA 266 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 266 (372)
.+.+..|.++...|.+. ++...-..-+. ...+.+++..+..++++.+-+.+..+.........+.|+++.|.+-
T Consensus 91 A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 78888888888888741 22221111122 2336788899999999986566777777777777889999999999
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCce
Q 017414 267 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGC 315 (372)
Q Consensus 267 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 315 (372)
|+.+.+.+--.|..-..+..+..+.|+++.|++...++.++|++..|..
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 9999997755666666677788899999999999999999999977754
No 136
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=0.0002 Score=62.96 Aligned_cols=248 Identities=12% Similarity=0.012 Sum_probs=168.2
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHH-------
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNA------- 115 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 115 (372)
+..+.+...+..++..|++.+....+.. -+..-++....++...|.+..+...-....+.|.. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 5667777888888999999999888753 44444556667788888888877777776666522 2222332
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCchHH
Q 017414 116 LIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVEL 194 (372)
Q Consensus 116 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~ 194 (372)
+..+|.+.++++.|+..|.+...+... -....+....+++++......-. .|.. .-...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHH
Confidence 334566677888888888875432111 12223334455555555544433 2332 122223556778899999
Q ss_pred HHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 195 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
|...|.+++++ .+.|...|....-+|.+.|.+..|+.-.+.. ...|+ ...|..=..++....+++.|.+.|++..+
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999964 3667899999999999999999998876665 44454 34566666677788899999999999999
Q ss_pred hCCCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 273 LEPHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 273 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
.+|.+......+.++.........-.++.+
T Consensus 455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 999887776666666665433444444444
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=5.7e-05 Score=56.98 Aligned_cols=122 Identities=11% Similarity=0.109 Sum_probs=63.0
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc--hhHHHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPD---EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI--VPLNNALI 117 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 117 (372)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444443 3556666666666665542 122 12223344555666666666666666666542221 12233355
Q ss_pred HHHHhcCCHHHHHHHHHhcccC--CcchHHHHHHHHHhcCChhHHHHHHHH
Q 017414 118 DMYAKSGKIGKALQVFENMKNK--SVITWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
.++...|++++|+..++....+ ....+.....+|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5666666666666666554332 123444555566666666666666554
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00088 Score=53.52 Aligned_cols=186 Identities=12% Similarity=0.086 Sum_probs=132.9
Q ss_pred CCCccHHHHHHHHHHhC---C-CCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 017414 53 MDQPNEAITLFRRMQVE---N-VKPDEIA-MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127 (372)
Q Consensus 53 ~~~~~~A~~~~~~m~~~---~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 127 (372)
..+.++.++++..+... | ..++..+ |..++-+....|+.+.|...++.+...- |.+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 35677777777776542 3 4555553 4456667777888889999998888764 555555444455566778999
Q ss_pred HHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 128 KALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 128 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
+|+++|+.+.+. |.+++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999988764 3456777777777788888888888887776 567888999999999999999999999999883
Q ss_pred hcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHhhC-CCCC
Q 017414 205 RYGIEPKIEQYGCMIDLLGRAG---YLQEAEKLLRRM-PFEA 242 (372)
Q Consensus 205 ~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~-~~~~ 242 (372)
--|.++..+..+.+.+...| +..-+.+.|.+. .+.|
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 22334455566666665554 455677788776 4444
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.29 E-value=1.3e-06 Score=47.81 Aligned_cols=33 Identities=33% Similarity=0.666 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 74 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 74 (372)
+||+++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=4.7e-05 Score=57.44 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=37.7
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 219 IDLLGRAGYLQEAEKLLRRM-PFEANA----AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
...+...|++++|...|+.. ...|+. .....+...+...|++++|...++... ..+..+..+..++.+|.+.|+
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCC
Confidence 34444555555555555544 111222 122233444455555555555553321 112233344555555555555
Q ss_pred chhHHHHHH
Q 017414 294 WNESGKIRK 302 (372)
Q Consensus 294 ~~~a~~~~~ 302 (372)
+++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555555554
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=2.1e-06 Score=47.00 Aligned_cols=34 Identities=35% Similarity=0.650 Sum_probs=28.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 017414 142 ITWTTMIAGLALHGLGREALDMFSRMERARVKPN 175 (372)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 175 (372)
.+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888886
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.25 E-value=1.8e-06 Score=46.94 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC
Q 017414 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP 73 (372)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 73 (372)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 143
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.24 E-value=0.00015 Score=68.38 Aligned_cols=178 Identities=11% Similarity=-0.059 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcccCCc---chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHh
Q 017414 126 IGKALQVFENMKNKSV---ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIM 202 (372)
Q Consensus 126 ~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 202 (372)
...|+..|-+..+.|+ .+|..|...|+..-+...|.+.|++..+.+ ..+........+.|.+..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4455555544444333 356666666666666666666666665543 223445555666666666666666653222
Q ss_pred HHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 203 KSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
.++.....-...|....-.|...++..+|..-|+.. ...| |...|..+..+|...|++..|.++|.++..++|.+...
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211000001122223333455566666666666555 4444 55566666666666666666666666666666655444
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHH
Q 017414 281 YAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
-..........|.+.+|...+...
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444455566666666655544
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.24 E-value=1.7e-06 Score=58.46 Aligned_cols=76 Identities=25% Similarity=0.295 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 226 GYLQEAEKLLRRM-PFEA---NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 226 g~~~~a~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555554 1111 233333345555555555555555555 4344444444444555555555555555555
Q ss_pred H
Q 017414 302 K 302 (372)
Q Consensus 302 ~ 302 (372)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 4
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.23 E-value=4.3e-05 Score=55.38 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=55.6
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLA 252 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~ 252 (372)
+..+...+.+.|++++|...|..+.....-.+ ....+..+..++.+.|++++|.+.|+.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444555556666666666666654311111 1234445566666666666666666655 22222 334555555
Q ss_pred HHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 253 ASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
++...|+.+.|...++++.+..|+++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6666666666666666666666655443
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=3.1e-06 Score=45.95 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 017414 142 ITWTTMIAGLALHGLGREALDMFSRMERARVKP 174 (372)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 174 (372)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.20 E-value=2.9e-05 Score=53.40 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 292 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 292 (372)
+..+...+...|++++|...+++. ...| +...+..+...+...++++.|...++...+..|.++.++..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 3334 33556667777777888888888888888888777777888888888888
Q ss_pred CchhHHHHHHHHHh
Q 017414 293 RWNESGKIRKVMRD 306 (372)
Q Consensus 293 ~~~~a~~~~~~m~~ 306 (372)
+++.|...+.....
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888876643
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.8e-05 Score=63.77 Aligned_cols=257 Identities=9% Similarity=-0.016 Sum_probs=163.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (372)
.......+.+..++..|+..+....+.. +-+..-|..-+..+...++++++.--.+.-++.. +.....+.-.-.++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhh
Confidence 4445566777888889999998888864 2345556666666777777777665544444321 1112223333444444
Q ss_pred cCCHHHHHHHHHh---------------ccc-----CCcchHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 017414 123 SGKIGKALQVFEN---------------MKN-----KSVITWTTM-IAGLALHGLGREALDMFSRMERARVKPNEITFIA 181 (372)
Q Consensus 123 ~g~~~~A~~~~~~---------------~~~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 181 (372)
.++..+|.+.++. +.. |....|..+ ..++.-.|++++|.++--..++.+. .+ .+..
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n--~~al 206 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TN--AEAL 206 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-ch--hHHH
Confidence 4444444443331 111 111223222 2356678899999888777776531 12 2222
Q ss_pred HHH--HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHH-------------HHHHHHhcCCHHHHHHHHhhC-C-----C
Q 017414 182 ILS--ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGC-------------MIDLLGRAGYLQEAEKLLRRM-P-----F 240 (372)
Q Consensus 182 l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------------li~~~~~~g~~~~a~~~~~~~-~-----~ 240 (372)
.++ ++--.++.+.|...|++.+ .+.|+-..-.. -..-..+.|++.+|.+.|.+. + .
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred HhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc
Confidence 332 3335678888999998888 44555322111 122345789999999999887 3 3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 241 EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.|+...|.....+..+.|+..+|+.-.+++.+++|.-...|..-+.++...++|++|.+-+++....
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456667777778888999999999999999999877778888888999999999999988877544
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.19 E-value=0.0047 Score=58.04 Aligned_cols=215 Identities=15% Similarity=0.156 Sum_probs=141.7
Q ss_pred HHhcCCHHHHHHHHhccCC--CChhhHHHHHHH--HHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 017414 19 YAKVGDLNNARALFELMTE--KNVISWTTLIAG--YAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELG 94 (372)
Q Consensus 19 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 94 (372)
....+++.+|......+.+ |+. .|...+.+ ..+.|+.++|..+++.....+. -|..|...+-.+|...++.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence 3467889999998888776 433 33333333 4688999999988887766543 3888999999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH----HHHHHHhcccCCcchHHHHHHHHHhcCCh---------hHHH
Q 017414 95 EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK----ALQVFENMKNKSVITWTTMIAGLALHGLG---------REAL 161 (372)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~a~ 161 (372)
..+|++..+. -|+......+..+|.+.+++.+ |.++++...+.--.-|+.+--.+...... .-|.
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999999886 4557666778888888887654 56666655544444454432222222222 2355
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHhcccCchHHHHHHHH-HhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 162 DMFSRMERAR-VKPNEITFIAILSACCHVGLVELGRRYFN-IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 162 ~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+.++.+.+.+ ..-+..-...-...+...|.+++|+.++. ...+. -.+-+...-+.-++.+...+++.+..++-.++
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 5666666544 22222222233344567788999999984 44432 33334444456678888889998888877776
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.18 E-value=4.2e-05 Score=55.46 Aligned_cols=96 Identities=16% Similarity=0.023 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC---cchHHHH
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN---SGNYAIL 284 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 284 (372)
.++..++..+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677888899999999999999988 33343 3466778889999999999999999999988764 4578889
Q ss_pred HHHHHHcCCchhHHHHHHHHHhCC
Q 017414 285 SNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 285 ~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
+.++.+.|++++|.+.++++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999987763
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.13 E-value=0.00071 Score=57.33 Aligned_cols=211 Identities=12% Similarity=0.097 Sum_probs=108.5
Q ss_pred CHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 017414 24 DLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKPD-EIAMLAALSACAQLGAVELGEWIH 98 (372)
Q Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 98 (372)
++++|..+|+ .....|...|++++|.+.|.+.... +-+.+ ...|.....++.+ .++++|...+
T Consensus 30 ~~e~Aa~~y~-----------~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~ 97 (282)
T PF14938_consen 30 DYEEAADLYE-----------KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHH
T ss_pred CHHHHHHHHH-----------HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHH
Confidence 5666666643 3556666667777777776665332 11111 1223333333433 3666666666
Q ss_pred HHHHH----cCCCCc--hhHHHHHHHHHHhc-CCHHHHHHHHHhccc----CC-----cchHHHHHHHHHhcCChhHHHH
Q 017414 99 NYIEQ----YGLNTI--VPLNNALIDMYAKS-GKIGKALQVFENMKN----KS-----VITWTTMIAGLALHGLGREALD 162 (372)
Q Consensus 99 ~~~~~----~~~~~~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~ 162 (372)
++..+ .| .++ ...+..+...|... |++++|.+.|++..+ .+ ..++..+...+.+.|++++|.+
T Consensus 98 ~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 98 EKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 65553 22 222 23455566667666 777777777776542 11 1345566677777788888888
Q ss_pred HHHHHHHcCCC-----CCHH-HHHHHHHHhcccCchHHHHHHHHHhHHh-cCCCcC--HHHHHHHHHHHHh--cCCHHHH
Q 017414 163 MFSRMERARVK-----PNEI-TFIAILSACCHVGLVELGRRYFNIMKSR-YGIEPK--IEQYGCMIDLLGR--AGYLQEA 231 (372)
Q Consensus 163 ~~~~~~~~~~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~li~~~~~--~g~~~~a 231 (372)
+|++....... .+.. .+...+-.+...|+.-.|.+.+++.... .++..+ ......|+.++-. ...+.++
T Consensus 177 ~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~a 256 (282)
T PF14938_consen 177 IYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEA 256 (282)
T ss_dssp HHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHH
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88777654221 1111 2222233445567777777777776632 122222 2444556666643 3456677
Q ss_pred HHHHhhCCCCCCHHHHH
Q 017414 232 EKLLRRMPFEANAAIWG 248 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ 248 (372)
..-|+.+. +.|..--.
T Consensus 257 v~~~d~~~-~ld~w~~~ 272 (282)
T PF14938_consen 257 VAEYDSIS-RLDNWKTK 272 (282)
T ss_dssp CHHHTTSS----HHHHH
T ss_pred HHHHcccC-ccHHHHHH
Confidence 77777763 33444333
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.07 E-value=0.00011 Score=64.22 Aligned_cols=104 Identities=13% Similarity=0.015 Sum_probs=71.6
Q ss_pred HHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 017414 184 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVE 261 (372)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 261 (372)
..+...|+++.|...|+++.+ .-+.+...|..+..+|...|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344556777777777777774 22334566677777777778888887777776 4444 4556777777777888888
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 262 LGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 262 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
+|...|+++++++|.++.+...+..+..
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8888888888888877766655544433
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.06 E-value=1.9e-05 Score=51.03 Aligned_cols=64 Identities=27% Similarity=0.277 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC-CchhHHHHHHHHHh
Q 017414 243 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG-RWNESGKIRKVMRD 306 (372)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 306 (372)
++.+|..+...+...|++++|+..|+++++.+|.++.+|..++.++...| ++++|.+.+++...
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888889999999999999999999999999999999999999999 79999998887654
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.05 E-value=0.0056 Score=57.57 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=150.6
Q ss_pred HhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 017414 51 AQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA--CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK 128 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 128 (372)
...+++.+|++...++.+. .|+.. |..++.+ +.+.|..++|..+++.....+. .|..+...+-.+|.+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 4567899999999998875 35544 2333443 5688999999988888776653 378888999999999999999
Q ss_pred HHHHHHhcccC--CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC----------chHHHH
Q 017414 129 ALQVFENMKNK--SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG----------LVELGR 196 (372)
Q Consensus 129 A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----------~~~~a~ 196 (372)
|..+|++..+. +......+..+|.+.+.+.+-.+.--++-+. .+-....|-.+++.....- -..-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99999999864 4445556677888888776544443333332 3334555556665554321 134566
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHh-hC-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR-RM-PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
+.++.+.++.|---+..-.......+...|++++|.+++. .. ...+ +...-+.-+..+...+++.+..++..++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 7777777653311122222233445567889999999983 33 2222 333444566678888999999999999999
Q ss_pred hCCCC
Q 017414 273 LEPHN 277 (372)
Q Consensus 273 ~~p~~ 277 (372)
.++++
T Consensus 255 k~~Dd 259 (932)
T KOG2053|consen 255 KGNDD 259 (932)
T ss_pred hCCcc
Confidence 99877
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.04 E-value=0.00028 Score=59.62 Aligned_cols=134 Identities=15% Similarity=0.197 Sum_probs=98.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 142 ITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
.+|-.++....+.+..+.|..+|.+.++.+ .........+++.. ...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367778888888888999999999988543 22333333444433 3356788899999999974 4567788888999
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 221 LLGRAGYLQEAEKLLRRM-PFEANA----AIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
.+...|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+.+..+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 323333 4899999999999999999999999999887644
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.04 E-value=4.9e-05 Score=66.49 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=80.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCch
Q 017414 218 MIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 295 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 295 (372)
-...+...|++++|+++|++. ...| +...|..+..++...|++++|+..++++++++|.++..|..++.+|...|+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 355667889999999999998 4455 56778888889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhC
Q 017414 296 ESGKIRKVMRDM 307 (372)
Q Consensus 296 ~a~~~~~~m~~~ 307 (372)
+|...|++....
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.03 E-value=7.9e-05 Score=51.12 Aligned_cols=92 Identities=18% Similarity=0.104 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (372)
+..+...+...|++++|+..+++..+.. +.+...+..+..++...++++.|...++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3344445555555555555555554432 2222344444455555555555555555555443 2233344444555555
Q ss_pred cCCHHHHHHHHHhc
Q 017414 123 SGKIGKALQVFENM 136 (372)
Q Consensus 123 ~g~~~~A~~~~~~~ 136 (372)
.|++++|...+.+.
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 55555555554443
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.03 E-value=0.0002 Score=55.82 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=69.6
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD--EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL 116 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (372)
....+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445678888888899999999999998887533222 3567788888899999999999999888764 3456666777
Q ss_pred HHHHHhcCCHHHHHHH
Q 017414 117 IDMYAKSGKIGKALQV 132 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~ 132 (372)
..+|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7788777775554433
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.99 E-value=0.00015 Score=56.51 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 286 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 286 (372)
...+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566666777777777777777766 22222 3467777778888888888888888888888887777878888
Q ss_pred HHHHcCC
Q 017414 287 IYAILGR 293 (372)
Q Consensus 287 ~~~~~g~ 293 (372)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877666
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=2.9e-05 Score=63.32 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=87.1
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChh
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVE 261 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~ 261 (372)
-..+.+++.+|...|.+++ .+.| |...|..-..+|++.|.++.|++-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 4567899999999999999 4454 5666777789999999999999877766 66664 568999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCch
Q 017414 262 LGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 295 (372)
Q Consensus 262 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 295 (372)
+|++.|+++++++|++......|-.+-.+.+..+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998865566655555555554
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.96 E-value=0.00025 Score=52.84 Aligned_cols=94 Identities=9% Similarity=-0.002 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDM 119 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (372)
......+...+...|++++|..+|+.+.... +-+..-|..|..++...|++++|+..|....... +.++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344444555555666666666666555532 2234444555555556666666666666655554 3344445555556
Q ss_pred HHhcCCHHHHHHHHHh
Q 017414 120 YAKSGKIGKALQVFEN 135 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~ 135 (372)
+...|+.+.|.+.|+.
T Consensus 113 ~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 113 YLACDNVCYAIKALKA 128 (157)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 6666666666555554
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=4.2e-05 Score=51.61 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=39.4
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHH
Q 017414 154 HGLGREALDMFSRMERARVK-PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a 231 (372)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...+ +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35566666666666654321 1233333355566666666666666655 2 1112 223333445556666666666
Q ss_pred HHHHhh
Q 017414 232 EKLLRR 237 (372)
Q Consensus 232 ~~~~~~ 237 (372)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
No 163
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.94 E-value=0.00049 Score=49.44 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=64.4
Q ss_pred HHHHHHhCCCccHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHH
Q 017414 46 LIAGYAQMDQPNEAITLFRRMQVENVKPD--EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNT---IVPLNNALIDMY 120 (372)
Q Consensus 46 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 120 (372)
+..++-..|+.++|+.+|++....|+... ...+..+.+++...|++++|..+++...... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 45556677888888888888887775543 2355567777778888888888888777652 21 223333344566
Q ss_pred HhcCCHHHHHHHHHhcccCCcchHHHHHH
Q 017414 121 AKSGKIGKALQVFENMKNKSVITWTTMIA 149 (372)
Q Consensus 121 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 149 (372)
...|+.++|.+.+-...-++...|.--|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777765544333333333333
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=97.93 E-value=0.00016 Score=54.15 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
.....-+...|++++|..+|+-+ -.. -+..-|..|..++...++++.|...|..+..+.++||.++...+.+|...|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34455566899999999999988 222 3566788888899999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHh
Q 017414 294 WNESGKIRKVMRD 306 (372)
Q Consensus 294 ~~~a~~~~~~m~~ 306 (372)
.+.|...|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.93 E-value=0.00043 Score=53.73 Aligned_cols=81 Identities=6% Similarity=-0.094 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP--DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 117 (372)
...|..++..+...|++++|+..|++.......| ...++..+..++...|+.++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4567777888888888888888888887653222 23467778888888888888888888887653 33345555566
Q ss_pred HHHH
Q 017414 118 DMYA 121 (372)
Q Consensus 118 ~~~~ 121 (372)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 6665
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.92 E-value=3.4e-05 Score=49.08 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=39.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+...+...|++++|...|+.+.+..|.++..+..++.++...|++++|...|++..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677777777777777777777777777777777777777777777776644
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.92 E-value=0.00021 Score=55.52 Aligned_cols=94 Identities=11% Similarity=-0.076 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 285 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 285 (372)
....|..++..+...|++++|...|++. ...|+ ..++..+...+...|++++|...++++.++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777888889999999988887 33332 347788888999999999999999999999888888888888
Q ss_pred HHHH-------HcCCchhHHHHHHHH
Q 017414 286 NIYA-------ILGRWNESGKIRKVM 304 (372)
Q Consensus 286 ~~~~-------~~g~~~~a~~~~~~m 304 (372)
..+. ..|+++.|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8887 888888777666654
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.91 E-value=0.00096 Score=61.18 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
..|..+.-.....|++++|...++++.+++| +...|..++..+...|+.++|.+.+++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444555555555555555555 3445555555555555555555555544
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.91 E-value=1.4e-05 Score=42.17 Aligned_cols=29 Identities=34% Similarity=0.685 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCC
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVEN 70 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 70 (372)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 170
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.89 E-value=1.9e-05 Score=41.66 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERAR 171 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 171 (372)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.88 E-value=0.0047 Score=47.11 Aligned_cols=133 Identities=12% Similarity=0.055 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC---CHHHH
Q 017414 172 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA---NAAIW 247 (372)
Q Consensus 172 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~---~~~~~ 247 (372)
..|+...-..|..+..+.|+..+|...|++.... -+.-|......+.++....+++..|...++.+ ...| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3577777777888899999999999999998852 34556777778888888899999999998887 2222 33445
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..+.+.+...|.+..|+..|+.+....| ++.........+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6677888899999999999999999877 555666677788889988877765554433
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.88 E-value=6.6e-05 Score=47.77 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 218 MIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
+...+...|++++|...|+++ ...| +...+..+..++...|++++|...++++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456777888888888888887 4455 556677777888888888888888888888888764
No 173
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.87 E-value=0.00032 Score=48.62 Aligned_cols=81 Identities=12% Similarity=0.010 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCC--------hHHHHHHHHHHHHcCCCCchhH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPDEIAMLAALSACAQLGA--------VELGEWIHNYIEQYGLNTIVPL 112 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~ 112 (372)
+....|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..- .-....+|+.+...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566667778999999999999999999 8999999999988776542 3456778999999999999999
Q ss_pred HHHHHHHHHh
Q 017414 113 NNALIDMYAK 122 (372)
Q Consensus 113 ~~~l~~~~~~ 122 (372)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.84 E-value=0.0056 Score=50.45 Aligned_cols=184 Identities=10% Similarity=-0.009 Sum_probs=106.3
Q ss_pred CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH-H---HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHH
Q 017414 38 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI-A---MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN 113 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 113 (372)
.+...+-.....+...|++++|++.|+++.... |+.. . ...++.++.+.++++.|...+++..+........-+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 355555556666788999999999999998853 4332 2 235668889999999999999999986422222222
Q ss_pred HHHHHHHH--hcC---------------CH---HHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 017414 114 NALIDMYA--KSG---------------KI---GKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173 (372)
Q Consensus 114 ~~l~~~~~--~~g---------------~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (372)
...+.+.+ ..+ +. .+|+..|+++.+ -|=.+.-..+|...+..+...
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~-----------~yP~S~ya~~A~~rl~~l~~~--- 173 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR-----------GYPNSQYTTDATKRLVFLKDR--- 173 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH-----------HCcCChhHHHHHHHHHHHHHH---
Confidence 22233222 111 22 345555555543 222233344444444433321
Q ss_pred CCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 174 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 174 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
.-...+ .+.+.|.+.|.+..|..-++.+.+++.-.| .......++.+|...|..++|.+....+
T Consensus 174 la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 011111 355567777777777777777776543322 2345556667777777777777665443
No 175
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.83 E-value=0.0002 Score=63.01 Aligned_cols=116 Identities=9% Similarity=0.029 Sum_probs=84.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC-C-----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE-K-----NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
+......+++.+....+++.+..++.+.+. | -..+..++++.|.+.|..++++.++..=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444455566667777777778887777664 2 1235568888888888888888888887788888888888888
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (372)
+..+.+.|++..|.++...|...+.-.+..++..-+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887776666666665555555544
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00025 Score=58.08 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=87.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcC
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAG 226 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 226 (372)
..-+.+.++|.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+... .+.|. ..+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 445778999999999999999873 4467777788899999999999999888887 44554 578999999999999
Q ss_pred CHHHHHHHHhhC-CCCCCHHHHHHHHH-HHHHcCChh
Q 017414 227 YLQEAEKLLRRM-PFEANAAIWGSLLA-ASNIYGDVE 261 (372)
Q Consensus 227 ~~~~a~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~ 261 (372)
++++|.+.|++. .+.|+-.+|..=+. +-.+.+...
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999997 88887777665554 333444443
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.82 E-value=0.00025 Score=60.52 Aligned_cols=256 Identities=11% Similarity=0.016 Sum_probs=152.4
Q ss_pred HHHhCCCccHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHH--H--cCCC-CchhHHHHHHHH
Q 017414 49 GYAQMDQPNEAITLFRRMQVENVKPDE----IAMLAALSACAQLGAVELGEWIHNYIE--Q--YGLN-TIVPLNNALIDM 119 (372)
Q Consensus 49 ~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~~ 119 (372)
-+++.|+....+.+|+..++.| .-|. ..|..|.++|.-.+++++|.++...=+ . .|-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4677888888888888888766 2333 345666677777778888877653211 1 1100 011222335555
Q ss_pred HHhcCCHHHHHHHHHhcc----c-----CCcchHHHHHHHHHhcCC--------------------hhHHHHHHHHHHH-
Q 017414 120 YAKSGKIGKALQVFENMK----N-----KSVITWTTMIAGLALHGL--------------------GREALDMFSRMER- 169 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~----~-----~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~- 169 (372)
+--.|.+++|.-+-.+-. + ....++..+...|...|+ ++.|.++|.+=++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 666677777765433221 1 022345555666654442 1223333332111
Q ss_pred ---cCCC-CCHHHHHHHHHHhcccCchHHHHHHHHH---hHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhhC---
Q 017414 170 ---ARVK-PNEITFIAILSACCHVGLVELGRRYFNI---MKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM--- 238 (372)
Q Consensus 170 ---~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~--- 238 (372)
.|-. .-...|..|...|.-.|+++.|+...+. +.+++|-... ...+..+..++.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 1123556666666677888888766543 2223343332 356777888888899999998888764
Q ss_pred ----C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----hC--CCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 239 ----P-FEANAAIWGSLLAASNIYGDVELGECALQHLIK----LE--PHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 239 ----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+ .........+|.+.|.-..+++.|+.++.+-+. ++ .....++..|+.+|...|..++|+...+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 223455677788888888888999888776554 22 2245688889999999999998887666543
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.001 Score=54.83 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=87.2
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHhCCCCcchHHH
Q 017414 209 EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIY---GDVELGECALQHLIKLEPHNSGNYAI 283 (372)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 283 (372)
+-|...|..|...|...|+++.|..-|.+. .+. ++...+..+..++... ....++..+++++.+.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 557899999999999999999999999987 333 3566666776655433 34578999999999999999999999
Q ss_pred HHHHHHHcCCchhHHHHHHHHHhCCCccCC
Q 017414 284 LSNIYAILGRWNESGKIRKVMRDMGVKKMP 313 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 313 (372)
|...+...|++.+|...|+.|.+..-...|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999886554333
No 179
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.80 E-value=0.00046 Score=47.87 Aligned_cols=80 Identities=11% Similarity=0.087 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcccC--------chHHHHHHHHHhHHhcCCCcCHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERARV-KPNEITFIAILSACCHVG--------LVELGRRYFNIMKSRYGIEPKIEQ 214 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 214 (372)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|... +++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666667999999999999999998 889999999988876542 244567888888865 89999999
Q ss_pred HHHHHHHHHh
Q 017414 215 YGCMIDLLGR 224 (372)
Q Consensus 215 ~~~li~~~~~ 224 (372)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 180
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.79 E-value=0.019 Score=49.20 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=57.7
Q ss_pred HHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcC
Q 017414 184 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLLAASNIYG 258 (372)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~l~~~~~~~~ 258 (372)
.++.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+. +.+-+++. ..+| +...-..+..+....|
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 4455556666666666665532 344433222 222233332 11111111 2233 3444555555666667
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH-cCCchhHHHHHHHHH
Q 017414 259 DVELGECALQHLIKLEPHNSGNYAILSNIYAI-LGRWNESGKIRKVMR 305 (372)
Q Consensus 259 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~ 305 (372)
++..|..--+.+....|. ...|..|.+.-.. .|+-.++...+.+-.
T Consensus 344 e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 344 EFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred chHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 776666666666666663 3466666665543 377777777665543
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.79 E-value=0.0072 Score=46.14 Aligned_cols=99 Identities=15% Similarity=-0.026 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CcchHHH
Q 017414 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----SVITWTT 146 (372)
Q Consensus 72 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ 146 (372)
-|+...-..|..+....|+..+|...|++....-+..|..+...+..+....++...|...++++.+- ++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444455555555555555555555554434444555555555555555555555555554321 2233444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 017414 147 MIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
+...+...|++.+|..-|+.....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 445555555555555555555443
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.76 E-value=5.1e-05 Score=48.80 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=39.5
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
...|++++|+..++++.+..|.++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567788888888888888888887888888888888888888888776543
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.75 E-value=0.022 Score=48.88 Aligned_cols=110 Identities=12% Similarity=0.101 Sum_probs=82.1
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY 257 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (372)
+.+..+.-+...|+...|.++-.+. + -|+..-|-..+.+|+..+++++-.++... +.++.-|..++.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4445566667778877777665544 3 37888888999999999999988877654 23456788899999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 258 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
|+..+|..+..+ ..+..-+..|.+.|+|.+|.+.--+.
T Consensus 251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999988888776 12356778889999999998765544
No 184
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.74 E-value=0.0094 Score=53.06 Aligned_cols=148 Identities=10% Similarity=0.041 Sum_probs=84.6
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHH
Q 017414 56 PNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNT-IVPLNNALIDMYAKSGKIGKALQVFE 134 (372)
Q Consensus 56 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 134 (372)
.+.....+++++..-..--+.+|..+++...+..-++.|..+|.++.+.+..+ .+.+.++++..|+. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44555555555543211122345566666666666667777777776665555 45555666665553 55666666666
Q ss_pred hccc--CCcc-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 135 NMKN--KSVI-TWTTMIAGLALHGLGREALDMFSRMERARVKPN--EITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 135 ~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
--.+ +|.. --...+.-+...++-..+..+|++....++.|+ ...|..++..-+.-|++..+.++-++...
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4332 2322 234455555666666666666666666544443 24666666666666666666666665554
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0041 Score=52.74 Aligned_cols=167 Identities=13% Similarity=0.100 Sum_probs=72.7
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHH
Q 017414 55 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY----GLNT-IVPLNNALIDMYAKSGKIGKA 129 (372)
Q Consensus 55 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A 129 (372)
++++|..+|.+.- +.|...+++++|...|.+.... +-+. -...|.....+|.+. ++++|
T Consensus 30 ~~e~Aa~~y~~Aa---------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~A 93 (282)
T PF14938_consen 30 DYEEAADLYEKAA---------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEA 93 (282)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHH
T ss_pred CHHHHHHHHHHHH---------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHH
Confidence 5666766666552 3444455555555555544321 1000 112233333333333 55555
Q ss_pred HHHHHhccc-------CC--cchHHHHHHHHHhc-CChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHhcccCchH
Q 017414 130 LQVFENMKN-------KS--VITWTTMIAGLALH-GLGREALDMFSRMERA----RVKPN--EITFIAILSACCHVGLVE 193 (372)
Q Consensus 130 ~~~~~~~~~-------~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~ 193 (372)
...+++..+ ++ ...+..+...|... |++++|++.|++..+. + .+. ..++..+...+.+.|+++
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHH
Confidence 555544321 00 11233344555555 5666666666655432 1 111 223444555566666666
Q ss_pred HHHHHHHHhHHhcC----CCcCH-HHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 194 LGRRYFNIMKSRYG----IEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 194 ~a~~~~~~~~~~~~----~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+|.++|+++....- ...+. ..+...+-++...|+...|...+++.
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666553210 01111 11222333444556666666666554
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.74 E-value=0.00078 Score=56.91 Aligned_cols=127 Identities=14% Similarity=0.075 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA-CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 120 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (372)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666665432 2233334333333 23345555566666666655 355556666666666
Q ss_pred HhcCCHHHHHHHHHhcccC------CcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 121 AKSGKIGKALQVFENMKNK------SVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 121 ~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
...|+.+.|..+|++.... ....|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665532 1235555666556666666666666665553
No 187
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.73 E-value=0.0072 Score=52.34 Aligned_cols=163 Identities=18% Similarity=0.089 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccC-------CcchHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKNK-------SVITWTTMIAGLAL---HGLGREALDMFSRMERARVKPNEITFI 180 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~ 180 (372)
.+...++-+|....+++...++++.+... ....-....-++.+ .|+.++|++++..+......++..++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34445666788888999999999988764 22233345556667 888999999988866665667777887
Q ss_pred HHHHHhcc---------cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH----HHHHHHH---hh-C-----
Q 017414 181 AILSACCH---------VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL----QEAEKLL---RR-M----- 238 (372)
Q Consensus 181 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~---~~-~----- 238 (372)
.+...|-. ....++|...|.+.- .+.|+..+--.++..+...|.. .+..++- .. +
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 77665532 223566776666554 3344432222222223233321 1222222 11 1
Q ss_pred -CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 239 -PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 239 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
.-..+-..+..++.++.-.|+.++|.+.++++.++.|+
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 12245556667777777778888888888887777654
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.71 E-value=0.019 Score=47.30 Aligned_cols=177 Identities=12% Similarity=0.025 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHH---HHHHHHHHhcCCHHHHHHHHHhcccCCc----chHHH
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN---NALIDMYAKSGKIGKALQVFENMKNKSV----ITWTT 146 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~ 146 (372)
+...+-.....+...|++++|...|+.+.... |-+.... -.++.+|.+.+++++|...|++..+..+ ..|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34444445556677899999999999999864 2223222 4577899999999999999999875322 23333
Q ss_pred HHHHHHh--cC---------------C---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhc
Q 017414 147 MIAGLAL--HG---------------L---GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY 206 (372)
Q Consensus 147 l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 206 (372)
.+.+.+. .+ + ..+|++.|++++ .-|=.+.-..+|...+..+..+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH-
Confidence 3333321 11 1 123444444444 4444444456666555555432
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 017414 207 GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLLAASNIYGDVELGECALQHLI 271 (372)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (372)
=...-..+.+-|.+.|.+..|..-++.+ +..| .......++.+|...|..++|......+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111225678899999998888877776 3333 44567778889999999999988876654
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.70 E-value=0.00077 Score=59.43 Aligned_cols=93 Identities=10% Similarity=0.122 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC------CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017414 112 LNNALIDMYAKSGKIGKALQVFENMKNK------SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 185 (372)
Q Consensus 112 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 185 (372)
....+++.+....+++.+..++.+.... -..+..+++..|...|..++++.+++.=...|+-||..+++.|++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3333444444444444444444444321 1123345555555555555555555555555555555555555555
Q ss_pred hcccCchHHHHHHHHHhHH
Q 017414 186 CCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~ 204 (372)
+.+.|++..|.++...|..
T Consensus 148 fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMML 166 (429)
T ss_pred HhhcccHHHHHHHHHHHHH
Confidence 5555555555555555443
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.69 E-value=0.00017 Score=47.01 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=46.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
..+...++++.|.++++.+...+|.++..+...+.++...|++++|.+.++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888888888888888888888888888877644
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.69 E-value=0.00078 Score=52.78 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=76.6
Q ss_pred HHHHHhcc--CCCChhhHHHHHHHHHhC-----CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-----------
Q 017414 28 ARALFELM--TEKNVISWTTLIAGYAQM-----DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG----------- 89 (372)
Q Consensus 28 A~~~~~~~--~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 89 (372)
-...|+.. ...+..+|..++..|.+. |..+-....+..|.+.|+.-|..+|+.|+..+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 446788888888888754 667777778889999999999999999999875432
Q ss_pred -----ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 90 -----AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 90 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
+-+-|+.++++|...|+-||..++..|++.+++.+
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 34678889999999999999999999999886654
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.65 E-value=0.0042 Score=57.09 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH
Q 017414 175 NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIW 247 (372)
Q Consensus 175 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~ 247 (372)
+...|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++. .+.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 445565555555556788888888887773 3467777777777888888888888877775 445554443
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.60 E-value=0.0002 Score=46.13 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhCC
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG-DVELGECALQHLIKLEP 275 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 275 (372)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4556777777788888888888888776 3344 4556777777788887 68888888888887776
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.58 E-value=0.0038 Score=44.89 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=59.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHH
Q 017414 146 TMIAGLALHGLGREALDMFSRMERARVKPN--EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLL 222 (372)
Q Consensus 146 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~ 222 (372)
.+..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..+++.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345666777888888888888877765544 23455566777778888888888887775421100 222333344566
Q ss_pred HhcCCHHHHHHHHhhC
Q 017414 223 GRAGYLQEAEKLLRRM 238 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~ 238 (372)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 6778888877766543
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.00052 Score=43.98 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=28.4
Q ss_pred cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH
Q 017414 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIW 247 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~ 247 (372)
.|++++|..+|+.+... .+-+...+..++.+|.+.|++++|.++++++ ...|+...|
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 45555555555555532 1224444555555555555555555555555 334443333
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.50 E-value=0.0017 Score=54.04 Aligned_cols=82 Identities=9% Similarity=-0.024 Sum_probs=37.9
Q ss_pred HhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc---chHHHHHHHHHHcCCc
Q 017414 223 GRAGYLQEAEKLLRRM-PFEANA----AIWGSLLAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRW 294 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~ 294 (372)
.+.|++++|...|+.+ ...|+. ..+..+..+|...|++++|...|+.+.+..|+++ .++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555555444 222221 2334444455555555555555555555444432 2333334445555555
Q ss_pred hhHHHHHHHH
Q 017414 295 NESGKIRKVM 304 (372)
Q Consensus 295 ~~a~~~~~~m 304 (372)
++|..+|++.
T Consensus 234 ~~A~~~~~~v 243 (263)
T PRK10803 234 AKAKAVYQQV 243 (263)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.48 E-value=0.0023 Score=50.26 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=65.0
Q ss_pred cCCcchHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc----------------CchHHHH
Q 017414 138 NKSVITWTTMIAGLAL-----HGLGREALDMFSRMERARVKPNEITFIAILSACCHV----------------GLVELGR 196 (372)
Q Consensus 138 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~ 196 (372)
..+..+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4555666666666653 466777788888899999999999999999887552 2346677
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 227 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 227 (372)
+++++|.. +|+-||..++..+++.+.+.+.
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 78888874 4888888888887777766553
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.48 E-value=0.035 Score=44.47 Aligned_cols=171 Identities=16% Similarity=0.044 Sum_probs=73.2
Q ss_pred HHHHHHhCCCccHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH--
Q 017414 46 LIAGYAQMDQPNEAITLFRRMQVENV--KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA-- 121 (372)
Q Consensus 46 l~~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 121 (372)
....+...|++.+|++.|+++..... +--......++.++.+.|+++.|...++..++.-......-+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34445566666666666666655311 11122344455566666666666666666655421111111111111111
Q ss_pred hc-----------CCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC
Q 017414 122 KS-----------GKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190 (372)
Q Consensus 122 ~~-----------g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 190 (372)
.. +...+|... +..++.-|=.+....+|...+..+... =...-..+...|.+.|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~-----------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEE-----------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHH-----------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT
T ss_pred HhCccchhcccChHHHHHHHHH-----------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcc
Confidence 10 011122222 233334444444444454444443321 0011112455566777
Q ss_pred chHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcCCHHHH
Q 017414 191 LVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 191 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a 231 (372)
.+..|..-++.+.+++.-.+. ......++.+|.+.|..+.+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777777777654322221 13345556666666666533
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.014 Score=47.25 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=78.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhH-----HHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPL-----NNALI 117 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~ 117 (372)
-+.++..+.-.|.+.-...++.+..+...+.++.....|.+...+.||.+.|..+|+...+..-..+..+ .....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4555666666677777777777777765455666666777777777777777777776664322333222 22333
Q ss_pred HHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 118 DMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
..|.-.+++..|...|.++... |+..-|.-.-+..-.|+..+|++.++.|+..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455566777777777666543 3344444444455567777777777777765
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.42 E-value=0.0057 Score=49.03 Aligned_cols=172 Identities=15% Similarity=0.094 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--KN----VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
+....-.....+.+.|++.+|...|+.+.. |+ ..+.-.++.++.+.|+++.|...+++..+.-.......+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 444444567778899999999999999985 43 245667888999999999999999998875211111222222
Q ss_pred HHHHHcc-------------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHH
Q 017414 82 LSACAQL-------------GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMI 148 (372)
Q Consensus 82 ~~~~~~~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 148 (372)
+.+.+.. +....|...|+.+++. |=.+.-..+|...+..+...=...--.+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~---------------yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR---------------YPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----------------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH---------------CcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 1223445555555544 33333344444444333221111222356
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhcccCchHHHH
Q 017414 149 AGLALHGLGREALDMFSRMERARVKPN----EITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~ 196 (372)
..|.+.|.+..|..-++.+.+. -|+ ......++.+|.+.|..+.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 6788889999999999888876 233 235567778888888777443
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.35 E-value=0.00095 Score=50.42 Aligned_cols=68 Identities=26% Similarity=0.351 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH-----hCCCccCC
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR-----DMGVKKMP 313 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 313 (372)
....++..+...|+++.|...++.+...+|.+...|..++.+|...|+...|.+.|+++. +.|+.|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 345566777889999999999999999999999999999999999999999999999884 45776644
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.32 E-value=0.044 Score=50.12 Aligned_cols=239 Identities=14% Similarity=0.129 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC-C----------CChhhHHHHHHHHHhCCC--ccHHHHHHHHHHhCCCCCCHHH
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMT-E----------KNVISWTTLIAGYAQMDQ--PNEAITLFRRMQVENVKPDEIA 77 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~-~----------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~ 77 (372)
.+.+=+.-|...|.+++|.++----. . .+...++..=.+|.+-.+ +-+.+.-++++++.|-.|+...
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL 637 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH
Confidence 34455566778888888866521100 0 122334444455555443 3344555566777777777653
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--------------CCcch
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--------------KSVIT 143 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~~ 143 (372)
+...|+-.|.+.+|.++|.+ .|.+ +--+.+|...+.+|.|.++...-.. .++.-
T Consensus 638 ---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke 705 (1081)
T KOG1538|consen 638 ---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKE 705 (1081)
T ss_pred ---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCC
Confidence 34556777888888887753 3422 2345555555556666665543221 12222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH------HHHcCC---CCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSR------MERARV---KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ 214 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 214 (372)
-.+....+...|+.++|..+.-+ +.+.+- ..+..+...+...+-+...+..|-++|..|-+.
T Consensus 706 PkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 706 PKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred cHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 22344555667777777665321 111111 123345555555556667777788888777632
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHHH-----------HHHHHHHHHHcCChhHHHHHHHHHH
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRMP-FEANAAI-----------WGSLLAASNIYGDVELGECALQHLI 271 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (372)
..+++.....+++++|..+.++.| ..||+.. |...-.+|.+.|+-.+|.++++++.
T Consensus 777 -ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 777 -KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred -HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 346777888888888888888873 3344321 1112234455555555555555543
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.32 E-value=0.046 Score=50.42 Aligned_cols=128 Identities=16% Similarity=0.033 Sum_probs=75.1
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHHccCChHHH
Q 017414 25 LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAAL----------SACAQLGAVELG 94 (372)
Q Consensus 25 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~----------~~~~~~~~~~~a 94 (372)
+++|.+..+. .|.+..|..|.......-.++.|...|-+...- |.......|- ..-+--|.+++|
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHh
Confidence 4444444433 356677888887777777777777777655431 2211111111 111224677777
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--C---cchHHHHHHHHHhcCChhHHHHHHHH
Q 017414 95 EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--S---VITWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
+++|-.+-+.. .-+..+.+.|+|-...++++.--.. | ..+|+.+...+.....|++|.+.|..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776655442 3466677778887777777653321 1 24677777777777777777777654
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.31 E-value=0.01 Score=49.43 Aligned_cols=102 Identities=13% Similarity=0.022 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC----CHHHHHHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA----NAAIWGSL 250 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~----~~~~~~~l 250 (372)
..|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ ...| ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4555555555667899999999999986532111 1356778889999999999999999888 2223 24455556
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 251 LAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
...+...|+.+.|...++.+.+..|.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6778889999999999999999999765
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.27 E-value=0.0015 Score=42.54 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=46.8
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 220 DLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
..|.+.+++++|.++++++ ...| +...|.....++...|++++|.+.++.+.+..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888888888888887 4445 455666677788888888888888888888888665443
No 206
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.27 E-value=0.00031 Score=37.77 Aligned_cols=32 Identities=31% Similarity=0.560 Sum_probs=30.1
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCchhHH
Q 017414 267 LQHLIKLEPHNSGNYAILSNIYAILGRWNESG 298 (372)
Q Consensus 267 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 298 (372)
++++++++|+++.+|..|+..|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.12 Score=48.21 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 017414 176 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASN 255 (372)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 255 (372)
..+.+--+.-+...|+-.+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+... ++.-|.-+..+|.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACL 755 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHH
Confidence 3344445555667788888888777766 4788888888899999999999888887763 2345777889999
Q ss_pred HcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 256 IYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
+.|+.++|.+++-+...+ .....+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 999999998876554221 1577889999999998886543
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.23 E-value=0.00079 Score=38.77 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHH
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 286 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 286 (372)
.++..+..+|...|++++|+++++++.+..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999988887754
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.028 Score=45.51 Aligned_cols=131 Identities=9% Similarity=0.050 Sum_probs=96.8
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--------CCCCCHHHHHH
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--------PFEANAAIWGS 249 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~~ 249 (372)
..+.++..+...|.+.-....++++.++ .-+.++.....|++.-.+.|+.+.|...|++. +.+-+..+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3445666666777888888888888864 44556777778888888889998888888854 22222233333
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
....+...+++..|...+.++...+|.++...+.-.-+....|+...|.+.++.|.....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 344566778888888899999998888888888878888888999999999998876543
No 210
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.16 E-value=0.15 Score=44.79 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=87.9
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH-HHHHHHH
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYG-IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIW-GSLLAAS 254 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~-~~l~~~~ 254 (372)
.|...+.+..+..-++.|..+|.++.+. + +.+++..+++++..++ .|+..-|..+|+-- ..-||...| ...+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455666666667788889999998865 5 6778888888888775 45777888888765 334555444 4566667
Q ss_pred HHcCChhHHHHHHHHHHHhCC--CCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 255 NIYGDVELGECALQHLIKLEP--HNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
...++-+.|..+|+...+.-. .-...|..++.--..-|+...+..+-+.|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 778888888888886655221 124578888877778888877776666654
No 211
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.034 Score=46.08 Aligned_cols=110 Identities=18% Similarity=0.084 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc-C--CHHHHHHHHhhC-CCCC-CHHHH
Q 017414 173 KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA-G--YLQEAEKLLRRM-PFEA-NAAIW 247 (372)
Q Consensus 173 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g--~~~~a~~~~~~~-~~~~-~~~~~ 247 (372)
+-|...|..|..+|...|+++.|..-|....+ -.++++..+..+..++... | ...++.++|+++ ...| |....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45778888899999999999999999988884 3345566677777666543 2 356788888887 5555 45556
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 017414 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 285 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 285 (372)
..|...+...|++.+|...++.|.+..|.+. .+..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHH
Confidence 6666788899999999999999999877654 444444
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.13 E-value=0.0031 Score=55.39 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA----AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 285 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 285 (372)
+...++.+..+|...|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4566677777777777777777777764 555653 24677777777777777777777777775321 221111
Q ss_pred H--HHHHcCCchhHHHHHHHHHhCCCc
Q 017414 286 N--IYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 286 ~--~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
. .+....+.++..++++.....|.+
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112223334556666666666654
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.11 E-value=0.008 Score=43.68 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 017414 171 RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 221 (372)
Q Consensus 171 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 221 (372)
...|+..+..+++.+|+..|++..|.++.+...+.++++.+...|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356777777788888887888888888888887777777777777777653
No 214
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.21 Score=46.35 Aligned_cols=202 Identities=13% Similarity=0.039 Sum_probs=120.2
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-CChhhHHHHHHH----------HHhCCCccHHHHHHHHHHhCCCCC
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE-KNVISWTTLIAG----------YAQMDQPNEAITLFRRMQVENVKP 73 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~----------~~~~~~~~~A~~~~~~m~~~~~~p 73 (372)
+.|.+..|..+.......-.++-|+..|-++.. +.+..-.-|-.. -+--|++++|.++|-.|-+..
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 468889999999999999999999999988775 333221111111 122488999999988776543
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHH
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI----VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIA 149 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 149 (372)
..+....+.|++-.+.++++ ..|-..+ ...++.+.+.+.....|++|.+.|..-.. -...+.
T Consensus 765 ------LAielr~klgDwfrV~qL~r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~e 830 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIR---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIE 830 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHH---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHH
Confidence 23455566777766555443 2221222 35677778888888888888887765321 122445
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 017414 150 GLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 229 (372)
++.+..++++-+.+-..+ +-+....-.+..++.+.|.-++|.+.|-+.. .|. .-+..|...+++.
T Consensus 831 cly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHHHHHHH
Confidence 555555555544443332 2333445556666677777777666554332 121 2344555666666
Q ss_pred HHHHHHhhC
Q 017414 230 EAEKLLRRM 238 (372)
Q Consensus 230 ~a~~~~~~~ 238 (372)
+|.++.++.
T Consensus 896 ~avelaq~~ 904 (1189)
T KOG2041|consen 896 EAVELAQRF 904 (1189)
T ss_pred HHHHHHHhc
Confidence 666666655
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.08 E-value=0.00098 Score=44.07 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVE----NV-KPD-EIAMLAALSACAQLGAVELGEWIHNYIE 102 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (372)
|+.+...|...|++++|+..|++..+. |. .|+ ..++..+..++...|++++|.+.+++..
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444321 10 011 2334444455555555555555554443
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.05 E-value=0.02 Score=49.40 Aligned_cols=256 Identities=13% Similarity=0.063 Sum_probs=157.0
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCh-------hhHHHHHHHHHhCCCccHHHHHHHHHH--h--CCCCC-CHHHHHHHHH
Q 017414 16 VAGYAKVGDLNNARALFELMTEKNV-------ISWTTLIAGYAQMDQPNEAITLFRRMQ--V--ENVKP-DEIAMLAALS 83 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~--~--~~~~p-~~~~~~~l~~ 83 (372)
..-+++.|+...-+.+|+...+... ..|..|..+|.-.+++.+|+++...=+ . .|-+. ....-..|.+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4557899999999999998887433 346666667777777888877643211 0 01110 1112223444
Q ss_pred HHHccCChHHHHHHHH----HHHHcC--CCCchhHHHHHHHHHHhcCC--------------------HHHHHHHHHhcc
Q 017414 84 ACAQLGAVELGEWIHN----YIEQYG--LNTIVPLNNALIDMYAKSGK--------------------IGKALQVFENMK 137 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~----~~~~~~--~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~ 137 (372)
.+--.|.+++|.-.-. ...+.| +......|| |...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYN-lgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYN-LGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhh-hhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4445566666554322 222222 111223343 6777766553 233444443211
Q ss_pred c---------CCcchHHHHHHHHHhcCChhHHHHHHHHHHH----cCCC-CCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 138 N---------KSVITWTTMIAGLALHGLGREALDMFSRMER----ARVK-PNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 138 ~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
+ .-..+|..|...|.-.|+++.|+..-+.-+. -|-+ .....+..+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 1224677777777788999999876654332 2222 123467778888888999999999888654
Q ss_pred H---hcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-------C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 017414 204 S---RYG-IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-------P-FEANAAIWGSLLAASNIYGDVELGECALQHLI 271 (372)
Q Consensus 204 ~---~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (372)
. +.| -.....+..+|...|.-...+++|+..+.+- + .--....+.+|..++...|..++|..+.+...
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 111 1224466677888888888899998877654 1 12245678889999999999999998888776
Q ss_pred H
Q 017414 272 K 272 (372)
Q Consensus 272 ~ 272 (372)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 6
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.04 E-value=0.013 Score=44.09 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=61.7
Q ss_pred HHHHHHHHH---HHHhcCCHHHHHHHHhccCC-------CC------------------hhhHHHHHHHHHhCCCccHHH
Q 017414 9 YKFWNTMVA---GYAKVGDLNNARALFELMTE-------KN------------------VISWTTLIAGYAQMDQPNEAI 60 (372)
Q Consensus 9 ~~~~~~l~~---~~~~~~~~~~A~~~~~~~~~-------~~------------------~~~~~~l~~~~~~~~~~~~A~ 60 (372)
...|..++. .....++.+.+...+..+.. ++ ......++..+...|++++|+
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 444555533 33556788888877776653 11 012344555666778888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-----HcCCCCchhHH
Q 017414 61 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE-----QYGLNTIVPLN 113 (372)
Q Consensus 61 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 113 (372)
.+.+++.... +.+...|..++.++...|+...|.+.|+.+. +.|++|+..+-
T Consensus 83 ~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 83 RLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 8888887753 4466677788888888888888888877765 34777776553
No 218
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.01 E-value=0.19 Score=43.25 Aligned_cols=261 Identities=14% Similarity=0.094 Sum_probs=149.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 90 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 90 (372)
+|..+...-...|+.+-|..+++.=+.+.. =+-.+.+.|+.+.| +.+..+.| .||.. |..++..-.+..
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~~~-----qVplLL~m~e~e~A---L~kAi~Sg-D~DLi-~~vLl~L~~~l~- 70 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEPRASK-----QVPLLLKMGEDELA---LNKAIESG-DTDLI-YLVLLHLKRKLS- 70 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCChHH-----HHHHHhcCCchHHH---HHHHHHcC-CccHH-HHHHHHHHHhCC-
Confidence 577888888999999999999876444322 23345566666666 44566655 44433 334444332222
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 91 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
.. +++ .+... .|.. ..+...|++..+.+.-..+|.+-.+....+...+-.++.. .+.++-...+....+.
T Consensus 71 ~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~a~~~ 140 (319)
T PF04840_consen 71 LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQAQKL 140 (319)
T ss_pred HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 11 122 23322 2221 2345556666666666666654332222222223333322 3444433333333321
Q ss_pred -CCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 017414 171 -RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 249 (372)
Q Consensus 171 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (372)
+-..+......++.-. -+-.++-+.+.++++......+.+..+.-+...|+...|.++-.+..+ |+..-|..
T Consensus 141 y~~~k~~~f~~~~~e~q------~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~l 213 (319)
T PF04840_consen 141 YSKSKNDAFEAKLIEEQ------IKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWL 213 (319)
T ss_pred HHhcchhHHHHHHHHHH------HHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHH
Confidence 0011111111221111 122233333444434333333455567777889999999999999874 78999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
.+.+++..+++++...+... ..+|.-|.-.+.+|.+.|+..+|..+...+
T Consensus 214 ki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 214 KIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKYIPKI 263 (319)
T ss_pred HHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999999988877542 235678999999999999999999998874
No 219
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.96 E-value=0.041 Score=40.52 Aligned_cols=62 Identities=26% Similarity=0.252 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc
Q 017414 218 MIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 279 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 279 (372)
-.....+.|++++|.+.|+.+ +..| ....-..++.++.+.++++.|...+++.++++|.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344455677777777777776 2222 3345566777777788888888888888887776654
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.015 Score=49.99 Aligned_cols=94 Identities=18% Similarity=0.111 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 290 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 290 (372)
.++..+.-+|.+.+++.+|+..-.+. .. ++|......=..++...|+++.|...|++++++.|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45677888999999999999988776 33 45777777778899999999999999999999999999888999888887
Q ss_pred cCCchhH-HHHHHHHHh
Q 017414 291 LGRWNES-GKIRKVMRD 306 (372)
Q Consensus 291 ~g~~~~a-~~~~~~m~~ 306 (372)
..+..+. .++|..|..
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 7766665 568888854
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.93 E-value=0.0021 Score=42.47 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHh----CCC---CcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKL----EPH---NSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+++.+...|...|++++|+..++++.++ ++. ...++..++.++...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666777777777777666652 221 13456667777777777777777776543
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.86 E-value=0.26 Score=42.55 Aligned_cols=249 Identities=15% Similarity=0.088 Sum_probs=162.5
Q ss_pred hHHHHHHHHHh--CCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCchhH--HHH
Q 017414 42 SWTTLIAGYAQ--MDQPNEAITLFRRMQVENVKPDEIAMLAALSA--CAQLGAVELGEWIHNYIEQYGLNTIVPL--NNA 115 (372)
Q Consensus 42 ~~~~l~~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 115 (372)
-|.+|-.++.. .|+-..|.++-.+..+. +..|...+..++.+ -.-.|+++.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 46666666655 46677777666555432 45566666666644 34569999999999999863 32221 233
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhc--
Q 017414 116 LIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEI--TFIAILSACC-- 187 (372)
Q Consensus 116 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~--~~~~l~~~~~-- 187 (372)
|.-.--+.|..+.|.++-++.-. | -...+.+.+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33444578899999988887654 2 23578889999999999999999998876543 344432 2222332221
Q ss_pred -ccCchHHHHHHHHHhHHhcCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHH
Q 017414 188 -HVGLVELGRRYFNIMKSRYGIEPKIEQYG-CMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 188 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
-..+...|...-.+.. ++.|+...-. .-..++.+.|+..++-.+++.+ ...|.+..+..++. .+.|+ .+.
T Consensus 240 ~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gd--ta~ 312 (531)
T COG3898 240 LLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGD--TAL 312 (531)
T ss_pred HhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCC--cHH
Confidence 1234556666555554 5667654332 3457889999999999999998 66777766554443 34444 333
Q ss_pred HHHH---HHHHhCCCCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 265 CALQ---HLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 265 ~~~~---~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
.-++ ++..+.|++......+..+-...|++..|..--
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 3333 444577988888888899988899888776533
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.80 E-value=0.14 Score=46.79 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=111.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHhcc----cCchHHHHHHHHHhHHhcCCCcCHHH
Q 017414 145 TTMIAGLALHGLGREALDMFSRMERARVKPNE------ITFIAILSACCH----VGLVELGRRYFNIMKSRYGIEPKIEQ 214 (372)
Q Consensus 145 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 214 (372)
..+++...=.|+-+.+++.+.+..+.+---.. ..|..++..++. ..+.+.|.+++..+..+ -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 34455556679999999999887664311122 234444444433 45778899999999965 456555
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHhhC-CCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHH-HH
Q 017414 215 YGC-MIDLLGRAGYLQEAEKLLRRM-PFE-----ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL-SN 286 (372)
Q Consensus 215 ~~~-li~~~~~~g~~~~a~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~~ 286 (372)
|.. -.+.+...|++++|.+.|++. ..+ .....+.-+...+....++++|...+..+.+....+..+|..+ +.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 543 356777899999999999976 111 1233455566778889999999999999999887777676555 45
Q ss_pred HHHHcCCc-------hhHHHHHHHHHh
Q 017414 287 IYAILGRW-------NESGKIRKVMRD 306 (372)
Q Consensus 287 ~~~~~g~~-------~~a~~~~~~m~~ 306 (372)
++...|+. ++|.++|.+...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 56778888 888888887743
No 224
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.13 Score=44.70 Aligned_cols=152 Identities=13% Similarity=-0.053 Sum_probs=77.9
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchH---------------HHH
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITW---------------TTM 147 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~l 147 (372)
.++...|+.++|.++-...++.. +.+....-.-..++.-.++.++|...|++..+.|+... ..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 34455666666666665555543 22222222222334445666777777776665433221 112
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHH
Q 017414 148 IAGLALHGLGREALDMFSRMERA---RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLG 223 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~ 223 (372)
..-..+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+.++|+.--+... .+.+. +..|..-..++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHH
Confidence 22345566677777777666653 233444555555566666677776666666555 22222 122222233444
Q ss_pred hcCCHHHHHHHHhhC
Q 017414 224 RAGYLQEAEKLLRRM 238 (372)
Q Consensus 224 ~~g~~~~a~~~~~~~ 238 (372)
..+++++|.+-|++.
T Consensus 333 ~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666666654
No 225
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.75 E-value=0.12 Score=37.23 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=85.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 017414 151 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 230 (372)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (372)
+.-.|..++..++..+..... +..-++-+|.-....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 345677777888877776542 3344554544444444555555666665542221 13445555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 231 AEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
....+-.++ .+.......+..+...|+-+...+++..+.+.+..+|.....++.+|.+.|+..++.+++++.-+.|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555555543 345556667778888999999999999998766667888999999999999999999999999998885
No 226
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.73 E-value=0.29 Score=41.39 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=92.0
Q ss_pred HhcCCHHHHHHHHhccCC------CCh------hhHHHHHHHHHhCC-CccHHHHHHHHHHhC--------CCCCCH---
Q 017414 20 AKVGDLNNARALFELMTE------KNV------ISWTTLIAGYAQMD-QPNEAITLFRRMQVE--------NVKPDE--- 75 (372)
Q Consensus 20 ~~~~~~~~A~~~~~~~~~------~~~------~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~--------~~~p~~--- 75 (372)
.++|+++.|..++.+... |+. ..||.-.. ..+.+ +++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 468999999999988764 221 13444444 44455 888887777665432 123332
Q ss_pred --HHHHHHHHHHHccCChH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHH
Q 017414 76 --IAMLAALSACAQLGAVE---LGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTM 147 (372)
Q Consensus 76 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 147 (372)
.++..++.++...+..+ +|..+++.+.+. .+..+.++..-++.+.+.++.+.+.+++.+|... ....+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 35666777777777655 444555555433 2333555555677777788888888888888753 22455555
Q ss_pred HHHHHh--cCChhHHHHHHHHHHHcCCCCCH
Q 017414 148 IAGLAL--HGLGREALDMFSRMERARVKPNE 176 (372)
Q Consensus 148 ~~~~~~--~~~~~~a~~~~~~~~~~~~~p~~ 176 (372)
+..+.. ......|...+..+....+.|..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 554422 23345566666666655445444
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.021 Score=49.17 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=82.1
Q ss_pred HHHHHhcCCHHHHHHHHhccCC------------------CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHH
Q 017414 16 VAGYAKVGDLNNARALFELMTE------------------KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA 77 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 77 (372)
.+.|.+.|++..|..-|++... .-..+++.|..++.+.+++..|++..++.+..+ +++.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 4567888888888888777432 112357777788888888888888888888765 556667
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhcc
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA-LQVFENMK 137 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 137 (372)
...-..++...|+++.|+..|+++.+.. |.|..+-+.|+.+-.+....... .++|..|-
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7677778888888888888888888764 44555555666555554444332 45555553
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.72 E-value=0.025 Score=41.10 Aligned_cols=99 Identities=7% Similarity=0.067 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
|..++.++|.++++.|+++....+.+..-..++.. -...+. .-......|+..+..+++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 56778888888888888888888877653311100 000000 12233456777777777777777
Q ss_pred cCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHh
Q 017414 88 LGAVELGEWIHNYIEQY-GLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 122 (372)
.+++..|.++.+...+. +++.+..+|..|+.-...
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777766643 555566777777665433
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=96.71 E-value=0.052 Score=40.97 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=37.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc---ccCCcchHHHHHHHHHhcCChhHHHHH
Q 017414 87 QLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENM---KNKSVITWTTMIAGLALHGLGREALDM 163 (372)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 163 (372)
..|++++|..+|+.+.-.+ +-+...+..|..++-..+++++|...|... ...|+..+-....+|...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 4445555555554444433 223334444444444455555555544422 123444444444555555555555555
Q ss_pred HHHHHH
Q 017414 164 FSRMER 169 (372)
Q Consensus 164 ~~~~~~ 169 (372)
|.....
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 554444
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.71 E-value=0.04 Score=48.69 Aligned_cols=65 Identities=15% Similarity=0.047 Sum_probs=49.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh----hhHHHHHHHHHhCCCccHHHHHHHHHHhC
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--KNV----ISWTTLIAGYAQMDQPNEAITLFRRMQVE 69 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 69 (372)
.|.+...|+.+..+|.+.|++++|+..|++..+ |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677788888888888888888888877654 432 34778888888888888888888888764
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.57 E-value=0.23 Score=43.25 Aligned_cols=166 Identities=14% Similarity=0.040 Sum_probs=102.3
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCchhH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVEN---VKPDEIAMLAALSACAQ---LGAVELGEWIHNYIEQYGLNTIVPL 112 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 112 (372)
+..+.-.++-+|....+++..+++++.+.... +.-+...-....-++.+ .|+.++|..++..+....-.+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 44444466666888899999999998887641 11122222233445555 7889999999988666656788888
Q ss_pred HHHHHHHHHh---------cCCHHHHHHHHHhcccCCcchHHH--HHHHHHhcCCh----hHHHHHH---HH-HHHcC--
Q 017414 113 NNALIDMYAK---------SGKIGKALQVFENMKNKSVITWTT--MIAGLALHGLG----REALDMF---SR-MERAR-- 171 (372)
Q Consensus 113 ~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~--l~~~~~~~~~~----~~a~~~~---~~-~~~~~-- 171 (372)
+..++..|.. ...+++|+..|.+.-+.+...|+- +...+...|.. .+..++- .. +.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 8888776643 224788999888765433322221 11122223321 1222222 11 22233
Q ss_pred -CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 172 -VKPNEITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 172 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
-..+--.+..++.++.-.|+.++|.+..+.+.+
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 234455667888888899999999999999984
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.52 E-value=0.12 Score=38.03 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=51.3
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHH--Hc
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAASN--IY 257 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~--~~ 257 (372)
...+.|++++|.+.|+.+..++...+- ...-..++.+|.+.|++++|...+++. |..|+.. |...+.++. ..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHHHHH
Confidence 344567777777777777765433332 244455667777777777777766665 3333322 222222221 11
Q ss_pred C---------------ChhHHHHHHHHHHHhCCCCc
Q 017414 258 G---------------DVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 258 ~---------------~~~~a~~~~~~~~~~~p~~~ 278 (372)
. ....|..-|+.+++..|++.
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 1 14566677777777777654
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.072 Score=44.85 Aligned_cols=156 Identities=12% Similarity=-0.016 Sum_probs=112.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH----HHHHHHHHhcCC
Q 017414 152 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY----GCMIDLLGRAGY 227 (372)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~ 227 (372)
-..|++.+|-..++++++. .+.|...++..=.+|...|+...-...++++.. ...++...| ..+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4577888888888888876 455777777777888889998888888888874 334444322 334445567899
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC----cchHHHHHHHHHHcCCchhHHHHH
Q 017414 228 LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN----SGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 228 ~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
+++|++.-++. .++| |.....++...+-..|++.++.+++.+-...-... ...|-.....+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988887 5444 77788888888888999999998887766533221 224555666777789999999999
Q ss_pred HHHHhCCCc
Q 017414 302 KVMRDMGVK 310 (372)
Q Consensus 302 ~~m~~~g~~ 310 (372)
+.=.-..+.
T Consensus 271 D~ei~k~l~ 279 (491)
T KOG2610|consen 271 DREIWKRLE 279 (491)
T ss_pred HHHHHHHhh
Confidence 865433343
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.13 E-value=0.17 Score=43.15 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=23.0
Q ss_pred HhCCCccHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHHH
Q 017414 51 AQMDQPNEAITLFRRMQVE--NVKPDEIAMLAALSACAQLGAVELGEW 96 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 96 (372)
....+..+|+..|.+-+.. ...-.-.+|..+..+.+..|.++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3455666666666655542 011112344455555555555555443
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.22 Score=42.06 Aligned_cols=182 Identities=9% Similarity=-0.000 Sum_probs=120.2
Q ss_pred HHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH----HHHHHhcccCch
Q 017414 120 YAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFI----AILSACCHVGLV 192 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~~ 192 (372)
....|+..+|-..++++.+ .|..+++.-=.++...|+.+.-...++++... ..|+...|. .+.-.+...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4456888888888888875 36677887788899999999999999888765 234433332 333445578999
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC------HHHHHHHHHHHHHcCChhHHHHH
Q 017414 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEAN------AAIWGSLLAASNIYGDVELGECA 266 (372)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~ 266 (372)
++|++.-++..+ --+.|.-.-.++...+-..|++.++.++..+-...-+ ..-|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999888873 1133455566778888889999999999887621111 11222233344566899999999
Q ss_pred HHHHHH--hCCCCcch---HHHHHHHHHHcCCchhHHHHHHHH
Q 017414 267 LQHLIK--LEPHNSGN---YAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 267 ~~~~~~--~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
|+.-+- +..++..+ |..+-........+.+-..+-+.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 986553 66777633 333344444555555555444444
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.02 E-value=0.62 Score=37.49 Aligned_cols=222 Identities=16% Similarity=0.071 Sum_probs=144.9
Q ss_pred CCCccHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHH
Q 017414 53 MDQPNEAITLFRRMQVENVK-PDEIAMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIVPLNNALIDMYAKSGKIGKAL 130 (372)
Q Consensus 53 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 130 (372)
.+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566666666554321 12456666777777788888877777776652 23445566666777777778888888
Q ss_pred HHHHhcccC--Cc-chHHHHHH-HHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 131 QVFENMKNK--SV-ITWTTMIA-GLALHGLGREALDMFSRMERARV--KPNEITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 131 ~~~~~~~~~--~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
..+...... +. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888876642 21 23333333 67888888888888888755321 12233444444446677888888888888884
Q ss_pred hcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 205 RYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 205 ~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
. .+. ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.......|.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2 233 3566777788888888888888888777 44444 444555555555667788888888888887775
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.77 Score=38.28 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=76.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 017414 150 GLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 229 (372)
.....|++.+|..+|+........ +......++..|...|+.+.|..++..+..+.. .........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 445566777777777766655322 233444566666777777777777766653210 111111122334444444444
Q ss_pred HHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC--CCCcchHHHHHHHHHHcCCchh
Q 017414 230 EAEKLLRRMPFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLE--PHNSGNYAILSNIYAILGRWNE 296 (372)
Q Consensus 230 ~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~ 296 (372)
+..++-.+..-.| |...-..+...+...|+.+.|...+-.+.+.+ -.+..+-..|+..+.-.|.-+.
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 4444444442234 55555556666666677776666655555532 3355566666666666664443
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.98 E-value=0.44 Score=35.47 Aligned_cols=126 Identities=10% Similarity=0.030 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 223 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 223 (372)
...++..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+....++. . ++......+++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHHHH
Confidence 4455666666667777777777776665 245566777777776543 3333333331 0 11222234666666
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 224 RAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY-GDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
+.+.++++.-++.+++. +...+..+... ++++.|.+++.+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77777777777777652 22233333333 666777666654 234456666665554
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.98 E-value=0.092 Score=43.04 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=55.9
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCC-CHHHHHHHH
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGI-EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLL 251 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~l~ 251 (372)
.|+.-+.. .+.|++..|...|....+++.- .-....+..|..++...|++++|..+|..+ |..| -+..+..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45554443 3445567777666666653211 012234455666666666666666666655 2223 224455555
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
.+....|+.+.|...|+++.+..|..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 566666666666666666666666544
No 240
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.97 E-value=0.64 Score=42.98 Aligned_cols=207 Identities=14% Similarity=0.110 Sum_probs=112.0
Q ss_pred HHHHHHHHHhcCCHH--HHHHHHhccCCCChhh-HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC-HHHH-----HHHH
Q 017414 12 WNTMVAGYAKVGDLN--NARALFELMTEKNVIS-WTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAM-----LAAL 82 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~-----~~l~ 82 (372)
++..=++|.+.++.. +.+.-++++.+..... --.+...++-.|++.+|-++|.+- |.... ...| ....
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~a 677 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYA 677 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHH
Confidence 455556777766544 3334445555433211 122345566666777776666432 22111 0111 1234
Q ss_pred HHHHccCChHHHHHHHHHHHHc--CC-CCchhHHHHHHHHHHhcCCHHHHHHH-------------HHhcccCCcchHHH
Q 017414 83 SACAQLGAVELGEWIHNYIEQY--GL-NTIVPLNNALIDMYAKSGKIGKALQV-------------FENMKNKSVITWTT 146 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~~~~~ 146 (372)
+-+...|+.++-..+.++-.+- ++ +|. .-..++..+|+.++|..+ -+++...+..+...
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~ 752 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLL 752 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHH
Confidence 4455556555544444332211 11 222 234555566666666554 33344445566666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHH-----------H
Q 017414 147 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ-----------Y 215 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~ 215 (372)
+...+.+...+.-|-++|.+|-+. ..++......+++++|..+-+... .+.|++.. +
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP---e~~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP---EFKDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---cccccccchHHHHhhhhhhH
Confidence 666677777788888888877532 346777889999999999888776 34555421 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
.---.+|.++|+-.+|.++++++
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHh
Confidence 11223555666666666666665
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.95 E-value=0.085 Score=43.33 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=76.2
Q ss_pred HHHHHhccC--CCChhhHHHHHHHHHhC-----CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-----------
Q 017414 28 ARALFELMT--EKNVISWTTLIAGYAQM-----DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG----------- 89 (372)
Q Consensus 28 A~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 89 (372)
.++.|.... ++|-.+|-+.+..+... +..+-.-..+..|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 46777888888777654 556666677788999999999999999999876543
Q ss_pred -----ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 017414 90 -----AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 125 (372)
Q Consensus 90 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 125 (372)
+-+-++.++++|...|+.||..+-..|++++.+.|-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224578899999999999999999999999987664
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.86 E-value=0.4 Score=43.32 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=98.9
Q ss_pred HHHHhCCCccHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 017414 48 AGYAQMDQPNEAITLFR--RMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 125 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~--~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 125 (372)
....-.++++++.+... ++.. .+ .....+.++.-+.+.|..+.|.++-.. + ..-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCC
Confidence 34455677888766664 2221 12 244567778888888888888766432 2 124566778888
Q ss_pred HHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 126 IGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+....+
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888888877665 556888999999999999999888887542 344555566678877777777776643
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 017414 206 YGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP 239 (372)
Q Consensus 206 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 239 (372)
|- ++....++.-.|+.++..+++.+.+
T Consensus 403 -~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 -GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 21 3445556666788888888887765
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.85 E-value=0.75 Score=37.01 Aligned_cols=218 Identities=18% Similarity=0.132 Sum_probs=157.2
Q ss_pred cCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCcchHHHHHHHHHhcCChhHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLN-TIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~ 161 (372)
.+....+...+......... .....+......+...+++..+...+..... .....+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555666665554322 1356677788889999999999998887653 34456777777888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HhcccCchHHHHHHHHHhHHhcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 162 DMFSRMERARVKPNEITFIAILS-ACCHVGLVELGRRYFNIMKSRYGI--EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+.+.........+. ........ .+...|+++.|...+...... .. ......+......+...++.+.+...+.+.
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99999887644432 22222233 688999999999999998631 11 123344445555577889999999999887
Q ss_pred -CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 239 -PFEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 239 -~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
...++ ...+..+...+...++.+.+...+.......|.....+..+...+...+.++.+...+......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444 6778888888999999999999999999988875556667777777777789998888776543
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=95.84 E-value=0.89 Score=40.60 Aligned_cols=144 Identities=10% Similarity=0.016 Sum_probs=89.8
Q ss_pred ccHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHcc---------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 56 PNEAITLFRRMQVE-NVKPD-EIAMLAALSACAQL---------GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 56 ~~~A~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
.+.|+.+|.+.... .+.|+ ...|..+..++... .+..+|.+.-+...+.+ +.|......+..+..-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677778887721 23444 34444444333221 23456667777777776 667777777777777788
Q ss_pred CHHHHHHHHHhccc--CC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcccCchHHHHHHHH
Q 017414 125 KIGKALQVFENMKN--KS-VITWTTMIAGLALHGLGREALDMFSRMERARV-KPNEITFIAILSACCHVGLVELGRRYFN 200 (372)
Q Consensus 125 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 200 (372)
+++.|...|++... || ..+|........-.|+.++|.+.+++..+... +-........+..|+..+ .+.|..+|-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 88999999987764 33 34666666667778999999998888666421 112233444455666654 566666654
Q ss_pred H
Q 017414 201 I 201 (372)
Q Consensus 201 ~ 201 (372)
+
T Consensus 432 ~ 432 (458)
T PRK11906 432 K 432 (458)
T ss_pred h
Confidence 4
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.84 E-value=0.26 Score=40.49 Aligned_cols=86 Identities=20% Similarity=0.115 Sum_probs=43.3
Q ss_pred hcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHH
Q 017414 153 LHGLGREALDMFSRMERARVK--PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~ 229 (372)
+.|++..|...|...++.... -....+..|..++...|+++.|..+|..+.++++-.|.. ..+-.|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 444456666655555554210 011233345555555566666655555555544333332 44555555555555666
Q ss_pred HHHHHHhhC
Q 017414 230 EAEKLLRRM 238 (372)
Q Consensus 230 ~a~~~~~~~ 238 (372)
+|...|+++
T Consensus 233 ~A~atl~qv 241 (262)
T COG1729 233 EACATLQQV 241 (262)
T ss_pred HHHHHHHHH
Confidence 665555555
No 246
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.82 E-value=0.13 Score=42.22 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=73.8
Q ss_pred HHHHHhcc--cCCcchHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC------------
Q 017414 130 LQVFENMK--NKSVITWTTMIAGLAL-----HGLGREALDMFSRMERARVKPNEITFIAILSACCHVG------------ 190 (372)
Q Consensus 130 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------------ 190 (372)
...|.... ++|..+|.+.+..+.. .+..+-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34455554 4566677777776653 3556767777888999999999999999998876543
Q ss_pred ----chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 017414 191 ----LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 191 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (372)
+-+-++.++++|. .+|+.||..+-..|+.++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 3355789999998 569999999999999999887753
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.70 E-value=1.2 Score=40.79 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=72.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcC-CCCch-----hHHHHHHHHHHh----cCCHHHHHHHHHhccc--CCcchHHHH
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYG-LNTIV-----PLNNALIDMYAK----SGKIGKALQVFENMKN--KSVITWTTM 147 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~~l 147 (372)
.++....=.||.+.+.+.+....+.+ +.-.. -.|+..+..++. ....+.|.++++.+.+ |+...|...
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 44555555566666666665554422 11111 112222222222 3355666666666655 444433322
Q ss_pred -HHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHH-HHH
Q 017414 148 -IAGLALHGLGREALDMFSRMERAR---VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI-DLL 222 (372)
Q Consensus 148 -~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~ 222 (372)
...+...|+.++|++.|++..... .+.....+--+.-.+.-..++++|...|..+.+.... +...|.-+. -++
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~ 350 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHHHHHHH
Confidence 234455666666666666544211 0111223333444455566666666666666643222 222232222 233
Q ss_pred HhcCCH-------HHHHHHHhhC
Q 017414 223 GRAGYL-------QEAEKLLRRM 238 (372)
Q Consensus 223 ~~~g~~-------~~a~~~~~~~ 238 (372)
...|+. ++|.++|.+.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHH
Confidence 345555 6666666665
No 248
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.59 E-value=0.58 Score=35.65 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=90.3
Q ss_pred CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh-H--H
Q 017414 38 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVP-L--N 113 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~ 113 (372)
.+...|..-+. +.+.+..++|+..|..+.+.|...-++ ..........+.|+...|...|+++-.....|-+. - -
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34456666665 467788899999999988876543322 22234455678888999999998887754334322 0 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 017414 114 NALIDMYAKSGKIGKALQVFENMKNKS----VITWTTMIAGLALHGLGREALDMFSRMERARVKPN 175 (372)
Q Consensus 114 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 175 (372)
.--.-.+...|.++....-.+-+..+. ...-.+|.-+-.+.|++.+|.+.|.++......|-
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 111234667888888888887776432 13456677777889999999999998876544443
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=95.57 E-value=1.3 Score=39.61 Aligned_cols=158 Identities=10% Similarity=0.084 Sum_probs=101.9
Q ss_pred chH--HHHHHHHHhcC-----ChhHHHHHHHHHHH-cCCCCCH-HHHHHHHHHhc---------ccCchHHHHHHHHHhH
Q 017414 142 ITW--TTMIAGLALHG-----LGREALDMFSRMER-ARVKPNE-ITFIAILSACC---------HVGLVELGRRYFNIMK 203 (372)
Q Consensus 142 ~~~--~~l~~~~~~~~-----~~~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 203 (372)
..| ..++.+..... ..+.|+.+|.+... ....|+- ..|..+...+. ......+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 55555544422 24678888888872 2245553 33333332221 1234556677777777
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 204 SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
+ --+.|+.....+..++.-.|+++.|..+|++. .+.||. .+|......+.-.|+.++|.+.++++.++.|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 23456777777888888888899999999998 666754 4555555667788999999999999999999754333
Q ss_pred H--HHHHHHHHcCCchhHHHHHH
Q 017414 282 A--ILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 282 ~--~l~~~~~~~g~~~~a~~~~~ 302 (372)
. ..+..|.. ...+.|+++|-
T Consensus 410 ~~~~~~~~~~~-~~~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVP-NPLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcC-CchhhhHHHHh
Confidence 2 22334444 45777887663
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=2.3 Score=40.73 Aligned_cols=174 Identities=13% Similarity=0.039 Sum_probs=115.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCChhhH----HHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTEKNVISW----TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
..-++.+.+..-++-|+.+-+.-.. +.... ..-.+.+.+.|++++|...|-+-... +.|. .++.-+...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 4567777788888888887765443 22222 23334456789999999888776543 2332 245556666
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcc--hHHHHHHHHHhcCChhHHHHHHHH
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVI--TWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
.....-..+++.+.+.|+.. ...-..|+.+|.+.++.++-.++.+... .+.. -....+..+.+.+-.++|..+-.+
T Consensus 411 q~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 67777788888888888654 4444679999999999999988888766 2222 245566777777777777766554
Q ss_pred HHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 167 MERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 167 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
... .......++ -..+++++|.+++..+.
T Consensus 489 ~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 489 FKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred hcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 332 233344433 45688888888887664
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=1 Score=36.48 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-C------CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHH----hCCCCcchHH
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRM-P------FEANA-AIWGSLLAASNIYGDVELGECALQHLIK----LEPHNSGNYA 282 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~-~------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~~ 282 (372)
+....+.+.+..++++|-..+.+- . .-++. ..|...|-.+.-..++..|+..++...+ .++.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 333444555555665555444433 1 11221 2234444445555677777777776554 3355556666
Q ss_pred HHHHHHHHcCCchhHHHH
Q 017414 283 ILSNIYAILGRWNESGKI 300 (372)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~ 300 (372)
.|+.+|- .|+.+++..+
T Consensus 233 nLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHhc-cCCHHHHHHH
Confidence 6666553 4455555543
No 252
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.51 E-value=0.1 Score=43.47 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|++.|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344455555666666666666666666666666666666666666666666666666654
No 253
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.48 E-value=0.061 Score=28.48 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
.|..+...+...|++++|++.++++.++.|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666777778888888888888888777753
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.45 E-value=0.74 Score=34.24 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=20.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (372)
++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3444444445555555555555444 24444555555555543
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.44 E-value=0.044 Score=29.15 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
.+|..+..++...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777788888888888888888887774
No 256
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=2.5 Score=39.96 Aligned_cols=283 Identities=13% Similarity=0.032 Sum_probs=165.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCC---hhhHHHHHHHHHhCCCc--cHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTEKN---VISWTTLIAGYAQMDQP--NEAITLFRRMQVENVKPDEIAMLAALSACA 86 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 86 (372)
-..+++-+...+.+..|+++-..+..|. ...|......+.+..+. +++++...+=..... -....|..+.+...
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 3567778888888888888888877664 45667777777766432 233333333222222 23345666666667
Q ss_pred ccCChHHHHHHHHHHHHcCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-Cc--------------chHHHH
Q 017414 87 QLGAVELGEWIHNYIEQYGLN----TIVPLNNALIDMYAKSGKIGKALQVFENMKNK-SV--------------ITWTTM 147 (372)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--------------~~~~~l 147 (372)
..|+.+.|..+++.=...+.. .+..-+..-+.-+...|+.+-...++-.+.+. +. ..|.-+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 788888888776643332211 11222334455566677777666666555431 11 111111
Q ss_pred HH--------HHHhcCChhHHHHHHH--HHHH----cCCCCCHHHHHHHHHHhcccCc----------hHHHHHHHHHhH
Q 017414 148 IA--------GLALHGLGREALDMFS--RMER----ARVKPNEITFIAILSACCHVGL----------VELGRRYFNIMK 203 (372)
Q Consensus 148 ~~--------~~~~~~~~~~a~~~~~--~~~~----~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~ 203 (372)
+. .+.+.++-.++...|. ...+ .+..|+. .....+|.+... ..+-+.+.+.+.
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le 675 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE 675 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11 1111222222222221 1000 1222332 223333443322 223345556666
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHH
Q 017414 204 SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAI 283 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 283 (372)
.+++..-..-+.+--+.-+...|+..+|.++-.+.. -||-..|..-+.+++..+++++.+++-+.. . .|.-|.-
T Consensus 676 ~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAksk---k--sPIGy~P 749 (829)
T KOG2280|consen 676 DQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSK---K--SPIGYLP 749 (829)
T ss_pred HHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhcc---C--CCCCchh
Confidence 666655555556666777888999999999999986 478888888899999999988877665443 2 2456777
Q ss_pred HHHHHHHcCCchhHHHHHHHH
Q 017414 284 LSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m 304 (372)
....|.+.|+.++|.+++.+.
T Consensus 750 FVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHHHhcccHHHHhhhhhcc
Confidence 888999999999999998755
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.33 E-value=0.29 Score=35.27 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=23.0
Q ss_pred hcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 186 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
....|+.+.|++.|.+... -.+.....||.-.+++.-+|+.++|++=+++
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~ 102 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNK 102 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHH
Confidence 3444555555555554442 2223344455555555445555544444443
No 258
>PRK09687 putative lyase; Provisional
Probab=95.27 E-value=1.6 Score=36.96 Aligned_cols=242 Identities=14% Similarity=0.017 Sum_probs=147.4
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh----HHHHHHHHHHHHc
Q 017414 29 RALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV----ELGEWIHNYIEQY 104 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~ 104 (372)
..+++.+..+|.......+..+...|. .++...+..+.. .+|...-...+.++...|+. +++...+..+...
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~ 101 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE 101 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc
Confidence 344455566788777778888877775 444455555544 34556666677777777764 4566666655333
Q ss_pred CCCCchhHHHHHHHHHHhcCCH-----HHHHHHHHh-cccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 017414 105 GLNTIVPLNNALIDMYAKSGKI-----GKALQVFEN-MKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEIT 178 (372)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 178 (372)
.++..+....+.++...+.. ..+...+.. +..++..+-...+.++.+.++ .+++..+-.+... ++...
T Consensus 102 --D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~V 175 (280)
T PRK09687 102 --DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDV 175 (280)
T ss_pred --CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHH
Confidence 45666665566666555421 233444433 344566677777788877776 4567777666653 34444
Q ss_pred HHHHHHHhcccC-chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 017414 179 FIAILSACCHVG-LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY 257 (372)
Q Consensus 179 ~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (372)
-...+.++.+.+ ....+...+..+.. .++..+-...+.++.+.|...-.-.+.+.+. .++ .....+.++...
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhc
Confidence 444555555543 23456666666663 3566667778888888888544444445554 233 345677788888
Q ss_pred CChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 258 GDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
|.. +|...+..+.+..| |..+-...+.++.
T Consensus 249 g~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~~ 278 (280)
T PRK09687 249 GDK-TLLPVLDTLLYKFD-DNEIITKAIDKLK 278 (280)
T ss_pred CCH-hHHHHHHHHHhhCC-ChhHHHHHHHHHh
Confidence 885 68888888887677 5555555555543
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.27 E-value=1.4 Score=36.13 Aligned_cols=178 Identities=17% Similarity=0.131 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCC------cchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHH
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKNKS------VITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAIL 183 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~ 183 (372)
..|+. +..-.+.|++++|.+.|+.+.... ..+.-.++.++.+.+++++|+..+++....- -.|| ..|..-|
T Consensus 36 ~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Yl 113 (254)
T COG4105 36 ELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYL 113 (254)
T ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHH
Confidence 34443 333456688888888888776532 2344556667778888888888888877653 2333 2233333
Q ss_pred HHhc---cc----Cch---HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 017414 184 SACC---HV----GLV---ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAA 253 (372)
Q Consensus 184 ~~~~---~~----~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~ 253 (372)
.+.+ .. .+. ..|..-|+.+..++ +-+..+ .+|..-+..+... -...=..+.+-
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya--------------~dA~~~i~~~~d~-LA~~Em~Iary 176 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYA--------------PDAKARIVKLNDA-LAGHEMAIARY 176 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcch--------------hhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3322 11 222 23334444444321 111111 1111111111000 00001234556
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCCcc---hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 254 SNIYGDVELGECALQHLIKLEPHNSG---NYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
|.+.|.+-.|..-++.+++.-|..+. .+..+..+|...|-.++|.+.-+-+..+
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 78888888888888888886665443 4556677888889888888877766543
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.25 E-value=2.2 Score=38.46 Aligned_cols=145 Identities=13% Similarity=0.052 Sum_probs=78.7
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
.+|.-.-+..+++.-+++-.+.++ +.||-.+.-.++ +--......++++++++..+.| +.. +........
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-E~~------lg~s~~~~~ 242 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-EAS------LGKSQFLQH 242 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-HHh------hchhhhhhc
Confidence 445555566666666666666665 345543322222 1223445778888888877654 100 000000000
Q ss_pred CHHHHHHHHHhcccCC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHH
Q 017414 125 KIGKALQVFENMKNKS----VITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 125 ~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
. -..++....++ ..+-..+..+..+.|+.++|++.+++|.+....- .......|+.++...+.+.++..++
T Consensus 243 ~----g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 243 H----GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred c----cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 00111111222 2333456667778888888888888887653211 2335556778888888888888888
Q ss_pred HHhH
Q 017414 200 NIMK 203 (372)
Q Consensus 200 ~~~~ 203 (372)
.+--
T Consensus 319 ~kYd 322 (539)
T PF04184_consen 319 AKYD 322 (539)
T ss_pred HHhc
Confidence 7764
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.20 E-value=0.81 Score=33.18 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCC
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGI 208 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 208 (372)
...-+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++.++ |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 344566777888888888888887753 3667777778888888888888888888888765 54
No 262
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.20 E-value=2.1 Score=38.00 Aligned_cols=135 Identities=11% Similarity=0.108 Sum_probs=105.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 017414 140 SVITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCM 218 (372)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 218 (372)
-..+|...+....+..-.+.|..+|-+..+.| +.++...+++++..++. |+...|..+|+.-... ++.++.-.+..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567777888888888999999999999988 67788888999886654 7888999999987753 33333444566
Q ss_pred HHHHHhcCCHHHHHHHHhhC--CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 219 IDLLGRAGYLQEAEKLLRRM--PFEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~--~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
+.-+...++-+.|..+|+.. .+..+ ...|..+|.--...|+...+..+-+++.+.-|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 77788899999999999965 22333 5678899988899999999999988888888754
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=1.8 Score=36.22 Aligned_cols=117 Identities=12% Similarity=0.038 Sum_probs=66.2
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc----chHHHHHHHHHhcCChh
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV----ITWTTMIAGLALHGLGR 158 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 158 (372)
......|++.+|...|....... +-+...-..++.+|...|+.+.|..++..+..... ....+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34556777778888777777664 33455556677888888888888888877763211 11222334444444444
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 159 EALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
+...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44443333332 23 44444455566666667666665444433
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.01 E-value=0.68 Score=35.31 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=21.6
Q ss_pred hcCCHHHHHHHHhhC--CCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 224 RAGYLQEAEKLLRRM--PFEANAA-IWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 224 ~~g~~~~a~~~~~~~--~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
.+|-+++.....+.+ .-+|-.. .-..|.-+-.+.|++..|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 455555555555554 1112111 122233344455555555555555544
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.96 E-value=0.34 Score=34.95 Aligned_cols=88 Identities=16% Similarity=-0.028 Sum_probs=51.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH---HHHHHHHHHHHhc
Q 017414 149 AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI---EQYGCMIDLLGRA 225 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~ 225 (372)
-+++..|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|..=+++..+-.|-. +. ..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 3556677777777777776665 23455677777777777777777777777666432322 21 1222223344455
Q ss_pred CCHHHHHHHHhhC
Q 017414 226 GYLQEAEKLLRRM 238 (372)
Q Consensus 226 g~~~~a~~~~~~~ 238 (372)
|+.+.|..=|+..
T Consensus 129 g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 129 GNDDAARADFEAA 141 (175)
T ss_pred CchHHHHHhHHHH
Confidence 5666665555544
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.96 E-value=3.4 Score=41.29 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHH
Q 017414 116 LIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 195 (372)
Q Consensus 116 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 195 (372)
.++.-.+.|-+++|+.++.-=.+.-...|.+....+.....+++|--.|+..-+ ..-.+.+|...|++.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 333334444445554444322222223444444445555566666555553221 11234555666666666
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 196 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
..+..++.. +-..-..+-..|+..+...+++-+|-++..+.
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 666665542 11111222245566666666666666666555
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.96 E-value=2.4 Score=37.24 Aligned_cols=263 Identities=11% Similarity=0.020 Sum_probs=127.9
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCC---CC-CCHHHHHHHHHHHHcc
Q 017414 15 MVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN---VK-PDEIAMLAALSACAQL 88 (372)
Q Consensus 15 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~-p~~~~~~~l~~~~~~~ 88 (372)
.+.+.-+.|+|+...+....... ++...|.++... +.++++++....+++...- .. .....|........+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 35566788999997777777765 344455555543 7888888888887765421 00 0111222222222222
Q ss_pred CChHHHHHHHHHHHHc-------------------CCCCchhHHHHHHHHHHhcCCHHHHHHHHH--hcccCCcchHHHH
Q 017414 89 GAVELGEWIHNYIEQY-------------------GLNTIVPLNNALIDMYAKSGKIGKALQVFE--NMKNKSVITWTTM 147 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~l 147 (372)
..+.+..++.+..... ...++..++..++..-. .++. .+......+|..+
T Consensus 82 q~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~ 152 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKF 152 (352)
T ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHH
Confidence 2222222222221111 11233333333222110 0111 1112234577788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC--HHHHHHHHHHH
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKP---NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK--IEQYGCMIDLL 222 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~ 222 (372)
+..+.+.|+++.|...+..+...+..+ .......-++..-..|+..+|...++...+. .+... ......+...+
T Consensus 153 a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (352)
T PF02259_consen 153 AKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISNAELKSGL 231 (352)
T ss_pred HHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccHHHHhhcc
Confidence 888888888888888888877643111 2223333445556678888888888777752 11111 11111111110
Q ss_pred HhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHHHc------CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHc
Q 017414 223 GRAGYLQEAEKLL-RRMPFEANAAIWGSLLAASNIY------GDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 291 (372)
Q Consensus 223 ~~~g~~~~a~~~~-~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 291 (372)
.. ..+.....- .......-...+..+..-+... +..+.+...|+.+.+..|.....|..++..+.+.
T Consensus 232 ~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 232 LE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred cc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 00 000000000 0000000112223333333333 7778888999999998888777777777666543
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.92 E-value=2.2 Score=36.77 Aligned_cols=194 Identities=12% Similarity=0.079 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhc----cCC-CC----hhhHHHHHHHHHhCCCccHHHHHHHHHHhC-CCCCC---HH
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFEL----MTE-KN----VISWTTLIAGYAQMDQPNEAITLFRRMQVE-NVKPD---EI 76 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~----~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~---~~ 76 (372)
.+|..+.++.++.|.+++++..--. ..+ .| -.+|-.+.+++-+.-++.+++.+-..-... |..|. -.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3566666677777776666543211 111 11 234555666665556666666655444332 22221 12
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCC---C--CchhHHHHHHHHHHhcCCHHHHHHHHHhccc-------CCcc--
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYGL---N--TIVPLNNALIDMYAKSGKIGKALQVFENMKN-------KSVI-- 142 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~-- 142 (372)
...++..++...+.++++.+.|+...+... . ....++..|...|.+..++++|.-+..+..+ .|..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 233466777777788888888887765321 1 1346778888888888888887766554331 2322
Q ss_pred ----hHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 143 ----TWTTMIAGLALHGLGREALDMFSRMER----ARVKPN-EITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 143 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
....|.-++...|+.-+|.+..++..+ .|-+|. ......+.+.|...|+.+.|+.-|+.+.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 222344566677777777777766543 332222 2344566777888888888887777665
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.82 E-value=0.086 Score=30.12 Aligned_cols=28 Identities=36% Similarity=0.659 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhC
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVE 69 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 69 (372)
++..+...|.+.|++++|+++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555566665555555553
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.80 E-value=3 Score=37.67 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=67.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHH--HHHHHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP-F-EANAA--IWGSLLAAS 254 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~-~~~~~--~~~~l~~~~ 254 (372)
-..+...+.+.|+.++|.+.++++.+.............|+.++...+.+.++..++.+-. + -|.+. .|+..+-.+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 3456666778999999999999998653322244677889999999999999999998872 2 24433 344443333
Q ss_pred HHcCC---------------hhHHHHHHHHHHHhCCCCc
Q 017414 255 NIYGD---------------VELGECALQHLIKLEPHNS 278 (372)
Q Consensus 255 ~~~~~---------------~~~a~~~~~~~~~~~p~~~ 278 (372)
...++ -..|.+.++++.+.+|.-+
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 32332 1245577888888777533
No 271
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.72 E-value=0.65 Score=42.02 Aligned_cols=133 Identities=14% Similarity=0.064 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
..-.+.++..+-+.|..+.|+.+-.. + ..-.....+.|+.+.|.++.++ .++...|..|.....+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHc
Confidence 34488899999999999999988543 1 2234455678888888765432 24677888999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
|+++-|+..+.+... +..|+-.|.-.|+.++-.++.+.....+. ++....++...|+.++..+++.+
T Consensus 361 g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 361 GNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD--INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--HHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999888876543 45677778888888777777766554332 45555566667888888777664
No 272
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.68 E-value=0.16 Score=39.54 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=21.7
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 254 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
+.+++.++.|+.-..++++++|....+...-..+|.+...+++|+.-|+++
T Consensus 144 ~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki 194 (271)
T KOG4234|consen 144 LIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKI 194 (271)
T ss_pred HHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334444444444444444444433333333334444444444444444444
No 273
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.58 E-value=0.034 Score=29.72 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=22.4
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNAR 29 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~ 29 (372)
++.|.|..+|+.+...|...|++++|+
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 567888888888888888888888875
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=2.1 Score=34.77 Aligned_cols=26 Identities=4% Similarity=0.082 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQ 67 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~ 67 (372)
.|.--..+|....++++|-..+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34445555556666666666555554
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.47 E-value=3.1 Score=36.46 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC----CCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 242 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEP----HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
....+|..++..+.+.|.++.|...+..+....+ ..+.+...-++.+...|+..+|...++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4566788899999999999999999999888552 2466777888999999999999999888876333
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.42 E-value=1.5 Score=34.25 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHH--HH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNE--ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG--CM 218 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 218 (372)
.+..+...|++.|+.+.|++.|.++.+....|.. ..+..++......+++..+.....++..-..-..+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3445555556666666666666665554333322 2334455555556666666655555543211111111111 11
Q ss_pred H--HHHHhcCCHHHHHHHHhhC
Q 017414 219 I--DLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 219 i--~~~~~~g~~~~a~~~~~~~ 238 (372)
. -.+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1223456777777766665
No 277
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.34 E-value=2.2 Score=35.22 Aligned_cols=47 Identities=4% Similarity=-0.029 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHcCCCCchh---HHHHHHHHHHhcCCHHHHHHHHHhc
Q 017414 90 AVELGEWIHNYIEQYGLNTIVP---LNNALIDMYAKSGKIGKALQVFENM 136 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 136 (372)
.+++|..-|.+..+...+.... ....++..+.+.|++++....|.++
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5556666666555532222211 1223344555555555555554444
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.31 E-value=0.09 Score=28.49 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=13.8
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRM 66 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m 66 (372)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666666666666666653
No 279
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.19 E-value=1.6 Score=37.29 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cC----CHHHHHHHHHhcccC-------CcchHHHHHHHHHhcCC-
Q 017414 91 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAK--SG----KIGKALQVFENMKNK-------SVITWTTMIAGLALHGL- 156 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~- 156 (372)
++....+++.+.+.|+.-+..+|.+..-.... .. ...+|.++|+.|++. +-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566778888888887777666543333222 11 356788888888863 23355555443 3333
Q ss_pred ---hhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCc--hHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 157 ---GREALDMFSRMERARVKPNE--ITFIAILSACCHVGL--VELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 157 ---~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
.+.++.+|+.+.+.|...+. .....++..+..... ..++.++++.+.++ ++++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 36677888888887766543 333344433333222 44778888888876 88888877766543
No 280
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.14 E-value=4.7 Score=37.20 Aligned_cols=127 Identities=18% Similarity=0.121 Sum_probs=71.6
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCCh---hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNV---ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
++.+++..+|+.-++.-.+.|+++.+.-+|+++.-|-+ ..|---+......|+.+-|-.++....+.-++-...+..
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 45667777788888888888888888888877765422 233333333334477777776666555543322222222
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 130 (372)
.-...+-..|+++.|..+++.+.+.- +.-..+-..-+..-.+.|+.+.+.
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 22233344567777777777777653 222222233344455556655555
No 281
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=2.8 Score=40.18 Aligned_cols=177 Identities=11% Similarity=0.073 Sum_probs=102.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcC
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTI--VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHG 155 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (372)
...-+..+.+...++.|..+- ...+..++ ........+.+.+.|++++|...|-+-..-- --..+|.-|....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l--e~s~Vi~kfLdaq 411 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL--EPSEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC--ChHHHHHHhcCHH
Confidence 344555566666666665543 23333332 2333444556667788888877776543211 1123455566666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCC-cCHHHHHHHHHHHHhcCCHHHHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE-PKIEQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~ 234 (372)
+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... + |.. -|. ...+..+.+.+-.++|..+
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd~---e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFDV---ETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeeeH---HHHHHHHHHhChHHHHHHH
Confidence 667777777777777754 44455567778888888877776666554 2 221 133 2355666666777777777
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 017414 235 LRRMPFEANAAIWGSLLAASNIYGDVELGECALQHL 270 (372)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 270 (372)
-.+.+. +...... .+-..+++++|.+++..+
T Consensus 486 A~k~~~--he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 766642 2333333 334567788887776544
No 282
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.03 E-value=2.9 Score=34.31 Aligned_cols=55 Identities=20% Similarity=0.107 Sum_probs=32.7
Q ss_pred HHhCCCccHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 017414 50 YAQMDQPNEAITLFRRMQVEN--VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY 104 (372)
Q Consensus 50 ~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 104 (372)
-.+.|++++|.+.|+.+.... -+-...+...++-++.+.++++.|....++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 446677777777777766541 1123344455556666667777777666666654
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.98 E-value=0.15 Score=27.55 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555666666666666666553
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.83 E-value=0.86 Score=38.11 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCchhHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ-----YGLNTIVPLNNAL 116 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 116 (372)
++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666677777777777777777653 44667777777777777777777777776654 4666666555443
Q ss_pred HH
Q 017414 117 ID 118 (372)
Q Consensus 117 ~~ 118 (372)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.67 E-value=1.2 Score=34.79 Aligned_cols=92 Identities=13% Similarity=0.030 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC---CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC--CCCcch----H
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM---PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLE--PHNSGN----Y 281 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~----~ 281 (372)
..+..+.+.|++.|+.+.|.+.|.++ ...+ -...+..++......+++..+...+.++...- +.+... -
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 55677888888888888888888887 1122 23456777888888888888888888877622 222211 1
Q ss_pred HHHHHHHHHcCCchhHHHHHHHH
Q 017414 282 AILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 282 ~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
..-+..+...++|..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 12233456678899888877543
No 286
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.67 E-value=0.57 Score=32.12 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
.-+..+-++.+...++.|++....+.+.+|.+.+++..|.++|+-++.+.+.. ...|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 34566777777778889999999999999999999999999999999865543 336666664
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.60 E-value=0.63 Score=34.52 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHhhC-CCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 225 AGYLQEAEKLLRRM-PFEANAAIWGSL-LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 225 ~g~~~~a~~~~~~~-~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
.++++++..++..+ -++|+..-...+ ...+...|++++|.++++.+.+-.+..+..-..+..++...|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 45555555555555 223322221111 1123455566666666666555444333333333334444443
No 288
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.55 E-value=0.69 Score=31.35 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
+.-++.+-++.+...++.|++....+.+++|.+.+++..|.++++-++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45567777788888888999999999999999999999999999998865443 4446666554
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.54 E-value=4.1 Score=34.50 Aligned_cols=19 Identities=5% Similarity=0.001 Sum_probs=13.9
Q ss_pred HhCCCccHHHHHHHHHHhC
Q 017414 51 AQMDQPNEAITLFRRMQVE 69 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~ 69 (372)
.+.|+.+.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 4677888888888777653
No 290
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.48 E-value=0.22 Score=26.33 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
+|..+...+...|++++|...|+++.++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566667777777777777777777666
No 291
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=2.3 Score=39.17 Aligned_cols=150 Identities=17% Similarity=0.084 Sum_probs=101.8
Q ss_pred HhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHH
Q 017414 121 AKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN 200 (372)
Q Consensus 121 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 200 (372)
.-.|+++.|..++-.+.+ ...+.++.-+.+.|..++|+++ .+|...-. ....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHH
Confidence 345667777666655542 2344556666677777777654 23322211 22346788888888776
Q ss_pred HhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 201 IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
+.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.+..|.
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 655 55668899999999999999999998863 256677777788887777677666666665554
Q ss_pred HHHHHHHHHHcCCchhHHHHHHH
Q 017414 281 YAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
-..+|...|+++++.+++.+
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHh
Confidence 33467788999999988854
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.38 E-value=0.81 Score=34.57 Aligned_cols=82 Identities=22% Similarity=0.152 Sum_probs=48.2
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHhhC-CCCCCHHHHHHHH-HHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 214 QYGCMIDLL---GRAGYLQEAEKLLRRM-PFEANAAIWGSLL-AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 214 ~~~~li~~~---~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
+.+.|+..+ .+.++.+++..++..+ -.+|.......+- ..+...|++.+|.++++.+.+..|..+..-..+..++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 334444433 4567777777777777 3445444333322 2456778888888888887776666655555555555
Q ss_pred HHcCCch
Q 017414 289 AILGRWN 295 (372)
Q Consensus 289 ~~~g~~~ 295 (372)
...|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 5555443
No 293
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.30 E-value=8 Score=37.14 Aligned_cols=267 Identities=10% Similarity=-0.032 Sum_probs=133.2
Q ss_pred CHHHHHHHHhccCC-CCh-hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 017414 24 DLNNARALFELMTE-KNV-ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 101 (372)
Q Consensus 24 ~~~~A~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 101 (372)
..++...++++-.. |-. ..-......+.+.+++...+..+. . .+.+...-.....+....|+.++|......+
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46666666666554 322 222333344455666666655221 1 1334444455666666777766665555555
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHH------------------HHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHH
Q 017414 102 EQYGLNTIVPLNNALIDMYAKSGKIG------------------KALQVFENMKNKSVITWTTMIAGLALHGLGREALDM 163 (372)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~g~~~------------------~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 163 (372)
=..| ...+..++.+++.+.+.|.+. .|..+...+..........++..+ .++..+...
T Consensus 156 W~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~ 231 (644)
T PRK11619 156 WLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETF 231 (644)
T ss_pred hccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHH
Confidence 4444 333445556666665555432 232222222110011111122211 112222221
Q ss_pred HHHHHHcCCCCCHH--H-HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 164 FSRMERARVKPNEI--T-FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI--EQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 164 ~~~~~~~~~~p~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+.. +.|+.. . ....+.-+ ...+.+.|..++.......++.+.. ..+..+.......+..++|.+.+...
T Consensus 232 ~~~-----~~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~ 305 (644)
T PRK11619 232 ART-----TGPTDFTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDV 305 (644)
T ss_pred hhc-----cCCChhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhc
Confidence 111 122221 1 11122222 2345688888888775543443332 22334443444443356677777765
Q ss_pred -CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 239 -PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 239 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+...+......-+......++++.+...+..+.........-..=+++++...|+.++|...|+...
T Consensus 306 ~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 306 IMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred ccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2223444455555555578888887777777655333455566777888777888888888888763
No 294
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.08 E-value=3.2 Score=31.85 Aligned_cols=134 Identities=13% Similarity=0.069 Sum_probs=65.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 017414 60 ITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK 139 (372)
Q Consensus 60 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 139 (372)
.++.+-+.+.+++|+...+..++..+.+.|.+.... .+.+.++-+|.......+-.+. +....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 344455556677777777777777777777655433 3334444444333222221111 1223333333333333
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 140 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
=...+..+++.+...|++-+|+++.+...... . .....++.+..+.+|...-..+++-..
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~---~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-S---VPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-c---CCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22345556666777777777777766542221 1 112234445455555444444444443
No 295
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.90 E-value=6.6 Score=35.10 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=76.5
Q ss_pred hcccCc-hHHHHHHHHHhHHhcCCCcCHHHHHHHH----HHHHhc---CCHHH---HHHHHhhCCCCC----CHHHHHHH
Q 017414 186 CCHVGL-VELGRRYFNIMKSRYGIEPKIEQYGCMI----DLLGRA---GYLQE---AEKLLRRMPFEA----NAAIWGSL 250 (372)
Q Consensus 186 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~---g~~~~---a~~~~~~~~~~~----~~~~~~~l 250 (372)
+-+.|. -++|.++++.+..- .+-|...-+.+. .+|.+. ..+.. -...+++.++.| +...-+.|
T Consensus 389 lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 344454 77888888888742 122333333222 233321 22222 233444446555 34455555
Q ss_pred HHH--HHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 251 LAA--SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 251 ~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
..| +..+|++.++.-.-.-+.+..| ++.+|..++-++....++++|..++..+
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 554 4678999999988888889999 8999999999999999999999999754
No 296
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=92.77 E-value=0.13 Score=36.77 Aligned_cols=45 Identities=38% Similarity=0.581 Sum_probs=35.6
Q ss_pred ceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCccccccccccccCCC
Q 017414 314 GCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESDVA 370 (372)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~~~~~~ 370 (372)
+++|+.+ +.|++|+.+||+. ++...+...|+.|+.....++++++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e 46 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEE 46 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhh
Confidence 5677665 8999999999988 3335677889999998888877764
No 297
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.56 E-value=4.5 Score=32.32 Aligned_cols=180 Identities=15% Similarity=0.044 Sum_probs=100.2
Q ss_pred HHhcCCHHHHHHHHhccCC--CC-hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 017414 19 YAKVGDLNNARALFELMTE--KN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGE 95 (372)
Q Consensus 19 ~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 95 (372)
|-..|-+.-|.-=|.+... |+ +.+||-|.-.+...|+++.|.+.|+...+....-+ .+...-.-++.-.|++..|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhH
Confidence 3344445555544544332 43 46788888888889999999999998887542222 22222222344567888887
Q ss_pred HHHHHHHHcC-CCCchhHHHHHHHHHHhcCCHHHHHH-HHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 017414 96 WIHNYIEQYG-LNTIVPLNNALIDMYAKSGKIGKALQ-VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVK 173 (372)
Q Consensus 96 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (372)
+-+...-+.. -.|-...|.-+. ...-+..+|.. +.++..+.|..-|..-|-.|.- |+.. ...+++++.+.. .
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a-~ 227 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADA-T 227 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc-c
Confidence 7766666553 122222222222 22334555544 4455555554444443333321 1111 122333333221 1
Q ss_pred CC-------HHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 174 PN-------EITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 174 p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
.+ ..||..+.+.+...|+.++|..+|+-....
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11 357888999999999999999999988854
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.49 E-value=0.24 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHh
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQV 68 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 68 (372)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666554
No 299
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.43 E-value=19 Score=39.28 Aligned_cols=66 Identities=8% Similarity=-0.016 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 243 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
-...|....+.....|.++.|...+-.+.+.++ +..+...++.....|+...|+.++++......+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 346788888999999999999999888888774 468999999999999999999999988765544
No 300
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.35 E-value=0.35 Score=41.03 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=75.8
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCC
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGD 259 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~ 259 (372)
..-|.+.|.+++|+..|.... .+.| ++.++..-..+|.+..++..|..=.... .+. .=...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 346889999999999999888 3455 8888888899999999888776544443 211 112345555666667788
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhH
Q 017414 260 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 297 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 297 (372)
..+|.+-++.++++.|.+. .|-..+.......++
T Consensus 181 ~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI----ELKKSLARINSLRER 214 (536)
T ss_pred HHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhh
Confidence 9999999999999999754 344444444444443
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.34 E-value=0.2 Score=37.50 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=51.5
Q ss_pred HHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 017414 46 LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 125 (372)
Q Consensus 46 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 125 (372)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4556666777777777777777665455566777777777777766666666551 111222345666666666
Q ss_pred HHHHHHHHHhcc
Q 017414 126 IGKALQVFENMK 137 (372)
Q Consensus 126 ~~~A~~~~~~~~ 137 (372)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 666666665543
No 302
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.19 E-value=2.4 Score=30.95 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=10.1
Q ss_pred HHHHHHHcCCchhHHHHHHHH
Q 017414 284 LSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m 304 (372)
|..++.+.++++.+.++.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHH
Confidence 334445555555555554444
No 303
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.07 E-value=6.5 Score=32.99 Aligned_cols=58 Identities=19% Similarity=0.050 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
......|...|.+.+|.++.++++.++|-+...+..|+..++..|+--.|.+-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344578899999999999999999999999999999999999999888888888774
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.05 E-value=0.48 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
+++.|...|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555666666555555554
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.50 E-value=0.55 Score=24.36 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=15.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
+..++...|++++|...|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555566666666666666665553
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.37 E-value=5.3 Score=30.64 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
..+++.+...|++-+|+++.++.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34555666666666666666554
No 307
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.31 E-value=11 Score=33.92 Aligned_cols=115 Identities=7% Similarity=0.079 Sum_probs=54.8
Q ss_pred HHhcCCHHHHHHHHhccCC---CCh------hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHc
Q 017414 19 YAKVGDLNNARALFELMTE---KNV------ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA--CAQ 87 (372)
Q Consensus 19 ~~~~~~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~ 87 (372)
+-+++++.+|.++|.++-+ .++ ..-+-++++|... +.+..........+. .| ...|..+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 4466777777777776654 111 1233444555432 344444444444432 22 2233333333 335
Q ss_pred cCChHHHHHHHHHHHHc--CCCCc------------hhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 88 LGAVELGEWIHNYIEQY--GLNTI------------VPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~--~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
.+++.+|.+.+..-.+. +..+. -..=+..++++...|++.+++.+++++.
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 56666666665544433 11111 1111334455566666666666665554
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.11 E-value=5.1 Score=29.92 Aligned_cols=66 Identities=6% Similarity=0.015 Sum_probs=35.2
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc-chHHHHHHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV-ITWTTMIAGLA 152 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~ 152 (372)
...++.+.+..++..+.-.. |.....-..-...+...|++++|..+|+++.+... ..|..-+.++|
T Consensus 21 L~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34566677777766666532 11222222234456667777777777777765432 24444444443
No 309
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.10 E-value=5.9 Score=31.25 Aligned_cols=99 Identities=8% Similarity=-0.018 Sum_probs=59.3
Q ss_pred hcccCchHHHHHHHHHhHHhcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcC
Q 017414 186 CCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYG 258 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~ 258 (372)
+...|++++|..-|..+.+- +++. ...|..-.-++.+.+.++.|+.-..+. .+.|+- .....-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45667777777777777742 2222 123333445666777777777655444 444422 22223344677778
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHH
Q 017414 259 DVELGECALQHLIKLEPHNSGNYAILSN 286 (372)
Q Consensus 259 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 286 (372)
.++.|+.-|+++.+.+|....+-...++
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 8888888888888888865544444433
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.01 E-value=0.44 Score=25.00 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHh
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQV 68 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 68 (372)
.|..+..++...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555556666666666655554
No 311
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.00 E-value=7 Score=31.32 Aligned_cols=177 Identities=11% Similarity=0.038 Sum_probs=91.3
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcc-hHHHHHH--HHHhcCChhHHHHHHH
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVI-TWTTMIA--GLALHGLGREALDMFS 165 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~a~~~~~ 165 (372)
|-+..|.--|.+..... |.-+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+=. ++.--|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 33444444444444432 334677887877788888888888888887765543 2332222 2334677887777766
Q ss_pred HHHHcCC-CCCHHHHHHHHHHhcccCchHHHHH-HHHHhHHhcCCCcCHHHHHH-HHHHHHhcCCHHHHHHHHhhCCCC-
Q 017414 166 RMERARV-KPNEITFIAILSACCHVGLVELGRR-YFNIMKSRYGIEPKIEQYGC-MIDLLGRAGYLQEAEKLLRRMPFE- 241 (372)
Q Consensus 166 ~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~- 241 (372)
+.-+.+. .|=...|..+.. ..-++.+|.. +.++.. + .+..-|.. ++.-|...=..+.+.+-...-...
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 6665531 222223333322 2334555544 333333 2 23333332 223332222222222222221100
Q ss_pred -----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC
Q 017414 242 -----ANAAIWGSLLAASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 242 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
.-..||-.+..-+...|+.++|..+|+-++..+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 123466667777778888888888888777654
No 312
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.86 E-value=7.6 Score=31.49 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=33.0
Q ss_pred HHHHHHhc-CCHHHHHHHHhhC-----CCCCCHHHHHHHHH---HHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 218 MIDLLGRA-GYLQEAEKLLRRM-----PFEANAAIWGSLLA---ASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 218 li~~~~~~-g~~~~a~~~~~~~-----~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
+...|-.. .++++|+..|++. +-+.+...-..++. --...+++.+|+.+|+++....-++
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444332 4566666666665 22222222222332 3356688999999999988754433
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.66 E-value=2.4 Score=25.35 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 017414 281 YAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEH 356 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~ 356 (372)
...+..++.+.|++++|.+..+.+.+. .|+...+..+-..+.+.|+++|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778999999999999999988653 56666777777777788888874
No 314
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.56 E-value=14 Score=34.20 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=66.6
Q ss_pred ccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHH---HHHhhC-CCCCCHHH----HHHHHH-HHHHc
Q 017414 188 HVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAE---KLLRRM-PFEANAAI----WGSLLA-ASNIY 257 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~---~~~~~~-~~~~~~~~----~~~l~~-~~~~~ 257 (372)
..|++..|..+++.+.++ . |+. ..-..-+....+.|+.+.+. .++... ...-+... +....+ .+...
T Consensus 378 ~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred hhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 457888888888888864 2 443 22223344455677777777 444443 21222222 222233 34456
Q ss_pred CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 258 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
++.+.|..++.++.+..|++...|..++......+.
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 888999999999999999998899999888777653
No 315
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.40 E-value=2.7 Score=28.64 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 017414 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 117 (372)
++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-++... ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 445555666666777888888888888888888888888888776331 22334454443
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.03 E-value=0.16 Score=37.95 Aligned_cols=85 Identities=19% Similarity=0.186 Sum_probs=60.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHH
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 160 (372)
++..+.+.+.++....+++.+...+...+...++.++..|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566677788888888899888776566788889999999999888888888773332 3334556666667777777
Q ss_pred HHHHHHHH
Q 017414 161 LDMFSRME 168 (372)
Q Consensus 161 ~~~~~~~~ 168 (372)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 76666543
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.87 E-value=5 Score=31.71 Aligned_cols=67 Identities=13% Similarity=-0.046 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-------cCCcchHHHHHHHHHhcCChhHH
Q 017414 93 LGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK-------NKSVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 93 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a 160 (372)
.|...|-.+...+.--++.....|+..|. ..+.+++..++.+.. +.|+..+.+|++.+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444544443344444444444444 345555555555433 23455566666666666666555
No 318
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.80 E-value=1.6 Score=36.73 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 017414 56 PNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ 103 (372)
Q Consensus 56 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 103 (372)
+++++.++..=+.-|+-||..+++.++..+.+.+++..|.++...++.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334444444444444445555555555555555555444444444443
No 319
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.77 E-value=0.5 Score=23.28 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHcCCchhHHHHHH
Q 017414 280 NYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777777664
No 320
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=1.2 Score=35.93 Aligned_cols=84 Identities=12% Similarity=-0.009 Sum_probs=46.7
Q ss_pred hcccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHH-hhCCCCCCHHHHHHHH-HHHHHcCChhH
Q 017414 186 CCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLL-RRMPFEANAAIWGSLL-AASNIYGDVEL 262 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~l~-~~~~~~~~~~~ 262 (372)
|.....++.|...|.+.. -+.|++ .-|+.-+.++.+..+++.+..=- ..+.+.||..--..++ .+......++.
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444556666666666665 335555 33445566666666666655432 3335555554433333 34455566677
Q ss_pred HHHHHHHHHH
Q 017414 263 GECALQHLIK 272 (372)
Q Consensus 263 a~~~~~~~~~ 272 (372)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 7777777655
No 321
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.72 E-value=2.5 Score=28.98 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=47.5
Q ss_pred CHHHHHHHHhccCC-CChhhHHH--HHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 017414 24 DLNNARALFELMTE-KNVISWTT--LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNY 100 (372)
Q Consensus 24 ~~~~A~~~~~~~~~-~~~~~~~~--l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 100 (372)
..++|..+-+.+.. ++..-.-. -+..+...|++++|..+.+.+ ..||...|..|. -.+.|-.+....-+..
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 34555555554443 21111122 234566778888887776655 367877775543 3466777777777777
Q ss_pred HHHcCCCCchhHH
Q 017414 101 IEQYGLNTIVPLN 113 (372)
Q Consensus 101 ~~~~~~~~~~~~~ 113 (372)
+...| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 77666 4544444
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.63 E-value=25 Score=35.63 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=47.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCch
Q 017414 218 MIDLLGRAGYLQEAEKLLRRMPFEANAAI--WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 295 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 295 (372)
-+.+|..+|++.+|+.+..++....+... -..|+.-+...+++-+|-+++.+... +| ... +..|++...|+
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d~--~~a----v~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-DP--EEA----VALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-CH--HHH----HHHHhhHhHHH
Confidence 35566667777777777766642333322 25667777777887777777666543 11 122 33445555778
Q ss_pred hHHHHHHHH
Q 017414 296 ESGKIRKVM 304 (372)
Q Consensus 296 ~a~~~~~~m 304 (372)
+|.++-..-
T Consensus 1044 eAlrva~~~ 1052 (1265)
T KOG1920|consen 1044 EALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc
Confidence 887765433
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.57 E-value=7.2 Score=35.15 Aligned_cols=123 Identities=8% Similarity=-0.005 Sum_probs=82.9
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 262 (372)
--...|+.-.|.+-+.....++.-.|+ ........+...|.++.+.+.+... .+.....+...+++...+.|+++.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 334557776665544444433333333 3333444566788999998888776 234556677888888889999999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
|......+....-.++.+...........|-++++.-.+++.....-
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 99988888876666666665555566677888888888888754433
No 324
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.52 E-value=3.5 Score=28.42 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++..- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445555666666777888888888888888888888888888777542 222335554443
No 325
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.37 E-value=7.9 Score=29.40 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=25.0
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 138 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 138 (372)
-.+.++.+.+..++..+.-.. |.....-..-...+...|++.+|..+|+++..
T Consensus 20 al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344455555555555555432 11122222233445555556666666555543
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.21 E-value=0.8 Score=25.32 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQ 67 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~ 67 (372)
+++.|...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45556666666666666666665554
No 327
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.99 E-value=9.1 Score=32.52 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=21.9
Q ss_pred chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 191 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
++++++.++..=. .+|+-||..+...+++.+.+.+++.+|.++...
T Consensus 115 ~pq~~i~~l~npI-qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 115 DPQKAIYTLVNPI-QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred ChHHHHHHHhCcc-hhccccchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 3444444444444 235555555555555555555555554444433
No 328
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.31 E-value=20 Score=32.79 Aligned_cols=175 Identities=8% Similarity=0.046 Sum_probs=84.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 017414 109 IVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 109 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
|.....+++..+...-+++-...+-.+|.. .+...|..++.+|..+ ..+.-..+|+++.+... +......-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHH
Confidence 333344455555555555555555555543 3444555566666555 44555556666555432 222222222222
Q ss_pred cccCchHHHHHHHHHhHHhcCCCcC------HHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHHH
Q 017414 187 CHVGLVELGRRYFNIMKSRYGIEPK------IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAASNI 256 (372)
Q Consensus 187 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~ 256 (372)
...++.+.+..+|.++..+ +-|. ...|..++... ..+.+..+.+..++ +...-...+..+..-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 2335556666666665542 2221 12233333211 23344444444444 222333444445555666
Q ss_pred cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 017414 257 YGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 290 (372)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 290 (372)
..++++|++++..+.+.+..+..+...++..+..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 6677777777777766665555555555554443
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.98 E-value=6.3 Score=31.16 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a 231 (372)
|+..+..|+..|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444443
No 330
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.94 E-value=21 Score=32.54 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=54.9
Q ss_pred CCHHHHH-HHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH---HhcCCHHHHHHHHhhC--CCCCCHHHH
Q 017414 174 PNEITFI-AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL---GRAGYLQEAEKLLRRM--PFEANAAIW 247 (372)
Q Consensus 174 p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~~--~~~~~~~~~ 247 (372)
|+..|+. .+++.+-+.|-..+|..++..+.. --+|+...|..+|+.= ..+| ...+..+|+.+ .+..|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHH
Confidence 3443332 445555566666666666666663 3344555555555432 2233 55566666665 222566666
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH-hCC
Q 017414 248 GSLLAASNIYGDVELGECALQHLIK-LEP 275 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~p 275 (372)
...+.--..+|..+.+-.++.++.+ ++|
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~ktl~~ 562 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMKTLQG 562 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHHhhCh
Confidence 6666666666776666666655554 444
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.63 E-value=1.3 Score=21.76 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 017414 12 WNTMVAGYAKVGDLNNARALFE 33 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~ 33 (372)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445566666666666666654
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.48 E-value=1.4 Score=23.02 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 279 GNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998754
No 333
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.47 E-value=1.2 Score=26.64 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=25.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 249 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
.+.-++.+.|+++.|.+..+.+++..|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45568899999999999999999999988643
No 334
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.31 E-value=13 Score=29.33 Aligned_cols=114 Identities=9% Similarity=-0.031 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHhcccCchHHHHHHHHHhHHhcCCCcCHH----HHHHHHHHHHhcCCHHHHH
Q 017414 159 EALDMFSRMERARVKPNEITFI--AILSACCHVGLVELGRRYFNIMKSRYGIEPKIE----QYGCMIDLLGRAGYLQEAE 232 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~ 232 (372)
+.....+++........-.++. .+...+...|++++|...++..... +.|.. .--.|.+.....|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4555555565543222222222 3345677888899998888877732 22221 1223456677888899998
Q ss_pred HHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 233 KLLRRMP-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 233 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
.+++... -.-.......-...+...|+.++|...|++..+..+
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 8888763 111222233334578888888888888888888764
No 335
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.24 E-value=2.5 Score=36.13 Aligned_cols=93 Identities=16% Similarity=0.067 Sum_probs=63.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 226 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 226 (372)
..-|.+.|.+++|+..|...... .| +.+++..-..+|.+...+..|+.=...+..- -..-+..|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999987775 45 8888888888999999998887766655521 0111233444444444456
Q ss_pred CHHHHHHHHhhC-CCCCCH
Q 017414 227 YLQEAEKLLRRM-PFEANA 244 (372)
Q Consensus 227 ~~~~a~~~~~~~-~~~~~~ 244 (372)
+..+|.+=++.. .++|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 666666666555 566763
No 336
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.22 E-value=24 Score=32.37 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY 104 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 104 (372)
.-+++..+..+.++.-...+..+|..-| -+...|..++.+|... ..+.-..+|+++.+.
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 3344444444444555555555555432 3334444455555444 334444455554444
No 337
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.80 E-value=14 Score=29.16 Aligned_cols=53 Identities=9% Similarity=-0.073 Sum_probs=22.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 149 AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
......|.+|+|+.+++.....+.. ......-.+.+...|+-++|..-|+...
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence 3344445555555554443332211 1112222344444555555555555544
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.80 E-value=1.1 Score=23.23 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 280 NYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
++..++.++.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998653
No 339
>PRK09687 putative lyase; Provisional
Probab=86.34 E-value=19 Score=30.49 Aligned_cols=217 Identities=9% Similarity=0.002 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH----HHHHHHHHhc--ccCCcchHH
Q 017414 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI----GKALQVFENM--KNKSVITWT 145 (372)
Q Consensus 72 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~--~~~~~~~~~ 145 (372)
.+|.......+.++...|..+-... +..+.+ .++...-...+.++...|+. +++...+..+ ..++..+-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~-l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRL-AIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHH-HHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence 3455555555555655554333222 222332 23444444555666666652 4566666654 345555555
Q ss_pred HHHHHHHhcCCh-----hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 146 TMIAGLALHGLG-----REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 146 ~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
..+.++...+.. ..+...+..... .++...-...+.++.+.++ +.+...+-.+.+ .++...-..-+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 555555544321 223333333222 2344444455566666665 344555555543 233344444444
Q ss_pred HHHhcC-CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHH
Q 017414 221 LLGRAG-YLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 299 (372)
Q Consensus 221 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 299 (372)
++.+.+ ....+...+..+-..++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...|.. +|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~--~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG--T--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC--c--hHHHHHHHHHhcCCH-hHHH
Confidence 454432 1334444444442245666666666666666663 3444444443321 1 344566666677664 5666
Q ss_pred HHHHHHh
Q 017414 300 IRKVMRD 306 (372)
Q Consensus 300 ~~~~m~~ 306 (372)
.+..+.+
T Consensus 256 ~L~~l~~ 262 (280)
T PRK09687 256 VLDTLLY 262 (280)
T ss_pred HHHHHHh
Confidence 6666654
No 340
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.14 E-value=7.5 Score=35.99 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=57.8
Q ss_pred ccCchHHHHHHHHHhHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCChhHH
Q 017414 188 HVGLVELGRRYFNIMKSRYGIEPK--IEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELG 263 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a 263 (372)
-.|+...|...+..+.. ..|- ......|.....+.|...+|-.++.+. .+ ...+-++..+.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 34666666666665552 2332 122334555555666666666665543 22 22334556666777777778888
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHH
Q 017414 264 ECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
++.|+.+.++.|+++..-+.|...
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 888888888777777666665443
No 341
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.10 E-value=42 Score=34.07 Aligned_cols=257 Identities=9% Similarity=-0.073 Sum_probs=141.4
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 017414 27 NARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 106 (372)
Q Consensus 27 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 106 (372)
....+...+..+|+......+..+.+.+.. .+...+..+.+ .++...-...+.++.+.+........+..+.+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~-- 695 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS-- 695 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC--
Confidence 334555666678888888888888777754 45555556654 345444445555555443221122233333332
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 017414 107 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 107 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
++..+-...+..+...+..+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-...+.++
T Consensus 696 -~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL 766 (897)
T PRK13800 696 -PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGL 766 (897)
T ss_pred -CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHH
Confidence 45555556666665543221 2345556667777766677777776655432 22222 234555555556666
Q ss_pred cccCchHH-HHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 017414 187 CHVGLVEL-GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGEC 265 (372)
Q Consensus 187 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 265 (372)
...+..+. +...+..+.. .++...-...+.++...|....+...+...-..++..+-...+.++...+.. ++..
T Consensus 767 ~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~ 841 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVP 841 (897)
T ss_pred HHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHH
Confidence 66555432 3344445543 3566677778888888887655544343332245666666677777777653 3444
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 266 ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 266 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
.+-.+.+ +| +..+-...+.++.+.+.-..+...+....
T Consensus 842 ~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 842 ALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4444432 23 45566666667766533345555555443
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.98 E-value=2.2 Score=21.15 Aligned_cols=29 Identities=21% Similarity=0.150 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
|..+...+...|+++.|...++..++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444555555555555555554443
No 343
>PRK10941 hypothetical protein; Provisional
Probab=85.73 E-value=6.6 Score=32.94 Aligned_cols=60 Identities=20% Similarity=0.088 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.+.+-.+|.+.++++.|.++.+.+..+.|+++.-+.--+..|.+.|.+..|..-++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 445556788889999999999999999999988888888899999999999988876644
No 344
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.72 E-value=13 Score=34.62 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=62.1
Q ss_pred HhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 017414 51 AQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 130 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 130 (372)
.+.|+.+.|.++..+. -+..-|..|..+..+.+++..|.+.+...... ..|+-++...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHH
Confidence 3456666665554333 34566888888888889998888888776543 34666666667665444
Q ss_pred HHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 017414 131 QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
.+-...++.. ..|.-.-+|...|+++++.+++.+-
T Consensus 713 ~la~~~~~~g--~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQG--KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhc--ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 4443333221 1223334567788888888887653
No 345
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.16 E-value=3.3 Score=26.97 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=26.5
Q ss_pred ccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHH
Q 017414 188 HVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~ 234 (372)
.....++|+..|..+.++..-+++. .+...++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666542222222 3455566666666666666553
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.96 E-value=21 Score=29.70 Aligned_cols=258 Identities=14% Similarity=0.151 Sum_probs=152.1
Q ss_pred CCccHHHHHHHHHHHH-hcCCHHHHHHHHhccCCC----C---hhhHHHHHHHHHhCCCccHHHHHHHHHHhC---CC--
Q 017414 5 SRLLYKFWNTMVAGYA-KVGDLNNARALFELMTEK----N---VISWTTLIAGYAQMDQPNEAITLFRRMQVE---NV-- 71 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~----~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~-- 71 (372)
+.||+..=|..-..-+ +..+.++|+.-|.++.+. . -.+...++....+.|++++..+.|.+++.- .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 4567666554433322 455889999999988752 2 235667888999999999999999888531 11
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCch----hHHHHHHHHHHhcCCHHHHHHHHHhcccC-------
Q 017414 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIV----PLNNALIDMYAKSGKIGKALQVFENMKNK------- 139 (372)
Q Consensus 72 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 139 (372)
.-+....++++.-...+.+.+....+++.-... .-..+. .+-+.|...|...|.+.+..+++.++.+.
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 223445667776666666666666665543321 001121 23356888899999999988888887631
Q ss_pred -----C---cchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHh-----cccCchHHHHHHHHHhHHh
Q 017414 140 -----S---VITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAILSAC-----CHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 140 -----~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~ 205 (372)
+ ...|..-|..|....+-..-..+|++.+... -.|.+... .+|+-| .+.|.+++|..=|-++-+.
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 1 2477778888888888888888888766432 23444433 344444 4568888886544433322
Q ss_pred c---CCCcCH--HHHHHHHHHHHhcCC--HHHHHHHHhhC-C--CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 017414 206 Y---GIEPKI--EQYGCMIDLLGRAGY--LQEAEKLLRRM-P--FEANAAIWGSLLAASNIYGDVELGECALQH 269 (372)
Q Consensus 206 ~---~~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 269 (372)
+ |-+... --|..|...+.+.|- ++. ++. | ..|.......++.+|.. ++..+-+++++.
T Consensus 261 YDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 261 YDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 2 222111 224445555555541 110 011 2 23445566777777754 444444444443
No 347
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.83 E-value=31 Score=31.44 Aligned_cols=152 Identities=17% Similarity=0.086 Sum_probs=94.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC-CCCC-------HHHHHHHH-HHhcccCchHHHHHHHHHhHHhcCCCcCHH--HHHH
Q 017414 149 AGLALHGLGREALDMFSRMERAR-VKPN-------EITFIAIL-SACCHVGLVELGRRYFNIMKSRYGIEPKIE--QYGC 217 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~-~~p~-------~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~ 217 (372)
.+=.-.|++.+|++-..+|.+-- -.|. ......++ -.|+..|.++.|+.-|..+.+. .-..|.. .-..
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nln 409 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLN 409 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHh
Confidence 33345799999999999998632 1233 11222333 3455778999999998887753 2222322 2234
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH--------HHHH--HHHcCChhHHHHHHHHHHHhCC-C-----CcchH
Q 017414 218 MIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS--------LLAA--SNIYGDVELGECALQHLIKLEP-H-----NSGNY 281 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------l~~~--~~~~~~~~~a~~~~~~~~~~~p-~-----~~~~~ 281 (372)
+.-.|.+.|+-+.-.++++.++ .++..++.. ++.+ ....+++.+|..++++..+... . ..-..
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 5678899999998888888883 122211111 2222 2467999999999999887431 1 22234
Q ss_pred HHHHHHHHHcCCchhHHHHHH
Q 017414 282 AILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 282 ~~l~~~~~~~g~~~~a~~~~~ 302 (372)
..|...+...|+..++.....
T Consensus 489 vLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHhcchHHHHhccc
Confidence 455667777888888776443
No 348
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.83 E-value=21 Score=34.29 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=15.7
Q ss_pred HHhcCCHHHHHHHHhhCCCCC
Q 017414 222 LGRAGYLQEAEKLLRRMPFEA 242 (372)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~ 242 (372)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457899999999999997777
No 349
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.65 E-value=11 Score=26.03 Aligned_cols=85 Identities=16% Similarity=0.222 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 91 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
.++|..+-+.+...+- ....+--+-+..+...|++++|..+.+...-||...|.+|-. .+.|..+.+..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3555555555554331 122222223344566677777777766666666666655533 3555555555555555555
Q ss_pred CCCCCHHHH
Q 017414 171 RVKPNEITF 179 (372)
Q Consensus 171 ~~~p~~~~~ 179 (372)
| .|....|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 4 3444443
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.42 E-value=7.7 Score=34.97 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=82.3
Q ss_pred HHhcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 017414 151 LALHGLGREALD-MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 151 ~~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 229 (372)
-...|+...|-+ ++..+....-.|+.+...+. .....|+++.+.+.+..... -+.....+..++++.....|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHH
Confidence 344566555544 44444444445555544443 35678999999998888774 34455677788899999999999
Q ss_pred HHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 230 EAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 230 ~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
+|..+-+.| +.+ .+..............|-++++...++++..++|+
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 999988887 322 24444444444556678889999999999887765
No 351
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.42 E-value=7.3 Score=28.07 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI 219 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 219 (372)
+..+-++.+...++.|+......-+.+|.+.+++..|.++|+-++.+. .+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 456666777777889999999999999999999999999999998753 34444555554
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.98 E-value=6.4 Score=31.52 Aligned_cols=72 Identities=24% Similarity=0.161 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc---chHHHHHH
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSN 286 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 286 (372)
....++.+.+.+.+.+++...++- .-+| |...-..++..++-.|++++|..-++-+-++.|... ..|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344567778888999998877665 4455 555667788899999999999999999988888643 24444443
No 353
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.55 E-value=27 Score=32.48 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=82.0
Q ss_pred ccCchHHHHHHHHHhHHhcCC----------CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----------CC-------
Q 017414 188 HVGLVELGRRYFNIMKSRYGI----------EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----------PF------- 240 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----------~~------- 240 (372)
.+..+++|.+-|......+.. +-.+.+.-.+...+..+|+.+.|.+++++. .+
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 455678888888777753311 112334445566788888888777766654 11
Q ss_pred -----CC-CHHHHHHH---HHHHHHcCChhHHHHHHHHHHHhCCC-CcchHHHHHHHHH-HcCCchhHHHHHHHHHh
Q 017414 241 -----EA-NAAIWGSL---LAASNIYGDVELGECALQHLIKLEPH-NSGNYAILSNIYA-ILGRWNESGKIRKVMRD 306 (372)
Q Consensus 241 -----~~-~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 306 (372)
.| |...|..| +..+.+.|-+..|.+..+.+..++|. ||.....+++.|+ +..+|+=-+++++..+.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 12 33333333 44667789999999999999999998 8888888888774 77888888888887743
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.29 E-value=45 Score=32.09 Aligned_cols=262 Identities=13% Similarity=0.101 Sum_probs=141.4
Q ss_pred hhhHHHHHHHHH-hCCCccHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHccCChHHHHHHHHHHHHcCCC----Cc
Q 017414 40 VISWTTLIAGYA-QMDQPNEAITLFRRMQVENVKPDEI-----AMLAALSACAQLGAVELGEWIHNYIEQYGLN----TI 109 (372)
Q Consensus 40 ~~~~~~l~~~~~-~~~~~~~A~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~ 109 (372)
..++--+...+. ...+++.|...+++.....-+++-. .-..++..+.+.+... |...++..++.--. +-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 345666666666 6688999999998875543233322 1224456666666555 88888776654211 22
Q ss_pred hhHHHHH-HHHHHhcCCHHHHHHHHHhccc-----CCc--chHHHHHHHH--HhcCChhHHHHHHHHHHHcCC-------
Q 017414 110 VPLNNAL-IDMYAKSGKIGKALQVFENMKN-----KSV--ITWTTMIAGL--ALHGLGREALDMFSRMERARV------- 172 (372)
Q Consensus 110 ~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~------- 172 (372)
...+..+ +..+...++...|.+.++.+.. .+. .++-.++.+. .+.+.++++++.++++.....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2333333 3333344788889988887653 122 2333344333 345667778887777643221
Q ss_pred --CCCHHHHHHHHHHhc--ccCchHHHHHHHHHhHH---hcCCC--------------------------cCHH------
Q 017414 173 --KPNEITFIAILSACC--HVGLVELGRRYFNIMKS---RYGIE--------------------------PKIE------ 213 (372)
Q Consensus 173 --~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~---~~~~~--------------------------~~~~------ 213 (372)
.|...++..+++.++ ..|+++.+...++++.. ...-. +...
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~ 297 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKE 297 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHH
Confidence 234556666666554 55666666555444432 10000 1011
Q ss_pred ---HHHHHHH--HHHhcCCHHHHHHHHhhC-------C----CCCC--------HHHHHHHH---------HHHHHcCCh
Q 017414 214 ---QYGCMID--LLGRAGYLQEAEKLLRRM-------P----FEAN--------AAIWGSLL---------AASNIYGDV 260 (372)
Q Consensus 214 ---~~~~li~--~~~~~g~~~~a~~~~~~~-------~----~~~~--------~~~~~~l~---------~~~~~~~~~ 260 (372)
...-++. ..+..+..++|.+++++. . ..+. ...|...+ ...+..+++
T Consensus 298 ~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~ 377 (608)
T PF10345_consen 298 ELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW 377 (608)
T ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 1111122 223345444555555443 2 0111 11222211 223456889
Q ss_pred hHHHHHHHHHHHhC---CC------CcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 261 ELGECALQHLIKLE---PH------NSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 261 ~~a~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
..+...++.+.+.. |. .+..+...+..+...|+.+.|...|.
T Consensus 378 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 378 SKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 99999999888732 21 24455666666778899999999997
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.09 E-value=2.8 Score=23.91 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 282 AILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 282 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
..|..+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457889999999999999999887543
No 356
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.93 E-value=15 Score=27.47 Aligned_cols=81 Identities=7% Similarity=0.092 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCchhHHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVEN-----VKPDEIAMLAALSACAQLGA-VELGEWIHNYIEQYGLNTIVPLNNAL 116 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (372)
.|.++.-....+++...+.+++.+.... -..+...|.+++.+..+... --.+..+|..+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555543210 02344566777776655554 34455566666666666777777777
Q ss_pred HHHHHhc
Q 017414 117 IDMYAKS 123 (372)
Q Consensus 117 ~~~~~~~ 123 (372)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766554
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.57 E-value=3.7 Score=23.39 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=11.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 017414 147 MIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
No 358
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.50 E-value=35 Score=30.25 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=49.8
Q ss_pred CHHHHHHH---HHHHHHcCChhHHHHHHHHHHHhCCC-CcchHHHHHHHH-HHcCCchhHHHHHHHHHh
Q 017414 243 NAAIWGSL---LAASNIYGDVELGECALQHLIKLEPH-NSGNYAILSNIY-AILGRWNESGKIRKVMRD 306 (372)
Q Consensus 243 ~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~ 306 (372)
|...|.++ +..+.+.|-+..|.++.+-+..++|. ||......|+.| .+.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445444 45778889999999999999999998 887777777776 478888888888887654
No 359
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.16 E-value=22 Score=29.17 Aligned_cols=88 Identities=11% Similarity=-0.037 Sum_probs=61.2
Q ss_pred HHHHHhcCCHHHHHHHHhhC---------CCCCCHH-----------HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 219 IDLLGRAGYLQEAEKLLRRM---------PFEANAA-----------IWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~---------~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
..-+.+.|++.+|...|.+. .-+|..+ .+..+..++...|++-++++....++...|.+.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 33455667776666655543 2234322 333444566677888889999999999999998
Q ss_pred chHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 279 GNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.+|..-+.+.+..=+.++|..-|.....
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 8998888888888777888877776644
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.95 E-value=12 Score=31.41 Aligned_cols=57 Identities=21% Similarity=0.175 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 017414 44 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 101 (372)
Q Consensus 44 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 101 (372)
+...+.|..+|.+.+|.++.++.+... +.+...+..+++.+...||--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 333455666666666666666665542 345555556666666666654444444443
No 361
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=81.74 E-value=13 Score=24.86 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHH
Q 017414 94 GEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 94 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 161 (372)
+.+++....+.|+ .+......+-.+-...|+.+.|.+++..+. ..+..|..+++++...|..+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3445666666652 233333333322235577888888888888 77778888888887777655543
No 362
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=81.63 E-value=16 Score=26.64 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH--hCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 262 LGECALQHLIK--LEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 262 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
.+..+|+.|.. ++...+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888877 4456677888888888889999999888864
No 363
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.59 E-value=23 Score=27.57 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 260 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
+++|...|+++.+.+|.+. .|..-+... .+|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 4667777777788889765 777666655 3577777777776654
No 364
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.92 E-value=52 Score=31.22 Aligned_cols=269 Identities=11% Similarity=0.014 Sum_probs=140.0
Q ss_pred HHHHHHHHhccCCC-ChhhHHHHHHH-----HHhCCCccHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHccC--
Q 017414 25 LNNARALFELMTEK-NVISWTTLIAG-----YAQMDQPNEAITLFRRMQV-------ENVKPDEIAMLAALSACAQLG-- 89 (372)
Q Consensus 25 ~~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 89 (372)
...|.+.++...+. +...-..+..+ +....+.+.|+..|..+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777766653 33333333322 3345678888888888866 44 2224455666665543
Q ss_pred ---ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc---CCHHHHHHHHHhcccC-CcchHHHHHHHHH----hcCChh
Q 017414 90 ---AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS---GKIGKALQVFENMKNK-SVITWTTMIAGLA----LHGLGR 158 (372)
Q Consensus 90 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~ 158 (372)
+.+.|..++....+.| .|+.... +..+|... .+...|.++|....+. ...++-.+...|. -..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 5677888888888877 4554443 33333322 3567888888877654 3333333333332 234678
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH---Hh----cCCHHHH
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL---GR----AGYLQEA 231 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~----~g~~~~a 231 (372)
.|..++.+..+.| .|...--...+..+.. +..+.+.-.+..+.+- +.+.....-..+.... .. ..+.+.+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 8888888888877 3332222223333333 6666666555555532 3322111111111111 11 1245556
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH----cCCchhHHHHHHH
Q 017414 232 EKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHNSGNYAILSNIYAI----LGRWNESGKIRKV 303 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 303 (372)
...+.+....-+......+...|.. ..+++.+...+..+.... ......++..+-. .. +..|.++++.
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~ 534 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHH
Confidence 6666665333344444444443322 234666766666666554 3344444444432 22 5666666665
Q ss_pred HHh
Q 017414 304 MRD 306 (372)
Q Consensus 304 m~~ 306 (372)
...
T Consensus 535 ~~~ 537 (552)
T KOG1550|consen 535 ASE 537 (552)
T ss_pred HHh
Confidence 544
No 365
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.64 E-value=14 Score=29.94 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCChhHHH-------HHHHHHHHhC--CC----CcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 246 IWGSLLAASNIYGDVELGE-------CALQHLIKLE--PH----NSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~-------~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
.+..+...|...|+.+... ..|.++.+.. |. .......++....+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4455555666666644443 4444444322 21 12455667788888899998888888875543
No 366
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.25 E-value=58 Score=31.35 Aligned_cols=178 Identities=12% Similarity=0.039 Sum_probs=93.8
Q ss_pred HHHHHHHHH-HcCCCCc--hhHHHHHHHHHH-hcCCHHHHHHHHHhccc----CCc-----chHHHHHHHHHhcCChhHH
Q 017414 94 GEWIHNYIE-QYGLNTI--VPLNNALIDMYA-KSGKIGKALQVFENMKN----KSV-----ITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 94 a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~----~~~-----~~~~~l~~~~~~~~~~~~a 160 (372)
|++.++.+. +..++|. ..++-.++..+. ...+++.|+..+++... ++. .....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 344455555 2233332 334455566555 56778888887776531 211 12334555666666555 7
Q ss_pred HHHHHHHHHcC----CCCCHHHHHHH-HHHhcccCchHHHHHHHHHhHHhcC--CCcCHHHHHHHHHHHH--hcCCHHHH
Q 017414 161 LDMFSRMERAR----VKPNEITFIAI-LSACCHVGLVELGRRYFNIMKSRYG--IEPKIEQYGCMIDLLG--RAGYLQEA 231 (372)
Q Consensus 161 ~~~~~~~~~~~----~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~--~~g~~~~a 231 (372)
...+++..+.- ..+-...|..+ +..+...+++..|.+.++.+..... ..|...++..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 77777765431 11222333333 2233333788888888887775432 2333444444444433 44555666
Q ss_pred HHHHhhC-----C-------CCCCHHHHHHHHHHH--HHcCChhHHHHHHHHHHH
Q 017414 232 EKLLRRM-----P-------FEANAAIWGSLLAAS--NIYGDVELGECALQHLIK 272 (372)
Q Consensus 232 ~~~~~~~-----~-------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 272 (372)
.+.++++ + ..|...+|..++..+ ...|+++.+...++.+.+
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6555544 1 123455666666644 455776677766666544
No 367
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.85 E-value=28 Score=29.24 Aligned_cols=19 Identities=5% Similarity=-0.279 Sum_probs=8.7
Q ss_pred HhcccCchHHHHHHHHHhH
Q 017414 185 ACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~ 203 (372)
.|.+.+.+..+.++-..-.
T Consensus 127 LysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 3445555544444444433
No 368
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.62 E-value=44 Score=32.33 Aligned_cols=184 Identities=14% Similarity=0.122 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHcCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhccc-CCc----------chHHHHHHHHHhcCCh
Q 017414 92 ELGEWIHNYIEQYGLNT---IVPLNNALIDMYAKSGKIGKALQVFENMKN-KSV----------ITWTTMIAGLALHGLG 157 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------~~~~~l~~~~~~~~~~ 157 (372)
++-..++.+|.+.=-.| ...+...++-.|....+++...++.+.+++ ||. ..|.-.+.---+.|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 44555677777652233 345666788889999999999999988875 321 1233233333456778
Q ss_pred hHHHHHHHHHHHc--CCCCCHHH-----HHHH--HHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC-
Q 017414 158 REALDMFSRMERA--RVKPNEIT-----FIAI--LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY- 227 (372)
Q Consensus 158 ~~a~~~~~~~~~~--~~~p~~~~-----~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 227 (372)
++|+...-.+.+. .+.||..+ |.-+ -+.|...+..+.|.++|++.- .+.|+..+=..+...+...|.
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhh
Confidence 8888887777654 35676533 3222 234555677888899998877 456655432222222222222
Q ss_pred HHHHHHH------HhhC-CCCCCHH---HH---HHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 228 LQEAEKL------LRRM-PFEANAA---IW---GSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 228 ~~~a~~~------~~~~-~~~~~~~---~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
++.-.++ +..+ +.+-... .| ...+.+-.-.+++.+|.+..+.|.++.|+..
T Consensus 337 Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 337 FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 2211111 1111 2121111 11 2234455567899999999999999887643
No 369
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.87 E-value=34 Score=27.95 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=42.2
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHH----HHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHH---HHH-HHH--H
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQ----YGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWGS---LLA-ASN--I 256 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~---l~~-~~~--~ 256 (372)
.++++|+..|+..-+-+.......+ +.-+..--+..+++.+|+++|++. ....+..-|.. ++. +++ .
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4556666666655543222222111 122223334567778888888776 22222222211 221 122 2
Q ss_pred cCChhHHHHHHHHHHHhCCC
Q 017414 257 YGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~p~ 276 (372)
..+.-.+...+++..+++|.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPA 227 (288)
T ss_pred cccHHHHHHHHHHHHhcCCc
Confidence 25555666777777777775
No 370
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.83 E-value=5.2 Score=20.26 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 258 GDVELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
|+.+.+..+|+++....|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467788889999888888777777766543
No 371
>PRK12798 chemotaxis protein; Reviewed
Probab=78.04 E-value=51 Score=29.50 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=116.3
Q ss_pred cCCHHHHHHHHHhcccC----CcchHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcccCchH
Q 017414 123 SGKIGKALQVFENMKNK----SVITWTTMIAGL-ALHGLGREALDMFSRMERARVKPNE----ITFIAILSACCHVGLVE 193 (372)
Q Consensus 123 ~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~ 193 (372)
.|+..+|.+.+..+... ....|-.|+.+- ....++..|+++|+...-. -|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68999999999988743 445677776654 4566799999999987654 3432 34444455667889999
Q ss_pred HHHHHHHHhHHhcCCCcCHHHH-HHHHHHHHh---cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 017414 194 LGRRYFNIMKSRYGIEPKIEQY-GCMIDLLGR---AGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQH 269 (372)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 269 (372)
++..+-.....++.-.|-..-| ..+...+.+ ....+....++..|.-.--...|..+.+.-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9888777777665555543332 223333333 334556666677764233456888888899999999999999999
Q ss_pred HHHhCCCCcchHHHHHHHHH-----HcCCchhHHHHHHHHH
Q 017414 270 LIKLEPHNSGNYAILSNIYA-----ILGRWNESGKIRKVMR 305 (372)
Q Consensus 270 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~ 305 (372)
+..+...+. .-...+..|. -..+++++.+.+..+-
T Consensus 283 A~~L~~~~~-~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADPDS-ADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccCCC-cchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 988663322 2222333332 3455666666665553
No 372
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.97 E-value=76 Score=31.42 Aligned_cols=194 Identities=12% Similarity=0.105 Sum_probs=106.3
Q ss_pred HHHHhcCCHHHHHHHHHhccc----CCc-------chHHHHHH-HHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHH
Q 017414 118 DMYAKSGKIGKALQVFENMKN----KSV-------ITWTTMIA-GLALHGLGREALDMFSRMERA----RVKPNEITFIA 181 (372)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~~~~----~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~ 181 (372)
.......++++|..++.++.. ++. ..|+++-. .....|+++.|.++.+..... -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 344567788888888876542 222 13444432 334578889998888877654 12233455556
Q ss_pred HHHHhcccCchHHHHHHHHHhHHhcCCCcCHHH---HHHH--HHHHHhcCCHH--HHHHHHhhC-----CCCC----CHH
Q 017414 182 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ---YGCM--IDLLGRAGYLQ--EAEKLLRRM-----PFEA----NAA 245 (372)
Q Consensus 182 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l--i~~~~~~g~~~--~a~~~~~~~-----~~~~----~~~ 245 (372)
+..+..-.|++++|..+..+..+. .-.-+... |..+ ...+...|+.. +....|... +-+| -..
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 666777789999998877766532 11223222 2222 23445667332 223333322 1122 223
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHh----CCCCcc---hHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCce
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIKL----EPHNSG---NYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGC 315 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 315 (372)
+...+..++.+ .+.+..-...-.+. .|.... .+..|+.+....|+.++|...++++......+.+..
T Consensus 582 ~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 582 IRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred HHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 33444444444 44444444444332 232211 223678888889999999999998877655544333
No 373
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.92 E-value=8.9 Score=29.72 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC
Q 017414 260 VELGECALQHLIKLEPHNSGNYAILSNIYAILG 292 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 292 (372)
+++|+.-|++++.++|+...++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 355777778888899998889999998887643
No 374
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.85 E-value=40 Score=28.22 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=74.9
Q ss_pred hcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHccCCh-----
Q 017414 21 KVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLF----RRMQVENVKPDEIAMLAALSACAQLGAV----- 91 (372)
Q Consensus 21 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~l~~~~~~~~~~----- 91 (372)
+++++++|++++.. -...+.+.|+...|-++- +-..+.+.+++......++..+...+.-
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 46677777777633 223344555554443332 2233345556665555555555443321
Q ss_pred HHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 92 ELGEWIHNYIEQYGLN--TIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
+-..+....- +.+-. -++..+..+...|.+.|++.+|+..|-.-..++...+..++......|...++
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------- 140 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------- 140 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H---------
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch---------
Confidence 1122222222 22222 35778888999999999999998887655444333332333333333332222
Q ss_pred cCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 170 ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 170 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
+...-.+++ -|...++...|...+....++
T Consensus 141 -----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 -----DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222222233 345567777777777666543
No 375
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.82 E-value=42 Score=28.22 Aligned_cols=23 Identities=13% Similarity=-0.044 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhc
Q 017414 12 WNTMVAGYAKVGDLNNARALFEL 34 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~ 34 (372)
...-.+.+.-..|+..|++.-++
T Consensus 38 Le~Aad~LvV~rdF~aal~tCer 60 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCER 60 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556777777666554
No 376
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.78 E-value=2.1 Score=36.52 Aligned_cols=88 Identities=13% Similarity=0.200 Sum_probs=49.6
Q ss_pred hcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 224 RAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 224 ~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
..|.++.|++.|... ...| ....|..-.+++.++++...|++-+..+.+++|+...-|-.-..+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 345566666655554 3333 22333444445556666666666666666666666555655555666666666666666
Q ss_pred HHHHhCCCcc
Q 017414 302 KVMRDMGVKK 311 (372)
Q Consensus 302 ~~m~~~g~~~ 311 (372)
......++.+
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 6665555543
No 377
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.12 E-value=18 Score=28.66 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 239 PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
...|++.+|..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567777777777777777777777777777777776
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.11 E-value=52 Score=28.59 Aligned_cols=127 Identities=7% Similarity=-0.021 Sum_probs=81.2
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH---cCCchhHHHHHHH
Q 017414 229 QEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI---LGRWNESGKIRKV 303 (372)
Q Consensus 229 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~ 303 (372)
+.-+.++++. ...| +...+..++..+.+..+.+...+-++++....|.++..|...+..... .-.++....+|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4445566665 2244 566778888888888899999999999999999999898888776655 3346677777766
Q ss_pred HHhCCCccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCccccccccccc
Q 017414 304 MRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLE 366 (372)
Q Consensus 304 m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~~ 366 (372)
....=.....+. .........--..++.++-++...+...|+..-.+...|.
T Consensus 128 ~l~~L~~~~~~~-----------~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa 179 (321)
T PF08424_consen 128 CLRALSRRRSGR-----------MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQA 179 (321)
T ss_pred HHHHHHHhhccc-----------cccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHH
Confidence 543211000000 0001111223455666777888888999987666555443
No 379
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=75.44 E-value=52 Score=28.24 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc--cC----chHHHHHHHHHhHHhcCCCc--CHHHHHHHHHHHHhcCCH
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCH--VG----LVELGRRYFNIMKSRYGIEP--KIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~ 228 (372)
+++.+.+++.|.+.|..-+..+|.+....... .. ...+|..+|+.|++.+.+-- +..++..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677888888877776666543222222 22 34567788888887654422 22333333322 33332
Q ss_pred ----HHHHHHHhhC---CCCC--CHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHhCC-CCcchHHHHHHHHHHcCCchh
Q 017414 229 ----QEAEKLLRRM---PFEA--NAAIWGSLLAASNIYGD--VELGECALQHLIKLEP-HNSGNYAILSNIYAILGRWNE 296 (372)
Q Consensus 229 ----~~a~~~~~~~---~~~~--~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~ 296 (372)
+.+..+|+.+ ++.. +......++..+..... ..++..+++.+.+.+. .....|..++-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3344455544 3333 22333333333322222 3466667777766442 233345555444333333324
Q ss_pred HHHHHHH
Q 017414 297 SGKIRKV 303 (372)
Q Consensus 297 a~~~~~~ 303 (372)
..+.+.+
T Consensus 236 ~~~~i~e 242 (297)
T PF13170_consen 236 IVEEIKE 242 (297)
T ss_pred HHHHHHH
Confidence 4443333
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.01 E-value=16 Score=33.97 Aligned_cols=84 Identities=14% Similarity=0.053 Sum_probs=67.4
Q ss_pred hcCCHHHHHHHHhhC-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHH
Q 017414 224 RAGYLQEAEKLLRRM-PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI 300 (372)
Q Consensus 224 ~~g~~~~a~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 300 (372)
-.|+...|..++... ...| ..+....|.+.....|-...|..++.+.+.+.-..|-++..++.++....+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 368889999988776 3344 2234555777777888888999999999998877788999999999999999999999
Q ss_pred HHHHHhC
Q 017414 301 RKVMRDM 307 (372)
Q Consensus 301 ~~~m~~~ 307 (372)
|+...+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 9877554
No 381
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.95 E-value=86 Score=30.55 Aligned_cols=27 Identities=15% Similarity=0.296 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 280 NYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.-..|+..|...+++..|.+++-..++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccC
Confidence 444577888888888888877655543
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.84 E-value=17 Score=28.81 Aligned_cols=51 Identities=20% Similarity=0.106 Sum_probs=30.8
Q ss_pred ccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 188 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
...+.+......+.+.+-....|++.+|..++.++...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444333333333333344677777777777777777777777777766
No 383
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.77 E-value=11 Score=25.57 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=20.7
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 267 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 267 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
++...+.+|.+......+...+...|++++|.+.+-.+.
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444556555556666666666666666666554443
No 384
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.70 E-value=24 Score=26.01 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=48.7
Q ss_pred CcCHHHHHHHHHHHHhcCC---HHHHHHHHhhC-C-CCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc
Q 017414 209 EPKIEQYGCMIDLLGRAGY---LQEAEKLLRRM-P-FEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 279 (372)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~-~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 279 (372)
.++..+--.+..++.+..+ ..+.+.+++.+ + -.|+ ..-...|.-++.+.++++.+.++++.+.+..|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 5566666667777776655 44556677766 2 2332 233344555888999999999999999999997764
No 385
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=74.14 E-value=27 Score=24.45 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
..++|..+.+.+...+. -...+--+-+..+.+.|++++|+..=.....||...|.+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34556556665555442 122222223344555555555533333333345555444322 345555555555554444
Q ss_pred c
Q 017414 170 A 170 (372)
Q Consensus 170 ~ 170 (372)
.
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 3
No 386
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=74.12 E-value=68 Score=29.01 Aligned_cols=101 Identities=14% Similarity=0.016 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEE
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHE 326 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~ 326 (372)
...|+.-|...|+..+|.+.++++---.-++..++..++.+..+.|+-...+.++++.-..|+- .++.....
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI--------T~nQMtkG 583 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI--------TTNQMTKG 583 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce--------eHHHhhhh
Confidence 4567778888899999888877664433346678889999999999988888888888777763 22322222
Q ss_pred EEeCCCC----CCChHHHHHHHHHHHHHHHHcC
Q 017414 327 FVAGDTS----HPDFDRLYQILCKINGQMKFAE 355 (372)
Q Consensus 327 ~~~~~~~----~~~~~~~~~~~~~~~~~m~~~g 355 (372)
|-.-+.+ .-+...+++.+++..+.-+..|
T Consensus 584 f~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 584 FERVYDSLPDLSLDVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred hhhhhccCcccccCCCcHHHHHHHHHHHHHHcC
Confidence 2222222 2234455666666666666777
No 387
>PRK10941 hypothetical protein; Provisional
Probab=73.96 E-value=25 Score=29.62 Aligned_cols=66 Identities=8% Similarity=-0.028 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
+.+-.+|.+.++++.|+.+.+.+ .+.|+ +.-+.--.-.|.+.|.+..|..-++...+..|.++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 44666788899999999999888 55554 44466666678899999999999999999888877543
No 388
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.80 E-value=83 Score=29.86 Aligned_cols=177 Identities=9% Similarity=-0.008 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHH--H-HHhcCCHHHHHHHHHhccc--------CCcchHHHHHHHHHhcC----
Q 017414 91 VELGEWIHNYIEQYGLNTIVPLNNALID--M-YAKSGKIGKALQVFENMKN--------KSVITWTTMIAGLALHG---- 155 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~---- 155 (372)
...+..+++...+.| .........++. + +....+.+.|+.+|+...+ -...+..-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g-~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhc-chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 456777888777766 222222222222 2 4456788888888887644 13456666777777643
Q ss_pred -ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc-cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHH----hcCCHH
Q 017414 156 -LGREALDMFSRMERARVKPNEITFIAILSACCH-VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG----RAGYLQ 229 (372)
Q Consensus 156 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~ 229 (372)
+.+.|+.++.+.-+.| .|+...+...+..... ..+...|.++|..+... |..+ .+..+..+|. ...+..
T Consensus 307 ~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~---A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHIL---AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChH---HHHHHHHHHHhCCCcCCCHH
Confidence 5677888888888876 3455544433333222 34678899999888854 4322 2222332222 334678
Q ss_pred HHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC
Q 017414 230 EAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 230 ~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
.|..++++. ...|....-...+..+.. +.++.+.-.+..+.+.+
T Consensus 382 ~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 888888877 112332222223333333 66666666666665544
No 389
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.21 E-value=91 Score=30.05 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCC-------ccHHHHHHHHHHhCC
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQ-------PNEAITLFRRMQVEN 70 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~m~~~~ 70 (372)
..+|. +|-.|.|.|++++|.++...... .....+-..+..|....+ -++...-|++..+..
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 34454 66778899999999998844332 344556666676666422 235555666665543
No 390
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.53 E-value=71 Score=29.32 Aligned_cols=104 Identities=16% Similarity=0.074 Sum_probs=72.4
Q ss_pred HHHHhcCCHHHHHHHHHhcc---cC---------CcchHHHHHHHHHhcCChhHHHHHHHHHHH-------cCCCCC---
Q 017414 118 DMYAKSGKIGKALQVFENMK---NK---------SVITWTTMIAGLALHGLGREALDMFSRMER-------ARVKPN--- 175 (372)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~p~--- 175 (372)
..+.-.|++.+|.+++.... .+ .-..||.|...+.+.|.+.-+..+|.+.++ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 44566799999999887543 11 123467777777778887777777766653 455543
Q ss_pred --------HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHh
Q 017414 176 --------EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 224 (372)
Q Consensus 176 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 224 (372)
..+||.=+ .|...|++-.|.+.|.+... -+..++..|-.|..+|..
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHH
Confidence 24555433 56788999999999999986 445677888888888753
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=72.52 E-value=29 Score=24.49 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
-|..|+..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777777788888888888877766
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.34 E-value=72 Score=28.52 Aligned_cols=53 Identities=9% Similarity=-0.050 Sum_probs=31.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhc--ccCchHHHHHHHHHhHH
Q 017414 151 LALHGLGREALDMFSRMERARVKPNEI--TFIAILSACC--HVGLVELGRRYFNIMKS 204 (372)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 204 (372)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44677777777777777765 444433 2333333332 45566777777776664
No 393
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.78 E-value=66 Score=27.79 Aligned_cols=94 Identities=10% Similarity=0.093 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHh---cCCCcCHHHHHHHHHH-HH----hcCCHHHHHHHHhhCC---CCCCHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSR---YGIEPKIEQYGCMIDL-LG----RAGYLQEAEKLLRRMP---FEANAA 245 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~-~~----~~g~~~~a~~~~~~~~---~~~~~~ 245 (372)
.........||+.|+-+.|.+.+....++ .|.+.|+..+..-+.. |. -...+++|..++++-+ .+.-..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 45556667788888888887777665432 2445555444332221 22 2334666677777663 122233
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
+|..+-. ....++.+|-.+|-....
T Consensus 185 vY~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHcc
Confidence 4443332 233566666666555544
No 394
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.73 E-value=12 Score=24.45 Aligned_cols=46 Identities=9% Similarity=-0.011 Sum_probs=30.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcccCchHHHHHH
Q 017414 153 LHGLGREALDMFSRMERARVKPN--EITFIAILSACCHVGLVELGRRY 198 (372)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~ 198 (372)
...+.++|+..|...++.-..|. -.++..++.+|+..|.+.++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776533332 24566777788888877776654
No 395
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.66 E-value=79 Score=28.24 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC------CChhhHHHHHHHHHhCCCccHHHHHHHHHHh
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTE------KNVISWTTLIAGYAQMDQPNEAITLFRRMQV 68 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 68 (372)
+.-+.+.|...|+++.|++.+.+.+. ..+..|-.+|..-...|+|.....+-.+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 44455556666666666666665443 1223344455555555555555555544443
No 396
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=70.35 E-value=71 Score=27.62 Aligned_cols=53 Identities=6% Similarity=0.118 Sum_probs=29.8
Q ss_pred hcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 186 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
..+.|+..+|.+.++.+.++..+..-......|+.++....-+.++..++-+.
T Consensus 285 ARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567777777777777654322212233455666666666555555554443
No 397
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.04 E-value=42 Score=24.41 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=20.2
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 98 HNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
++.+....+.|++.+...-++++.+.+++..|..+|+.++
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333344445555555555555555555555555555444
No 398
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.83 E-value=35 Score=24.07 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHh
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQV 68 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 68 (372)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477777777777777777777777655
No 399
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.72 E-value=76 Score=26.92 Aligned_cols=114 Identities=8% Similarity=0.061 Sum_probs=70.6
Q ss_pred CHHHHHHHHHhccc-----CCcchHHHHHHHHHh-cCC-hhHHHHHHHHHHH-cCCCCCHHHHHHHHHHhcccCchHHHH
Q 017414 125 KIGKALQVFENMKN-----KSVITWTTMIAGLAL-HGL-GREALDMFSRMER-ARVKPNEITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 125 ~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~ 196 (372)
.+.+|+.+|+.... .|..+-..++..... .+. ...-.++.+-+.. .+..++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 45677777773322 244555555555554 221 1111222222222 234566677777888888888888888
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
++|+......+...|...|..+|+.....|+..-...+..+-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 888877753345557778888888888888888887777765
No 400
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=67.72 E-value=99 Score=28.86 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcc
Q 017414 115 ALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 115 ~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
.|+.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46667777788888887777775
No 401
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=67.70 E-value=4 Score=36.62 Aligned_cols=95 Identities=9% Similarity=0.051 Sum_probs=67.3
Q ss_pred HHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcC
Q 017414 182 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG-CMIDLLGRAGYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYG 258 (372)
Q Consensus 182 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~ 258 (372)
-+......+.++.|..++.++. .+.|+...|- .-..++.+.+++..|+.=+... ...|+. ..|..=..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 4556677789999999999999 4577654443 3347888888888877644444 545543 23444445677778
Q ss_pred ChhHHHHHHHHHHHhCCCCcc
Q 017414 259 DVELGECALQHLIKLEPHNSG 279 (372)
Q Consensus 259 ~~~~a~~~~~~~~~~~p~~~~ 279 (372)
.+.+|...|+....+.|+++.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHH
Confidence 889999999999999998774
No 402
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=67.28 E-value=70 Score=26.35 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHH
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ-LGAVELGEWIHNYIE 102 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 102 (372)
-++..+-+.|+++++...+.++...+...+..-.+.+..+|-. .|....+.+++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3566677888888888888888887766777666666655532 234445555555444
No 403
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.23 E-value=37 Score=30.43 Aligned_cols=56 Identities=21% Similarity=0.199 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc--C---------CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKN--K---------SVITWTTMIAGLALHGLGREALDMFSRME 168 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 168 (372)
...|++.++-.|++..|+++++.+.- . .+.++--+.-+|...+++.+|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999987652 1 34677888999999999999999998865
No 404
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.00 E-value=67 Score=26.05 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc----CHHHHHHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP----KIEQYGCM 218 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l 218 (372)
+.+.-++.+.+.+..++++...++-.+.+ +.|..+-..++..+|-.|++++|...++.+. .+.| ...+|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 34556778888999999999888877763 3355566678888999999999988887766 2333 34555555
Q ss_pred HHH
Q 017414 219 IDL 221 (372)
Q Consensus 219 i~~ 221 (372)
|++
T Consensus 79 ir~ 81 (273)
T COG4455 79 IRC 81 (273)
T ss_pred HHH
Confidence 543
No 405
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=66.73 E-value=1.6e+02 Score=30.19 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=28.6
Q ss_pred cccCCccHHHH------HHHHHHHHhcCCHHHHHHHHhccC-------CCChhhHHHHHHHHHhC
Q 017414 2 FTLSRLLYKFW------NTMVAGYAKVGDLNNARALFELMT-------EKNVISWTTLIAGYAQM 53 (372)
Q Consensus 2 ~~~~~~~~~~~------~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~ 53 (372)
+++|+.|..+- -..+.-+...+++.+|..+.++=+ +.|+..|-.=+..+.++
T Consensus 681 LQmPRGNLEtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~q 745 (928)
T PF04762_consen 681 LQMPRGNLETIYPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQ 745 (928)
T ss_pred EEcCCCchhhhccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHh
Confidence 45666665542 234555666788888877765533 23444444444444443
No 406
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=66.72 E-value=13 Score=19.51 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHcCcccccccc
Q 017414 337 FDRLYQILCKINGQMKFAEHLQNEFSG 363 (372)
Q Consensus 337 ~~~~~~~~~~~~~~m~~~g~~p~~~~~ 363 (372)
.++..++..++...+.+.|-.|+.+++
T Consensus 7 ~~~~~d~a~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 7 KEEYLDMASRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeeeC
Confidence 567788889999999999999998763
No 407
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.98 E-value=1.5e+02 Score=29.58 Aligned_cols=216 Identities=13% Similarity=0.055 Sum_probs=119.7
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchh-------HHHHHH-HHHHhcCCHHHHHHHHHhccc--------CCcchHHHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVP-------LNNALI-DMYAKSGKIGKALQVFENMKN--------KSVITWTTMI 148 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~ 148 (372)
.....++++|..++.++...-..|+.. .++.|- ......|++++|.++.+.... .....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 346678999999998887543233221 233322 223456888999888776543 2456778888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-----HHHhcccCchHHH--HHHHHHhHHhcCCC-----cCHHHHH
Q 017414 149 AGLALHGLGREALDMFSRMERARVKPNEITFIAI-----LSACCHVGLVELG--RRYFNIMKSRYGIE-----PKIEQYG 216 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~~~~~~~a--~~~~~~~~~~~~~~-----~~~~~~~ 216 (372)
.+..-.|++++|..+..+..+..-.-+...+... ...+...|....+ ...|......+.-. +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888999999999998877654222233333222 2334556633332 33333333221111 1123444
Q ss_pred HHHHHHHhcCCHHHHHHHHhh----C-CCCCCH--H--HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC-cchH-H---
Q 017414 217 CMIDLLGRAGYLQEAEKLLRR----M-PFEANA--A--IWGSLLAASNIYGDVELGECALQHLIKLEPHN-SGNY-A--- 282 (372)
Q Consensus 217 ~li~~~~~~g~~~~a~~~~~~----~-~~~~~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~-~--- 282 (372)
.+..++.+ ++.+..-... . ...|.. . .+..|+......|+.+.|...++++..+.... +.++ .
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 45555555 3333332222 1 112222 1 22356778889999999999999998843211 2222 1
Q ss_pred HH--HHHHHHcCCchhHHHHHHH
Q 017414 283 IL--SNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 283 ~l--~~~~~~~g~~~~a~~~~~~ 303 (372)
.. ...-..+|+...+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 12 2223457888888776655
No 408
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.97 E-value=13 Score=23.11 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 017414 145 TTMIAGLALHGLGREALDMFSRME 168 (372)
Q Consensus 145 ~~l~~~~~~~~~~~~a~~~~~~~~ 168 (372)
-..|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555443
No 409
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.73 E-value=7.9 Score=28.26 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=12.2
Q ss_pred CCCccHHHHHHHHHHhCCCCCC
Q 017414 53 MDQPNEAITLFRRMQVENVKPD 74 (372)
Q Consensus 53 ~~~~~~A~~~~~~m~~~~~~p~ 74 (372)
.|.-..|-.+|.+|++.|-+||
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc
Confidence 3444555556666666655554
No 410
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=65.04 E-value=1.2e+02 Score=28.09 Aligned_cols=238 Identities=10% Similarity=0.052 Sum_probs=132.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC------ChHHHHHHHHHHHHcC-CCC-chhHHHHHHHHHHhcCCHHH-
Q 017414 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLG------AVELGEWIHNYIEQYG-LNT-IVPLNNALIDMYAKSGKIGK- 128 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~- 128 (372)
...++|+...+ .-|+...|...|..|...- .+.....+++...+.+ ..+ ....|..+.-.+.......+
T Consensus 300 ~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 44566666665 2466667766666664432 2334444555554432 222 34555556555555554333
Q ss_pred HHHHHHhcccCCcchHHHHHHHHHhcC-ChhHH-HHHHHHHHHcCCCCCHHHHHHHHHHhcccCc-hHHH-H-HHHHHhH
Q 017414 129 ALQVFENMKNKSVITWTTMIAGLALHG-LGREA-LDMFSRMERARVKPNEITFIAILSACCHVGL-VELG-R-RYFNIMK 203 (372)
Q Consensus 129 A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a-~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a-~-~~~~~~~ 203 (372)
|..+..+..+.+...|..-++....+. +.+-- .+++......-..+....++... .++ .+.. . .++..+.
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 334443555566666666666555332 22211 12223333222223333333332 122 2211 1 2233333
Q ss_pred HhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHhCCCCc
Q 017414 204 SRYGIEPKIE-QYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASN--IYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 204 ~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
. -..|+.. .-+.+++-+.+.|-..+|..++..+ .. .|+...|..++..-. ..-+...+...++.+..-.-.++
T Consensus 453 -s-~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 -S-VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred -H-hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 2 2234443 3456788888999999999999988 22 457788888887432 23347778888888887333688
Q ss_pred chHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 279 GNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
..|......-...|..+.+-.++.+.
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHH
Confidence 89988887777889988888866554
No 411
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.89 E-value=8.1 Score=23.97 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=10.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHH
Q 017414 80 AALSACAQLGAVELGEWIHNYIE 102 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~ 102 (372)
.++.++...|++++|.+++..+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444555555555555544443
No 412
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.53 E-value=45 Score=28.81 Aligned_cols=86 Identities=15% Similarity=0.077 Sum_probs=56.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhC--C--CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHc
Q 017414 218 MIDLLGRAGYLQEAEKLLRRM--P--FEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 291 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~--~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 291 (372)
=..-|.+..++..|...|.+. . -.| +...|+.-..+-.-.|++..++.=..++...+|.+...|..=..++...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 344566667777777777665 1 122 3445555555566667777777777777778887777777777777777
Q ss_pred CCchhHHHHHHH
Q 017414 292 GRWNESGKIRKV 303 (372)
Q Consensus 292 g~~~~a~~~~~~ 303 (372)
.++++|....++
T Consensus 167 e~~~~a~nw~ee 178 (390)
T KOG0551|consen 167 ERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHhh
Confidence 776666655443
No 413
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=64.43 E-value=98 Score=27.02 Aligned_cols=133 Identities=13% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 017414 15 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELG 94 (372)
Q Consensus 15 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 94 (372)
+.+.++|.++-+.+..+-+.+..-......+|..++-...-.+...+.+.+..+.. ||......++++.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhHH
Q ss_pred HHHHHHHHHcCCCCchhHHHHHH-HHHHhcCCHHHHHHHHHhcccCC-cchHHHHHH
Q 017414 95 EWIHNYIEQYGLNTIVPLNNALI-DMYAKSGKIGKALQVFENMKNKS-VITWTTMIA 149 (372)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~ 149 (372)
...+..+.+.....+..+..++. ++.....+.+.+..+++++...+ ...++.+..
T Consensus 250 ~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 250 AILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred HHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.87 E-value=34 Score=23.24 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=34.0
Q ss_pred HHHcCChhHHHHHHHHHHHhCCC----C-----cchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 254 SNIYGDVELGECALQHLIKLEPH----N-----SGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..+.|++..|.+.+.+..+.... . ..+...++......|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34667888887666666552211 1 12334456677888999999998887743
No 415
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=63.81 E-value=23 Score=30.08 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=33.0
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
.+.|+.++|..+|+.+..+.|.++.+...++......++.-+|.++|-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 456777777777777777777777777666666666666666666554
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.65 E-value=14 Score=31.28 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCC
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENV 71 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 71 (372)
|+..|....+.|++++|+.++++.++.|+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34445555555555555555555554443
No 417
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=63.39 E-value=57 Score=24.32 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=43.4
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 228 LQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
-+.|.++.+-|| ...............|++..|.++.+.+...+|++..+-.....+|...|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 355666666664 223344445566778999999999999999999998888888887776553
No 418
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.09 E-value=1.1e+02 Score=27.31 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRME 168 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~ 168 (372)
+.-+...|...|+.+.|++.|.+.+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~R 177 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRAR 177 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhh
Confidence 3444445555555555555555433
No 419
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.28 E-value=1.6e+02 Score=28.82 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCCc
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKNKSV 141 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 141 (372)
..-..|+..|...+++.+|++++-...++++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 3445688999999999999999988876543
No 420
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.94 E-value=1.6e+02 Score=28.71 Aligned_cols=250 Identities=12% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HhCCCccHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 017414 51 AQMDQPNEAITLFRRMQVE----NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 126 (372)
.+.|+...|.+++.-.+-. | .+-..-=....-++...+..+...+++....+. ..+..+.....-++.-.|.-
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~~-s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~--~~~e~v~hG~cLGlGLa~mG 444 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGEG-SGYKEGGALYALGLIHANHGRGITDYLLQQLKT--AENEVVRHGACLGLGLAGMG 444 (929)
T ss_pred eeccccchHHHHhhhhCCccCCCC-CCccccchhhhhhccccCcCccHHHHHHHHHHh--ccchhhhhhhhhhccchhcc
Q ss_pred HHHHHHHHhcc----cCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH---HHHHHhcccCchHHHHHHH
Q 017414 127 GKALQVFENMK----NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFI---AILSACCHVGLVELGRRYF 199 (372)
Q Consensus 127 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~ 199 (372)
..-.++|+.++ ..+.++=.+-.-+..-..--..-.+.+++|...-......-.. .+.-++.--|+.++|..+.
T Consensus 445 Sa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI 524 (929)
T KOG2062|consen 445 SANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLI 524 (929)
T ss_pred cccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHH
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-hCCC
Q 017414 200 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIK-LEPH 276 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~ 276 (372)
+++.....--....-...+..+|+-.|+.....+++.-. ...-|+.-...+.-++.-..+++....+..-+.+ .+|.
T Consensus 525 ~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~H 604 (929)
T KOG2062|consen 525 KELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPH 604 (929)
T ss_pred HHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChh
Q ss_pred -CcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 277 -NSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 277 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
...+-..|+.+|+..|..+ |..+++-|
T Consensus 605 VRyGaA~ALGIaCAGtG~~e-Ai~lLepl 632 (929)
T KOG2062|consen 605 VRYGAAMALGIACAGTGLKE-AINLLEPL 632 (929)
T ss_pred hhhhHHHHHhhhhcCCCcHH-HHHHHhhh
No 421
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.89 E-value=1.8e+02 Score=29.26 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHh
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQV 68 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 68 (372)
-|..|+..|...|..++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488899999999999999999988876
No 422
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=61.76 E-value=11 Score=24.60 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHHHHHHcCcccccccc
Q 017414 335 PDFDRLYQILCKINGQMKFAEHLQNEFSG 363 (372)
Q Consensus 335 ~~~~~~~~~~~~~~~~m~~~g~~p~~~~~ 363 (372)
+...++++.+++..+.++.+|+.||...+
T Consensus 5 ~~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 5 GDLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 34567888899999999999999997654
No 423
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.43 E-value=1.2e+02 Score=28.99 Aligned_cols=86 Identities=7% Similarity=-0.041 Sum_probs=67.4
Q ss_pred HHhcCCHHHHHHHHhhC-CCCC-C------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 222 LGRAGYLQEAEKLLRRM-PFEA-N------AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 222 ~~~~g~~~~a~~~~~~~-~~~~-~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
..+..++..+.+.|..- ..-| | ....+.+--+|....+.|.|.++++++.+.+|.++-+-.....+....|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 34567888888887654 2111 1 23456677788899999999999999999999988888888889999999
Q ss_pred chhHHHHHHHHHhC
Q 017414 294 WNESGKIRKVMRDM 307 (372)
Q Consensus 294 ~~~a~~~~~~m~~~ 307 (372)
-++|+......+..
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999988777543
No 424
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.41 E-value=92 Score=25.69 Aligned_cols=112 Identities=17% Similarity=0.089 Sum_probs=66.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCH
Q 017414 151 LALHGLGREALDMFSRMERARVKPNEIT-FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYL 228 (372)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~ 228 (372)
|....+++.|+..|.+.+.. .|+..+ |+.-+..+.+..+++.+..=-.... .+.|+. -....+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 44556788888877776664 566543 4444556667788887776665555 445654 3334455666777778
Q ss_pred HHHHHHHhhC-------CCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 017414 229 QEAEKLLRRM-------PFEANAAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 229 ~~a~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
++|+..+.+. ++.+-...+..|..+--..-...+..++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~ 140 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIR 140 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHH
Confidence 8887777665 34444445555554433333333444433
No 425
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.37 E-value=98 Score=25.97 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=74.4
Q ss_pred hcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHhcccCchH-HHH
Q 017414 122 KSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMF----SRMERARVKPNEITFIAILSACCHVGLVE-LGR 196 (372)
Q Consensus 122 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~ 196 (372)
+.+++++|.+++..-. ..+.+.|+...|-++- +-..+.+.+++......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~Ga-----------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA-----------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHHH-----------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHHH-----------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 4566777777654321 2344455544433332 22233455555555455554443322111 112
Q ss_pred HHHHHhHH--hcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 197 RYFNIMKS--RYGIEP--KIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 197 ~~~~~~~~--~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
++.+.+.+ +.+-.+ ++.....+...|.+.|++.+|...|-... .|+...+..++.-....|
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~-------------- 135 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKG-------------- 135 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhc--------------
Confidence 22222221 112222 56777888899999999999988776653 233333322332222222
Q ss_pred hCCCCcchH-HHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 273 LEPHNSGNY-AILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 273 ~~p~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.|.+...| ...+--|...|+...|...++.....
T Consensus 136 -~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 -YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 23333333 23345677778888888887777543
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.87 E-value=50 Score=22.42 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=15.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 017414 250 LLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
+.......|+.++|...++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33455666777777777777766
No 427
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.85 E-value=66 Score=24.12 Aligned_cols=62 Identities=10% Similarity=0.110 Sum_probs=37.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 62 LFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 62 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
+...+.+.|++++..=. .++..+...++.-.|..+++.+.+.+...+..|.-.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34455666776665433 456666666666778888888887765554444333455555554
No 428
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=60.03 E-value=1.1e+02 Score=26.29 Aligned_cols=110 Identities=15% Similarity=-0.030 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhHHhcCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 017414 192 VELGRRYFNIMKSRYGI---EPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQ 268 (372)
Q Consensus 192 ~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 268 (372)
.+.|.+.|+.......- ..++.....+.....+.|..+....+++.....++...-..++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56677888887753111 345556666777777788766666666665445677778888899888889888888888
Q ss_pred HHHHhC-CCCcchHHHHHHHHHHcCCc--hhHHHHHH
Q 017414 269 HLIKLE-PHNSGNYAILSNIYAILGRW--NESGKIRK 302 (372)
Q Consensus 269 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~a~~~~~ 302 (372)
.+...+ -.... ...++..+...+.. +.+.+.+.
T Consensus 226 ~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHH
Confidence 888743 22222 33333444433333 55555443
No 429
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.58 E-value=2.2e+02 Score=29.52 Aligned_cols=120 Identities=8% Similarity=-0.076 Sum_probs=65.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcccC--CcchHHHHHHHH
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTI----VPLNNALIDMYAKSGKIGKALQVFENMKNK--SVITWTTMIAGL 151 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~ 151 (372)
|..+++.+-+.+..+.+.++-..+++.- +++ ..+++++.+.....|.+-+|...+-+-... -......++..+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivL 1064 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVL 1064 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 5567777777777888777776666541 222 345667777777788887777665443221 112444555555
Q ss_pred HhcCCh------------hHHHH-HHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHH
Q 017414 152 ALHGLG------------REALD-MFSRMERARVKPNEITFIAILSACCHVGLVELGRRY 198 (372)
Q Consensus 152 ~~~~~~------------~~a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 198 (372)
+..|.+ ++... +++..-+....-....|..|-..+...+++.+|-.+
T Consensus 1065 fecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1065 FECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 555544 33333 233222221111223455555556667777666543
No 430
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.41 E-value=1.3e+02 Score=26.73 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=42.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-ccCchHHHHHHHHHhHH
Q 017414 147 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC-HVGLVELGRRYFNIMKS 204 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 204 (372)
.|..+.+.|-+.-|+++.+-+...+..-|......+|+.|+ +.++++--.++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 45677888889999998888888765556666666777665 66777777777776553
No 431
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.39 E-value=33 Score=19.90 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=16.9
Q ss_pred HhCCCccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017414 51 AQMDQPNEAITLFRRMQVENVKPDEIAMLAAL 82 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 82 (372)
.+.|-..++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555554443
No 432
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.26 E-value=68 Score=25.16 Aligned_cols=61 Identities=13% Similarity=0.221 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhHHhcCCCcCH-HHH-----HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 017414 192 VELGRRYFNIMKSRYGIEPKI-EQY-----GCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLA 252 (372)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~-~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~ 252 (372)
++.|..+|+.+.++...+.+. ... ...+-.|.+.|.+++|.+++++.--.|+......-+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~ 151 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLL 151 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHH
Confidence 456667777776543221111 111 1233456777888888888877722555544443333
No 433
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.22 E-value=74 Score=23.86 Aligned_cols=76 Identities=9% Similarity=0.214 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc---------CCcchHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017414 114 NALIDMYAKSGKIGKALQVFENMKN---------KSVITWTTMIAGLALHGL-GREALDMFSRMERARVKPNEITFIAIL 183 (372)
Q Consensus 114 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~ 183 (372)
+.++.-....++.....++++.+.. .+...|..++.+..+..- ---+..+|.-+++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4455544555555555555554421 233455555555544443 333455555555555566666666666
Q ss_pred HHhccc
Q 017414 184 SACCHV 189 (372)
Q Consensus 184 ~~~~~~ 189 (372)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 655544
No 434
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.15 E-value=1.4e+02 Score=26.96 Aligned_cols=135 Identities=12% Similarity=0.071 Sum_probs=65.4
Q ss_pred HHHHhcCCHHHHHHHHhccCCCChh--hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChH
Q 017414 17 AGYAKVGDLNNARALFELMTEKNVI--SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI--AMLAALSACAQLGAVE 92 (372)
Q Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~ 92 (372)
....+.|+.+-+..+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+
T Consensus 7 ~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 7 CDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred HHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 3445677888777777654444322 1233444455666654 334445556555432 1123444555667776
Q ss_pred HHHHHHHHHHHcCCCCchh---HHHHHHHHHHhcCCHHHHHHHHHhcccCCc---chHHHHHHHHHhcCChhHH
Q 017414 93 LGEWIHNYIEQYGLNTIVP---LNNALIDMYAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 93 ~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a 160 (372)
.+..+++ .|...+.. .-.+.+...+..|+.+-+..+++.-..++. ...+. +...+..|+.+-+
T Consensus 83 ~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v 151 (413)
T PHA02875 83 AVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGI 151 (413)
T ss_pred HHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHH
Confidence 6554443 33211110 012334445566777766666665443322 22223 3333456665443
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=58.77 E-value=1.2e+02 Score=26.10 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 162 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
++|+.+...++.|.-..|.-+.-.+.+.=.+..+..+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444455555555554444444444444555555555555
No 436
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=57.98 E-value=67 Score=23.37 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=29.4
Q ss_pred HHHHHHHHHH--hCCCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 263 GECALQHLIK--LEPHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 263 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
...+|..+.. ++...+..|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5667777766 445556677788888888888888888875
No 437
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=57.60 E-value=2.3e+02 Score=29.00 Aligned_cols=249 Identities=14% Similarity=0.045 Sum_probs=119.9
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
..+|+.+-...+..+.+.+..+....+...+..++...-...+.++.+.+........+..+... +|...-...+.+
T Consensus 631 ~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~a 707 (897)
T PRK13800 631 ADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDV 707 (897)
T ss_pred cCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHH
Confidence 45566666666666666665443333444444455555555555554443222222333333332 455554455555
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhH-HHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGRE-ALDM 163 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~ 163 (372)
+...+..+ .. .+-...+ .++..+-...+.++.+.+..+ .+...+..++..+-...+.++...+..+. +...
T Consensus 708 L~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~ 779 (897)
T PRK13800 708 LRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGDA 779 (897)
T ss_pred HHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHH
Confidence 55443211 11 2222222 344555555555555544432 23333445566666666666666655432 3344
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC
Q 017414 164 FSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEAN 243 (372)
Q Consensus 164 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 243 (372)
+..+.. .++...-...+.++.+.|..+.+...+..+.+ .++...-...+.++...+.. ++...+..+-..|+
T Consensus 780 L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D~~ 851 (897)
T PRK13800 780 VRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPALVEALTDPH 851 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHHHHHHhcCCC
Confidence 444443 34555555666666666665444343444442 23444445556666665543 33343333322566
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 244 AAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
..+-...+.++...+....+...+..+.+
T Consensus 852 ~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 852 LDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66666666666665333445555554444
No 438
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.25 E-value=16 Score=26.75 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=26.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 017414 150 GLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
.....|.-.+|..+|.+|++.|-+||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 344567778899999999999988874 66666543
No 439
>PRK14700 recombination factor protein RarA; Provisional
Probab=55.74 E-value=1.3e+02 Score=25.73 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=16.7
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
.|.+.|.-++.+|++.|-.|.-..-..++-++...|
T Consensus 140 SDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 140 TDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345555555555555554444333343444444444
No 440
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.66 E-value=29 Score=29.49 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFI 180 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 180 (372)
|+..|..-.+.|++++|++++++.++.|..--..+|-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 5577777777777777777777777777654444443
No 441
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.63 E-value=78 Score=23.03 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 017414 93 LGEWIHNYIEQYGLNTI-VPLNNALIDMYAKSGKIGKALQVFEN 135 (372)
Q Consensus 93 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 135 (372)
.+..+|..|...|+-.. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777777665443 45566777777777777777777764
No 442
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.16 E-value=2.5e+02 Score=28.39 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCC--h-----hhHHHHHHHHHhCCCc--cHHHHHHHHHHhCCCCCCHHHHH--
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTEKN--V-----ISWTTLIAGYAQMDQP--NEAITLFRRMQVENVKPDEIAML-- 79 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-----~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~-- 79 (372)
-|..|+..|...|..++|+++|....+.+ . ..+.-++..+.+.+.. +-.+++-....+....-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 37889999999999999999999887622 1 2344466655555555 55555554444322110011111
Q ss_pred ----------HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 017414 80 ----------AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 80 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (372)
..+-.+......+.+..+++.+....-.++....+.++..|.+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1223345666777888888888876656677777888887765
No 443
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=53.89 E-value=34 Score=29.23 Aligned_cols=79 Identities=5% Similarity=0.038 Sum_probs=47.2
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHH-HHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHH
Q 017414 208 IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGS-LLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL 284 (372)
Q Consensus 208 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 284 (372)
+..|+..|...+.--.+.|.+.+...++.+. ...| |+..|-. --.-+...++++.+..+|.+.++.+|.+|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3445555555554444555666666666665 2233 4444433 22245567788888888888888888888777654
Q ss_pred HH
Q 017414 285 SN 286 (372)
Q Consensus 285 ~~ 286 (372)
.+
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 444
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.20 E-value=1.3e+02 Score=24.84 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC
Q 017414 241 EANAAIWGSLLAASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
.|.+.....++..|.. +++++|.+.+..+.+++
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lg 268 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLG 268 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcC
Confidence 3555555555554432 45666666666666555
No 445
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=52.84 E-value=70 Score=26.83 Aligned_cols=57 Identities=23% Similarity=0.130 Sum_probs=47.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+-.++...++++.|....++...++|.++.-..--+.+|.+.|...-|..-++...+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 334677889999999999999999999888888888899999999999988876433
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.60 E-value=61 Score=26.90 Aligned_cols=50 Identities=26% Similarity=0.184 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC----C----CCCCHHHHHHHHHHHHHcCChhHHHHH
Q 017414 217 CMIDLLGRAGYLQEAEKLLRRM----P----FEANAAIWGSLLAASNIYGDVELGECA 266 (372)
Q Consensus 217 ~li~~~~~~g~~~~a~~~~~~~----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~ 266 (372)
.+..-|...|++++|.++|+.+ . ..+...+...+..++...|+.+....+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555666666666666666655 0 112333444455555566665555544
No 447
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.23 E-value=2.3e+02 Score=28.47 Aligned_cols=132 Identities=16% Similarity=0.109 Sum_probs=91.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 196 (372)
...+..+|+++.|++.-.++. +..+|..|+..-.+.|+.+-|+..|++.+. |..|--.|.-.|+.++-.
T Consensus 650 F~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 445667788998888876664 556899999999999999999999987664 333444566778998888
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
++.+.+..+ .|..+ ....-.-.|+.++-..+++..+..|-. |. ....+|.-+.|.++.++...
T Consensus 719 Km~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 887777643 23221 222223468899999999988644421 11 22456777888888888766
No 448
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.22 E-value=99 Score=29.66 Aligned_cols=47 Identities=6% Similarity=-0.046 Sum_probs=23.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHhcccCch
Q 017414 146 TMIAGLALHGLGREALDMFSRMERAR--VKPNEITFIAILSACCHVGLV 192 (372)
Q Consensus 146 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 192 (372)
+|..+|..+|++..+.++++.+...+ -+.=...+|..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 45555555555555555555555431 111123445555555555544
No 449
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.12 E-value=13 Score=32.05 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=46.8
Q ss_pred hcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHH
Q 017414 21 KVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGEW 96 (372)
Q Consensus 21 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~ 96 (372)
..|.++.|++.|....+ +....|..-.+.+++.+++..|++=+....+ +.||.. .|-.--.+....|+++++..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 34556666666655554 2233444555556666666666666666555 234322 23333334444566666666
Q ss_pred HHHHHHHcCCCCc
Q 017414 97 IHNYIEQYGLNTI 109 (372)
Q Consensus 97 ~~~~~~~~~~~~~ 109 (372)
.++...+.++.+.
T Consensus 204 dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 204 DLALACKLDYDEA 216 (377)
T ss_pred HHHHHHhccccHH
Confidence 6666666554443
No 450
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=50.67 E-value=1.3e+02 Score=29.04 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCC------hhhHHHHHHHHHhCCCcc------HHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 14 TMVAGYAKVGDLNNARALFELMTEKN------VISWTTLIAGYAQMDQPN------EAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 14 ~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~------~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
+++.+|..+|++.++.++++.....+ ...||.-++.+.+.|.++ .|-+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 79999999999999999999887522 356899999999999875 3344444433 55677888777
Q ss_pred HHHHHc
Q 017414 82 LSACAQ 87 (372)
Q Consensus 82 ~~~~~~ 87 (372)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766544
No 451
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.32 E-value=1.9e+02 Score=25.92 Aligned_cols=52 Identities=4% Similarity=-0.166 Sum_probs=24.0
Q ss_pred HhCCCccHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--ccCChHHHHHHHHHHHH
Q 017414 51 AQMDQPNEAITLFRRMQVENVKPDEI--AMLAALSACA--QLGAVELGEWIHNYIEQ 103 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 103 (372)
...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3555666666666665554 333333 2223333332 22344555555555443
No 452
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.31 E-value=4.3e+02 Score=30.04 Aligned_cols=259 Identities=12% Similarity=0.040 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhc-cCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 017414 11 FWNTMVAGYAKVGDLNNARALFEL-MTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 89 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 89 (372)
.|-.+...|+.-++++....+... ...|+ .++ -|......|+++.|...|+++...+ ++...+++.++......+
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l~~-qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS--LYQ-QILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCcc--HHH-HHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 344555689999999998888774 33333 333 3334567899999999999998764 334667777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHH-HHHHHhcCCHHHHHHHHH-----------------hcccCCcchH-HHH---
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNAL-IDMYAKSGKIGKALQVFE-----------------NMKNKSVITW-TTM--- 147 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~-----------------~~~~~~~~~~-~~l--- 147 (372)
.++...-..+-....- .+....++++ +.+--+.++++....... .+.++|.... +.+
T Consensus 1498 ~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~ 1576 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENS 1576 (2382)
T ss_pred chhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 7777666554444332 2222223222 334456666666555533 1112222211 110
Q ss_pred ----H---HHHHhcCChhHHHHHHHHHHH-----------cCCCCCHHH------HHHHHHHhcccCchHHHHHHHHHhH
Q 017414 148 ----I---AGLALHGLGREALDMFSRMER-----------ARVKPNEIT------FIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 148 ----~---~~~~~~~~~~~a~~~~~~~~~-----------~~~~p~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
+ .+++..|-+..+.++.-++.. .+..++..+ |..-+..-....+..+-.--+++..
T Consensus 1577 r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~ 1656 (2382)
T KOG0890|consen 1577 RELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSM 1656 (2382)
T ss_pred HHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHH
Confidence 0 111111222222222211110 011121111 1111111111111111111111111
Q ss_pred H----hcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC
Q 017414 204 S----RYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 204 ~----~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
- +.+... ...+|....+....+|+++.|...+-.....--+..+.......-..|+...|+.+++...+..
T Consensus 1657 l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1657 LDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 1 101111 2467778888888899999998876665222234556667777889999999999999999744
No 453
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.19 E-value=1.4e+02 Score=24.36 Aligned_cols=93 Identities=19% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCC-CCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENV-KPDEIAML--AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDM 119 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (372)
+|.|+--|.-...+.+|-+.|..-..... .+|..++. .-+......|+.+.|.+....+-..-+..|...+-.|...
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q 108 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQL 108 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHH
Q ss_pred ----HHhcCCHHHHHHHHHh
Q 017414 120 ----YAKSGKIGKALQVFEN 135 (372)
Q Consensus 120 ----~~~~g~~~~A~~~~~~ 135 (372)
..+.|..++|+++++.
T Consensus 109 ~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 109 HLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHhhhHHHHHHHHHH
No 454
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.70 E-value=57 Score=29.33 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhc-----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRY-----GI-EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
.+...|++.++-.||+..|.++++.+.-.. ++ ...+.++..+.-+|.-.+++.+|.++|..+
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888999999999988764211 11 113456677788888999999999999886
No 455
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=49.55 E-value=38 Score=21.29 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYG 105 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 105 (372)
..+.++.++..++.-...+.+...+.++.+.|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444444444444444444444444444
No 456
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.22 E-value=1.7e+02 Score=25.14 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 175 NEITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 175 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
+...-..++.+.+...+.+...++++.+..
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 444455555555556666666666666654
No 457
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=48.95 E-value=2.2e+02 Score=29.84 Aligned_cols=160 Identities=11% Similarity=-0.023 Sum_probs=94.8
Q ss_pred HHhcCCHHHHHH------HHH----hcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHH-----cCC--CCCHHHHHHH
Q 017414 120 YAKSGKIGKALQ------VFE----NMKNKSVITWTTMIAGLALHGLGREALDMFSRMER-----ARV--KPNEITFIAI 182 (372)
Q Consensus 120 ~~~~g~~~~A~~------~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~p~~~~~~~l 182 (372)
....|.+.+|.+ ++. .+.......|..+...+.+.|+.++|+..-.+..- .|. .-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344556665555 443 22233456788888889999999999886554321 122 1223445555
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCC------CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--------CC--CCCHHH
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGI------EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--------PF--EANAAI 246 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--------~~--~~~~~~ 246 (372)
...+...+....|...+.+.....++ +|...+.+.+-..+...++++.|.++.+.+ +. -+....
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55555566777777777666543222 333444444444455557788887777765 11 135567
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH-----hCCCCcc
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIK-----LEPHNSG 279 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~ 279 (372)
+..+.+.+...+++..|....+.... +++++..
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsr 1139 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSR 1139 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCccc
Confidence 77888888888888777766655543 5555443
No 458
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=48.87 E-value=43 Score=18.04 Aligned_cols=18 Identities=11% Similarity=-0.134 Sum_probs=8.7
Q ss_pred HHHHHHHHcCChhHHHHH
Q 017414 249 SLLAASNIYGDVELGECA 266 (372)
Q Consensus 249 ~l~~~~~~~~~~~~a~~~ 266 (372)
.+...+-..|++++|..+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 334444555555555555
No 459
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.03 E-value=1.2e+02 Score=23.53 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=30.2
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 017414 67 QVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126 (372)
Q Consensus 67 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 126 (372)
.+.|++++..-. .++..+....+.-.|.++++.+.+.+...+..|.---++.+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344555554433 33333333444456666777766666544544433345566665544
No 460
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.79 E-value=2.2e+02 Score=25.87 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=6.7
Q ss_pred cCCHHHHHHHHHh
Q 017414 123 SGKIGKALQVFEN 135 (372)
Q Consensus 123 ~g~~~~A~~~~~~ 135 (372)
.|+...++.+++.
T Consensus 187 ~Gd~R~aln~Le~ 199 (413)
T PRK13342 187 NGDARRALNLLEL 199 (413)
T ss_pred CCCHHHHHHHHHH
Confidence 4555555555544
No 461
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=47.09 E-value=31 Score=28.05 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=31.5
Q ss_pred HhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 223 GRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
.+.++.+.+.+++.+. ...| ....|-.+...--+.|+++.|.+.+++..+++|++.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3455556666666555 3223 344555555555566666666666666666666544
No 462
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=46.73 E-value=86 Score=20.91 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=25.8
Q ss_pred hcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhH
Q 017414 122 KSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 122 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (372)
...+.++|.++++.+..++..+|..+..++...|...-
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 34456777777777777777777777777766665443
No 463
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.04 E-value=1.9e+02 Score=24.67 Aligned_cols=51 Identities=12% Similarity=0.021 Sum_probs=25.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchh-------HHHHHHHHHHhcCCHHHHHHH
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVP-------LNNALIDMYAKSGKIGKALQV 132 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~ 132 (372)
.+...+.+++++|+..+.++...|+..+.. +...+...|...|++..-.++
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 334445555555555555555555444332 223455555555555444333
No 464
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.79 E-value=1.1e+02 Score=23.74 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=38.1
Q ss_pred HHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 017414 167 MERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 167 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 229 (372)
+...|++++..-. .++..+......-.|.++++.+.+. +...+..|...-++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3455666665433 3344444445666788888888765 55566666666677777777654
No 465
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.78 E-value=40 Score=22.47 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=35.9
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 017414 29 RALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELG 94 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 94 (372)
..+++.+.+.++.+....-..-....+.++|.+++..+...| ..+|.....++...|....|
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHH
Confidence 345555555566665555555555666777777777766655 24555555665555544433
No 466
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.58 E-value=1.2e+02 Score=25.25 Aligned_cols=76 Identities=9% Similarity=-0.077 Sum_probs=50.6
Q ss_pred HHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC------CCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 229 QEAEKLLRRMPF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEP------HNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 229 ~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
..|...|...+. +--......+..-|...|++++|.++++.+..... ....+...+..++...|+.+....+-
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 345555555431 12233344566788999999999999999965321 12345667788888999999888765
Q ss_pred HHH
Q 017414 302 KVM 304 (372)
Q Consensus 302 ~~m 304 (372)
=+|
T Consensus 242 leL 244 (247)
T PF11817_consen 242 LEL 244 (247)
T ss_pred HHH
Confidence 444
No 467
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.90 E-value=28 Score=34.20 Aligned_cols=99 Identities=17% Similarity=0.024 Sum_probs=50.4
Q ss_pred cccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 017414 187 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECA 266 (372)
Q Consensus 187 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 266 (372)
...|+++.|.+.-..+- +..+|..|+..-.++|+.+-|+-.|++.. .|..|--.|...|+.++..++
T Consensus 654 Le~gnle~ale~akkld-------d~d~w~rLge~Al~qgn~~IaEm~yQ~~k------nfekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD-------DKDVWERLGEEALRQGNHQIAEMCYQRTK------NFEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred hhcCCHHHHHHHHHhcC-------cHHHHHHHHHHHHHhcchHHHHHHHHHhh------hhhheeEEEEEeCCHHHHHHH
Confidence 34455555555433332 45566666666666666666666666652 133444445556666655555
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 267 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 267 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
.+.+...+-.. .........|+.++=.++++.
T Consensus 721 ~~iae~r~D~~-----~~~qnalYl~dv~ervkIl~n 752 (1202)
T KOG0292|consen 721 MKIAEIRNDAT-----GQFQNALYLGDVKERVKILEN 752 (1202)
T ss_pred HHHHHhhhhhH-----HHHHHHHHhccHHHHHHHHHh
Confidence 44443322111 111222345666666666653
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.24 E-value=84 Score=22.18 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=25.9
Q ss_pred HHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 017414 46 LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 90 (372)
Q Consensus 46 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 90 (372)
++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 444455555566667777777666555555555555555555543
No 469
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=44.22 E-value=2.4e+02 Score=25.42 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=23.1
Q ss_pred HHHHHHHH---ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 79 LAALSACA---QLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 79 ~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
-.+++++. +-.+.+.|.-++.+|++.|-.|--..-..++-++..-|
T Consensus 250 YdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 250 YDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred HHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 34444443 33466666666666666664444333333333443333
No 470
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=44.18 E-value=99 Score=20.89 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=25.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-----cchHHHHHHHHHhcCC
Q 017414 107 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS-----VITWTTMIAGLALHGL 156 (372)
Q Consensus 107 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ 156 (372)
|.|......+...+...|++++|++.+-++.+.+ ...-..|+..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4455555566666777777777766666655432 2344445554444444
No 471
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.74 E-value=1.4e+02 Score=22.41 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=42.4
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 017414 28 ARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 90 (372)
Q Consensus 28 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 90 (372)
+...++.-.-+-...-..++..+.+.+..-.|.++|+++.+.+...+..|.-..+..+...|-
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 334443332223344667888888888889999999999998766666665556666665553
No 472
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.70 E-value=66 Score=22.73 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=22.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 191 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 191 (372)
+..+...+.+-.|.++++.+.+.+...+..|....++.+.+.|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 34444444455566666666555544555555555555555443
No 473
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.58 E-value=99 Score=21.42 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q 017414 114 NALIDMYAKSGKIGKALQVFEN 135 (372)
Q Consensus 114 ~~l~~~~~~~g~~~~A~~~~~~ 135 (372)
..|.-.|++.|+-+.|.+-|+.
T Consensus 76 AhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHH
Confidence 3445555555555555555553
No 474
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=43.18 E-value=1.8e+02 Score=26.45 Aligned_cols=109 Identities=14% Similarity=0.176 Sum_probs=55.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc---CC
Q 017414 151 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA---GY 227 (372)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~ 227 (372)
+...|++.+|+..|+.++.. ..+.......+.+++.+++....+- +....+..-.+. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrEY--------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICREY--------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccccc
Confidence 45688999999998887642 2222223333445555555554421 111111111111 11
Q ss_pred HHHHHH------HHhhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 228 LQEAEK------LLRRMPFEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 228 ~~~a~~------~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
.++..+ .|...+++|. .-+.+.-+..+.+.+++..|..+.+++++++|..
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 222211 2222344552 2345666777788999999999999999998854
No 475
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.05 E-value=66 Score=29.30 Aligned_cols=87 Identities=11% Similarity=-0.023 Sum_probs=53.4
Q ss_pred HHHHHhCCCccHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcC
Q 017414 47 IAGYAQMDQPNEAITLFRRMQVENVKPDEIA-MLAALSACAQLGAVELGEWIHNYIEQYGLNTI-VPLNNALIDMYAKSG 124 (372)
Q Consensus 47 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 124 (372)
+..+.+.+.++.|+.++.+.++. .|+-.. |..-..++.+.+++..|..=...+++.. |+ ...|.--..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 44566677888888888888874 565444 3444477788888888887777777654 32 222222233444445
Q ss_pred CHHHHHHHHHhcc
Q 017414 125 KIGKALQVFENMK 137 (372)
Q Consensus 125 ~~~~A~~~~~~~~ 137 (372)
.+.+|...|+...
T Consensus 87 ~~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 87 EFKKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHHHhh
Confidence 5556666655543
No 476
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.98 E-value=41 Score=21.14 Aligned_cols=51 Identities=14% Similarity=0.007 Sum_probs=35.4
Q ss_pred CCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 36 TEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
..+....++.++..+++..-.+.++.++.++...| ..+..+|..-++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34556677888888888777888888888888877 4566666666655544
No 477
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=42.67 E-value=2.1e+02 Score=24.22 Aligned_cols=50 Identities=8% Similarity=0.017 Sum_probs=27.3
Q ss_pred CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC---------------CchhHHHHHHHHHhCCCc
Q 017414 258 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILG---------------RWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~g~~ 310 (372)
.+..+|...|+++.+.+. ......+. .+...| +...|...+......|..
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 355666666666666554 23333333 333333 666666666666555543
No 478
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=42.39 E-value=29 Score=19.96 Aligned_cols=16 Identities=13% Similarity=-0.178 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCcccc
Q 017414 344 LCKINGQMKFAEHLQN 359 (372)
Q Consensus 344 ~~~~~~~m~~~g~~p~ 359 (372)
-+++.+.+++.||.||
T Consensus 31 r~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 31 RERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHHCCCCC
Confidence 4566788889999997
No 479
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.15 E-value=1.3e+02 Score=25.66 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCh
Q 017414 182 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDV 260 (372)
Q Consensus 182 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 260 (372)
++....+..+.....+.+..+. ....-...++.+...|++..|++++.+. ..--....++.+-..-.+..+.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~ 176 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQET 176 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHH
Q ss_pred -hHHHHHHHHHHH--hCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 261 -ELGECALQHLIK--LEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 261 -~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
+...+.++.... ..-.++..|..+..+|.-.|+.+.+.+-+..
T Consensus 177 ~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 177 LELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 480
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.66 E-value=2.1e+02 Score=23.89 Aligned_cols=86 Identities=13% Similarity=-0.016 Sum_probs=46.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcc----------cCCcc-----------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 017414 117 IDMYAKSGKIGKALQVFENMK----------NKSVI-----------TWTTMIAGLALHGLGREALDMFSRMERARVKPN 175 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~----------~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 175 (372)
.+-+.+.|++.+|...|.+.. +|... .+...-.++...|++-++++.-.+.+... +-+
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGN 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-Cch
Confidence 344556667766666655432 23222 22223344455566666666666666542 334
Q ss_pred HHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 176 EITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
...|..-..+....-+.++|..=|..+.
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4555555555555666666666665555
No 481
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=41.24 E-value=79 Score=25.90 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=45.4
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN 243 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~ 243 (372)
...+.++.+.+.+++.++.. -.+.....|..+...-.+.|+++.|.+-|++. .+.|.
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34678899999999999983 33445678888888889999999999999887 55554
No 482
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=40.20 E-value=2.4e+02 Score=24.30 Aligned_cols=16 Identities=44% Similarity=0.497 Sum_probs=9.1
Q ss_pred HHHHHHHHHHcCChhH
Q 017414 247 WGSLLAASNIYGDVEL 262 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~ 262 (372)
|..|+.+++.+|+.+.
T Consensus 324 yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 324 YAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhHHHHHHhcCChHHH
Confidence 5556666666665543
No 483
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=40.19 E-value=1.4e+02 Score=21.60 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC--------CCCCCH-HHHHHHH----HHHHHcCChhHHHHHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM--------PFEANA-AIWGSLL----AASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~--------~~~~~~-~~~~~l~----~~~~~~~~~~~a~~~~~~~~~ 272 (372)
...+..|..++...|++++++.-.+.. .+..|. ..|...+ .++-..|+.++|...|+..-+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 344555666666777766654433222 222222 2333222 244455666666666655433
No 484
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=39.82 E-value=83 Score=20.65 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=9.0
Q ss_pred HHhcCCHHHHHHHHh
Q 017414 19 YAKVGDLNNARALFE 33 (372)
Q Consensus 19 ~~~~~~~~~A~~~~~ 33 (372)
.++.|+++-...+++
T Consensus 4 A~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 4 AAQNGNLEILKFLLE 18 (89)
T ss_dssp HHHTTTHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 455666666666665
No 485
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=39.65 E-value=1.1e+02 Score=19.99 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=33.6
Q ss_pred CCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 017414 37 EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ 103 (372)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 103 (372)
+++...-...+..+.+.++. ++...+..+.+ .++..+-...+.++.+.|+ +++...+.++..
T Consensus 11 ~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l~ 72 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGDP-EAIPALIELLK---DEDPMVRRAAARALGRIGD-PEAIPALIKLLQ 72 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTHH-HHHHHHHHHHT---SSSHHHHHHHHHHHHCCHH-HHTHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHc---CCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHc
Confidence 45555555556655555433 45555555553 3566666666666666664 334444444443
No 486
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.85 E-value=60 Score=23.19 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=26.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC
Q 017414 146 TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190 (372)
Q Consensus 146 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 190 (372)
.++..+...+.+-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 445555555556667777777776666666665555555555544
No 487
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=38.62 E-value=69 Score=29.14 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCC-CCC--ChHHHHHHHHHHHHHHHHcCccccccccc
Q 017414 295 NESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDT-SHP--DFDRLYQILCKINGQMKFAEHLQNEFSGV 364 (372)
Q Consensus 295 ~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~m~~~g~~p~~~~~~ 364 (372)
..+..+++.+...|+....|-.. .+..-+. ..| ++-.-++-.+++.-...+.|+..|++.|.
T Consensus 151 pDarlL~e~~~a~G~~a~EGG~I--------SYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FG 215 (480)
T TIGR01503 151 PDARLLAEIILAGGFTSFEGGGI--------SYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFG 215 (480)
T ss_pred CcHHHHHHHHHHcCCCccCCCcc--------eeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccccc
Confidence 45788888888899986654432 1122222 222 34444555567888888889999999885
No 488
>PF14044 NETI: NETI protein
Probab=37.81 E-value=26 Score=21.14 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCccccc
Q 017414 344 LCKINGQMKFAEHLQNE 360 (372)
Q Consensus 344 ~~~~~~~m~~~g~~p~~ 360 (372)
+..-+++|++.||.|-.
T Consensus 10 I~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHHHHHcCCCcee
Confidence 44566999999999853
No 489
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.67 E-value=4.2e+02 Score=26.25 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHH----------HHHHHHHHHccCChHHHHHHHHHHHHcCCCCch
Q 017414 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA----------MLAALSACAQLGAVELGEWIHNYIEQYGLNTIV 110 (372)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 110 (372)
.+-..++-.|....+++..+++.+.+++. ||..- |...++---+-|+.++|....-.+.+..-+..+
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 45666777788888888888888888763 43221 223333334557778888777666654323333
Q ss_pred hHHHHHHHH---------HHhcCCHHHHHHHHHhcc
Q 017414 111 PLNNALIDM---------YAKSGKIGKALQVFENMK 137 (372)
Q Consensus 111 ~~~~~l~~~---------~~~~g~~~~A~~~~~~~~ 137 (372)
..|....+. |...+..+.|.++|++.-
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF 314 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF 314 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh
Confidence 333333332 233445666677776654
No 490
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=37.64 E-value=82 Score=22.48 Aligned_cols=45 Identities=7% Similarity=0.142 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 89 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 89 (372)
.++..+...+.+-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 444555555556666666666666555555554444444444433
No 491
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=36.84 E-value=3.3e+02 Score=24.79 Aligned_cols=237 Identities=12% Similarity=-0.011 Sum_probs=120.2
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 017414 44 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 123 (372)
Q Consensus 44 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (372)
...+.++...| ..++..+....... ++...+.....++....+......+.+.+ . .++..+....++++...
T Consensus 42 ~AhLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L-~---d~~~~vr~aaa~ALg~i 113 (410)
T TIGR02270 42 LAHVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL-Q---AGPEGLCAGIQAALGWL 113 (410)
T ss_pred HHHHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh-c---CCCHHHHHHHHHHHhcC
Confidence 33466777777 45667666666432 33333433334443333222223333322 2 34455667778888777
Q ss_pred CCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 124 GKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 124 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
+..+-...+..-+...+.....+.+.++...+. ++...+....+ .++...-..-+.++...+..+. ...+..+.
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a-~~~L~~al 187 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLS-ESTLRLYL 187 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccc-hHHHHHHH
Confidence 777666666666666666665555566655442 23334444443 3455555555566665555433 33333443
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHH
Q 017414 204 SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAI 283 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 283 (372)
. .++...-..-+.+....|. ++|...+......++......+...+...|. +++...+..+.+. +.+-..
T Consensus 188 ~----d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d----~~vr~~ 257 (410)
T TIGR02270 188 R----DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA----AATRRE 257 (410)
T ss_pred c----CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC----hhhHHH
Confidence 2 3455555556666667776 5566555543223444443444443333333 2444444443331 124555
Q ss_pred HHHHHHHcCCchhHHHHHHHH
Q 017414 284 LSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m 304 (372)
.+.++.+.|+...+..+.+.|
T Consensus 258 a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 258 ALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHHHHcCCcchHHHHHHHh
Confidence 666666666666555555555
No 492
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=36.82 E-value=3.1e+02 Score=24.57 Aligned_cols=189 Identities=8% Similarity=0.028 Sum_probs=106.0
Q ss_pred cCCHHHHHHHHHhcccC---------CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc----cc
Q 017414 123 SGKIGKALQVFENMKNK---------SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC----HV 189 (372)
Q Consensus 123 ~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~ 189 (372)
.++.+.|.+-+-...+. +......++..|...++|+.--+...-+-..... ...+...++.-++ ..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-lk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-LKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccCC
Confidence 56677776665544431 3345566677777777777665555444332111 1122223332222 11
Q ss_pred CchHHHHHHHHHhHH--hcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC------CHHH--HHHHHHHHHH
Q 017414 190 GLVELGRRYFNIMKS--RYGIEP---KIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA------NAAI--WGSLLAASNI 256 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~--~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~--~~~l~~~~~~ 256 (372)
.+.+--..+.+.+.. ...+-. ....-..|...+-..|++++|.+++.+.+++. ...+ ..-=++.|..
T Consensus 104 ~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~ 183 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLL 183 (439)
T ss_pred CCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 122222222222221 001111 11222446677788999999999999985331 1111 1122457788
Q ss_pred cCChhHHHHHHHHHHHhCCCCc-------chHHHHHHHHHHcCCchhHHHHHHHHHhCCCccC
Q 017414 257 YGDVELGECALQHLIKLEPHNS-------GNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 312 (372)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 312 (372)
.+|+-.|.-+-+++....-+.+ ..|..++......+.+=.+-+.|+..-+.|--..
T Consensus 184 ~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 184 RLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred hhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 8999999888888876332222 3677788888888899999999998877665443
No 493
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.62 E-value=5.3e+02 Score=27.11 Aligned_cols=117 Identities=10% Similarity=0.032 Sum_probs=61.8
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH----HHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA----AIWGSL 250 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~l 250 (372)
|..++..+-+.+-.+.+.++-..+.+ .++++ ..+++.+.......|.+-+|...+-+. ||. .....+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---pdserrrdcLRql 1060 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---PDSERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---CcHHHHHHHHHHH
Confidence 45566666666777777776666664 23332 234556666666677777776665553 332 234445
Q ss_pred HHHHHHcCChh------------HHHH-HHHHHHHhCCCCcc-hHHHHHHHHHHcCCchhHHHH
Q 017414 251 LAASNIYGDVE------------LGEC-ALQHLIKLEPHNSG-NYAILSNIYAILGRWNESGKI 300 (372)
Q Consensus 251 ~~~~~~~~~~~------------~a~~-~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~ 300 (372)
+..++..|..+ +.+. +++...+..|.... .|..|--.+...++|.+|-.+
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 55555555432 3333 33333333333323 444444445667777777653
No 494
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.98 E-value=2.9e+02 Score=23.66 Aligned_cols=110 Identities=13% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHhHHhcC--------CCcCHHHHHHHHHHHH-hcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 017414 198 YFNIMKSRYG--------IEPKIEQYGCMIDLLG-RAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 198 ~~~~~~~~~~--------~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
+|+-+.++ + ++.|...++.|+.--- +...++++++-.++. |-.-....+..+..-|++.++.+.+.+.+
T Consensus 60 lYkyL~E~-~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~ 138 (412)
T COG5187 60 LYKYLAEK-GNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWM 138 (412)
T ss_pred HHHHHHhc-cCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHHHH------hCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 268 QHLIK------LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 268 ~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
++..+ ..-+-.-+-..|+..|....-.++-++..+.|.+.|
T Consensus 139 ~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 139 RRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
No 495
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.87 E-value=2.2e+02 Score=24.97 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=32.5
Q ss_pred HHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 228 LQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 228 ~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
.++++.++..+ ..-|+ +..|..++......|.++.++.+|+++...+.
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agA 171 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGA 171 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Confidence 45677777755 22343 34567777777778888888888888887663
No 496
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.78 E-value=3.4e+02 Score=24.40 Aligned_cols=197 Identities=9% Similarity=-0.018 Sum_probs=97.7
Q ss_pred HHhCCCccHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCC
Q 017414 50 YAQMDQPNEAITLFRRMQVENVKPDEIA--MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVP--LNNALIDMYAKSGK 125 (372)
Q Consensus 50 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 125 (372)
.+..|+.+- ++.+.+.|..|+... ..+.+..++..|+.+- .+.+.+.|..|+.. ...+.+...+..|+
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 455666644 444556677776543 2345556667777764 44455566555422 11234566678899
Q ss_pred HHHHHHHHHhcccC----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHhcccCchHHHHHH
Q 017414 126 IGKALQVFENMKNK----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEI---TFIAILSACCHVGLVELGRRY 198 (372)
Q Consensus 126 ~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~ 198 (372)
.+.+..+++.-... +....+. +...+..|+.+ +++.+.+.|..|+.. -.+.+ ...+..|+.+-+..+
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpL-h~A~~~~~~~~v~~L 154 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKLD----IMKLLIARGADPDIPNTDKFSPL-HLAVMMGDIKGIELL 154 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHH
Confidence 98888888754321 1112222 33344566654 445555666655432 12222 333456776655544
Q ss_pred HHHhHHhcCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH---HHHHHHHHHHHcCChhHHHHHH
Q 017414 199 FNIMKSRYGIEPK---IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAA---IWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 199 ~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
++. |..++ ..-.+.|. ..+..|+.+-+.-+++.- ..++.. ....++......|+.+-+.-++
T Consensus 155 l~~-----g~~~~~~d~~g~TpL~-~A~~~g~~eiv~~Ll~~g-a~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll 222 (413)
T PHA02875 155 IDH-----KACLDIEDCCGCTPLI-IAMAKGDIAICKMLLDSG-ANIDYFGKNGCVAALCYAIENNKIDIVRLFI 222 (413)
T ss_pred Hhc-----CCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhCC-CCCCcCCCCCCchHHHHHHHcCCHHHHHHHH
Confidence 432 33332 12222333 334567776665555543 233221 1123444345566655444333
No 497
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.64 E-value=80 Score=22.11 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC
Q 017414 15 MVAGYAKVGDLNNARALFELMTEK 38 (372)
Q Consensus 15 l~~~~~~~~~~~~A~~~~~~~~~~ 38 (372)
++.-|...|+.++|...+.++..|
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHhcCCCHHHHHHHHHHhCCC
Confidence 334444445555555555554433
No 498
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.57 E-value=9e+02 Score=29.19 Aligned_cols=87 Identities=11% Similarity=0.129 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHH---HHHHH---HHHHHc-CChhHHHHHHHHHHHhC-C--CCcchHHHHHHHH
Q 017414 219 IDLLGRAGYLQEAEKLLRRMPFEANAAI---WGSLL---AASNIY-GDVELGECALQHLIKLE-P--HNSGNYAILSNIY 288 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~l~---~~~~~~-~~~~~a~~~~~~~~~~~-p--~~~~~~~~l~~~~ 288 (372)
.....+.|-++.+...+.++-.-|+... +..+- .++... +....+.++.+..--.. + .....|..-+...
T Consensus 2743 akvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~ 2822 (3550)
T KOG0889|consen 2743 AKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFL 2822 (3550)
T ss_pred HHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHH
Confidence 3344456777777777777722344332 22221 122221 23334444433322111 1 1334566667788
Q ss_pred HHcCCchhHHHHHHHHH
Q 017414 289 AILGRWNESGKIRKVMR 305 (372)
Q Consensus 289 ~~~g~~~~a~~~~~~m~ 305 (372)
.+.|+.++|.+.|....
T Consensus 2823 ~kL~~~eeAn~~fs~Av 2839 (3550)
T KOG0889|consen 2823 EKLGKFEEANKAFSAAV 2839 (3550)
T ss_pred HHhcCcchhHHHHHHHH
Confidence 89999999999888764
No 499
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.52 E-value=1.4e+02 Score=20.00 Aligned_cols=41 Identities=10% Similarity=0.103 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 017414 96 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENM 136 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 136 (372)
++|+.....|+..|+.+|..+++...-.=-.+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45555555555555555555555444443444444444443
No 500
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.23 E-value=1.7e+02 Score=20.85 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=23.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL 116 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (372)
++.-+.++...++|+++++.|.+.| ..+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4444566777888888888888877 5554444433
Done!