Query 017414
Match_columns 372
No_of_seqs 458 out of 2731
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 14:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.8E-31 6.1E-36 241.5 22.4 197 28-225 9-223 (501)
2 2xpi_A Anaphase-promoting comp 100.0 3.2E-30 1.1E-34 241.3 26.9 293 10-307 273-579 (597)
3 2xpi_A Anaphase-promoting comp 100.0 3.1E-30 1E-34 241.4 24.8 338 10-360 118-514 (597)
4 4g26_A Pentatricopeptide repea 100.0 3.6E-30 1.2E-34 233.0 22.1 199 58-257 8-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-26 7.9E-31 203.7 33.9 296 5-305 29-332 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.9E-25 9.9E-30 196.6 32.0 299 3-306 61-367 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 5E-25 1.7E-29 198.8 33.8 301 2-307 19-358 (450)
8 3ieg_A DNAJ homolog subfamily 99.9 2.8E-22 9.6E-27 175.0 33.6 295 8-307 2-335 (359)
9 2y4t_A DNAJ homolog subfamily 99.9 4.6E-23 1.6E-27 186.0 28.4 295 3-304 54-406 (450)
10 2gw1_A Mitochondrial precursor 99.9 1E-21 3.5E-26 180.0 27.3 295 8-307 5-401 (514)
11 3hym_B Cell division cycle pro 99.9 1.9E-21 6.4E-26 167.9 27.0 286 6-294 19-321 (330)
12 2gw1_A Mitochondrial precursor 99.9 2.5E-21 8.4E-26 177.5 28.7 225 78-307 240-478 (514)
13 1fch_A Peroxisomal targeting s 99.9 4E-21 1.4E-25 168.6 25.5 281 18-302 34-354 (368)
14 3hym_B Cell division cycle pro 99.9 2.1E-20 7.2E-25 161.2 27.0 264 38-306 20-298 (330)
15 3ieg_A DNAJ homolog subfamily 99.9 4.3E-20 1.5E-24 161.1 28.8 283 3-291 31-353 (359)
16 3fp2_A TPR repeat-containing p 99.9 5.4E-20 1.8E-24 169.6 28.7 299 3-308 53-492 (537)
17 3fp2_A TPR repeat-containing p 99.9 5.9E-20 2E-24 169.4 28.3 295 8-308 24-408 (537)
18 3mkr_A Coatomer subunit epsilo 99.9 2.6E-19 9E-24 151.5 28.5 272 16-301 6-288 (291)
19 4eqf_A PEX5-related protein; a 99.9 2.3E-20 8E-25 163.6 21.8 261 39-303 64-352 (365)
20 3cv0_A Peroxisome targeting si 99.9 1.2E-19 4.2E-24 156.2 22.3 259 41-304 22-312 (327)
21 1fch_A Peroxisomal targeting s 99.8 1.4E-19 4.6E-24 158.8 21.6 279 20-307 12-314 (368)
22 4eqf_A PEX5-related protein; a 99.8 5.3E-20 1.8E-24 161.3 17.7 259 7-270 63-353 (365)
23 1b89_A Protein (clathrin heavy 99.8 1.5E-20 5E-25 163.2 10.5 251 20-302 14-264 (449)
24 3cv0_A Peroxisome targeting si 99.8 2.7E-19 9.1E-24 154.1 18.0 261 8-273 20-315 (327)
25 3mkr_A Coatomer subunit epsilo 99.8 1.8E-18 6.1E-23 146.4 22.3 246 47-307 6-264 (291)
26 1b89_A Protein (clathrin heavy 99.8 8.5E-20 2.9E-24 158.4 10.1 266 8-301 31-305 (449)
27 3uq3_A Heat shock protein STI1 99.8 2.8E-17 9.5E-22 136.4 19.6 219 42-304 7-233 (258)
28 3uq3_A Heat shock protein STI1 99.8 1E-16 3.5E-21 132.9 23.0 188 111-308 6-203 (258)
29 4g1t_A Interferon-induced prot 99.8 2.7E-16 9.2E-21 142.6 24.6 307 5-317 90-469 (472)
30 3spa_A Mtrpol, DNA-directed RN 99.8 6.8E-19 2.3E-23 164.8 7.4 147 9-155 127-286 (1134)
31 2pl2_A Hypothetical conserved 99.8 1.1E-16 3.9E-21 129.4 19.5 195 107-304 2-211 (217)
32 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.7E-16 5.7E-21 133.1 20.3 242 51-301 16-269 (275)
33 3u4t_A TPR repeat-containing p 99.7 2.6E-16 9E-21 131.7 20.6 244 13-291 7-268 (272)
34 3spa_A Mtrpol, DNA-directed RN 99.7 4.3E-18 1.5E-22 159.4 9.0 125 109-234 126-258 (1134)
35 2xm6_A Protein corresponding t 99.7 3.7E-14 1.3E-18 129.2 34.8 253 7-272 37-324 (490)
36 2xm6_A Protein corresponding t 99.7 2.4E-14 8.3E-19 130.4 33.5 287 7-308 73-397 (490)
37 2ooe_A Cleavage stimulation fa 99.7 8E-15 2.7E-19 135.0 29.8 201 142-352 273-494 (530)
38 2h6f_A Protein farnesyltransfe 99.7 1.1E-15 3.9E-20 133.6 22.5 247 40-291 97-366 (382)
39 2pl2_A Hypothetical conserved 99.7 6.8E-16 2.3E-20 124.8 19.5 192 41-238 6-211 (217)
40 3u4t_A TPR repeat-containing p 99.7 3.8E-15 1.3E-19 124.7 23.1 200 3-204 31-249 (272)
41 2ho1_A Type 4 fimbrial biogene 99.7 7.1E-15 2.4E-19 121.5 24.0 200 78-280 40-245 (252)
42 1ouv_A Conserved hypothetical 99.7 2.3E-14 7.8E-19 120.1 26.7 223 40-276 6-254 (273)
43 2q7f_A YRRB protein; TPR, prot 99.7 9E-16 3.1E-20 126.1 17.6 207 78-288 26-237 (243)
44 1xnf_A Lipoprotein NLPI; TPR, 99.7 9.9E-16 3.4E-20 128.3 17.9 240 19-267 15-269 (275)
45 2h6f_A Protein farnesyltransfe 99.7 5E-15 1.7E-19 129.5 22.4 246 4-255 92-364 (382)
46 2vq2_A PILW, putative fimbrial 99.7 1.5E-14 5.1E-19 117.2 23.4 202 77-281 10-219 (225)
47 1ouv_A Conserved hypothetical 99.7 5.2E-14 1.8E-18 118.0 27.1 225 74-310 5-254 (273)
48 2ho1_A Type 4 fimbrial biogene 99.7 1.2E-14 4.2E-19 120.1 23.0 202 40-246 37-244 (252)
49 3sf4_A G-protein-signaling mod 99.7 4.5E-16 1.5E-20 138.0 14.9 292 5-296 5-365 (406)
50 3sf4_A G-protein-signaling mod 99.7 2.6E-15 8.9E-20 133.1 19.4 267 39-306 8-335 (406)
51 4a1s_A PINS, partner of inscut 99.7 1.4E-15 4.6E-20 135.4 17.5 265 42-307 50-372 (411)
52 2ooe_A Cleavage stimulation fa 99.7 1.5E-13 5.1E-18 126.5 31.1 194 109-307 271-492 (530)
53 4g1t_A Interferon-induced prot 99.7 3.7E-14 1.3E-18 128.5 26.6 297 7-307 49-401 (472)
54 2vq2_A PILW, putative fimbrial 99.7 2.1E-14 7E-19 116.3 22.2 199 107-307 5-211 (225)
55 3ro2_A PINS homolog, G-protein 99.7 3.2E-15 1.1E-19 128.7 18.1 263 44-307 9-332 (338)
56 2q7f_A YRRB protein; TPR, prot 99.7 5.1E-15 1.7E-19 121.6 17.8 197 108-307 21-222 (243)
57 4a1s_A PINS, partner of inscut 99.6 5.3E-15 1.8E-19 131.5 15.6 268 8-275 47-374 (411)
58 3ro2_A PINS homolog, G-protein 99.6 1.1E-14 3.7E-19 125.3 16.6 268 8-275 4-334 (338)
59 1xi4_A Clathrin heavy chain; a 99.6 5E-13 1.7E-17 129.6 29.2 264 8-299 1104-1376(1630)
60 4abn_A Tetratricopeptide repea 99.6 1E-14 3.4E-19 132.1 16.5 208 91-303 84-317 (474)
61 1xi4_A Clathrin heavy chain; a 99.6 7.5E-13 2.6E-17 128.4 29.7 259 13-301 1053-1336(1630)
62 3vtx_A MAMA; tetratricopeptide 99.6 1.1E-13 3.8E-18 108.6 19.8 165 140-307 4-170 (184)
63 2ond_A Cleavage stimulation fa 99.6 1.2E-13 4.2E-18 117.9 20.7 183 92-277 81-274 (308)
64 3ulq_A Response regulator aspa 99.6 2.9E-14 1E-18 125.6 17.1 286 18-306 21-367 (383)
65 2ond_A Cleavage stimulation fa 99.6 1.3E-12 4.3E-17 111.5 26.5 228 7-238 6-267 (308)
66 3nf1_A KLC 1, kinesin light ch 99.6 1.6E-14 5.6E-19 123.0 11.1 241 40-305 27-305 (311)
67 3vtx_A MAMA; tetratricopeptide 99.6 4.6E-13 1.6E-17 105.0 18.4 161 8-170 4-170 (184)
68 3e4b_A ALGK; tetratricopeptide 99.5 3.3E-13 1.1E-17 121.4 19.3 168 130-307 165-351 (452)
69 1hz4_A MALT regulatory protein 99.5 1.3E-11 4.5E-16 108.2 27.6 264 43-306 17-321 (373)
70 3q15_A PSP28, response regulat 99.5 5.1E-13 1.7E-17 117.5 17.7 300 6-306 7-364 (378)
71 3nf1_A KLC 1, kinesin light ch 99.5 5E-14 1.7E-18 120.0 10.9 249 5-275 23-309 (311)
72 4abn_A Tetratricopeptide repea 99.5 6.3E-13 2.2E-17 120.3 17.5 208 56-268 84-316 (474)
73 4gyw_A UDP-N-acetylglucosamine 99.5 7.8E-13 2.7E-17 124.6 18.5 162 141-305 9-172 (723)
74 3ulq_A Response regulator aspa 99.5 4.7E-12 1.6E-16 111.5 21.4 230 45-274 108-369 (383)
75 3as5_A MAMA; tetratricopeptide 99.5 3.1E-12 1E-16 100.0 17.5 158 112-306 10-172 (186)
76 3as5_A MAMA; tetratricopeptide 99.5 1E-11 3.6E-16 96.9 19.6 160 8-169 7-172 (186)
77 4i17_A Hypothetical protein; T 99.5 7.8E-12 2.7E-16 101.6 19.0 204 73-287 5-223 (228)
78 1hz4_A MALT regulatory protein 99.5 2.4E-11 8.3E-16 106.4 23.2 263 11-274 16-323 (373)
79 3e4b_A ALGK; tetratricopeptide 99.5 1.3E-12 4.5E-17 117.4 15.3 279 14-305 8-314 (452)
80 4gyw_A UDP-N-acetylglucosamine 99.4 2.8E-12 9.7E-17 120.9 17.3 163 5-169 5-173 (723)
81 4i17_A Hypothetical protein; T 99.4 4.5E-12 1.5E-16 103.0 16.1 190 108-307 5-209 (228)
82 3q15_A PSP28, response regulat 99.4 6.8E-11 2.3E-15 103.9 20.5 230 43-273 104-365 (378)
83 3edt_B KLC 2, kinesin light ch 99.3 7.1E-12 2.4E-16 104.9 12.2 153 51-203 12-196 (283)
84 1qqe_A Vesicular transport pro 99.3 2.7E-11 9.2E-16 102.4 15.3 191 85-275 47-271 (292)
85 3mv2_B Coatomer subunit epsilo 99.3 6.7E-10 2.3E-14 92.6 22.8 241 17-279 21-288 (310)
86 1qqe_A Vesicular transport pro 99.3 1.6E-10 5.4E-15 97.7 18.1 206 24-243 32-272 (292)
87 3mv2_B Coatomer subunit epsilo 99.3 4.5E-10 1.5E-14 93.6 20.1 239 48-308 21-283 (310)
88 3edt_B KLC 2, kinesin light ch 99.3 6.7E-11 2.3E-15 98.9 15.4 150 20-169 12-197 (283)
89 3qky_A Outer membrane assembly 99.3 4.7E-10 1.6E-14 93.0 20.3 207 108-354 13-248 (261)
90 3qky_A Outer membrane assembly 99.3 1.7E-10 5.9E-15 95.7 17.0 203 72-296 12-250 (261)
91 2yhc_A BAMD, UPF0169 lipoprote 99.2 8.8E-10 3E-14 89.2 18.8 184 110-310 4-216 (225)
92 4ga2_A E3 SUMO-protein ligase 99.2 1.9E-11 6.6E-16 92.3 6.9 142 148-293 4-149 (150)
93 2fo7_A Synthetic consensus TPR 99.2 5.9E-10 2E-14 81.8 14.6 123 182-306 7-131 (136)
94 2fo7_A Synthetic consensus TPR 99.2 1E-09 3.5E-14 80.4 15.7 131 143-276 3-135 (136)
95 3qou_A Protein YBBN; thioredox 99.2 9.6E-10 3.3E-14 92.5 16.3 176 126-305 102-282 (287)
96 2pzi_A Probable serine/threoni 99.2 1.3E-09 4.5E-14 103.0 18.7 166 86-256 402-580 (681)
97 3urz_A Uncharacterized protein 99.2 1.1E-09 3.8E-14 87.5 15.4 127 116-246 60-192 (208)
98 3urz_A Uncharacterized protein 99.2 1.4E-09 4.7E-14 86.9 15.9 158 10-169 5-185 (208)
99 2r5s_A Uncharacterized protein 99.2 1E-09 3.4E-14 85.2 14.7 157 10-169 7-172 (176)
100 2pzi_A Probable serine/threoni 99.2 2E-09 6.9E-14 101.7 19.4 169 121-293 402-583 (681)
101 3rjv_A Putative SEL1 repeat pr 99.1 8.3E-09 2.8E-13 82.6 19.7 173 129-310 5-200 (212)
102 2ifu_A Gamma-SNAP; membrane fu 99.1 1.1E-09 3.8E-14 93.1 15.4 179 118-299 44-253 (307)
103 4ga2_A E3 SUMO-protein ligase 99.1 4.1E-10 1.4E-14 84.9 10.5 122 182-306 3-128 (150)
104 2r5s_A Uncharacterized protein 99.1 8.2E-10 2.8E-14 85.7 12.0 75 231-305 93-171 (176)
105 2vsy_A XCC0866; transferase, g 99.1 2E-09 6.7E-14 99.9 15.8 160 123-285 2-169 (568)
106 1hh8_A P67PHOX, NCF-2, neutrop 99.1 5.2E-09 1.8E-13 83.7 16.3 129 8-138 5-149 (213)
107 3dra_A Protein farnesyltransfe 99.1 2E-07 6.8E-12 78.4 26.3 229 52-285 44-300 (306)
108 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.6E-09 1.9E-13 84.5 16.1 185 74-279 3-219 (225)
109 4e6h_A MRNA 3'-END-processing 99.1 1.3E-07 4.3E-12 88.5 27.2 134 4-137 61-221 (679)
110 3qou_A Protein YBBN; thioredox 99.1 8.1E-09 2.8E-13 86.8 17.4 160 108-271 115-282 (287)
111 4e6h_A MRNA 3'-END-processing 99.1 2.1E-08 7.1E-13 93.7 21.0 216 58-278 327-575 (679)
112 2vsy_A XCC0866; transferase, g 99.1 4.6E-09 1.6E-13 97.4 16.6 147 88-238 2-154 (568)
113 3dra_A Protein farnesyltransfe 99.0 8.3E-08 2.8E-12 80.7 22.2 214 89-306 47-286 (306)
114 3rjv_A Putative SEL1 repeat pr 99.0 1.7E-08 5.8E-13 80.8 17.1 169 28-205 5-197 (212)
115 2ifu_A Gamma-SNAP; membrane fu 99.0 2.5E-09 8.6E-14 90.9 12.9 197 87-305 3-222 (307)
116 3gyz_A Chaperone protein IPGC; 99.0 2.6E-09 8.8E-14 80.3 10.3 98 211-308 35-134 (151)
117 2qfc_A PLCR protein; TPR, HTH, 99.0 3.4E-08 1.2E-12 83.3 17.7 163 143-305 77-264 (293)
118 3u3w_A Transcriptional activat 99.0 1.4E-07 4.7E-12 79.5 21.5 159 147-305 81-264 (293)
119 4gco_A Protein STI-1; structur 99.0 9.7E-09 3.3E-13 74.7 11.8 109 177-287 14-124 (126)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.9E-08 1E-12 79.2 15.3 123 180-307 10-150 (213)
121 4gco_A Protein STI-1; structur 98.9 1.1E-08 3.7E-13 74.5 11.4 110 4-115 8-120 (126)
122 1a17_A Serine/threonine protei 98.9 2.7E-08 9.1E-13 75.9 13.9 127 177-305 14-144 (166)
123 2vgx_A Chaperone SYCD; alterna 98.9 7.6E-09 2.6E-13 77.6 9.5 97 211-307 20-118 (148)
124 4f3v_A ESX-1 secretion system 98.9 8.4E-08 2.9E-12 78.9 16.3 192 87-284 18-247 (282)
125 2vyi_A SGTA protein; chaperone 98.9 4.1E-08 1.4E-12 71.3 13.1 118 176-295 12-131 (131)
126 2c2l_A CHIP, carboxy terminus 98.9 6.3E-09 2.2E-13 87.2 9.8 95 41-137 5-99 (281)
127 2qfc_A PLCR protein; TPR, HTH, 98.9 1.2E-07 4.2E-12 79.8 17.8 162 111-272 76-265 (293)
128 3u3w_A Transcriptional activat 98.9 3.3E-08 1.1E-12 83.4 14.1 194 6-204 43-265 (293)
129 2lni_A Stress-induced-phosphop 98.9 4.3E-08 1.5E-12 71.6 13.0 117 175-293 15-133 (133)
130 1na0_A Designed protein CTPR3; 98.9 6E-08 2.1E-12 69.7 13.6 115 176-292 9-125 (125)
131 1na0_A Designed protein CTPR3; 98.8 7.4E-08 2.5E-12 69.3 12.9 111 9-121 9-122 (125)
132 3gw4_A Uncharacterized protein 98.8 2.9E-08 1E-12 78.5 11.4 148 20-167 3-173 (203)
133 2lni_A Stress-induced-phosphop 98.8 7.5E-08 2.6E-12 70.2 12.8 98 6-104 13-113 (133)
134 2uy1_A Cleavage stimulation fa 98.8 3.1E-06 1E-10 76.6 25.8 322 10-355 16-418 (493)
135 2e2e_A Formate-dependent nitri 98.8 3.3E-08 1.1E-12 76.5 10.9 119 187-307 21-144 (177)
136 3q7a_A Farnesyltransferase alp 98.8 6.1E-06 2.1E-10 70.2 25.5 232 48-284 62-343 (349)
137 2c2l_A CHIP, carboxy terminus 98.8 7.2E-09 2.5E-13 86.9 7.5 50 257-306 148-198 (281)
138 1p5q_A FKBP52, FK506-binding p 98.8 3.7E-08 1.3E-12 84.8 11.8 94 212-305 196-292 (336)
139 2vyi_A SGTA protein; chaperone 98.8 5.2E-08 1.8E-12 70.7 11.0 117 7-125 10-129 (131)
140 3gyz_A Chaperone protein IPGC; 98.8 2.6E-08 8.8E-13 74.8 9.1 122 10-138 10-132 (151)
141 2fbn_A 70 kDa peptidylprolyl i 98.8 6.6E-09 2.3E-13 82.2 6.1 170 117-307 11-186 (198)
142 1a17_A Serine/threonine protei 98.8 1.3E-07 4.4E-12 72.0 13.2 125 42-168 15-144 (166)
143 2xcb_A PCRH, regulatory protei 98.8 6.8E-08 2.3E-12 71.8 11.1 96 212-307 18-115 (142)
144 3gw4_A Uncharacterized protein 98.8 3.9E-07 1.3E-11 71.9 16.2 25 179-203 110-134 (203)
145 4f3v_A ESX-1 secretion system 98.8 1.8E-07 6.1E-12 77.0 14.1 129 113-243 105-240 (282)
146 3upv_A Heat shock protein STI1 98.8 1.1E-07 3.8E-12 68.9 11.3 96 212-307 4-101 (126)
147 2vgx_A Chaperone SYCD; alterna 98.7 2.8E-08 9.4E-13 74.5 7.6 104 176-281 21-126 (148)
148 3dss_A Geranylgeranyl transfer 98.7 6.9E-06 2.4E-10 69.5 22.6 241 41-288 27-319 (331)
149 1p5q_A FKBP52, FK506-binding p 98.7 1.1E-07 3.9E-12 81.7 11.7 145 23-168 127-292 (336)
150 3q49_B STIP1 homology and U bo 98.7 3.1E-07 1.1E-11 67.5 12.3 98 210-307 7-106 (137)
151 2kck_A TPR repeat; tetratricop 98.7 1.4E-07 4.6E-12 66.4 9.9 97 212-308 6-107 (112)
152 3q7a_A Farnesyltransferase alp 98.7 3.4E-06 1.2E-10 71.8 19.9 225 85-314 64-337 (349)
153 2xcb_A PCRH, regulatory protei 98.7 1.1E-07 3.8E-12 70.6 9.8 94 42-137 20-113 (142)
154 1elw_A TPR1-domain of HOP; HOP 98.7 4.4E-07 1.5E-11 64.4 12.4 109 177-287 5-115 (118)
155 2e2e_A Formate-dependent nitri 98.7 2.3E-07 8E-12 71.6 11.7 127 152-281 21-152 (177)
156 3sz7_A HSC70 cochaperone (SGT) 98.7 2.5E-07 8.4E-12 70.6 11.3 109 175-285 10-120 (164)
157 1hxi_A PEX5, peroxisome target 98.6 1.9E-07 6.4E-12 67.2 9.5 94 214-307 19-114 (121)
158 3upv_A Heat shock protein STI1 98.6 4E-07 1.4E-11 65.9 11.4 110 177-288 5-122 (126)
159 2dba_A Smooth muscle cell asso 98.6 8.7E-07 3E-11 65.8 13.6 111 175-288 27-143 (148)
160 2dba_A Smooth muscle cell asso 98.6 6.6E-07 2.3E-11 66.5 12.8 98 210-307 26-128 (148)
161 3sz7_A HSC70 cochaperone (SGT) 98.6 5.6E-07 1.9E-11 68.5 12.4 95 141-238 11-105 (164)
162 2fbn_A 70 kDa peptidylprolyl i 98.6 7.3E-08 2.5E-12 76.1 7.5 146 13-159 8-174 (198)
163 1elw_A TPR1-domain of HOP; HOP 98.6 5.7E-07 2E-11 63.8 11.6 97 211-307 3-101 (118)
164 4gcn_A Protein STI-1; structur 98.6 2.5E-07 8.4E-12 67.3 9.6 94 213-306 9-111 (127)
165 4b4t_Q 26S proteasome regulato 98.6 1.2E-06 4.1E-11 78.0 15.8 162 144-305 58-243 (434)
166 2kck_A TPR repeat; tetratricop 98.6 3.9E-07 1.3E-11 64.0 9.7 98 6-104 3-106 (112)
167 4b4t_Q 26S proteasome regulato 98.6 2E-05 6.8E-10 70.0 22.9 189 16-204 11-244 (434)
168 4gcn_A Protein STI-1; structur 98.6 1.3E-06 4.5E-11 63.3 12.4 27 144-170 86-112 (127)
169 3q49_B STIP1 homology and U bo 98.5 8.9E-07 3.1E-11 64.9 10.9 101 174-276 7-109 (137)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.1E-06 3.9E-11 78.8 13.4 128 178-305 270-413 (457)
171 1wao_1 Serine/threonine protei 98.5 4.9E-07 1.7E-11 81.6 11.0 118 183-302 13-134 (477)
172 3dss_A Geranylgeranyl transfer 98.5 4.5E-05 1.6E-09 64.5 22.2 218 86-307 40-304 (331)
173 1elr_A TPR2A-domain of HOP; HO 98.5 6.2E-07 2.1E-11 64.9 9.4 109 178-289 6-123 (131)
174 2xev_A YBGF; tetratricopeptide 98.5 8.6E-07 2.9E-11 64.3 9.7 94 183-278 9-110 (129)
175 2hr2_A Hypothetical protein; a 98.5 9E-07 3.1E-11 65.9 9.6 91 216-306 15-130 (159)
176 2uy1_A Cleavage stimulation fa 98.5 3.1E-05 1.1E-09 70.1 21.5 289 4-305 80-411 (493)
177 2xev_A YBGF; tetratricopeptide 98.5 3.1E-06 1.1E-10 61.2 12.1 91 145-238 6-102 (129)
178 1wao_1 Serine/threonine protei 98.5 3.4E-06 1.2E-10 76.1 14.6 118 116-236 12-134 (477)
179 3rkv_A Putative peptidylprolyl 98.5 2.8E-06 9.5E-11 64.4 12.1 62 245-306 64-125 (162)
180 1hxi_A PEX5, peroxisome target 98.4 1.6E-06 5.6E-11 62.2 9.9 93 43-137 20-112 (121)
181 1elr_A TPR2A-domain of HOP; HO 98.4 1.5E-06 5.3E-11 62.8 9.6 96 212-307 4-108 (131)
182 1ihg_A Cyclophilin 40; ppiase 98.4 2.8E-06 9.7E-11 73.9 12.5 89 211-299 272-362 (370)
183 3rkv_A Putative peptidylprolyl 98.4 1.2E-06 4E-11 66.6 8.4 79 211-289 62-143 (162)
184 3ro3_A PINS homolog, G-protein 98.4 3.6E-06 1.2E-10 63.2 11.2 128 179-306 12-157 (164)
185 3k9i_A BH0479 protein; putativ 98.4 4.6E-07 1.6E-11 64.7 5.7 90 189-279 3-96 (117)
186 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.5E-06 8.5E-11 76.6 11.4 145 22-168 247-413 (457)
187 3k9i_A BH0479 protein; putativ 98.4 1.3E-06 4.4E-11 62.3 7.8 82 155-238 4-87 (117)
188 2if4_A ATFKBP42; FKBP-like, al 98.4 8.1E-07 2.8E-11 76.4 7.8 144 143-306 181-327 (338)
189 3ro3_A PINS homolog, G-protein 98.4 2.9E-06 9.8E-11 63.8 9.9 95 179-273 52-158 (164)
190 2if4_A ATFKBP42; FKBP-like, al 98.3 3.2E-06 1.1E-10 72.7 9.7 152 110-278 179-333 (338)
191 3n71_A Histone lysine methyltr 98.3 9.2E-06 3.2E-10 73.0 12.7 124 185-308 318-465 (490)
192 1ihg_A Cyclophilin 40; ppiase 98.3 8.3E-06 2.8E-10 70.9 11.8 117 11-129 225-360 (370)
193 1dce_A Protein (RAB geranylger 98.2 0.0001 3.4E-09 67.9 19.2 137 157-296 89-244 (567)
194 2hr2_A Hypothetical protein; a 98.2 1.9E-06 6.6E-11 64.1 6.3 71 214-284 59-142 (159)
195 2l6j_A TPR repeat-containing p 98.2 5.6E-06 1.9E-10 58.0 7.8 92 211-302 3-102 (111)
196 1na3_A Designed protein CTPR2; 98.2 1.6E-05 5.6E-10 53.2 9.3 81 212-292 9-91 (91)
197 3ma5_A Tetratricopeptide repea 98.1 1.9E-05 6.4E-10 54.4 9.1 64 243-306 6-69 (100)
198 2kat_A Uncharacterized protein 98.1 3.2E-05 1.1E-09 54.6 9.6 76 231-306 4-81 (115)
199 2l6j_A TPR repeat-containing p 98.1 4.7E-06 1.6E-10 58.4 4.9 93 41-135 5-103 (111)
200 3n71_A Histone lysine methyltr 98.0 3.4E-05 1.2E-09 69.4 11.0 63 143-205 395-464 (490)
201 2kat_A Uncharacterized protein 97.9 0.00014 4.7E-09 51.2 10.1 78 58-137 3-80 (115)
202 1zu2_A Mitochondrial import re 97.9 1.2E-05 4.1E-10 59.7 4.4 82 226-307 16-120 (158)
203 3bee_A Putative YFRE protein; 97.9 0.00014 4.9E-09 49.0 9.4 69 241-309 3-74 (93)
204 1na3_A Designed protein CTPR2; 97.9 0.00015 5.1E-09 48.3 9.6 78 42-121 11-88 (91)
205 1klx_A Cysteine rich protein B 97.8 0.00038 1.3E-08 50.9 12.3 109 55-171 10-127 (138)
206 1dce_A Protein (RAB geranylger 97.8 0.0012 4.3E-08 60.6 18.0 174 52-230 40-244 (567)
207 1klx_A Cysteine rich protein B 97.8 0.00046 1.6E-08 50.5 11.6 110 155-273 9-126 (138)
208 3qwp_A SET and MYND domain-con 97.7 0.00049 1.7E-08 60.9 13.4 116 219-352 294-427 (429)
209 1zu2_A Mitochondrial import re 97.7 4.1E-05 1.4E-09 56.8 5.2 111 190-309 16-149 (158)
210 1pc2_A Mitochondria fission pr 97.6 0.00076 2.6E-08 49.5 9.9 86 191-278 13-105 (152)
211 3ma5_A Tetratricopeptide repea 97.6 0.00059 2E-08 46.6 9.1 60 75-135 7-66 (100)
212 3qww_A SET and MYND domain-con 97.5 0.0005 1.7E-08 60.7 10.1 93 188-280 310-423 (433)
213 3qww_A SET and MYND domain-con 97.5 0.00044 1.5E-08 61.1 9.2 83 224-306 310-410 (433)
214 2kc7_A BFR218_protein; tetratr 97.4 0.0015 5.1E-08 44.2 9.6 64 218-281 6-72 (99)
215 3ly7_A Transcriptional activat 97.4 0.0046 1.6E-07 52.7 13.9 69 209-277 274-343 (372)
216 3qwp_A SET and MYND domain-con 97.4 0.0021 7.1E-08 56.9 12.2 101 182-282 293-414 (429)
217 2kc7_A BFR218_protein; tetratr 97.3 0.00077 2.6E-08 45.7 7.4 58 250-307 6-64 (99)
218 3mkq_A Coatomer beta'-subunit; 97.3 0.011 3.6E-07 57.0 17.4 47 120-168 662-708 (814)
219 1wy6_A Hypothetical protein ST 97.3 0.025 8.4E-07 40.1 14.8 141 151-310 17-157 (172)
220 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0049 1.7E-07 42.3 9.3 74 211-284 4-86 (104)
221 3mkq_A Coatomer beta'-subunit; 97.1 0.0063 2.2E-07 58.6 13.2 154 119-304 608-762 (814)
222 3ly7_A Transcriptional activat 97.1 0.007 2.4E-07 51.6 11.7 60 142-203 278-337 (372)
223 3mkq_B Coatomer subunit alpha; 96.8 0.1 3.4E-06 39.3 15.8 105 16-137 12-116 (177)
224 1pc2_A Mitochondria fission pr 96.8 0.0087 3E-07 43.9 8.6 83 157-242 14-102 (152)
225 1nzn_A CGI-135 protein, fissio 96.7 0.015 5E-07 41.1 8.7 92 188-281 13-111 (126)
226 3u64_A Protein TP_0956; tetrat 96.6 0.0087 3E-07 49.0 8.5 87 228-314 179-276 (301)
227 3bee_A Putative YFRE protein; 96.6 0.014 4.9E-07 39.0 8.4 68 209-276 3-75 (93)
228 1qsa_A Protein (soluble lytic 96.6 0.44 1.5E-05 44.0 23.4 113 156-272 229-347 (618)
229 3lvg_A Clathrin heavy chain 1; 96.6 0.00017 5.8E-09 62.9 -1.9 237 8-264 53-324 (624)
230 3mkq_B Coatomer subunit alpha; 96.3 0.24 8.1E-06 37.3 15.7 130 117-270 12-141 (177)
231 2v5f_A Prolyl 4-hydroxylase su 96.2 0.031 1.1E-06 38.2 8.3 66 242-307 3-75 (104)
232 3lvg_A Clathrin heavy chain 1; 96.1 2.5E-07 8.4E-12 80.2 -21.9 242 39-303 53-316 (624)
233 1nzn_A CGI-135 protein, fissio 96.0 0.11 3.9E-06 36.5 10.2 90 150-242 10-105 (126)
234 1y8m_A FIS1; mitochondria, unk 95.8 0.32 1.1E-05 34.9 13.2 25 253-277 86-110 (144)
235 1wy6_A Hypothetical protein ST 95.8 0.32 1.1E-05 34.6 12.4 83 124-209 75-157 (172)
236 4h7y_A Dual specificity protei 95.6 0.084 2.9E-06 38.3 8.4 60 225-285 73-135 (161)
237 3o48_A Mitochondria fission 1 95.3 0.25 8.4E-06 35.0 9.7 63 242-304 38-104 (134)
238 4fhn_B Nucleoporin NUP120; pro 95.1 0.76 2.6E-05 46.1 16.6 163 13-193 816-988 (1139)
239 4gns_B Protein CSD3, chitin bi 95.1 0.11 3.8E-06 48.9 9.9 123 179-304 251-397 (754)
240 3u64_A Protein TP_0956; tetrat 94.9 0.098 3.4E-06 42.8 7.8 90 25-114 179-281 (301)
241 4h7y_A Dual specificity protei 94.9 0.28 9.5E-06 35.6 9.1 100 211-310 12-126 (161)
242 2ff4_A Probable regulatory pro 94.4 0.13 4.4E-06 44.7 8.0 68 248-315 175-247 (388)
243 4ady_A RPN2, 26S proteasome re 93.9 1.8 6E-05 41.9 15.0 16 188-203 536-551 (963)
244 3lpz_A GET4 (YOR164C homolog); 93.8 2.6 8.9E-05 35.4 20.1 168 11-204 37-215 (336)
245 1v54_E Cytochrome C oxidase po 93.8 0.55 1.9E-05 31.3 8.0 63 156-220 25-87 (109)
246 2wpv_A GET4, UPF0363 protein Y 93.7 2.7 9.1E-05 35.0 19.7 143 48-205 61-217 (312)
247 3ffl_A Anaphase-promoting comp 93.5 0.6 2.1E-05 34.5 8.7 29 211-239 121-149 (167)
248 3ffl_A Anaphase-promoting comp 93.3 0.41 1.4E-05 35.4 7.6 21 250-270 128-148 (167)
249 4ady_A RPN2, 26S proteasome re 93.1 6.9 0.00024 38.0 19.7 250 18-271 383-656 (963)
250 4fhn_B Nucleoporin NUP120; pro 93.0 8.2 0.00028 38.8 20.4 113 114-229 846-988 (1139)
251 4gns_B Protein CSD3, chitin bi 92.6 0.8 2.7E-05 43.2 10.3 124 114-239 252-398 (754)
252 2ff4_A Probable regulatory pro 92.0 1.2 4.2E-05 38.5 10.3 105 8-113 111-248 (388)
253 4b4t_P 26S proteasome regulato 91.9 6.2 0.00021 34.8 15.6 185 54-238 30-244 (445)
254 2y69_E Cytochrome C oxidase su 91.5 0.93 3.2E-05 32.0 7.0 63 156-220 68-130 (152)
255 1v54_E Cytochrome C oxidase po 91.4 1.7 5.7E-05 29.1 7.8 60 58-118 28-87 (109)
256 1zbp_A Hypothetical protein VP 91.3 3.6 0.00012 33.2 11.3 127 149-282 5-138 (273)
257 3o48_A Mitochondria fission 1 90.6 3 0.0001 29.5 9.1 72 209-280 37-114 (134)
258 1y8m_A FIS1; mitochondria, unk 89.3 4.6 0.00016 29.0 10.9 66 241-306 36-105 (144)
259 3ltj_A Alpharep-4; protein eng 89.2 6 0.00021 30.1 18.5 179 30-225 18-196 (201)
260 3lpz_A GET4 (YOR164C homolog); 88.9 9.4 0.00032 32.0 20.1 115 111-236 36-160 (336)
261 2uwj_G Type III export protein 88.3 1.6 5.6E-05 28.9 5.9 59 48-113 47-105 (115)
262 2p58_C Putative type III secre 88.3 1.8 6.2E-05 28.8 6.0 82 24-113 22-106 (116)
263 2uwj_G Type III export protein 87.8 4.4 0.00015 26.9 8.7 86 90-180 21-106 (115)
264 2p58_C Putative type III secre 87.3 4.8 0.00016 26.8 9.5 86 90-180 22-107 (116)
265 3ltm_A Alpha-REP4; protein eng 86.9 8.8 0.0003 29.4 18.7 187 23-226 16-202 (211)
266 2y69_E Cytochrome C oxidase su 86.8 4.6 0.00016 28.6 7.8 58 59-117 72-129 (152)
267 3txn_A 26S proteasome regulato 85.0 18 0.00062 31.2 16.6 163 76-238 20-207 (394)
268 2wpv_A GET4, UPF0363 protein Y 83.5 18 0.00062 30.0 18.4 115 111-236 34-158 (312)
269 3esl_A Checkpoint serine/threo 82.9 14 0.00048 28.3 10.4 54 258-311 93-148 (202)
270 4b4t_R RPN7, 26S proteasome re 82.2 12 0.00042 32.7 10.6 94 112-205 133-237 (429)
271 4b4t_P 26S proteasome regulato 82.1 26 0.00089 30.8 23.4 144 23-168 30-204 (445)
272 1zbp_A Hypothetical protein VP 81.8 4 0.00014 32.9 6.6 58 220-277 5-64 (273)
273 3txn_A 26S proteasome regulato 81.4 25 0.00087 30.3 29.6 281 10-310 20-346 (394)
274 4b4t_R RPN7, 26S proteasome re 79.2 7.8 0.00027 34.0 8.4 94 77-170 133-237 (429)
275 3esl_A Checkpoint serine/threo 77.6 22 0.00074 27.3 9.7 58 91-148 95-153 (202)
276 4gq2_M Nucleoporin NUP120; bet 76.9 45 0.0015 32.8 13.6 127 15-155 816-950 (950)
277 3ltm_A Alpha-REP4; protein eng 76.3 23 0.0008 26.9 19.5 185 57-258 18-202 (211)
278 4gq2_M Nucleoporin NUP120; bet 76.2 21 0.00072 35.0 11.1 104 182-291 816-949 (950)
279 1oyz_A Hypothetical protein YI 71.1 38 0.0013 27.1 20.3 226 32-275 29-265 (280)
280 4a1g_A Mitotic checkpoint seri 70.2 28 0.00097 25.2 9.2 49 263-311 84-134 (152)
281 2nsz_A Programmed cell death p 69.9 19 0.00064 25.3 6.9 64 113-176 10-78 (129)
282 2pk8_A Uncharacterized protein 69.4 1.6 5.6E-05 28.1 1.0 30 334-363 12-41 (103)
283 2wvi_A Mitotic checkpoint seri 67.0 35 0.0012 25.1 9.4 49 263-311 79-129 (164)
284 2d2s_A Exocyst complex compone 66.6 23 0.00077 28.0 7.4 88 46-136 24-117 (235)
285 4a1g_A Mitotic checkpoint seri 63.5 40 0.0014 24.5 9.8 56 94-149 84-140 (152)
286 2ion_A PDCD4, programmed cell 62.9 18 0.0006 26.4 5.7 64 113-176 12-80 (152)
287 4b4t_S RPN3, 26S proteasome re 60.3 96 0.0033 27.8 13.7 61 110-170 231-299 (523)
288 4aez_C MAD3, mitotic spindle c 59.5 32 0.0011 26.8 6.8 50 261-310 131-182 (223)
289 3kae_A CDC27, possible protein 57.7 56 0.0019 24.4 8.4 110 20-136 13-140 (242)
290 2wvi_A Mitotic checkpoint seri 56.9 56 0.0019 24.1 10.1 53 57-109 77-130 (164)
291 2d2s_A Exocyst complex compone 56.2 46 0.0016 26.3 7.4 30 209-238 88-117 (235)
292 1wdy_A 2-5A-dependent ribonucl 53.3 75 0.0026 25.0 8.8 115 14-136 7-128 (285)
293 2ion_A PDCD4, programmed cell 52.7 63 0.0022 23.4 7.7 62 12-73 12-78 (152)
294 4aez_C MAD3, mitotic spindle c 52.3 82 0.0028 24.6 9.2 55 93-147 132-187 (223)
295 3ygs_P Procaspase 9; apoptosis 51.5 24 0.00083 23.2 4.4 38 124-161 51-88 (97)
296 2r9g_A AAA ATPase, central reg 51.4 79 0.0027 24.1 8.0 65 42-107 13-85 (204)
297 3ygs_P Procaspase 9; apoptosis 50.7 21 0.00072 23.6 4.0 32 24-55 52-83 (97)
298 4b4t_S RPN3, 26S proteasome re 50.5 44 0.0015 30.0 7.1 63 176-238 231-296 (523)
299 2fe3_A Peroxide operon regulat 48.8 70 0.0024 22.8 7.2 61 65-126 12-72 (145)
300 2nsz_A Programmed cell death p 46.9 71 0.0024 22.3 9.1 63 12-74 10-77 (129)
301 2fe3_A Peroxide operon regulat 45.8 66 0.0023 22.9 6.4 61 166-228 12-72 (145)
302 3bge_A Predicted ATPase; struc 45.0 89 0.003 23.8 6.9 46 44-89 8-56 (201)
303 2zu6_B Programmed cell death p 44.2 1.3E+02 0.0046 24.7 11.9 28 12-39 6-33 (307)
304 3ctd_A Putative ATPase, AAA fa 41.7 1.2E+02 0.004 23.4 7.4 69 39-107 31-107 (213)
305 1wdy_A 2-5A-dependent ribonucl 39.5 1E+02 0.0035 24.2 7.5 117 45-174 7-131 (285)
306 2p1h_A APAF-1, apoptotic prote 39.4 76 0.0026 20.5 6.5 61 95-159 25-85 (94)
307 2xig_A Ferric uptake regulatio 39.3 93 0.0032 22.3 6.4 60 167-228 18-77 (150)
308 4ets_A Ferric uptake regulatio 39.2 96 0.0033 22.6 6.5 69 57-126 14-85 (162)
309 1mzb_A Ferric uptake regulatio 38.4 1E+02 0.0034 21.6 6.9 59 65-124 8-67 (136)
310 2o03_A Probable zinc uptake re 38.3 87 0.003 21.8 5.9 45 45-89 15-59 (131)
311 4ets_A Ferric uptake regulatio 38.2 75 0.0026 23.2 5.8 71 158-229 14-86 (162)
312 2xig_A Ferric uptake regulatio 37.6 1.1E+02 0.0038 21.9 7.3 61 65-126 17-77 (150)
313 3kea_A K1L; tropism, ANK repea 37.5 1.6E+02 0.0054 23.6 8.9 92 219-314 133-224 (285)
314 2w57_A Ferric uptake regulatio 36.8 1.1E+02 0.0039 21.8 6.9 62 64-126 6-68 (150)
315 3ltj_A Alpharep-4; protein eng 36.5 1.3E+02 0.0044 22.3 20.7 123 138-271 56-178 (201)
316 2o03_A Probable zinc uptake re 35.8 64 0.0022 22.5 4.9 44 147-190 16-59 (131)
317 1k1a_A B-cell lymphoma 3-encod 35.7 1.1E+02 0.0036 23.5 6.8 20 50-69 16-35 (241)
318 1ug3_A EIF4GI, eukaryotic prot 35.3 1.6E+02 0.0054 24.7 8.0 23 44-66 15-37 (339)
319 3mwm_A ZUR, putative metal upt 34.7 83 0.0028 22.2 5.4 43 46-88 19-61 (139)
320 1wgl_A TOLL-interacting protei 33.9 35 0.0012 20.1 2.6 48 265-313 11-58 (59)
321 1ug3_A EIF4GI, eukaryotic prot 33.5 2.1E+02 0.0072 23.9 9.6 60 12-71 14-77 (339)
322 3l6a_A Eukaryotic translation 32.8 86 0.003 26.6 6.0 24 78-101 15-38 (364)
323 1te4_A Conserved protein MTH18 32.7 1.2E+02 0.0041 20.7 6.8 59 61-126 45-103 (131)
324 2qx5_A Nucleoporin NIC96; mRNA 31.6 3.2E+02 0.011 25.4 10.4 22 222-243 548-569 (661)
325 3mv2_A Coatomer subunit alpha; 31.1 2.3E+02 0.0078 23.6 12.6 56 239-308 200-257 (325)
326 2qq8_A TBC1 domain family memb 30.9 1.2E+02 0.0043 25.2 6.7 42 164-205 216-257 (334)
327 3mwm_A ZUR, putative metal upt 29.6 60 0.0021 23.0 3.9 46 182-228 19-64 (139)
328 3eyy_A Putative iron uptake re 29.6 1.5E+02 0.0051 21.0 6.1 60 65-126 9-68 (145)
329 2p1h_A APAF-1, apoptotic prote 29.4 74 0.0025 20.5 4.1 36 53-92 49-84 (94)
330 3eu9_A Huntingtin-interacting 29.2 1.4E+02 0.0049 22.5 6.6 19 18-36 15-33 (240)
331 3eyy_A Putative iron uptake re 29.0 1.1E+02 0.0038 21.7 5.3 60 166-228 9-68 (145)
332 2ijq_A Hypothetical protein; s 28.3 1.8E+02 0.006 21.3 7.3 52 52-103 44-103 (161)
333 2w57_A Ferric uptake regulatio 28.3 1.5E+02 0.0051 21.2 5.9 51 41-91 17-68 (150)
334 2qx5_A Nucleoporin NIC96; mRNA 27.4 3.8E+02 0.013 24.9 12.7 220 80-311 299-568 (661)
335 2yru_A Steroid receptor RNA ac 26.0 1.1E+02 0.0039 21.0 4.5 42 62-103 48-89 (118)
336 2ijq_A Hypothetical protein; s 26.0 1.9E+02 0.0067 21.1 7.5 50 155-204 46-103 (161)
337 3kae_A CDC27, possible protein 25.2 2.2E+02 0.0074 21.3 16.0 24 252-275 216-239 (242)
338 2fu4_A Ferric uptake regulatio 24.8 1.3E+02 0.0044 18.6 6.8 59 65-124 7-66 (83)
339 1ya0_A SMG-7 transcript varian 24.5 3E+02 0.01 24.5 8.2 65 225-289 165-231 (497)
340 1k1a_A B-cell lymphoma 3-encod 24.2 1.9E+02 0.0066 21.9 6.5 52 83-134 14-67 (241)
341 4b4t_O 26S proteasome regulato 24.2 2.2E+02 0.0076 24.4 7.2 120 182-301 45-192 (393)
342 2b7e_A PRE-mRNA processing pro 24.0 33 0.0011 20.2 1.3 29 57-85 3-31 (59)
343 2zu6_B Programmed cell death p 24.0 1.4E+02 0.0049 24.6 5.6 22 45-66 171-192 (307)
344 3bge_A Predicted ATPase; struc 23.1 2.5E+02 0.0086 21.4 7.4 44 147-190 10-56 (201)
345 3l6a_A Eukaryotic translation 22.9 3.5E+02 0.012 22.9 12.4 66 10-76 13-84 (364)
346 2keb_A DNA polymerase subunit 22.5 1.7E+02 0.0059 19.3 7.1 60 159-218 27-88 (101)
347 3eu9_A Huntingtin-interacting 22.3 1.3E+02 0.0046 22.7 5.2 55 251-306 181-235 (240)
348 3hra_A Ankyrin repeat family p 22.0 2.4E+02 0.008 20.6 8.6 20 17-36 10-29 (201)
349 1oyz_A Hypothetical protein YI 21.6 3E+02 0.01 21.6 23.2 215 73-305 35-261 (280)
350 2yru_A Steroid receptor RNA ac 21.0 1.3E+02 0.0045 20.6 4.1 42 163-204 48-89 (118)
351 1oai_A Nuclear RNA export fact 21.0 78 0.0027 18.6 2.5 23 189-211 33-55 (59)
352 1bpo_A Protein (clathrin); cla 20.7 4.4E+02 0.015 23.3 10.1 57 154-215 342-398 (494)
353 2crb_A Nuclear receptor bindin 20.4 83 0.0028 20.5 2.7 24 43-66 18-41 (97)
354 2cfu_A SDSA1; SDS-hydrolase, l 20.4 3E+02 0.01 25.6 7.7 62 229-293 437-498 (658)
355 1mzb_A Ferric uptake regulatio 20.3 2.2E+02 0.0077 19.7 7.2 52 40-91 17-69 (136)
356 3t8k_A Uncharacterized protein 20.3 2.6E+02 0.009 20.5 6.9 56 19-74 13-69 (186)
357 2r9g_A AAA ATPase, central reg 20.2 2.9E+02 0.01 21.0 9.3 37 153-190 26-62 (204)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.8e-31 Score=241.48 Aligned_cols=197 Identities=11% Similarity=0.095 Sum_probs=172.6
Q ss_pred HHHHHhccCC----CC-hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---------hHH
Q 017414 28 ARALFELMTE----KN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA---------VEL 93 (372)
Q Consensus 28 A~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~ 93 (372)
+..+.+.+.+ +. ...++.+|..|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4455555554 22 346888999999999999999999999999999999999999999987664 678
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc----CCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 94 GEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 94 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
|.++|++|.+.|+.||..+|++|+.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999974 6889999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc
Q 017414 170 ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 225 (372)
Q Consensus 170 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 225 (372)
.|+.||..||+.||.+|++.|++++|.+++++|.+. +..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999966 9999999999999988763
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.2e-30 Score=241.31 Aligned_cols=293 Identities=11% Similarity=0.035 Sum_probs=267.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
.+|+.++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.++.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE 351 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence 3455567888899999999999999988 789999999999999999999999999999865 4477789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMF 164 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 164 (372)
.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999765 66788999999999999999999999998864 45779999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC------
Q 017414 165 SRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM------ 238 (372)
Q Consensus 165 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~------ 238 (372)
+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++..|.+.|++++|.++|+++
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9999874 457789999999999999999999999999963 3457899999999999999999999999988
Q ss_pred -CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 239 -PFEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 239 -~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+..|+ ..+|..++.+|...|++++|...++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 44777 7899999999999999999999999999999999999999999999999999999999998764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.1e-30 Score=241.42 Aligned_cols=338 Identities=10% Similarity=-0.011 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHhCCCccHHHHHHHHHHhC---------------CCC
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE---------------NVK 72 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---------------~~~ 72 (372)
.++..++.+|.+.|++++|..+|+.+. .++..+++.++.+|.+.|++++|+++|+++... +.+
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIK 197 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCC
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccc
Confidence 444444444444444444444444442 234445555555555555555555555422111 112
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHH------------------------------------
Q 017414 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL------------------------------------ 116 (372)
Q Consensus 73 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------ 116 (372)
++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+...+..+
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 234555555555555555555555555555443 1122222111
Q ss_pred --HHHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCch
Q 017414 117 --IDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192 (372)
Q Consensus 117 --~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 192 (372)
+..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++..+.+.|++
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 2333444555555555555544 456677778888888888888888888887764 23556777777888888888
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 017414 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHL 270 (372)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 270 (372)
++|..+++.+.+ ..+.+..++..++..|.+.|++++|.++|+++ ...| +..+|..++.++...|++++|.++++++
T Consensus 356 ~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 356 NKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888874 33556778888888888888888888888887 3333 5778888888888888888888888888
Q ss_pred HHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 017414 271 IKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQ 350 (372)
Q Consensus 271 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (372)
.+..|.+..+|..++.+|.+.|++++|.++|+++...... ....|. .++......++.+++...+.++.+.
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY--DPLLLN-------ELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--CHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHH-------HHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888764322 111111 1122233467788888888777776
Q ss_pred HHHcCccccc
Q 017414 351 MKFAEHLQNE 360 (372)
Q Consensus 351 m~~~g~~p~~ 360 (372)
..+.|..|+.
T Consensus 505 ~~~~~~~p~~ 514 (597)
T 2xpi_A 505 VKKTQSNEKP 514 (597)
T ss_dssp HHHSCCCSGG
T ss_pred hhccccchhh
Confidence 6666777763
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.6e-30 Score=232.96 Aligned_cols=199 Identities=13% Similarity=0.145 Sum_probs=173.0
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC---------HH
Q 017414 58 EAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK---------IG 127 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 127 (372)
.+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4556667777777665544 5788999999999999999999999999999999999999999988765 68
Q ss_pred HHHHHHHhccc----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 128 KALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 128 ~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
+|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999974 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHc
Q 017414 204 SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWGSLLAASNIY 257 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~ 257 (372)
+. |+.||..+|+.||.+|++.|+.++|.+++++| +..|+..||+.++..|...
T Consensus 168 ~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 76 99999999999999999999999999999999 8899999999999988753
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.3e-26 Score=203.71 Aligned_cols=296 Identities=14% Similarity=0.076 Sum_probs=156.4
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
.|.+...+..+...+.+.|++++|...++...+ .+..+|..+...+.+.|++++|+..|+++.+.. +.+..+|..+
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 107 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINL 107 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHH
Confidence 444555555555555556666666555555443 234455556666666666666666666555532 2233445555
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcchHHHHHHHHHhcCChh
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGR 158 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 158 (372)
..++.+.|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|+++.+ | +..+|..+...+...|+++
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 555555666666666655555543 23344445555555555666666555555442 1 2345555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
+|+..|+++.+.+ +.+...+..+...+...|++++|...++++... .+.+..++..+..+|...|++++|.+.|+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 187 LAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555542 123344555555555555555555555555432 1223445555555555555555555555554
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 239 -PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 239 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
...| +..+|..+..++...|++++|...++++.+..|.++.++..++.++...|++++|.+.++++.
T Consensus 264 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2223 344455555555555555555555555555555555555555555555555555555555553
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.9e-25 Score=196.62 Aligned_cols=299 Identities=13% Similarity=0.081 Sum_probs=265.6
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
...|.+..+|..+...|.+.|++++|+..|+++.+ | +..+|..++.++.+.|++++|++.|+++.+.. +.+...+.
T Consensus 61 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 139 (388)
T 1w3b_A 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRS 139 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHH
T ss_pred hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 35678899999999999999999999999999875 4 45689999999999999999999999999853 23455677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCC
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGL 156 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 156 (372)
.+...+...|++++|...++++.+.. +.+..+|..+..++...|++++|...|+++.+ .+...|..+...+...|+
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 88899999999999999999999875 55678899999999999999999999998874 345688999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
+++|+..|++..... +.+..++..+...+...|++++|...|+++.+. .+.+..+|..+..++.+.|++++|...|+
T Consensus 219 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 219 FDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998864 335788889999999999999999999999953 34467889999999999999999999999
Q ss_pred hC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 237 RM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 237 ~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
++ ..+.+..++..+...+...|++++|...++++.+..|+++.++..++.++.+.|++++|.+.++++..
T Consensus 296 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98 22357889999999999999999999999999999999999999999999999999999999999865
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=5e-25 Score=198.85 Aligned_cols=301 Identities=12% Similarity=0.054 Sum_probs=258.8
Q ss_pred cccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHH
Q 017414 2 FTLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 78 (372)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 78 (372)
+..+|.+..++..+...|.+.|++++|+.+|+.+.+ .+..+|..++.++...|++++|+..|+++.+.+ +.+..++
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 97 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAAR 97 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 345778899999999999999999999999999875 467899999999999999999999999999864 4567889
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCch---hHHHHH------------HHHHHhcCCHHHHHHHHHhccc---CC
Q 017414 79 LAALSACAQLGAVELGEWIHNYIEQYGLNTIV---PLNNAL------------IDMYAKSGKIGKALQVFENMKN---KS 140 (372)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~ 140 (372)
..+..++.+.|++++|...++.+.+.. +.+. ..+..+ ...+...|++++|..+|+++.+ .+
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 176 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999864 3344 555555 4458999999999999998864 46
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHH--
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCM-- 218 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-- 218 (372)
..++..++.+|.+.|++++|++.|+++.+.. +.+..++..+...|...|++++|...|+++... .+.+...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 253 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQ 253 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHH
Confidence 6789999999999999999999999998863 456788999999999999999999999999853 23344555444
Q ss_pred ----------HHHHHhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHH
Q 017414 219 ----------IDLLGRAGYLQEAEKLLRRM-PFEAN-----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 282 (372)
Q Consensus 219 ----------i~~~~~~g~~~~a~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 282 (372)
+..+...|++++|...|+++ ...|+ ...+..+..++...|++++|...++++.+..|.++.++.
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 78899999999999999998 43454 447888889999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 283 ILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.++.+|...|++++|.+.+++....
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=2.8e-22 Score=174.96 Aligned_cols=295 Identities=12% Similarity=0.045 Sum_probs=250.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
|+..+..+...+.+.|++++|+..|+.+.+ .+..++..+..++...|++++|+..|+++.+.. +.+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 577889999999999999999999999875 357789999999999999999999999998863 3467889999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCC---CchhHHHHH------------HHHHHhcCCHHHHHHHHHhccc---CCcchHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLN---TIVPLNNAL------------IDMYAKSGKIGKALQVFENMKN---KSVITWTT 146 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 146 (372)
+...|++++|...++.+.+.. + .+...+..+ ...+...|++++|.++|+++.+ .+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999999864 3 345555555 6889999999999999998764 45678999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHH----------
Q 017414 147 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG---------- 216 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 216 (372)
+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 9999999999999999999998874 456788889999999999999999999999864 233333333
Q ss_pred --HHHHHHHhcCCHHHHHHHHhhC-CCCCC-H----HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 217 --CMIDLLGRAGYLQEAEKLLRRM-PFEAN-A----AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 217 --~li~~~~~~g~~~~a~~~~~~~-~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
.+...+.+.|++++|...+++. ...|+ . ..+..+..++...|++++|...++++.+..|.++.++..++.++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 2366789999999999999987 33343 2 23555778899999999999999999999999999999999999
Q ss_pred HHcCCchhHHHHHHHHHhC
Q 017414 289 AILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (372)
...|++++|.+.+++....
T Consensus 317 ~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 9999999999999988653
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=4.6e-23 Score=185.96 Aligned_cols=295 Identities=12% Similarity=0.030 Sum_probs=248.4
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH----
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE---- 75 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~---- 75 (372)
...|.+..+|..+...|.+.|++++|+..|+++.+ .+..++..++.+|.+.|++++|++.|+++.+. .|+.
T Consensus 54 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 131 (450)
T 2y4t_A 54 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEK 131 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 35678899999999999999999999999999875 35778999999999999999999999999985 4543
Q ss_pred HHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CC
Q 017414 76 IAMLAA------------LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KS 140 (372)
Q Consensus 76 ~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 140 (372)
..+..+ ...+...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|..+|+++.+ .+
T Consensus 132 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 210 (450)
T 2y4t_A 132 EAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 455544 445889999999999999999875 66788899999999999999999999998864 46
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH------------HHHhcccCchHHHHHHHHHhHHhcCC
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI------------LSACCHVGLVELGRRYFNIMKSRYGI 208 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~ 208 (372)
..+|..++.+|...|++++|+..|+++.... +.+...+..+ ...|...|++++|..+|+.+.+.
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--- 286 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--- 286 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 7899999999999999999999999998763 2234444444 78899999999999999999864
Q ss_pred CcC-----HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 209 EPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 209 ~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
.|+ ...+..+..++.+.|++++|...++++ ...| +...|..+..+|...|++++|...++++.++.|.++.++
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence 343 457888999999999999999999997 4345 688999999999999999999999999999999999898
Q ss_pred HHHHHH------------HHHcC-----CchhHHHHHHHH
Q 017414 282 AILSNI------------YAILG-----RWNESGKIRKVM 304 (372)
Q Consensus 282 ~~l~~~------------~~~~g-----~~~~a~~~~~~m 304 (372)
..+..+ |...| +.+++.+.++++
T Consensus 367 ~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 888844 44445 445566666653
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1e-21 Score=180.02 Aligned_cols=295 Identities=10% Similarity=-0.029 Sum_probs=252.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
+...+......+.+.|++++|+..|+++.+ |+..+|..++.++.+.|++++|+..|+++.+.+ +.+..++..+..++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456788889999999999999999999875 888999999999999999999999999999864 45677899999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCC---------------------------------------------------------
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNT--------------------------------------------------------- 108 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~--------------------------------------------------------- 108 (372)
.+.|++++|...|+.+.+.+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988765211
Q ss_pred ---------------------chhHHHHHHHHHHh---cCCHHHHHHHHHhccc-----C------------CcchHHHH
Q 017414 109 ---------------------IVPLNNALIDMYAK---SGKIGKALQVFENMKN-----K------------SVITWTTM 147 (372)
Q Consensus 109 ---------------------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~------------~~~~~~~l 147 (372)
+...+..+...+.. .|++++|..+|+++.+ . +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 12233333344443 8999999999998765 1 34578889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 227 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 227 (372)
...+...|++++|...++++.+... +...+..+...+...|++++|...++.+.+ ..+.+...+..+...|...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALK--LDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHT--TCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhh--cCcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998753 377888899999999999999999999985 334467889999999999999
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 228 LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 228 ~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|.+.++++.
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999987 3334 567888899999999999999999999999999999999999999999999999999999886
Q ss_pred hC
Q 017414 306 DM 307 (372)
Q Consensus 306 ~~ 307 (372)
..
T Consensus 400 ~~ 401 (514)
T 2gw1_A 400 EL 401 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.9e-21 Score=167.85 Aligned_cols=286 Identities=11% Similarity=0.060 Sum_probs=193.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAAL 82 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 82 (372)
+.|..++..++..+...|++++|..+|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44556666777777777777777777777654 234556666677777777777777777777643 33556666777
Q ss_pred HHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChh
Q 017414 83 SACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGR 158 (372)
Q Consensus 83 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 158 (372)
..+...| ++++|...++.+.+.. +.+...+..+..++...|++++|...|++..+ .+..++..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7777777777777654 44566677777777777777777777776653 23456666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcC-------CCcCHHHHHHHHHHHHhcCCHHHH
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG-------IEPKIEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a 231 (372)
+|.+.+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+..+|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777777653 33456667777777777777777777777764311 123345677777777777777777
Q ss_pred HHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH-HHcCCc
Q 017414 232 EKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY-AILGRW 294 (372)
Q Consensus 232 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 294 (372)
...+++. ...| +...+..+...+...|++++|...++++.+..|.++.++..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 7777766 2222 4556677777777777777777777777777777777777777766 344443
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.5e-21 Score=177.52 Aligned_cols=225 Identities=9% Similarity=-0.069 Sum_probs=161.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhc
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALH 154 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 154 (372)
+..+...+...|++++|...++.+.+.... ...+..++.+|...|++++|...|++..+ .+..+|..+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 334444445555555555555555544311 44555555555555555555555555443 2445777788888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 017414 155 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (372)
|++++|...+++..+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888887764 234567777888888888888888888888753 234567788888888889999999888
Q ss_pred HhhC----CCCCC----HHHHHHHHHHHHH---cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 235 LRRM----PFEAN----AAIWGSLLAASNI---YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 235 ~~~~----~~~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
++++ +..++ ...+..+...+.. .|++++|...++++.+..|.++.++..++.+|...|++++|...+++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8877 22222 3378888888888 89999999999999998888888888999999999999999999888
Q ss_pred HHhC
Q 017414 304 MRDM 307 (372)
Q Consensus 304 m~~~ 307 (372)
....
T Consensus 475 a~~~ 478 (514)
T 2gw1_A 475 SADL 478 (514)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=4e-21 Score=168.55 Aligned_cols=281 Identities=11% Similarity=-0.005 Sum_probs=228.8
Q ss_pred HHHhcCCHHHHHH-HHhccCC--C-----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 017414 18 GYAKVGDLNNARA-LFELMTE--K-----NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 89 (372)
Q Consensus 18 ~~~~~~~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 89 (372)
.+.-.|++++|.. .|++..+ | +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445688999998 8886654 1 34678899999999999999999999999864 457788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC---cchHHH---------------HHHHH
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS---VITWTT---------------MIAGL 151 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~---------------l~~~~ 151 (372)
++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+.+ ...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999999886 5678899999999999999999999999886432 222221 13334
Q ss_pred HhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 017414 152 ALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 230 (372)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (372)
...|++++|+..|+++.+..... +..++..+...+...|++++|...++++.+. .+.+...+..+..++...|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48999999999999999874321 5788899999999999999999999999853 24467889999999999999999
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC-----------cchHHHHHHHHHHcCCchhH
Q 017414 231 AEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-----------SGNYAILSNIYAILGRWNES 297 (372)
Q Consensus 231 a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a 297 (372)
|...|+++ ...| +...+..+..++...|++++|...++++.+..|.+ ..+|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999997 3334 67789999999999999999999999999988776 78999999999999999999
Q ss_pred HHHHH
Q 017414 298 GKIRK 302 (372)
Q Consensus 298 ~~~~~ 302 (372)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 99876
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.1e-20 Score=161.23 Aligned_cols=264 Identities=11% Similarity=0.016 Sum_probs=229.8
Q ss_pred CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 017414 38 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117 (372)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 117 (372)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466778889999999999999999999998864 3455667778888999999999999999999875 56788889999
Q ss_pred HHHHhcC-CHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchH
Q 017414 118 DMYAKSG-KIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 193 (372)
Q Consensus 118 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 193 (372)
..+...| ++++|...|++..+ .+..+|..+...+...|++++|++.+++..+... .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 3567899999999999999999999999998743 34566777889999999999
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC----------CCCHHHHHHHHHHHHHcCChhH
Q 017414 194 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF----------EANAAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~----------~~~~~~~~~l~~~~~~~~~~~~ 262 (372)
+|...++++.+ ..+.+...+..+...+...|++++|...+++. .. .....++..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999995 33556788999999999999999999999887 11 2345788999999999999999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
|...++++.+..|.++.++..++.++...|++++|.+.+++...
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987643
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=4.3e-20 Score=161.07 Aligned_cols=283 Identities=9% Similarity=-0.031 Sum_probs=237.4
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC----CH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP----DE 75 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p----~~ 75 (372)
...|.+..++..+...+...|++++|...|+.+.+ | +...|..+...+...|++++|+..|+++.+. .| +.
T Consensus 31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 108 (359)
T 3ieg_A 31 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEK 108 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHH
T ss_pred hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChH
Confidence 35677899999999999999999999999999875 3 5678999999999999999999999999885 35 34
Q ss_pred HHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CC
Q 017414 76 IAMLAA------------LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KS 140 (372)
Q Consensus 76 ~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 140 (372)
..+..+ ...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++..+ .+
T Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 187 (359)
T 3ieg_A 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 444444 578889999999999999999875 56788899999999999999999999998865 35
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH------------HHHHHhcccCchHHHHHHHHHhHHhcCC
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFI------------AILSACCHVGLVELGRRYFNIMKSRYGI 208 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 208 (372)
..++..+...+...|++++|...+++..+... .+...+. .+...+.+.|++++|...++.+.+..
T Consensus 188 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 264 (359)
T 3ieg_A 188 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-- 264 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 67899999999999999999999999988642 2333332 23566889999999999999999642
Q ss_pred CcCH----HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHH
Q 017414 209 EPKI----EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 282 (372)
Q Consensus 209 ~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 282 (372)
+.+. ..+..+..++...|++++|...+++. ...| +...+..+...+...|++++|...++++.++.|.++..+.
T Consensus 265 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 2233 33556788999999999999999988 3344 7788999999999999999999999999999999998888
Q ss_pred HHHHHHHHc
Q 017414 283 ILSNIYAIL 291 (372)
Q Consensus 283 ~l~~~~~~~ 291 (372)
.+..+....
T Consensus 345 ~l~~~~~~~ 353 (359)
T 3ieg_A 345 GLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776544
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=5.4e-20 Score=169.63 Aligned_cols=299 Identities=11% Similarity=0.019 Sum_probs=234.7
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHH-------------
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRM------------- 66 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m------------- 66 (372)
...|.++.+|..+...|.+.|++++|++.|+++.+ | +..++..+..++...|++++|+..|+.+
T Consensus 53 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 132 (537)
T 3fp2_A 53 ELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP 132 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------C
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHH
Confidence 35677888888888888888888888888888764 3 5567777888888888888777766422
Q ss_pred --------------------------------------------------------------------------------
Q 017414 67 -------------------------------------------------------------------------------- 66 (372)
Q Consensus 67 -------------------------------------------------------------------------------- 66 (372)
T Consensus 133 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (537)
T 3fp2_A 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence
Q ss_pred ----------------HhCCCCCC--------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 017414 67 ----------------QVENVKPD--------EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 67 ----------------~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (372)
.+ ..|+ ..++..+...+...|++++|...++.+.+.. |+...+..+...|..
T Consensus 213 ~a~~~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLS--ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHH--HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence 11 1122 1234555566777788888888888888864 447778888888888
Q ss_pred cCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHH
Q 017414 123 SGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 123 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
.|++++|...|++..+ .+..+|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|..++
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999887764 356788889999999999999999999988864 234567888888999999999999999
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCC----CCHHHHHHHHHHHHHc----------CChh
Q 017414 200 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFE----ANAAIWGSLLAASNIY----------GDVE 261 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~----~~~~~~~~l~~~~~~~----------~~~~ 261 (372)
+.+.+. .+.+...+..+...+...|++++|...|+++ +.. .....+......+... |+++
T Consensus 368 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 445 (537)
T 3fp2_A 368 NETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN 445 (537)
T ss_dssp HHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH
T ss_pred HHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH
Confidence 999864 3445678888999999999999999999886 111 1223344555677777 9999
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 262 LGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 262 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
+|...++++.+..|.++.++..++.+|...|++++|.+.|++.....
T Consensus 446 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 446 AAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999986653
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=5.9e-20 Score=169.36 Aligned_cols=295 Identities=11% Similarity=0.064 Sum_probs=241.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
....|..+...+.+.|++++|+..|+++.+ .++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 356788899999999999999999999875 367899999999999999999999999999864 4567889999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCC-------------------------------------Cchh----------------
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLN-------------------------------------TIVP---------------- 111 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~-------------------------------------~~~~---------------- 111 (372)
+...|++++|...++.+ ..... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999998633 21101 0000
Q ss_pred --------------HHHHHHHHHHh--------cCCHHHHHHHHHhcccCCc----------chHHHHHHHHHhcCChhH
Q 017414 112 --------------LNNALIDMYAK--------SGKIGKALQVFENMKNKSV----------ITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 112 --------------~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~ 159 (372)
....+...+.. .|++++|..+|+++.+.++ .++..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 11222222211 2478899999998876432 257777788999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-
Q 017414 160 ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM- 238 (372)
Q Consensus 160 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~- 238 (372)
|...+++..+. .|+...+..+...+...|++++|...++.+.+. .+.+..++..+...+...|++++|...+++.
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999986 455788889999999999999999999999864 2456788999999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 239 PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 239 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
...| +...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|.+.++++....
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 3334 467888899999999999999999999999999999999999999999999999999999986543
No 18
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=2.6e-19 Score=151.50 Aligned_cols=272 Identities=11% Similarity=-0.015 Sum_probs=221.3
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCh----hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 017414 16 VAGYAKVGDLNNARALFELMTEKNV----ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV 91 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 91 (372)
+.-....|+++.|+..++.....++ .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 3456678999999999988766432 3556688999999999999987654 2 366778888899999999999
Q ss_pred HHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 92 ELGEWIHNYIEQYGLNT-IVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
++|.+.++.+...+..| +...+..+..++...|++++|++.+++ ..+..++..++..+.+.|++++|.+.|+++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 99999999999876434 567778888999999999999999999 567789999999999999999999999999987
Q ss_pred CCCCCHHHH---HHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHH
Q 017414 171 RVKPNEITF---IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAA 245 (372)
Q Consensus 171 ~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~ 245 (372)
. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++. ...| +..
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4 543211 22334455679999999999999964 4668899999999999999999999999997 4345 677
Q ss_pred HHHHHHHHHHHcCChhH-HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 246 IWGSLLAASNIYGDVEL-GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
++..++..+...|+.++ +.++++++.+.+|+++.+ .....+.+.|+++..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 89999999999999875 678999999999998843 34556666666665544
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=2.3e-20 Score=163.63 Aligned_cols=261 Identities=8% Similarity=-0.074 Sum_probs=218.2
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568999999999999999999999999864 4578899999999999999999999999999875 566888999999
Q ss_pred HHHhcCCHHHHHHHHHhcccCC-------------cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 017414 119 MYAKSGKIGKALQVFENMKNKS-------------VITWTTMIAGLALHGLGREALDMFSRMERARVK-PNEITFIAILS 184 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~ 184 (372)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|++.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999887421 123344588899999999999999999987432 15788999999
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 262 (372)
.+...|++++|...|+++.+. .+.+..+|..+..+|...|++++|...|++. ...| +..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999863 3456889999999999999999999999988 3345 57889999999999999999
Q ss_pred HHHHHHHHHHhCCC------------CcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 263 GECALQHLIKLEPH------------NSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 263 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
|...++++.++.|. +..+|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999997765 367899999999999999988887654
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=1.2e-19 Score=156.20 Aligned_cols=259 Identities=9% Similarity=-0.058 Sum_probs=200.1
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 017414 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 120 (372)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (372)
..+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 445666677777777777777777776643 3356666677777777777777777777777664 44566677777777
Q ss_pred HhcCCHHHHHHHHHhcccC---CcchHHHH--------------HH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 017414 121 AKSGKIGKALQVFENMKNK---SVITWTTM--------------IA-GLALHGLGREALDMFSRMERARVKPNEITFIAI 182 (372)
Q Consensus 121 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 182 (372)
...|++++|.+.|+++.+. +...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 7777777777777766532 22223222 22 3777889999999999998874 3467888889
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV 260 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 260 (372)
...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999853 2446788999999999999999999999987 3334 677899999999999999
Q ss_pred hHHHHHHHHHHHhCCC------------CcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 261 ELGECALQHLIKLEPH------------NSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 261 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
++|...++++.+..|. ++.++..++.++...|++++|..++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999888 6789999999999999999999988643
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=1.4e-19 Score=158.76 Aligned_cols=279 Identities=13% Similarity=0.038 Sum_probs=203.8
Q ss_pred HhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHH-HHHHHHhCCC-CC--CHHHHHHHHHHHHccCChHHHH
Q 017414 20 AKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAIT-LFRRMQVENV-KP--DEIAMLAALSACAQLGAVELGE 95 (372)
Q Consensus 20 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~m~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~ 95 (372)
...+.|+.+...|+.+.+.+.. ++...|++++|++ .|++...... .| +...+..+...+.+.|++++|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 84 (368)
T 1fch_A 12 SDVDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAV 84 (368)
T ss_dssp -----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHH
Confidence 3455666666666666554332 3345588999998 8887765321 11 3456778899999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 017414 96 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARV 172 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 172 (372)
..++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..++..+...|...|++++|++.++++.....
T Consensus 85 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 85 LLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999875 56788899999999999999999999998764 4667899999999999999999999999998642
Q ss_pred CCCHHHHH-H--------------HHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 173 KPNEITFI-A--------------ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 173 ~p~~~~~~-~--------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
.. ...+. . .+..+...|++++|...++++.+.....++..++..+...|...|++++|...+++
T Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 164 AY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 11221 1 13333488999999999999996422222578899999999999999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 238 M-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 238 ~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+ ...| +...+..+...+...|++++|...++++.+..|.++.++..++.+|.+.|++++|...+++....
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7 3334 67889999999999999999999999999999999999999999999999999999999988654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=5.3e-20 Score=161.33 Aligned_cols=259 Identities=13% Similarity=-0.007 Sum_probs=214.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 83 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 83 (372)
.+...+..+...+.+.|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455688999999999999999999999875 467899999999999999999999999999864 446889999999
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhH----------HHHHHHHHHhcCCHHHHHHHHHhccc--C---CcchHHHHH
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPL----------NNALIDMYAKSGKIGKALQVFENMKN--K---SVITWTTMI 148 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~ 148 (372)
++...|++++|...++++.+.. +.+... +..+...+...|++++|..+|+++.+ | +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998864 222222 33458899999999999999998874 3 567899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 017414 149 AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (372)
..|...|++++|++.|++..+.. +.+..++..+..+|...|++++|...|+++.+. .+.+..++..+..+|...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999874 446789999999999999999999999999863 244578899999999999999
Q ss_pred HHHHHHHhhC-CCCC-------------CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 017414 229 QEAEKLLRRM-PFEA-------------NAAIWGSLLAASNIYGDVELGECALQHL 270 (372)
Q Consensus 229 ~~a~~~~~~~-~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 270 (372)
++|...|++. ...| +...|..+..++...|+.+.+..+.++.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999987 1111 2577899999999999999888876653
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=1.5e-20 Score=163.23 Aligned_cols=251 Identities=14% Similarity=0.087 Sum_probs=119.4
Q ss_pred HhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 017414 20 AKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHN 99 (372)
Q Consensus 20 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 99 (372)
-+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999655 48999999999999999999999653 677799999999999999999999888
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 017414 100 YIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 179 (372)
..++. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 87774 4557788899999999999999998886 477789999999999999999999999976 378
Q ss_pred HHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 017414 180 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGD 259 (372)
Q Consensus 180 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (372)
..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 999999999999999999999882 7889999999999999999998777766544544 5578899999999
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 260 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
+++|..+++..+.+++.+...|+.|..+|++- +.++..+-++
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~ 264 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLE 264 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 99999999999999999999999999998876 3444444444
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=2.7e-19 Score=154.07 Aligned_cols=261 Identities=11% Similarity=0.017 Sum_probs=218.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
+...+..+...+.+.|++++|..+|+++.+ .+...+..+..++...|++++|...|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 456677889999999999999999999865 366789999999999999999999999998864 4577889999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHH--------------HH-HHHhcCCHHHHHHHHHhccc---CCcchHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL--------------ID-MYAKSGKIGKALQVFENMKN---KSVITWTT 146 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 146 (372)
+...|++++|...++.+.+.. +.+...+..+ .. .+...|++++|...++++.+ .+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 999999999999999999864 3344444433 33 47788999999999998764 35678999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC
Q 017414 147 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 226 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 226 (372)
+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+..+|...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998874 346778889999999999999999999999863 2446788999999999999
Q ss_pred CHHHHHHHHhhC-CCCC-------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 227 YLQEAEKLLRRM-PFEA-------------NAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 227 ~~~~a~~~~~~~-~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
++++|...+++. ...| +...|..+..++...|++++|..++++..+.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999987 2223 3678888999999999999999998876653
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=1.8e-18 Score=146.40 Aligned_cols=246 Identities=11% Similarity=0.054 Sum_probs=202.5
Q ss_pred HHHHHhCCCccHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 47 IAGYAQMDQPNEAITLFRRMQVENVKPDE--IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 47 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
++.....|++..|+..+++.... .|+. .....+.+++...|+++.|...++. . -+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 34566789999999999887553 4543 3556678999999999999986654 2 3667888899999999999
Q ss_pred CHHHHHHHHHhccc----C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHH
Q 017414 125 KIGKALQVFENMKN----K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 125 ~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
+.++|++.++++.. | +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998752 3 456778888999999999999999987 457788889999999999999999999
Q ss_pred HHhHHhcCCCcCHHH---HHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC
Q 017414 200 NIMKSRYGIEPKIEQ---YGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
+.+.+. .|+... ...++..+...|++++|..+|+++ ....+...++.+..++...|++++|+..++++.+.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999964 354321 122344455669999999999998 323578889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHcCCchh-HHHHHHHHHhC
Q 017414 275 PHNSGNYAILSNIYAILGRWNE-SGKIRKVMRDM 307 (372)
Q Consensus 275 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 307 (372)
|.++.++..++..+...|+.++ +.++++++...
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 56888887654
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=8.5e-20 Score=158.44 Aligned_cols=266 Identities=11% Similarity=0.094 Sum_probs=136.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+.+++...+. .++..+.+.++.+|.+
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHH
Confidence 3469999999999999999999999664 67779999999999999999999988777663 4567888899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+ ..|..++.++.+.|++++|.+.++++
T Consensus 107 lg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 107 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp --CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 999999988874 467779999999999999999999999987 48999999999999999999999987
Q ss_pred HHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHH
Q 017414 168 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAA 245 (372)
Q Consensus 168 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~ 245 (372)
.+..+|..++.+|...|+++.|......+ ...+.....++..|.+.|++++|..+++.. +..+ ...
T Consensus 175 ------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~ 242 (449)
T 1b89_A 175 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 242 (449)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH
T ss_pred ------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH
Confidence 27789999999999999999996544432 234444567899999999999999999987 5444 567
Q ss_pred HHHHHHHHHHHc--CChhHHHHHHHHHHHhCC-----CCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 246 IWGSLLAASNIY--GDVELGECALQHLIKLEP-----HNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 246 ~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
.|..|..++++. ++..+..+.|..-..+.| .+...|..+...|...++|+.|..+.
T Consensus 243 ~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 243 MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 788887777766 333444444433322334 46779999999999999999888744
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.8e-17 Score=136.38 Aligned_cols=219 Identities=12% Similarity=-0.013 Sum_probs=103.1
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCc----hhHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL--NTI----VPLNNA 115 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 115 (372)
.|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++.+.+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555443 4444555555555555555555555555444210 001 233444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHH
Q 017414 116 LIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 195 (372)
Q Consensus 116 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 195 (372)
+..+|...|++++| +..|++.... .|+. ..+...|++++|
T Consensus 85 l~~~~~~~~~~~~A-------------------------------~~~~~~a~~~--~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKT-------------------------------IEYYQKSLTE--HRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHH-------------------------------HHHHHHHHHH--CCCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHH-------------------------------HHHHHHHHhc--Cchh-------HHHHHHhHHHHH
Confidence 44444444444444 4444444432 1221 122333444555
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 196 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
...++.+.. ..+.+...+..+...+...|++++|...+++. ... .+...+..+...+...|++++|...++++.+.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 555555442 11222344444555555555555555555544 111 23444555555555555555555555555555
Q ss_pred CCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 274 EPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 274 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
.|.++.++..++.++...|++++|.+.+++.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555555555555555555555544
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1e-16 Score=132.95 Aligned_cols=188 Identities=13% Similarity=0.062 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHHHH
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARV--KPN----EITFIAI 182 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~----~~~~~~l 182 (372)
..+..+...+...|++++|...|++..+ .+..+|..+..++...|++++|++.+++..+... .|+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444555555566666666665554432 3445566666666666666666666666655321 122 4678889
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV 260 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 260 (372)
...+...|++++|...|+++.+. .|+. ..+...|++++|...++++ ...| +...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999954 4553 4566778899999999987 4445 556788888899999999
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 261 ELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 261 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
++|...++++.+..|.++.++..++.++...|++++|.+.+++.....
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999987653
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.7e-16 Score=142.58 Aligned_cols=307 Identities=10% Similarity=-0.022 Sum_probs=206.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-----------CChhhHHHHHHHHHh--CCCccHHHHHHHHHHhCCC
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE-----------KNVISWTTLIAGYAQ--MDQPNEAITLFRRMQVENV 71 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~--~~~~~~A~~~~~~m~~~~~ 71 (372)
.+....+|+.+..+|...|++++|...+++..+ ....+++.+..++.. .+++++|++.|++..+.
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-- 167 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-- 167 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--
Confidence 345577899999999999999999999887642 123566666655554 45799999999999885
Q ss_pred CC-CHHHHHHHHHH---HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhccc---CC
Q 017414 72 KP-DEIAMLAALSA---CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK----SGKIGKALQVFENMKN---KS 140 (372)
Q Consensus 72 ~p-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~ 140 (372)
.| +...+..+..+ +...++.++|.+.+++..+.. +.+..++..+...+.. .|++++|.+++++..+ .+
T Consensus 168 ~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~ 246 (472)
T 4g1t_A 168 KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246 (472)
T ss_dssp STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH
Confidence 45 44455555444 445677888999999988875 4566666666655554 4678899999987653 35
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc-------------------CchHHHHHHHHH
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV-------------------GLVELGRRYFNI 201 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~ 201 (372)
..++..+...|...|++++|+..+++..+.. +-+..++..+...|... +..+.|...++.
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5688999999999999999999999998864 23455666555554321 345677888888
Q ss_pred hHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH----HHHHHH-HHHHcCChhHHHHHHHHHHHh--
Q 017414 202 MKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAI----WGSLLA-ASNIYGDVELGECALQHLIKL-- 273 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~----~~~l~~-~~~~~~~~~~a~~~~~~~~~~-- 273 (372)
+.+. -+.+...+..+...|...|++++|...|++. ...|+... +..+.. .....|+.++|+..++++.++
T Consensus 326 a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 326 ADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred Hhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 7753 2344567788999999999999999999987 44444332 233332 234678899998888777653
Q ss_pred ----------------------CCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeE
Q 017414 274 ----------------------EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSY 317 (372)
Q Consensus 274 ----------------------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 317 (372)
+|.++.+|..|+.+|...|++++|.+.|++..+.|-..+...+|
T Consensus 404 ~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 404 KSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 57778899999999999999999999999988766544333333
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=6.8e-19 Score=164.77 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccC-------CCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMT-------EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
..+||++|++|++.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4689999999999999999999998764 489999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CcchHHHHHHHHHhcC
Q 017414 82 LSACAQLGAV-ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----SVITWTTMIAGLALHG 155 (372)
Q Consensus 82 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 155 (372)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.++...+..+ .+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999998777654333333332222211 1234445555565544
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=1.1e-16 Score=129.41 Aligned_cols=195 Identities=13% Similarity=0.036 Sum_probs=145.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017414 107 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAIL 183 (372)
Q Consensus 107 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 183 (372)
|++...+..+...+.+.|++++|...|++..+. +..++..+..++.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455666677777777777777777777766542 44567777777778888888888888777763 33456677777
Q ss_pred HHhccc-----------CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHH
Q 017414 184 SACCHV-----------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLL 251 (372)
Q Consensus 184 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~ 251 (372)
..+... |++++|...++++.+. -+.+...+..+..+|...|++++|+..|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 777777 9999999999999853 2345788889999999999999999999987 2127788899999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
.++...|++++|...++++.+..|.++.++..++.++...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998765
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=1.7e-16 Score=133.08 Aligned_cols=242 Identities=10% Similarity=-0.031 Sum_probs=185.3
Q ss_pred HhCCCccHHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 017414 51 AQMDQPNEAITLFRRMQVENV--KP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 127 (372)
...|++++|+..|+++.+... +| +..++..+..++...|++++|...++++.+.. +.+..++..++.+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345778889999988887532 11 35567788888888999999999999888875 556788888899999999999
Q ss_pred HHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 128 KALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 128 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
+|...|++..+ .+..++..+...|...|++++|.+.|+++.+.. |+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999988764 356788889999999999999999999988863 4444444444555677999999999988875
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc
Q 017414 205 RYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 205 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
. .+++...+ .++..+...++.++|...+++. ...|+ ...+..+...+...|++++|...++++.+..|.+.
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 4 23444444 4777788888889999999886 33332 56788889999999999999999999999998765
Q ss_pred chHHHHHHHHHHcCCchhHHHHH
Q 017414 279 GNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
..+ ..++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 443 56778888888888765
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=2.6e-16 Score=131.74 Aligned_cols=244 Identities=9% Similarity=-0.053 Sum_probs=119.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHc
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD--EIAMLAALSACAQ 87 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~ 87 (372)
......+...|++++|+..|+...+ | +...+..+..++...|++++|++.|++..+.+..|+ ...|..+..++..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3344445555555555555554432 1 233444455555555555555555555544211111 1224444444445
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
.|++++|...++.+.+.. +.+.. +|..+...|...|++++|++.|++.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~-------------------------------~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLD-------------------------------MYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTH-------------------------------HHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred cccHHHHHHHHHHHHhcC-cccHH-------------------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555444432 22334 4444444444555555555555444
Q ss_pred HHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHhhC----CC
Q 017414 168 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY---LQEAEKLLRRM----PF 240 (372)
Q Consensus 168 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~----~~ 240 (372)
.+.. +.+...+..+...+...+++++|...|+++.+. .+.+...+..+..++...|+ +++|...+++. ..
T Consensus 135 l~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 211 (272)
T 3u4t_A 135 IRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211 (272)
T ss_dssp CCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred hhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence 4431 222333333331222223555555555555532 12234444455555555554 44444444443 11
Q ss_pred CCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHc
Q 017414 241 EAN------AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 291 (372)
Q Consensus 241 ~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 291 (372)
.|+ ...|..+...+...|++++|...++++.+++|.++.++..+.......
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 122 245666777888889999999999999999998887777766554443
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=4.3e-18 Score=159.43 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=105.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcc-------cCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 017414 109 IVPLNNALIDMYAKSGKIGKALQVFENMK-------NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA 181 (372)
Q Consensus 109 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 181 (372)
-..+|++||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999997764 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCch-HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 017414 182 ILSACCHVGLV-ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 182 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (372)
+|.++++.|+. +.|.++|++|.++ |+.||..+|++++....+.+-++.+.++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999998874 7888999999977 9999999999888766665444444333
No 35
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=3.7e-14 Score=129.20 Aligned_cols=253 Identities=10% Similarity=-0.043 Sum_probs=137.5
Q ss_pred ccHHHHHHHHHHHHh----cCCHHHHHHHHhccCC-CChhhHHHHHHHHHh----CCCccHHHHHHHHHHhCCCCCCHHH
Q 017414 7 LLYKFWNTMVAGYAK----VGDLNNARALFELMTE-KNVISWTTLIAGYAQ----MDQPNEAITLFRRMQVENVKPDEIA 77 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~ 77 (372)
.|+..+..+...|.. .+++++|...|++..+ .++..+..|...|.. .+++++|++.|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 355666666666666 6777777777766554 355666666666666 667777777777766643 4445
Q ss_pred HHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhccc-CCcchHHHHH
Q 017414 78 MLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK----SGKIGKALQVFENMKN-KSVITWTTMI 148 (372)
Q Consensus 78 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~ 148 (372)
+..|...+.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+ .+..++..+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555566655 566677777777666654 34445556666655 5666666666665543 3445555555
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 149 AGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSACCH----VGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 149 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
..|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|..+|++..+. .+...+..+..
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 263 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIAQFRLGY 263 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHH
Confidence 55655 566666666666655543 23344444444443 45555555555555432 12333344444
Q ss_pred HHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHH
Q 017414 221 LLGR----AGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY-----GDVELGECALQHLIK 272 (372)
Q Consensus 221 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~ 272 (372)
.|.. .+++++|...|++.-..-+...+..+...+... +++++|...++++.+
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 4444 445555555554441112333333344444333 444444444444433
No 36
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=2.4e-14 Score=130.41 Aligned_cols=287 Identities=10% Similarity=-0.015 Sum_probs=180.7
Q ss_pred ccHHHHHHHHHHHHh----cCCHHHHHHHHhccCC-CChhhHHHHHHHHHh----CCCccHHHHHHHHHHhCCCCCCHHH
Q 017414 7 LLYKFWNTMVAGYAK----VGDLNNARALFELMTE-KNVISWTTLIAGYAQ----MDQPNEAITLFRRMQVENVKPDEIA 77 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~ 77 (372)
.++..+..+...|.. .+++++|...|++..+ .++..+..|...|.. .+++++|+..|++..+.| +...
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 149 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSG 149 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 456667777777777 7788888888877655 356667777777777 677788888888777654 4555
Q ss_pred HHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhccc-CCcchHHHHH
Q 017414 78 MLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK----SGKIGKALQVFENMKN-KSVITWTTMI 148 (372)
Q Consensus 78 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~ 148 (372)
+..+...|.. .++.++|...|++..+.| +...+..|...|.. .++.++|.++|++..+ .+..++..+.
T Consensus 150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 226 (490)
T 2xm6_A 150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666666665 667777777777777654 45566667777776 6777777777776554 3445666666
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 149 AGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSACCH----VGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 149 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
..|.. .+++++|.++|++..+.| +...+..+...|.. .++.++|..+|++..+. + +...+..+..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~ 299 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-G---NSDGQYYLAH 299 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-T---CHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-C---CHHHHHHHHH
Confidence 66665 667777777777766543 23344444444544 56677777777666632 2 3445555566
Q ss_pred HHHhc-----CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH--
Q 017414 221 LLGRA-----GYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG---DVELGECALQHLIKLEPHNSGNYAILSNIYAI-- 290 (372)
Q Consensus 221 ~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 290 (372)
.|... +++++|...|++.-...+...+..+...+...| +.++|.+.++++.+. .++..+..|+..|..
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGK 377 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC
Confidence 66555 666666666666511123444555555555444 556666666666554 244566666666666
Q ss_pred --cCCchhHHHHHHHHHhCC
Q 017414 291 --LGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 291 --~g~~~~a~~~~~~m~~~g 308 (372)
.+++++|.+.|++..+.|
T Consensus 378 g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhCC
Confidence 566666666666665544
No 37
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=8e-15 Score=134.96 Aligned_cols=201 Identities=12% Similarity=0.061 Sum_probs=138.4
Q ss_pred chHHHHHHHHHh-------cCChh-------HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcC
Q 017414 142 ITWTTMIAGLAL-------HGLGR-------EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG 207 (372)
Q Consensus 142 ~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 207 (372)
..|..++..+.+ .|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+++.+
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--- 349 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--- 349 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---
Confidence 344445555554 57776 7888888877521233567777788888888899999999988884
Q ss_pred CCcC-H-HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHH-HHHcCChhHHHHHHHHHHHhCCCCcchHH
Q 017414 208 IEPK-I-EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAA-SNIYGDVELGECALQHLIKLEPHNSGNYA 282 (372)
Q Consensus 208 ~~~~-~-~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 282 (372)
..|+ . ..|..++..+.+.|++++|..+|++. ...|+ ...|...... +...|+.++|..+|+++.+..|+++..|.
T Consensus 350 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~ 429 (530)
T 2ooe_A 350 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 429 (530)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHH
Confidence 2443 2 47888888888888899999988887 33332 2333322222 33689999999999999999999999999
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHhCCCc-cC-CceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 017414 283 ILSNIYAILGRWNESGKIRKVMRDMGVK-KM-PGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352 (372)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 352 (372)
.++..+.+.|+.++|..+|++....+.. |. ....|. .++.-...+++.+.+..+..+..+...
T Consensus 430 ~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~-------~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 430 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA-------RFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH-------HHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999998776422 21 111220 011112346777777766666555554
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1.1e-15 Score=133.57 Aligned_cols=247 Identities=9% Similarity=-0.011 Sum_probs=204.4
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA-VELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
...|+.+...+.+.|++++|++.|+++++.. +-+...|..+..++...|+ +++|+..++++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3578888999999999999999999999853 3467788899999999996 999999999999986 567889999999
Q ss_pred HHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc-cCchHH
Q 017414 119 MYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH-VGLVEL 194 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~ 194 (372)
++...|++++|+..|+++.+ .+..+|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998874 466789999999999999999999999999875 3367788888888888 566577
Q ss_pred H-----HHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC--------
Q 017414 195 G-----RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG--YLQEAEKLLRRMPFEA-NAAIWGSLLAASNIYG-------- 258 (372)
Q Consensus 195 a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~-------- 258 (372)
| ...++++... -+-+...|..+..++...| ++++|.+.++++...| +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 4788888753 2345678888888898888 6889999888874444 5667888888888764
Q ss_pred C-hhHHHHHHHHH-HHhCCCCcchHHHHHHHHHHc
Q 017414 259 D-VELGECALQHL-IKLEPHNSGNYAILSNIYAIL 291 (372)
Q Consensus 259 ~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 291 (372)
+ .++|..+++++ .+++|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999888888888776654
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=6.8e-16 Score=124.78 Aligned_cols=192 Identities=15% Similarity=0.035 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 017414 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 120 (372)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (372)
..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. |.+...+..+..++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444445555555555555555554432 2234444444455555555555555555555443 33344444455555
Q ss_pred Hhc-----------CCHHHHHHHHHhccc--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 017414 121 AKS-----------GKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 121 ~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
... |++++|+..|++..+ | +..+|..+..++...|++++|+..|++..+.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 544 555555555555442 2 33455555556666666666666666665554 4555555566666
Q ss_pred cccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 187 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 187 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
...|++++|...|+++.+. -+.+...+..+..++...|++++|...+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666532 1234455555666666666666666665544
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=3.8e-15 Score=124.65 Aligned_cols=200 Identities=10% Similarity=-0.105 Sum_probs=149.2
Q ss_pred ccCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh----hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH
Q 017414 3 TLSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--KNV----ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI 76 (372)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 76 (372)
...|.+..++..+...|...|++++|+..|++..+ ++. .+|..+...+...|++++|+..|++..+.. +.+..
T Consensus 31 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 109 (272)
T 3u4t_A 31 AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLD 109 (272)
T ss_dssp HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTH
T ss_pred HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHH
Confidence 45667788899999999999999999999998876 232 248999999999999999999999999864 34667
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcchHHHHHHHHHh
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLAL 153 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 153 (372)
++..+..++...|++++|...+++..+.. +.+...+..+...+...+++++|.+.|++..+ | +...+..+..++..
T Consensus 110 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 188 (272)
T 3u4t_A 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA 188 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 88899999999999999999999888763 45566777777344444588888888887654 2 34566666777777
Q ss_pred cCC---hhHHHHHHHHHHHcC-CCCC------HHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 154 HGL---GREALDMFSRMERAR-VKPN------EITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 154 ~~~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
.|+ +++|...+++..+.. ..|+ ..++..+...|...|++++|...|+++.+
T Consensus 189 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 189 QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 776 777777777766531 1122 13555666666777777777777777764
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=7.1e-15 Score=121.53 Aligned_cols=200 Identities=12% Similarity=-0.003 Sum_probs=111.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhc
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALH 154 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 154 (372)
+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+..++..+...|...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 22334444444445555555555554444332 1334445555555555
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 017414 155 GLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 233 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 233 (372)
|++++|.++++++...+..| +...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|..
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666665555422233 3345555666666667777777777666642 13345666667777777777777777
Q ss_pred HHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 234 LLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 234 ~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
.++++ ... .+...+..+...+...|+.++|...++++.+..|.++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 77665 222 345556666667777777777777777777777766543
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=2.3e-14 Score=120.11 Aligned_cols=223 Identities=10% Similarity=-0.073 Sum_probs=124.6
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCchhHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNA 115 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 115 (372)
+.++..+...+...|++++|++.|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344555555555555666666666555552 233444555555555 556666666666555543 3444555
Q ss_pred HHHHHHh----cCCHHHHHHHHHhcccC-CcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 017414 116 LIDMYAK----SGKIGKALQVFENMKNK-SVITWTTMIAGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 116 l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
+...|.. .+++++|...|++..+. +..++..+...|.. .+++++|++.|++..+.+ +...+..+...|
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 5555555 55666666655554432 33455555555555 666666666666666543 334444555555
Q ss_pred cc----cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHH-
Q 017414 187 CH----VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRM-PFEANAAIWGSLLAASNI- 256 (372)
Q Consensus 187 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~- 256 (372)
.. .+++++|...|++..+. .+...+..+...|.. .+++++|...|++. ... +...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcC
Confidence 54 66666666666666642 134455556666666 66666666666655 212 24455555556665
Q ss_pred ---cCChhHHHHHHHHHHHhCCC
Q 017414 257 ---YGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 257 ---~~~~~~a~~~~~~~~~~~p~ 276 (372)
.+++++|...++++.+.+|+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 66666666666666666654
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=9e-16 Score=126.12 Aligned_cols=207 Identities=13% Similarity=0.062 Sum_probs=108.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhc
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALH 154 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 154 (372)
|..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+ .+..++..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 3333334444444444444444444322 22334444444444444444444444444332 1334445555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 017414 155 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (372)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666555542 234455556666666666677777666666642 233455666666777777777777777
Q ss_pred HhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 235 LRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 235 ~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
+++. ... .+..++..+..++...|++++|...++++.+..|.++.++..+....
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 7665 222 34566777777777778888888888888887777776666554433
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=9.9e-16 Score=128.34 Aligned_cols=240 Identities=8% Similarity=-0.133 Sum_probs=190.2
Q ss_pred HHhcCCHHHHHHHHhccCCC-------ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 017414 19 YAKVGDLNNARALFELMTEK-------NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV 91 (372)
Q Consensus 19 ~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 91 (372)
+...|++++|+..|+.+.+. +..+|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34568899999999988762 35678999999999999999999999999864 45688999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 92 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ |+.......+..+...|++++|...+++...
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999875 55688899999999999999999999998874 4444444555566778999999999988877
Q ss_pred cCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC
Q 017414 170 ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN 243 (372)
Q Consensus 170 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~ 243 (372)
.. +++...+ .++..+...++.++|...+..+... .|+ ...+..+...|...|++++|...|++. ...|+
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 63 3343344 3667778888889999999888732 332 577888999999999999999999998 55664
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHH
Q 017414 244 AAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
. +.....++...|++++|...+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 3 223355677788888887765
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=5e-15 Score=129.53 Aligned_cols=246 Identities=10% Similarity=-0.009 Sum_probs=205.6
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCC-ccHHHHHHHHHHhCCCCCCHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQ-PNEAITLFRRMQVENVKPDEIAML 79 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~ 79 (372)
+.+.+..+|+.+..++.+.|++++|+..|++..+ | +..+|+.+..++...|+ +++|+..|+++++.. +-+...|.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~ 170 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 170 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 4556788899999999999999999999999875 3 56789999999999997 999999999999864 34778999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHh-cC
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLAL-HG 155 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~-~~ 155 (372)
.+..++...|++++|...++++++.. +.+...|..+..++...|++++|+..|+++.+ .+..+|+.+..++.. .|
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999986 66788999999999999999999999999875 356799999999999 66
Q ss_pred ChhHH-----HHHHHHHHHcCCCCCHHHHHHHHHHhcccC--chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC--
Q 017414 156 LGREA-----LDMFSRMERARVKPNEITFIAILSACCHVG--LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG-- 226 (372)
Q Consensus 156 ~~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 226 (372)
..++| +..|++.+... +-+...|..+...+...| ++++|.+.+..+ + ..+.+...+..++.+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcc
Confidence 66888 58898888864 335678888888888888 689999999887 3 44556788889999998874
Q ss_pred -------CHHHHHHHHhhC--CCCCC-HHHHHHHHHHHH
Q 017414 227 -------YLQEAEKLLRRM--PFEAN-AAIWGSLLAASN 255 (372)
Q Consensus 227 -------~~~~a~~~~~~~--~~~~~-~~~~~~l~~~~~ 255 (372)
.+++|.++|+++ ...|. ...|..+...+.
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 358999999998 56664 345666655544
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.69 E-value=1.5e-14 Score=117.16 Aligned_cols=202 Identities=10% Similarity=-0.069 Sum_probs=104.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHh
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLAL 153 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 153 (372)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|++..+ .+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444444445555555555555444432 22344444445555555555555555544432 123344455555555
Q ss_pred c-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 017414 154 H-GLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 154 ~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 231 (372)
. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 5 555555555555554222222 344555555566666666666666666532 122355555666666666666666
Q ss_pred HHHHhhC-CCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 232 EKLLRRM-PFE--ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 232 ~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
...+++. ... .+...+..+...+...|+.+.+..+++.+.+..|.++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 6666655 111 2444455555555666666666666666666666555433
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=5.2e-14 Score=117.95 Aligned_cols=225 Identities=9% Similarity=-0.076 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcccC-CcchHHHHH
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK----SGKIGKALQVFENMKNK-SVITWTTMI 148 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~ 148 (372)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .|++++|...|++..+. +..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5667888889999999999999999999983 345677889999999 99999999999987654 667889999
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 149 AGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSACCH----VGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 149 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
..|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 66788888888888 99999999999999963 3 5677888888
Q ss_pred HHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHH--
Q 017414 221 LLGR----AGYLQEAEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHNSGNYAILSNIYAI-- 290 (372)
Q Consensus 221 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 290 (372)
.|.. .+++++|...|++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999987212456778888899999 9999999999999999876 6688999999999
Q ss_pred --cCCchhHHHHHHHHHhCCCc
Q 017414 291 --LGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 291 --~g~~~~a~~~~~~m~~~g~~ 310 (372)
.+++++|.+.+++..+.|..
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCH
T ss_pred CcccCHHHHHHHHHHHHHcCCH
Confidence 99999999999998776643
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=1.2e-14 Score=120.11 Aligned_cols=202 Identities=10% Similarity=-0.013 Sum_probs=165.5
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDM 119 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (372)
...|..+...+...|++++|++.|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4568888888999999999999999988753 4467788888899999999999999999988875 4567788888999
Q ss_pred HHhcCCHHHHHHHHHhccc--C---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHH
Q 017414 120 YAKSGKIGKALQVFENMKN--K---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 194 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 194 (372)
|...|++++|.++|+++.+ . +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998765 2 34577888888999999999999999988764 3357778888889999999999
Q ss_pred HHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH
Q 017414 195 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAI 246 (372)
Q Consensus 195 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~ 246 (372)
|...++.+.+ ..+.+...+..+...+...|++++|.+.++++ ...|+...
T Consensus 194 A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 194 ARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999884 33456777888888999999999999999887 33454333
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.68 E-value=4.5e-16 Score=137.97 Aligned_cols=292 Identities=12% Similarity=0.008 Sum_probs=224.3
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-C----hhhHHHHHHHHHhCCCccHHHHHHHHHHhC----CCCC
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-N----VISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKP 73 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p 73 (372)
++.....+......+...|++++|...|++..+ | + ...|..+...+...|++++|+..|++.... +..|
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345677788899999999999999999998865 3 2 357888999999999999999999987543 2222
Q ss_pred -CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC----CCC-chhHHHHHHHHHHhcCC--------------------HH
Q 017414 74 -DEIAMLAALSACAQLGAVELGEWIHNYIEQYG----LNT-IVPLNNALIDMYAKSGK--------------------IG 127 (372)
Q Consensus 74 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~--------------------~~ 127 (372)
...++..+...+...|++++|...++++.+.. -++ ...++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 24467788889999999999999999887541 111 14477888999999999 99
Q ss_pred HHHHHHHhccc-----C----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcccCchH
Q 017414 128 KALQVFENMKN-----K----SVITWTTMIAGLALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVE 193 (372)
Q Consensus 128 ~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~ 193 (372)
+|...+++..+ . ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99998887643 1 134788889999999999999999998875311 112 237778888999999999
Q ss_pred HHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCC----HHHHHHHHHHHHHcCChh
Q 017414 194 LGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN----AAIWGSLLAASNIYGDVE 261 (372)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~ 261 (372)
+|...+++..+...-..+ ..++..+...|...|++++|...+++. +..++ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999988743111111 467788899999999999999999887 11122 456778888999999999
Q ss_pred HHHHHHHHHHHhC------CCCcchHHHHHHHHHHcCCchh
Q 017414 262 LGECALQHLIKLE------PHNSGNYAILSNIYAILGRWNE 296 (372)
Q Consensus 262 ~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 296 (372)
+|...++++.++. +....++..++..+...|+...
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9999999998853 2234577788888888887754
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.68 E-value=2.6e-15 Score=133.06 Aligned_cols=267 Identities=10% Similarity=-0.015 Sum_probs=210.3
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-c
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD----EIAMLAALSACAQLGAVELGEWIHNYIEQY----GLNT-I 109 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 109 (372)
....+......+...|++++|+..|+++.+.+ +.+ ...+..+...+...|++++|...++++.+. +.+| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44567778889999999999999999998863 223 356778889999999999999999987643 2122 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----cchHHHHHHHHHhcCC--------------------hhHH
Q 017414 110 VPLNNALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGL--------------------GREA 160 (372)
Q Consensus 110 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a 160 (372)
..++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 56778899999999999999999988764 22 3478889999999999 9999
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHH
Q 017414 161 LDMFSRMERA----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 161 ~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a 231 (372)
.+.+++.... +..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999887642 1111 1346778888999999999999999988753211122 24788889999999999999
Q ss_pred HHHHhhC----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC------cchHHHHHHHHHHcCCchhH
Q 017414 232 EKLLRRM----PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNYAILSNIYAILGRWNES 297 (372)
Q Consensus 232 ~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 297 (372)
...+++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999886 11122 4577888889999999999999999998854322 55788999999999999999
Q ss_pred HHHHHHHHh
Q 017414 298 GKIRKVMRD 306 (372)
Q Consensus 298 ~~~~~~m~~ 306 (372)
.+.+++...
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=1.4e-15 Score=135.37 Aligned_cols=265 Identities=9% Similarity=-0.050 Sum_probs=204.4
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCchhH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE----IAMLAALSACAQLGAVELGEWIHNYIEQY----GL-NTIVPL 112 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 112 (372)
.+..+...+...|++++|+..|+++.+.+ +.+. ..+..+..++...|++++|...++++.+. +. +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 45567778899999999999999998863 2233 46778888899999999999999888754 11 224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccC---------CcchHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKNK---------SVITWTTMIAGLALHGL-----------------GREALDMFSR 166 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 166 (372)
+..+...|...|++++|...|++..+. ...++..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788899999999999999999876531 23478888899999999 9999998888
Q ss_pred HHHc----CCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 167 MERA----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 167 ~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
..+. +..+ ...++..+...+...|++++|...+++..+...-..+ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 1111 2346777888899999999999999988753211112 23778889999999999999999987
Q ss_pred C-CC---CC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC------CcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 238 M-PF---EA----NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH------NSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 238 ~-~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
. .. .. ...++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 11 11 2456788888999999999999999999885432 234888999999999999999999998
Q ss_pred HHhC
Q 017414 304 MRDM 307 (372)
Q Consensus 304 m~~~ 307 (372)
....
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 52
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=1.5e-13 Score=126.50 Aligned_cols=194 Identities=8% Similarity=0.024 Sum_probs=153.1
Q ss_pred chhHHHHHHHHHHh-------cCCHH-------HHHHHHHhccc---C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 109 IVPLNNALIDMYAK-------SGKIG-------KALQVFENMKN---K-SVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 109 ~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
+...|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 34445555555554 68876 89999998764 3 4578999999999999999999999999985
Q ss_pred CCCCC--HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHH-HHhcCCHHHHHHHHhhC-CCCC-CH
Q 017414 171 RVKPN--EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDL-LGRAGYLQEAEKLLRRM-PFEA-NA 244 (372)
Q Consensus 171 ~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~-~~~~g~~~~a~~~~~~~-~~~~-~~ 244 (372)
.|+ ...|..++..+.+.|++++|..+|++..+. +| +...|...+.. +...|+.++|..+|++. ...| +.
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~ 425 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 425 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH
Confidence 444 247888888888999999999999999953 33 33334333322 34689999999999987 3334 57
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc----hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG----NYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
..|..++..+...|+.++|..+|+++....|.++. .|...+......|+.+.+..+++++...
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999998776655 7878888888999999999999988654
No 53
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=3.7e-14 Score=128.49 Aligned_cols=297 Identities=7% Similarity=-0.098 Sum_probs=213.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCC-----------C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhC-----
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTE-----------K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVE----- 69 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----- 69 (372)
....+||.+..++...|++++|++.|++..+ + ...+|+.+..+|...|++++|+..+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3466799999999999999999999987532 2 3467999999999999999999999887652
Q ss_pred C-CCC-CHHHHHHHHHHHHc--cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH---HhcCCHHHHHHHHHhccc---C
Q 017414 70 N-VKP-DEIAMLAALSACAQ--LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY---AKSGKIGKALQVFENMKN---K 139 (372)
Q Consensus 70 ~-~~p-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~---~ 139 (372)
+ ..+ ...++.....++.. .+++++|...|+++.+.. |.++..+..+..++ ...++.++|++.|++..+ .
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 112 34566666555544 457899999999999875 44566666665553 456777888888887653 3
Q ss_pred CcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH
Q 017414 140 SVITWTTMIAGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY 215 (372)
Q Consensus 140 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 215 (372)
+..++..+...+.. .|++++|.+.+++..... +.+...+..+...|...|++++|...++++.+. .+.+..++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 44566666555544 467889999999988764 445677888899999999999999999999853 24456677
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC
Q 017414 216 GCMIDLLGRA-------------------GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 216 ~~li~~~~~~-------------------g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
..+..+|... +.++.|...+++. ...| +...+..+...+...|++++|+..|+++++..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 7776665432 2356677777766 2233 45567888889999999999999999999988
Q ss_pred CCCcc---hHHHHHH-HHHHcCCchhHHHHHHHHHhC
Q 017414 275 PHNSG---NYAILSN-IYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 275 p~~~~---~~~~l~~-~~~~~g~~~~a~~~~~~m~~~ 307 (372)
|++.. .+..++. .+...|++++|+..|++....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 75432 2334443 345789999999999887654
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=2.1e-14 Score=116.34 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=173.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017414 107 NTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAIL 183 (372)
Q Consensus 107 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 183 (372)
+.+...+..++..+...|++++|.+.|++..+ .+..++..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 34567788899999999999999999998764 356789999999999999999999999998874 34677888899
Q ss_pred HHhccc-CchHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCC
Q 017414 184 SACCHV-GLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGD 259 (372)
Q Consensus 184 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 259 (372)
..+... |++++|...++.+.+ .+..|+ ...+..+..++...|++++|...++++ ...| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999986 233343 578888999999999999999999987 3334 57888999999999999
Q ss_pred hhHHHHHHHHHHHhCC-CCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 260 VELGECALQHLIKLEP-HNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+++|...++++.+..| .++..+..+...+...|+.+.|..+++.+...
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999 88889999999999999999999999988654
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.67 E-value=3.2e-15 Score=128.65 Aligned_cols=263 Identities=10% Similarity=-0.009 Sum_probs=165.1
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chhHHH
Q 017414 44 TTLIAGYAQMDQPNEAITLFRRMQVENVKPD----EIAMLAALSACAQLGAVELGEWIHNYIEQY----GLNT-IVPLNN 114 (372)
Q Consensus 44 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 114 (372)
......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.++ ...++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334445555666666666666655532 112 234445555566666666666665554432 1111 234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-----CC----cchHHHHHHHHHhcCC--------------------hhHHHHHHH
Q 017414 115 ALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGL--------------------GREALDMFS 165 (372)
Q Consensus 115 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~ 165 (372)
.+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|.+.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 566666666666666666665432 11 2256666666667777 677777766
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 166 RMERA----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 166 ~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
+.... +..| ....+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65432 1111 1345666777788888888888888877642111111 2367778888888899998888887
Q ss_pred hC----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC------CcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 237 RM----PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPH------NSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 237 ~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
+. +..++ ..++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76 11112 456777788888999999999999988875432 13477888999999999999999998
Q ss_pred HHHhC
Q 017414 303 VMRDM 307 (372)
Q Consensus 303 ~m~~~ 307 (372)
+....
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 87653
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=5.1e-15 Score=121.59 Aligned_cols=197 Identities=9% Similarity=0.042 Sum_probs=156.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017414 108 TIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS 184 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 184 (372)
.....+..+...+...|++++|...|++..+ .+..++..+...+...|++++|++.+++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677888999999999999999998865 356788899999999999999999999998874 346778888999
Q ss_pred HhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVEL 262 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~ 262 (372)
.+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++ ... .+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999864 3456788899999999999999999999987 323 467788899999999999999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 263 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 263 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
|...++++.+..|.++.++..++.+|...|++++|.+.+++....
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998664
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=5.3e-15 Score=131.53 Aligned_cols=268 Identities=12% Similarity=0.020 Sum_probs=210.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-h----hhHHHHHHHHHhCCCccHHHHHHHHHHhC----CCCC-CH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--KN-V----ISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKP-DE 75 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~ 75 (372)
....+..+...+...|++++|+..|++..+ |+ . ..|..+...+...|++++|+..|++..+. +..| ..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566788889999999999999998875 33 2 47889999999999999999999988653 1122 34
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCchhHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 017414 76 IAMLAALSACAQLGAVELGEWIHNYIEQY----GL-NTIVPLNNALIDMYAKSGK-----------------IGKALQVF 133 (372)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~ 133 (372)
..+..+...+...|++++|...++++.+. +- +....++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 57778889999999999999999988754 11 2235578889999999999 99999998
Q ss_pred Hhccc-----C----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhcccCchHHHHHHH
Q 017414 134 ENMKN-----K----SVITWTTMIAGLALHGLGREALDMFSRMERARVK-PN----EITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 134 ~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
++..+ . ...++..+...|...|++++|++.+++..+.... ++ ..++..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 87643 1 2347888999999999999999999998764211 12 236778889999999999999999
Q ss_pred HHhHHhcCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC---CC----CHHHHHHHHHHHHHcCChhHHHHHH
Q 017414 200 NIMKSRYGIEP----KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF---EA----NAAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 200 ~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
+++.....-.. ...++..+...|...|++++|...+++. .. .+ ...++..+...+...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 98875321111 1467788899999999999999999887 11 11 2346778888999999999999999
Q ss_pred HHHHHhCC
Q 017414 268 QHLIKLEP 275 (372)
Q Consensus 268 ~~~~~~~p 275 (372)
+++.++.+
T Consensus 367 ~~al~~~~ 374 (411)
T 4a1s_A 367 EQHLQLAX 374 (411)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 99999765
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.62 E-value=1.1e-14 Score=125.32 Aligned_cols=268 Identities=11% Similarity=0.005 Sum_probs=206.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-----hhhHHHHHHHHHhCCCccHHHHHHHHHHhC----CCCC-CH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--KN-----VISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKP-DE 75 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~ 75 (372)
+...+......+...|++++|...|++..+ |+ ...+..+...+...|++++|++.+++..+. +..| ..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 445666778889999999999999999865 32 357889999999999999999999987653 2122 24
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCc----hhHHHHHHHHHHhcCC--------------------HHHHH
Q 017414 76 IAMLAALSACAQLGAVELGEWIHNYIEQYGL-NTI----VPLNNALIDMYAKSGK--------------------IGKAL 130 (372)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~ 130 (372)
.++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5677888999999999999999998875421 111 3477888999999999 99999
Q ss_pred HHHHhccc-----C----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcccCchHHHH
Q 017414 131 QVFENMKN-----K----SVITWTTMIAGLALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 131 ~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~ 196 (372)
..+++..+ . ...++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99887642 1 234788889999999999999999998875311 111 236778888999999999999
Q ss_pred HHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhC-CC---CC----CHHHHHHHHHHHHHcCChhHHH
Q 017414 197 RYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PF---EA----NAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~-~~---~~----~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
..+++..+...-..+ ..++..+...|...|++++|...+++. .. .. ...++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999988743111111 467788889999999999999999887 11 11 2446778888999999999999
Q ss_pred HHHHHHHHhCC
Q 017414 265 CALQHLIKLEP 275 (372)
Q Consensus 265 ~~~~~~~~~~p 275 (372)
..++++.++.+
T Consensus 324 ~~~~~a~~~~~ 334 (338)
T 3ro2_A 324 HFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 59
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.62 E-value=5e-13 Score=129.58 Aligned_cols=264 Identities=11% Similarity=0.094 Sum_probs=167.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
+..+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|++.|....+.. ++....+.++.+|++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 4556666666666777777776666443 455566666666667777777777666655532 222222236666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
.+++++...+. + .++...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++.
T Consensus 1180 l~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1180 TNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred hcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 66666433332 1 234444555677777777777777777664 36777777777777777777777654
Q ss_pred HHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHH
Q 017414 168 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAA 245 (372)
Q Consensus 168 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~ 245 (372)
.+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++.. +..+ ...
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence 244666666677777777777666554322 35556678888888899999999988776 5444 344
Q ss_pred HHHHHHHHHHHc--CChhHHHHHHHHHHHhCC-----CCcchHHHHHHHHHHcCCchhHHH
Q 017414 246 IWGSLLAASNIY--GDVELGECALQHLIKLEP-----HNSGNYAILSNIYAILGRWNESGK 299 (372)
Q Consensus 246 ~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 299 (372)
.|..+..++.+. ++..++.+.|..-..+.| .+...|..+...|.+.|+|+.|..
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 566666666654 344445555554433333 355678888999999999998884
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.62 E-value=1e-14 Score=132.10 Aligned_cols=208 Identities=9% Similarity=-0.071 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 017414 91 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI-GKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
++++...++...... +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+..+|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556666555432 44677888888999999999 999999988764 3467899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHhccc---------CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc--------CCHH
Q 017414 167 MERARVKPNEITFIAILSACCHV---------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA--------GYLQ 229 (372)
Q Consensus 167 ~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 229 (372)
..+. .|+...+..+...+... |++++|...++++.+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9886 46678888899999999 9999999999999853 244678899999999988 9999
Q ss_pred HHHHHHhhC-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 230 EAEKLLRRM-PFEA----NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 230 ~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
+|...|++. ...| +...|..+..++...|++++|...++++.+++|.++.++..+..++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998 4445 7788999999999999999999999999999999999999999999999999999875543
No 61
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.62 E-value=7.5e-13 Score=128.38 Aligned_cols=259 Identities=13% Similarity=0.048 Sum_probs=181.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC-------------------------CChhhHHHHHHHHHhCCCccHHHHHHHHHH
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTE-------------------------KNVISWTTLIAGYAQMDQPNEAITLFRRMQ 67 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 67 (372)
.-+...+...|.+++|..+|++... .+..+|..+..++.+.|++++|+..|.+.
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 3355666666666666666666532 23456777777777777777777777543
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHH
Q 017414 68 VENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTM 147 (372)
Q Consensus 68 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 147 (372)
-|...|..++.++.+.|++++|.+++...++.. ++....+.++.+|++.+++++...+. ..++...|..+
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQV 1201 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHH
Confidence 355667777777777777777777777766653 33333334777777777777544332 34455566677
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 227 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 227 (372)
...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+++.. +..+|..+..+|...|+
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhH
Confidence 77777788888888877763 367777777777788888877777664 45677777777777888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 228 LQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
+..|......+ ..++..+..++..|...|.+++|+.+++..+.++|.+...|..|+.+|.+. +.++..+.+
T Consensus 1266 f~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy-~peklmEhl 1336 (1630)
T 1xi4_A 1266 FRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHL 1336 (1630)
T ss_pred HHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC-CHHHHHHHH
Confidence 87777766643 345566778888999999999999999999999998888998888888775 333333333
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=1.1e-13 Score=108.60 Aligned_cols=165 Identities=15% Similarity=0.076 Sum_probs=123.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 017414 140 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI 219 (372)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 219 (372)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+..+... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34567777777777777777777777777653 235566777777777888888888888777743 234556666777
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhH
Q 017414 220 DLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 297 (372)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 297 (372)
..+...++++.|...+.+. ...| +...+..+...+...|++++|+..++++.+.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7777888888888877776 2233 5667777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhC
Q 017414 298 GKIRKVMRDM 307 (372)
Q Consensus 298 ~~~~~~m~~~ 307 (372)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888877553
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=1.2e-13 Score=117.86 Aligned_cols=183 Identities=12% Similarity=0.068 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-Ccc-hHHHHHHHHHhcCChhHHHHHHHHH
Q 017414 92 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVI-TWTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
++|..+|++.++.-.+.+...|..++..+.+.|++++|..+|++..+ | +.. +|..++..+.+.|++++|.++|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555521122344555555555555555555555555443 2 122 5555555555666666666666665
Q ss_pred HHcCCCCCHHHHHHHHHHh-cccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-C---CCC
Q 017414 168 ERARVKPNEITFIAILSAC-CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P---FEA 242 (372)
Q Consensus 168 ~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~---~~~ 242 (372)
.+.+ +++...|....... ...|+.++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++. . ..|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 5542 12222332222221 12466666666666666431 234556666666666666666666666665 1 233
Q ss_pred --CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 243 --NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 243 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
....|..++......|+.+.|..+++++.+..|.+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 34456666666666666666666666666666653
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=2.9e-14 Score=125.62 Aligned_cols=286 Identities=8% Similarity=-0.037 Sum_probs=203.1
Q ss_pred HHHhcCCHHHHHHHHhccCC------CC--hhhHHHHHHH--HHhCCCccHHH-----------HHHHHHHhCCCCCCHH
Q 017414 18 GYAKVGDLNNARALFELMTE------KN--VISWTTLIAG--YAQMDQPNEAI-----------TLFRRMQVENVKPDEI 76 (372)
Q Consensus 18 ~~~~~~~~~~A~~~~~~~~~------~~--~~~~~~l~~~--~~~~~~~~~A~-----------~~~~~m~~~~~~p~~~ 76 (372)
.+.+.+++++|..+++++.+ .| ...|..++.. ..-.+..+.+. +.++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 34679999999999988753 22 3333443322 11223333333 6666665421 2222
Q ss_pred HH------HHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC
Q 017414 77 AM------LAALSACAQLGAVELGEWIHNYIEQY----GLNT-IVPLNNALIDMYAKSGKIGKALQVFENMKN-----KS 140 (372)
Q Consensus 77 ~~------~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 140 (372)
.+ ......+...|++++|...+++..+. +-++ ...++..+...|...|++++|...+++..+ ++
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 22 22566778899999999999999864 2112 346788899999999999999999987653 11
Q ss_pred -----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcccCchHHHHHHHHHhHHh---cC
Q 017414 141 -----VITWTTMIAGLALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGRRYFNIMKSR---YG 207 (372)
Q Consensus 141 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 207 (372)
..+++.+..+|...|++++|++.+++..+... .++ ..++..+...|...|++++|...+++..+- .+
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 24788899999999999999999998875311 111 247788899999999999999999988751 12
Q ss_pred C-CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-----CC-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhCCC
Q 017414 208 I-EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-----EA-NAAIWGSLLAASNIYGD---VELGECALQHLIKLEPH 276 (372)
Q Consensus 208 ~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~-----~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~ 276 (372)
. +....++..+..+|...|++++|...+++. .. .| ....+..+...+...|+ .++|..++++. ...|.
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~ 337 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYAD 337 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHH
Confidence 2 334577889999999999999999999887 11 12 22335666777888888 66666666665 22233
Q ss_pred CcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 277 NSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 277 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
....+..++..|...|++++|...+++...
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455788999999999999999999998854
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=1.3e-12 Score=111.54 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=131.4
Q ss_pred ccHHHHHHHHHHHHhc----CCH----HHHHHHHhccCC---CChhhHHHHHHHHH-------hCCCc-------cHHHH
Q 017414 7 LLYKFWNTMVAGYAKV----GDL----NNARALFELMTE---KNVISWTTLIAGYA-------QMDQP-------NEAIT 61 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~---~~~~~~~~l~~~~~-------~~~~~-------~~A~~ 61 (372)
.+...|...+....+. ++. ++|..+|++..+ .++..|..++..+. +.|++ ++|..
T Consensus 6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 3445566666654443 222 556666666654 24556666666554 24665 66777
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc-hh-HHHHHHHHHHhcCCHHHHHHHHHhccc
Q 017414 62 LFRRMQVENVKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI-VP-LNNALIDMYAKSGKIGKALQVFENMKN 138 (372)
Q Consensus 62 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 138 (372)
+|++..+. +.| +...|..++..+.+.|++++|..+|+++.+. .|+ .. +|..++..+.+.|++++|..+|++..+
T Consensus 86 ~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 86 IYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 77766652 123 4446666666666667777777777766663 232 32 566666666667777777777766554
Q ss_pred C---CcchHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc--CH
Q 017414 139 K---SVITWTTMIAGLA-LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP--KI 212 (372)
Q Consensus 139 ~---~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 212 (372)
. +...|...+.... ..|++++|.++|++..+.. +-+...+..++..+.+.|++++|..+|+++.....++| ..
T Consensus 163 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 2 2223332222211 2566777777777666542 22455566666666666777777777777664312343 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
..|..++..+.+.|+.+.|..+++++
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666666666667777777666665
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=123.02 Aligned_cols=241 Identities=11% Similarity=0.038 Sum_probs=121.9
Q ss_pred hhhHHHHHHHHHhCCCccHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CC
Q 017414 40 VISWTTLIAGYAQMDQPNEAITLFRRMQVE-------NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY------GL 106 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 106 (372)
..++..+...+...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...++++.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777777788888888888888777662 11223455666777777777777777777776653 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----------CcchHHHHHHHHHhcCChhHHHHHHHHHHHc----
Q 017414 107 -NTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----------SVITWTTMIAGLALHGLGREALDMFSRMERA---- 170 (372)
Q Consensus 107 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 170 (372)
+....++..+...|...|++++|...|++..+. ...++..+...+...|++++|++++++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 223455666667777777777777766654421 1234455555555555566665555555442
Q ss_pred --CCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhHHhc------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 017414 171 --RVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRY------GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 241 (372)
Q Consensus 171 --~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 241 (372)
+..|. ..++..+...+...|++++|...++++.+.. ...+.......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 11111 2344445555555555555555555555310 00000000000
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 242 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
....+..+...+...+.+.++...++......|....++..++.+|...|++++|.+.+++..
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 243 -HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp -HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 011111122223333444555555555555555555666666666666666666666666553
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=4.6e-13 Score=105.04 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=105.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
++.+|..+...|.+.|++++|+..|++..+ | +..+|..+..++.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456677777777777777777777776654 2 45566777777777777777777777766543 3345555566666
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 161 (372)
+...++++.+...+....+.. +.+...+..+..+|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 667777777777777766653 44556666666677777777777776666543 23456666666666666666666
Q ss_pred HHHHHHHHc
Q 017414 162 DMFSRMERA 170 (372)
Q Consensus 162 ~~~~~~~~~ 170 (372)
+.|++..+.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 666666653
No 68
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=3.3e-13 Score=121.38 Aligned_cols=168 Identities=10% Similarity=-0.015 Sum_probs=78.5
Q ss_pred HHHHHhcccCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc----CchHHHHHHHHHh
Q 017414 130 LQVFENMKNKSVITWTTMIAGLALHG---LGREALDMFSRMERARVKPNEITFIAILSACCHV----GLVELGRRYFNIM 202 (372)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~ 202 (372)
..+++.....++.++..+...|...| ++++|++.|++..+.| .++...+..+...|... +++++|..+|++.
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 33344444445555666666666666 5666666666665554 23333333344444333 4555555555554
Q ss_pred HHhcCCCcCHHHHHHHHHH-H--HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHhC
Q 017414 203 KSRYGIEPKIEQYGCMIDL-L--GRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG-----DVELGECALQHLIKLE 274 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~ 274 (372)
. . + ++..+..|... | ...+++++|...|++.-..-+...+..|...|. .| ++++|...|+++.
T Consensus 244 a-~-g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--- 314 (452)
T 3e4b_A 244 A-P-G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--- 314 (452)
T ss_dssp G-G-G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---
T ss_pred c-C-C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---
Confidence 4 1 1 23333334433 2 234555555555554411123344444444443 23 4555555555544
Q ss_pred CCCcchHHHHHHHHHH----cCCchhHHHHHHHHHhC
Q 017414 275 PHNSGNYAILSNIYAI----LGRWNESGKIRKVMRDM 307 (372)
Q Consensus 275 p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~ 307 (372)
|.++..+..|+..|.. ..++++|...|++..+.
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 4444455555544443 22455555555544443
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=1.3e-11 Score=108.15 Aligned_cols=264 Identities=14% Similarity=0.032 Sum_probs=171.5
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCc----hhHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI----AMLAALSACAQLGAVELGEWIHNYIEQYGL-NTI----VPLN 113 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~ 113 (372)
+......+...|++++|...+++........+.. .+..+...+...|++++|...+++..+... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344455667788888888887776653222222 345556667777888888887777664311 011 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc----------C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C--CHHH
Q 017414 114 NALIDMYAKSGKIGKALQVFENMKN----------K-SVITWTTMIAGLALHGLGREALDMFSRMERARVK--P--NEIT 178 (372)
Q Consensus 114 ~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p--~~~~ 178 (372)
..+...+...|++++|...+++..+ + ...++..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 5677778888888888888776542 1 1134566777788888888888888887754221 1 2345
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHH-----HHHHHHHhcCCHHHHHHHHhhC-CCCCC-----HHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG-----CMIDLLGRAGYLQEAEKLLRRM-PFEAN-----AAIW 247 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~-~~~~~-----~~~~ 247 (372)
+..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++. ...|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66777788888899999888888764311111111111 2334467889999999988887 22221 2245
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCCC-----C-cchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 248 GSLLAASNIYGDVELGECALQHLIKLEPH-----N-SGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..+...+...|++++|...++.+.+..+. . ..++..+..++...|++++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777888889999999998888764321 1 13666778888899999999988887654
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=5.1e-13 Score=117.49 Aligned_cols=300 Identities=8% Similarity=-0.034 Sum_probs=206.7
Q ss_pred CccHHHHHHHHHHH--HhcCCHHHHHHHHhccCC------C--ChhhHHHHHHHH--HhCCCccHHH---------HHHH
Q 017414 6 RLLYKFWNTMVAGY--AKVGDLNNARALFELMTE------K--NVISWTTLIAGY--AQMDQPNEAI---------TLFR 64 (372)
Q Consensus 6 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~~~~--~~~~~~~~A~---------~~~~ 64 (372)
-|+..+-+.|-+.| .+.+++++|..+++++.+ . +...|..|+..- .-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35666667777777 789999999999987643 2 233444444321 1112233333 6666
Q ss_pred HHHhCCCCCCH-H---HHHHHHHHHHccCChHHHHHHHHHHHHcC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 017414 65 RMQVENVKPDE-I---AMLAALSACAQLGAVELGEWIHNYIEQYG--LN---TIVPLNNALIDMYAKSGKIGKALQVFEN 135 (372)
Q Consensus 65 ~m~~~~~~p~~-~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 135 (372)
.+.....+.+. . .+......+...|++++|...++++.+.. ++ ....++..+..+|...|++++|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 65442211111 1 22334556778999999999999988642 11 1246778899999999999999999887
Q ss_pred ccc-----CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcccCchHHHHHHHH
Q 017414 136 MKN-----KS-----VITWTTMIAGLALHGLGREALDMFSRMERA----RVKP-NEITFIAILSACCHVGLVELGRRYFN 200 (372)
Q Consensus 136 ~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 200 (372)
..+ ++ ..+++.+..+|...|++++|++.|++..+. +..+ ...++..+...|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 653 12 347888999999999999999999988763 1111 23467788899999999999999999
Q ss_pred HhHHhc---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC----CC--CCC-HHHHHHHHHHHHHcCC---hhHHHHHH
Q 017414 201 IMKSRY---GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PF--EAN-AAIWGSLLAASNIYGD---VELGECAL 267 (372)
Q Consensus 201 ~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~--~~~-~~~~~~l~~~~~~~~~---~~~a~~~~ 267 (372)
+..+-. +.+....++..+..+|.+.|++++|...+++. .. .|. ...+..+...+...++ ..+|...+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 988511 22233677888999999999999999999887 11 222 3345555556667777 66666666
Q ss_pred HHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 268 QHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 268 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
++.. ..|.....+..++..|...|++++|...|++...
T Consensus 327 ~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6521 1233445778899999999999999999988743
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=5e-14 Score=120.01 Aligned_cols=249 Identities=12% Similarity=0.028 Sum_probs=164.9
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--------C---ChhhHHHHHHHHHhCCCccHHHHHHHHHHhC----
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--------K---NVISWTTLIAGYAQMDQPNEAITLFRRMQVE---- 69 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---- 69 (372)
++.+..++..+...+...|++++|..+|+++.+ . ...++..+...+...|++++|+..|++..+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999998765 1 2357888999999999999999999998764
Q ss_pred --CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 017414 70 --NVKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQY------GLNT-IVPLNNALIDMYAKSGKIGKALQVFENMKNK 139 (372)
Q Consensus 70 --~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 139 (372)
+-.| ...++..+...+...|++++|...++++.+. +..| ....+..+...|...|++++|.++|++..+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2223 3567888999999999999999999998865 2222 4567888999999999999999999887532
Q ss_pred --------C---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCC
Q 017414 140 --------S---VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGI 208 (372)
Q Consensus 140 --------~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 208 (372)
+ ..++..+...|...|++++|.+.++++.+.. |+. .+..+- .......
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~--------------- 241 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIW--------------- 241 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHH---------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHH---------------
Confidence 2 3478889999999999999999999998751 110 000000 0000000
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCC
Q 017414 209 EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
.....+..+...+...+.+.++...++.. ...| +..++..+..++...|++++|...++++.++.|
T Consensus 242 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 242 -MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp -HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 00111122222333344444445555444 2222 334566666666777777777777777666554
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=6.3e-13 Score=120.29 Aligned_cols=208 Identities=8% Similarity=-0.036 Sum_probs=147.4
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 017414 56 PNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV-ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 134 (372)
Q Consensus 56 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 134 (372)
+++++..+++..... +.+...+..+..++...|++ ++|...++++.+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566666776665532 34666777777777778888 88888888777764 4456777777888888888888888887
Q ss_pred hccc--CCcchHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc--------CchHHH
Q 017414 135 NMKN--KSVITWTTMIAGLALH---------GLGREALDMFSRMERARVKPNEITFIAILSACCHV--------GLVELG 195 (372)
Q Consensus 135 ~~~~--~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a 195 (372)
+..+ |+..++..+...|... |++++|++.|++..+.. +.+...+..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 7654 4456677777777777 78888888888877763 33466777777777777 778888
Q ss_pred HHHHHHhHHhcCCC---cCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHH
Q 017414 196 RRYFNIMKSRYGIE---PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQ 268 (372)
Q Consensus 196 ~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 268 (372)
...|+++.+. -+ .+...|..+..+|...|++++|...|++. ...| +...+..+..++...|++++|...+.
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888887743 12 36677778888888888888888888776 3334 45567777777777777777776543
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.50 E-value=7.8e-13 Score=124.64 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=121.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
..+|+.+...|.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|...|+++.+- -+-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3466667777777777777777777776653 224566777777777777777777777777742 1234677777788
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHH
Q 017414 221 LLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESG 298 (372)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 298 (372)
+|...|++++|++.|++. .+.| +...|..+..++...|++++|+..|+++++++|+++.++..|+.++...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 888888888888888776 4444 56678888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHH
Q 017414 299 KIRKVMR 305 (372)
Q Consensus 299 ~~~~~m~ 305 (372)
+.+++..
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877764
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=4.7e-12 Score=111.49 Aligned_cols=230 Identities=8% Similarity=-0.003 Sum_probs=181.1
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC------CCchhHH
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVE----NVKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGL------NTIVPLN 113 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~ 113 (372)
.....+...|++++|+..|++..+. +-.+ ...++..+..++...|+++.|...+.+..+... +....++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3667788999999999999999764 1112 235788889999999999999999999886411 1124578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc-----CC----cchHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHH
Q 017414 114 NALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMERA----RV-KPNEITF 179 (372)
Q Consensus 114 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~ 179 (372)
+.+..+|...|++++|...|++..+ ++ ..++..+..+|...|++++|++.+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8899999999999999999988763 11 147888999999999999999999998872 23 3345678
Q ss_pred HHHHHHhcccCchHHHHHHHHHhHHhc---CCCcCHHHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCC-HHHHHHHHH
Q 017414 180 IAILSACCHVGLVELGRRYFNIMKSRY---GIEPKIEQYGCMIDLLGRAGY---LQEAEKLLRRMPFEAN-AAIWGSLLA 252 (372)
Q Consensus 180 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~-~~~~~~l~~ 252 (372)
..+...+...|++++|...+++..+-. +-+.....+..+...|...|+ +++|+.++++.+..|+ ...+..+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 889999999999999999999887431 112223345678888889999 8999999999854443 346777888
Q ss_pred HHHHcCChhHHHHHHHHHHHhC
Q 017414 253 ASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
.|...|++++|...++++.++.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998844
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=3.1e-12 Score=99.97 Aligned_cols=158 Identities=14% Similarity=0.063 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 017414 112 LNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH 188 (372)
Q Consensus 112 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 188 (372)
.+..+...+...|++++|...|+++.+. +..++..+...+...|++++|...++++.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------- 72 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------- 72 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Confidence 3444555555556666666655555432 23344444445555555555555555544431
Q ss_pred cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHH
Q 017414 189 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECA 266 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 266 (372)
+.+...+..+...+...|++++|.+.++++ . ...+...+..+...+...|++++|...
T Consensus 73 --------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 73 --------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 223344444445555555555555555444 1 112344555555556666666666666
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 267 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 267 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
++++.+..|.++.++..++.++...|++++|.+.+++...
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666665543
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=1e-11 Score=96.87 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=112.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 84 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 84 (372)
....|..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 355677788888888888888888888775 355677778888888888888888888877653 3456677777777
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 161 (372)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+ .+..++..+...+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 777888888888887777664 44566666667777777777777777666543 23445566666666666666666
Q ss_pred HHHHHHHH
Q 017414 162 DMFSRMER 169 (372)
Q Consensus 162 ~~~~~~~~ 169 (372)
+.+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=7.8e-12 Score=101.57 Aligned_cols=204 Identities=12% Similarity=0.019 Sum_probs=158.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHH
Q 017414 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIA 149 (372)
Q Consensus 73 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~ 149 (372)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..|++..+. +..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4667888899999999999999999999999864377777777999999999999999999988753 4468889999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC---HHHHHHHH
Q 017414 150 GLALHGLGREALDMFSRMERARVKPNE-------ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK---IEQYGCMI 219 (372)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li 219 (372)
+|...|++++|++.+++..+.. +.+. ..+..+...+...|++++|...|+++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999998864 2234 4577778888899999999999999984 3554 56777888
Q ss_pred HHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 220 DLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
.+|...|+. .++++ . ...+...+.... ....+.+++|...++++.++.|.++.+...+...
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 888766543 22222 1 122344444433 3345678999999999999999988776666544
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.45 E-value=2.4e-11 Score=106.44 Aligned_cols=263 Identities=11% Similarity=-0.024 Sum_probs=190.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--C--Ch----hhHHHHHHHHHhCCCccHHHHHHHHHHhCCC-CCCH----HH
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTE--K--NV----ISWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPDE----IA 77 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~----~~ 77 (372)
.+......+...|++++|...+++... | +. .+++.+...+...|++++|...+++...... .++. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 445556677789999999999887543 2 22 2567778889999999999999998865311 1122 23
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhccc--C------Ccc
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQY----GLN--T-IVPLNNALIDMYAKSGKIGKALQVFENMKN--K------SVI 142 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~ 142 (372)
+..+...+...|++++|...++...+. +.+ | ....+..+...+...|++++|...+++..+ + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566778889999999999999988753 222 2 245567788999999999999999987653 1 124
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHH----HHHHHhcccCchHHHHHHHHHhHHhcCCCc---CHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPN--EITFI----AILSACCHVGLVELGRRYFNIMKSRYGIEP---KIE 213 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 213 (372)
++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++..... ...+ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~ 254 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHH
Confidence 677888899999999999999999876421211 11111 2334477899999999999998742 2111 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhC
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM-------PFEANA-AIWGSLLAASNIYGDVELGECALQHLIKLE 274 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~-------~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 274 (372)
.+..+...+...|++++|...+++. +..++. ..+..+..++...|+.++|...++++....
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 5667888999999999999999876 111122 255666778899999999999999998754
No 79
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=1.3e-12 Score=117.44 Aligned_cols=279 Identities=16% Similarity=0.071 Sum_probs=188.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-CChhhHHHHHHHHHhCCCc---cHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 017414 14 TMVAGYAKVGDLNNARALFELMTE-KNVISWTTLIAGYAQMDQP---NEAITLFRRMQVENVKPDEIAMLAALSACAQLG 89 (372)
Q Consensus 14 ~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 89 (372)
.+...+.+.|++++|.++|.+..+ .+..++..|...|...|++ ++|++.|++..+. +...+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 367788899999999999999876 4566777788888888888 8999999998753 4555666666455554
Q ss_pred -----ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH---HHHHHHhcc-cCCcchHHHHHHHHHhcCChhHH
Q 017414 90 -----AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK---ALQVFENMK-NKSVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 90 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 160 (372)
+.++|...|++..+.|. ++ .+..|...|...+..++ +.+.+.... ..+..++..+...|...+.++++
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 78899999999999763 33 56668888887765444 444444443 34677888999999998866655
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcccC---chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc----CCHHHHHH
Q 017414 161 LDMFSRMERARVKPNEITFIAILSACCHVG---LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA----GYLQEAEK 233 (372)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~ 233 (372)
........+.-...+...+..+...|...| +.++|...|++..+. + +++...+..+...|... +++++|..
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR-G-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 555333332211222236777888888899 999999999999863 3 55666667788888655 79999999
Q ss_pred HHhhCCCCCCHHHHHHHHHH-H--HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC-----CchhHHHHHHHHH
Q 017414 234 LLRRMPFEANAAIWGSLLAA-S--NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG-----RWNESGKIRKVMR 305 (372)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~m~ 305 (372)
.|++.- .-+...+..+... + ...+++++|...|+++.+.+ ++.++..|+..|. .| ++++|.+.|++..
T Consensus 239 ~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 239 LLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 999986 4567777777776 4 56899999999999998765 6778999999988 55 9999999998765
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=2.8e-12 Score=120.85 Aligned_cols=163 Identities=11% Similarity=0.040 Sum_probs=144.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHH
Q 017414 5 SRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAA 81 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 81 (372)
.|.+..+|+.+..+|.+.|++++|+..|++..+ | +..+|+.+..+|.+.|++++|++.|++.++.. +-+...|..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 466789999999999999999999999999875 4 57789999999999999999999999999853 3357789999
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChh
Q 017414 82 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGR 158 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 158 (372)
..++...|++++|.+.|+++.+.. +.+...|+.+..+|.+.|++++|++.|++..+ .+..+|..+..++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999999875 55688899999999999999999999998764 35678999999999999999
Q ss_pred HHHHHHHHHHH
Q 017414 159 EALDMFSRMER 169 (372)
Q Consensus 159 ~a~~~~~~~~~ 169 (372)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=4.5e-12 Score=103.04 Aligned_cols=190 Identities=12% Similarity=-0.044 Sum_probs=137.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccc----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017414 108 TIVPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAIL 183 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 183 (372)
.++..+..+...+...|++++|...|++..+ ++...+..+..++...|++++|++.|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 3557777788888889999999998887653 455667778888888999999999998888763 22456777788
Q ss_pred HHhcccCchHHHHHHHHHhHHhcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHH
Q 017414 184 SACCHVGLVELGRRYFNIMKSRYGIEPKI-------EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN---AAIWGSLLA 252 (372)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~ 252 (372)
..+...|++++|...+++..+. .+.+. ..|..+...+...|++++|...|++. ...|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 8888889999999988888853 22334 45777778888888888888888887 55665 345666666
Q ss_pred HHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
++... +...++++..+.+.++..|..+ .....+.+++|...+++....
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 66543 4455667777766555455443 344556789999999887654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=6.8e-11 Score=103.85 Aligned_cols=230 Identities=11% Similarity=0.030 Sum_probs=178.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-----CC-chh
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENV-KPD----EIAMLAALSACAQLGAVELGEWIHNYIEQYGL-----NT-IVP 111 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~ 111 (372)
|......+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+.+..+... .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34455667889999999999999876411 122 34677888999999999999999998875411 11 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----cchHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHH
Q 017414 112 LNNALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMER-----ARVKPNEI 177 (372)
Q Consensus 112 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~ 177 (372)
+++.+..+|...|++++|.+.|++..+ ++ ..++..+..+|...|++++|++.+++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 678899999999999999999987753 12 24788899999999999999999999887 42 22367
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCC---CcCHHHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCH-HHHHHH
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGI---EPKIEQYGCMIDLLGRAGY---LQEAEKLLRRMPFEANA-AIWGSL 250 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~l 250 (372)
++..+...+.+.|++++|...+++..+-..- +.....+..+...|...|+ +.+|+..+++.+..|+. ..+..+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 342 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7888999999999999999999998864222 2223455666677778888 89999999987544433 456678
Q ss_pred HHHHHHcCChhHHHHHHHHHHHh
Q 017414 251 LAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
...|...|++++|...++++.+.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=7.1e-12 Score=104.92 Aligned_cols=153 Identities=11% Similarity=0.033 Sum_probs=83.5
Q ss_pred HhCCCccHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCchhHHHHH
Q 017414 51 AQMDQPNEAITLFRRMQVE-------NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY------GL-NTIVPLNNAL 116 (372)
Q Consensus 51 ~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 116 (372)
...|++++|+..|++..+. ..+....++..+..++...|++++|...++.+.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777666542 11123445666777777777777777777776643 11 1234556666
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC-----------CcchHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNK-----------SVITWTTMIAGLALHGLGREALDMFSRMERA------RVKP-NEIT 178 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~ 178 (372)
..+|...|++++|...|++..+. ...++..+...|...|++++|+..+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 67777777777777666654321 1234455555555555555555555555443 1111 1234
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
+..+...|...|++++|..+++++.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555555544
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=2.7e-11 Score=102.42 Aligned_cols=191 Identities=12% Similarity=-0.035 Sum_probs=88.1
Q ss_pred HHccCChHHHHHHHHHHHHc----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----C----cchHHHHHHH
Q 017414 85 CAQLGAVELGEWIHNYIEQY----GLNTI-VPLNNALIDMYAKSGKIGKALQVFENMKNK-----S----VITWTTMIAG 150 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~ 150 (372)
+...|++++|...+.+..+. |-++. ..+|+.+..+|.+.|++++|+..|++..+- + ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555444432 11111 234445555555555555555555444321 1 1245555555
Q ss_pred HHhc-CChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH-----HHHHHHH
Q 017414 151 LALH-GLGREALDMFSRMERARVK-PN----EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-----EQYGCMI 219 (372)
Q Consensus 151 ~~~~-~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li 219 (372)
|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|...|+++.+...-.+.. ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6554 6666666666655542100 00 2345555566666666666666666665321111111 1345555
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCCCHH------HHHHHHHHHH--HcCChhHHHHHHHHHHHhCC
Q 017414 220 DLLGRAGYLQEAEKLLRRM-PFEANAA------IWGSLLAASN--IYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~-~~~~~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p 275 (372)
.++...|++++|...|++. .+.|+.. .+..++.++. ..+++++|...|+.+..++|
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 5666666666666666665 3333221 1223333332 23445555555555544444
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=6.7e-10 Score=92.58 Aligned_cols=241 Identities=10% Similarity=-0.002 Sum_probs=169.5
Q ss_pred HHHHhcCCHHHHHHHHhccCCCC-hhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 017414 17 AGYAKVGDLNNARALFELMTEKN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGE 95 (372)
Q Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 95 (372)
.-..-.|++..++.-...+...+ ...-.-+.+++...|++... ..-.|....+..+.. |...+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HH
Confidence 33445789999888666665422 23334455888888888752 122445444433333 33322 66
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 96 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----SVITWTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
..+++..+.+ +++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777777665 455556668889999999999999999987543 4467888899999999999999999999876
Q ss_pred CCCC-----CHHHHHHHHHHhc----ccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 017414 171 RVKP-----NEITFIAILSACC----HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 240 (372)
Q Consensus 171 ~~~p-----~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~ 240 (372)
.| +..+...++.++. ..++...|..+|+++.++ .|+..+-..+..++.+.|++++|.+.++.+ ..
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56 3555666665532 234899999999999854 455333344445889999999999999865 21
Q ss_pred ----------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc
Q 017414 241 ----------EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 279 (372)
Q Consensus 241 ----------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 279 (372)
.| ++.+...+|......|+ +|.++++++.+..|+++.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 24 55666577776777786 889999999999998873
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=1.6e-10 Score=97.67 Aligned_cols=206 Identities=14% Similarity=0.031 Sum_probs=153.6
Q ss_pred CHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 017414 24 DLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKPD-EIAMLAALSACAQLGAVELGEWIH 98 (372)
Q Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 98 (372)
++++|...|+. .+..|...|++++|++.|.+..+. |-+++ ..+|+.+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46777766655 466788899999999999988653 32222 467889999999999999999999
Q ss_pred HHHHHcCC---CC--chhHHHHHHHHHHhc-CCHHHHHHHHHhcccC-----C----cchHHHHHHHHHhcCChhHHHHH
Q 017414 99 NYIEQYGL---NT--IVPLNNALIDMYAKS-GKIGKALQVFENMKNK-----S----VITWTTMIAGLALHGLGREALDM 163 (372)
Q Consensus 99 ~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~ 163 (372)
++..+... .+ ...+++.+..+|... |++++|+..|++..+. + ..++..+...+.+.|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 98876421 11 145788899999996 9999999999987641 1 34688899999999999999999
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH------HHHHHHHHHHH--hcCCHH
Q 017414 164 FSRMERARVKPNE------ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI------EQYGCMIDLLG--RAGYLQ 229 (372)
Q Consensus 164 ~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~--~~g~~~ 229 (372)
|++..+....... ..+..+..++...|++++|...|++.. .+.|+. ..+..++.++. ..++++
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999986433222 156677788889999999999999998 334432 13444566664 467899
Q ss_pred HHHHHHhhC-CCCCC
Q 017414 230 EAEKLLRRM-PFEAN 243 (372)
Q Consensus 230 ~a~~~~~~~-~~~~~ 243 (372)
+|+..|+++ ...|.
T Consensus 258 ~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHTTSSCCCHH
T ss_pred HHHHHhccCCccHHH
Confidence 999999887 54443
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.30 E-value=4.5e-10 Score=93.62 Aligned_cols=239 Identities=7% Similarity=-0.015 Sum_probs=169.5
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIG 127 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 127 (372)
+-..-.|++..++.-..++.. ........-+.+++...|+++.. ..-.|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 344567889888874433321 22223333456788888877642 112333334443333 34433
Q ss_pred HHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 128 KALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVK-PNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 128 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
|+..|++... ++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7788887663 44556678888999999999999999998776532 355677788899999999999999999998
Q ss_pred HhcCCCc-----CHHHHHHHHHH--HHhcC--CHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 204 SRYGIEP-----KIEQYGCMIDL--LGRAG--YLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 204 ~~~~~~~-----~~~~~~~li~~--~~~~g--~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
+. .| +..+...|+.+ ....| ++.+|..+|+++ ...|+..+...++.++...|++++|+..++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 53 56 35555666655 33334 899999999999 44566444445555889999999999999988775
Q ss_pred ----------CCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 274 ----------EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 274 ----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
+|.++.+...++.+....|+ +|.+++++++...
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48899899888888888887 8899999997753
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=6.7e-11 Score=98.90 Aligned_cols=150 Identities=12% Similarity=0.055 Sum_probs=104.7
Q ss_pred HhcCCHHHHHHHHhccCC-------C----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhC------CCCC-CHHHHHHH
Q 017414 20 AKVGDLNNARALFELMTE-------K----NVISWTTLIAGYAQMDQPNEAITLFRRMQVE------NVKP-DEIAMLAA 81 (372)
Q Consensus 20 ~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~l 81 (372)
...|++++|+..|++..+ + ...++..+...+...|++++|+..|+++.+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666655442 2 2456778888888888888888888887653 2123 34567777
Q ss_pred HHHHHccCChHHHHHHHHHHHHc------C-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------C---cch
Q 017414 82 LSACAQLGAVELGEWIHNYIEQY------G-LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--------S---VIT 143 (372)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---~~~ 143 (372)
..++...|++++|...++++.+. . .+....++..+...|...|++++|...|++..+. + ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888888888888877754 1 1223566777888888888888888888776532 2 346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
+..+...|...|++++|...+++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888888888888888887765
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=4.7e-10 Score=93.02 Aligned_cols=207 Identities=8% Similarity=-0.010 Sum_probs=142.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-HHHH
Q 017414 108 TIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-S---VITWTTMIAGLALHGLGREALDMFSRMERARV-KPN-EITF 179 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-~~~~ 179 (372)
.+...+..+...+.+.|++++|...|+++.+ | + ..++..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3456666778888888888888888888764 2 2 35677788888888888888888888887532 122 3455
Q ss_pred HHHHHHhcc--------cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 017414 180 IAILSACCH--------VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 251 (372)
Q Consensus 180 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~ 251 (372)
..+..++.. .|++++|...|+++.+.. +.+......+.......+.. ...+..+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 666667777 888888888888887542 22222222221111111111 11256677
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCc---chHHHHHHHHHHc----------CCchhHHHHHHHHHhCCCccCCceeEE
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAIL----------GRWNESGKIRKVMRDMGVKKMPGCSYI 318 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~~ 318 (372)
..+...|++++|+..++++.+..|.++ ..+..++.+|... |++++|...++++.....
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 889999999999999999999998744 4788888999876 889999999998865421
Q ss_pred EeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 017414 319 EVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 354 (372)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 354 (372)
.++...++...+.++.+.+++.
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHh
Confidence 2455667777777777666543
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=1.7e-10 Score=95.71 Aligned_cols=203 Identities=11% Similarity=0.030 Sum_probs=146.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C---cc
Q 017414 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI---VPLNNALIDMYAKSGKIGKALQVFENMKN--K-S---VI 142 (372)
Q Consensus 72 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~ 142 (372)
+.+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+ | + ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456777888899999999999999999999874 333 66788899999999999999999999875 3 2 24
Q ss_pred hHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHH
Q 017414 143 TWTTMIAGLAL--------HGLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE 213 (372)
Q Consensus 143 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 213 (372)
++..+..++.. .|++++|+..|+++.+.. |+. ..... ...+..+... ...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a--------------~~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDA--------------TQKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHH--------------HHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHH--------------HHHHHHHHHH-----HHH
Confidence 67788888988 999999999999998863 332 11111 1111111111 112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHc----------CChhHHHHHHHHHHHhCCCCc
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIY----------GDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~ 278 (372)
.+..+...|...|++++|...|+++ ...|+ ...+..+..++... |++++|...++++.+..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 2556788888999999999999887 22333 44667777777766 888999999999999999876
Q ss_pred c---hHHHHHHHHHHcCCchh
Q 017414 279 G---NYAILSNIYAILGRWNE 296 (372)
Q Consensus 279 ~---~~~~l~~~~~~~g~~~~ 296 (372)
. +...+...+...+++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 3 33344444444444433
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=8.8e-10 Score=89.23 Aligned_cols=184 Identities=12% Similarity=-0.001 Sum_probs=123.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCc----chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CH-HHHHH
Q 017414 110 VPLNNALIDMYAKSGKIGKALQVFENMKN--KSV----ITWTTMIAGLALHGLGREALDMFSRMERARVKP-NE-ITFIA 181 (372)
Q Consensus 110 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~-~~~~~ 181 (372)
...+..++..+.+.|++++|...|+++.+ |+. .++..+..+|.+.|++++|+..|+++.+..... .. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455677888888999999999998764 322 467778888899999999999999988763221 11 23444
Q ss_pred HHHHhcc------------------cCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC
Q 017414 182 ILSACCH------------------VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEAN 243 (372)
Q Consensus 182 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 243 (372)
+..++.. .|++++|...|+++.+. .+-+...+........ .. ..+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----~~------~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----LK------DRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----HH------HHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----HH------HHH-----
Confidence 4444433 45667777777776642 1222222221111000 00 000
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc---chHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 244 AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
......+...+...|++++|...++++++..|.++ .++..++.++.+.|++++|.+.++.+...+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456678899999999999999999999875 56889999999999999999999998876554
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=1.9e-11 Score=92.25 Aligned_cols=142 Identities=9% Similarity=-0.023 Sum_probs=101.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC
Q 017414 148 IAGLALHGLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 226 (372)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 226 (372)
...+...|++++|+..++..... .|+ ...+..+...|.+.|++++|...|+++.+. -+-+...|..+..+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34445566777777777765543 232 334556777788888888888888887743 2345677888888888888
Q ss_pred CHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHH-HHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 227 YLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGEC-ALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 227 ~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
++++|...|++. .+.| +...+..+...+...|+++++.. +++++.+++|.++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888876 4445 56678888888888888876554 4688888999888888888888777764
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.21 E-value=5.9e-10 Score=81.76 Aligned_cols=123 Identities=17% Similarity=0.179 Sum_probs=60.4
Q ss_pred HHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCC
Q 017414 182 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGD 259 (372)
Q Consensus 182 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~ 259 (372)
+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...++++ .. ..+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444421 1223334444444444444444444444444 11 1233444455555555555
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 260 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 260 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+++|...++++.+..|.++.++..++.++...|++++|.+.++++..
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55566666555555555555555566666666666666666555543
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=1e-09 Score=80.41 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 222 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 222 (372)
+|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45666777777777777777777776653 235566666777777778888888888777743 234566677777788
Q ss_pred HhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 223 GRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
...|++++|.+.++++ .. ..+...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888776 22 235667777777888888888888888888877764
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.18 E-value=9.6e-10 Score=92.53 Aligned_cols=176 Identities=10% Similarity=-0.017 Sum_probs=137.4
Q ss_pred HHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 126 IGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
.+.....+......+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3445555555555556677788888899999999999999988864 335677888888999999999999999998743
Q ss_pred cCCCcCHHHHHH-HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC--cch
Q 017414 206 YGIEPKIEQYGC-MIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN--SGN 280 (372)
Q Consensus 206 ~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~ 280 (372)
.|+...... ....+...++.++|...+++. ...| +...+..+...+...|++++|...++++.+.+|.+ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455443332 233466777788888888776 3344 67788889999999999999999999999999987 778
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 281 YAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
+..++..+...|+.++|...+++-.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887653
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.17 E-value=1.3e-09 Score=102.97 Aligned_cols=166 Identities=11% Similarity=-0.034 Sum_probs=83.8
Q ss_pred HccCChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhc
Q 017414 86 AQLGAVELGEWIHNYIE--------QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALH 154 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 154 (372)
...|++++|.+.++++. +.. +.+...+..+...|...|++++|...|++..+ .+..+|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555555555555554 221 33344455555555555555555555555442 2334555555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 017414 155 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKL 234 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 234 (372)
|++++|++.|++..+.. +-+...+..+..++.+.|++++ ...|+++.+. -+.+...|..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555542 1133444555555555555555 5555555532 122345555555555556666666655
Q ss_pred HhhC-CCCCC-HHHHHHHHHHHHH
Q 017414 235 LRRM-PFEAN-AAIWGSLLAASNI 256 (372)
Q Consensus 235 ~~~~-~~~~~-~~~~~~l~~~~~~ 256 (372)
|++. ...|+ ...+..+..++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHhhcccCcccHHHHHHHHHHHHc
Confidence 5555 34443 2334444444433
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=1.1e-09 Score=87.45 Aligned_cols=127 Identities=11% Similarity=-0.014 Sum_probs=51.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc-
Q 017414 116 LIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL- 191 (372)
Q Consensus 116 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~- 191 (372)
+..+|.+.|++++|+..|++..+ .+..+|..+..++...|++++|+..|++..+.. +.+..++..+..+|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence 44444444555555444444432 123344444445555555555555555544432 1223344444444333322
Q ss_pred -hHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH
Q 017414 192 -VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAI 246 (372)
Q Consensus 192 -~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~ 246 (372)
.+.+...++... ...|....+.....++...|++++|...|++. ...|+...
T Consensus 139 ~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 139 EKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 222333333332 11121222223333444445555555555544 44444433
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=1.4e-09 Score=86.92 Aligned_cols=158 Identities=10% Similarity=0.011 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhhHHH----------------HHHHHHhCCCccHHHHHHHHHHhCC
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTEK---NVISWTT----------------LIAGYAQMDQPNEAITLFRRMQVEN 70 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~m~~~~ 70 (372)
..+-.....+.+.|++++|+..|+...+. +...|.. +..++.+.|++++|+..|++..+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34444555666777777777777766542 2233444 5555555555555555555555532
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--HHHHHHHHHhcccCCcc--hHHH
Q 017414 71 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK--IGKALQVFENMKNKSVI--TWTT 146 (372)
Q Consensus 71 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~ 146 (372)
+-+...+..+..++...|++++|...|+++.+.. |.+...+..+..+|...|+ ...+...++....++.. .+..
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 162 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 2244455555555555555555555555555543 3344455555555443332 23334444444433322 2222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 017414 147 MIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
...++...|++++|+..|++..+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33334444555555555555444
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=1e-09 Score=85.18 Aligned_cols=157 Identities=14% Similarity=0.020 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA-C 85 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~ 85 (372)
..+......+.+.|++++|+..|++..+ .+...+..+...+...|++++|+..|++..+.. |+...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 4456678889999999999999999886 356789999999999999999999999887653 454433322222 1
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-----cchHHHHHHHHHhcCChhHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS-----VITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a 160 (372)
...+....+...++...+.. |.+...+..+..++...|++++|...|+++.+.+ ...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233345677888888764 4567788888888888999999998888876432 34788888888888888888
Q ss_pred HHHHHHHHH
Q 017414 161 LDMFSRMER 169 (372)
Q Consensus 161 ~~~~~~~~~ 169 (372)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877653
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.16 E-value=2e-09 Score=101.74 Aligned_cols=169 Identities=11% Similarity=-0.053 Sum_probs=125.7
Q ss_pred HhcCCHHHHHHHHHhcc-----------cCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 017414 121 AKSGKIGKALQVFENMK-----------NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189 (372)
Q Consensus 121 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 189 (372)
...|++++|++.|++.. ..+...+..+..++...|++++|++.|++..+.+ +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66788888888888766 2345677788888888888888888888887763 33566777777788888
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECAL 267 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (372)
|++++|...|+++.+. -+.+...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888743 13356777788888888888888 8888776 3334 5667778888888888888888888
Q ss_pred HHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 268 QHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 268 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
+++.+++|.+..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888877788888777765444
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=8.3e-09 Score=82.59 Aligned_cols=173 Identities=8% Similarity=-0.136 Sum_probs=117.6
Q ss_pred HHHHHHhccc-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC----chHHHHHHHHHhH
Q 017414 129 ALQVFENMKN-KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG----LVELGRRYFNIMK 203 (372)
Q Consensus 129 A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 203 (372)
|.+.|++..+ .++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444332 345566666666666777777777777776654 44556666666666 5 7778888887776
Q ss_pred HhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHH----cCChhHHHHHHHHHH
Q 017414 204 SRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRM-PFEAN---AAIWGSLLAASNI----YGDVELGECALQHLI 271 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 271 (372)
+. -++..+..|...|.. .+++++|...|++. ...|+ ...+..|...|.. .+++++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 42 255666677777766 67788888888776 33343 6677777777777 678888888888888
Q ss_pred HhCCCCcchHHHHHHHHHHc-C-----CchhHHHHHHHHHhCCCc
Q 017414 272 KLEPHNSGNYAILSNIYAIL-G-----RWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 272 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~~ 310 (372)
+. |.++..+..|+.+|... | ++++|...|++..+.|..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 77 44666778888887654 3 788888888887766643
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.15 E-value=1.1e-09 Score=93.12 Aligned_cols=179 Identities=12% Similarity=-0.002 Sum_probs=113.8
Q ss_pred HHHHhcCCHHHHHHHHHhcccC-----C----cchHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCC--HHHHHHHH
Q 017414 118 DMYAKSGKIGKALQVFENMKNK-----S----VITWTTMIAGLALHGLGREALDMFSRMERAR---VKPN--EITFIAIL 183 (372)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~ 183 (372)
..|...|++++|...|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455556666666665554321 1 2356667777777777777777777765431 0111 34666777
Q ss_pred HHhcccCchHHHHHHHHHhHHhcC---CCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC---CCC----HHHHHHHH
Q 017414 184 SACCHVGLVELGRRYFNIMKSRYG---IEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF---EAN----AAIWGSLL 251 (372)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~---~~~----~~~~~~l~ 251 (372)
..|.. |++++|...|++..+-.. ..+ ...++..+...|...|++++|+..|++. .+ .++ ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77877 888888888888774311 000 1456777888888999999998888876 11 111 22555666
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCCcch-----HHHHHHHHHHcCCchhHHH
Q 017414 252 AASNIYGDVELGECALQHLIKLEPHNSGN-----YAILSNIYAILGRWNESGK 299 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 299 (372)
.++...|++++|...++++. ..|..... ...++.++ ..|+.+.+.+
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 67777899999999999998 87754432 33444444 5666665555
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.13 E-value=4.1e-10 Score=84.91 Aligned_cols=122 Identities=10% Similarity=-0.067 Sum_probs=102.0
Q ss_pred HHHHhcccCchHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC
Q 017414 182 ILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG 258 (372)
Q Consensus 182 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~ 258 (372)
|...+...|++++|...+..... ..| +...+..+...|.+.|++++|.+.|++. .+.| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45667788999999999998873 344 3456677899999999999999999998 4455 6788999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHH-HHHHHh
Q 017414 259 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI-RKVMRD 306 (372)
Q Consensus 259 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 306 (372)
++++|+..++++.+++|.++.++..++.+|.+.|++++|.+. +++...
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466544
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.11 E-value=8.2e-10 Score=85.68 Aligned_cols=75 Identities=17% Similarity=0.070 Sum_probs=47.0
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC--cchHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 231 AEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN--SGNYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 231 a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
|...+++. ...| +...+..+..++...|++++|...++++.+.+|.. +..+..++.++...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 34444443 2233 45566666666777777777777777777766643 4466777777777777777777666543
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=2e-09 Score=99.86 Aligned_cols=160 Identities=9% Similarity=-0.012 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHH
Q 017414 123 SGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 199 (372)
Q Consensus 123 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 199 (372)
.|++++|.+.|++..+ .+...|..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998875 345789999999999999999999999998864 345778888999999999999999999
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc---CChhHHHHHHHHHHHhC
Q 017414 200 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY---GDVELGECALQHLIKLE 274 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 274 (372)
+++.+. .+.+...+..+..+|...|++++|.+.|++. ...| +...+..+..++... |+.++|.+.++++.+.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999864 2446788999999999999999999999997 3344 577888899999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 017414 275 PHNSGNYAILS 285 (372)
Q Consensus 275 p~~~~~~~~l~ 285 (372)
|.+...+..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98888887765
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.09 E-value=5.2e-09 Score=83.65 Aligned_cols=129 Identities=15% Similarity=-0.053 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
+...+..+...+...|++++|+..|++...++...|..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 344566677778888888888888888877777788888888888888888888888887753 3456677777788888
Q ss_pred cCChHHHHHHHHHHHHcCCCCch----------------hHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIV----------------PLNNALIDMYAKSGKIGKALQVFENMKN 138 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 138 (372)
.|++++|...++.+.+.. +.+. ..+..+..+|...|++++|...|++..+
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 888888888888877753 2222 4444555555555555555555555443
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=2e-07 Score=78.40 Aligned_cols=229 Identities=8% Similarity=0.002 Sum_probs=169.0
Q ss_pred hCCC-ccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc-
Q 017414 52 QMDQ-PNEAITLFRRMQVENVKPDEIAMLAALSACAQLG--AVELGEWIHNYIEQYGLNTIVPLNNALIDMY----AKS- 123 (372)
Q Consensus 52 ~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 123 (372)
+.|. .++|++++.+++..+ +-+...|+.--.++...+ +++++...++.+.... +.+..+|+.-..++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 4444 468999999998853 234556787777888888 8999999999999875 55667776655555 555
Q ss_pred --CCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc-----
Q 017414 124 --GKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGR--EALDMFSRMERARVKPNEITFIAILSACCHVGL----- 191 (372)
Q Consensus 124 --g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----- 191 (372)
+++++++.+++++.+ .+..+|+.-..++.+.|.++ ++++.++++.+.+. -|...|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 788999999988875 35567777778888888888 99999999988754 366677665555556665
Q ss_pred -hHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHH-HHHHHHhhC-CC----CCCHHHHHHHHHHHHHcCChhHHH
Q 017414 192 -VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ-EAEKLLRRM-PF----EANAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 192 -~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
++++.+.++.+... -+-|...|+.+...+.+.|+.. .+..+..++ .. ..++..+..+...+.+.|+.++|.
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 78888888888853 3557788888888887777744 355566665 22 236777888888888889999999
Q ss_pred HHHHHHHH-hCCCCcchHHHHH
Q 017414 265 CALQHLIK-LEPHNSGNYAILS 285 (372)
Q Consensus 265 ~~~~~~~~-~~p~~~~~~~~l~ 285 (372)
++++.+.+ .+|.....|...+
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHH
Confidence 99999886 7887766666544
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=5.6e-09 Score=84.46 Aligned_cols=185 Identities=11% Similarity=-0.061 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCc-c---hHH
Q 017414 74 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNT--IVPLNNALIDMYAKSGKIGKALQVFENMKN--KSV-I---TWT 145 (372)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~ 145 (372)
+...+..+...+.+.|++++|...|+.+.+..... ....+..++.+|.+.|++++|+..|+++.+ |+. . ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566677888999999999999999999864211 135677889999999999999999999874 332 2 455
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcccCchHHHHHHHHHhHHhc
Q 017414 146 TMIAGLAL------------------HGLGREALDMFSRMERARVKPNEI-TFIAILSACCHVGLVELGRRYFNIMKSRY 206 (372)
Q Consensus 146 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 206 (372)
.+..++.. .|++++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 56666654 57899999999999886 34432 2211110 001111111
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcc
Q 017414 207 GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 279 (372)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 279 (372)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|...++.+....|.+..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678888999999999999987 33343 246778888999999999999999999888887543
No 109
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.08 E-value=1.3e-07 Score=88.47 Aligned_cols=134 Identities=4% Similarity=0.055 Sum_probs=91.4
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCC---ccHHHHHHHHHHhCC-CCCCHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQ---PNEAITLFRRMQVEN-VKPDEI 76 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~m~~~~-~~p~~~ 76 (372)
-.|.|..+|..++..+.+.+.++.+..+|+++.. | ....|..-+..-.+.++ ++.+.++|++.+... .+|+..
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 3567899999999999999999999999999886 3 45677777887888888 999999999998753 137888
Q ss_pred HHHHHHHHHHccCCh--------HHHHHHHHHHHH-cCC-CC-chhHHHHHHHHHHh---------cCCHHHHHHHHHhc
Q 017414 77 AMLAALSACAQLGAV--------ELGEWIHNYIEQ-YGL-NT-IVPLNNALIDMYAK---------SGKIGKALQVFENM 136 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~ 136 (372)
.|..-+....+.++. +.+.++|+.++. .|. .+ +...|...+..... .++++.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 887777655554443 334467776654 355 44 34566666654332 23345555555554
Q ss_pred c
Q 017414 137 K 137 (372)
Q Consensus 137 ~ 137 (372)
.
T Consensus 221 L 221 (679)
T 4e6h_A 221 L 221 (679)
T ss_dssp T
T ss_pred H
Confidence 4
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.08 E-value=8.1e-09 Score=86.85 Aligned_cols=160 Identities=8% Similarity=-0.065 Sum_probs=83.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 017414 108 TIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFI-AIL 183 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~ 183 (372)
.+...+..+...+...|++++|...|++..+ .+..++..+...+.+.|++++|...++++... .|+..... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 3344444555555556666666666555442 23345555555566666666666666555443 23322211 112
Q ss_pred HHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHHcCC
Q 017414 184 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN---AAIWGSLLAASNIYGD 259 (372)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~ 259 (372)
..+...++.+.|...+++.... -+.+...+..+...|...|++++|...|+++ ...|+ ...+..+...+...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2234445555556666555532 2334555566666666666666666666655 22232 4456666666666666
Q ss_pred hhHHHHHHHHHH
Q 017414 260 VELGECALQHLI 271 (372)
Q Consensus 260 ~~~a~~~~~~~~ 271 (372)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 666666665554
No 111
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.06 E-value=2.1e-08 Score=93.70 Aligned_cols=216 Identities=9% Similarity=0.007 Sum_probs=167.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 017414 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGE-WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENM 136 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 136 (372)
++..+|++.+.. .+-....|...+..+.+.|+.++|. .+++..... .|.+...|..++....+.|++++|.++|+++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345667777664 3456777888888888889999996 999999875 3667777888999999999999999999987
Q ss_pred cc-------------CC------------cchHHHHHHHHHhcCChhHHHHHHHHHHHc-C-CCCCHHHHHHHHHHhccc
Q 017414 137 KN-------------KS------------VITWTTMIAGLALHGLGREALDMFSRMERA-R-VKPNEITFIAILSACCHV 189 (372)
Q Consensus 137 ~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~p~~~~~~~l~~~~~~~ 189 (372)
.+ |+ ..+|...+....+.|..+.|.++|.+..+. + ..+......+.+...+ .
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-S 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-T
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-C
Confidence 64 21 236788888888899999999999999876 2 2222333333333222 3
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC----CHHHHHHHHHHHHHcCChhHHH
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA----NAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
++.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 56999999999999753 446667778888888899999999999997 3334 3467888888889999999999
Q ss_pred HHHHHHHHhCCCCc
Q 017414 265 CALQHLIKLEPHNS 278 (372)
Q Consensus 265 ~~~~~~~~~~p~~~ 278 (372)
.+.+++.+..|+++
T Consensus 562 ~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 562 TLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHSTTCC
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999999775
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=4.6e-09 Score=97.36 Aligned_cols=147 Identities=8% Similarity=-0.129 Sum_probs=111.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHH
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMF 164 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 164 (372)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+. +..+|..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 456788899999999999999999999987653 4568899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHhhC
Q 017414 165 SRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA---GYLQEAEKLLRRM 238 (372)
Q Consensus 165 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~ 238 (372)
++..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..+..++... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998874 345778888999999999999999999999853 244678888999999999 9999999999887
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.05 E-value=8.3e-08 Score=80.70 Aligned_cols=214 Identities=13% Similarity=0.062 Sum_probs=170.8
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhccc---CCcchHHHHHHHH----Hhc---CC
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG--KIGKALQVFENMKN---KSVITWTTMIAGL----ALH---GL 156 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 156 (372)
...++|....+.++..+ |-+..+|+.-..++...| ++++++++++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34578999999999876 556788888888898988 99999999998875 3456777665555 555 78
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchH--HHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC------H
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVE--LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY------L 228 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~ 228 (372)
+++++++++++.+.. +-+..+++.-.-.+.+.|.++ ++.++++++.+. -+-+...|+.-...+...|+ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999999875 346777776666667778887 999999999964 24577788777777777776 8
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHhC---CCCcchHHHHHHHHHHcCCchhHHHHHH
Q 017414 229 QEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV-ELGECALQHLIKLE---PHNSGNYAILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 229 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (372)
+++++.++++ ...| |...|+.+...+...|+. +.+..++.++.+++ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8999998877 3344 788898888888888875 44666777777665 7788899999999999999999999999
Q ss_pred HHHh
Q 017414 303 VMRD 306 (372)
Q Consensus 303 ~m~~ 306 (372)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=1.7e-08 Score=80.75 Aligned_cols=169 Identities=8% Similarity=-0.034 Sum_probs=105.7
Q ss_pred HHHHHhccCC-CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHH
Q 017414 28 ARALFELMTE-KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG----AVELGEWIHNYIE 102 (372)
Q Consensus 28 A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 102 (372)
|.+.|++..+ .++.++..|...|...+++++|++.|++..+.| +...+..+...+.. + +.++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444433 456667777777777777777777777776654 44555566666665 5 6777777777776
Q ss_pred HcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcccCC-----cchHHHHHHHHHh----cCChhHHHHHHHHHHH
Q 017414 103 QYGLNTIVPLNNALIDMYAK----SGKIGKALQVFENMKNKS-----VITWTTMIAGLAL----HGLGREALDMFSRMER 169 (372)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 169 (372)
+.| +...+..|...|.. .+++++|..+|++..+.+ +.++..|...|.. .+++++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 644 34455566666665 667777777777666543 3566677777766 6677777777777766
Q ss_pred cCCCCCHHHHHHHHHHhccc-C-----chHHHHHHHHHhHHh
Q 017414 170 ARVKPNEITFIAILSACCHV-G-----LVELGRRYFNIMKSR 205 (372)
Q Consensus 170 ~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~ 205 (372)
.+ .+...+..|...|... | +.++|..+|+...+.
T Consensus 158 ~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 158 LS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp TS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred cC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 51 2223444455555432 2 677777777777643
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.04 E-value=2.5e-09 Score=90.94 Aligned_cols=197 Identities=11% Similarity=-0.022 Sum_probs=147.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 017414 87 QLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSR 166 (372)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 166 (372)
..|++++|.+++++..+.. +.. .+...++++.|...|++. ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 3567788888888777642 111 011157899999888764 5678899999999999998
Q ss_pred HHHc----CCCC-CHHHHHHHHHHhcccCchHHHHHHHHHhHHhc---CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 017414 167 MERA----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRY---GIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRR 237 (372)
Q Consensus 167 ~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 237 (372)
..+. +-.+ ...+|..+...|...|++++|...|++..+-+ +-.. ...++..+..+|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7753 1111 13578888889999999999999999877432 1111 13577888889988 999999999988
Q ss_pred C-CCCC-------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc------chHHHHHHHHHHcCCchhHHHHHHH
Q 017414 238 M-PFEA-------NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS------GNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 238 ~-~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
. .+.| ...++..+...+...|++++|+..++++.++.|.+. ..+..++.++...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 1111 145788888999999999999999999998665432 3667778888889999999999998
Q ss_pred HH
Q 017414 304 MR 305 (372)
Q Consensus 304 m~ 305 (372)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.01 E-value=2.6e-09 Score=80.29 Aligned_cols=98 Identities=11% Similarity=0.002 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++.+++|.++.+|..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3466777888888999999999999887 4445 6778888888999999999999999999999999999999999999
Q ss_pred HHcCCchhHHHHHHHHHhCC
Q 017414 289 AILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~g 308 (372)
...|++++|...|++.....
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999998886643
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.99 E-value=3.4e-08 Score=83.30 Aligned_cols=163 Identities=9% Similarity=-0.023 Sum_probs=114.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhcccCchHHHHHHHHHhHHhcC--CCcC--HH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNE-----ITFIAILSACCHVGLVELGRRYFNIMKSRYG--IEPK--IE 213 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~ 213 (372)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888777665322111 2233455666778889999988888774211 1111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-------CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC------Cc
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM-------PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH------NS 278 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~-------~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 278 (372)
+++.+...|...|++++|...|++. +..+ ...++..+...|...|++++|...++++.++.+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888889999999988888775 2111 1257788888999999999999999998875421 14
Q ss_pred chHHHHHHHHHHcCCchhH-HHHHHHHH
Q 017414 279 GNYAILSNIYAILGRWNES-GKIRKVMR 305 (372)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 305 (372)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788899999999999999 77677653
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.99 E-value=1.4e-07 Score=79.55 Aligned_cols=159 Identities=9% Similarity=-0.015 Sum_probs=116.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC-CCCH----HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHH
Q 017414 147 MIAGLALHGLGREALDMFSRMERARV-KPNE----ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGC 217 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 217 (372)
.+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|...++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45677888888888888888776421 2221 13334666777888999999999988852111222 336888
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-----CC--C-C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC------CcchHH
Q 017414 218 MIDLLGRAGYLQEAEKLLRRM-----PF--E-A-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH------NSGNYA 282 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~-----~~--~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~ 282 (372)
+..+|...|++++|...|+++ .. . + ...++..+...|...|++++|...++++.++.+. -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888999999999998888876 11 1 1 1236778888999999999999999999885422 256889
Q ss_pred HHHHHHHHcCC-chhHHHHHHHHH
Q 017414 283 ILSNIYAILGR-WNESGKIRKVMR 305 (372)
Q Consensus 283 ~l~~~~~~~g~-~~~a~~~~~~m~ 305 (372)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999888764
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=9.7e-09 Score=74.69 Aligned_cols=109 Identities=12% Similarity=-0.027 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 254 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 254 (372)
..+......|.+.|++++|...|+++.+. -+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34555666777777777777777777642 2345667777777777777777777777776 3333 566677777777
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
...|++++|...|+++++++|.++.++..|..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 788888888888888888888777766666543
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.95 E-value=2.9e-08 Score=79.23 Aligned_cols=123 Identities=12% Similarity=-0.009 Sum_probs=79.7
Q ss_pred HHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHc
Q 017414 180 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIY 257 (372)
Q Consensus 180 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~ 257 (372)
..+...+...|++++|...|+++. .|+...+..+..+|...|++++|...|++. ... .+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 334445556666666666666553 345566666666666666666666666665 222 2455666666677777
Q ss_pred CChhHHHHHHHHHHHhCCCCc----------------chHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 258 GDVELGECALQHLIKLEPHNS----------------GNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
|++++|...++++.+..|.+. .++..++.++...|++++|.+.+++....
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777777777777777666555 67777777777777777777777776544
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.95 E-value=1.1e-08 Score=74.46 Aligned_cols=110 Identities=10% Similarity=-0.014 Sum_probs=65.1
Q ss_pred cCCccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA 80 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 80 (372)
++|.....+......|.+.|++++|+..|++..+ .+...|..+..++.+.|++++|+..|++.++.. +.+...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHH
Confidence 4445555666666666666666666666666543 245566666666666666666666666666542 234555666
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHH
Q 017414 81 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNA 115 (372)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 115 (372)
+..++...|++++|...|++..+.. |.+...+..
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~ 120 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD-PSNEEAREG 120 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 6666666666666666666666653 333444433
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.93 E-value=2.7e-08 Score=75.86 Aligned_cols=127 Identities=9% Similarity=-0.008 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 254 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 254 (372)
..+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|...+++. ...| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556667777788888888888887753 2345677788888888888888888888876 3233 567788888899
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH--HHHcCCchhHHHHHHHHH
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNI--YAILGRWNESGKIRKVMR 305 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 305 (372)
...|++++|...++++.+..|.++..+..+..+ +...|++++|.+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999888777554444 788899999999888764
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=7.6e-09 Score=77.63 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|...++++.+++|.++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4456677788888888888888888877 3334 6777888888888889999999999998888888888888888889
Q ss_pred HHcCCchhHHHHHHHHHhC
Q 017414 289 AILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (372)
...|++++|.+.|++....
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999998888877543
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=8.4e-08 Score=78.94 Aligned_cols=192 Identities=11% Similarity=-0.079 Sum_probs=120.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHH-------HHHHHhcCCHHHHHHHHHhcccC---------C----------
Q 017414 87 QLGAVELGEWIHNYIEQYGLNTIVPLNNAL-------IDMYAKSGKIGKALQVFENMKNK---------S---------- 140 (372)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~---------~---------- 140 (372)
..++...|.+.|.++.+.. |-....|..+ ...+.+.++..+++..+.+-..- +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566666666776666654 3345556555 34444444445554444443321 1
Q ss_pred -----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC--HH
Q 017414 141 -----VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK--IE 213 (372)
Q Consensus 141 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 213 (372)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 0123445666777888888888887776543 44434445555777888888888888755521 1 121 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC--C-CCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHH
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM--P-FEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL 284 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~--~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 284 (372)
.+..+..++...|++++|+..|++. + ..|. .........++...|+.++|...|+++...+|. +.++..|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 5667778888888888888888877 2 1143 335666667788888888888888888888886 5544444
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.90 E-value=4.1e-08 Score=71.32 Aligned_cols=118 Identities=10% Similarity=0.001 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH
Q 017414 176 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAA 253 (372)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~ 253 (372)
...+..+...+...|++++|...++++... .+.+...+..+..++...|++++|...+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 455666777777888888888888888753 2345677778888888888888888888876 2233 56778888888
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCch
Q 017414 254 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 295 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 295 (372)
+...|++++|...++++.+..|.++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988888999999998888763
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.90 E-value=6.3e-09 Score=87.21 Aligned_cols=95 Identities=8% Similarity=-0.108 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 017414 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 120 (372)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (372)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++.+.+.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555432 2244445555555555555555555555555442 33444555555555
Q ss_pred HhcCCHHHHHHHHHhcc
Q 017414 121 AKSGKIGKALQVFENMK 137 (372)
Q Consensus 121 ~~~g~~~~A~~~~~~~~ 137 (372)
...|++++|...|++..
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555443
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.89 E-value=1.2e-07 Score=79.82 Aligned_cols=162 Identities=9% Similarity=-0.083 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCC---c------chHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--H
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKNKS---V------ITWTTMIAGLALHGLGREALDMFSRMERARV---KPN--E 176 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~ 176 (372)
..+...+..+...|++++|.+.+++..+.. . ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344556777888888888888887654311 1 2234456667788899999999988875321 122 4
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHH---hcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-------C
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKS---RYGIEP--KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-------N 243 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-------~ 243 (372)
.+++.+...|...|++++|...++++.+ ..+..+ ...++..+...|...|++++|...+++. .+.+ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4778888889999999999999988873 211111 1257888888999999999999988876 1111 1
Q ss_pred HHHHHHHHHHHHHcCChhHH-HHHHHHHHH
Q 017414 244 AAIWGSLLAASNIYGDVELG-ECALQHLIK 272 (372)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 272 (372)
..+|..+...+...|++++| ...++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788888899999999999 777888776
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=3.3e-08 Score=83.41 Aligned_cols=194 Identities=10% Similarity=0.023 Sum_probs=138.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChh---hHHHHHHHHHhCCCccHHHHHHHHHHhCC-CCCCHH----H
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTEKNVI---SWTTLIAGYAQMDQPNEAITLFRRMQVEN-VKPDEI----A 77 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~----~ 77 (372)
.|+..+...+...+.-.- ..+|..-...+.. .+...+..+...|++++|...+++..+.. ..|+.. .
T Consensus 43 ~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~ 117 (293)
T 3u3w_A 43 YPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQW 117 (293)
T ss_dssp CCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHH
Confidence 477777777766665332 2344443333333 33344677889999999999999988742 123321 3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCC-c----hhHHHHHHHHHHhcCCHHHHHHHHHhccc------CC----cc
Q 017414 78 MLAALSACAQLGAVELGEWIHNYIEQYGLNT-I----VPLNNALIDMYAKSGKIGKALQVFENMKN------KS----VI 142 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~----~~ 142 (372)
+..+...+...+++++|...++.+.+..... + ..+++.+..+|...|++++|...|++..+ .+ ..
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 3356777778889999999999998743222 2 23688899999999999999999988762 11 24
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhcccCc-hHHHHHHHHHhHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERA----RVKPN-EITFIAILSACCHVGL-VELGRRYFNIMKS 204 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 204 (372)
+|..+...|.+.|++++|+..+++..+. +..+. ..++..+..++.+.|+ +++|...++++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7888999999999999999999987753 22222 5678888889999994 6999998888764
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.89 E-value=4.3e-08 Score=71.56 Aligned_cols=117 Identities=10% Similarity=-0.057 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 017414 175 NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLA 252 (372)
Q Consensus 175 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~ 252 (372)
+...+..+...+...|++++|...|+++.+ ..+.+...+..+..++...|++++|...+++. ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345666677777777777777777777773 22335667777777777888888888877776 2223 5667778888
Q ss_pred HHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
++...|++++|...++++.+..|.+...+..+..++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888999999999999888888888888888888877653
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.88 E-value=6e-08 Score=69.74 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHH
Q 017414 176 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAA 253 (372)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~ 253 (372)
...+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++ .. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 455666777777788888888888887753 2345667777788888888888888888776 22 2356777888888
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC
Q 017414 254 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 292 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 292 (372)
+...|++++|...++++.+..|.++..+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888899999999999998888888888888777776543
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.85 E-value=7.4e-08 Score=69.26 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 9 YKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
..+|..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|+..|+++.+.. +.+..++..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 55666666677777777777777766543 244566666666666777777777776666542 33555666666666
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 121 (372)
...|++++|...++.+.+.. +.+...+..+..++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 66666666666666666553 334444444444443
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.84 E-value=2.9e-08 Score=78.45 Aligned_cols=148 Identities=14% Similarity=-0.008 Sum_probs=77.6
Q ss_pred HhcCCHHHHHH---HHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCh
Q 017414 20 AKVGDLNNARA---LFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKP-DEIAMLAALSACAQLGAV 91 (372)
Q Consensus 20 ~~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~ 91 (372)
...|++++|.+ .+..-+.....++..+...+...|++++|+..+++..+. +..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35677777777 443322234456777777777777777777777766551 1111 233455566666667777
Q ss_pred HHHHHHHHHHHHc----CCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCc----chHHHHHHHHHhcCC
Q 017414 92 ELGEWIHNYIEQY----GLNT--IVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSV----ITWTTMIAGLALHGL 156 (372)
Q Consensus 92 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~ 156 (372)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+ .+. .++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777666665543 1011 123345555666666666666666554431 111 123444444555555
Q ss_pred hhHHHHHHHHH
Q 017414 157 GREALDMFSRM 167 (372)
Q Consensus 157 ~~~a~~~~~~~ 167 (372)
+++|.+.+++.
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=7.5e-08 Score=70.23 Aligned_cols=98 Identities=9% Similarity=-0.068 Sum_probs=48.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAAL 82 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 82 (372)
+.+...|..+...+.+.|++++|...|++..+ .+...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 33444455555555555555555555554433 133444555555555555555555555554432 22344444444
Q ss_pred HHHHccCChHHHHHHHHHHHHc
Q 017414 83 SACAQLGAVELGEWIHNYIEQY 104 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~ 104 (372)
.++...|++++|...+++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 5555555555555555554443
No 134
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=3.1e-06 Score=76.61 Aligned_cols=322 Identities=9% Similarity=-0.043 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHhCCC-ccHHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQ-PNEAITLFRRMQVE-NV-KPDEIAMLAALSA 84 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~-~~-~p~~~~~~~l~~~ 84 (372)
.+|...+..+-. |+++.|..+|++... |+...|..-+....+.+. .+....+|+..+.. |. .++...|...+..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 356666666654 889999999988776 788888877776666553 45567777777653 43 2366777777765
Q ss_pred HHc----cCChHHHHHHHHHHHHcCCCCchhHHHHH--------------------------------------------
Q 017414 85 CAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNAL-------------------------------------------- 116 (372)
Q Consensus 85 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------------------------------------- 116 (372)
+.. .++.+.+..+|++++......-..+|...
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~ 174 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence 542 35677788888888763211111222111
Q ss_pred ----HHHHHhc--CC-----HHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 017414 117 ----IDMYAKS--GK-----IGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI 182 (372)
Q Consensus 117 ----~~~~~~~--g~-----~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 182 (372)
+..-... |- .+.+..+|++... .....|...+.-+.+.|+.++|..+|++.... +.+...+...
T Consensus 175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y 252 (493)
T 2uy1_A 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYY 252 (493)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHH
T ss_pred HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 1110000 00 1223344444432 23345555555666677777777777777665 2222222111
Q ss_pred HHHhcccCchHHHHHHHHHhHHhc---C-----C---CcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--CHHHHHH
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRY---G-----I---EPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA--NAAIWGS 249 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~---~-----~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~ 249 (372)
.. +.+.+ + +++.+.+.+ . . ......|...+....+.+..+.|..+|++. ..| +..+|..
T Consensus 253 ~~-~~e~~---~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~ 324 (493)
T 2uy1_A 253 GL-VMDEE---A---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIY 324 (493)
T ss_dssp HH-HTTCT---H---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHH
T ss_pred Hh-hcchh---H---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHH
Confidence 11 11111 1 122222110 0 0 001234555666666778899999999888 222 3444543
Q ss_pred HHHHHHHc-CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEE
Q 017414 250 LLAASNIY-GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFV 328 (372)
Q Consensus 250 l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~ 328 (372)
....-... ++.+.|..+|+.+.+..|.++..+...+......|+.+.|..+|+.... ...-+..|+
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~---------- 391 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMI---------- 391 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHH----------
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHH----------
Confidence 33333333 3699999999999998887777777778888888999999999887621 000111111
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHHcC
Q 017414 329 AGDTSHPDFDRLYQILCKINGQMKFAE 355 (372)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~m~~~g 355 (372)
.-...+|+.+.+..++++..+.++..+
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~~~~~~~ 418 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMDAIKADA 418 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhcccc
Confidence 112345677777777777777776444
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.82 E-value=3.3e-08 Score=76.46 Aligned_cols=119 Identities=8% Similarity=0.058 Sum_probs=82.1
Q ss_pred cccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH-HHHcCCh--h
Q 017414 187 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAA-SNIYGDV--E 261 (372)
Q Consensus 187 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~-~~~~~~~--~ 261 (372)
...|++++|...++...+. .+.+...+..+...|...|++++|...|++. ...| +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4566777777777777643 2345667777777777778888887777776 2223 55566666666 6677777 8
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 262 LGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 262 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+|...++++.+..|.++.++..++.++...|++++|...+++....
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888877777888888888888888888888777554
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=6.1e-06 Score=70.20 Aligned_cols=232 Identities=11% Similarity=-0.019 Sum_probs=158.8
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS-G- 124 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 124 (372)
....+.+..++|++++.+++... +-+..+|+.--.++...+ +++++...++.+.... +.+..+|+.-..++... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 33344556678999999998854 335566777777777778 5999999999999875 66778888777777776 7
Q ss_pred CHHHHHHHHHhcccCC---cchHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc--
Q 017414 125 KIGKALQVFENMKNKS---VITWTTMIAGLALHGLGR--------EALDMFSRMERARVKPNEITFIAILSACCHVGL-- 191 (372)
Q Consensus 125 ~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-- 191 (372)
++++++++++++.+.+ ..+|+.-..++.+.|.++ ++++.++++.+..+ -|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 8899999999888654 456666666666666666 89999999988753 367777777767766665
Q ss_pred -----hHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH--------------------HHHHHHHhhC-CC-----
Q 017414 192 -----VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL--------------------QEAEKLLRRM-PF----- 240 (372)
Q Consensus 192 -----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~-~~----- 240 (372)
++++.+.++++... .+-|...|+-+-..+.+.|+. .....+..++ +.
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 67888888887753 345667777766666665543 3344444444 21
Q ss_pred --CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-HhCCCCcchHHHH
Q 017414 241 --EANAAIWGSLLAASNIYGDVELGECALQHLI-KLEPHNSGNYAIL 284 (372)
Q Consensus 241 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l 284 (372)
.+++..+..++..|...|+.++|.++++.+. +.+|-....|...
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 2466667777777777777778888887776 3566554444433
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.82 E-value=7.2e-09 Score=86.87 Aligned_cols=50 Identities=10% Similarity=-0.113 Sum_probs=32.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHc-CCchhHHHHHHHHHh
Q 017414 257 YGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL-GRWNESGKIRKVMRD 306 (372)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 306 (372)
.|+.++|.+.++.+.+.+|.+......+...+.+. +.+++|.++|.+...
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 46777777777777777776655555555555554 566777777776643
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.81 E-value=3.7e-08 Score=84.77 Aligned_cols=94 Identities=15% Similarity=0.060 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
...|..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...|++++++.|.++.++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888999999999999999999887 3344 67788999999999999999999999999999999999999999999
Q ss_pred HcCCchhHH-HHHHHHH
Q 017414 290 ILGRWNESG-KIRKVMR 305 (372)
Q Consensus 290 ~~g~~~~a~-~~~~~m~ 305 (372)
..|++++|. ..++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999994 4666663
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=5.2e-08 Score=70.72 Aligned_cols=117 Identities=13% Similarity=-0.034 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017414 7 LLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 83 (372)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 83 (372)
.+...+..+...+...|++++|...|++..+ .+...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3445555555666666666666666655442 234455555555556666666666665555532 223445555555
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 125 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 125 (372)
++...|++++|...++...+.. +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555566666665555555543 2334444445555544443
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=2.6e-08 Score=74.78 Aligned_cols=122 Identities=9% Similarity=-0.029 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCCC-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTEK-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
.++..+.+++...+.+.+++.+ .| +...+..+...+.+.|++++|+..|++..... +.+...|..+..++...
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~l-----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~ 83 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINAI-----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIK 83 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCCS-----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHhCC-----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 3456666666655554444322 12 44577888888889999999999999888853 34677888888889999
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 138 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 138 (372)
|++++|...|+++.+.. |.++..|..+..+|...|++++|...|++..+
T Consensus 84 g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 84 EQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp TCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999988875 55677888889999999999999999988764
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.79 E-value=6.6e-09 Score=82.18 Aligned_cols=170 Identities=11% Similarity=-0.043 Sum_probs=100.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 193 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 193 (372)
+......|+++++.+.++.-.+. ....+..+...+...|++++|+..|++..+.. |+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~----------- 77 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ----------- 77 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH-----------
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh-----------
Confidence 33444455566665555533221 23455566666667777777777777666532 110000000
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 017414 194 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLI 271 (372)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (372)
....-.. ......+..+..+|...|++++|...+++. ...| +...+..+..++...|++++|...++++.
T Consensus 78 ----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 78 ----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp ----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000000 001356777888888999999999988887 3333 67788888999999999999999999999
Q ss_pred HhCCCCcchHHHHHHHHHHcCCchhHH-HHHHHHHhC
Q 017414 272 KLEPHNSGNYAILSNIYAILGRWNESG-KIRKVMRDM 307 (372)
Q Consensus 272 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 307 (372)
++.|.++.++..+..++...++.+++. ..++.|...
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988888887 466655443
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.79 E-value=1.3e-07 Score=71.95 Aligned_cols=125 Identities=10% Similarity=-0.035 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 121 (372)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34455555555555555555555555432 2244455555555555555666555555555543 334455555555556
Q ss_pred hcCCHHHHHHHHHhccc---CCcchHH--HHHHHHHhcCChhHHHHHHHHHH
Q 017414 122 KSGKIGKALQVFENMKN---KSVITWT--TMIAGLALHGLGREALDMFSRME 168 (372)
Q Consensus 122 ~~g~~~~A~~~~~~~~~---~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 168 (372)
..|++++|...|++..+ .+...+. ..+..+...|++++|++.+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666555442 1222332 22223455566666666665543
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.78 E-value=6.8e-08 Score=71.78 Aligned_cols=96 Identities=15% Similarity=0.035 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+++|.++.++..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666777788888888888888877 3334 66777788888888888888888888888888888888888888888
Q ss_pred HcCCchhHHHHHHHHHhC
Q 017414 290 ILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~ 307 (372)
..|++++|.+.|++....
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877543
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=3.9e-07 Score=71.89 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=12.0
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
+..+...+...|++++|...+++..
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444445555555555554443
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1.8e-07 Score=77.01 Aligned_cols=129 Identities=10% Similarity=-0.019 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcc
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPN--EITFIAILSACCH 188 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 188 (372)
...+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34445555556666666666655543 211234444445556666666666665333221 110 1234445555666
Q ss_pred cCchHHHHHHHHHhHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC
Q 017414 189 VGLVELGRRYFNIMKSRYGIEPK--IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN 243 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~ 243 (372)
.|++++|+..|++.... ...|. .........++.+.|+.++|..+|+++ ...|+
T Consensus 184 LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66666666666665521 11132 234444555555666666666666655 33344
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.1e-07 Score=68.89 Aligned_cols=96 Identities=11% Similarity=-0.028 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+++|.++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345566667777777777777777776 2233 56677777777888888888888888888888877778888888888
Q ss_pred HcCCchhHHHHHHHHHhC
Q 017414 290 ILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~ 307 (372)
..|++++|...+++....
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888887776543
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.73 E-value=2.8e-08 Score=74.53 Aligned_cols=104 Identities=9% Similarity=-0.090 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH
Q 017414 176 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAA 253 (372)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~ 253 (372)
...+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|...|++. ...| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445666777788888888888888888753 2446777888888888889999999888887 3334 55677888888
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 254 SNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
+...|++++|...|+++.++.|.++...
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 8999999999999999999888776543
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.72 E-value=6.9e-06 Score=69.50 Aligned_cols=241 Identities=9% Similarity=-0.007 Sum_probs=157.6
Q ss_pred hhHHHHHHH---HHhCCCcc-HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcC
Q 017414 41 ISWTTLIAG---YAQMDQPN-EAITLFRRMQVENVKP-DEIAMLAALSACAQLGA----------VELGEWIHNYIEQYG 105 (372)
Q Consensus 41 ~~~~~l~~~---~~~~~~~~-~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~ 105 (372)
..|..+... ..+.|.++ +|+.++..+... .| +..+|+.--.++...+. ++++..+++.+....
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 345444433 34566666 789999999875 45 34455544333333332 577888888888775
Q ss_pred CCCchhHHHHHHHHHHhcC--CHHHHHHHHHhccc---CCcchHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHH
Q 017414 106 LNTIVPLNNALIDMYAKSG--KIGKALQVFENMKN---KSVITWTTMIAGLALHGL-GREALDMFSRMERARVKPNEITF 179 (372)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~ 179 (372)
+.+..+|+.-..++...| .+++++.+++++.+ .|..+|+.-..++...|. ++++++.++++.+..+ -|...|
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW 182 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSW 182 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 667888888777888877 48899999998875 355677777777788888 5899999999988753 355666
Q ss_pred HHHHHHhccc--------------CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 017414 180 IAILSACCHV--------------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA-----------GYLQEAEKL 234 (372)
Q Consensus 180 ~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~ 234 (372)
+.....+.+. +.++++.+.+...... .+-|...|+-+-..+.+. +.++++++.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 6544443333 4577888888888753 244666676554444444 346777777
Q ss_pred HhhC-CCCCCHHHHHHHHHH-----HHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 235 LRRM-PFEANAAIWGSLLAA-----SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 235 ~~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
++++ ...||. .|..+..+ ....+..+++...+.++.+++|....-|..+...+
T Consensus 261 ~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 261 CKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 7776 445543 23322221 12346667788888888888887777776665544
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.71 E-value=1.1e-07 Score=81.70 Aligned_cols=145 Identities=9% Similarity=-0.045 Sum_probs=95.0
Q ss_pred CCHHHHHHHHhccCC--C-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHH
Q 017414 23 GDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD--------------EIAMLAALSAC 85 (372)
Q Consensus 23 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--------------~~~~~~l~~~~ 85 (372)
+++++|...|+...+ | +...|..+...+.+.|++++|+..|++..+...... ...|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544433 2 345667777777777777777777777766431111 36677777777
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHH-H
Q 017414 86 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREA-L 161 (372)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a-~ 161 (372)
.+.|++++|...++++++.. +.+...+..+..+|...|++++|...|++..+ .+..++..+..++.+.|++++| .
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777764 44666777777777777777777777776653 2445677777777777777777 3
Q ss_pred HHHHHHH
Q 017414 162 DMFSRME 168 (372)
Q Consensus 162 ~~~~~~~ 168 (372)
..|+.|.
T Consensus 286 ~~~~~~~ 292 (336)
T 1p5q_A 286 KLYANMF 292 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555554
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.69 E-value=3.1e-07 Score=67.45 Aligned_cols=98 Identities=10% Similarity=-0.010 Sum_probs=75.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 210 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
.+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|...++++.+.+|.++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777777788888888888887776 2233 566777777788888888888888888888888888888888888
Q ss_pred HHHcCCchhHHHHHHHHHhC
Q 017414 288 YAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~ 307 (372)
+...|++++|...+++....
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888877543
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=1.4e-07 Score=66.45 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC--CcchHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH--NSGNYAILSNI 287 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 287 (372)
...+..+...+...|++++|...+++. ... .+...+..+...+...|++++|...++++.+..|. +..++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445566777777788888888877776 222 35667777777888888888888888888888887 77888888888
Q ss_pred HHHc-CCchhHHHHHHHHHhCC
Q 017414 288 YAIL-GRWNESGKIRKVMRDMG 308 (372)
Q Consensus 288 ~~~~-g~~~~a~~~~~~m~~~g 308 (372)
+... |++++|.+.++......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888776543
No 152
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.69 E-value=3.4e-06 Score=71.77 Aligned_cols=225 Identities=11% Similarity=0.026 Sum_probs=161.8
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcccC---CcchHHHHHHHHHhc-C-Chh
Q 017414 85 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG-KIGKALQVFENMKNK---SVITWTTMIAGLALH-G-LGR 158 (372)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~ 158 (372)
..+.+..++|..+++.++..+ +.+..+|+.-..++...| .+++++.+++.+... +..+|+.-...+.+. + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 344455678999999999886 567788888888888888 599999999998764 446777777777776 7 899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchH--------HHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC---
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGLVE--------LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY--- 227 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 227 (372)
+++++++++.+.. +-+..+++.-.-.+.+.|.++ ++.+.++++.+. -+-+...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccccc
Confidence 9999999999875 336667765555555555555 899999999864 24577888888888888776
Q ss_pred ----HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCh--------------------hHHHHHHHHHHHhC------C
Q 017414 228 ----LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV--------------------ELGECALQHLIKLE------P 275 (372)
Q Consensus 228 ----~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p 275 (372)
++++++.+++. ...| |...|+.+-..+...|+. .....+...+.... +
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 68888888776 3344 777788777777776654 22233333332222 3
Q ss_pred CCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCc
Q 017414 276 HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPG 314 (372)
Q Consensus 276 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 314 (372)
.++.+...|+..|...|+.++|.++++.+.+ ...|...
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~ 337 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRA 337 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHH
Confidence 4666788999999999999999999999853 3444333
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=1.1e-07 Score=70.60 Aligned_cols=94 Identities=14% Similarity=0.028 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 121 (372)
.+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...++.+.+.. +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 44455555666666666666666665542 2345555566666666666666666666666654 344555555666666
Q ss_pred hcCCHHHHHHHHHhcc
Q 017414 122 KSGKIGKALQVFENMK 137 (372)
Q Consensus 122 ~~g~~~~A~~~~~~~~ 137 (372)
..|++++|...|++..
T Consensus 98 ~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR 113 (142)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666666554
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.68 E-value=4.4e-07 Score=64.39 Aligned_cols=109 Identities=13% Similarity=0.011 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 254 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 254 (372)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444555555666666666666666532 1234555566666666666666666666655 2222 455566666666
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 017414 255 NIYGDVELGECALQHLIKLEPHNSGNYAILSNI 287 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 287 (372)
...|++++|...++++.+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 667777777777777777666666555554443
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.68 E-value=2.3e-07 Score=71.63 Aligned_cols=127 Identities=9% Similarity=0.019 Sum_probs=94.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHH-HHhcCCH--
Q 017414 152 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL-LGRAGYL-- 228 (372)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 228 (372)
...|++++|+..+++..+.. +.+...+..+...|...|++++|...|+++.+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888877763 345677788888888888999999888888753 13456677777777 7788887
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 229 QEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 229 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888887 3334 567778888888999999999999999999888776433
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.66 E-value=2.5e-07 Score=70.56 Aligned_cols=109 Identities=10% Similarity=-0.045 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 017414 175 NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLA 252 (372)
Q Consensus 175 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~ 252 (372)
+...+..+...+...|++++|...|++..+. .+.+...|..+..+|...|++++|+..|++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456677777888888888888888888753 2336677788888888888888888888876 3334 5667777888
Q ss_pred HHHHcCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 017414 253 ASNIYGDVELGECALQHLIKLEPHNSGNYAILS 285 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 285 (372)
++...|++++|...++++.++.|.++..+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 888888888888888888888887776554443
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=1.9e-07 Score=67.24 Aligned_cols=94 Identities=17% Similarity=-0.016 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHc
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 291 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 291 (372)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+++|.++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455677888999999999999887 3344 6778888888999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhC
Q 017414 292 GRWNESGKIRKVMRDM 307 (372)
Q Consensus 292 g~~~~a~~~~~~m~~~ 307 (372)
|++++|...+++....
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887543
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=4e-07 Score=65.87 Aligned_cols=110 Identities=7% Similarity=-0.123 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 017414 177 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 254 (372)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 254 (372)
..+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555666677777777777777777642 2335667777777777778888887777776 3334 466777777788
Q ss_pred HHcCChhHHHHHHHHHHHhC------CCCcchHHHHHHHH
Q 017414 255 NIYGDVELGECALQHLIKLE------PHNSGNYAILSNIY 288 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 288 (372)
...|++++|...++++.++. |.++.+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888877 66665555555443
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=8.7e-07 Score=65.81 Aligned_cols=111 Identities=13% Similarity=-0.009 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 017414 175 NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWG 248 (372)
Q Consensus 175 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~ 248 (372)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 445566666677777777777777777763 3444 466666777777777777777777766 2233 556677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 249 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
.+..++...|++++|...++++.+..|.++.++..+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777778888888888888888888887766665554443
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=6.6e-07 Score=66.47 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=89.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHH
Q 017414 210 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL 284 (372)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 284 (372)
.+...+..+...+...|++++|...|++. ...|+ ...+..+..++...|++++|...++++.+..|.++.++..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35678888999999999999999999998 66776 67788888999999999999999999999999999999999
Q ss_pred HHHHHHcCCchhHHHHHHHHHhC
Q 017414 285 SNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 285 ~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
+.++...|++++|...+++....
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999988654
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.63 E-value=5.6e-07 Score=68.54 Aligned_cols=95 Identities=8% Similarity=-0.069 Sum_probs=65.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 141 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..+|...|++++|...|+++.+. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3456667777777777777777777777653 235566667777777777777777777777743 2334666777777
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 017414 221 LLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~ 238 (372)
+|...|++++|...|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 777777777777777766
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=7.3e-08 Score=76.07 Aligned_cols=146 Identities=8% Similarity=-0.023 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCC-CC--------------
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK-PD-------------- 74 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~-------------- 74 (372)
+..+......|+++++.+.|+.-.+ .....+..+...+...|++++|+..|++..+.... |+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 3444555666777777777765433 23456777888888888888888888888774211 10
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHH
Q 017414 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGL 151 (372)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 151 (372)
...+..+..++...|++++|...++.+.+.. +.+...+..+..+|...|++++|...|++..+ .+..++..+..++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 1455555555666666666666666655543 33444555555555555555555555554432 1233444444444
Q ss_pred HhcCChhH
Q 017414 152 ALHGLGRE 159 (372)
Q Consensus 152 ~~~~~~~~ 159 (372)
...++.++
T Consensus 167 ~~~~~~~~ 174 (198)
T 2fbn_A 167 NKLKEARK 174 (198)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 44443333
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=5.7e-07 Score=63.76 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999988 3334 6778888999999999999999999999999999999999999999
Q ss_pred HHcCCchhHHHHHHHHHhC
Q 017414 289 AILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (372)
...|++++|.+.+++....
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988654
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.62 E-value=2.5e-07 Score=67.26 Aligned_cols=94 Identities=4% Similarity=-0.095 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc-------chHHH
Q 017414 213 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS-------GNYAI 283 (372)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~ 283 (372)
..+..+...+.+.|++++|+..|++. .+.| +...|..+..+|...|++++|+..+++++++.|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888888999999999999887 4344 567788888899999999999999999998877554 36777
Q ss_pred HHHHHHHcCCchhHHHHHHHHHh
Q 017414 284 LSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
++.++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888999999999999987654
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.2e-06 Score=78.03 Aligned_cols=162 Identities=4% Similarity=-0.212 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCH----HHHHHHHHHhcccCchHHHHHHHHHhHHhc---CCCc-CHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERAR-VKPNE----ITFIAILSACCHVGLVELGRRYFNIMKSRY---GIEP-KIEQ 214 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~ 214 (372)
+..++..|...|++++|.+.+.++...- ..++. ...+.+...+...|+.+.|..++....... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777777665421 11111 223334445556778888888777665321 2222 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-----C--CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC---CCC----cc
Q 017414 215 YGCMIDLLGRAGYLQEAEKLLRRM-----P--FEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLE---PHN----SG 279 (372)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 279 (372)
+..+...|...|++++|..+++++ + .++ ...++..++..|...|++++|..+++++.... +.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677888888888888888888766 1 112 24467777788888889888888888887633 222 13
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 280 NYAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
.+..++..+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666777778888888888776653
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.58 E-value=3.9e-07 Score=64.02 Aligned_cols=98 Identities=11% Similarity=0.022 Sum_probs=51.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC--CHHHHHH
Q 017414 6 RLLYKFWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP--DEIAMLA 80 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ 80 (372)
+.+..++..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +. +...+..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 34445555555555555555555555555442 234455555555555555555555555555532 22 3445555
Q ss_pred HHHHHHcc-CChHHHHHHHHHHHHc
Q 017414 81 ALSACAQL-GAVELGEWIHNYIEQY 104 (372)
Q Consensus 81 l~~~~~~~-~~~~~a~~~~~~~~~~ 104 (372)
+..++... |++++|.+.++...+.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 55555555 5555555555555544
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=2e-05 Score=70.05 Aligned_cols=189 Identities=8% Similarity=-0.052 Sum_probs=139.5
Q ss_pred HHHHHhcCCHHHHHHHHhccCC--CC------------------hhhHHHHHHHHHhCCCccHHHHHHHHHHhCC-CCCC
Q 017414 16 VAGYAKVGDLNNARALFELMTE--KN------------------VISWTTLIAGYAQMDQPNEAITLFRRMQVEN-VKPD 74 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~--~~------------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~ 74 (372)
...+.+.|++++|++.|..+.+ ++ ..++..++..|...|++++|.+.+.++.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999988753 11 1247889999999999999999999886531 1122
Q ss_pred H----HHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhccc----C--
Q 017414 75 E----IAMLAALSACAQLGAVELGEWIHNYIEQY----GLNT-IVPLNNALIDMYAKSGKIGKALQVFENMKN----K-- 139 (372)
Q Consensus 75 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-- 139 (372)
. .+.+.+-..+...|+.+.+..++...... +..+ -..++..|+..|...|++++|..++++... .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 12333344455678999999998877642 2222 246778899999999999999999987642 1
Q ss_pred ---CcchHHHHHHHHHhcCChhHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 140 ---SVITWTTMIAGLALHGLGREALDMFSRMERA--RV-KP-N--EITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 140 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
...++..++..|...|++++|..++++.... .. .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1357888999999999999999999987642 11 22 1 34566777888999999999988887764
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.57 E-value=1.3e-06 Score=63.32 Aligned_cols=27 Identities=11% Similarity=-0.042 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
|..+..++...|++++|++.|++.+..
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444555555666666666666665543
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.54 E-value=8.9e-07 Score=64.93 Aligned_cols=101 Identities=10% Similarity=-0.097 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHH
Q 017414 174 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLL 251 (372)
Q Consensus 174 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~ 251 (372)
.+...+..+...+...|++++|...|+.+... .+.+...+..+..++...|++++|...+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34566777777777788888888888777743 2335677777778888888888888887776 2233 566777788
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 252 AASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
.++...|++++|...++++.+..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888887765
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.53 E-value=1.1e-06 Score=78.84 Aligned_cols=128 Identities=11% Similarity=0.018 Sum_probs=95.4
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCc-------------CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-------------KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA- 242 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~- 242 (372)
.+..+...+.+.|++++|...|+++.+...-.+ ....|..+..+|.+.|++++|+..+++. ...|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444555555566666666666666553211111 1577888999999999999999999987 3334
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHH-HHHHHH
Q 017414 243 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK-IRKVMR 305 (372)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 305 (372)
+...|..+..++...|++++|...|+++++++|.+..++..+..++.+.|+++++.+ .++.|.
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999998875 566654
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.53 E-value=4.9e-07 Score=81.60 Aligned_cols=118 Identities=9% Similarity=-0.000 Sum_probs=92.0
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV 260 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 260 (372)
...+.+.|++++|.+.|+++.+. -+.+...|..+..+|.+.|++++|...+++. ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34566778888888888888853 2335778888888888999999999888887 4444 567788888899999999
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHH--HHHcCCchhHHHHHH
Q 017414 261 ELGECALQHLIKLEPHNSGNYAILSNI--YAILGRWNESGKIRK 302 (372)
Q Consensus 261 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 302 (372)
++|...++++.+..|.++..+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999888888888777 888899999998887
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.53 E-value=4.5e-05 Score=64.52 Aligned_cols=218 Identities=14% Similarity=0.032 Sum_probs=155.3
Q ss_pred HccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHhccc---CCcchHHHHHHHH
Q 017414 86 AQLGAV-ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK----------IGKALQVFENMKN---KSVITWTTMIAGL 151 (372)
Q Consensus 86 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~l~~~~ 151 (372)
.+.|.+ ++|..+.+.+...+ |.+..+|+.--.++...|. +++++.+++.+.. .+..+|+.-..++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445555 48999999999875 4456667655555544443 6788888888764 4567888888888
Q ss_pred HhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc-hHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc---
Q 017414 152 ALHGL--GREALDMFSRMERARVKPNEITFIAILSACCHVGL-VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA--- 225 (372)
Q Consensus 152 ~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 225 (372)
.+.++ +++++.+++++.+.. +-+...|+.-.-++...|. ++++.+.++.+.+. -+.|...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 88884 899999999999875 3466777766666667777 58999999999964 255777777766665554
Q ss_pred -----------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHhCCCCcchH
Q 017414 226 -----------GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY-----------GDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 226 -----------g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
+.++++++.+.+. ...| |...|+.+-..+... +.++++++.++++.+..|++..++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4578888888877 3344 667777665555544 357899999999999999886555
Q ss_pred HHHHHHH---HHcCCchhHHHHHHHHHhC
Q 017414 282 AILSNIY---AILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 282 ~~l~~~~---~~~g~~~~a~~~~~~m~~~ 307 (372)
..++... ...|..+++...+.++...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4444322 2357777888888888653
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.51 E-value=6.2e-07 Score=64.94 Aligned_cols=109 Identities=4% Similarity=-0.086 Sum_probs=64.1
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC----CCC----HHHHH
Q 017414 178 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF----EAN----AAIWG 248 (372)
Q Consensus 178 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~----~~~----~~~~~ 248 (372)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...+...|++++|...+++. .. .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444555555666666666666665532 1334455556666666666666666666655 11 112 45566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 249 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 249 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
.+..++...|++++|...++++.+..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 666777777777777777777777766 4555555544443
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.50 E-value=8.6e-07 Score=64.26 Aligned_cols=94 Identities=14% Similarity=0.013 Sum_probs=42.0
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHH
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKI---EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAAS 254 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~ 254 (372)
...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|++. ...|+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 334444555555555555554321 1111 23444444455555555555555444 11121 23344444444
Q ss_pred HHcCChhHHHHHHHHHHHhCCCCc
Q 017414 255 NIYGDVELGECALQHLIKLEPHNS 278 (372)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~p~~~ 278 (372)
...|++++|...++++.+..|+++
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCh
Confidence 455555555555555555444443
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.49 E-value=9e-07 Score=65.89 Aligned_cols=91 Identities=15% Similarity=-0.015 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CCCCC-------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHh-------C
Q 017414 216 GCMIDLLGRAGYLQEAEKLLRRM-PFEAN-------------AAIWGSLLAASNIYGDVELGECALQHLIKL-------E 274 (372)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~~~-~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~ 274 (372)
......+.+.|++++|+..|++. .+.|+ ...|..+..++...|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34445555666666666666554 22222 237888888888999999999999999988 9
Q ss_pred CCCcchH----HHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 275 PHNSGNY----AILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 275 p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
|++...| ...+.++...|++++|+..|++...
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9888888 9999999999999999999988754
No 176
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.48 E-value=3.1e-05 Score=70.06 Aligned_cols=289 Identities=10% Similarity=-0.036 Sum_probs=151.5
Q ss_pred cCCccHHHHHHHHHHHH----hcCCHHHHHHHHhccCC-CCh---hhHHHHHHHHH-------------hCCCccHHHHH
Q 017414 4 LSRLLYKFWNTMVAGYA----KVGDLNNARALFELMTE-KNV---ISWTTLIAGYA-------------QMDQPNEAITL 62 (372)
Q Consensus 4 ~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~-~~~---~~~~~l~~~~~-------------~~~~~~~A~~~ 62 (372)
.++.+..+|...+..+. .+++++.+..+|++... |.. ..|......-. ..+.+..|..+
T Consensus 80 ~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~ 159 (493)
T 2uy1_A 80 NYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQR 159 (493)
T ss_dssp TCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHH
Confidence 35667788888887765 35678889999988765 311 11211111000 00122233333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcc--CC-----hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 017414 63 FRRMQVENVKPDEIAMLAALSACAQL--GA-----VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFEN 135 (372)
Q Consensus 63 ~~~m~~~~~~p~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 135 (372)
++.+...-...+...|...+.--... +- .+.+..+|++++... +.+..+|...+..+.+.|+.++|..+|++
T Consensus 160 y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~er 238 (493)
T 2uy1_A 160 YQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVER 238 (493)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43333210001223444443332221 11 234667777777653 55677777777777788888888888876
Q ss_pred cccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc---------CCCC---CHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 136 MKNKSVITWTTMIAGLALHGLGREALDMFSRMERA---------RVKP---NEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
.... +.....- ..|......++. ++.+.+. +..+ ....|...+....+.+..+.|..+|+.+
T Consensus 239 Ai~~-P~~~~l~-~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A- 312 (493)
T 2uy1_A 239 GIEM-SDGMFLS-LYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL- 312 (493)
T ss_dssp HHHH-CCSSHHH-HHHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-
T ss_pred HHhC-CCcHHHH-HHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 5433 2211111 122222122222 2222211 0001 1234555555555666788888888877
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 204 SRYGIEPKIEQYGCMIDLLGRAG-YLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 204 ~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
... ..+...|...+..-...+ +.+.|..+|+.. ...-+...|...+......|+.+.|..+|+++ +.....
T Consensus 313 ~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~l 386 (493)
T 2uy1_A 313 GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRM 386 (493)
T ss_dssp TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHH
T ss_pred hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHH
Confidence 221 123444433232222223 577888888776 21123444566666667778888888887776 234456
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHH
Q 017414 281 YAILSNIYAILGRWNESGKIRKVMR 305 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (372)
|...+..-...|+.+.+..++++..
T Consensus 387 w~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 387 WDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666667788888877777665
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.47 E-value=3.1e-06 Score=61.22 Aligned_cols=91 Identities=13% Similarity=0.026 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC---HHHHHHH
Q 017414 145 TTMIAGLALHGLGREALDMFSRMERARVKPNE---ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK---IEQYGCM 218 (372)
Q Consensus 145 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 218 (372)
..+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...|+.+.+.. +.+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 33445555566666666666665554211 11 244445555556666666666666655421 112 3445555
Q ss_pred HHHHHhcCCHHHHHHHHhhC
Q 017414 219 IDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~ 238 (372)
..++...|++++|...|+++
T Consensus 83 a~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55666666666666666555
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.46 E-value=3.4e-06 Score=76.12 Aligned_cols=118 Identities=9% Similarity=-0.016 Sum_probs=74.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCch
Q 017414 116 LIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 192 (372)
Q Consensus 116 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 192 (372)
+...+.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 44556677777888777776653 245677777777777777777777777777763 23456667777777777777
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHH--HHhcCCHHHHHHHHh
Q 017414 193 ELGRRYFNIMKSRYGIEPKIEQYGCMIDL--LGRAGYLQEAEKLLR 236 (372)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 236 (372)
++|.+.|+++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777431 2223344444444 666777777777776
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.46 E-value=2.8e-06 Score=64.45 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 245 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...|++...
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34555566666666666666666666666666666666666666666666666666665543
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.44 E-value=1.6e-06 Score=62.21 Aligned_cols=93 Identities=13% Similarity=-0.050 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 122 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (372)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444455555666666666666555532 2244555555555555666666666665555543 3344455555555555
Q ss_pred cCCHHHHHHHHHhcc
Q 017414 123 SGKIGKALQVFENMK 137 (372)
Q Consensus 123 ~g~~~~A~~~~~~~~ 137 (372)
.|++++|...|++..
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555543
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=1.5e-06 Score=62.75 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC-------cchHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-------SGNYA 282 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 282 (372)
...+..+...+...|++++|...|++. .. ..+...+..+...+...|++++|...++++.+..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456778889999999999999999987 22 3467788889999999999999999999999987765 77899
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 283 ILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.++.++...|++++|.+.+++....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988663
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.42 E-value=2.8e-06 Score=73.90 Aligned_cols=89 Identities=9% Similarity=-0.041 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 288 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 288 (372)
+...|..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...++++.++.|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4577888999999999999999999988 5555 6778888999999999999999999999999999999999999999
Q ss_pred HHcCCchhHHH
Q 017414 289 AILGRWNESGK 299 (372)
Q Consensus 289 ~~~g~~~~a~~ 299 (372)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888887765
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.39 E-value=1.2e-06 Score=66.60 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCc-chHHHHHHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS-GNYAILSNI 287 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 287 (372)
+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++.+++|.++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3467888888999999999999999887 3344 677888899999999999999999999999999877 444444444
Q ss_pred HH
Q 017414 288 YA 289 (372)
Q Consensus 288 ~~ 289 (372)
..
T Consensus 142 ~~ 143 (162)
T 3rkv_A 142 TE 143 (162)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.39 E-value=3.6e-06 Score=63.24 Aligned_cols=128 Identities=12% Similarity=-0.020 Sum_probs=69.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCC----HHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN----AAI 246 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~----~~~ 246 (372)
+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++. +..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444555555555555444421100011 124445555556666666666655554 10111 334
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCC------CCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKLEP------HNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+..+...+...|++++|...++++.+..+ ....++..++..+...|++++|.+.+++...
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55566667777777777777777765321 1234567777788888888888887776643
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.38 E-value=4.6e-07 Score=64.71 Aligned_cols=90 Identities=18% Similarity=0.113 Sum_probs=48.3
Q ss_pred cCchHHHHHHHHHhHHhcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHH
Q 017414 189 VGLVELGRRYFNIMKSRYG--IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
.|++++|...|+++.+. + -+.+...+..+..+|...|++++|...|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666666631 1 1223355555666666666666666666655 2223 3445555555666666666666
Q ss_pred HHHHHHHHhCCCCcc
Q 017414 265 CALQHLIKLEPHNSG 279 (372)
Q Consensus 265 ~~~~~~~~~~p~~~~ 279 (372)
..++++.+..|.++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 666666666665543
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.37 E-value=2.5e-06 Score=76.63 Aligned_cols=145 Identities=9% Similarity=-0.052 Sum_probs=100.2
Q ss_pred cCCHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC---------------HHHHHHHHH
Q 017414 22 VGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD---------------EIAMLAALS 83 (372)
Q Consensus 22 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---------------~~~~~~l~~ 83 (372)
.+++++|...|+...+ .....|..+...+.+.|++++|+..|++.++.. +.+ ...|..+..
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554443 234567777777888888888888888777642 112 467777888
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHH
Q 017414 84 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREA 160 (372)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 160 (372)
++.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|++..+. +..++..+..++.+.++++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888765 456777777888888888888888888877642 456777788888888887776
Q ss_pred HH-HHHHHH
Q 017414 161 LD-MFSRME 168 (372)
Q Consensus 161 ~~-~~~~~~ 168 (372)
.+ .+..|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 64 444444
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.37 E-value=1.3e-06 Score=62.30 Aligned_cols=82 Identities=12% Similarity=0.111 Sum_probs=35.5
Q ss_pred CChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 017414 155 GLGREALDMFSRMERARV--KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 232 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 232 (372)
|++++|+..|++..+.+. +.+...+..+..+|...|++++|...|+++.+. .+-+...+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 444555555555444320 112233444444445555555555555555432 1223444444455555555555555
Q ss_pred HHHhhC
Q 017414 233 KLLRRM 238 (372)
Q Consensus 233 ~~~~~~ 238 (372)
..+++.
T Consensus 82 ~~~~~a 87 (117)
T 3k9i_A 82 ELLLKI 87 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.37 E-value=8.1e-07 Score=76.43 Aligned_cols=144 Identities=11% Similarity=-0.063 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 222 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 222 (372)
.+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 4555555566666666666666666554 233221 12223333222111 1 12667788888
Q ss_pred HhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHH-HHHcCCchhHHH
Q 017414 223 GRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI-YAILGRWNESGK 299 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a~~ 299 (372)
.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++.++.|.++.++..|..+ ....+..+.+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888876 3334 667788888888888888888888888888888888777777766 344566677777
Q ss_pred HHHHHHh
Q 017414 300 IRKVMRD 306 (372)
Q Consensus 300 ~~~~m~~ 306 (372)
.|+.|..
T Consensus 321 ~~~~~l~ 327 (338)
T 2if4_A 321 MYKGIFK 327 (338)
T ss_dssp -------
T ss_pred HHHHhhC
Confidence 7777643
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.35 E-value=2.9e-06 Score=63.83 Aligned_cols=95 Identities=9% Similarity=-0.010 Sum_probs=46.9
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhC-------CCCC-CHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEA-NAAI 246 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~-------~~~~-~~~~ 246 (372)
+..+...+...|++++|...+++..+...-..+ ...+..+...+...|++++|...+++. +..+ ....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 334444444555555555555444321100001 233444555555566666555555544 1001 1234
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHh
Q 017414 247 WGSLLAASNIYGDVELGECALQHLIKL 273 (372)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (372)
+..+...+...|++++|...++++.++
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555666666777777777777776653
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.29 E-value=3.2e-06 Score=72.67 Aligned_cols=152 Identities=13% Similarity=0.016 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 017414 110 VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189 (372)
Q Consensus 110 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 189 (372)
...+..+...+.+.|++++|...|++..+.+.... .+...++++++...+. ...+..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788899999999999999998764322211 1222333444433221 13667778888889
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHH-HHHcCChhHHHHH
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAA-SNIYGDVELGECA 266 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~-~~~~~~~~~a~~~ 266 (372)
|++++|...++++.+. .+.+...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988853 2446788888899999999999999999887 55564 3344444444 2344667788888
Q ss_pred HHHHHHhCCCCc
Q 017414 267 LQHLIKLEPHNS 278 (372)
Q Consensus 267 ~~~~~~~~p~~~ 278 (372)
++++....|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 888888777654
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.27 E-value=9.2e-06 Score=73.02 Aligned_cols=124 Identities=14% Similarity=0.057 Sum_probs=99.6
Q ss_pred HhcccCchHHHHHHHHHhHHhcC--C---Cc-CHHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCCCH-HHHH
Q 017414 185 ACCHVGLVELGRRYFNIMKSRYG--I---EP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEANA-AIWG 248 (372)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~---------~~~~~~-~~~~ 248 (372)
.+...|++++|+.++++..+... + .| ...+++.|..+|...|++++|..++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999988775321 1 12 2477899999999999999999988876 334543 4688
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH-----hCCCCcch---HHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 249 SLLAASNIYGDVELGECALQHLIK-----LEPHNSGN---YAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 249 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
.|...|..+|++++|+.+++++.+ ++|++|.+ ...|..++...|.+++|..+|..+++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999987 67877654 4577788889999999999999998754
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=8.3e-06 Score=70.93 Aligned_cols=117 Identities=8% Similarity=-0.050 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC-------------------CChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCC
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTE-------------------KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV 71 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 71 (372)
.|..+...+.+.|++++|+..|++..+ .+...|..+..+|.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 355566666666666666666665443 122345555555555555555555555555432
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 017414 72 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 129 (372)
Q Consensus 72 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 129 (372)
+.+...|..+..++...|++++|...++++.+.. +.+...+..+..++...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2234445555555555555555555555555543 22344444444444444444443
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.25 E-value=0.0001 Score=67.88 Aligned_cols=137 Identities=7% Similarity=-0.070 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC--chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC-CHHHHHH
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVG--LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG-YLQEAEK 233 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~ 233 (372)
++++++.++++.+.. +-+..+|..-.-++.+.+ +++++.+.++++.+. -+-+...|+.-..++.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHH
Confidence 666677777666653 224555555555555666 557777777777753 2335566666666666666 6777777
Q ss_pred HHhhC-CCCC-CHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchh
Q 017414 234 LLRRM-PFEA-NAAIWGSLLAASNIY--------------GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 296 (372)
Q Consensus 234 ~~~~~-~~~~-~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 296 (372)
.++++ ...| |...|+.....+... +.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 77776 4344 556666666655543 457899999999999999999999999999998887554
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.24 E-value=1.9e-06 Score=64.12 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-CC-------CCC-HHHH----HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 214 QYGCMIDLLGRAGYLQEAEKLLRRM-PF-------EAN-AAIW----GSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~~~~~~-~~-------~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777777777777777777665 44 775 4567 888889999999999999999999999887765
Q ss_pred HHHH
Q 017414 281 YAIL 284 (372)
Q Consensus 281 ~~~l 284 (372)
+..+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 5444
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=5.6e-06 Score=57.97 Aligned_cols=92 Identities=13% Similarity=-0.002 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC------cchHH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNYA 282 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 282 (372)
+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|...++++.++.|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888999999999988887 3334 67778888889999999999999999999999987 66778
Q ss_pred HHHHHHHHcCCchhHHHHHH
Q 017414 283 ILSNIYAILGRWNESGKIRK 302 (372)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~ 302 (372)
.++.++...|+++.|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888887766554
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.16 E-value=1.6e-05 Score=53.23 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777778888888888888888876 2233 56678888888899999999999999999999988888888888876
Q ss_pred HcC
Q 017414 290 ILG 292 (372)
Q Consensus 290 ~~g 292 (372)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.12 E-value=1.9e-05 Score=54.35 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 243 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+...+..+..++...|++++|+..++++.+.+|.++.+|..++.+|...|++++|.+.+++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888888999999999999999999999999999999999999999999999999987754
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.06 E-value=3.2e-05 Score=54.60 Aligned_cols=76 Identities=12% Similarity=0.022 Sum_probs=51.1
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 231 AEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 231 a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
|...|++. ...| +...+..+...+...|++++|...++++.+..|.++.+|..++.+|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444 2233 4556666667777777777777777777777777777777777777777777777777776644
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=4.7e-06 Score=58.36 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc------hhHHH
Q 017414 41 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI------VPLNN 114 (372)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 114 (372)
..|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++...+.. +.+ ...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHH
Confidence 445556666666666666666666665542 2345556666666666666666666666666543 112 33344
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 017414 115 ALIDMYAKSGKIGKALQVFEN 135 (372)
Q Consensus 115 ~l~~~~~~~g~~~~A~~~~~~ 135 (372)
.+..++...|+.+.|...|++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 444455555544444444433
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.02 E-value=3.4e-05 Score=69.39 Aligned_cols=63 Identities=6% Similarity=-0.095 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 143 TWTTMIAGLALHGLGREALDMFSRMER-----ARV-KPNE-ITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
+++.|...|...|++++|+.++++.++ .|. .|+. .+...+..++...+.+++|+.+|..+++.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554444432 121 1222 23344445555666777777777776643
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.88 E-value=0.00014 Score=51.25 Aligned_cols=78 Identities=10% Similarity=-0.040 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
.|+..|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666543 3355666667777777777777777777777654 3445566667777777777777777766554
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.88 E-value=1.2e-05 Score=59.73 Aligned_cols=82 Identities=6% Similarity=0.050 Sum_probs=59.0
Q ss_pred CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcC-
Q 017414 226 GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGD----------VELGECALQHLIKLEPHNSGNYAILSNIYAILG- 292 (372)
Q Consensus 226 g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 292 (372)
+.+++|...+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3445555555444 2222 44444444444444443 569999999999999999999999999999875
Q ss_pred ----------CchhHHHHHHHHHhC
Q 017414 293 ----------RWNESGKIRKVMRDM 307 (372)
Q Consensus 293 ----------~~~~a~~~~~~m~~~ 307 (372)
++++|.+.|++..+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 899999999988664
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.87 E-value=0.00014 Score=49.01 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 241 EANAAIWGSLLAASNIYGD---VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
..+...+..+..++...++ .++|..+++++++.+|.++.+...++..+...|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567778888887765555 69999999999999999999999999999999999999999999977544
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.86 E-value=0.00015 Score=48.31 Aligned_cols=78 Identities=13% Similarity=0.070 Sum_probs=37.8
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 017414 42 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 121 (372)
Q Consensus 42 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 121 (372)
.+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555555555555555555554432 2234444555555555555555555555555443 223344444444433
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.00038 Score=50.94 Aligned_cols=109 Identities=11% Similarity=-0.078 Sum_probs=51.2
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHH
Q 017414 55 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK----SGKIGKAL 130 (372)
Q Consensus 55 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 130 (372)
++++|++.|++..+.| .|+.. +...|...+..++|...|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555544 23322 3344444445555555555555543 23334444555544 44555555
Q ss_pred HHHHhccc-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 017414 131 QVFENMKN-KSVITWTTMIAGLAL----HGLGREALDMFSRMERAR 171 (372)
Q Consensus 131 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 171 (372)
++|++..+ .++.++..|...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55554432 233444444444444 444555555555444443
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.83 E-value=0.0012 Score=60.61 Aligned_cols=174 Identities=9% Similarity=-0.053 Sum_probs=128.7
Q ss_pred hCCC-ccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 017414 52 QMDQ-PNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA----------VELGEWIHNYIEQYGLNTIVPLNNALIDMY 120 (372)
Q Consensus 52 ~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (372)
+.|. .++|++.++++.... +-+...|+.--.++...++ ++++...++.+.+.. +.+..+|+.-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 457899999998853 2345567766666666666 889999999998876 66788888888888
Q ss_pred HhcC--CHHHHHHHHHhccc---CCcchHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc-----
Q 017414 121 AKSG--KIGKALQVFENMKN---KSVITWTTMIAGLALHG-LGREALDMFSRMERARVKPNEITFIAILSACCHV----- 189 (372)
Q Consensus 121 ~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 189 (372)
.+.| +++++++.++++.+ .+..+|+.-..++.+.| .++++++.++++.+..+ -+...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccc
Confidence 8888 77999999998875 35568888888888888 88999999999887653 3566666555544432
Q ss_pred ---------CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 017414 190 ---------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 230 (372)
Q Consensus 190 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (372)
+.++++.+.++.+... .+-+...|.-+...+.+.++.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5678899999888853 24467888888888877776443
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.77 E-value=0.00046 Score=50.48 Aligned_cols=110 Identities=6% Similarity=-0.116 Sum_probs=56.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHh----cCCHHH
Q 017414 155 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQE 230 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 230 (372)
+++++|++.|++..+.| .|... +...|...+.+++|.++|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 34566666666666655 23332 445555555566666666666542 244445555555554 455555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHh
Q 017414 231 AEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKL 273 (372)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 273 (372)
|...|++.-..-+...+..|...|.. .++.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555554111334444444444444 44555555555555444
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.74 E-value=0.00049 Score=60.85 Aligned_cols=116 Identities=10% Similarity=0.078 Sum_probs=88.6
Q ss_pred HHHHHhcCCHHHHHHHHhhC---------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----hCCCCc---ch
Q 017414 219 IDLLGRAGYLQEAEKLLRRM---------PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIK-----LEPHNS---GN 280 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~---------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~ 280 (372)
+..+.+.|++++|+.++++. +..| ...+++.+..+|...|++++|+.+++++++ ++|.+| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566889999999998866 1122 235788899999999999999999999986 456655 46
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 017414 281 YAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 352 (372)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 352 (372)
++.|+..|..+|++++|..++++..+--. ..-...||...++...+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999998754211 1112358888888888877777665
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.72 E-value=4.1e-05 Score=56.83 Aligned_cols=111 Identities=13% Similarity=0.067 Sum_probs=63.5
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY----------LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY 257 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 257 (372)
+.+++|...++...+. -+.+...|..+..++...++ +++|+..|++. .+.| +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3445555555555432 12244455545555544443 34666666665 3344 445566666666655
Q ss_pred -----------CChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 017414 258 -----------GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 309 (372)
Q Consensus 258 -----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 309 (372)
|++++|++.|+++++++|.+. .|...+.. .++|-++.-.....+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHHHHHHHHHSSS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHhccCccccccc
Confidence 589999999999999999775 44333332 2555666555554433
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.57 E-value=0.00076 Score=49.49 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=42.8
Q ss_pred chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHhhC-CCC-C--CHHHHHHHHHHHHHcCChhHH
Q 017414 191 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG---YLQEAEKLLRRM-PFE-A--NAAIWGSLLAASNIYGDVELG 263 (372)
Q Consensus 191 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~a 263 (372)
....+.+.|.+.... + +++..+...+..++++.+ +++++..++++. ... | ....+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344445555544432 2 245555555555555555 344555555554 112 3 223334444455556666666
Q ss_pred HHHHHHHHHhCCCCc
Q 017414 264 ECALQHLIKLEPHNS 278 (372)
Q Consensus 264 ~~~~~~~~~~~p~~~ 278 (372)
.+.++.+++.+|.+.
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 666666666666544
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00059 Score=46.63 Aligned_cols=60 Identities=8% Similarity=0.067 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 017414 75 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFEN 135 (372)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 135 (372)
...+..+..++...|++++|...++.+.+.. +.+...|..+..+|...|++++|.+.|++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444445555555555555544443 22334444455555555555555555444
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.52 E-value=0.0005 Score=60.73 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=61.3
Q ss_pred ccCchHHHHHHHHHhHHhc--CCCc----CHHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCCCH-HHHHHHH
Q 017414 188 HVGLVELGRRYFNIMKSRY--GIEP----KIEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEANA-AIWGSLL 251 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~---------~~~~~~-~~~~~l~ 251 (372)
..|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4567788887777765421 1111 2356777778888888888887777765 233433 3577777
Q ss_pred HHHHHcCChhHHHHHHHHHHH-----hCCCCcch
Q 017414 252 AASNIYGDVELGECALQHLIK-----LEPHNSGN 280 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 280 (372)
..|..+|++++|+.+++++.+ ++|++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 778888888888888887766 55666533
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.48 E-value=0.00044 Score=61.13 Aligned_cols=83 Identities=13% Similarity=-0.056 Sum_probs=68.0
Q ss_pred hcCCHHHHHHHHhhC---------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH-----hCCCCc---chHHHHH
Q 017414 224 RAGYLQEAEKLLRRM---------PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIK-----LEPHNS---GNYAILS 285 (372)
Q Consensus 224 ~~g~~~~a~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 285 (372)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889988888765 22343 35788999999999999999999999987 556665 4688999
Q ss_pred HHHHHcCCchhHHHHHHHHHh
Q 017414 286 NIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~m~~ 306 (372)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998754
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.42 E-value=0.0015 Score=44.22 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=50.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 218 MIDLLGRAGYLQEAEKLLRRM-PFEA-NAA-IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~-~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
....+...|++++|...|++. ...| +.. .+..+..++...|++++|...++++.+.+|.++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456677888888888888877 3334 556 777888888888999999999999999988887666
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.39 E-value=0.0046 Score=52.67 Aligned_cols=69 Identities=13% Similarity=-0.044 Sum_probs=45.0
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 209 EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
+.++.+|..+...+...|++++|...++++ ...|+...|..+...+...|++++|.+.++++..++|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 445566666666666667777777777766 334666566556666667777777777777777777644
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.37 E-value=0.0021 Score=56.87 Aligned_cols=101 Identities=12% Similarity=-0.087 Sum_probs=78.3
Q ss_pred HHHHhcccCchHHHHHHHHHhHHhc--CCCc----CHHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCCCH-H
Q 017414 182 ILSACCHVGLVELGRRYFNIMKSRY--GIEP----KIEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEANA-A 245 (372)
Q Consensus 182 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~---------~~~~~~-~ 245 (372)
.+..+.+.|++++|..++++..+.. -+.| ...+++.+..+|...|++++|+.++++. +..|+. .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999999887431 1222 2467889999999999999999998876 334443 4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH-----hCCCCcchHH
Q 017414 246 IWGSLLAASNIYGDVELGECALQHLIK-----LEPHNSGNYA 282 (372)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 282 (372)
+++.|...|...|++++|+.+++++.+ ++|++|.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 688899999999999999999999987 6788775443
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.35 E-value=0.00077 Score=45.72 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=53.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 250 LLAASNIYGDVELGECALQHLIKLEPHNSG-NYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
....+...|++++|...++++.+..|.++. .+..++.+|...|++++|.+.|++....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 455778899999999999999999999999 9999999999999999999999988764
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.31 E-value=0.011 Score=57.05 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 017414 120 YAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRME 168 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 168 (372)
....|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 344566666666655442 33456666666666666666666666543
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.27 E-value=0.025 Score=40.13 Aligned_cols=141 Identities=10% Similarity=0.037 Sum_probs=101.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 017414 151 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 230 (372)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (372)
+.-.|..++..++..+..... +..-+|-+|.-....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 345677888888887776642 4445555555444555666666666666543222 24566666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 231 AEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
....+-.++ .+.......+..+...|+.+...+++..+....+.++.....+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666664 455566777788889999999999999976667778889999999999999999999999999999986
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.09 E-value=0.0049 Score=42.33 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhC-----C----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchH
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-----P----FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 281 (372)
+...+..|...+...|++..|...|+.. + -.+....+..+..++.+.|+++.|...++++.++.|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4444556666677777777777666654 1 123456788888899999999999999999999999887665
Q ss_pred HHH
Q 017414 282 AIL 284 (372)
Q Consensus 282 ~~l 284 (372)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.07 E-value=0.0063 Score=58.59 Aligned_cols=154 Identities=15% Similarity=0.096 Sum_probs=90.3
Q ss_pred HHHhcCCHHHHHH-HHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHH
Q 017414 119 MYAKSGKIGKALQ-VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRR 197 (372)
Q Consensus 119 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 197 (372)
.....+++++|.+ ++..+. +......++..+.+.|.+++|+++.++ |. .- .......|+++.|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHHHHHH
Confidence 3445677777766 543332 011225566666777777777765421 11 11 222345678888877
Q ss_pred HHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 198 YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
+.+.+ .+...|..+.+.+.+.|+++.|.++|.+++. |..+...+...|+.+...++.+.+...+
T Consensus 674 ~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~~~~~a~~~~--- 737 (814)
T 3mkq_A 674 LLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------LESLFLLHSSFNNKEGLVTLAKDAETTG--- 737 (814)
T ss_dssp HHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHHHHHHHHHHHHHTT---
T ss_pred HHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------hhhhHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 65433 2566788888888888888888888888741 4445555555666666655555554432
Q ss_pred cchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 278 SGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 278 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
-+.....+|.+.|++++|.+++.++
T Consensus 738 --~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 --KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred --chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2233344556666777777666654
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.007 Score=51.55 Aligned_cols=60 Identities=7% Similarity=0.024 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 142 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
.+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|+++.
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444333333444444444444444432 343333334444444444444444444444
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.1 Score=39.31 Aligned_cols=105 Identities=11% Similarity=0.078 Sum_probs=71.5
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 017414 16 VAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGE 95 (372)
Q Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 95 (372)
.+...+.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 45567788888888887765 4567788888888888888888888887753 334555566677777766
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 017414 96 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 137 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 137 (372)
.+-+.....| . ++.....+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 6655555544 1 3444455566677777777775543
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.78 E-value=0.0087 Score=43.88 Aligned_cols=83 Identities=12% Similarity=-0.028 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC---chHHHHHHHHHhHHhcCCCc--CHHHHHHHHHHHHhcCCHHHH
Q 017414 157 GREALDMFSRMERARVKPNEITFIAILSACCHVG---LVELGRRYFNIMKSRYGIEP--KIEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a 231 (372)
...+.+.|.+..+.|. ++..+...+..++++++ +.+++..+++.+.+. . .| ....+..+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455566666555543 56666666666666666 566777777777754 2 23 345555666677788888888
Q ss_pred HHHHhhC-CCCC
Q 017414 232 EKLLRRM-PFEA 242 (372)
Q Consensus 232 ~~~~~~~-~~~~ 242 (372)
.+.++.+ .++|
T Consensus 91 ~~y~~~lL~ieP 102 (152)
T 1pc2_A 91 LKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHhcCC
Confidence 8877776 4455
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.65 E-value=0.015 Score=41.06 Aligned_cols=92 Identities=17% Similarity=0.059 Sum_probs=54.9
Q ss_pred ccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHH---HHHHHhhC-CCC-C--CHHHHHHHHHHHHHcCCh
Q 017414 188 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE---AEKLLRRM-PFE-A--NAAIWGSLLAASNIYGDV 260 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~ 260 (372)
.......+.+.|...... + .++..+-..+..++.+..+..+ ++.+++.+ ... | .......|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334455556666555432 3 3666666667777777666554 66677666 222 3 222333444577777777
Q ss_pred hHHHHHHHHHHHhCCCCcchH
Q 017414 261 ELGECALQHLIKLEPHNSGNY 281 (372)
Q Consensus 261 ~~a~~~~~~~~~~~p~~~~~~ 281 (372)
++|.+.++.+++..|.+..+.
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 777777777777777665443
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.65 E-value=0.0087 Score=48.95 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=67.1
Q ss_pred HHHHHHHHhhC-CCCCC---HHHHHHHHHHHHH-----cCChhHHHHHHHHHHHhCCCC-cchHHHHHHHHHHc-CCchh
Q 017414 228 LQEAEKLLRRM-PFEAN---AAIWGSLLAASNI-----YGDVELGECALQHLIKLEPHN-SGNYAILSNIYAIL-GRWNE 296 (372)
Q Consensus 228 ~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 296 (372)
...|...+++. .+.|+ ...|..+...|.. .|+.++|.+.|+++++++|+. ..++..++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666666666 55565 5577888888877 489999999999999999964 88888999988884 88999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 017414 297 SGKIRKVMRDMGVKKMPG 314 (372)
Q Consensus 297 a~~~~~~m~~~g~~~~~~ 314 (372)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999887766553343
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.64 E-value=0.014 Score=38.99 Aligned_cols=68 Identities=15% Similarity=-0.002 Sum_probs=42.6
Q ss_pred CcCHHHHHHHHHHHHhcCC---HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 017414 209 EPKIEQYGCMIDLLGRAGY---LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 276 (372)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 276 (372)
+.++..+..+..++...++ .++|..++++. ...| ++.....+...+...|++++|+..|+++.+..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455566666666654333 56777777666 3334 4455555666777777777777777777777765
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.61 E-value=0.44 Score=44.05 Aligned_cols=113 Identities=13% Similarity=0.020 Sum_probs=62.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEI----TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 231 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 231 (372)
+.+.|...+....... ..+.. ....+.......+...++...+...... ..+.....-.++.-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 6677777777765433 22222 2222333344444344555555554422 23333344444445567888888
Q ss_pred HHHHhhCCCCC-C-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 017414 232 EKLLRRMPFEA-N-AAIWGSLLAASNIYGDVELGECALQHLIK 272 (372)
Q Consensus 232 ~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (372)
...|+.++..+ + ..-.--+..++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888884332 2 22233344566677888888888887764
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.58 E-value=0.00017 Score=62.94 Aligned_cols=237 Identities=12% Similarity=0.091 Sum_probs=169.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 017414 8 LYKFWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 87 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 87 (372)
.+.+|+.|..+..+.+++.+|++.| ++..|+..|..++....+.|.+++-+.++....+..-.| ..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 3556888888999999998888877 444677788999999999999999999887665543233 333568889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc------------------------CCcch
Q 017414 88 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN------------------------KSVIT 143 (372)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 143 (372)
.++..+-++++ -.|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 99877654443 145665566788889999999988888876642 26679
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCC-CcCHHHHHHHHHHH
Q 017414 144 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGI-EPKIEQYGCMIDLL 222 (372)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~ 222 (372)
|..+-.+|...+.+.-|.-.--.+. +.|+ ....++..|...|.+++-+.+++... |+ ......++-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHH
Confidence 9999999999988877655444333 2222 23346778889999999888888877 33 34567777777777
Q ss_pred HhcCCHHHHHHHHhhC----CCC------CCHHHHHHHHHHHHHcCChhHHH
Q 017414 223 GRAGYLQEAEKLLRRM----PFE------ANAAIWGSLLAASNIYGDVELGE 264 (372)
Q Consensus 223 ~~~g~~~~a~~~~~~~----~~~------~~~~~~~~l~~~~~~~~~~~~a~ 264 (372)
++- ++++..+.++.. ++. -....|..++-.|....+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 665 566666666544 221 13456888888888888888664
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.24 Score=37.29 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=74.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 196 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 196 (372)
.+.....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.|.-.|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 44456667777777776655 3456777777777777777777777776542 222333344456666665
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 017414 197 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHL 270 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 270 (372)
.+-+....+ | + ++.-...+...|+++++.++|.+.+.-|.. .......|-.+.|.++.+.+
T Consensus 81 kla~iA~~~-g---~---~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E---D---FGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T---C---HHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c---c---HHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 555554432 2 1 334445566777777777777776532211 11122345556666665544
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.20 E-value=0.031 Score=38.19 Aligned_cols=66 Identities=12% Similarity=-0.018 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhC-------CCCcchHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 017414 242 ANAAIWGSLLAASNIYGDVELGECALQHLIKLE-------PHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 307 (372)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (372)
.+...+..+...+...|+++.|...++.+.+.. +..+.++..|+.++.+.|+++.|...+++....
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355667788899999999999999999998842 234568899999999999999999999988653
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.08 E-value=2.5e-07 Score=80.22 Aligned_cols=242 Identities=12% Similarity=0.096 Sum_probs=162.6
Q ss_pred ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 39 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
.+..|+.|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-..++...++..-+|. +=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHH
Confidence 4568999999999999999998877433 2444678899999999999999999988877643443 4467999
Q ss_pred HHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc--------------------CCCCCHHH
Q 017414 119 MYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA--------------------RVKPNEIT 178 (372)
Q Consensus 119 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~p~~~~ 178 (372)
+|++.+++.+-.+++. .||..-......-|...|.++.|.-+|..+-.- .-..+..|
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 9999999876554432 356656666777777777777776666543211 01234567
Q ss_pred HHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHH
Q 017414 179 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNI 256 (372)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~ 256 (372)
|.-+-.+|...+.+.-|...--.+.-. ++ ....++..|-..|.+++-+.+++.. +. +.....|+.|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh----ad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH----AD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC----SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc----HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 777777888777777665544333311 11 1224677778888888888888775 33 3567778888888887
Q ss_pred cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHH
Q 017414 257 YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 303 (372)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (372)
. ++++..+.++.... .-+-| -++++|....-|.++.=++..
T Consensus 276 Y-~PeKlmEHlklf~s-riNip----KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 276 F-KPQKMREHLELFWS-RVNIP----KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp S-CTTHHHHHHTTSSS-SSCCT----TTHHHHTTTTCHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHH-hccHH----HHHHHHHHHhhHHHHHHHHhc
Confidence 6 34444444433222 11122 377888888888888877664
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.00 E-value=0.11 Score=36.50 Aligned_cols=90 Identities=12% Similarity=-0.046 Sum_probs=56.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHH---HHHHHHHhHHhcCCCc--CHHHHHHHHHHHHh
Q 017414 150 GLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL---GRRYFNIMKSRYGIEP--KIEQYGCMIDLLGR 224 (372)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~ 224 (372)
.-........+.+.|.+....|. |+..+-..+..++.++.+... ++.+++.+... + .| .......|.-++.+
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHH
Confidence 33334445556666666655543 566666666667777766555 77788877743 2 23 23444556677888
Q ss_pred cCCHHHHHHHHhhC-CCCC
Q 017414 225 AGYLQEAEKLLRRM-PFEA 242 (372)
Q Consensus 225 ~g~~~~a~~~~~~~-~~~~ 242 (372)
.|++++|.+.++.+ ...|
T Consensus 87 lg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred hhhHHHHHHHHHHHHHhCC
Confidence 88888888888877 4445
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.82 E-value=0.32 Score=34.91 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 253 ASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
++.+.|++++|.++.+.+++..|.+
T Consensus 86 g~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 86 GCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 4445555555555555555555444
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.78 E-value=0.32 Score=34.58 Aligned_cols=83 Identities=10% Similarity=0.007 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhH
Q 017414 124 GKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 203 (372)
Q Consensus 124 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 203 (372)
|++......+-.+. .+....+..+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++.
T Consensus 75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33444444433332 2334455566777788888888888887544 246777777788888888888888888888887
Q ss_pred HhcCCC
Q 017414 204 SRYGIE 209 (372)
Q Consensus 204 ~~~~~~ 209 (372)
++ |++
T Consensus 153 ~k-G~k 157 (172)
T 1wy6_A 153 KK-GEK 157 (172)
T ss_dssp HT-TCH
T ss_pred Hh-hhH
Confidence 65 653
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.64 E-value=0.084 Score=38.29 Aligned_cols=60 Identities=13% Similarity=-0.022 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 017414 225 AGYLQEAEKLLRRM---PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 285 (372)
Q Consensus 225 ~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 285 (372)
.++.++|.++|+.+ ..+- ...|......-.++|+...|.+++.+++.+.|.........+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 36677777777766 2122 666777777777888888888888888888876554444333
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.29 E-value=0.25 Score=35.03 Aligned_cols=63 Identities=16% Similarity=0.029 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHhCCC-CcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 242 ANAAIWGSLLAASNIYGDV---ELGECALQHLIKLEPH-NSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
|+..+--.+..++.+..+. .+++.+++.+.+.+|. .......|..++.+.|+++.|.+..+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444444444444332 2444455555444442 2233444455555555555555555544
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.13 E-value=0.76 Score=46.13 Aligned_cols=163 Identities=10% Similarity=0.035 Sum_probs=95.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 017414 13 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVE 92 (372)
Q Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 92 (372)
..++..+...+..+.|.++...+.. ++..--.+..++...|++++|.+.|++.-. |+..+.... ....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 3466667777888777776665544 444446677888888899999888877532 222111000 0000
Q ss_pred HHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCc----chHHHHHHHHHhcCChhHHHH
Q 017414 93 LGEWIHNYIEQYG--LNTIVPLNNALIDMYAKSGKIGKALQVFENMK----NKSV----ITWTTMIAGLALHGLGREALD 162 (372)
Q Consensus 93 ~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~~~a~~ 162 (372)
. +..+.... ...-...|..++..+.+.|.++.+.++-.... ..+. ..|..+...+...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 11111111 11223456667777777777777776655332 1111 257778888888899999888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcccCchH
Q 017414 163 MFSRMERARVKPNEITFIAILSACCHVGLVE 193 (372)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 193 (372)
.+-.+.....+ ...+..|+...|..|..+
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 88777654332 345666666666555443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.11 Score=48.88 Aligned_cols=123 Identities=14% Similarity=0.106 Sum_probs=80.2
Q ss_pred HHHHHHHhcccCc-hHHHHHHHHHhHHhcCCCcCHHHH--HHHHHHHHhcCC-HHHHHHHHhhC---------CCCC-CH
Q 017414 179 FIAILSACCHVGL-VELGRRYFNIMKSRYGIEPKIEQY--GCMIDLLGRAGY-LQEAEKLLRRM---------PFEA-NA 244 (372)
Q Consensus 179 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~-~~~a~~~~~~~---------~~~~-~~ 244 (372)
...++..+...++ .+.|..+++++.++ .|....+ ..++..+...+. --+|.+++.+. ...+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 3455555555666 58899999998864 4443332 233333333322 22333333222 1111 11
Q ss_pred H----------HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHH
Q 017414 245 A----------IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 304 (372)
Q Consensus 245 ~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (372)
. ....=...|...|+++.|..+.+++...-|.+..+|..|..+|...|+|+.|+-.++.+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 11111334567899999999999999999999999999999999999999999999988
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.91 E-value=0.098 Score=42.84 Aligned_cols=90 Identities=13% Similarity=-0.005 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCC--CC---hhhHHHHHHHHHhC-----CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CChHH
Q 017414 25 LNNARALFELMTE--KN---VISWTTLIAGYAQM-----DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL-GAVEL 93 (372)
Q Consensus 25 ~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~ 93 (372)
...|...+++..+ |+ ...|..|...|.+. |+.++|.+.|++.++.+..-+..++......++.. ++.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4556666666654 43 45788899888884 89999999999998853212367777788888774 88999
Q ss_pred HHHHHHHHHHcCCC--CchhHHH
Q 017414 94 GEWIHNYIEQYGLN--TIVPLNN 114 (372)
Q Consensus 94 a~~~~~~~~~~~~~--~~~~~~~ 114 (372)
+.+.+++..+.... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 99999999887554 5444333
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.87 E-value=0.28 Score=35.63 Aligned_cols=100 Identities=7% Similarity=-0.061 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHhhC--CCCCCH-HHHHHHHH------HHHHcCChhHHHHHHHHHHHhCC
Q 017414 211 KIEQYGCMIDLLGRAGYL------QEAEKLLRRM--PFEANA-AIWGSLLA------ASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~------~~a~~~~~~~--~~~~~~-~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
|..+|-..+...-+.|+. ++..++|++. .++|+. ..|...+. .+...++.++|.++|+.+..+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 444555555555555555 5555666655 233321 11222111 22344899999999999988754
Q ss_pred CCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 276 HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 276 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
.=..+|......-.++|+...|.+++......+.+
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44567777777788999999999999988776554
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.41 E-value=0.13 Score=44.72 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHH-----hCCCccCCce
Q 017414 248 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR-----DMGVKKMPGC 315 (372)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~~ 315 (372)
..++.++...|+++++...++.+...+|.+...+..|+.++.+.|+..+|.+.|+.+. +.|+.|.|..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3456667778888888888888888888888888888888888888888888888774 3577776543
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.93 E-value=1.8 Score=41.93 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=7.8
Q ss_pred ccCchHHHHHHHHHhH
Q 017414 188 HVGLVELGRRYFNIMK 203 (372)
Q Consensus 188 ~~~~~~~a~~~~~~~~ 203 (372)
..|+.+.+..+.+.+.
T Consensus 536 ~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 536 NYGRQELADDLITKML 551 (963)
T ss_dssp TTTCGGGGHHHHHHHH
T ss_pred hCCChHHHHHHHHHHH
Confidence 3444455555554444
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.81 E-value=2.6 Score=35.35 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHH----HHHHhCCCCCCHHHHHHHHHHHH
Q 017414 11 FWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLF----RRMQVENVKPDEIAMLAALSACA 86 (372)
Q Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~l~~~~~ 86 (372)
.|.++..-|.+++++++|++++- .-...+.+.|+...|-++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34555555666666666666542 2333455667766554443 44455678888888777877776
Q ss_pred ccCChH-----HHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhH
Q 017414 87 QLGAVE-----LGEWIHNYIEQYG--LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 87 ~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (372)
....-+ -..+.+.+-.+.| ..-++.....+...|.+.+++.+|...|---.++++..+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 665321 1112222223333 233677788888999999999999888743222233566555544444332111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 160 ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 160 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
++...-.+++ -|...++...|..+++...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34455677777776665553
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.81 E-value=0.55 Score=31.32 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
+.-++.+-++.+...++.|++....+.+.+|.+.+++..|.++++-++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 456677788888888899999999999999999999999999999999765443 456666664
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.67 E-value=2.7 Score=35.00 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=78.7
Q ss_pred HHHHhCCCccHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHcCC--CCchhHHHHH
Q 017414 48 AGYAQMDQPNEAITL----FRRMQVENVKPDEIAMLAALSACAQLGAV-----ELGEWIHNYIEQYGL--NTIVPLNNAL 116 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l 116 (372)
..+.+.|+...|-++ .+...+.+++++......++..+.....- +-..+......+.|- .-++..+..+
T Consensus 61 ~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~ 140 (312)
T 2wpv_A 61 LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTI 140 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 345566776655443 44455567788887777777776554321 222233333333332 2366778888
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchH
Q 017414 117 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALH---GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 193 (372)
Q Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 193 (372)
...|.+.|++.+|...|-.-...+...+..++.-+... |...++ +...-.+++ -|...|+..
T Consensus 141 a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~ 205 (312)
T 2wpv_A 141 GSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNIS 205 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHH
T ss_pred HHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHH
Confidence 88888888888888877533222444554444443333 322221 111111222 344567888
Q ss_pred HHHHHHHHhHHh
Q 017414 194 LGRRYFNIMKSR 205 (372)
Q Consensus 194 ~a~~~~~~~~~~ 205 (372)
.|..+++...++
T Consensus 206 ~A~~~~~~f~~~ 217 (312)
T 2wpv_A 206 FAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887766543
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.48 E-value=0.6 Score=34.54 Aligned_cols=29 Identities=17% Similarity=0.112 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 017414 211 KIEQYGCMIDLLGRAGYLQEAEKLLRRMP 239 (372)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 239 (372)
+...-..+..+|.+.+++++|+.+++.++
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 34444556777777788888888777774
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.33 E-value=0.41 Score=35.42 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=12.4
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 017414 250 LLAASNIYGDVELGECALQHL 270 (372)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~ 270 (372)
+..++...+++++|+.+++.+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHCCHHHHHHHHhcC
Confidence 445566666666666665544
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.05 E-value=6.9 Score=37.96 Aligned_cols=250 Identities=11% Similarity=-0.004 Sum_probs=135.3
Q ss_pred HHHhcCCHHHHHHHHhccCC----CChh--hHHHHHHHHHhCCCccHHHHHHHHHHhCCC--C-----CCHHHHHHHHHH
Q 017414 18 GYAKVGDLNNARALFELMTE----KNVI--SWTTLIAGYAQMDQPNEAITLFRRMQVENV--K-----PDEIAMLAALSA 84 (372)
Q Consensus 18 ~~~~~~~~~~A~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~-----p~~~~~~~l~~~ 84 (372)
+....|+.++++.+++.... .+.. .=..+.-+.+..|..+++..++...+...- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 35567888888888877654 1222 223344556667766678887777654321 0 111112223233
Q ss_pred HHccCC-hHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcccC-Ccch--HHHHHHHHHhcCChh
Q 017414 85 CAQLGA-VELGEWIHNYIEQYGLNTIV--PLNNALIDMYAKSGKIGKALQVFENMKNK-SVIT--WTTMIAGLALHGLGR 158 (372)
Q Consensus 85 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~l~~~~~~~~~~~ 158 (372)
.+-.|. -+++...+..+.... .+.. ..-..|...+...|+-+....++..+.+. +... ..++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 333343 234555555555432 1111 11223445566778877777777765432 2222 233334455789999
Q ss_pred HHHHHHHHHHHcCCCCCHH--HHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 159 EALDMFSRMERARVKPNEI--TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
.+..+++.+.... .|... ...++.-+|+..|+.....+++..+.+ ....++.....+.-++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 9998888887641 22221 122445678999999888889999985 333344444444455555677666777776
Q ss_pred hCCCCCCHHHHHH--HHHHHHHcCCh-hHHHHHHHHHH
Q 017414 237 RMPFEANAAIWGS--LLAASNIYGDV-ELGECALQHLI 271 (372)
Q Consensus 237 ~~~~~~~~~~~~~--l~~~~~~~~~~-~~a~~~~~~~~ 271 (372)
.+....|..+-.. +.-+....|.. .++...+..+.
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 5521223333222 33333444443 45666666664
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.04 E-value=8.2 Score=38.79 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC----C----------------------cchHHHHHHHHHhcCChhHHHHHHHHH
Q 017414 114 NALIDMYAKSGKIGKALQVFENMKNK----S----------------------VITWTTMIAGLALHGLGREALDMFSRM 167 (372)
Q Consensus 114 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 167 (372)
-.++.+|...|++++|.++|++.... + ..=|..++..+-+.+.++.+.++-...
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44667777888888888888765421 0 012455666666777777777666655
Q ss_pred HHcCCCCCH----HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 017414 168 ERARVKPNE----ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 168 ~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 229 (372)
.+....-+. ..|..+.+.+...|++++|...+-.+... ..-......|+...|..|..+
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCChh
Confidence 543211111 14566667777777777777776666532 223344555665555555433
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.55 E-value=0.8 Score=43.24 Aligned_cols=124 Identities=14% Similarity=0.088 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHhcccCCcch--H--HHHHHHHHhcC-ChhHHHHHHHHHHHc------CCCC-CH----
Q 017414 114 NALIDMYAKSGK-IGKALQVFENMKNKSVIT--W--TTMIAGLALHG-LGREALDMFSRMERA------RVKP-NE---- 176 (372)
Q Consensus 114 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~--~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~p-~~---- 176 (372)
..|+..+...|+ .+.|..+|+++.+.++.. + .+++..+...+ +--+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 455666666666 577888888877544421 1 12222222222 122355555444321 1111 11
Q ss_pred ------HHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 017414 177 ------ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP 239 (372)
Q Consensus 177 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 239 (372)
.....=.+-|...|+++-|..+-++... -.+.+-.+|..|..+|...|+++.|+-.+..+|
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1112223445678999999999999884 234456899999999999999999999998885
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.97 E-value=1.2 Score=38.54 Aligned_cols=105 Identities=9% Similarity=0.014 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHH---hcCCHHHHHHHHhccCC-------CCh------------------hhHHHHHHHHHhCCCccHH
Q 017414 8 LYKFWNTMVAGYA---KVGDLNNARALFELMTE-------KNV------------------ISWTTLIAGYAQMDQPNEA 59 (372)
Q Consensus 8 ~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~-------~~~------------------~~~~~l~~~~~~~~~~~~A 59 (372)
|...|..++.... ..|+.+.|...+..... ++. .+...++..+...|++.+|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4444555554332 35788887777766543 111 0123344555666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCchhHH
Q 017414 60 ITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ-----YGLNTIVPLN 113 (372)
Q Consensus 60 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 113 (372)
+..+..+.... +.+...|..++.++.+.|+..+|.+.|+...+ .|+.|+..+-
T Consensus 191 ~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 191 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 76666666542 34666677777777777777777777666542 4666665543
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.93 E-value=6.2 Score=34.81 Aligned_cols=185 Identities=9% Similarity=0.062 Sum_probs=119.2
Q ss_pred CCccHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCchh--HHHHHHHHHHhcCC
Q 017414 54 DQPNEAITLFRRMQVE-----NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIVP--LNNALIDMYAKSGK 125 (372)
Q Consensus 54 ~~~~~A~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~~g~ 125 (372)
|+++.|++.+..+.+. ....+......++..|...++++...+.+..+.+. |..+... ..+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 7788998888666542 34456777888999999999999998888776644 3222211 12222333333333
Q ss_pred HH--HHHHHHHhcccC--C---c-----chHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC---HHHHHHHHHHhcc
Q 017414 126 IG--KALQVFENMKNK--S---V-----ITWTTMIAGLALHGLGREALDMFSRMERA--RVKPN---EITFIAILSACCH 188 (372)
Q Consensus 126 ~~--~A~~~~~~~~~~--~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~ 188 (372)
.+ .-..+.+.+..- + . .....|...|...|++.+|.+++..+... |..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 233344433321 1 1 23456788899999999999999998753 22222 2456667788999
Q ss_pred cCchHHHHHHHHHhHHhc-CCCcC----HHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 189 VGLVELGRRYFNIMKSRY-GIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
.+++.+|..++.++.... ...++ ...+...+..+...+++.+|.+.|.++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999875321 12222 244566777888889999998887765
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.45 E-value=0.93 Score=32.05 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 017414 156 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 220 (372)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 220 (372)
+.-+..+-++.+...++.|++......+.+|.+.+++..|.++|+-++.+.+. ...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHH
Confidence 44566777788888889999999999999999999999999999999976543 3556766664
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.35 E-value=1.7 Score=29.06 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 017414 58 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 118 (372)
Q Consensus 58 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 118 (372)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++..- .+...+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455666666667778888888888888888888888888888777542 333455655543
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.28 E-value=3.6 Score=33.19 Aligned_cols=127 Identities=14% Similarity=0.077 Sum_probs=71.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 017414 149 AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (372)
....+.|..++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+ +.|+...-..+.+...++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 34556778888888777777663 44666666777888888888888888877773 244432222121222121
Q ss_pred HHHHH-HHhhC--C--CCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHhCCCCcchHH
Q 017414 229 QEAEK-LLRRM--P--FEANAAIWGSLLAASN--IYGDVELGECALQHLIKLEPHNSGNYA 282 (372)
Q Consensus 229 ~~a~~-~~~~~--~--~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~ 282 (372)
+.... +|.-- | +.....-...++.+.. ..|+.+.|..+-..+.+.-|..+...+
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 22222 22211 1 1112223344444443 458888888888888887776655333
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.64 E-value=3 Score=29.51 Aligned_cols=72 Identities=13% Similarity=0.019 Sum_probs=47.6
Q ss_pred CcCHHHHHHHHHHHHhcCCH---HHHHHHHhhC-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcch
Q 017414 209 EPKIEQYGCMIDLLGRAGYL---QEAEKLLRRM-PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 280 (372)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 280 (372)
.|++.+--.+..++.+.... .+++.+++.+ ...| ....+-.|.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 45666666666666666554 3566666666 2234 23344555668888888888888888888888877643
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.31 E-value=4.6 Score=28.97 Aligned_cols=66 Identities=15% Similarity=0.025 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHhCCCC-cchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 241 EANAAIWGSLLAASNIYGDV---ELGECALQHLIKLEPHN-SGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
.|+..+-..+..++.+..+. .+++.+++.+.+..|.. ......|..++.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35555555555555555433 35556666666555532 23445556666666666666666666544
No 259
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=89.18 E-value=6 Score=30.09 Aligned_cols=179 Identities=9% Similarity=0.013 Sum_probs=89.2
Q ss_pred HHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 017414 30 ALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI 109 (372)
Q Consensus 30 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 109 (372)
.+++.+..+|.......+..+.+.+.... ...+.++.. .++...-...+.++...++.+....+. .+.. .++
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~ 89 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DED 89 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCC
Confidence 34444455555555555555555554333 333333332 345445445555555555543332222 2222 345
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 017414 110 VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 189 (372)
Q Consensus 110 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 189 (372)
..+-...+.++.+.|+.+....+.+.+..++..+-...+.++.+.+..+ +...+..+.. .++...-...+.++.+.
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 5555566666666666544444455555566656666666666666543 4444444443 24555555555566555
Q ss_pred CchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhc
Q 017414 190 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 225 (372)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 225 (372)
|.. .+...+..+... ++...-...+.++.+.
T Consensus 166 ~~~-~~~~~L~~~l~d----~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 166 GGE-RVRAAMEKLAET----GTGFARKVAVNYLETH 196 (201)
T ss_dssp CSH-HHHHHHHHHHHH----CCHHHHHHHHHHHHHC
T ss_pred Cch-hHHHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence 553 344555555432 3444444445554443
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.92 E-value=9.4 Score=32.00 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHh
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMF----SRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
.+|.++..=|.+.+++++|++++..- ...+.+.|+...|-++. +-..+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34556666788888888888876532 23455666665554443 4455567788887777777776
Q ss_pred cccCchHH-HHHHHHHhHH---hcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 187 CHVGLVEL-GRRYFNIMKS---RYGI--EPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 187 ~~~~~~~~-a~~~~~~~~~---~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
.....-+- =..+.+.+.+ +.|- .=++.....+...|.+.+++.+|...|-
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 65443111 1222222221 1121 2256677788888999999999888774
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.31 E-value=1.6 Score=28.89 Aligned_cols=59 Identities=12% Similarity=-0.051 Sum_probs=34.1
Q ss_pred HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHH
Q 017414 48 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN 113 (372)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 113 (372)
..+...|++++|..+.+.. ..||...|..|. -.+.|-.+++...+..+...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3455677777776655433 367766665442 346666666666666666655 4444333
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.26 E-value=1.8 Score=28.75 Aligned_cols=82 Identities=16% Similarity=0.041 Sum_probs=44.0
Q ss_pred CHHHHHHHHhccCC-CChhhHHHHH--HHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 017414 24 DLNNARALFELMTE-KNVISWTTLI--AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNY 100 (372)
Q Consensus 24 ~~~~A~~~~~~~~~-~~~~~~~~l~--~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 100 (372)
..++|..+-+.+.. ++ .-.-.+| ..+...|++++|..+.+.. ..||...|..|. -.+.|-.+++...+..
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence 44555555444432 22 2222233 3456677777777665544 367777765443 3456666666666666
Q ss_pred HHHcCCCCchhHH
Q 017414 101 IEQYGLNTIVPLN 113 (372)
Q Consensus 101 ~~~~~~~~~~~~~ 113 (372)
+...| .|....|
T Consensus 95 la~sg-~p~~q~F 106 (116)
T 2p58_C 95 LARSQ-DPRIQTF 106 (116)
T ss_dssp HTTCC-CHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 66555 4444333
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.80 E-value=4.4 Score=26.89 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+..--||...|.+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777766552 22222233455677788888888888777777777766644 467777777777766666
Q ss_pred cCCCCCHHHHH
Q 017414 170 ARVKPNEITFI 180 (372)
Q Consensus 170 ~~~~p~~~~~~ 180 (372)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 55 44444443
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.34 E-value=4.8 Score=26.78 Aligned_cols=86 Identities=19% Similarity=0.267 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 017414 90 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER 169 (372)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 169 (372)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+..--||...|.+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777776552 22222233455677788888888888877778777766644 466777777777766665
Q ss_pred cCCCCCHHHHH
Q 017414 170 ARVKPNEITFI 180 (372)
Q Consensus 170 ~~~~p~~~~~~ 180 (372)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44444443
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.93 E-value=8.8 Score=29.41 Aligned_cols=187 Identities=11% Similarity=0.033 Sum_probs=114.8
Q ss_pred CCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 017414 23 GDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE 102 (372)
Q Consensus 23 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (372)
++.+....+.+.+..++...-...+..+.+.|.. .+...+..+.. .++...-...+.++.+.++.+....+ ..+.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l 90 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPL-IKAL 90 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHH-HHHT
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHH-HHHH
Confidence 3444455555666667777777777777777764 34444445544 35666666777777777765433333 3333
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 017414 103 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI 182 (372)
Q Consensus 103 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 182 (372)
. .++..+-...+.++.+.|+.+....+.+.+..++..+-...+.++.+.|..+ +...+..+.. .++...-...
T Consensus 91 ~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 91 K---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred c---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 2 4666677777888888887665555566566677777777788888887754 4555555543 4566666666
Q ss_pred HHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcC
Q 017414 183 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 226 (372)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 226 (372)
+.++.+.+. ..+...+..+.+. ++...-...+.++.+.+
T Consensus 164 ~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 164 ADALGEIGG-ERVRAAMEKLAET----GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHC--
T ss_pred HHHHHHhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHhcC
Confidence 677777666 4555566666543 45555555566655544
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.80 E-value=4.6 Score=28.60 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 017414 59 AITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 117 (372)
Q Consensus 59 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 117 (372)
..+-++.+....+.|++......+++|.+.+|+..|.++++-++..- .+...+|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 34444455555566777777777777777777777777776666442 23344454444
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.96 E-value=18 Score=31.19 Aligned_cols=163 Identities=14% Similarity=0.052 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC---chhHHHHHHHHHHhcC-CHHHHHHHHHhccc---CCcchH---
Q 017414 76 IAMLAALSACAQLGAVELGEWIHNYIEQY-GLNT---IVPLNNALIDMYAKSG-KIGKALQVFENMKN---KSVITW--- 144 (372)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~--- 144 (372)
.....|...|.+.|+.++...++.....- +..+ .......|++.+.... ..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888877765432 1111 2344566777776643 33333333333321 122233
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhcccCchHHHHHHHHHhHHhc-CCCcCHHHH
Q 017414 145 ---TTMIAGLALHGLGREALDMFSRMERARVKPN-----EITFIAILSACCHVGLVELGRRYFNIMKSRY-GIEPKIEQY 215 (372)
Q Consensus 145 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 215 (372)
..++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+....... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2567788888888888888888776311112 1234455667778888888888887775421 122333322
Q ss_pred HH----HHHHHH-hcCCHHHHHHHHhhC
Q 017414 216 GC----MIDLLG-RAGYLQEAEKLLRRM 238 (372)
Q Consensus 216 ~~----li~~~~-~~g~~~~a~~~~~~~ 238 (372)
.. -...+. ..+++..|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 21 123445 678888888777654
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.50 E-value=18 Score=30.02 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHh
Q 017414 111 PLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDM----FSRMERARVKPNEITFIAILSAC 186 (372)
Q Consensus 111 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~~l~~~~ 186 (372)
..|.++..=|.+.+++++|++++..- ...+.+.|+...|-++ ++-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45566777788888888888886542 2445666776665554 45555668888888888888776
Q ss_pred cccCchH-HHHHHHHHhHH---hcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 017414 187 CHVGLVE-LGRRYFNIMKS---RYGI--EPKIEQYGCMIDLLGRAGYLQEAEKLLR 236 (372)
Q Consensus 187 ~~~~~~~-~a~~~~~~~~~---~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~ 236 (372)
.....-+ .=.++.+.+.+ +.|- .-++..+..+...|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5532111 11233333331 1121 1266778889999999999999988764
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.85 E-value=14 Score=28.29 Aligned_cols=54 Identities=9% Similarity=0.083 Sum_probs=38.0
Q ss_pred CChhHHHHHHHHHHH--hCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc
Q 017414 258 GDVELGECALQHLIK--LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311 (372)
Q Consensus 258 ~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 311 (372)
++......+|..+.. ++-.....|...+..+...|++++|.++|+.=..++-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345677778877776 445566677788888888888888888887665555443
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.18 E-value=12 Score=32.74 Aligned_cols=94 Identities=10% Similarity=-0.083 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC------CcchHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHH--HH
Q 017414 112 LNNALIDMYAKSGKIGKALQVFENMKNK------SVITWTTMIAGLALHGLGREALDMFSRMERA---RVKPNEIT--FI 180 (372)
Q Consensus 112 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~--~~ 180 (372)
+...++..|.+.|++++|.+.|.++... -...+-..+..+...+++..+...+.+.... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566778888888888888888777631 1245666777777778888888777776542 22232221 11
Q ss_pred HHHHHhcccCchHHHHHHHHHhHHh
Q 017414 181 AILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 181 ~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1222344567777777777666654
No 271
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.06 E-value=26 Score=30.82 Aligned_cols=144 Identities=10% Similarity=0.099 Sum_probs=74.3
Q ss_pred CCHHHHHHHHhccCC-----C----ChhhHHHHHHHHHhCCCccHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----cc
Q 017414 23 GDLNNARALFELMTE-----K----NVISWTTLIAGYAQMDQPNEAITLFRRMQVE-NVKPDEIAMLAALSACA----QL 88 (372)
Q Consensus 23 ~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~----~~ 88 (372)
|+++.|++.+-.+.+ . .......++..|...|+++...+.+..+.+. |..+ .....+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 566777666544432 1 2334666777777777777776666555433 2222 22223333222 22
Q ss_pred CChHHHHH--HHHHHHH--cC-CCC---chhHHHHHHHHHHhcCCHHHHHHHHHhccc----CC-----cchHHHHHHHH
Q 017414 89 GAVELGEW--IHNYIEQ--YG-LNT---IVPLNNALIDMYAKSGKIGKALQVFENMKN----KS-----VITWTTMIAGL 151 (372)
Q Consensus 89 ~~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~ 151 (372)
...+.... +.+.+.. .| +-. .......|...|...|++.+|..++..+.. .+ +..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22222111 1111100 01 001 122335567777777888888777776642 11 23555666777
Q ss_pred HhcCChhHHHHHHHHHH
Q 017414 152 ALHGLGREALDMFSRME 168 (372)
Q Consensus 152 ~~~~~~~~a~~~~~~~~ 168 (372)
...+++..|..++.++.
T Consensus 188 l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77778877777777654
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.77 E-value=4 Score=32.94 Aligned_cols=58 Identities=29% Similarity=0.277 Sum_probs=46.7
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC
Q 017414 220 DLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 277 (372)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 277 (372)
..+.+.|.+++|+.....- ..+| |...-..|+..++-.|++++|.+-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 4566889999998877655 4345 77777888889999999999999999999999853
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.44 E-value=25 Score=30.28 Aligned_cols=281 Identities=9% Similarity=0.005 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCC--------CChhhHHHHHHHHHhC-CCccHHHHHHHHHHhCCCCCCHHHH--
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTE--------KNVISWTTLIAGYAQM-DQPNEAITLFRRMQVENVKPDEIAM-- 78 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~~-- 78 (372)
.....+...|.+.|+.++...++..... .....-..++..+... +..+.-.++..+..+.. .-...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4566789999999999999999988775 1334566778777765 33444444444444321 1111122
Q ss_pred ----HHHHHHHHccCChHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHhccc------CCcch
Q 017414 79 ----LAALSACAQLGAVELGEWIHNYIEQYGLNTI-----VPLNNALIDMYAKSGKIGKALQVFENMKN------KSVIT 143 (372)
Q Consensus 79 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~ 143 (372)
..++..|...|++.+|..++..+.+.--..| ..++..-+..|...|++.++...+..... +++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2577889999999999998888876411212 34455567788899999999888876642 22221
Q ss_pred H----HHHHHHHH-hcCChhHHHHHHHHHHHc-C-C-CC---CHHHHHHHHHHhcccCchHHHHHHH-HHhHHhcCCCcC
Q 017414 144 W----TTMIAGLA-LHGLGREALDMFSRMERA-R-V-KP---NEITFIAILSACCHVGLVELGRRYF-NIMKSRYGIEPK 211 (372)
Q Consensus 144 ~----~~l~~~~~-~~~~~~~a~~~~~~~~~~-~-~-~p---~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~ 211 (372)
. ..-.-.+. ..++|..|...|-+..+. . . .| +...|..+..... .. ..+...++ ......+ ..|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~-~~-r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML-GQ-SDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-TC-GGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc-CC-HHHHHHHhcccccccc-CCcc
Confidence 1 11122355 688999998887765431 1 0 11 1223433333222 22 22222222 1222122 3455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH------hCCCCcchHHH
Q 017414 212 IEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIK------LEPHNSGNYAI 283 (372)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~ 283 (372)
...+..++.+| ..+++.+...+++.. .+..|......+ ..+++.+.. ..|-....+..
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-------------~~L~~~Ir~~~L~~i~~pYsrIsl~~ 321 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-------------GTLYDTMLEQNLCRIIEPYSRVQVAH 321 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-------------HHHHHHHHHHHHHHHHTTCSEEEHHH
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-------------HHHHHHHHHHHHHHHhHhhceeeHHH
Confidence 56666666665 566887777777776 334455432111 112222211 45666667777
Q ss_pred HHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 284 LSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
+...+.- ..+++...+-+|...|.-
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 7766643 678999999999877654
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.24 E-value=7.8 Score=33.99 Aligned_cols=94 Identities=9% Similarity=-0.119 Sum_probs=61.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCcchHHHH--
Q 017414 77 AMLAALSACAQLGAVELGEWIHNYIEQYG--LNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTM-- 147 (372)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-- 147 (372)
++..+...+.+.|+++.|.+.+.++.... ...-...+-.++..+...+++..+...+.+... ++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55567777888888888888888877642 233356667778888888888888887777642 222221111
Q ss_pred --HHHHHhcCChhHHHHHHHHHHHc
Q 017414 148 --IAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 148 --~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
+-.+...+++..|-+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 12234568888888888776553
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.58 E-value=22 Score=27.26 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHH
Q 017414 91 VELGEWIHNYIEQYGLNTI-VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMI 148 (372)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 148 (372)
......+|..|...|+-.. ...|......+...|++.+|.++|+.-.+........|.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 4455555555555443322 334445555555555555555555555444444444333
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.86 E-value=45 Score=32.77 Aligned_cols=127 Identities=10% Similarity=-0.008 Sum_probs=72.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 017414 15 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELG 94 (372)
Q Consensus 15 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 94 (372)
++..+...|..+-|.++...+.. ++..-..+..+|...|++++|..+|++.- .|+..+..... .....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~----------~~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VLREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCG----------GGHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccccc----------chhhh
Confidence 67778888999888887777665 44444578899999999999999998764 23322110000 00001
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCc----chHHHHHHHHHhcC
Q 017414 95 EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK----NKSV----ITWTTMIAGLALHG 155 (372)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~ 155 (372)
..++... +. .......|..++..+.+.+-++-+.++-+... ..|. ..|+.+..+.+..|
T Consensus 884 ~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1111100 00 01123366777777777777777666555433 2222 25566666655443
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.25 E-value=23 Score=26.93 Aligned_cols=185 Identities=12% Similarity=0.021 Sum_probs=105.2
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 017414 57 NEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENM 136 (372)
Q Consensus 57 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 136 (372)
.+++..+..... .++...-...+..+.+.++.+....+. .+.. .++..+-...+.++.+.|..+....+.+.+
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 90 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIKAL 90 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 444444444443 356666666667777777643333333 3333 346666666777777777765555556666
Q ss_pred ccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHH
Q 017414 137 KNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG 216 (372)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 216 (372)
..++..+-...+.++.+.+..+ +...+.++.. .++...-...+.++.+.|..+ +...+..+.. .++...-.
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~ 161 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQ 161 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHH
Confidence 6677777777778888887754 4444444443 456655556666666666644 3444444442 35666666
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 017414 217 CMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 258 (372)
Q Consensus 217 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (372)
..+.++.+.+.. ++...+.++-..++..+-...+.++...+
T Consensus 162 ~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 162 SAADALGEIGGE-RVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHCSH-HHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCch-hHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 677777777763 44444444411355555555555555443
No 278
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.19 E-value=21 Score=35.02 Aligned_cols=104 Identities=3% Similarity=-0.222 Sum_probs=62.2
Q ss_pred HHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCC-----------------
Q 017414 182 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEA----------------- 242 (372)
Q Consensus 182 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~----------------- 242 (372)
++..|...|..+-|.++.. ..+.++..-..+.++|...|++++|.++|++. ++..
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 4445555566555443222 23335444456778888999999999999887 2211
Q ss_pred ------CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-hCCCCcc----hHHHHHHHHHHc
Q 017414 243 ------NAAIWGSLLAASNIYGDVELGECALQHLIK-LEPHNSG----NYAILSNIYAIL 291 (372)
Q Consensus 243 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~----~~~~l~~~~~~~ 291 (372)
....|..++..+-..+-++.+.++.+.+++ ..++++. .|..+.++.+..
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 112456677777777888888888887776 3344443 344444444443
No 279
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=71.11 E-value=38 Score=27.11 Aligned_cols=226 Identities=13% Similarity=-0.005 Sum_probs=113.1
Q ss_pred HhccCCCChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh----HHHHHHHHHHHHcCCC
Q 017414 32 FELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV----ELGEWIHNYIEQYGLN 107 (372)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~ 107 (372)
+..+..++...-...+..+.+.|. ..+...+..+.. .++...-...+.++.+.+.. .....++...... .
T Consensus 29 ~~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d 102 (280)
T 1oyz_A 29 FRLLDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--D 102 (280)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--C
T ss_pred HHHHHcCCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--C
Confidence 333445666555555666666553 345555555554 34555555566666666632 2222233221112 3
Q ss_pred CchhHHHHHHHHHHhcCC-----HHHHHHHHHh-cccCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 017414 108 TIVPLNNALIDMYAKSGK-----IGKALQVFEN-MKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA 181 (372)
Q Consensus 108 ~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 181 (372)
++..+-...+.++...|. ...+...+.. +..++..+-...+.++...|..+ +...+..+.. .++...-..
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~ 178 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNW 178 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHH
Confidence 455555555666655541 2344444433 44566666666677777776643 4444444443 345444444
Q ss_pred HHHHhcccC-chHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 017414 182 ILSACCHVG-LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDV 260 (372)
Q Consensus 182 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 260 (372)
.+.++...| ....+...+..+.. .++..+-...+.++.+.|.....-.+...+. .++ +-...+.++...|+.
T Consensus 179 a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~~ 251 (280)
T 1oyz_A 179 AAFAININKYDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGDK 251 (280)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCCG
T ss_pred HHHHHHhhccCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCch
Confidence 444444443 12344444444442 3456566666777777775443333444433 233 334456667777773
Q ss_pred hHHHHHHHHHHHhCC
Q 017414 261 ELGECALQHLIKLEP 275 (372)
Q Consensus 261 ~~a~~~~~~~~~~~p 275 (372)
.+...+..+.+..+
T Consensus 252 -~~~~~L~~~l~~~~ 265 (280)
T 1oyz_A 252 -TLLPVLDTMLYKFD 265 (280)
T ss_dssp -GGHHHHHHHHTTSS
T ss_pred -hhhHHHHHHHhcCC
Confidence 55566666655443
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.19 E-value=28 Score=25.24 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=33.4
Q ss_pred HHHHHHHHHH--hCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc
Q 017414 263 GECALQHLIK--LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311 (372)
Q Consensus 263 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 311 (372)
...+|..+.. ++-..+..|...+..+...|++++|.++|+.=..++-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6677777766 444556677777777777788888877777665555443
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=69.93 E-value=19 Score=25.31 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCc---chHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCH
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGL--GREALDMFSRMERARVKPNE 176 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~ 176 (372)
...++.-|...|+.++|.+.++++..|.. .+...+..++-+.+. .+.+.+++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35577778888888888888888875532 234444445554432 35566777777766654433
No 282
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=69.40 E-value=1.6 Score=28.14 Aligned_cols=30 Identities=10% Similarity=0.013 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHHHHHHHHHcCcccccccc
Q 017414 334 HPDFDRLYQILCKINGQMKFAEHLQNEFSG 363 (372)
Q Consensus 334 ~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~ 363 (372)
.++..++++.+++..+.++..|+.||.+.+
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 456788999999999999999999998754
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=67.05 E-value=35 Score=25.12 Aligned_cols=49 Identities=8% Similarity=-0.036 Sum_probs=31.5
Q ss_pred HHHHHHHHHH--hCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc
Q 017414 263 GECALQHLIK--LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 311 (372)
Q Consensus 263 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 311 (372)
...+|..+.. ++...+..|...+..+...|++.+|.++|+.=..++-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 5556666665 334455667777777777777777777777655555443
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=66.56 E-value=23 Score=28.03 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=42.9
Q ss_pred HHHHHHhCCCccHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 017414 46 LIAGYAQMDQPNEAITLFRRMQVE--NVKP----DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDM 119 (372)
Q Consensus 46 l~~~~~~~~~~~~A~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (372)
-++.+....++++|.++.++..+. +.++ +.......+..-.....-..+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 456677788888888887766542 2221 111112222222222222233333333322 3334444455666
Q ss_pred HHhcCCHHHHHHHHHhc
Q 017414 120 YAKSGKIGKALQVFENM 136 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~ 136 (372)
+.+.|+-++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 67777777777766543
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.46 E-value=40 Score=24.47 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHH
Q 017414 94 GEWIHNYIEQYGLNTI-VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIA 149 (372)
Q Consensus 94 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 149 (372)
...+|..|...|+-.. ...|......+...|++.+|.++|+.-.+........|..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 140 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQ 140 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 4555555555544332 3445555555556666666666666555554444444433
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=62.90 E-value=18 Score=26.36 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCc---chHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCH
Q 017414 113 NNALIDMYAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGL--GREALDMFSRMERARVKPNE 176 (372)
Q Consensus 113 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~ 176 (372)
...++.-|...|+.++|.+.++++..|.. .+..++..++-+.+. .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35677788888888888888888876532 234444445554322 44566677777666654433
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.34 E-value=96 Score=27.83 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcccCCc-chHH-------HHHHHHHhcCChhHHHHHHHHHHHc
Q 017414 110 VPLNNALIDMYAKSGKIGKALQVFENMKNKSV-ITWT-------TMIAGLALHGLGREALDMFSRMERA 170 (372)
Q Consensus 110 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-------~l~~~~~~~~~~~~a~~~~~~~~~~ 170 (372)
..++|.+++.|...+.++.|..+..+..-|.. ..-+ -+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45667778888888888888888887764422 1111 1344556677888888887776654
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.45 E-value=32 Score=26.85 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHH--hCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 017414 261 ELGECALQHLIK--LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 310 (372)
Q Consensus 261 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 310 (372)
+....+|..+.. ++-.....|......+...|++.+|.++|+.=..++-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 455667777766 44455667777777777778888887777765555444
No 289
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=57.73 E-value=56 Score=24.35 Aligned_cols=110 Identities=9% Similarity=-0.030 Sum_probs=59.3
Q ss_pred HhcCCHHHHHHHHhccCCCChhhHHHHHHH-HHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 017414 20 AKVGDLNNARALFELMTEKNVISWTTLIAG-YAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIH 98 (372)
Q Consensus 20 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 98 (372)
.+-.+++.+.-+-.-+.. +..-|..|+.. +.-+|.+.+++-++...- ..+..-|..| ++-+.+++..|...+
T Consensus 13 ~kY~dYdt~~fLsa~L~~-~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~L--Cy~klKdYkkA~~~l 85 (242)
T 3kae_A 13 IRYRDYETAIFLAACLLP-CKPEYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYESL--CYKKKKDYKKAIKSL 85 (242)
T ss_dssp HHTTCHHHHHHHHHHHC-----CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHHH--HHHHTTCHHHHHHHH
T ss_pred hhcccccHHHHHHHHHcc-CChHHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 345566655544333332 22244444432 334677777766553221 1222233322 455667777777777
Q ss_pred HHHHHcCCCC----------------c-hhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 017414 99 NYIEQYGLNT----------------I-VPLNNALIDMYAKSGKIGKALQVFENM 136 (372)
Q Consensus 99 ~~~~~~~~~~----------------~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 136 (372)
+.+....+.. | ...++.+...+...|+.++|+..|..-
T Consensus 86 e~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 86 ESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 7777443331 1 234677778888888888888877654
No 290
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.91 E-value=56 Score=24.06 Aligned_cols=53 Identities=8% Similarity=0.047 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 017414 57 NEAITLFRRMQVENVKPD-EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI 109 (372)
Q Consensus 57 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 109 (372)
+.+.++|..|...|+--. ...|......+...|++.+|.++|..-++.+-.|.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 335566666666655443 33455566666666777777777776666665554
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.25 E-value=46 Score=26.26 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=19.9
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 017414 209 EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
.++.......+..+.+.|+-++|.++|-+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 344555555667777788888887777554
No 292
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.34 E-value=75 Score=25.04 Aligned_cols=115 Identities=13% Similarity=0.029 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCChh---hHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcc
Q 017414 14 TMVAGYAKVGDLNNARALFELMTEKNVI---SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA--MLAALSACAQL 88 (372)
Q Consensus 14 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~ 88 (372)
+.+...++.|+++.+..+++.-...+.. .-.+.+...+..|+.+- ++.+.+.|..++... -.+.+...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 4455667778888777777764432211 11223444455566543 333444444433210 01222233344
Q ss_pred CChHHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHhc
Q 017414 89 GAVELGEWIHNYIEQYGLNTIVPL--NNALIDMYAKSGKIGKALQVFENM 136 (372)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 136 (372)
|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-
T Consensus 83 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 128 (285)
T 1wdy_A 83 GSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128 (285)
T ss_dssp TCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC
Confidence 5544 3334444444433211 012333444556666555555543
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.71 E-value=63 Score=23.39 Aligned_cols=62 Identities=8% Similarity=0.194 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCC---hhhHHHHHHHHHhCCC--ccHHHHHHHHHHhCCCCC
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTEKN---VISWTTLIAGYAQMDQ--PNEAITLFRRMQVENVKP 73 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p 73 (372)
.+.++.=|...|+.++|...++++..|. ..+..++..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 5667888888899999999998887652 2334444444444322 334666677776666433
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.26 E-value=82 Score=24.56 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHH
Q 017414 93 LGEWIHNYIEQYGLNTI-VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTM 147 (372)
Q Consensus 93 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 147 (372)
....+|..|...|+-.. ...|......+...|++.+|.++|+.-.+........|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 187 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRF 187 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 33345555554443322 33444445555555555555555554444433333333
No 295
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=51.55 E-value=24 Score=23.24 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhHHH
Q 017414 124 GKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREAL 161 (372)
Q Consensus 124 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 161 (372)
.+.++|.++++.+.+++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887667655444
No 296
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=51.42 E-value=79 Score=24.13 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=40.4
Q ss_pred hHHHHHHHHHh---CCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHcCCC
Q 017414 42 SWTTLIAGYAQ---MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA-----VELGEWIHNYIEQYGLN 107 (372)
Q Consensus 42 ~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 107 (372)
.+.-+|+++.+ -.+++.|+-.+-+|++.| .|.-..-..++-+.-..|. ...|...++.....|.+
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33445555544 478889999999999988 6665555555556555553 23455555555666643
No 297
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=50.69 E-value=21 Score=23.56 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=14.5
Q ss_pred CHHHHHHHHhccCCCChhhHHHHHHHHHhCCC
Q 017414 24 DLNNARALFELMTEKNVISWTTLIAGYAQMDQ 55 (372)
Q Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 55 (372)
+.++|.++++.+++.+..+|..++.++...|+
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCc
Confidence 34444444444444444444444444443333
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.53 E-value=44 Score=29.97 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCH--HHH-HHHHHHHHhcCCHHHHHHHHhhC
Q 017414 176 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI--EQY-GCMIDLLGRAGYLQEAEKLLRRM 238 (372)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~-~~li~~~~~~g~~~~a~~~~~~~ 238 (372)
...++.+++.|...+.++.|..+..+..--....++. ..| .-+.+.+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4566677777777777777777777664100001111 112 23455666677777777776654
No 299
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=48.79 E-value=70 Score=22.78 Aligned_cols=61 Identities=16% Similarity=0.048 Sum_probs=31.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 017414 65 RMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126 (372)
Q Consensus 65 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 126 (372)
.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34455665554433 23333334444555666666666655444444444455666665543
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.89 E-value=71 Score=22.29 Aligned_cols=63 Identities=8% Similarity=0.171 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCC---hhhHHHHHHHHHhCCC--ccHHHHHHHHHHhCCCCCC
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTEKN---VISWTTLIAGYAQMDQ--PNEAITLFRRMQVENVKPD 74 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~ 74 (372)
.+.++.=|...|+.++|...++++..|. ..+..++..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4667888888999999999999987652 2334444444444332 3456677777776664433
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.77 E-value=66 Score=22.92 Aligned_cols=61 Identities=8% Similarity=0.085 Sum_probs=33.8
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 017414 166 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 166 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (372)
.+.+.|.+++..-. .++..+...+..-.|.++++.+.++ +...+..|...-++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCE
Confidence 34556666554332 2334444445556677777777654 4444555655666666666654
No 302
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=45.00 E-value=89 Score=23.78 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=29.7
Q ss_pred HHHHHHHH---hCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 017414 44 TTLIAGYA---QMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 89 (372)
Q Consensus 44 ~~l~~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 89 (372)
.-+|+++. +-.+++.|+-.+-+|++.|-.|.-..-..++-+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 33455554 44788899999999988886666555555555544444
No 303
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.25 E-value=1.3e+02 Score=24.73 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTEKN 39 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 39 (372)
...++.=|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 4678888999999999999999988754
No 304
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=41.74 E-value=1.2e+02 Score=23.38 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=43.6
Q ss_pred ChhhHHHHHHHHHh---CCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHcCCC
Q 017414 39 NVISWTTLIAGYAQ---MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA-----VELGEWIHNYIEQYGLN 107 (372)
Q Consensus 39 ~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 107 (372)
+...+.-+|+++.+ -.+++.|+-.+-+|++.|-.|.-..-..++-+.-..|. ...|...++.....|.+
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 44445556666654 47899999999999998877766665556666555543 23455555666666643
No 305
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.46 E-value=1e+02 Score=24.20 Aligned_cols=117 Identities=9% Similarity=0.082 Sum_probs=57.2
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhH--HHHHHHH
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEI---AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPL--NNALIDM 119 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 119 (372)
..+...++.|+.+....++ +.|..++.. .-.+.+...+..|+.+- ++.+.+.|..++... -.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHH
Confidence 4455567788876554444 444333211 11234445556677654 444455565543211 1234455
Q ss_pred HHhcCCHHHHHHHHHhcccC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 017414 120 YAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKP 174 (372)
Q Consensus 120 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 174 (372)
.+..|+.+-+..+++.-... +...++.+ ...+..|+.+- ++.+.+.|..+
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~ 131 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKA----LKFLYKRGANV 131 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHHH----HHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHHH----HHHHHHhCCCc
Confidence 56678887777777654332 22222233 33345666543 34444444443
No 306
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=39.36 E-value=76 Score=20.48 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHhcCChhH
Q 017414 95 EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGRE 159 (372)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (372)
..+++.+.+.|+- +..-+..+-. .....++|..+++.+.+.+..+|..++.++...+...-
T Consensus 25 ~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 25 SYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 3456666666532 2222222222 24667888888888888888888888888877665443
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.30 E-value=93 Score=22.29 Aligned_cols=60 Identities=8% Similarity=0.181 Sum_probs=30.8
Q ss_pred HHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 017414 167 MERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 167 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (372)
+.+.|.+++..-. .++..+...+..-.|.++++.+.++ +...+..|...-++.+...|-+
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcE
Confidence 4455655543322 2334444444556666777776654 4444555555556666666544
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=39.21 E-value=96 Score=22.64 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=40.4
Q ss_pred cHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCH
Q 017414 57 NEAITLFRR-MQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY--GLNTIVPLNNALIDMYAKSGKI 126 (372)
Q Consensus 57 ~~A~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 126 (372)
+.+++-+.+ +.+.|++++..= ..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444433 344577766543 34556666666667778888887776 5445544444456677777744
No 309
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.36 E-value=1e+02 Score=21.60 Aligned_cols=59 Identities=8% Similarity=0.042 Sum_probs=33.3
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 65 RMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 65 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.---++.+.+.|
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34556766665543 3444555554 55667778887777655555444444455555555
No 310
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.25 E-value=87 Score=21.77 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 017414 45 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 89 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 89 (372)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344445555556666666666666554455555544555554444
No 311
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.18 E-value=75 Score=23.22 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=43.3
Q ss_pred hHHHHHHHH-HHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhc-CCCcCHHHHHHHHHHHHhcCCHH
Q 017414 158 REALDMFSR-MERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY-GIEPKIEQYGCMIDLLGRAGYLQ 229 (372)
Q Consensus 158 ~~a~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 229 (372)
+.+++-+.+ +.+.|.+++..- ..++..+...+..-.|.++++.+.++. +...+..|...-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444444433 445677776543 345566666667778888888887531 22345666666677777777653
No 312
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.63 E-value=1.1e+02 Score=21.89 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=31.0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 017414 65 RMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126 (372)
Q Consensus 65 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 126 (372)
.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34555655544322 34444444445556666777776665444444444456666666643
No 313
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.49 E-value=1.6e+02 Score=23.57 Aligned_cols=92 Identities=11% Similarity=-0.004 Sum_probs=46.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHH
Q 017414 219 IDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESG 298 (372)
Q Consensus 219 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 298 (372)
+...+..|+.+-+..+++.-....+...-...+...+..|+.+-+..+++.-...+..+..-....+......|+.
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~---- 208 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI---- 208 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----
Confidence 3344566777766666665522222212233344445678877777777665554432222222212223344543
Q ss_pred HHHHHHHhCCCccCCc
Q 017414 299 KIRKVMRDMGVKKMPG 314 (372)
Q Consensus 299 ~~~~~m~~~g~~~~~~ 314 (372)
++.+.+.+.|..++..
T Consensus 209 ~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 209 EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHTTSCBCSTTT
T ss_pred HHHHHHHHcCCCCCCC
Confidence 4555566677765443
No 314
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=36.76 E-value=1.1e+02 Score=21.80 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=37.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 017414 64 RRMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126 (372)
Q Consensus 64 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 126 (372)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345667777765543 3445555554 5567888888888776555555444456666666643
No 315
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.52 E-value=1.3e+02 Score=22.32 Aligned_cols=123 Identities=13% Similarity=0.049 Sum_probs=53.2
Q ss_pred cCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHH
Q 017414 138 NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGC 217 (372)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 217 (372)
.++...-...+.++...+..+ +...+..+.. .++...-...+.++.+.++.+....+ ..+.. .++...-..
T Consensus 56 ~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l~----d~~~~vr~~ 126 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPL-IKALK----DEDWFVRIA 126 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHH-HHHTT----CSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHH-HHHHc----CCCHHHHHH
Confidence 344434344444444444432 2222222222 23444444444455555543322222 22321 244444445
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 017414 218 MIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLI 271 (372)
Q Consensus 218 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (372)
.+.++.+.|..+....+...+. .++..+-...+.++...|.. .+...+..+.
T Consensus 127 a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 127 AAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHTCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 5555555554332222223332 45555556666666666553 3444444443
No 316
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.76 E-value=64 Score=22.46 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=21.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC
Q 017414 147 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190 (372)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 190 (372)
++..+...+.+-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444445555555555555544444444444444444444
No 317
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.69 E-value=1.1e+02 Score=23.46 Aligned_cols=20 Identities=10% Similarity=-0.082 Sum_probs=9.0
Q ss_pred HHhCCCccHHHHHHHHHHhC
Q 017414 50 YAQMDQPNEAITLFRRMQVE 69 (372)
Q Consensus 50 ~~~~~~~~~A~~~~~~m~~~ 69 (372)
.+..|+.+.+..+++.+.+.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 34445555444444443333
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=35.33 E-value=1.6e+02 Score=24.66 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=13.6
Q ss_pred HHHHHHHHhCCCccHHHHHHHHH
Q 017414 44 TTLIAGYAQMDQPNEAITLFRRM 66 (372)
Q Consensus 44 ~~l~~~~~~~~~~~~A~~~~~~m 66 (372)
..++.-|...|+.++|...++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 44555566666666666665555
No 319
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.66 E-value=83 Score=22.21 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=18.9
Q ss_pred HHHHHHhCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 017414 46 LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL 88 (372)
Q Consensus 46 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 88 (372)
++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADA 61 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 3344444444445555555555444334444433333333333
No 320
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=33.85 E-value=35 Score=20.10 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCC
Q 017414 265 CALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMP 313 (372)
Q Consensus 265 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 313 (372)
+.++.+.++.|. ......--..-...|+.+.|+..+-.|...+..|..
T Consensus 11 e~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 11 EDLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 444555556664 222222222334567888888888777666665543
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.50 E-value=2.1e+02 Score=23.87 Aligned_cols=60 Identities=7% Similarity=0.133 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCh---hhHHHHHHHHHhCC-CccHHHHHHHHHHhCCC
Q 017414 12 WNTMVAGYAKVGDLNNARALFELMTEKNV---ISWTTLIAGYAQMD-QPNEAITLFRRMQVENV 71 (372)
Q Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~ 71 (372)
...++.=|...|+.++|...++++..|.- .+...+..++-+.. .-+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 46788889999999999999999987631 22333333322221 12345566666666554
No 322
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=32.79 E-value=86 Score=26.64 Aligned_cols=24 Identities=4% Similarity=-0.127 Sum_probs=15.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHH
Q 017414 78 MLAALSACAQLGAVELGEWIHNYI 101 (372)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~ 101 (372)
...++.-|...|+.++|...++++
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 345666666777777776666665
No 323
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=32.65 E-value=1.2e+02 Score=20.73 Aligned_cols=59 Identities=7% Similarity=-0.197 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 017414 61 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126 (372)
Q Consensus 61 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 126 (372)
..+.++.+ .++...-...+.++.+.++.+. ...+..+.+ .++..+-...+.++.+.|+.
T Consensus 45 ~~L~~~L~---d~~~~vR~~A~~aL~~~~~~~a-~~~L~~~L~---d~~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 45 EPLLESLS---NEDWRIRGAAAWIIGNFQDERA-VEPLIKLLE---DDSGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp HHHHHGGG---CSCHHHHHHHHHHHGGGCSHHH-HHHHHHHHH---HCCTHHHHHHHHHHHHHCSH
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcH
Confidence 44444444 3555555566666666665433 333333333 23444444555555555543
No 324
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.64 E-value=3.2e+02 Score=25.44 Aligned_cols=22 Identities=14% Similarity=-0.071 Sum_probs=18.4
Q ss_pred HHhcCCHHHHHHHHhhCCCCCC
Q 017414 222 LGRAGYLQEAEKLLRRMPFEAN 243 (372)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~ 243 (372)
+...|+++.|++.++++++-|.
T Consensus 548 ~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 3678999999999999966664
No 325
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.05 E-value=2.3e+02 Score=23.55 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=41.4
Q ss_pred CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHhCC
Q 017414 239 PFEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 308 (372)
Q Consensus 239 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 308 (372)
+++|. .-+...-+..+.+.+++..|..+.+++++++|... ..++|.+++......+
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 55553 33567778888999999999999999999998422 3355777777776544
No 326
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=30.92 E-value=1.2e+02 Score=25.18 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=26.6
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHh
Q 017414 164 FSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 205 (372)
Q Consensus 164 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 205 (372)
++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...
T Consensus 216 ~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 216 FAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 344455566666666666666666666667777777776654
No 327
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.63 E-value=60 Score=22.96 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=22.6
Q ss_pred HHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 017414 182 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 182 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (372)
++..+...+..-.|.++++.+.++ +...+..|...-++.+...|-+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCCE
Confidence 344444444455555566555543 3334444544555555555543
No 328
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.62 E-value=1.5e+02 Score=21.05 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=31.5
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 017414 65 RMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 126 (372)
Q Consensus 65 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 126 (372)
.+.+.|++++..=. .++..+...+ .-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34455666655432 2333333344 446677777776665444544444456666666643
No 329
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.43 E-value=74 Score=20.54 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=19.5
Q ss_pred CCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 017414 53 MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVE 92 (372)
Q Consensus 53 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 92 (372)
....++|..+++.+...| ...|..++.++...+...
T Consensus 49 ~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHH
Confidence 455566666666664433 345555566655555433
No 330
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.16 E-value=1.4e+02 Score=22.52 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=11.9
Q ss_pred HHHhcCCHHHHHHHHhccC
Q 017414 18 GYAKVGDLNNARALFELMT 36 (372)
Q Consensus 18 ~~~~~~~~~~A~~~~~~~~ 36 (372)
..++.|+++.+..+++.-.
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~ 33 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGY 33 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHcCC
Confidence 3456677777777766533
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.01 E-value=1.1e+02 Score=21.73 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=33.7
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 017414 166 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 228 (372)
Q Consensus 166 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (372)
.+.+.|++++..-. .++..+...+ .-.|.++++.+.++ +...+..|...-++.+...|-+
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCcE
Confidence 34456666665322 2333334444 55677777777654 4445566666666666666654
No 332
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.30 E-value=1.8e+02 Score=21.33 Aligned_cols=52 Identities=8% Similarity=-0.073 Sum_probs=34.0
Q ss_pred hCCCccHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHccCChHHHHHHHHHHHH
Q 017414 52 QMDQPNEAITLFRRMQVENVKP--DEIAMLAALS-A-----CAQLGAVELGEWIHNYIEQ 103 (372)
Q Consensus 52 ~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 103 (372)
..|++-+|.++++..=.....+ ....|..||+ + ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888887776554344 4455666666 2 2456777777777777664
No 333
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.27 E-value=1.5e+02 Score=21.17 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHhCC-CccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 017414 41 ISWTTLIAGYAQMD-QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV 91 (372)
Q Consensus 41 ~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 91 (372)
..-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34455666666666 6788999999999887667777766667777666643
No 334
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.36 E-value=3.8e+02 Score=24.95 Aligned_cols=220 Identities=11% Similarity=-0.001 Sum_probs=98.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCcchHHHHHHHHHh---cCC
Q 017414 80 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLAL---HGL 156 (372)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~~~ 156 (372)
....++.-.|+++.|.+++-.. ...+...+...+.- .|-+.....++..-.......+..||..|.+ ..+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~---~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td 371 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLAS---LKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSD 371 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHH---TTC-----------------CHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHH---cCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCC
Confidence 3455666789999998877643 13333333322222 2333221111111000112346677777765 567
Q ss_pred hhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCchHHHH-----------HHHHHhHHhcCCCc-CHHHH---HHHH
Q 017414 157 GREALDMFSRMERARVKPNE--ITFIAILSACCHVGLVELGR-----------RYFNIMKSRYGIEP-KIEQY---GCMI 219 (372)
Q Consensus 157 ~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~-~~~~~---~~li 219 (372)
+.+|+++|--+...+ .++. ..+..+-+.....+.++.-. .++++-..-.++.- ..... ....
T Consensus 372 ~~~Al~Y~~li~l~~-g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA 450 (661)
T 2qx5_A 372 PRVAVEYLVLITLNE-GPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAA 450 (661)
T ss_dssp HHHHHHHHHGGGGSC-CHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-CchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHH
Confidence 888888877663221 1111 12222222223333332111 11111110001110 11111 2233
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCH--HHHHHHHH-HHHHcC--C---------hhHHHHHHHHHHHh-----------C
Q 017414 220 DLLGRAGYLQEAEKLLRRMPFEANA--AIWGSLLA-ASNIYG--D---------VELGECALQHLIKL-----------E 274 (372)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~l~~-~~~~~~--~---------~~~a~~~~~~~~~~-----------~ 274 (372)
.-+...|++++|..+|.-.+ ..|. ...+.++. +..... + .+.-..+.+.+.+. .
T Consensus 451 ~~ae~~G~~~dAi~LY~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAE-EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Confidence 45667899999999999886 3332 23444444 332221 1 11223333333331 1
Q ss_pred CCCcchHHHHHHH-----HHHcCCchhHHHHHHHHHhCCCcc
Q 017414 275 PHNSGNYAILSNI-----YAILGRWNESGKIRKVMRDMGVKK 311 (372)
Q Consensus 275 p~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~~g~~~ 311 (372)
+.+..++..|... +...|+|+.|++.++++ ++-|
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llP 568 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLP 568 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC
Confidence 1233455555433 36789999999888765 4554
No 335
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.01 E-value=1.1e+02 Score=20.95 Aligned_cols=42 Identities=12% Similarity=-0.054 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 017414 62 LFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ 103 (372)
Q Consensus 62 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 103 (372)
+|+.+.+..+.|+...-..-+..+...++++.|..+...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555545544433333333444566777777777766664
No 336
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.98 E-value=1.9e+02 Score=21.09 Aligned_cols=50 Identities=12% Similarity=-0.031 Sum_probs=23.2
Q ss_pred CChhHHHHHHHHHHHcCCCC--CHHHHHHHHH------HhcccCchHHHHHHHHHhHH
Q 017414 155 GLGREALDMFSRMERARVKP--NEITFIAILS------ACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 204 (372)
|++-+|-++++..-.....+ ....+..||. ...+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555555544433233 2333334443 12234555555555555543
No 337
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=25.15 E-value=2.2e+02 Score=21.33 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=15.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCC
Q 017414 252 AASNIYGDVELGECALQHLIKLEP 275 (372)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~p 275 (372)
..+...|-.++...+|..+.+.+|
T Consensus 216 ~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 216 RRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHhcccchhHHHHHHHHHhcCC
Confidence 345566666766666666666665
No 338
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.81 E-value=1.3e+02 Score=18.56 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=33.3
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 017414 65 RMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 124 (372)
Q Consensus 65 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 124 (372)
.+.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+.+.|
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 35556766665443 4445555443 44556677777766654445555545566665555
No 339
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=24.46 E-value=3e+02 Score=24.54 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 017414 225 AGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 289 (372)
Q Consensus 225 ~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 289 (372)
...++.|...|.+. .+.| +...|+.|.-.....|+.-.|.-.|-+......+.+.+...|...+.
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34455555555554 2223 33445555555555555544444444444433334445555554444
No 340
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.24 E-value=1.9e+02 Score=21.89 Aligned_cols=52 Identities=8% Similarity=-0.028 Sum_probs=25.7
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCCHHHHHHHHH
Q 017414 83 SACAQLGAVELGEWIHNYIEQYGLNTIVPL--NNALIDMYAKSGKIGKALQVFE 134 (372)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 134 (372)
...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 344556777766666666555554433211 1123334444555555444444
No 341
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.22 E-value=2.2e+02 Score=24.36 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHhcccCchHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHhhC--CC-----------------C
Q 017414 182 ILSACCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRM--PF-----------------E 241 (372)
Q Consensus 182 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~--~~-----------------~ 241 (372)
+...+......+...++|+.....+.-+.++ .....++.......+.+++.+.++++ .+ .
T Consensus 45 L~~~~~~~~~~~~~~~ly~~fi~~f~~kin~L~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~e 124 (393)
T 4b4t_O 45 LTKFFDDAKSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGD 124 (393)
T ss_dssp THHHHCCCSSCCCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCC
T ss_pred HHHHHhChhcchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhh
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-------hCC-CCcchHHHHHHHHHHcCCchhHHHHH
Q 017414 242 ANAAIWGSLLAASNIYGDVELGECALQHLIK-------LEP-HNSGNYAILSNIYAILGRWNESGKIR 301 (372)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (372)
+-......+...+...|+.+.|..+++++.. ..| .....|...+..|...+++..+....
T Consensus 125 a~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~ 192 (393)
T 4b4t_O 125 GILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTS 192 (393)
T ss_dssp SHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
No 342
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.00 E-value=33 Score=20.21 Aligned_cols=29 Identities=24% Similarity=0.101 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017414 57 NEAITLFRRMQVENVKPDEIAMLAALSAC 85 (372)
Q Consensus 57 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 85 (372)
++|.+.|.+|++..-.+...+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45566666655542233334455544444
No 343
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.99 E-value=1.4e+02 Score=24.57 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=10.9
Q ss_pred HHHHHHHhCCCccHHHHHHHHH
Q 017414 45 TLIAGYAQMDQPNEAITLFRRM 66 (372)
Q Consensus 45 ~l~~~~~~~~~~~~A~~~~~~m 66 (372)
.++.-|...|+.++|.+.++++
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL 192 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKEL 192 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHc
Confidence 3444444445555555555444
No 344
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.06 E-value=2.5e+02 Score=21.35 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=27.9
Q ss_pred HHHHHH---hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC
Q 017414 147 MIAGLA---LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190 (372)
Q Consensus 147 l~~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 190 (372)
+|+++. +-.+++.|+-.+-+|++.|-.|....-..++.+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 445543 45778888888888888877666555444544444433
No 345
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.91 E-value=3.5e+02 Score=22.90 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCCCCh----hhHHHHHHHHHhCCCc--cHHHHHHHHHHhCCCCCCHH
Q 017414 10 KFWNTMVAGYAKVGDLNNARALFELMTEKNV----ISWTTLIAGYAQMDQP--NEAITLFRRMQVENVKPDEI 76 (372)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~ 76 (372)
..-..++.=|...|++++|...++++..|+. ..+..+..++ ..++. +.+..++..+...++-+...
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls~~~ 84 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIATSDN 84 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3457788999999999999999999988752 2344444433 33322 34555666666655433333
No 346
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.53 E-value=1.7e+02 Score=19.26 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc-hHH-HHHHHHHhHHhcCCCcCHHHHHHH
Q 017414 159 EALDMFSRMERARVKPNEITFIAILSACCHVGL-VEL-GRRYFNIMKSRYGIEPKIEQYGCM 218 (372)
Q Consensus 159 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~-a~~~~~~~~~~~~~~~~~~~~~~l 218 (372)
.|.++.+++..-|+.|+......++..|...+. .++ +.+++.--....|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 356677777788888888888888877765543 111 222222222334778887766554
No 347
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.29 E-value=1.3e+02 Score=22.72 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=22.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHHHHHHHh
Q 017414 251 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 306 (372)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (372)
+...+..|+.+-+..+++.-...+..+..-. .-+....+.|+.+-+.-+++...+
T Consensus 181 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhc
Confidence 3334456666555444443211111111111 123344556666655555544333
No 348
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.97 E-value=2.4e+02 Score=20.60 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=12.7
Q ss_pred HHHHhcCCHHHHHHHHhccC
Q 017414 17 AGYAKVGDLNNARALFELMT 36 (372)
Q Consensus 17 ~~~~~~~~~~~A~~~~~~~~ 36 (372)
...+..|+.+.+..++..-.
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTT
T ss_pred HHHHHhccHHHHHHHHHcCC
Confidence 33456677777777776544
No 349
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.61 E-value=3e+02 Score=21.65 Aligned_cols=215 Identities=8% Similarity=-0.039 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC----HHHHHHHHHh--cccCCcchHHH
Q 017414 73 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK----IGKALQVFEN--MKNKSVITWTT 146 (372)
Q Consensus 73 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~--~~~~~~~~~~~ 146 (372)
++...-...+.++.+.+.. .+...+..+.+ .++..+-...+.++.+.|. ......++.. ...++..+-..
T Consensus 35 ~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~ 110 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ-DAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRAT 110 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH-HHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCc-hHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHH
Confidence 4444444455555555543 23333333333 3444455555566666553 2333344432 23456555566
Q ss_pred HHHHHHhcCC-----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 017414 147 MIAGLALHGL-----GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 221 (372)
Q Consensus 147 l~~~~~~~~~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 221 (372)
.+.++...+. ...+...+..... .++...-...+.++...|+.+ +...+..+.. .++...-...+.+
T Consensus 111 a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~a 182 (280)
T 1oyz_A 111 AIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK----DPNGDVRNWAAFA 182 (280)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT----CSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc----CCCHHHHHHHHHH
Confidence 6666665542 3345555544443 456666566666677766643 4444444442 3455555555566
Q ss_pred HHhcC-CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCCchhHHHH
Q 017414 222 LGRAG-YLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI 300 (372)
Q Consensus 222 ~~~~g-~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 300 (372)
+...| ....+...+..+-..++..+-...+.++...|+......+.. ..+ ++ + +....+.++.+.|.. .+...
T Consensus 183 L~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~-~l~-d~-~--vr~~a~~aL~~i~~~-~~~~~ 256 (280)
T 1oyz_A 183 ININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCD-ELK-KN-T--VYDDIIEAAGELGDK-TLLPV 256 (280)
T ss_dssp HHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHH-HHT-SS-S--CCHHHHHHHHHHCCG-GGHHH
T ss_pred HHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHH-Hhc-Cc-c--HHHHHHHHHHhcCch-hhhHH
Confidence 65554 123444444333225677777777778888886543333333 332 12 2 334556677777764 45555
Q ss_pred HHHHH
Q 017414 301 RKVMR 305 (372)
Q Consensus 301 ~~~m~ 305 (372)
+..+.
T Consensus 257 L~~~l 261 (280)
T 1oyz_A 257 LDTML 261 (280)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 350
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.02 E-value=1.3e+02 Score=20.64 Aligned_cols=42 Identities=5% Similarity=-0.078 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHH
Q 017414 163 MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 204 (372)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 204 (372)
+|+.+....+.|+...-..-+..+...++++.|..+...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444544433333333444566777777777766664
No 351
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=20.98 E-value=78 Score=18.55 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=13.1
Q ss_pred cCchHHHHHHHHHhHHhcCCCcC
Q 017414 189 VGLVELGRRYFNIMKSRYGIEPK 211 (372)
Q Consensus 189 ~~~~~~a~~~~~~~~~~~~~~~~ 211 (372)
.-+++.|...|..+.....++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 44666666666666544345544
No 352
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.69 E-value=4.4e+02 Score=23.31 Aligned_cols=57 Identities=18% Similarity=0.036 Sum_probs=32.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCchHHHHHHHHHhHHhcCCCcCHHHH
Q 017414 154 HGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY 215 (372)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 215 (372)
..+.+-|.++-. +.|++-....|..-...+...|++++|-++--.... |+--+..|.
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti 398 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTI 398 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHH
Confidence 355665555533 345554555566666666677777777766655553 444455444
No 353
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.38 E-value=83 Score=20.49 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHH
Q 017414 43 WTTLIAGYAQMDQPNEAITLFRRM 66 (372)
Q Consensus 43 ~~~l~~~~~~~~~~~~A~~~~~~m 66 (372)
+.-....+.+.|+|++|++..++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 334445556666666665555443
No 354
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=20.36 E-value=3e+02 Score=25.58 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=43.6
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCcchHHHHHHHHHHcCC
Q 017414 229 QEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 293 (372)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 293 (372)
+.|.++.+.|+ ...............|++.-|.++++.+...+|.+..+...+..+|.+.|.
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34444455443 122233344556678999999999999999999999888888888877653
No 355
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.33 E-value=2.2e+02 Score=19.73 Aligned_cols=52 Identities=8% Similarity=0.129 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHhCC-CccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 017414 40 VISWTTLIAGYAQMD-QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAV 91 (372)
Q Consensus 40 ~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 91 (372)
...-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 334556667777666 7888999999999887667777766666666665543
No 356
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.26 E-value=2.6e+02 Score=20.51 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=25.5
Q ss_pred HHhcCCHHHHHHHHhccCCC-ChhhHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC
Q 017414 19 YAKVGDLNNARALFELMTEK-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 74 (372)
Q Consensus 19 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 74 (372)
.++.|+++....++..-... +...-.+.+...+..|+.+.-.++.+.+++.|..++
T Consensus 13 Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 34566666666665543221 101111233334445554444455555555555444
No 357
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.20 E-value=2.9e+02 Score=21.05 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=22.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC
Q 017414 153 LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 190 (372)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 190 (372)
+-.+++.|+-.+-+|++.| .|....-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4567777777777777777 555444444444444433
Done!