Query 017417
Match_columns 372
No_of_seqs 187 out of 3161
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1460 GDP-mannose pyrophosph 100.0 2.3E-58 4.9E-63 398.6 25.1 355 8-369 2-362 (407)
2 KOG1322 GDP-mannose pyrophosph 100.0 2E-52 4.3E-57 367.6 23.9 318 7-363 8-332 (371)
3 COG0448 GlgC ADP-glucose pyrop 100.0 1.2E-50 2.6E-55 369.5 25.5 332 5-366 2-364 (393)
4 COG1208 GCD1 Nucleoside-diphos 100.0 9.1E-50 2E-54 375.3 28.7 314 8-358 1-324 (358)
5 PRK00844 glgC glucose-1-phosph 100.0 2.7E-48 5.9E-53 373.9 30.3 333 5-365 2-383 (407)
6 PRK05293 glgC glucose-1-phosph 100.0 9E-48 2E-52 368.3 30.2 334 7-370 2-365 (380)
7 PRK00725 glgC glucose-1-phosph 100.0 1.7E-46 3.8E-51 362.6 29.4 336 5-368 12-398 (425)
8 PRK02862 glgC glucose-1-phosph 100.0 1.9E-45 4.1E-50 355.8 29.3 326 7-366 2-396 (429)
9 TIGR02092 glgD glucose-1-phosp 100.0 2E-45 4.3E-50 350.6 28.4 332 7-370 1-361 (369)
10 PLN02241 glucose-1-phosphate a 100.0 1.3E-44 2.7E-49 351.0 28.3 326 7-365 2-402 (436)
11 TIGR02091 glgC glucose-1-phosp 100.0 2.2E-44 4.8E-49 342.6 28.5 325 11-363 1-360 (361)
12 TIGR01208 rmlA_long glucose-1- 100.0 6.6E-44 1.4E-48 338.2 27.7 319 10-363 1-338 (353)
13 COG1207 GlmU N-acetylglucosami 100.0 1E-41 2.3E-46 310.6 23.9 322 8-368 2-341 (460)
14 COG1209 RfbA dTDP-glucose pyro 100.0 8.1E-41 1.8E-45 289.3 15.9 276 9-341 1-283 (286)
15 PRK14355 glmU bifunctional N-a 100.0 2.4E-39 5.1E-44 317.2 27.1 318 8-365 3-338 (459)
16 PRK14356 glmU bifunctional N-a 100.0 1.6E-38 3.4E-43 311.6 25.2 319 5-365 2-339 (456)
17 PRK14352 glmU bifunctional N-a 100.0 3.6E-38 7.7E-43 310.4 27.7 319 7-365 3-340 (482)
18 PRK14358 glmU bifunctional N-a 100.0 1.8E-37 3.8E-42 304.4 27.9 318 7-365 6-340 (481)
19 TIGR01173 glmU UDP-N-acetylglu 100.0 9.5E-37 2.1E-41 298.8 24.1 313 9-365 1-331 (451)
20 KOG1462 Translation initiation 100.0 1.4E-37 3.1E-42 279.0 16.2 352 4-365 5-403 (433)
21 cd06428 M1P_guanylylT_A_like_N 100.0 6.3E-37 1.4E-41 277.8 19.9 250 11-268 1-256 (257)
22 PRK09451 glmU bifunctional N-a 100.0 4.4E-36 9.5E-41 294.0 24.8 313 7-362 4-350 (456)
23 KOG1461 Translation initiation 100.0 2.7E-35 5.9E-40 278.8 27.3 331 6-367 22-404 (673)
24 TIGR01105 galF UTP-glucose-1-p 100.0 3.3E-36 7.2E-41 276.1 17.9 231 8-269 3-276 (297)
25 cd06425 M1P_guanylylT_B_like_N 100.0 8.3E-36 1.8E-40 266.7 18.9 227 9-269 1-232 (233)
26 PRK14353 glmU bifunctional N-a 100.0 8.5E-35 1.9E-39 284.4 26.7 312 7-360 4-334 (446)
27 PRK14354 glmU bifunctional N-a 100.0 8.7E-35 1.9E-39 285.4 24.8 313 8-363 2-332 (458)
28 PRK15480 glucose-1-phosphate t 100.0 2.8E-35 6E-40 269.4 18.8 231 7-270 2-241 (292)
29 PRK14359 glmU bifunctional N-a 100.0 1.8E-34 3.9E-39 281.0 25.6 302 8-354 2-322 (430)
30 PRK14357 glmU bifunctional N-a 100.0 2.8E-34 6.1E-39 280.9 26.0 305 9-362 1-321 (448)
31 PRK10122 GalU regulator GalF; 100.0 4.8E-35 1E-39 269.2 18.5 232 7-269 2-276 (297)
32 PF00483 NTP_transferase: Nucl 100.0 2.5E-35 5.4E-40 266.1 15.3 232 10-270 1-246 (248)
33 cd02538 G1P_TT_short G1P_TT_sh 100.0 9.7E-35 2.1E-39 260.9 16.9 228 9-269 1-237 (240)
34 TIGR01207 rmlA glucose-1-phosp 100.0 1.1E-34 2.4E-39 265.1 17.1 228 10-270 1-237 (286)
35 PRK14360 glmU bifunctional N-a 100.0 3.7E-33 8E-38 273.3 25.6 311 9-363 2-347 (450)
36 TIGR02623 G1P_cyt_trans glucos 100.0 5.6E-33 1.2E-37 251.0 18.3 222 10-272 1-247 (254)
37 PRK13389 UTP--glucose-1-phosph 100.0 4.9E-33 1.1E-37 256.2 17.7 232 5-269 5-279 (302)
38 TIGR01099 galU UTP-glucose-1-p 100.0 3.2E-33 6.9E-38 254.1 16.2 227 9-265 1-260 (260)
39 cd02541 UGPase_prokaryotic Pro 100.0 4.6E-33 1E-37 254.0 16.2 231 9-269 1-264 (267)
40 cd04189 G1P_TT_long G1P_TT_lon 100.0 2.4E-32 5.3E-37 244.8 17.8 228 9-270 1-234 (236)
41 cd06422 NTP_transferase_like_1 100.0 4.5E-32 9.8E-37 240.6 15.9 213 10-265 1-221 (221)
42 COG1210 GalU UDP-glucose pyrop 100.0 2.2E-31 4.9E-36 230.8 15.7 236 5-270 1-270 (291)
43 cd06915 NTP_transferase_WcbM_l 100.0 4.8E-31 1E-35 234.1 17.2 217 11-265 1-222 (223)
44 cd02524 G1P_cytidylyltransfera 100.0 4.7E-31 1E-35 238.8 17.1 221 11-270 1-246 (253)
45 cd04181 NTP_transferase NTP_tr 100.0 1.1E-30 2.3E-35 231.0 18.0 212 11-257 1-217 (217)
46 cd06426 NTP_transferase_like_2 100.0 3.1E-30 6.7E-35 228.6 16.8 214 11-266 1-220 (220)
47 cd02523 PC_cytidylyltransferas 99.9 1.4E-27 3E-32 213.0 13.4 220 11-265 1-228 (229)
48 cd04197 eIF-2B_epsilon_N The N 99.9 6.8E-27 1.5E-31 206.7 16.2 176 9-191 1-217 (217)
49 cd02508 ADP_Glucose_PP ADP-glu 99.9 3.4E-27 7.3E-32 206.0 13.9 182 11-256 1-200 (200)
50 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 2.6E-26 5.6E-31 205.1 16.7 218 11-262 1-230 (231)
51 cd02509 GDP-M1P_Guanylyltransf 99.9 1.2E-24 2.6E-29 198.5 17.0 238 9-261 1-273 (274)
52 cd02540 GT2_GlmU_N_bac N-termi 99.9 7.1E-24 1.5E-28 189.0 16.0 213 11-261 1-228 (229)
53 cd02507 eIF-2B_gamma_N_like Th 99.9 8.6E-24 1.9E-28 186.6 15.6 177 9-191 1-216 (216)
54 cd04198 eIF-2B_gamma_N The N-t 99.9 1.1E-23 2.3E-28 185.8 14.9 177 9-191 1-214 (214)
55 PRK05450 3-deoxy-manno-octulos 99.9 3.1E-23 6.7E-28 186.9 17.1 221 8-269 2-244 (245)
56 TIGR01479 GMP_PMI mannose-1-ph 99.9 2.8E-22 6.1E-27 195.5 17.2 242 9-265 1-280 (468)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 7.3E-22 1.6E-26 177.2 16.3 215 8-267 1-238 (239)
58 COG1213 Predicted sugar nucleo 99.9 4.8E-22 1E-26 169.8 11.9 220 7-270 2-229 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 1.2E-20 2.7E-25 169.1 16.1 215 8-267 2-236 (238)
60 COG0836 {ManC} Mannose-1-phosp 99.8 4.6E-19 1E-23 157.8 15.6 244 8-264 1-280 (333)
61 PRK15460 cpsB mannose-1-phosph 99.8 9.9E-19 2.1E-23 169.1 16.2 243 8-264 5-288 (478)
62 PLN02917 CMP-KDO synthetase 99.8 1.2E-17 2.6E-22 153.2 17.9 223 7-270 46-288 (293)
63 COG4750 LicC CTP:phosphocholin 99.7 5E-16 1.1E-20 127.6 10.1 166 9-197 1-171 (231)
64 TIGR00466 kdsB 3-deoxy-D-manno 99.6 2.5E-14 5.5E-19 127.9 17.6 212 10-262 1-237 (238)
65 PF12804 NTP_transf_3: MobA-li 99.6 1.4E-14 3E-19 121.7 8.8 117 11-143 1-124 (160)
66 PRK00155 ispD 2-C-methyl-D-ery 99.5 6.6E-14 1.4E-18 124.6 12.3 212 7-270 2-223 (227)
67 TIGR00454 conserved hypothetic 99.5 5.2E-14 1.1E-18 120.5 9.9 120 9-143 1-127 (183)
68 PRK09382 ispDF bifunctional 2- 99.5 1.5E-13 3.2E-18 130.1 13.3 202 6-270 3-213 (378)
69 cd02513 CMP-NeuAc_Synthase CMP 99.5 2.4E-13 5.3E-18 120.5 13.7 168 8-192 1-187 (223)
70 TIGR03310 matur_ygfJ molybdenu 99.5 1.2E-13 2.7E-18 119.0 11.4 114 11-138 2-123 (188)
71 cd02516 CDP-ME_synthetase CDP- 99.5 2.8E-13 6.1E-18 119.7 11.6 166 10-197 2-175 (218)
72 TIGR00453 ispD 2-C-methyl-D-er 99.5 2.4E-13 5.2E-18 120.1 11.1 205 10-267 1-215 (217)
73 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.5 2E-13 4.4E-18 120.7 9.5 126 232-363 31-176 (231)
74 PRK13385 2-C-methyl-D-erythrit 99.5 4.3E-13 9.4E-18 119.5 11.3 212 9-269 3-223 (230)
75 cd04182 GT_2_like_f GT_2_like_ 99.5 5.1E-13 1.1E-17 114.8 11.1 114 9-135 1-121 (186)
76 TIGR03202 pucB xanthine dehydr 99.4 1.4E-12 3.1E-17 112.7 11.2 116 9-133 1-124 (190)
77 TIGR03584 PseF pseudaminic aci 99.4 1E-11 2.2E-16 109.8 14.0 199 11-269 2-220 (222)
78 COG2266 GTP:adenosylcobinamide 99.4 6E-12 1.3E-16 103.1 10.0 106 9-131 1-112 (177)
79 TIGR02665 molyb_mobA molybdopt 99.3 7E-12 1.5E-16 107.9 10.9 111 9-134 1-117 (186)
80 cd02503 MobA MobA catalyzes th 99.3 4.3E-12 9.2E-17 108.8 9.1 102 9-130 1-109 (181)
81 PRK02726 molybdopterin-guanine 99.3 7.7E-12 1.7E-16 108.9 9.4 109 5-131 4-119 (200)
82 PRK00560 molybdopterin-guanine 99.3 1.3E-11 2.8E-16 107.1 9.8 103 1-126 1-112 (196)
83 PRK00317 mobA molybdopterin-gu 99.3 1.8E-11 4E-16 106.0 10.5 109 7-132 2-116 (193)
84 cd05824 LbH_M1P_guanylylT_C Ma 99.3 2.2E-11 4.9E-16 89.6 9.2 68 298-365 2-69 (80)
85 COG1212 KdsB CMP-2-keto-3-deox 99.3 8.3E-11 1.8E-15 99.9 13.3 223 8-270 3-243 (247)
86 PF01128 IspD: 2-C-methyl-D-er 99.3 1.2E-10 2.6E-15 102.0 14.6 209 9-269 1-219 (221)
87 COG0746 MobA Molybdopterin-gua 99.2 3.3E-11 7.1E-16 103.4 9.2 108 6-133 2-115 (192)
88 cd03356 LbH_G1P_AT_C_like Left 99.2 5.4E-11 1.2E-15 87.4 9.1 67 298-365 2-68 (79)
89 PLN02728 2-C-methyl-D-erythrit 99.2 5.1E-11 1.1E-15 106.9 10.1 128 3-144 18-155 (252)
90 COG2068 Uncharacterized MobA-r 99.2 7.9E-11 1.7E-15 99.3 10.1 116 6-133 3-125 (199)
91 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 8E-11 1.7E-15 86.9 9.0 65 295-360 16-80 (81)
92 COG1211 IspD 4-diphosphocytidy 99.2 9E-11 2E-15 102.4 10.5 127 6-144 2-137 (230)
93 cd05787 LbH_eIF2B_epsilon eIF- 99.2 1.2E-10 2.6E-15 85.5 9.1 68 298-366 2-69 (79)
94 cd02518 GT2_SpsF SpsF is a gly 99.2 1.8E-10 4E-15 102.8 11.9 110 11-138 2-121 (233)
95 PRK14489 putative bifunctional 99.2 1.2E-10 2.7E-15 110.6 10.7 118 8-140 5-128 (366)
96 cd05636 LbH_G1P_TT_C_like Puta 99.1 4.6E-10 1E-14 94.5 11.1 78 288-365 28-105 (163)
97 cd04652 LbH_eIF2B_gamma_C eIF- 99.1 4.6E-10 9.9E-15 82.8 9.4 66 298-364 2-67 (81)
98 cd04651 LbH_G1P_AT_C Glucose-1 99.1 5.4E-10 1.2E-14 86.5 10.1 73 290-365 8-80 (104)
99 TIGR02287 PaaY phenylacetic ac 99.1 6.5E-10 1.4E-14 95.5 9.8 76 288-363 19-102 (192)
100 cd05636 LbH_G1P_TT_C_like Puta 99.1 1.2E-09 2.5E-14 92.1 11.1 76 288-363 10-86 (163)
101 cd04745 LbH_paaY_like paaY-lik 99.1 1.2E-09 2.5E-14 91.2 10.8 51 314-364 62-113 (155)
102 cd05635 LbH_unknown Uncharacte 99.1 1.9E-09 4.2E-14 82.7 10.6 77 288-366 22-98 (101)
103 cd03353 LbH_GlmU_C N-acetyl-gl 99.0 2.1E-09 4.6E-14 93.1 11.0 71 291-362 29-100 (193)
104 COG0663 PaaY Carbonic anhydras 99.0 2.3E-09 4.9E-14 88.7 10.3 82 288-369 22-129 (176)
105 PLN02472 uncharacterized prote 99.0 3.1E-09 6.6E-14 94.6 11.2 71 296-366 99-180 (246)
106 cd03356 LbH_G1P_AT_C_like Left 99.0 3.4E-09 7.4E-14 77.7 9.7 67 290-358 12-79 (79)
107 PRK14490 putative bifunctional 99.0 2.3E-09 4.9E-14 102.2 10.4 105 7-129 173-283 (369)
108 cd04650 LbH_FBP Ferripyochelin 99.0 4.3E-09 9.3E-14 87.5 10.7 73 291-363 14-94 (154)
109 COG1044 LpxD UDP-3-O-[3-hydrox 99.0 1.5E-09 3.3E-14 98.3 8.2 72 292-363 108-181 (338)
110 PLN02296 carbonate dehydratase 99.0 3.9E-09 8.5E-14 95.2 10.8 76 289-364 64-153 (269)
111 cd05824 LbH_M1P_guanylylT_C Ma 99.0 5.8E-09 1.3E-13 76.7 9.6 69 289-358 11-80 (80)
112 cd00208 LbetaH Left-handed par 99.0 5.8E-09 1.2E-13 76.0 9.5 67 296-362 1-77 (78)
113 PRK13627 carnitine operon prot 99.0 6.6E-09 1.4E-13 89.6 11.0 77 288-364 21-105 (196)
114 PRK14500 putative bifunctional 98.9 4.9E-09 1.1E-13 98.2 10.4 106 7-130 159-270 (346)
115 PLN02472 uncharacterized prote 98.9 7.2E-09 1.6E-13 92.2 10.9 80 287-366 69-162 (246)
116 KOG1461 Translation initiation 98.9 1.9E-09 4E-14 104.1 7.0 71 294-365 349-420 (673)
117 cd03358 LbH_WxcM_N_like WcxM-l 98.9 1.2E-08 2.7E-13 81.0 10.4 77 289-365 10-103 (119)
118 COG1044 LpxD UDP-3-O-[3-hydrox 98.9 5.5E-09 1.2E-13 94.8 9.0 70 296-365 130-220 (338)
119 cd04645 LbH_gamma_CA_like Gamm 98.9 1.5E-08 3.3E-13 84.3 10.4 70 296-365 39-113 (153)
120 cd04646 LbH_Dynactin_6 Dynacti 98.9 2.1E-08 4.5E-13 84.3 11.2 71 295-365 38-119 (164)
121 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.9 1.3E-08 2.9E-13 91.9 10.7 76 288-363 22-118 (254)
122 cd04651 LbH_G1P_AT_C Glucose-1 98.9 9.2E-09 2E-13 79.6 7.7 61 302-364 2-62 (104)
123 TIGR00965 dapD 2,3,4,5-tetrahy 98.9 1.6E-08 3.6E-13 89.9 10.2 71 295-365 129-209 (269)
124 TIGR01853 lipid_A_lpxD UDP-3-O 98.9 1.3E-08 2.8E-13 94.9 10.0 75 289-363 97-173 (324)
125 PRK05289 UDP-N-acetylglucosami 98.9 1.9E-08 4.1E-13 91.2 10.7 73 290-362 27-120 (262)
126 TIGR01852 lipid_A_lpxA acyl-[a 98.8 2.9E-08 6.2E-13 89.8 11.7 74 289-362 22-116 (254)
127 TIGR02287 PaaY phenylacetic ac 98.8 1.8E-08 4E-13 86.6 9.6 73 295-367 47-124 (192)
128 cd04193 UDPGlcNAc_PPase UDPGlc 98.8 1.5E-07 3.3E-12 87.4 15.9 182 7-195 14-255 (323)
129 cd03350 LbH_THP_succinylT 2,3, 98.8 4.9E-08 1.1E-12 79.8 10.9 75 291-365 27-111 (139)
130 cd04745 LbH_paaY_like paaY-lik 98.8 4E-08 8.6E-13 81.9 10.5 78 288-365 11-96 (155)
131 cd05787 LbH_eIF2B_epsilon eIF- 98.8 3.7E-08 8.1E-13 72.0 9.2 63 295-358 16-79 (79)
132 TIGR01853 lipid_A_lpxD UDP-3-O 98.8 1.9E-08 4.1E-13 93.8 9.3 14 353-366 195-208 (324)
133 TIGR01172 cysE serine O-acetyl 98.8 5E-08 1.1E-12 81.8 10.7 77 289-365 61-149 (162)
134 cd03360 LbH_AT_putative Putati 98.8 5.4E-08 1.2E-12 83.9 11.3 71 295-365 114-186 (197)
135 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.8 3.9E-08 8.6E-13 88.8 10.7 75 288-362 40-135 (254)
136 TIGR03570 NeuD_NnaD sugar O-ac 98.8 6.1E-08 1.3E-12 84.2 11.5 75 291-365 113-189 (201)
137 PLN02296 carbonate dehydratase 98.8 4.6E-08 9.9E-13 88.3 10.4 70 296-365 92-172 (269)
138 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.8 3.6E-08 7.7E-13 87.4 9.4 77 289-365 110-196 (231)
139 TIGR03308 phn_thr-fam phosphon 98.8 3.7E-08 8.1E-13 85.6 9.4 68 297-365 4-71 (204)
140 cd03358 LbH_WxcM_N_like WcxM-l 98.8 4.9E-08 1.1E-12 77.5 9.2 41 290-330 5-45 (119)
141 PRK12461 UDP-N-acetylglucosami 98.8 5.8E-08 1.3E-12 87.3 10.7 52 295-346 29-93 (255)
142 cd03353 LbH_GlmU_C N-acetyl-gl 98.8 6E-08 1.3E-12 84.0 10.3 75 290-364 10-84 (193)
143 COG1083 NeuA CMP-N-acetylneura 98.7 1.4E-07 2.9E-12 80.0 11.6 166 7-192 2-186 (228)
144 cd03350 LbH_THP_succinylT 2,3, 98.7 1.2E-07 2.6E-12 77.5 11.1 27 338-364 77-104 (139)
145 KOG1462 Translation initiation 98.7 2.5E-08 5.3E-13 91.2 7.6 70 294-364 350-419 (433)
146 cd03360 LbH_AT_putative Putati 98.7 9.1E-08 2E-12 82.5 11.0 73 292-364 93-167 (197)
147 cd03359 LbH_Dynactin_5 Dynacti 98.7 1.1E-07 2.3E-12 79.9 10.9 71 296-366 43-126 (161)
148 PLN02694 serine O-acetyltransf 98.7 2.8E-08 6.1E-13 89.3 7.6 77 289-365 160-248 (294)
149 cd03359 LbH_Dynactin_5 Dynacti 98.7 8.6E-08 1.9E-12 80.4 10.1 71 295-365 21-107 (161)
150 cd04646 LbH_Dynactin_6 Dynacti 98.7 7E-08 1.5E-12 81.1 9.6 77 289-365 11-101 (164)
151 cd04650 LbH_FBP Ferripyochelin 98.7 1.2E-07 2.5E-12 78.9 10.7 72 296-367 40-116 (154)
152 PRK00892 lpxD UDP-3-O-[3-hydro 98.7 6.6E-08 1.4E-12 91.3 10.2 76 290-365 125-221 (343)
153 TIGR01852 lipid_A_lpxA acyl-[a 98.7 9E-08 2E-12 86.5 10.5 77 288-364 39-136 (254)
154 cd04645 LbH_gamma_CA_like Gamm 98.7 1.1E-07 2.4E-12 79.1 10.1 78 288-365 10-95 (153)
155 cd05635 LbH_unknown Uncharacte 98.7 1.3E-07 2.8E-12 72.6 9.5 63 294-358 10-73 (101)
156 PRK11132 cysE serine acetyltra 98.7 9.5E-08 2.1E-12 85.9 9.9 77 288-364 140-228 (273)
157 cd04180 UGPase_euk_like Eukary 98.7 5.7E-09 1.2E-13 94.5 2.1 59 10-73 2-76 (266)
158 TIGR03570 NeuD_NnaD sugar O-ac 98.7 1.9E-07 4.2E-12 81.1 11.6 76 290-365 94-171 (201)
159 PRK11830 dapD 2,3,4,5-tetrahyd 98.7 1E-07 2.3E-12 85.6 9.9 71 295-365 132-212 (272)
160 PRK10191 putative acyl transfe 98.7 1.4E-07 3.1E-12 77.1 9.8 73 293-365 45-128 (146)
161 PRK05289 UDP-N-acetylglucosami 98.7 1E-07 2.2E-12 86.4 9.6 79 288-366 7-99 (262)
162 PRK00892 lpxD UDP-3-O-[3-hydro 98.7 9.9E-08 2.2E-12 90.1 9.9 76 288-363 105-182 (343)
163 TIGR01173 glmU UDP-N-acetylglu 98.7 6E-08 1.3E-12 95.2 8.7 75 288-363 272-347 (451)
164 TIGR03308 phn_thr-fam phosphon 98.7 1.9E-07 4.2E-12 81.2 10.8 48 296-344 20-67 (204)
165 PLN02357 serine acetyltransfer 98.7 1.3E-07 2.8E-12 87.5 10.0 76 290-365 227-314 (360)
166 cd04649 LbH_THP_succinylT_puta 98.7 3.7E-07 8E-12 73.6 11.2 76 289-365 19-107 (147)
167 PRK13627 carnitine operon prot 98.7 1.7E-07 3.8E-12 80.8 9.9 71 296-366 50-125 (196)
168 PLN02739 serine acetyltransfer 98.7 1.2E-07 2.6E-12 87.0 9.3 76 289-364 205-292 (355)
169 cd00710 LbH_gamma_CA Gamma car 98.6 2.7E-07 5.9E-12 77.8 10.6 72 294-365 63-134 (167)
170 TIGR00965 dapD 2,3,4,5-tetrahy 98.6 2.1E-07 4.6E-12 82.9 10.2 63 303-365 131-203 (269)
171 PRK14355 glmU bifunctional N-a 98.6 1.3E-07 2.7E-12 93.2 9.7 73 288-361 279-352 (459)
172 PRK14356 glmU bifunctional N-a 98.6 7E-08 1.5E-12 94.9 7.8 72 290-362 282-354 (456)
173 PRK09451 glmU bifunctional N-a 98.6 1E-07 2.2E-12 93.8 8.9 75 292-366 262-336 (456)
174 cd00710 LbH_gamma_CA Gamma car 98.6 2.5E-07 5.5E-12 78.1 10.1 70 295-364 42-116 (167)
175 cd03354 LbH_SAT Serine acetylt 98.6 3.2E-07 7E-12 70.6 9.8 63 303-365 24-90 (101)
176 cd04649 LbH_THP_succinylT_puta 98.6 4.9E-07 1.1E-11 72.9 10.9 70 291-362 9-88 (147)
177 PRK14353 glmU bifunctional N-a 98.6 1.9E-07 4.2E-12 91.5 10.5 42 313-354 303-345 (446)
178 cd04647 LbH_MAT_like Maltose O 98.6 2.8E-07 6.1E-12 71.8 9.2 67 297-363 3-92 (109)
179 PRK12461 UDP-N-acetylglucosami 98.6 3E-07 6.5E-12 82.7 9.7 77 289-365 5-95 (255)
180 cd05825 LbH_wcaF_like wcaF-lik 98.6 4.9E-07 1.1E-11 70.3 9.7 69 296-364 4-91 (107)
181 cd03352 LbH_LpxD UDP-3-O-acyl- 98.6 5.3E-07 1.1E-11 78.8 10.9 52 294-345 18-70 (205)
182 COG0448 GlgC ADP-glucose pyrop 98.6 1.8E-07 4E-12 86.8 8.2 102 258-364 243-345 (393)
183 COG1207 GlmU N-acetylglucosami 98.6 9E-08 1.9E-12 89.1 6.2 75 288-363 279-354 (460)
184 PRK05293 glgC glucose-1-phosph 98.6 2.1E-07 4.5E-12 89.3 8.7 67 295-362 308-379 (380)
185 PRK14358 glmU bifunctional N-a 98.5 2.9E-07 6.4E-12 90.9 9.4 74 288-362 281-355 (481)
186 COG1043 LpxA Acyl-[acyl carrie 98.5 2.7E-07 5.9E-12 79.4 7.3 76 291-366 11-100 (260)
187 PRK14360 glmU bifunctional N-a 98.5 1.9E-07 4E-12 91.8 7.4 39 314-352 314-353 (450)
188 cd03357 LbH_MAT_GAT Maltose O- 98.5 7E-07 1.5E-11 75.5 9.8 73 293-365 60-154 (169)
189 PRK10092 maltose O-acetyltrans 98.5 8.1E-07 1.8E-11 75.8 10.1 72 293-364 71-164 (183)
190 PRK10191 putative acyl transfe 98.5 7.2E-07 1.6E-11 73.0 9.2 73 290-362 62-142 (146)
191 PRK11132 cysE serine acetyltra 98.5 6.9E-07 1.5E-11 80.4 9.9 74 293-366 139-224 (273)
192 cd03352 LbH_LpxD UDP-3-O-acyl- 98.5 8.1E-07 1.8E-11 77.6 10.1 63 289-351 7-71 (205)
193 TIGR02091 glgC glucose-1-phosp 98.5 6E-07 1.3E-11 85.6 10.1 67 296-364 278-344 (361)
194 PLN02474 UTP--glucose-1-phosph 98.5 1.4E-05 3.1E-10 77.1 19.2 182 7-196 78-309 (469)
195 PLN02694 serine O-acetyltransf 98.5 5.8E-07 1.2E-11 81.0 9.1 73 292-364 183-264 (294)
196 PTZ00339 UDP-N-acetylglucosami 98.5 7E-06 1.5E-10 79.9 16.9 181 7-195 105-350 (482)
197 cd00208 LbetaH Left-handed par 98.5 6.9E-07 1.5E-11 64.8 7.8 62 303-364 2-73 (78)
198 COG2171 DapD Tetrahydrodipicol 98.5 3.8E-07 8.1E-12 80.1 7.4 77 289-365 126-218 (271)
199 TIGR01172 cysE serine O-acetyl 98.5 1E-06 2.3E-11 73.8 9.7 72 294-365 60-143 (162)
200 cd04647 LbH_MAT_like Maltose O 98.5 1.3E-06 2.9E-11 67.9 9.6 52 295-346 21-92 (109)
201 TIGR02092 glgD glucose-1-phosp 98.5 5.3E-07 1.2E-11 86.2 8.6 64 298-364 275-338 (369)
202 PRK09527 lacA galactoside O-ac 98.5 1.7E-06 3.6E-11 74.9 10.5 71 294-364 74-166 (203)
203 PRK09677 putative lipopolysacc 98.5 1.3E-06 2.8E-11 75.4 9.8 71 295-365 65-166 (192)
204 cd03354 LbH_SAT Serine acetylt 98.4 1.8E-06 3.8E-11 66.4 9.3 75 292-366 5-85 (101)
205 PRK11830 dapD 2,3,4,5-tetrahyd 98.4 1.6E-06 3.5E-11 78.0 10.1 11 184-194 54-64 (272)
206 PLN02357 serine acetyltransfer 98.4 1.3E-06 2.8E-11 81.0 9.1 78 290-367 247-333 (360)
207 PRK10502 putative acyl transfe 98.4 1.8E-06 4E-11 73.8 9.3 70 295-364 71-159 (182)
208 TIGR01208 rmlA_long glucose-1- 98.4 1.3E-06 2.8E-11 83.0 9.3 63 290-359 249-316 (353)
209 PLN02739 serine acetyltransfer 98.4 1.2E-06 2.6E-11 80.5 8.4 73 290-362 226-307 (355)
210 PRK14354 glmU bifunctional N-a 98.4 1.1E-06 2.4E-11 86.5 8.7 66 291-358 279-345 (458)
211 PF02348 CTP_transf_3: Cytidyl 98.4 2E-06 4.3E-11 75.8 9.5 112 10-136 1-120 (217)
212 TIGR03536 DapD_gpp 2,3,4,5-tet 98.4 2.9E-06 6.3E-11 76.6 10.4 76 290-366 197-285 (341)
213 COG0663 PaaY Carbonic anhydras 98.4 3.8E-06 8.2E-11 69.7 10.1 76 291-366 19-108 (176)
214 PRK10502 putative acyl transfe 98.3 2.4E-06 5.3E-11 73.0 8.5 32 314-345 72-106 (182)
215 COG1045 CysE Serine acetyltran 98.3 2.8E-06 6E-11 71.3 8.3 76 289-364 67-154 (194)
216 TIGR03535 DapD_actino 2,3,4,5- 98.3 5.2E-06 1.1E-10 74.6 10.5 55 310-365 196-259 (319)
217 TIGR03536 DapD_gpp 2,3,4,5-tet 98.3 3.6E-06 7.7E-11 76.0 9.3 74 289-362 178-265 (341)
218 KOG1460 GDP-mannose pyrophosph 98.3 1.6E-06 3.4E-11 76.9 6.9 82 287-369 298-393 (407)
219 PRK14352 glmU bifunctional N-a 98.3 2.9E-06 6.4E-11 84.0 9.5 35 329-363 356-390 (482)
220 PRK14359 glmU bifunctional N-a 98.3 2.8E-06 6E-11 83.0 8.4 44 321-364 333-384 (430)
221 PRK00844 glgC glucose-1-phosph 98.2 4.8E-06 1E-10 80.6 9.7 52 312-364 314-365 (407)
222 PRK14357 glmU bifunctional N-a 98.2 3.2E-06 7E-11 83.0 8.3 31 291-322 269-299 (448)
223 COG1208 GCD1 Nucleoside-diphos 98.2 4.8E-06 1E-10 79.0 9.0 69 290-365 274-342 (358)
224 PRK02862 glgC glucose-1-phosph 98.2 3.9E-06 8.5E-11 81.8 8.5 70 292-364 289-377 (429)
225 COG1043 LpxA Acyl-[acyl carrie 98.2 3.2E-06 6.9E-11 72.9 6.7 62 291-363 5-67 (260)
226 cd00897 UGPase_euk Eukaryotic 98.2 9.1E-05 2E-09 67.9 16.2 182 7-195 2-232 (300)
227 PRK00725 glgC glucose-1-phosph 98.2 4.1E-06 8.9E-11 81.5 7.6 51 313-364 327-377 (425)
228 PRK10092 maltose O-acetyltrans 98.2 1.1E-05 2.4E-10 68.9 9.2 71 296-368 94-178 (183)
229 cd03349 LbH_XAT Xenobiotic acy 98.1 2.2E-05 4.7E-10 64.5 9.5 37 329-365 72-109 (145)
230 cd03357 LbH_MAT_GAT Maltose O- 98.1 1.7E-05 3.6E-10 67.1 8.7 53 295-347 82-153 (169)
231 PRK09527 lacA galactoside O-ac 98.1 2.7E-05 5.8E-10 67.5 10.0 15 296-310 96-110 (203)
232 PRK09677 putative lipopolysacc 98.1 2.8E-05 6E-10 67.2 9.8 51 296-346 44-101 (192)
233 PLN02241 glucose-1-phosphate a 98.0 2.2E-05 4.7E-10 76.8 9.3 77 289-366 326-434 (436)
234 cd05825 LbH_wcaF_like wcaF-lik 98.0 3.4E-05 7.3E-10 59.9 8.5 55 294-348 22-92 (107)
235 TIGR03535 DapD_actino 2,3,4,5- 98.0 5.8E-05 1.3E-09 67.9 9.7 68 292-362 162-240 (319)
236 KOG1322 GDP-mannose pyrophosph 97.9 1.1E-05 2.3E-10 72.9 4.1 78 289-367 276-354 (371)
237 COG1861 SpsF Spore coat polysa 97.9 7.7E-05 1.7E-09 63.8 8.7 111 9-137 3-124 (241)
238 KOG3121 Dynactin, subunit p25 97.9 2E-05 4.3E-10 62.2 4.6 51 296-346 34-100 (184)
239 PF07959 Fucokinase: L-fucokin 97.9 0.00011 2.4E-09 70.9 10.6 84 109-196 55-158 (414)
240 PRK00576 molybdopterin-guanine 97.8 7E-05 1.5E-09 63.9 8.0 91 31-132 3-102 (178)
241 KOG4042 Dynactin subunit p27/W 97.8 2.3E-05 5.1E-10 62.3 3.5 80 290-369 21-135 (190)
242 PRK13412 fkp bifunctional fuco 97.8 0.00011 2.4E-09 76.8 9.4 217 109-352 154-394 (974)
243 COG1045 CysE Serine acetyltran 97.8 0.00011 2.3E-09 62.0 7.5 76 289-364 87-171 (194)
244 PF01704 UDPGP: UTP--glucose-1 97.7 0.0019 4.1E-08 62.3 16.9 182 6-196 54-288 (420)
245 TIGR02353 NRPS_term_dom non-ri 97.7 0.0001 2.2E-09 75.8 8.8 34 331-364 161-195 (695)
246 TIGR02353 NRPS_term_dom non-ri 97.7 0.00015 3.2E-09 74.7 9.8 71 295-365 597-681 (695)
247 COG2171 DapD Tetrahydrodipicol 97.7 9.6E-05 2.1E-09 65.2 7.0 23 334-356 198-221 (271)
248 PF00132 Hexapep: Bacterial tr 97.6 4.1E-05 8.9E-10 46.6 2.3 7 315-321 21-27 (36)
249 COG4284 UDP-glucose pyrophosph 97.6 0.002 4.4E-08 61.6 14.5 179 6-192 103-335 (472)
250 KOG4750 Serine O-acetyltransfe 97.6 0.00013 2.8E-09 62.3 5.4 67 297-363 150-234 (269)
251 PF00132 Hexapep: Bacterial tr 97.5 7.2E-05 1.6E-09 45.5 2.6 31 315-345 3-34 (36)
252 cd03349 LbH_XAT Xenobiotic acy 97.5 0.00062 1.3E-08 55.9 8.5 35 313-347 73-108 (145)
253 PLN02435 probable UDP-N-acetyl 97.5 0.0034 7.4E-08 61.3 14.4 183 7-196 115-364 (493)
254 PF14602 Hexapep_2: Hexapeptid 97.4 0.0002 4.3E-09 42.9 3.5 30 315-345 3-32 (34)
255 KOG3121 Dynactin, subunit p25 97.3 0.00027 5.8E-09 55.9 3.8 30 296-326 85-114 (184)
256 COG0110 WbbJ Acetyltransferase 97.1 0.0028 6E-08 54.5 8.7 35 330-364 124-159 (190)
257 PF14602 Hexapep_2: Hexapeptid 97.1 0.00074 1.6E-08 40.4 3.4 29 333-362 4-32 (34)
258 COG4801 Predicted acyltransfer 97.0 0.0015 3.3E-08 56.1 5.8 67 290-363 17-84 (277)
259 cd06424 UGGPase UGGPase cataly 97.0 0.016 3.5E-07 53.5 12.8 176 10-193 2-249 (315)
260 COG0110 WbbJ Acetyltransferase 96.6 0.0095 2.1E-07 51.1 7.8 48 314-361 125-173 (190)
261 PLN02830 UDP-sugar pyrophospho 96.5 0.041 8.9E-07 55.5 12.8 131 7-144 127-312 (615)
262 COG4801 Predicted acyltransfer 96.5 0.0089 1.9E-07 51.6 6.9 69 297-366 35-105 (277)
263 KOG2638 UDP-glucose pyrophosph 96.4 0.29 6.4E-06 46.2 16.3 131 6-143 101-274 (498)
264 KOG4042 Dynactin subunit p27/W 96.3 0.013 2.8E-07 47.0 6.4 18 294-311 46-63 (190)
265 KOG4750 Serine O-acetyltransfe 95.2 0.052 1.1E-06 46.8 5.9 58 290-347 169-235 (269)
266 cd00761 Glyco_tranf_GTA_type G 95.2 0.23 5E-06 39.5 9.7 87 41-131 9-103 (156)
267 PF00535 Glycos_transf_2: Glyc 95.1 0.15 3.3E-06 41.6 8.7 104 36-143 4-116 (169)
268 TIGR03552 F420_cofC 2-phospho- 94.7 0.082 1.8E-06 45.5 6.2 81 41-131 30-117 (195)
269 PF07959 Fucokinase: L-fucokin 94.3 0.086 1.9E-06 51.1 5.8 49 303-352 275-323 (414)
270 TIGR01556 rhamnosyltran L-rham 93.0 2 4.4E-05 39.0 12.4 56 79-134 46-102 (281)
271 cd06423 CESA_like CESA_like is 92.0 1.1 2.4E-05 36.4 8.6 96 36-134 3-107 (180)
272 cd04186 GT_2_like_c Subfamily 91.6 1.7 3.8E-05 35.3 9.3 91 37-134 4-103 (166)
273 cd04195 GT2_AmsE_like GT2_AmsE 91.5 1.4 3.1E-05 37.5 8.9 93 36-133 4-108 (201)
274 cd06427 CESA_like_2 CESA_like_ 89.6 3.1 6.6E-05 36.8 9.6 61 78-141 59-120 (241)
275 cd06439 CESA_like_1 CESA_like_ 89.6 3.7 8.1E-05 36.3 10.2 93 34-132 33-136 (251)
276 cd04185 GT_2_like_b Subfamily 87.3 3.8 8.3E-05 34.9 8.4 88 42-131 10-105 (202)
277 cd04196 GT_2_like_d Subfamily 87.0 3.1 6.6E-05 35.6 7.7 51 79-132 55-106 (214)
278 cd04188 DPG_synthase DPG_synth 86.6 3.5 7.7E-05 35.5 7.9 59 80-141 59-118 (211)
279 cd02526 GT2_RfbF_like RfbF is 86.5 18 0.00039 31.5 12.5 49 79-127 48-97 (237)
280 cd06442 DPM1_like DPM1_like re 86.4 4.9 0.00011 34.7 8.7 58 80-140 55-113 (224)
281 KOG2978 Dolichol-phosphate man 86.2 7.8 0.00017 32.9 9.0 96 42-142 19-125 (238)
282 PF13641 Glyco_tranf_2_3: Glyc 85.7 1.6 3.5E-05 38.0 5.3 37 91-130 74-111 (228)
283 cd04179 DPM_DPG-synthase_like 85.6 4.5 9.8E-05 33.7 7.9 58 81-141 57-115 (185)
284 cd02510 pp-GalNAc-T pp-GalNAc- 84.7 6.6 0.00014 36.1 9.1 54 79-135 59-113 (299)
285 cd02525 Succinoglycan_BP_ExoA 84.7 6.3 0.00014 34.5 8.7 81 54-139 34-115 (249)
286 PRK13412 fkp bifunctional fuco 84.3 1.6 3.5E-05 46.5 5.2 52 313-364 336-389 (974)
287 cd02520 Glucosylceramide_synth 83.8 8.1 0.00018 32.8 8.7 35 93-130 76-111 (196)
288 KOG2388 UDP-N-acetylglucosamin 83.8 2.2 4.8E-05 41.3 5.4 40 7-51 96-138 (477)
289 PRK11204 N-glycosyltransferase 83.7 5.5 0.00012 38.6 8.5 96 35-134 59-163 (420)
290 cd04187 DPM1_like_bac Bacteria 83.7 6.8 0.00015 32.6 8.1 58 80-141 57-115 (181)
291 PLN02726 dolichyl-phosphate be 83.4 5.1 0.00011 35.5 7.6 58 80-140 70-128 (243)
292 cd06435 CESA_NdvC_like NdvC_li 82.8 5.1 0.00011 35.1 7.3 52 79-131 57-110 (236)
293 COG1216 Predicted glycosyltran 82.5 28 0.00062 32.0 12.4 63 79-141 57-120 (305)
294 PRK10714 undecaprenyl phosphat 80.7 8.2 0.00018 36.1 8.1 56 80-139 67-123 (325)
295 cd06433 GT_2_WfgS_like WfgS an 80.3 11 0.00023 31.6 8.2 85 42-133 11-103 (202)
296 PRK10073 putative glycosyl tra 80.3 11 0.00024 35.3 8.9 57 80-140 63-120 (328)
297 cd04192 GT_2_like_e Subfamily 80.1 10 0.00022 32.7 8.2 45 88-135 67-112 (229)
298 cd06421 CESA_CelA_like CESA_Ce 77.8 22 0.00048 30.7 9.6 74 54-132 36-111 (234)
299 PRK14583 hmsR N-glycosyltransf 77.7 10 0.00023 37.1 8.1 97 34-134 79-184 (444)
300 cd06420 GT2_Chondriotin_Pol_N 77.5 11 0.00023 31.3 7.3 86 42-130 10-104 (182)
301 cd04184 GT2_RfbC_Mx_like Myxoc 76.6 17 0.00036 30.7 8.3 50 80-132 60-110 (202)
302 cd06438 EpsO_like EpsO protein 76.5 37 0.0008 28.3 10.3 47 86-132 59-108 (183)
303 TIGR03472 HpnI hopanoid biosyn 75.3 10 0.00022 36.2 7.2 92 35-131 46-152 (373)
304 TIGR03111 glyc2_xrt_Gpos1 puta 74.8 19 0.0004 35.3 9.0 44 88-134 116-160 (439)
305 cd06434 GT2_HAS Hyaluronan syn 73.5 26 0.00057 30.4 9.0 41 88-131 62-103 (235)
306 PRK10018 putative glycosyl tra 73.4 29 0.00062 31.7 9.3 51 79-132 61-112 (279)
307 PF07302 AroM: AroM protein; 71.4 29 0.00064 30.4 8.3 106 11-129 91-199 (221)
308 PF10111 Glyco_tranf_2_2: Glyc 71.1 30 0.00066 31.5 9.0 38 88-128 73-111 (281)
309 COG1215 Glycosyltransferases, 70.0 17 0.00037 35.2 7.5 98 35-135 59-167 (439)
310 PRK11498 bcsA cellulose syntha 67.5 28 0.0006 37.2 8.7 99 35-143 265-376 (852)
311 PRK10063 putative glycosyl tra 62.6 77 0.0017 28.2 9.7 50 80-133 60-109 (248)
312 TIGR03469 HonB hopene-associat 61.7 56 0.0012 31.3 9.2 49 89-137 114-165 (384)
313 PF01983 CofC: Guanylyl transf 59.1 13 0.00029 32.5 3.9 103 9-130 1-113 (217)
314 cd02522 GT_2_like_a GT_2_like_ 58.3 52 0.0011 28.1 7.7 43 89-134 58-101 (221)
315 COG1920 Predicted nucleotidylt 57.5 33 0.00072 29.3 5.8 103 9-132 1-113 (210)
316 cd06913 beta3GnTL1_like Beta 1 54.1 63 0.0014 27.7 7.5 44 88-134 69-113 (219)
317 PTZ00260 dolichyl-phosphate be 53.9 59 0.0013 30.5 7.7 59 80-141 139-201 (333)
318 TIGR03030 CelA cellulose synth 53.4 71 0.0015 33.6 8.8 58 80-141 204-263 (713)
319 cd06436 GlcNAc-1-P_transferase 48.6 1.6E+02 0.0035 24.6 9.0 43 88-130 63-114 (191)
320 cd02511 Beta4Glucosyltransfera 46.9 1.4E+02 0.0029 26.0 8.5 45 87-134 55-100 (229)
321 PF04519 Bactofilin: Polymer-f 45.9 30 0.00065 26.0 3.6 68 295-365 30-98 (101)
322 cd06437 CESA_CaSu_A2 Cellulose 44.4 1.3E+02 0.0029 25.9 8.1 50 78-130 61-112 (232)
323 PF14134 DUF4301: Domain of un 39.9 68 0.0015 31.7 5.7 91 30-123 165-299 (513)
324 PF01762 Galactosyl_T: Galacto 38.9 2.4E+02 0.0052 23.8 10.2 25 173-197 142-166 (195)
325 cd04191 Glucan_BSP_ModH Glucan 38.7 2.7E+02 0.0058 24.9 9.2 63 78-142 67-131 (254)
326 KOG2862 Alanine-glyoxylate ami 36.0 3.5E+02 0.0076 25.3 9.2 116 74-197 112-229 (385)
327 KOG2638 UDP-glucose pyrophosph 35.7 36 0.00077 32.7 3.0 46 312-358 452-497 (498)
328 PRK13915 putative glucosyl-3-p 31.3 1.9E+02 0.0041 26.7 7.1 51 88-141 100-153 (306)
329 PRK10481 hypothetical protein; 30.5 3.8E+02 0.0083 23.6 10.0 83 43-129 118-203 (224)
330 PRK14716 bacteriophage N4 adso 30.3 3.3E+02 0.0071 27.3 9.0 48 83-130 129-182 (504)
331 KOG2977 Glycosyltransferase [G 24.4 3.5E+02 0.0076 24.9 7.1 87 42-131 84-183 (323)
332 PRK11557 putative DNA-binding 24.1 4.6E+02 0.0099 23.5 8.3 80 54-142 131-210 (278)
333 PF04519 Bactofilin: Polymer-f 23.3 82 0.0018 23.6 2.7 44 319-364 36-80 (101)
334 COG1664 CcmA Integral membrane 23.0 2E+02 0.0044 23.4 5.1 29 335-363 89-117 (146)
335 PF05679 CHGN: Chondroitin N-a 21.0 3.5E+02 0.0075 27.1 7.3 74 67-145 302-377 (499)
No 1
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-58 Score=398.62 Aligned_cols=355 Identities=65% Similarity=1.100 Sum_probs=322.1
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCeeEE
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (372)
+.+||||.||+++||||+||+.+.||||+|++|+|||+|.|+++++ |++++.++++.+.+|+......+.+++.
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvr 81 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVR 81 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchh
Confidence 5799999999999999999999999999999999999999999988 9999999999999999988788889999
Q ss_pred EecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCC
Q 017417 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (372)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~ 161 (372)
|..++.+.|+++.++.-++.+-..+++.+++++||.-+...+++|+++|++.+..++++.+++.++....||.+.-|+.+
T Consensus 82 YL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t 161 (407)
T KOG1460|consen 82 YLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPST 161 (407)
T ss_pred hhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCc
Confidence 99999999999999999999877778899999999999999999999999999999999999998899999999999889
Q ss_pred CceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCCC
Q 017417 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (372)
Q Consensus 162 ~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~ 241 (372)
++|+++.|||...-++.+++|+|+|++++|+.+.+...++.+.. .++.++-.+ +..+.||..+++|+|..++.+
T Consensus 162 ~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~--~~~~~~~~l----~~g~~d~irLeqDvlspLag~ 235 (407)
T KOG1460|consen 162 GEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLL--EVEKDLPLL----QPGPADFIRLEQDVLSPLAGS 235 (407)
T ss_pred CceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhh--hhhhccccc----CCCccceEEeechhhhhhcCC
Confidence 99999999999999999999999999999999998766543311 112222222 344789999999999999999
Q ss_pred ceEEEeecchhhhhcCCccccccchHHHHhhccccCCccccCCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCCE
Q 017417 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANAR 321 (372)
Q Consensus 242 ~~v~~~~~~~~w~~i~t~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~ 321 (372)
+++|+|..+++|.+|.|+..-+.|+++|++.++.+++..+..+.... +++.++++|+|.+++.++++|++|+.||++++
T Consensus 236 k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~-a~IigdVyIhPsakvhptAkiGPNVSIga~vr 314 (407)
T KOG1460|consen 236 KQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQ-AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVR 314 (407)
T ss_pred CceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCC-ceEEeeeEEcCcceeCCccccCCCceecCCce
Confidence 99999999999999999999999999999999999888876543323 67899999999999999999999999999999
Q ss_pred ECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCCCCcC
Q 017417 322 IGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQASSKYN 369 (372)
Q Consensus 322 i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~ 369 (372)
||+|+++++|||.++|.|.+++++-+|+||-++.||..+++.+.+-.|
T Consensus 315 vg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~ 362 (407)
T KOG1460|consen 315 VGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEP 362 (407)
T ss_pred ecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccccccc
Confidence 999999999999999999999999999999999999999998765443
No 2
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2e-52 Score=367.58 Aligned_cols=318 Identities=37% Similarity=0.648 Sum_probs=268.0
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHH-HhhccCCCCeeE
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALY-VSSISNELRIPV 80 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~-~~~~~~~~~~~i 80 (372)
+.|+|+||-|| .|||++|||.++|||++|++++|||+|++++|.+ |++.+++..+++..+ .+.+...+++++
T Consensus 8 ~~vkaiILvGG--~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei 85 (371)
T KOG1322|consen 8 QSVKAIILVGG--YGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEI 85 (371)
T ss_pred cceeEEEEecC--CCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEE
Confidence 68999999999 9999999999999999999999999999999988 888888777755544 455667788999
Q ss_pred EEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCC
Q 017417 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (372)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~ 160 (372)
.+..|.++.|+++.+..+++++-..+..+|+|+++|++++.++.+|+++|+++++++|++++++ ++++.||.+.+|++
T Consensus 86 ~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v--depSkyGvv~~d~~ 163 (371)
T KOG1322|consen 86 LASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV--DEPSKYGVVVIDED 163 (371)
T ss_pred EEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec--cCccccceEEEecC
Confidence 9988888999999999999998655433799999999999999999999999999999999998 45999999999987
Q ss_pred CCceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCC
Q 017417 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (372)
Q Consensus 161 ~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~ 240 (372)
+|+|.+|.|||....++-+++|+|+|+|++++.+... +.. ++.++++.+++
T Consensus 164 ~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~--------------------------ptS---iekEifP~~a~ 214 (371)
T KOG1322|consen 164 TGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILLR--------------------------PTS---IEKEIFPAMAE 214 (371)
T ss_pred CCceeEehhCchhhhhccccceEEEECHHHHhHhhhc--------------------------ccc---hhhhhhhhhhh
Confidence 8999999999998888899999999999999988732 122 34799999999
Q ss_pred CceEEEeecchhhhhcCCccccccchHHHHhhccc-cCCccccCCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCC
Q 017417 241 KKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRL-TSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISAN 319 (372)
Q Consensus 241 ~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~ 319 (372)
..++++|.++|||.||++|.||+++-.+|++..+. ++++++ +.+.+.+++.+.+-+.+|++|.|++||+||++
T Consensus 215 ~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~------p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r 288 (371)
T KOG1322|consen 215 EHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLL------PGSKIVGNVLVDSIASIGENCSIGPNVVIGPR 288 (371)
T ss_pred cCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCcccc------CCccccccEeeccccccCCccEECCCceECCC
Confidence 99999999999999999999999999999877654 333333 23566778888888888899999988999999
Q ss_pred CEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEc
Q 017417 320 ARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 320 ~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 363 (372)
|+|++|+.|.+|.|+.++.++.++.|..++++.++.||.++.|.
T Consensus 289 ~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id 332 (371)
T KOG1322|consen 289 VRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARID 332 (371)
T ss_pred cEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEe
Confidence 99999999988888777666666665555555555555555443
No 3
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-50 Score=369.49 Aligned_cols=332 Identities=25% Similarity=0.419 Sum_probs=268.4
Q ss_pred CCCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCc-chhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCe
Q 017417 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI 78 (372)
Q Consensus 5 ~~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~ 78 (372)
|.+++.|+||||| .|+||.|||+.++||-+|++|| .||+++|+++.+ |.|++++....+.+|++.. ..|+.
T Consensus 2 ~~~~~laiILaGg--~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G-~~w~l 78 (393)
T COG0448 2 MKKNVLAIILAGG--RGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRG-WPWDL 78 (393)
T ss_pred CccceEEEEEcCC--CCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCC-Ccccc
Confidence 5678999999999 9999999999999999999999 999999999988 9999999999999999874 44432
Q ss_pred -----eEEEec-------CCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCC
Q 017417 79 -----PVRYLR-------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSA 146 (372)
Q Consensus 79 -----~i~~~~-------~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~ 146 (372)
-+.... +.+..|+++++++.+.++...++++++++.||++++.|+++|++.|.+.++++|+++.+++.
T Consensus 79 ~~~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~ 158 (393)
T COG0448 79 DRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPR 158 (393)
T ss_pred ccccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECCh
Confidence 122222 23678999999999999987778999999999999999999999999999999999999999
Q ss_pred cccccceEEEEcCCCCceeEeeecCCC-cccC-ceeeeEEEeCHhhHHHh-hhcccccchhhhhhccchhhhhhhccccc
Q 017417 147 ESASQFGELVADPDTNELLHYTEKPET-FVSD-LINCGVYVFTPDIFNAI-QGVSSQRKDRENLRRVSSFEALQSATRNL 223 (372)
Q Consensus 147 ~~~~~~~~v~~~~~~~~v~~i~ek~~~-~~~~-~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (372)
++++.||.+.+|+ +++|..|.|||.. +..+ ++++|+|+|++++|..+ .+..+. ...
T Consensus 159 ~eas~fGim~~D~-~~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~--------------------~~~ 217 (393)
T COG0448 159 EEASRFGVMNVDE-NGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKD--------------------PNS 217 (393)
T ss_pred HhhhhcCceEECC-CCCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcc--------------------cCc
Confidence 9999999999997 7999999999976 4444 79999999997766654 433211 011
Q ss_pred ccccccccccccccCCCCceEEEeecchhhhhcCCccccccchHHHHhhccc---cCCc--cccCCCCCCCcEE-----c
Q 017417 224 TTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRL---TSPN--LLASGDGTKNATI-----I 293 (372)
Q Consensus 224 ~~~~~~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~~~~~~---~~~~--~~~~~~~~~~~~~-----~ 293 (372)
..||. .|+++.+...+++++|+++|||.+|+|.+.|.+||.-++..-.. ..+. ++......+.+.. .
T Consensus 218 ~~Dfg---kdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v 294 (393)
T COG0448 218 SHDFG---KDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV 294 (393)
T ss_pred cccch---HHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceE
Confidence 34553 79999988888899999999999999999999998776651111 0111 0000000111122 2
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCCC
Q 017417 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQASS 366 (372)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 366 (372)
.++.++.||.|.. .|. ||+|+++++|+++|+|.+|+||++|.||+||+|+++||+++|+|++|+.|.+.+
T Consensus 295 ~nSLv~~GciI~G--~V~-nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~~ 364 (393)
T COG0448 295 SNSLVAGGCIISG--TVE-NSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGDK 364 (393)
T ss_pred eeeeeeCCeEEEe--EEE-eeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCCc
Confidence 2445555665554 333 999999999999999999999999999999999999999999999999999885
No 4
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-50 Score=375.33 Aligned_cols=314 Identities=35% Similarity=0.569 Sum_probs=266.5
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEE
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
.|+||||||| .||||+|+|.++||||+||+|||||+|+|++|.. ++++..+..+.+.+|+++. ..++.++.+
T Consensus 1 ~mkavILagG--~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~y 77 (358)
T COG1208 1 PMKAVILAGG--YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDG-EGLGVRITY 77 (358)
T ss_pred CceEEEEeCC--ccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcc-cccCCceEE
Confidence 4899999999 9999999999999999999999999999999977 7777777788899999874 456788999
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCC
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~ 162 (372)
+.+..+.||+++++++.+++.. ++|++++||.+++.++.+++++|++..+..+++...+. .+..||.+..+.+++
T Consensus 78 ~~e~~~lGTag~l~~a~~~l~~---~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~--~~~~~Gvv~~~~~~~ 152 (358)
T COG1208 78 VVEKEPLGTAGALKNALDLLGG---DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL--DPSEFGVVETDDGDG 152 (358)
T ss_pred EecCCcCccHHHHHHHHHhcCC---CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC--CCCcCceEEecCCCc
Confidence 9998899999999999999975 36999999999999999999999998777888877764 347899888875347
Q ss_pred ceeEeeecC--CCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCC
Q 017417 163 ELLHYTEKP--ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (372)
Q Consensus 163 ~v~~i~ek~--~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~ 240 (372)
+|.+|.||| ....++++++|+|+|+|++|+.+.... ..+|. .|+++.+.+
T Consensus 153 ~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~-------------------------~~~~~---~~~~~~l~~ 204 (358)
T COG1208 153 RVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGE-------------------------RFDFE---EELLPALAA 204 (358)
T ss_pred eEEEEEecCCCCCCCCceEEeEEEEECHHHhhhcccCC-------------------------cccch---hhHHHHHHh
Confidence 999999998 356789999999999999999554321 22332 468888888
Q ss_pred Cce-EEEeecchhhhhcCCccccccchHHHHhhccccCCccccCCC--CCCCcEEcCCcEECCCCEECCCCEECCCcEEC
Q 017417 241 KKQ-LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGD--GTKNATIIGDVYVHPSAKIHPTAKIGPNVSIS 317 (372)
Q Consensus 241 ~~~-v~~~~~~~~w~~i~t~~d~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig 317 (372)
++. +++|.++|+|.++++|+||.+|+..+................ ... +.+.++++|++++.|++++.++++++||
T Consensus 205 ~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig 283 (358)
T COG1208 205 KGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIG 283 (358)
T ss_pred CCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEEC
Confidence 876 999999999999999999999999887543221111110000 112 6778999999999999999999999999
Q ss_pred CCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECC
Q 017417 318 ANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGR 358 (372)
Q Consensus 318 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~ 358 (372)
++|+|+.++.|.+|+|+++|.|++++.|.+|+|+.+|.||.
T Consensus 284 ~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 284 EGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 99999999999999999999999999999999999999985
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.7e-48 Score=373.94 Aligned_cols=333 Identities=24% Similarity=0.382 Sum_probs=260.6
Q ss_pred CCCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCc-chhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCe
Q 017417 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI 78 (372)
Q Consensus 5 ~~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~ 78 (372)
|+++++||||||| +|+||+|||.++||||+||+|| |||+|+|++|.+ |+|++++..+++.+|+.......+.
T Consensus 2 ~~~~~~avILAaG--~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~ 79 (407)
T PRK00844 2 AMPKVLAIVLAGG--EGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGL 79 (407)
T ss_pred CCCceEEEEECCC--CCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcccc
Confidence 5678999999999 9999999999999999999999 999999999987 7888788888999999742111111
Q ss_pred eEEEe---cCC------cccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCccc
Q 017417 79 PVRYL---RED------KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESA 149 (372)
Q Consensus 79 ~i~~~---~~~------~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~ 149 (372)
.+.++ .++ .+.|++++++++++++.++.+++|+|++||++++.++.++++.|++.++++++++...+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~ 159 (407)
T PRK00844 80 LGNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEA 159 (407)
T ss_pred CCCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHc
Confidence 12222 211 258999999999999975434579999999999999999999999888889999887655677
Q ss_pred ccceEEEEcCCCCceeEeeecCCCcc-------cCceeeeEEEeCHhhH-HHhhhcccccchhhhhhccchhhhhhhccc
Q 017417 150 SQFGELVADPDTNELLHYTEKPETFV-------SDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATR 221 (372)
Q Consensus 150 ~~~~~v~~~~~~~~v~~i~ek~~~~~-------~~~~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (372)
..||.+.+|+ +++|..|.|||..+. ..++++|+|+|++++| +.|.+....
T Consensus 160 ~~~Gvv~~d~-~g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~--------------------- 217 (407)
T PRK00844 160 SAFGVIEVDP-DGRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAAD--------------------- 217 (407)
T ss_pred ccCCEEEECC-CCCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcC---------------------
Confidence 8899999986 689999999985322 4689999999999986 556542111
Q ss_pred ccccccccccccccccCCCCceEEEeec------------chhhhhcCCccccccchHHHHhhcccc---CCcc--c-cC
Q 017417 222 NLTTDFVRLDQDILSPLAGKKQLYTYET------------MDFWEQIKTPGMSLKCSGLYLAQFRLT---SPNL--L-AS 283 (372)
Q Consensus 222 ~~~~~~~~~~~d~l~~~~~~~~v~~~~~------------~~~w~~i~t~~d~~~a~~~~~~~~~~~---~~~~--~-~~ 283 (372)
+...+.+..|+++.+.+++++++|.+ +|||.|+++|++|++|+..++...... .+.. . ..
T Consensus 218 --~~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~ 295 (407)
T PRK00844 218 --EDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSS 295 (407)
T ss_pred --CcccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccC
Confidence 01111223688988888889999965 699999999999999998887532110 0000 0 00
Q ss_pred CCCCCC--------cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCE
Q 017417 284 GDGTKN--------ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSS 355 (372)
Q Consensus 284 ~~~~~~--------~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ 355 (372)
....+. ..+.++++|+++|.|+ ++.|. +|+||++|+|+++|+|.+|+|+++|+|+++|+|.+|+|+++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~ 373 (407)
T PRK00844 296 PNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVV 373 (407)
T ss_pred CCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCE
Confidence 000011 1134568899999998 89897 8999999999999999999999999999999999999999999
Q ss_pred ECCCcEEcCC
Q 017417 356 IGRWSRVQAS 365 (372)
Q Consensus 356 i~~~~~i~~~ 365 (372)
|++++.|.+.
T Consensus 374 i~~~~~i~~~ 383 (407)
T PRK00844 374 VPPGATIGVD 383 (407)
T ss_pred ECCCCEECCC
Confidence 9999999763
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=9e-48 Score=368.26 Aligned_cols=334 Identities=23% Similarity=0.378 Sum_probs=257.2
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCc-chhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCe--
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI-- 78 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~-- 78 (372)
++|+||||||| +||||+|+|..+||||+||+|+ |||+|+|++|.+ |+|++++..+++.+|+++. ..|+.
T Consensus 2 ~~m~avILAaG--~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~ 78 (380)
T PRK05293 2 KEMLAMILAGG--QGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG-SPWDLDR 78 (380)
T ss_pred CcEEEEEECCC--CCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC-CcccccC
Confidence 57999999999 9999999999999999999999 899999999987 7777777788899999752 33432
Q ss_pred -----eEE--EecCCc---ccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcc
Q 017417 79 -----PVR--YLREDK---PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAES 148 (372)
Q Consensus 79 -----~i~--~~~~~~---~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~ 148 (372)
.+. +..+.. +.|+++|+++++++++...+++|+|++||.+++.++.++++.|++.++++++++...+.++
T Consensus 79 ~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~ 158 (380)
T PRK05293 79 INGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE 158 (380)
T ss_pred CCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhh
Confidence 222 333332 4899999999999996432357999999999999999999999888888888887765567
Q ss_pred cccceEEEEcCCCCceeEeeecCCCcccCceeeeEEEeCHhhHHHh-hhcccccchhhhhhccchhhhhhhccccccccc
Q 017417 149 ASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAI-QGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (372)
Q Consensus 149 ~~~~~~v~~~~~~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (372)
+.+||.+.++. +++|..+.|||..+..+++++|+|+|++++|..+ .+......+ ..+|
T Consensus 159 ~~~yG~v~~d~-~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~--------------------~~~~ 217 (380)
T PRK05293 159 ASRFGIMNTDE-NMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNS--------------------SHDF 217 (380)
T ss_pred ccccCEEEECC-CCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCc--------------------hhhh
Confidence 88999998885 5899999999976667899999999999988654 322111000 1122
Q ss_pred ccccccccccCCCC-ceEEEeecchhhhhcCCccccccchHHHHhhccccCCccccC------CCC-CCCcEEcCCcEEC
Q 017417 228 VRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLAS------GDG-TKNATIIGDVYVH 299 (372)
Q Consensus 228 ~~~~~d~l~~~~~~-~~v~~~~~~~~w~~i~t~~d~~~a~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~i~ 299 (372)
..|+++.++++ .++++|..+++|.++++|++|.+|+..++...... .++.. ... .....+++++.|
T Consensus 218 ---~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i- 291 (380)
T PRK05293 218 ---GKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPL--NLFDRNWRIYSVNPNLPPQYIAENAKV- 291 (380)
T ss_pred ---HHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchh--hhcCCCCceecCCcCCCCCEECCCCEE-
Confidence 26888877654 68999999999999999999999987665432111 11100 000 112233333333
Q ss_pred CCCEECCCCEECC---CcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCCCCcCC
Q 017417 300 PSAKIHPTAKIGP---NVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQASSKYNY 370 (372)
Q Consensus 300 ~~~~i~~~~~i~~---~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~ 370 (372)
.++.|+++|+|.+ +|+||++|+|+++|+|.+|+|+++|.|+++|.|.+|+|++++.|+.++.+.+++..|.
T Consensus 292 ~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~ 365 (380)
T PRK05293 292 KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVIT 365 (380)
T ss_pred ecCEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeE
Confidence 2345566666642 7899999999999999999999999999999999999999999999999999877553
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.7e-46 Score=362.63 Aligned_cols=336 Identities=19% Similarity=0.304 Sum_probs=261.3
Q ss_pred CCCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcc-hhhhhHhhcce-----EEEEcccchHHHHHHHhhccC----
Q 017417 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQP-MVHHPISACKR-----IYLVGFYEEREFALYVSSISN---- 74 (372)
Q Consensus 5 ~~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~p-li~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~---- 74 (372)
|.++++||||||| +|+||+|+|..+||||+|++|+| ||+|+|+++.+ |+|++++..+.+.+|+++...
T Consensus 12 ~~~~~~aVILAaG--~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~ 89 (425)
T PRK00725 12 LTRDTLALILAGG--RGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFRE 89 (425)
T ss_pred hhcceEEEEECCC--CCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhccccc
Confidence 4467999999999 99999999999999999999996 99999999987 778877888889999975211
Q ss_pred CCCeeEEEe-------cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCc
Q 017417 75 ELRIPVRYL-------REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE 147 (372)
Q Consensus 75 ~~~~~i~~~-------~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~ 147 (372)
..+..+.+. .++.+.|++++++++++++.....++|+|++||++++.++.++++.|++.++++++++.+.+.+
T Consensus 90 ~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~ 169 (425)
T PRK00725 90 ELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPRE 169 (425)
T ss_pred CCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchh
Confidence 001112111 1233589999999999999743236799999999999999999999999999999998877656
Q ss_pred ccccceEEEEcCCCCceeEeeecCCCc-------ccCceeeeEEEeCHhhH-HHhhhcccccchhhhhhccchhhhhhhc
Q 017417 148 SASQFGELVADPDTNELLHYTEKPETF-------VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSA 219 (372)
Q Consensus 148 ~~~~~~~v~~~~~~~~v~~i~ek~~~~-------~~~~~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (372)
++..||.+.+++ +++|..|.|||..+ ...++++|+|+|++++| +.|.+......
T Consensus 170 ~~~~yG~v~~d~-~~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~----------------- 231 (425)
T PRK00725 170 EASAFGVMAVDE-NDRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPN----------------- 231 (425)
T ss_pred hcccceEEEECC-CCCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCC-----------------
Confidence 788999999986 58999999998543 25689999999999976 45644211100
Q ss_pred ccccccccccccccccccCCCCceEEEeecc-----------hhhhhcCCccccccchHHHHhhccccC---Cc--ccc-
Q 017417 220 TRNLTTDFVRLDQDILSPLAGKKQLYTYETM-----------DFWEQIKTPGMSLKCSGLYLAQFRLTS---PN--LLA- 282 (372)
Q Consensus 220 ~~~~~~~~~~~~~d~l~~~~~~~~v~~~~~~-----------~~w~~i~t~~d~~~a~~~~~~~~~~~~---~~--~~~- 282 (372)
...+| ..|+++.+.+++++++|.++ +||.++++|++|++|+..++....... .. +..
T Consensus 232 ---~~~~~---~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~ 305 (425)
T PRK00725 232 ---SSHDF---GKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTY 305 (425)
T ss_pred ---ccchh---hHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccC
Confidence 01122 26888888888899999885 699999999999999987764211000 00 000
Q ss_pred CCCCCCC---------cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCC
Q 017417 283 SGDGTKN---------ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWK 353 (372)
Q Consensus 283 ~~~~~~~---------~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~ 353 (372)
.....+. .....+++|+++|.| +++.|. +|+||++|.|+++|+|.+|+|+++|.|+++|.|.+|+|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~ 383 (425)
T PRK00725 306 QEQLPPAKFVFDRSGRRGMAINSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRG 383 (425)
T ss_pred CCCCCCCeEeccCCCCcceEEeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCC
Confidence 0000000 112347889999999 788887 89999999999999999999999999999999999999999
Q ss_pred CEECCCcEEcCCCCc
Q 017417 354 SSIGRWSRVQASSKY 368 (372)
Q Consensus 354 ~~i~~~~~i~~~~~~ 368 (372)
++|++++.|.+++..
T Consensus 384 ~~i~~~~~i~~~~~~ 398 (425)
T PRK00725 384 CVIPEGMVIGEDPEE 398 (425)
T ss_pred CEECCCCEECCCCCC
Confidence 999999999877643
No 8
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.9e-45 Score=355.84 Aligned_cols=326 Identities=22% Similarity=0.353 Sum_probs=255.5
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCc-chhhhhHhhcce-----EEEEcccchHHHHHHHhhccC--CC--
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISN--EL-- 76 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~--~~-- 76 (372)
+++.||||||| +|+||+|||..+||||+|++|+ |||+|+|++|.+ |+|++.+..+.+.+|+.+... .+
T Consensus 2 ~~~~AVILAaG--~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~ 79 (429)
T PRK02862 2 KRVLAIILGGG--AGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSG 79 (429)
T ss_pred CcEEEEEECCC--CCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCC
Confidence 37899999999 9999999999999999999999 999999999887 777777777889999874211 01
Q ss_pred C-eeEEEecCC-----cccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccc
Q 017417 77 R-IPVRYLRED-----KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESAS 150 (372)
Q Consensus 77 ~-~~i~~~~~~-----~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~ 150 (372)
+ ..+.+..+. ...|++++++++++++.....++|+|++||++++.++.++++.|++.++++|+++.+...+++.
T Consensus 80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 159 (429)
T PRK02862 80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDAS 159 (429)
T ss_pred CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcc
Confidence 1 122221121 1279999999999999654336799999999999999999999999888899999877656678
Q ss_pred cceEEEEcCCCCceeEeeecCCCc---------------------ccCceeeeEEEeCHhhHHHh-hhcccccchhhhhh
Q 017417 151 QFGELVADPDTNELLHYTEKPETF---------------------VSDLINCGVYVFTPDIFNAI-QGVSSQRKDRENLR 208 (372)
Q Consensus 151 ~~~~v~~~~~~~~v~~i~ek~~~~---------------------~~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~ 208 (372)
.||.+.+++ +++|..|.|||... ...++++|+|+|++++|..+ .+.. .
T Consensus 160 ~yG~i~~d~-~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~-------- 229 (429)
T PRK02862 160 GFGLMKTDD-DGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-E-------- 229 (429)
T ss_pred cceEEEECC-CCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-C--------
Confidence 899999985 68999999998531 23588999999999999654 3321 0
Q ss_pred ccchhhhhhhcccccccccccccccccccCCCCceEEEeecchhhhhcCCccccccchHHHHhhccccCCccccC-----
Q 017417 209 RVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLAS----- 283 (372)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~~~~~~~~~~~~~~----- 283 (372)
+..+..|+++.+.++.++++|.++|||.++++|++|++++..++....... ..+..
T Consensus 230 ------------------~~~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~-~~~~~~~~i~ 290 (429)
T PRK02862 230 ------------------YTDFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPF-SFYDEKAPIY 290 (429)
T ss_pred ------------------hhhhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcc-cccCCCCcee
Confidence 111125777777788899999999999999999999999988762211000 01100
Q ss_pred -------CCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECC-------------------CC
Q 017417 284 -------GDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILD-------------------GV 337 (372)
Q Consensus 284 -------~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~-------------------~~ 337 (372)
+.....+.+ .++.|+++|.| +++.|. +|+||++|+||++|+|.+|+|+. ++
T Consensus 291 ~~~~~~~~a~~~~~~~-~~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~ 367 (429)
T PRK02862 291 TRARYLPPSKLLDATI-TESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPL 367 (429)
T ss_pred ccCCCCCCccccccEE-EeCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCccc
Confidence 000112233 35799999999 889897 89999999999999999999986 69
Q ss_pred EECCCcEEEceEECCCCEECCCcEEcCCC
Q 017417 338 EIMENAVVTNAIVGWKSSIGRWSRVQASS 366 (372)
Q Consensus 338 ~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 366 (372)
.|+++|+|.+|+|++++.||+++.|.++.
T Consensus 368 ~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~ 396 (429)
T PRK02862 368 GIGEGTTIKRAIIDKNARIGNNVRIVNKD 396 (429)
T ss_pred EECCCCEEEEEEECCCcEECCCcEEecCC
Confidence 99999999999999999999999998765
No 9
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=2e-45 Score=350.64 Aligned_cols=332 Identities=17% Similarity=0.247 Sum_probs=244.4
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCc-chhhhhHhhcce-----EEEEcccchH-HHHHHHhhccCCCCee
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEER-EFALYVSSISNELRIP 79 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~-----i~vv~~~~~~-~i~~~~~~~~~~~~~~ 79 (372)
++|+||||||| +|+||+|||.++||||+||+|| |||+|++++|.+ |+|++++..+ ++.+|+.+ ...|+..
T Consensus 1 ~~~~avila~g--~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-~~~~~~~ 77 (369)
T TIGR02092 1 NKMSAIINLTE--SSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-GREWDLH 77 (369)
T ss_pred CcEEEEEECCC--CCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-CCCCCcc
Confidence 36899999999 9999999999999999999999 999999999988 6776666554 89999975 2345444
Q ss_pred E------EEecCCc-c--cChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccc
Q 017417 80 V------RYLREDK-P--HGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESAS 150 (372)
Q Consensus 80 i------~~~~~~~-~--~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~ 150 (372)
+ .++.++. . .|++++++.+++++.....++|+|++||++++.++.+++++|+++++++|+++.++..+++.
T Consensus 78 ~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~ 157 (369)
T TIGR02092 78 RKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADAS 157 (369)
T ss_pred cccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHcc
Confidence 2 2223332 2 36677899999998532225799999999999999999999999899999999887544567
Q ss_pred cce-EEEEcCCCCceeEeeecCCCcccCceeeeEEEeCHhhHH-Hhhhcccccchhhhhhccchhhhhhhcccccccccc
Q 017417 151 QFG-ELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (372)
Q Consensus 151 ~~~-~v~~~~~~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (372)
.|+ .+..+. +++|..+.+++.......+++|+|+|++++|. .+.+.... . ..++
T Consensus 158 ~~g~vv~~~~-~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~----~------------------~~~~- 213 (369)
T TIGR02092 158 EYDTILRFDE-SGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQR----G------------------KLTS- 213 (369)
T ss_pred ccCcEEEEcC-CCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhc----C------------------cccc-
Confidence 775 455654 57887775543222346789999999998664 44332111 0 0111
Q ss_pred cccccccccCCCCceEEEeecchhhhhcCCccccccchHHHHhhccccCCccc-cCC----C---CCCCcEEcCCcEECC
Q 017417 229 RLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLL-ASG----D---GTKNATIIGDVYVHP 300 (372)
Q Consensus 229 ~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~~~~~~~~~~~~-~~~----~---~~~~~~~~~~~~i~~ 300 (372)
..++++.++.+.++++|..+++|.++++|++|.+|+..+++.+... ..+ ..+ . ....+.+.+++.| +
T Consensus 214 --~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~p~~i~~~~~i-~ 288 (369)
T TIGR02092 214 --LEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQ--SLFYSSQGPIYTKVKDEPPTYYAENSKV-E 288 (369)
T ss_pred --HHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchh--hhcCCCCCceeeccCCCCCcEEcCCCEE-E
Confidence 1467777666788999999999999999999999998777554221 111 000 0 0012223332322 2
Q ss_pred CCEECCCCEEC---CCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCCCCcCC
Q 017417 301 SAKIHPTAKIG---PNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQASSKYNY 370 (372)
Q Consensus 301 ~~~i~~~~~i~---~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~ 370 (372)
++.|+++|+|+ .+|+|+++|+|+++|+|.+|+|+++|.|++++.+.+|+|+++++|++++.+.+..+.|.
T Consensus 289 ~~~Ig~~~~i~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~~~~~~ 361 (369)
T TIGR02092 289 NSLVANGCIIEGKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGTSEQPL 361 (369)
T ss_pred EeEEcCCCEEeeEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCCCCccE
Confidence 33444555553 37999999999999999999999999999999999999999999999999998888775
No 10
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.3e-44 Score=351.01 Aligned_cols=326 Identities=23% Similarity=0.387 Sum_probs=256.3
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCc-chhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCC---
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELR--- 77 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~--- 77 (372)
++|+||||||| +|+||+|+|.++||||+|++|+ |||+|+|+++.+ |+|++.+..+++.+|++... .++
T Consensus 2 ~~~~aIIlA~G--~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~-~~~~~~ 78 (436)
T PLN02241 2 KSVAAIILGGG--AGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAY-NFGNGG 78 (436)
T ss_pred CceEEEEEeCC--CCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccC-CCCCCc
Confidence 57999999999 9999999999999999999997 999999999887 77777788888999997532 111
Q ss_pred ------eeEEEecCC-----cccChHHHHHHHHHHhhccC---CCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEe
Q 017417 78 ------IPVRYLRED-----KPHGSAGALYNFRDLIMEDN---PSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIK 143 (372)
Q Consensus 78 ------~~i~~~~~~-----~~~g~~~al~~~~~~l~~~~---~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~ 143 (372)
+.+.+..+. .+.|+++++++++.++.+.. .++||+++||++++.++.++++.|++.++++|+++.+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 79 NFGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred ccCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 222222221 36899999999988775422 3679999999999999999999999999999999988
Q ss_pred cCCcccccceEEEEcCCCCceeEeeecCCCcc---------------------cCceeeeEEEeCHhhHHHh-hhccccc
Q 017417 144 VSAESASQFGELVADPDTNELLHYTEKPETFV---------------------SDLINCGVYVFTPDIFNAI-QGVSSQR 201 (372)
Q Consensus 144 ~~~~~~~~~~~v~~~~~~~~v~~i~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~ 201 (372)
+..+.+.+||.+.++. +++|.++.|||..+. .+++++|+|+|++++|..+ .+....
T Consensus 159 v~~~~~~~ygvv~~d~-~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~- 236 (436)
T PLN02241 159 VDESRASDFGLMKIDD-TGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPT- 236 (436)
T ss_pred cchhhcCcceEEEECC-CCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccc-
Confidence 8656678999999975 689999999985432 3789999999999999654 332111
Q ss_pred chhhhhhccchhhhhhhcccccccccccccccccccCCCC-ceEEEeecchhhhhcCCccccccchHHHHhhcccc---C
Q 017417 202 KDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLT---S 277 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~-~~v~~~~~~~~w~~i~t~~d~~~a~~~~~~~~~~~---~ 277 (372)
..+| ..|+++.++.+ .+|++|.++|||.++++|++|.+|+..++...... .
T Consensus 237 ----------------------~~~~---~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~ 291 (436)
T PLN02241 237 ----------------------ANDF---GSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYD 291 (436)
T ss_pred ----------------------ccch---hHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccC
Confidence 1123 26888877766 68999999999999999999999998887643110 0
Q ss_pred C--cccc-----CCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECC---------------
Q 017417 278 P--NLLA-----SGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILD--------------- 335 (372)
Q Consensus 278 ~--~~~~-----~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~--------------- 335 (372)
+ .+.. ++.....+.+.+ ++|+++|.|+ ++.|. +|+|+++|.|+++|+|.+|+|+.
T Consensus 292 ~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~ 368 (436)
T PLN02241 292 PDAPIYTSPRFLPPSKIEDCRITD-SIISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLA 368 (436)
T ss_pred CCCcccccCCCCCCcEecCCeEEE-eEEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEeEEECCCccccccccccccc
Confidence 0 0000 000112233333 7899999999 99996 89999999999999999999866
Q ss_pred -C---CEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 336 -G---VEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 336 -~---~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
+ ++|+++|.|.+++|++++.||+++.|..+
T Consensus 369 ~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~ 402 (436)
T PLN02241 369 EGKVPIGIGENTKIRNAIIDKNARIGKNVVIINK 402 (436)
T ss_pred cCCcceEECCCCEEcceEecCCCEECCCcEEecc
Confidence 3 38999999999999999999999999744
No 11
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=2.2e-44 Score=342.63 Aligned_cols=325 Identities=24% Similarity=0.365 Sum_probs=245.3
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCc-chhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCC---CeeEE
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL---RIPVR 81 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~---~~~i~ 81 (372)
||||||| +|+||+|+|.++||||+|++|+ |||+|+++.|.+ |+|++.+..+++.+|+....... ...+.
T Consensus 1 aiILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 78 (361)
T TIGR02091 1 AMVLAGG--RGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVT 78 (361)
T ss_pred CEEeCCC--CCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEE
Confidence 6999999 9999999999999999999999 899999999887 77777777778999987421110 01122
Q ss_pred Ee-------cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceE
Q 017417 82 YL-------REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGE 154 (372)
Q Consensus 82 ~~-------~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 154 (372)
+. .++...|++++++++.++++....++|++++||++++.++.++++.|++.++++++++.+.+.+++..||.
T Consensus 79 ~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~ 158 (361)
T TIGR02091 79 LLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGV 158 (361)
T ss_pred EeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccE
Confidence 21 12235799999999999986543367999999999999999999999888888888888765566788999
Q ss_pred EEEcCCCCceeEeeecCCCcccC-------ceeeeEEEeCHhhHH-Hhhhcccccchhhhhhccchhhhhhhcccccccc
Q 017417 155 LVADPDTNELLHYTEKPETFVSD-------LINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (372)
Q Consensus 155 v~~~~~~~~v~~i~ek~~~~~~~-------~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (372)
+.++. +++|..+.|||..+... ++++|+|+|++++|. .+.+...... ...+
T Consensus 159 v~~d~-~~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~--------------------~~~~ 217 (361)
T TIGR02091 159 MQVDE-DGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPE--------------------SSHD 217 (361)
T ss_pred EEECC-CCCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCC--------------------cccc
Confidence 99985 58999999998554444 899999999999874 4443211100 0112
Q ss_pred cccccccccccCCCCceEEEeecchhhhhcCCccccccchHHHHhhccccC---CccccCCC---CCCCcEEcCC-----
Q 017417 227 FVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTS---PNLLASGD---GTKNATIIGD----- 295 (372)
Q Consensus 227 ~~~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~----- 295 (372)
+ ..|+++.+++++++++|.++++|.++++|++|.+|+..++....... ......+. ..+...+++.
T Consensus 218 ~---~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~ 294 (361)
T TIGR02091 218 F---GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVD 294 (361)
T ss_pred c---HHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEEC
Confidence 2 25788888888899999999999999999999999988775432110 00100000 0122333333
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEc
Q 017417 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 363 (372)
+.|+++|.|+++ .+. +|+||++|+|+++|+|.+|+|++++.|+++|.|.+|+|++++.|+.++.|.
T Consensus 295 ~~ig~~~~I~~~-~v~-~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 295 SLVSEGCIISGA-TVS-HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred CEECCCCEECCC-EEE-ccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence 444445555443 333 899999999999999999999999999999999999999999999999885
No 12
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=6.6e-44 Score=338.18 Aligned_cols=319 Identities=24% Similarity=0.342 Sum_probs=232.8
Q ss_pred eEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEccc-chHHHHHHHhhccCCCCeeEEEe
Q 017417 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 10 ~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~-~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
+||||||| .|+||+|+|..+||||+|++|+|||+|+++.+.+ +++++++ ..+.+.+|+.+ ...|+.++.++
T Consensus 1 kaiIlAaG--~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-~~~~~~~~~~~ 77 (353)
T TIGR01208 1 KALILAAG--KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-GERFGAKITYI 77 (353)
T ss_pred CEEEECCc--CcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-ccccCceEEEE
Confidence 58999999 9999999999999999999999999999999877 6666666 77889999876 34567777777
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCc
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~ 163 (372)
.+....|++++++.+++++++ +++++++||++++.++.++++.|.+.++++++++.+.. ++..|+.+..+. +++
T Consensus 78 ~~~~~~G~~~al~~a~~~l~~---~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~--~~~~~g~~~~~~-~~~ 151 (353)
T TIGR01208 78 VQGEPLGLAHAVYTARDFLGD---DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR--DPTAFGVAVLED-GKR 151 (353)
T ss_pred ECCCCCCHHHHHHHHHHhcCC---CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC--ChhhCeEEEEcC-CCc
Confidence 777789999999999999854 35999999999999999999999988889999988763 467788888763 578
Q ss_pred eeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCCC-c
Q 017417 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-K 242 (372)
Q Consensus 164 v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~-~ 242 (372)
|..+.|||..+.+++.++|+|+|++.+++.+.+..+.. ..+++ ..|+++.+.++ .
T Consensus 152 v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~----------------------~~e~~--l~d~l~~l~~~g~ 207 (353)
T TIGR01208 152 ILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSW----------------------RGELE--ITDAIQWLIEKGY 207 (353)
T ss_pred EEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCCC----------------------CCcEE--HHHHHHHHHHcCC
Confidence 99999998777788999999999999988886543210 11222 15777777655 5
Q ss_pred eEEEeecchhhhhcCCccccccchHHHHhhccccCCcccc-----CCCC-CCCcEEcCCcEECCCCEECCCCEE-----C
Q 017417 243 QLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLA-----SGDG-TKNATIIGDVYVHPSAKIHPTAKI-----G 311 (372)
Q Consensus 243 ~v~~~~~~~~w~~i~t~~d~~~a~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~i~~~~~i~~~~~i-----~ 311 (372)
+|++|.++|+|.++++|+||.+|+..++............ .... .+.+.+ +++.|.+++.|+++|+| .
T Consensus 208 ~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~ 286 (353)
T TIGR01208 208 KVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIG 286 (353)
T ss_pred eEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccccCCcCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEEC
Confidence 8999999999999999999999999887643211000000 0000 011222 22222233333434433 3
Q ss_pred CCcEECCCCEECCCcEEeceEECCCCEECCC-cEEEceEECCCCEECCCcEEc
Q 017417 312 PNVSISANARIGAGVRLISCIILDGVEIMEN-AVVTNAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 312 ~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~-~~i~~~~i~~~~~i~~~~~i~ 363 (372)
++|+||++|.|+ +|.|.+|+|+++++|+.+ +.+.++++++++.|+.++++.
T Consensus 287 ~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~ 338 (353)
T TIGR01208 287 PYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRP 338 (353)
T ss_pred CCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccc
Confidence 344444444443 344457777777777766 477778888788888777665
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1e-41 Score=310.59 Aligned_cols=322 Identities=22% Similarity=0.367 Sum_probs=262.2
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEE
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
.+.+|||||| .||||.+ .+||-|.|++||||++|.|+.+.. ++++..+..+.+...+.+.. ++.|
T Consensus 2 ~~~~vILAAG--kGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~-----~v~~ 71 (460)
T COG1207 2 SLSAVILAAG--KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD-----DVEF 71 (460)
T ss_pred CceEEEEecC--CCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc-----CceE
Confidence 5789999999 9999999 899999999999999999999876 55444445566777776521 4788
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCC
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~ 160 (372)
+.|.+++||++|++++++++.++..+++||++||+++ ...|+++++.|...++.+++++... ++|..||.+..+.
T Consensus 72 v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~--~dP~GYGRIvr~~- 148 (460)
T COG1207 72 VLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL--DDPTGYGRIVRDG- 148 (460)
T ss_pred EEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc--CCCCCcceEEEcC-
Confidence 8899999999999999999955444579999999998 4568899999998889999999886 6799999999986
Q ss_pred CCceeEeeecCC----CcccCceeeeEEEeC-HhhHHHhhhcccccchhhhhhccchhhhhhhccccccccccccccccc
Q 017417 161 TNELLHYTEKPE----TFVSDLINCGVYVFT-PDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (372)
Q Consensus 161 ~~~v~~i~ek~~----~~~~~~~~~Giy~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 235 (372)
+|+|..|.|..+ ...-..+++|+|+|+ +.++++|.+...++. +++||. +|++
T Consensus 149 ~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNa---------------------qgEYYL--TDvI 205 (460)
T COG1207 149 NGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNA---------------------QGEYYL--TDVI 205 (460)
T ss_pred CCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccc---------------------cCcEeH--HHHH
Confidence 689999988542 224577899999999 567777777655433 355664 8888
Q ss_pred ccCC-CCceEEEeecchhhhh--cCCccccccchHHHHhhccccCCccccCCCC---CCCcEEcCCcEECCCCEECCCCE
Q 017417 236 SPLA-GKKQLYTYETMDFWEQ--IKTPGMSLKCSGLYLAQFRLTSPNLLASGDG---TKNATIIGDVYVHPSAKIHPTAK 309 (372)
Q Consensus 236 ~~~~-~~~~v~~~~~~~~w~~--i~t~~d~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~i~~~~~ 309 (372)
..+. +..+|.++..+.++.- +++-..+-++++.+..+. ...+|..|+. +....+.+++.|++++.|.++++
T Consensus 206 ~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~---~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~ 282 (460)
T COG1207 206 AIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRI---AEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVI 282 (460)
T ss_pred HHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHH---HHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcE
Confidence 7654 4478999988876544 444445555666665433 2245666665 24567789999999999999999
Q ss_pred ECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCCCCc
Q 017417 310 IGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQASSKY 368 (372)
Q Consensus 310 i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~ 368 (372)
|.+++.||++|+||++|+|.||.|++++.|..+|+|++|.|++++.||+++.++|+++.
T Consensus 283 l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L 341 (460)
T COG1207 283 LEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVL 341 (460)
T ss_pred EeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999864
No 14
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.1e-41 Score=289.34 Aligned_cols=276 Identities=23% Similarity=0.357 Sum_probs=226.2
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCeeEEE
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
|+||||||| .|||++|+|...||+|+||.+||||+|.|+.|.. .+|+++.+...+.+++++ +++|+++++|
T Consensus 1 mKgiILAgG--~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY 77 (286)
T COG1209 1 MKGVILAGG--SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITY 77 (286)
T ss_pred CCcEEecCc--CccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEE
Confidence 789999999 9999999999999999999999999999999877 455666677778888876 5789999999
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCC
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~ 162 (372)
..|+.+.|.++|++.+.+++++ ++|+++.||.++..++.++++.+.+...+++++..++ ++|.+||.+.+++ ++
T Consensus 78 ~~Q~~p~GlA~Av~~a~~fv~~---~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V--~dP~rfGV~e~d~-~~ 151 (286)
T COG1209 78 AVQPEPDGLAHAVLIAEDFVGD---DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEV--DDPSRYGVVEFDE-DG 151 (286)
T ss_pred EecCCCCcHHHHHHHHHhhcCC---CceEEEecCceeccChHHHHHHHhccCCCcEEEEEEc--CCcccceEEEEcC-CC
Confidence 9999999999999999999986 4699999999996699999999988888999999999 5799999999996 57
Q ss_pred ceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCCCc
Q 017417 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242 (372)
Q Consensus 163 ~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~ 242 (372)
+|.++.|||..+.++++.+|+|++++.+|+.++...+..+.+.++ +|+++.+++++
T Consensus 152 ~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEI------------------------Td~i~~~i~~G 207 (286)
T COG1209 152 KVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEI------------------------TDAIDLYIEKG 207 (286)
T ss_pred cEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEe------------------------hHHHHHHHHcC
Confidence 999999999999999999999999999999999987775554442 78888777664
Q ss_pred -eEEEeecchhhhhcCCccccccchHHHHhhccccCCccccCCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCCE
Q 017417 243 -QLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANAR 321 (372)
Q Consensus 243 -~v~~~~~~~~w~~i~t~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~ 321 (372)
.+......|.|.|.||++++++|+.+.... ..+.+...++++.++. +++|-..+.
T Consensus 208 ~~~~~~~~~G~WlDtGt~~slleA~~~i~~~-----------------~~~~G~~~~~~~~~~~-------~~~i~~~~~ 263 (286)
T COG1209 208 YLVVAILIRGWWLDTGTPESLLEANNFVRTV-----------------SKRQGFKIACPEEIAW-------NGWIDGPGL 263 (286)
T ss_pred cEEEEEEccceEEecCChhhHHHHHHHHHHH-----------------HhhcCCEEeChhHEEE-------ecEEechHh
Confidence 556667788999999999999998866531 1223455556665555 333444444
Q ss_pred ECCCcEEeceEECCCCEECC
Q 017417 322 IGAGVRLISCIILDGVEIME 341 (372)
Q Consensus 322 i~~~~~i~~~~i~~~~~i~~ 341 (372)
++.++.|.+|.+|+...++.
T Consensus 264 ~~~~~~l~~~~~G~y~~~~~ 283 (286)
T COG1209 264 IGLASQLEKSGYGQYLLELL 283 (286)
T ss_pred hccccchhhcCcchhhhhhh
Confidence 45555555566666554443
No 15
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.4e-39 Score=317.21 Aligned_cols=318 Identities=22% Similarity=0.340 Sum_probs=246.1
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEE
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
++.||||||| .|+||++ .+||+|+|++|+|||+|+++++.+ +++++.+..+++.+++.+. ..+.+
T Consensus 3 ~~~avIlAaG--~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~~ 72 (459)
T PRK14355 3 NLAAIILAAG--KGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVSF 72 (459)
T ss_pred cceEEEEcCC--CCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceEE
Confidence 6899999999 9999986 789999999999999999999876 6777666677788888642 13556
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCC
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~ 160 (372)
+.+....|++++++.++++++.. .++|++++||+++ +.++.++++.|.+.+++++++..+. +++..|+.+.+++
T Consensus 73 ~~~~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~--~~~~~~g~v~~d~- 148 (459)
T PRK14355 73 ALQEEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARL--ENPFGYGRIVRDA- 148 (459)
T ss_pred EecCCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCcCCEEEEcC-
Confidence 66677789999999999998642 2579999999954 5679999999988778888777665 4567789888875
Q ss_pred CCceeEeeecCCC----cccCceeeeEEEeCHhh-HHHhhhcccccchhhhhhccchhhhhhhccccccccccccccccc
Q 017417 161 TNELLHYTEKPET----FVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (372)
Q Consensus 161 ~~~v~~i~ek~~~----~~~~~~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 235 (372)
+++|..+.|||.. ..++++++|+|+|++++ ++.+.+...... ..+++ .+|++
T Consensus 149 ~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~---------------------~~e~~--~~d~i 205 (459)
T PRK14355 149 DGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNA---------------------QGEYY--LTDIV 205 (459)
T ss_pred CCCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCcccc---------------------CCcee--HHHHH
Confidence 6899999987522 12468899999999885 455654321100 11121 16788
Q ss_pred ccCCCC-ceEEEeecchh--hhhcCCccccccchHHHHhhccccCCccccCCCC--CCC-cEEcCCcEECCCCEECCCCE
Q 017417 236 SPLAGK-KQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDG--TKN-ATIIGDVYVHPSAKIHPTAK 309 (372)
Q Consensus 236 ~~~~~~-~~v~~~~~~~~--w~~i~t~~d~~~a~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~i~~~~~i~~~~~ 309 (372)
+.++++ .++++|.++++ |.++++|++|.+|+..+...... .++..+.. .+. ..+.+++.|++++.|+++++
T Consensus 206 ~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~---~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~ 282 (459)
T PRK14355 206 AMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINR---ELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVC 282 (459)
T ss_pred HHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHH---HHHhCCCEEECCCceEECCCeEEcCCCEEeCCcE
Confidence 877765 57999999987 88999999999998766543211 11111111 122 35778889999999999999
Q ss_pred ECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 310 IGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 310 i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
|.++++||++|.|++++.|.+|+||++|+|+++|+|.+++|++++.||+++.+.++
T Consensus 283 I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~ 338 (459)
T PRK14355 283 ISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPG 338 (459)
T ss_pred EeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCC
Confidence 99999999999999999999999999999999999999999999988888777654
No 16
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.6e-38 Score=311.64 Aligned_cols=319 Identities=18% Similarity=0.235 Sum_probs=226.9
Q ss_pred CCCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCee
Q 017417 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP 79 (372)
Q Consensus 5 ~~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~ 79 (372)
|+..+.||||||| .|+||++ .+||+|+|++|+|||+|++++|.. ++|+..+..+.+.+++.. ..
T Consensus 2 ~~~~~~aiILAaG--~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~------~~ 70 (456)
T PRK14356 2 MASTTGALILAAG--KGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD------ED 70 (456)
T ss_pred CCcceeEEEEcCC--CCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc------cC
Confidence 6667999999999 9999985 789999999999999999999876 556655555666666643 12
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEE
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~ 157 (372)
+.++.++.+.|++++++.+++++.....+++++++||+++ ..++.++++.++ +++++++..+. .++..||.+..
T Consensus 71 ~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~--~~~~~~g~v~~ 146 (456)
T PRK14356 71 ARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL--PDPGAYGRVVR 146 (456)
T ss_pred ceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc--CCCCCceEEEE
Confidence 4455566678999999999999864334679999999965 456888988775 55678777776 35678888766
Q ss_pred cCCCCceeEeeecCCC------cccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhccccccccccccc
Q 017417 158 DPDTNELLHYTEKPET------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLD 231 (372)
Q Consensus 158 ~~~~~~v~~i~ek~~~------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (372)
+ +|+|..+.||+.. +.+.++++|+|+|++++|+.+.+....... ..+++ .
T Consensus 147 ~--~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~--------------------~~e~~--l 202 (456)
T PRK14356 147 R--NGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANK--------------------SGEYY--I 202 (456)
T ss_pred c--CCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCccc--------------------CCcEE--H
Confidence 3 6899999987641 235678999999999988765432211000 11222 1
Q ss_pred ccccccCCC-CceEEEeecch--hhhhcCCccccccchHHHHhhccccCCccccCCCC---CCCcEEcCCcEECCCCEEC
Q 017417 232 QDILSPLAG-KKQLYTYETMD--FWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDG---TKNATIIGDVYVHPSAKIH 305 (372)
Q Consensus 232 ~d~l~~~~~-~~~v~~~~~~~--~w~~i~t~~d~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~i~ 305 (372)
.++++.+.+ +.+++++..++ .|.++++|+||.+++..+...... .++..+.. .....+.+++.|++++.|.
T Consensus 203 td~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~---~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~ 279 (456)
T PRK14356 203 TDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVE---KHLESGVLIHAPESVRIGPRATIEPGAEIY 279 (456)
T ss_pred HHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHH---HHHHcCCEEeCCCcEEECCCcEECCCCEEe
Confidence 567766643 45799998876 569999999999988776544321 12222211 1234555666666666666
Q ss_pred CCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 306 PTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 306 ~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
+++.+.++++||++|.|+++|.|.+|+||++|.|+++|.|.+++|++++.||+++.|.++
T Consensus 280 ~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~ 339 (456)
T PRK14356 280 GPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPG 339 (456)
T ss_pred CCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCC
Confidence 666666677777777777777777777777777777777777777777777777666543
No 17
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.6e-38 Score=310.41 Aligned_cols=319 Identities=18% Similarity=0.275 Sum_probs=232.9
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEE
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (372)
..+.+|||||| .|+||++ .+||+|+|++|+|||+|+++++.. ++++..+..+.+.+++.... ..+.
T Consensus 3 ~~~~avILAaG--~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----~~~~ 73 (482)
T PRK14352 3 RPTAVIVLAAG--AGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA----PEVD 73 (482)
T ss_pred CCceEEEEcCC--CCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC----CccE
Confidence 35789999999 9999997 789999999999999999999876 56665556667777776432 1244
Q ss_pred EecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcC
Q 017417 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (372)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~ 159 (372)
++.++...|++++++.+++++.....++++|++||+++ ..++.++++.|++.+++++++..+. +++..|+.+..+.
T Consensus 74 ~~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~--~~p~~yg~~~~~~ 151 (482)
T PRK14352 74 IAVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTL--DDPTGYGRILRDQ 151 (482)
T ss_pred EEeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeec--CCCCCCCEEEECC
Confidence 55567778999999999999864323579999999964 5679999999988777777776665 4678899888775
Q ss_pred CCCceeEeeecCCCcc----cCceeeeEEEeCHhhHHHh-hhcccccchhhhhhccchhhhhhhcccccccccccccccc
Q 017417 160 DTNELLHYTEKPETFV----SDLINCGVYVFTPDIFNAI-QGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (372)
Q Consensus 160 ~~~~v~~i~ek~~~~~----~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 234 (372)
+++|.++.|||.... ..++++|+|+|++++|..+ .+...... ..+++. +|+
T Consensus 152 -~g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~---------------------~~e~~l--~d~ 207 (482)
T PRK14352 152 -DGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNA---------------------QGELYL--TDV 207 (482)
T ss_pred -CCCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCcccc---------------------CCcEeH--HHH
Confidence 689999999976432 3568999999999988654 33221100 112221 688
Q ss_pred cccCCCC-ceEEEeecchhhhhcCCcccc------ccchHHHHhhccccCCccccCCCCCCCcEEcCCcEECCCCEECCC
Q 017417 235 LSPLAGK-KQLYTYETMDFWEQIKTPGMS------LKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPT 307 (372)
Q Consensus 235 l~~~~~~-~~v~~~~~~~~w~~i~t~~d~------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~ 307 (372)
++.+.++ .+|++|.++++|.++++++++ ..++..++..+......... .....+.+++.|++++.|+++
T Consensus 208 i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~----~~~~~i~~~v~ig~~~~I~~~ 283 (482)
T PRK14352 208 LAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVD----PATTWIDVDVTIGRDVVIHPG 283 (482)
T ss_pred HHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC----CCeEEEeCCEEECCCcEEeCC
Confidence 8877766 589999999999999998876 22333222222111111111 123567788889999999999
Q ss_pred CEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 308 AKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 308 ~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
+.|.++++||++|+|+++|+|.+|+||++|.|++ +.+.+++|++++.||+++.+.++
T Consensus 284 ~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~ 340 (482)
T PRK14352 284 TQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPG 340 (482)
T ss_pred cEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCC
Confidence 9998889999999999999988888888877763 56666666666666666666543
No 18
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.8e-37 Score=304.44 Aligned_cols=318 Identities=21% Similarity=0.314 Sum_probs=235.0
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEE
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (372)
++|+||||||| .|+||++ .+||+|+|++|+|||+|++++|.. |+|++.+..+.+.+++.. ..+.
T Consensus 6 ~~~~avILAaG--~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~------~~i~ 74 (481)
T PRK14358 6 RPLDVVILAAG--QGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG------SGVA 74 (481)
T ss_pred CCceEEEECCC--CCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc------CCcE
Confidence 47999999999 9999997 689999999999999999999875 666666666778877753 2255
Q ss_pred EecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcC
Q 017417 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (372)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~ 159 (372)
++.++.+.|++++++.+++++...+ +++++++||+++ +.+++++++.|++.++++++++.+++ ++.+||.+.+++
T Consensus 75 ~v~~~~~~Gt~~al~~~~~~l~~~~-~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~--~~~~yG~v~~d~ 151 (481)
T PRK14358 75 FARQEQQLGTGDAFLSGASALTEGD-ADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELP--DATGYGRIVRGA 151 (481)
T ss_pred EecCCCcCCcHHHHHHHHHHhhCCC-CcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCCCceEEEECC
Confidence 6667777899999999999885321 359999999965 56799999999888888888887764 467799999985
Q ss_pred CCCceeEeeecCCCcc----cCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhccccccccccccccccc
Q 017417 160 DTNELLHYTEKPETFV----SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (372)
Q Consensus 160 ~~~~v~~i~ek~~~~~----~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 235 (372)
+++|.+|.|||.... .+++++|+|+|++++++.+....+... ..+++ + .|++
T Consensus 152 -~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~---------------------~ge~~-l-~d~i 207 (481)
T PRK14358 152 -DGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNK---------------------AGEYY-L-TDLL 207 (481)
T ss_pred -CCCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCcc---------------------CCeEE-H-HHHH
Confidence 589999999875322 356899999999766555544321100 11222 2 5788
Q ss_pred ccCCCC-ceEEEeecchhhhhcCCccccccchHH-HH-hhccccCCccccCCCC--CC-CcEEcCCcEECCCCEECCCCE
Q 017417 236 SPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGL-YL-AQFRLTSPNLLASGDG--TK-NATIIGDVYVHPSAKIHPTAK 309 (372)
Q Consensus 236 ~~~~~~-~~v~~~~~~~~w~~i~t~~d~~~a~~~-~~-~~~~~~~~~~~~~~~~--~~-~~~~~~~~~i~~~~~i~~~~~ 309 (372)
+.+.++ .++++|.++++|..++....+..++.. ++ ..... ..+..+.. .+ ...+.+++.||+++.|++++.
T Consensus 208 ~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~ 284 (481)
T PRK14358 208 GLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINE---AHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVL 284 (481)
T ss_pred HHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHH---HHHhCCCEEecCCeeeccCCcEECCCCEEeCCcE
Confidence 777665 579999999999888877666443321 11 11100 01111111 11 222367788888888888888
Q ss_pred ECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 310 IGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 310 i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
|.+++.||++|+|+++|.|.+|+||++|.|+++++|.+++||+++.|++++.+.++
T Consensus 285 I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~ 340 (481)
T PRK14358 285 LRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPG 340 (481)
T ss_pred EeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCC
Confidence 88888899999999999888888999988888888888888888888888777654
No 19
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=9.5e-37 Score=298.85 Aligned_cols=313 Identities=21% Similarity=0.340 Sum_probs=225.8
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEe
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
|++|||||| .|+||++ .+||+|+|++|+|||+|+++++.+ ++++.++..+.+.+++.+. + +.++
T Consensus 1 m~aiIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~----~--i~~~ 69 (451)
T TIGR01173 1 LSVVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR----D--VNWV 69 (451)
T ss_pred CeEEEEcCC--CCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC----C--cEEE
Confidence 689999999 9999997 789999999999999999999886 6666666667787777642 2 3444
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCC
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~ 161 (372)
.+..+.|+++++++++++++.+ +++++++||.++ +.++.++++.|.+. ..++++.+. +++..|+.+..++ +
T Consensus 70 ~~~~~~G~~~ai~~a~~~l~~~--~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~--~~~~~~g~v~~d~-~ 142 (451)
T TIGR01173 70 LQAEQLGTGHAVLQALPFLPDD--GDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL--PDPTGYGRIIREN-D 142 (451)
T ss_pred EcCCCCchHHHHHHHHHhcCCC--CcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec--CCCCCCCEEEEcC-C
Confidence 4555679999999999998643 469999999964 55789999888664 366666665 3566788888875 5
Q ss_pred CceeEeeecCCCc----ccCceeeeEEEeCHhhH-HHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccc
Q 017417 162 NELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILS 236 (372)
Q Consensus 162 ~~v~~i~ek~~~~----~~~~~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~ 236 (372)
++|..+.||+... ....+++|+|+|++++| +.+.+...... +.+++ ..++++
T Consensus 143 g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~---------------------~~e~~--~~~~~~ 199 (451)
T TIGR01173 143 GKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNA---------------------QGEYY--LTDVIA 199 (451)
T ss_pred CCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccc---------------------cCcEe--HHHHHH
Confidence 7899999986432 12478899999998875 44544321100 11122 156676
Q ss_pred cCCCC-ceEEEeecchh--hhhcCCccccccchHHHHhhccccCCccccCCCC---CCCcEEcCCcEECCCCEECCCCEE
Q 017417 237 PLAGK-KQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDG---TKNATIIGDVYVHPSAKIHPTAKI 310 (372)
Q Consensus 237 ~~~~~-~~v~~~~~~~~--w~~i~t~~d~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~i~~~~~i 310 (372)
.+.++ .++++|..+++ |.++++|+++.+++..+...... .++..+.. .....+.+++.|++++.|+++++|
T Consensus 200 ~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i 276 (451)
T TIGR01173 200 LAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAK---KLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVIL 276 (451)
T ss_pred HHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHH---HHHhCCCEEecCCeEEECCccEECCCCEEcCCeEE
Confidence 66655 57999999988 89999999988876654432111 01111100 123345677778888888888888
Q ss_pred CCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 311 GPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 311 ~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
.++++||++|.|+++|.|.+|+|+++|.|+++|.|.+++|++++.||+++.|.++
T Consensus 277 ~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~ 331 (451)
T TIGR01173 277 EGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPG 331 (451)
T ss_pred eCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCC
Confidence 7778888888888888888888888888888888777777777777777776654
No 20
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-37 Score=278.97 Aligned_cols=352 Identities=20% Similarity=0.300 Sum_probs=236.8
Q ss_pred CCCCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEccc-chHHHHHHHhhccCCCC
Q 017417 4 SEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSISNELR 77 (372)
Q Consensus 4 ~~~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~-~~~~i~~~~~~~~~~~~ 77 (372)
+...++++||+||| .||||..++...|||||||+|+|||+|+|.+|.+ ++|+... ....++.++.+.. .+.
T Consensus 5 s~~~efqavV~a~~--ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~-~l~ 81 (433)
T KOG1462|consen 5 SPMSEFQAVVLAGG--GGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI-DLK 81 (433)
T ss_pred cchHHhhhheeecC--CceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC-ccc
Confidence 34457999999999 9999999999999999999999999999999987 5555544 4556777775421 111
Q ss_pred ee---EEEe-cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCc------
Q 017417 78 IP---VRYL-REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE------ 147 (372)
Q Consensus 78 ~~---i~~~-~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~------ 147 (372)
.+ +.+- ..+...|++++++.....+.. ++||++.||.+.+.++..+++.++..++..+++......+
T Consensus 82 ~~~~~v~ip~~~~~d~gtadsLr~Iy~kikS---~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgq 158 (433)
T KOG1462|consen 82 KRPDYVEIPTDDNSDFGTADSLRYIYSKIKS---EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQ 158 (433)
T ss_pred ccccEEEeecccccccCCHHHHhhhhhhhcc---CCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCc
Confidence 11 2221 112347999999999999986 3599999999999999999999998877666665543211
Q ss_pred ---ccccceEEEEcCCCCceeEeeecC------------------CCcccCceeeeEEEeCHhhHHHhhhcccccc-hhh
Q 017417 148 ---SASQFGELVADPDTNELLHYTEKP------------------ETFVSDLINCGVYVFTPDIFNAIQGVSSQRK-DRE 205 (372)
Q Consensus 148 ---~~~~~~~v~~~~~~~~v~~i~ek~------------------~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~-~~~ 205 (372)
....+..+.+++.++|+....... -..++.+.++.+|+|+.++++.|++...-.. +.+
T Consensus 159 k~k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~ 238 (433)
T KOG1462|consen 159 KGKKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKAD 238 (433)
T ss_pred ccccccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeeccc
Confidence 112344566776677766554321 1236789999999999999999986432211 111
Q ss_pred hhhccchhhhhhhc-cccccccccc----ccccccccCCCCceEEEeecc--hhhhhcCCccccccchH--HHHhhcccc
Q 017417 206 NLRRVSSFEALQSA-TRNLTTDFVR----LDQDILSPLAGKKQLYTYETM--DFWEQIKTPGMSLKCSG--LYLAQFRLT 276 (372)
Q Consensus 206 ~~~~~~~~~~~~~~-~~~~~~~~~~----~~~d~l~~~~~~~~v~~~~~~--~~w~~i~t~~d~~~a~~--~~~~~~~~~ 276 (372)
.++.+-..|..++- .+.....+.. ..++....-.++.++|+|... +-+...+|+..|+++|+ .+.......
T Consensus 239 f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~ 318 (433)
T KOG1462|consen 239 FLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEA 318 (433)
T ss_pred ccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhcccc
Confidence 11111111110000 0000000000 001111000123677777653 56778999999999995 332211111
Q ss_pred CCccccCCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEE
Q 017417 277 SPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSI 356 (372)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i 356 (372)
......+. ...-+..+++++++++|++++.|. .|+||.+|.||++++|.+|+||++++||+||.|++|+||++++|
T Consensus 319 --~~~k~~~~-~~~l~g~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~I 394 (433)
T KOG1462|consen 319 --KFVKNYVK-KVALVGADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQI 394 (433)
T ss_pred --ccccchhh-heeccchhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccccee
Confidence 11111111 123335578999999999999887 99999999999999999999999999999999999999999999
Q ss_pred CCCcEEcCC
Q 017417 357 GRWSRVQAS 365 (372)
Q Consensus 357 ~~~~~i~~~ 365 (372)
|+++.+..|
T Consensus 395 g~gs~L~nC 403 (433)
T KOG1462|consen 395 GSGSKLKNC 403 (433)
T ss_pred cCCCeeeee
Confidence 999998766
No 21
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=6.3e-37 Score=277.83 Aligned_cols=250 Identities=54% Similarity=1.018 Sum_probs=198.9
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCeeEEEec
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~ 84 (372)
|||||||...|+||+|+|..+||||+|++|+|||+|+|+++.. |+|++++..+.+.+|+++....+++.+.++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 5899998112999999999999999999999999999999864 6777777778899999864344566777777
Q ss_pred CCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCce
Q 017417 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNEL 164 (372)
Q Consensus 85 ~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~v 164 (372)
+....|++++++.+++++....+++|+|++||++++.++.++++.|++.++++++++.++..+.+..||.+.++.++++|
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v 160 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEV 160 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeE
Confidence 77779999999999999864323579999999999999999999999988999999988755567889998887436899
Q ss_pred eEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCCCceE
Q 017417 165 LHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQL 244 (372)
Q Consensus 165 ~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~v 244 (372)
..+.|||..+.+.++++|+|+|++++|+.+.+..+.+.++.++ .+... ......++.+..|+++.+.++++|
T Consensus 161 ~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~------~~~~~--~~~~~~~~~~~~d~~~~l~~~~~v 232 (257)
T cd06428 161 LHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQL------GDDNN--REGRAEVIRLEQDVLTPLAGSGKL 232 (257)
T ss_pred EEEEeCCCCcccceEEEEEEEECHHHHHHHhhhcccccccccc------ccccc--cccccceeeehhhhhhHHhccCCE
Confidence 9999999877788999999999999999887654332221110 00000 000112334457999999888999
Q ss_pred EEeecchhhhhcCCccccccchHH
Q 017417 245 YTYETMDFWEQIKTPGMSLKCSGL 268 (372)
Q Consensus 245 ~~~~~~~~w~~i~t~~d~~~a~~~ 268 (372)
++|.++|||.+|+||++|.+|++.
T Consensus 233 ~~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 233 YVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred EEecCCCeeecCCCHHHHHhHhhc
Confidence 999999999999999999998764
No 22
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.4e-36 Score=294.03 Aligned_cols=313 Identities=19% Similarity=0.272 Sum_probs=200.0
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEE
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (372)
++|.+|||||| .|+||++ .+||+|+|++|+|||+|+++.+.. ++++..+..+.+.+++... .+.
T Consensus 4 ~~~~aiIlAaG--~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~------~~~ 72 (456)
T PRK09451 4 SAMSVVILAAG--KGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE------PLN 72 (456)
T ss_pred CCceEEEEcCC--CCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC------CcE
Confidence 36999999999 9999985 789999999999999999999865 6666666666777777531 245
Q ss_pred EecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcC
Q 017417 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (372)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~ 159 (372)
++.+....|++++++.+++++.++ +++++++||.++ +.++.++++.|.+.. +++++.+. +++..||.+..+
T Consensus 73 ~i~~~~~~Gt~~al~~a~~~l~~~--~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~--~~~~~yG~v~~~- 145 (456)
T PRK09451 73 WVLQAEQLGTGHAMQQAAPFFADD--EDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKL--DNPTGYGRITRE- 145 (456)
T ss_pred EEECCCCCCcHHHHHHHHHhhccC--CcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEc--CCCCCceEEEec-
Confidence 555666789999999999988643 579999999964 567999988875543 45555554 456779987543
Q ss_pred CCCceeEeeecCCCc----ccCceeeeEEEeCHhhHH-Hhhhcccccchhhhhhccchhhhhhhcccccccccccccccc
Q 017417 160 DTNELLHYTEKPETF----VSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (372)
Q Consensus 160 ~~~~v~~i~ek~~~~----~~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 234 (372)
+++|.+|.|||... ..+++++|+|+|+++.|. .+.+..... ...+++ ..|+
T Consensus 146 -~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~---------------------~~~e~~--l~d~ 201 (456)
T PRK09451 146 -NGKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNN---------------------AQGEYY--ITDI 201 (456)
T ss_pred -CCeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCcc---------------------ccCcee--HHHH
Confidence 57999999998532 136799999999987775 444432110 012222 1688
Q ss_pred cccCCCC-ceEEEee------cchh--hhhcCCccccccchH---HHHhhccccCCcccc--------CCCC-CCCcEEc
Q 017417 235 LSPLAGK-KQLYTYE------TMDF--WEQIKTPGMSLKCSG---LYLAQFRLTSPNLLA--------SGDG-TKNATII 293 (372)
Q Consensus 235 l~~~~~~-~~v~~~~------~~~~--w~~i~t~~d~~~a~~---~~~~~~~~~~~~~~~--------~~~~-~~~~~~~ 293 (372)
++.+.++ .+|++|. ++|| |.+++++++|++++. .+........|.... .+.. .+.+.+.
T Consensus 202 i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~ 281 (456)
T PRK09451 202 IALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIE 281 (456)
T ss_pred HHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEe
Confidence 8887766 5888885 4666 788999999998763 222111111111100 0000 1223333
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEE
Q 017417 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRV 362 (372)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 362 (372)
+++.||+++.|+++|+|. +|+||++|.|++++.|.+|+|+++|+|++++.|. ++.+++++.||+++.|
T Consensus 282 ~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 282 GNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred cCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 344444444444444443 4555555555555555555555555555555554 4455555554444433
No 23
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-35 Score=278.82 Aligned_cols=331 Identities=21% Similarity=0.352 Sum_probs=250.0
Q ss_pred CCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCC---
Q 017417 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELR--- 77 (372)
Q Consensus 6 ~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~--- 77 (372)
.+.++||++|-. +.+||.|+|..+|++|||++|.|||+|+|++|.. |+|++..+..++.+|++.. .|.
T Consensus 22 ~~rLqAIllaDs--f~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~s--ew~~~~ 97 (673)
T KOG1461|consen 22 EHRLQAILLADS--FETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKS--EWYLPM 97 (673)
T ss_pred ccceEEEEEecc--chhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhc--cccccc
Confidence 478999999987 9999999999999999999999999999999987 8888887788899999862 332
Q ss_pred -eeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhc-----CCceEEEEEecCCccccc
Q 017417 78 -IPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNY-----GGMGTILVIKVSAESASQ 151 (372)
Q Consensus 78 -~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~-----~~~~~i~~~~~~~~~~~~ 151 (372)
..+.++......+.+++++..-+.--. .++|++++||++.+.+|.++++.|+++ ++.+||++.+........
T Consensus 98 ~~~v~ti~s~~~~S~GDamR~id~k~li--tgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~ 175 (673)
T KOG1461|consen 98 SFIVVTICSGESRSVGDAMRDIDEKQLI--TGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTE 175 (673)
T ss_pred cceEEEEcCCCcCcHHHHHHHHHhccee--ecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCc
Confidence 234444444567888888876554111 156999999999999999999999553 456788887753111122
Q ss_pred ceEEEEcCCCCceeEeee----cC--------------CCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchh
Q 017417 152 FGELVADPDTNELLHYTE----KP--------------ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSF 213 (372)
Q Consensus 152 ~~~v~~~~~~~~v~~i~e----k~--------------~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 213 (372)
--.+.+|..|.++..+.+ +. -..+.++.+++|-+|+|.++.+|.+.+ +|
T Consensus 176 ~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNF-------------Dy 242 (673)
T KOG1461|consen 176 QVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNF-------------DY 242 (673)
T ss_pred ceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcc-------------cc
Confidence 234667777888888875 21 023678999999999999999998752 22
Q ss_pred hhhhhcccccccccccccccccccCCCCceEEEeecch--hhhhcCCccccccchHHHHhhccc-cCCc-----------
Q 017417 214 EALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMD--FWEQIKTPGMSLKCSGLYLAQFRL-TSPN----------- 279 (372)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~v~~~~~~~--~w~~i~t~~d~~~a~~~~~~~~~~-~~~~----------- 279 (372)
+ ...||. ..+|-.-+-+.+|+++.... |-..+.++..|...+..++.+|-. ..|+
T Consensus 243 q--------~r~DfV---~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~ 311 (673)
T KOG1461|consen 243 Q--------TRDDFV---RGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSL 311 (673)
T ss_pred e--------ehhhhh---hhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeee
Confidence 1 134454 23332222347899988865 888888888888777766665522 1111
Q ss_pred ----cccCCCC--CCCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCC
Q 017417 280 ----LLASGDG--TKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWK 353 (372)
Q Consensus 280 ----~~~~~~~--~~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~ 353 (372)
+++.++. .++..+..+++||.++.|+.|+.|. ||+||++|+||++++|.+|+||++|+||+||.|.+|+||++
T Consensus 312 ~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~ 390 (673)
T KOG1461|consen 312 ERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD 390 (673)
T ss_pred cccccccCccceehhhccccceEEecccccccCCCeee-cceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC
Confidence 1111111 1345566788999999999999998 99999999999999999999999999999999999999999
Q ss_pred CEECCCcEEcCCCC
Q 017417 354 SSIGRWSRVQASSK 367 (372)
Q Consensus 354 ~~i~~~~~i~~~~~ 367 (372)
|.|+.++.+.+|+-
T Consensus 391 v~i~~~~~l~~g~v 404 (673)
T KOG1461|consen 391 VKIGEGAILKPGSV 404 (673)
T ss_pred cEeCCCcccCCCcE
Confidence 99999999988753
No 24
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=3.3e-36 Score=276.09 Aligned_cols=231 Identities=18% Similarity=0.265 Sum_probs=185.4
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhcc---------
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS--------- 73 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~--------- 73 (372)
.|+||||||| .||||+|+|..+||||+||+|+|+|+|+++++.. |+|++++..+.+.+|+....
T Consensus 3 ~mkavILAaG--~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~ 80 (297)
T TIGR01105 3 NLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQR 80 (297)
T ss_pred ceEEEEECCC--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHh
Confidence 6899999999 9999999999999999999999999999999876 77777777778888885421
Q ss_pred ------------CCCCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeec--------CChHHHHHHHHhc
Q 017417 74 ------------NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHRNY 133 (372)
Q Consensus 74 ------------~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~--------~~l~~~l~~~~~~ 133 (372)
..++.++.++.|+++.|+++|++++++++++ ++|++++||.+++ .++.++++.|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~---~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~ 157 (297)
T TIGR01105 81 VKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGD---NPFVVVLPDIIIDDATADPLRYNLAAMIARFNET 157 (297)
T ss_pred cchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCC---CCEEEEECCeeccccccccchhHHHHHHHHHHHh
Confidence 0235678888899999999999999999964 3589999999885 4899999999776
Q ss_pred CCceEEEEEecCCcccccceEEEEcC---CCCc---eeEeeecCCCc---ccCceeeeEEEeCHhhHHHhhhcccccchh
Q 017417 134 GGMGTILVIKVSAESASQFGELVADP---DTNE---LLHYTEKPETF---VSDLINCGVYVFTPDIFNAIQGVSSQRKDR 204 (372)
Q Consensus 134 ~~~~~i~~~~~~~~~~~~~~~v~~~~---~~~~---v~~i~ek~~~~---~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~ 204 (372)
++.++++ ..+. +++.+||.+.++. ++++ |.++.|||..+ .++++++|+|+|++++|+.+.+..+..
T Consensus 158 ~~~~~~~-~~~~-~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~--- 232 (297)
T TIGR01105 158 GRSQVLA-KRMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGA--- 232 (297)
T ss_pred CCcEEEE-EEcC-CCCccceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCC---
Confidence 6655444 4433 4588999998842 1354 58888998643 478999999999999999886643211
Q ss_pred hhhhccchhhhhhhcccccccccccccccccccCCCCceEEEeecchhhhhcCCccccccchHHH
Q 017417 205 ENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (372)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (372)
.+++. .+|+++.+++++++++|.++|+|.|+|+|++|++|+.-+
T Consensus 233 -------------------~ge~~--ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 233 -------------------WGRIQ--LTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred -------------------CCeee--HHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHH
Confidence 12222 168888888889999999999999999999999997655
No 25
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=8.3e-36 Score=266.68 Aligned_cols=227 Identities=39% Similarity=0.724 Sum_probs=190.9
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEe
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
|++|||||| .|+||+|+|..+||+|+|++|+|||+|+++++.. |+|++++..+++.+|+.....+.++.+.+.
T Consensus 1 m~~iIlAaG--~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~ 78 (233)
T cd06425 1 MKALILVGG--YGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFS 78 (233)
T ss_pred CcEEEecCC--CccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEec
Confidence 689999999 9999999999999999999999999999999886 777777777788888876433456666666
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCc
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~ 163 (372)
.+....|++++++.++++++..+ +++++++||++++.++.++++.|++.++++++++.+.. ++..||.+.+++++++
T Consensus 79 ~~~~~~G~~~al~~a~~~~~~~~-~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~~~~~ 155 (233)
T cd06425 79 IETEPLGTAGPLALARDLLGDDD-EPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVE--DPSKYGVVVHDENTGR 155 (233)
T ss_pred cCCCCCccHHHHHHHHHHhccCC-CCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcC--CccccCeEEEcCCCCE
Confidence 66677899999999999986421 35999999999999999999999999999999988763 4678899988854589
Q ss_pred eeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCCCce
Q 017417 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243 (372)
Q Consensus 164 v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~ 243 (372)
|.++.|||..+.++++++|+|+|++++|+.+.+.. . .+..|+++.++++++
T Consensus 156 v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~--------------------------~---~~~~~~~~~l~~~~~ 206 (233)
T cd06425 156 IERFVEKPKVFVGNKINAGIYILNPSVLDRIPLRP--------------------------T---SIEKEIFPKMASEGQ 206 (233)
T ss_pred EEEEEECCCCCCCCEEEEEEEEECHHHHHhcccCc--------------------------c---cchhhhHHHHHhcCC
Confidence 99999998766688999999999999998876421 0 112467777877889
Q ss_pred EEEeecchhhhhcCCccccccchHHH
Q 017417 244 LYTYETMDFWEQIKTPGMSLKCSGLY 269 (372)
Q Consensus 244 v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (372)
|++|+++|+|.++++|++|.+|++.+
T Consensus 207 v~~~~~~g~w~digt~~~~~~a~~~~ 232 (233)
T cd06425 207 LYAYELPGFWMDIGQPKDFLKGMSLY 232 (233)
T ss_pred EEEEeeCCEEEcCCCHHHHHHHHHHh
Confidence 99999999999999999999998765
No 26
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.5e-35 Score=284.41 Aligned_cols=312 Identities=20% Similarity=0.272 Sum_probs=197.4
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEE
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (372)
+++.||||||| .|+||++ .+||+|+|++|+|||+|+++++.. ++|++.+..+.+.+++.... ..+.
T Consensus 4 ~~~~aiILAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~----~~~~ 74 (446)
T PRK14353 4 RTCLAIILAAG--EGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA----PDAE 74 (446)
T ss_pred ccceEEEEcCC--CCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC----CCce
Confidence 46899999999 9999986 689999999999999999999876 66666666677877775431 2233
Q ss_pred EecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcC
Q 017417 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (372)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~ 159 (372)
++.+....|++++++.+++++... .+++++++||.++ ..+++.+++.+ +.+++++++..+. .++..|+.+..+
T Consensus 75 ~~~~~~~~G~~~sl~~a~~~l~~~-~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~--~~~~~~g~~~~~- 149 (446)
T PRK14353 75 IFVQKERLGTAHAVLAAREALAGG-YGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRA--ADPTGYGRLIVK- 149 (446)
T ss_pred EEEcCCCCCcHHHHHHHHHHHhcc-CCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEe--CCCCcceEEEEC-
Confidence 444566789999999999988521 1569999999965 44688888744 4566777777665 456778877763
Q ss_pred CCCceeEeeecCCCc----ccCceeeeEEEeCHhhH-HHhhhcccccchhhhhhccchhhhhhhcccccccccccccccc
Q 017417 160 DTNELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (372)
Q Consensus 160 ~~~~v~~i~ek~~~~----~~~~~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 234 (372)
+++|..+.|||... ...+.++|+|+|++..| +.+.+..... .+.+|+ .+++
T Consensus 150 -~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~---------------------~~~~~~--~~d~ 205 (446)
T PRK14353 150 -GGRLVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDN---------------------AKGEYY--LTDI 205 (446)
T ss_pred -CCeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccC---------------------CCCcEe--HHHH
Confidence 57999999987432 23678999999997654 5554432110 011222 1566
Q ss_pred cccCCCC-ceEEEeecc-hhhhhcCCccccccchHHHHhhccc--cC--CccccCCCCCCCcEEcCCcEECCCCEECCCC
Q 017417 235 LSPLAGK-KQLYTYETM-DFWEQIKTPGMSLKCSGLYLAQFRL--TS--PNLLASGDGTKNATIIGDVYVHPSAKIHPTA 308 (372)
Q Consensus 235 l~~~~~~-~~v~~~~~~-~~w~~i~t~~d~~~a~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ 308 (372)
++.+++. .+++.+..+ ++|.+|++|+||.+|+.++.+..+. +. ..+..+. ...+.+.+.|++++.|++++
T Consensus 206 ~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~I~~~~~i~~~~ 281 (446)
T PRK14353 206 VAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPE----TVFFSYDTVIGRDVVIEPNV 281 (446)
T ss_pred HHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCC----eEEECCceEECCCCEECCCC
Confidence 7776544 579999886 5799999999999998877654211 00 0111110 11223334444444444444
Q ss_pred EECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCc
Q 017417 309 KIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWS 360 (372)
Q Consensus 309 ~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~ 360 (372)
+|++++.||++|+|+.++.|.+|+||++|+|+++|.|. +|.||+++.||+++
T Consensus 282 ~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~ 334 (446)
T PRK14353 282 VFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFV 334 (446)
T ss_pred EECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCce
Confidence 44444444444444444444444444444444444443 34444444444443
No 27
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.7e-35 Score=285.38 Aligned_cols=313 Identities=22% Similarity=0.381 Sum_probs=210.2
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEE
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
++.||||||| .|+||++ .+||+|+|++|+|||+|+++++.. ++++..+..+++.+++... +.+
T Consensus 2 ~~~avIlAaG--~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~-------~~~ 69 (458)
T PRK14354 2 NRYAIILAAG--KGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR-------SEF 69 (458)
T ss_pred CceEEEEeCC--CCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC-------cEE
Confidence 5789999999 9999986 799999999999999999999986 6666566666777776531 234
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCC
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~ 160 (372)
+.+....|++++++++++++... .+++++++||.++ +.++.++++.|++.++++++++... +++..|+.+..++
T Consensus 70 ~~~~~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~--~~~~~~g~v~~d~- 145 (458)
T PRK14354 70 ALQEEQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA--ENPTGYGRIIRNE- 145 (458)
T ss_pred EEcCCCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc--CCCCCceEEEEcC-
Confidence 44556789999999999998642 1569999999864 5679999999987777888887765 3566788877775
Q ss_pred CCceeEeeecCCC----cccCceeeeEEEeCHh-hHHHhhhcccccchhhhhhccchhhhhhhccccccccccccccccc
Q 017417 161 TNELLHYTEKPET----FVSDLINCGVYVFTPD-IFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (372)
Q Consensus 161 ~~~v~~i~ek~~~----~~~~~~~~Giy~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 235 (372)
+++|..+.||+.. ....++++|+|+|+++ +++.+.+...+.. ...++ ..|++
T Consensus 146 ~~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~---------------------~~~~~--~~d~~ 202 (458)
T PRK14354 146 NGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNA---------------------QGEYY--LTDVI 202 (458)
T ss_pred CCCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCcccc---------------------CCcEe--HHHHH
Confidence 6789999987632 1245789999999986 5666655322110 11121 15666
Q ss_pred ccCCCC-ceEEEeecchhhh--hcCCccccccchHHHHhhccccCCccccCCCC---CCCcEEcCCcEECCCCEECCCCE
Q 017417 236 SPLAGK-KQLYTYETMDFWE--QIKTPGMSLKCSGLYLAQFRLTSPNLLASGDG---TKNATIIGDVYVHPSAKIHPTAK 309 (372)
Q Consensus 236 ~~~~~~-~~v~~~~~~~~w~--~i~t~~d~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~i~~~~~ 309 (372)
+.+.+. .++++|..+|+|. ++++++|+..|+.++...... ..+..+.. .....+.+++.|++++.|+++++
T Consensus 203 ~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~---~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~ 279 (458)
T PRK14354 203 EILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINE---KHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVV 279 (458)
T ss_pred HHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHH---HHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeE
Confidence 666544 6899999998765 566888888887655432211 01111100 11234556666666666766666
Q ss_pred ECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEc
Q 017417 310 IGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 310 i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 363 (372)
+.+++.||++|.|++++.|.+|+|+++|.|+ ++++.+++|++++.||+++.|.
T Consensus 280 i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~ 332 (458)
T PRK14354 280 IKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLR 332 (458)
T ss_pred EecceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEec
Confidence 6666666777777666666666555555554 2334444444444444444333
No 28
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=2.8e-35 Score=269.39 Aligned_cols=231 Identities=20% Similarity=0.335 Sum_probs=191.6
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EE-EEcccchHHHHHHHhhccCCCCeeE
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IY-LVGFYEEREFALYVSSISNELRIPV 80 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~-vv~~~~~~~i~~~~~~~~~~~~~~i 80 (372)
+.|+||||||| .||||+|+|..+||||+||+|||||+|+|+.+.. |+ |++++..+.+.+++++ ..+|++++
T Consensus 2 ~~~kaIILAgG--~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i 78 (292)
T PRK15480 2 KTRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNL 78 (292)
T ss_pred CceEEEEECCC--cccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCcee
Confidence 36999999999 9999999999999999999999999999999876 55 4455556678888876 35688888
Q ss_pred EEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcC
Q 017417 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (372)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~-~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~ 159 (372)
.++.++.+.|++++++.+.++++++ +++++.||.++ ..++.++++.|.+.+.++++++.++ .++.+||.+.+|+
T Consensus 79 ~y~~q~~~~Gta~Al~~a~~~i~~~---~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v--~~p~~yGvv~~d~ 153 (292)
T PRK15480 79 QYKVQPSPDGLAQAFIIGEEFIGGD---DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHV--NDPERYGVVEFDQ 153 (292)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC---CEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEc--CCcccCcEEEECC
Confidence 8998888899999999999999653 37778899876 7899999999988888899988877 4678999999985
Q ss_pred CCCceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCC
Q 017417 160 DTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239 (372)
Q Consensus 160 ~~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~ 239 (372)
+++|..+.|||..+.++++++|+|+|++++++.+.+..+.. .+++.. +|+++.+.
T Consensus 154 -~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~----------------------~ge~~i--td~~~~~l 208 (292)
T PRK15480 154 -NGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSA----------------------RGELEI--TDINRIYM 208 (292)
T ss_pred -CCcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCC----------------------CCeeEh--HHHHHHHH
Confidence 68999999999888899999999999999999887653321 122321 67887777
Q ss_pred CCceEE-Eeecchh-hhhcCCccccccchHHHH
Q 017417 240 GKKQLY-TYETMDF-WEQIKTPGMSLKCSGLYL 270 (372)
Q Consensus 240 ~~~~v~-~~~~~~~-w~~i~t~~d~~~a~~~~~ 270 (372)
+++++. .+..+|+ |.|+|||++|.+|+..+.
T Consensus 209 ~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 209 EQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred hcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 766664 4566785 999999999999988765
No 29
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.8e-34 Score=280.98 Aligned_cols=302 Identities=16% Similarity=0.230 Sum_probs=200.4
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce----EEEEcccchHHHHHHHhhccCCCCeeEEEe
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
++.||||||| .|+||++ .+||+|+|++|+|||+|+++.+.. ++|+..+..+.+.+++..... ++++...
T Consensus 2 ~~~aiIlAaG--~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~~~~i~Ivv~~~~~~i~~~~~~~~~--~v~~~~~ 74 (430)
T PRK14359 2 KLSIIILAAG--KGTRMKS---SLPKVLHTICGKPMLFYILKEAFAISDDVHVVLHHQKERIKEAVLEYFP--GVIFHTQ 74 (430)
T ss_pred CccEEEEcCC--CCccCCC---CCCceeCEECCccHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhcCC--ceEEEEe
Confidence 4789999999 9999997 899999999999999999999875 666666777788888865321 2333333
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCc
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~ 163 (372)
.+....|++++++.+.. . .++|++++||.++. ..+.++.+.+.++++++++.+. +++..|+.+..+ +++
T Consensus 75 ~~~~~~gt~~al~~~~~---~--~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~--~~~~~~g~v~~d--~g~ 143 (430)
T PRK14359 75 DLENYPGTGGALMGIEP---K--HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL--ADPKGYGRVVIE--NGQ 143 (430)
T ss_pred cCccCCCcHHHHhhccc---C--CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc--CCCccCcEEEEc--CCe
Confidence 33345789999877322 1 25799999999752 2234444555567778877776 346678877765 579
Q ss_pred eeEeeecCCCc----ccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCC
Q 017417 164 LLHYTEKPETF----VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239 (372)
Q Consensus 164 v~~i~ek~~~~----~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~ 239 (372)
|..+.|++... ...+.++|+|+|++++|+.+.+...... ...+++ .+|+++.+.
T Consensus 144 v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~--------------------~~~e~~--l~d~i~~l~ 201 (430)
T PRK14359 144 VKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQN--------------------AQKEYY--LTDIIALAI 201 (430)
T ss_pred EEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCccc--------------------ccCcee--hhhHHHHHH
Confidence 99999876421 2467899999999999987643221100 011121 157777666
Q ss_pred CC-ceEEEeecc-hhhhhcCCccccccchHHHHhhccccCCccccCC------C---CCCCcEEcCCcEECCCCEECCCC
Q 017417 240 GK-KQLYTYETM-DFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG------D---GTKNATIIGDVYVHPSAKIHPTA 308 (372)
Q Consensus 240 ~~-~~v~~~~~~-~~w~~i~t~~d~~~a~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~i~~~~~i~~~~ 308 (372)
+. .+++.+..+ ++|.++++|+||.+|+.++...... .++..+ . ....+.+.+++.|++++.|++++
T Consensus 202 ~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~---~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~ 278 (430)
T PRK14359 202 EKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKK---NAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKS 278 (430)
T ss_pred HcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHH---HHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCe
Confidence 54 789999887 5899999999999998766543321 111111 0 12445566677777777777776
Q ss_pred EECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCC
Q 017417 309 KIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKS 354 (372)
Q Consensus 309 ~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~ 354 (372)
.++ +++||++|.|+. +.|.+|+||+++.|+++|+|.+|.||++|
T Consensus 279 ~i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~ 322 (430)
T PRK14359 279 KIE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFV 322 (430)
T ss_pred EEE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcE
Confidence 665 666666666644 44455555555555555555554444444
No 30
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.8e-34 Score=280.93 Aligned_cols=305 Identities=23% Similarity=0.349 Sum_probs=206.2
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce----EEEEcccchHHHHHHHhhccCCCCeeEEEec
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~ 84 (372)
|+||||||| .|+||++ .+||+|+|++|+|||+|+|+.+.+ ++|+..+..+.+.+++.. .+.++.
T Consensus 1 m~avIlA~G--~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~~~i~vv~~~~~~~i~~~~~~-------~~~~~~ 68 (448)
T PRK14357 1 MRALVLAAG--KGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVAQKVGVVLGHEAELVKKLLPE-------WVKIFL 68 (448)
T ss_pred CeEEEECCC--CCccCCC---CCCceeeEECCeeHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhccc-------ccEEEe
Confidence 689999999 9999986 789999999999999999999875 677766666677777643 133455
Q ss_pred CCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCC
Q 017417 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (372)
Q Consensus 85 ~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~ 162 (372)
+....|++++++.+++++..+ +++++++||.++ ..++.++++.|++.++++++++.+. +++..|+.+..+ ++
T Consensus 69 ~~~~~g~~~ai~~a~~~l~~~--~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~--~~~~~~g~v~~d--~g 142 (448)
T PRK14357 69 QEEQLGTAHAVMCARDFIEPG--DDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL--EDPTGYGRIIRD--GG 142 (448)
T ss_pred cCCCCChHHHHHHHHHhcCcC--CeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc--CCCCCcEEEEEc--CC
Confidence 566789999999999998643 579999999854 5678999999988888899988876 357789988776 46
Q ss_pred ceeEeeecCCCc----ccCceeeeEEEeCHhhHHH-hhhcccccchhhhhhccchhhhhhhccccccccccccccccccc
Q 017417 163 ELLHYTEKPETF----VSDLINCGVYVFTPDIFNA-IQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (372)
Q Consensus 163 ~v~~i~ek~~~~----~~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ 237 (372)
++ .+.||+..+ ...++++|+|+|++++|.. +.+...... ...++ ..|+++.
T Consensus 143 ~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~---------------------~~~~~--~~d~i~~ 198 (448)
T PRK14357 143 KY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENA---------------------KGEYY--LTDAVNF 198 (448)
T ss_pred eE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCC---------------------CCeEE--HHHHHHh
Confidence 78 676754322 1358899999999998644 544321100 11111 1466655
Q ss_pred CCCCceEEEeecchhhhh--cCCccccccchHHHHhhccccCCccccCCCC--CC-CcEEcCCcEECCCCEECCCCEECC
Q 017417 238 LAGKKQLYTYETMDFWEQ--IKTPGMSLKCSGLYLAQFRLTSPNLLASGDG--TK-NATIIGDVYVHPSAKIHPTAKIGP 312 (372)
Q Consensus 238 ~~~~~~v~~~~~~~~w~~--i~t~~d~~~a~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~i~~~~~i~~~~~i~~ 312 (372)
+ .+++.|...++|.. +++|+++..+...+.+... +.+...+.. .+ ...+.+++.|++++.|++++.|.+
T Consensus 199 ~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~ 272 (448)
T PRK14357 199 A---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRIL---EELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEG 272 (448)
T ss_pred h---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHH---HHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEe
Confidence 5 34888888899655 5588888776655533211 011111101 11 234566677777777777777776
Q ss_pred CcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEE
Q 017417 313 NVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRV 362 (372)
Q Consensus 313 ~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 362 (372)
++.||++|.|++++.|.+|+|+++|+|. .+.+.+|+|++++.|++++.|
T Consensus 273 ~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i 321 (448)
T PRK14357 273 KTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRL 321 (448)
T ss_pred eeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEE
Confidence 7777777777777777666666666653 233344444444443333333
No 31
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=4.8e-35 Score=269.16 Aligned_cols=232 Identities=19% Similarity=0.261 Sum_probs=187.0
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhcc--------
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS-------- 73 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~-------- 73 (372)
++|+||||||| .||||+|+|..+||||+||+|||+|+|+++++.+ |+|++++..+.+.+|+....
T Consensus 2 ~~mkavIlAaG--~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 2 TNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CceEEEEECCc--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 47999999999 9999999999999999999999999999999887 77777778888999986311
Q ss_pred -------------CCCCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeec--------CChHHHHHHHHh
Q 017417 74 -------------NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHRN 132 (372)
Q Consensus 74 -------------~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~--------~~l~~~l~~~~~ 132 (372)
..++.++.++.|+.+.|++++++++++++.+ +++++++||.+++ .++.++++.|.+
T Consensus 80 ~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~---~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~ 156 (297)
T PRK10122 80 RVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGD---NPFVVVLPDVVIDDASADPLRYNLAAMIARFNE 156 (297)
T ss_pred cchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCC---CCEEEEECCeeccCccccccchhHHHHHHHHHH
Confidence 0134567888888889999999999999953 3588889999885 479999999988
Q ss_pred cCCceEEEEEecCCcccccceEEEEcC---CCC---ceeEeeecCCCc---ccCceeeeEEEeCHhhHHHhhhcccccch
Q 017417 133 YGGMGTILVIKVSAESASQFGELVADP---DTN---ELLHYTEKPETF---VSDLINCGVYVFTPDIFNAIQGVSSQRKD 203 (372)
Q Consensus 133 ~~~~~~i~~~~~~~~~~~~~~~v~~~~---~~~---~v~~i~ek~~~~---~~~~~~~Giy~~~~~~~~~l~~~~~~~~~ 203 (372)
.+++++++ .... +++.+||.+.++. +++ +|..+.|||..+ .++++++|+|+|++++|+.+.+..+..
T Consensus 157 ~~~~~~~~-~~~~-~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~-- 232 (297)
T PRK10122 157 TGRSQVLA-KRMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGA-- 232 (297)
T ss_pred hCCcEEEE-EECC-CCCCCceEEEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCC--
Confidence 77765444 3433 3678999999862 134 788999998654 368999999999999999987632210
Q ss_pred hhhhhccchhhhhhhcccccccccccccccccccCCCCceEEEeecchhhhhcCCccccccchHHH
Q 017417 204 RENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (372)
..++. ..|+++.+++++++++|.++|+|.|+|+|++|++|+..|
T Consensus 233 --------------------~~e~~--ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 233 --------------------WGRIQ--LTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred --------------------CCeee--HHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 11111 168888888889999999999999999999999998766
No 32
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=2.5e-35 Score=266.14 Aligned_cols=232 Identities=33% Similarity=0.591 Sum_probs=189.9
Q ss_pred eEEEEeCCCCCCCccccCcccCCCCCcccCCc-chhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCeeEEE
Q 017417 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 10 ~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
+||||||| +|+||+|+|.++||||+|++|+ |||+|+|+++.. |+|++.++.+.+.+|+++. .++++++.+
T Consensus 1 kavIla~G--~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~-~~~~~~i~~ 77 (248)
T PF00483_consen 1 KAVILAGG--KGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSG-YKFGVKIEY 77 (248)
T ss_dssp EEEEEEES--CCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTS-GGGTEEEEE
T ss_pred CEEEECCC--CCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccc-cccccccee
Confidence 69999999 9999999999999999999999 999999999876 5666667778899999874 446678888
Q ss_pred ecCCcccChHHHHHHHHHHhhccC-CCeEEEEcCCeeecCChHHHHHHHHhcCCce--EEEEEecCCcccccceEEEEcC
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDN-PSHIFLLNCDVCCSFPLPEMLDAHRNYGGMG--TILVIKVSAESASQFGELVADP 159 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~-~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~--~i~~~~~~~~~~~~~~~v~~~~ 159 (372)
+.++...|++++++.+++++.... +++|++++||++++.++.++++.|++.++++ ++...+ .+++..||.+..++
T Consensus 78 i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~v~~d~ 155 (248)
T PF00483_consen 78 IVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVP--VEDPSRYGVVEVDE 155 (248)
T ss_dssp EEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEE--SSGGGGSEEEEEET
T ss_pred eecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhcccccccccccccc--ccccccceeeeecc
Confidence 888888999999999999998753 2459999999999999999999999998844 444444 36689999999995
Q ss_pred CCCceeEeeecCCCcc-cCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccC
Q 017417 160 DTNELLHYTEKPETFV-SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (372)
Q Consensus 160 ~~~~v~~i~ek~~~~~-~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ 238 (372)
+++|.++.|||..+. +.++++|+|+|++++|+.+.+....... ..++ ..|+++.+
T Consensus 156 -~~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~--------------------~~~~---l~d~i~~~ 211 (248)
T PF00483_consen 156 -DGRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENAR--------------------GEDF---LTDAIPKL 211 (248)
T ss_dssp -TSEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTT--------------------SSHH---HHHHHHHH
T ss_pred -ceeEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccch--------------------hhhH---HHHHHHHH
Confidence 689999999998777 8899999999999999988542211111 0111 26788877
Q ss_pred CCCc-eEEEeecch--hhhhcCCccccccchHHHH
Q 017417 239 AGKK-QLYTYETMD--FWEQIKTPGMSLKCSGLYL 270 (372)
Q Consensus 239 ~~~~-~v~~~~~~~--~w~~i~t~~d~~~a~~~~~ 270 (372)
++++ .+.++..++ +|.|||+|++|.+|+..++
T Consensus 212 ~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~ 246 (248)
T PF00483_consen 212 LEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLL 246 (248)
T ss_dssp HHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHH
T ss_pred HHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHh
Confidence 7665 566888888 8999999999999988765
No 33
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=9.7e-35 Score=260.94 Aligned_cols=228 Identities=22% Similarity=0.317 Sum_probs=185.6
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEc-ccchHHHHHHHhhccCCCCeeEEE
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~-~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
|++|||||| .|+||+|+|..+||+|+|++|+|||+|+++++.. |++++ ++..+.+.+|+.. ...|++++.+
T Consensus 1 m~~iIlAaG--~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-~~~~~~~i~~ 77 (240)
T cd02538 1 MKGIILAGG--SGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-GSDLGIRITY 77 (240)
T ss_pred CeEEEEcCc--CcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-ccccCceEEE
Confidence 689999999 9999999999999999999999999999999886 55554 4455678888875 3456777777
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCC
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~-~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~ 161 (372)
..+....|++++++.++++++. +.+++++||.++ +.++.++++.|.+.++++++++.+.. ++.+||.+.+++ +
T Consensus 78 ~~~~~~~G~~~al~~a~~~~~~---~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~-~ 151 (240)
T cd02538 78 AVQPKPGGLAQAFIIGEEFIGD---DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN--DPERYGVVEFDE-N 151 (240)
T ss_pred eeCCCCCCHHHHHHHHHHhcCC---CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC--chhcCceEEecC-C
Confidence 7776778999999999999864 358999999877 66799999999888888998888763 467899999985 6
Q ss_pred CceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCCC
Q 017417 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (372)
Q Consensus 162 ~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~ 241 (372)
|+|..+.|||..+...++++|+|+|++++|+.+.+..+.. ..+++ ..|+++.+.++
T Consensus 152 g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~----------------------~~~~~--l~d~~~~l~~~ 207 (240)
T cd02538 152 GRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSA----------------------RGELE--ITDVNNEYLEK 207 (240)
T ss_pred CcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCC----------------------CCeEE--hHHHHHHHHHh
Confidence 8999999998777788999999999999998886543210 12222 15788887777
Q ss_pred ceEEEeecc--hhhhhcCCccccccchHHH
Q 017417 242 KQLYTYETM--DFWEQIKTPGMSLKCSGLY 269 (372)
Q Consensus 242 ~~v~~~~~~--~~w~~i~t~~d~~~a~~~~ 269 (372)
+++.++.++ |+|.+|+||++|.+|++.+
T Consensus 208 g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 208 GKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred CCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 776666655 9999999999999998764
No 34
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=1.1e-34 Score=265.11 Aligned_cols=228 Identities=19% Similarity=0.302 Sum_probs=187.3
Q ss_pred eEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEE-EcccchHHHHHHHhhccCCCCeeEEEe
Q 017417 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYL-VGFYEEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 10 ~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~v-v~~~~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
+||||||| .|+||+|+|..+||+|+||+|||||+|+|+.+.. |+| ++++..+.+.++++. ..+|++++.++
T Consensus 1 kaIILAgG--~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~ 77 (286)
T TIGR01207 1 KGIILAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYA 77 (286)
T ss_pred CEEEECCC--CCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEE
Confidence 58999999 9999999999999999999999999999998876 554 445666778888876 45688889999
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCC
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~-~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~ 162 (372)
.++.+.|++++++.+.+++++ +.++++.||.++ +.++.++++.|.+.++++++++.++. ++.+||.+.+|+ ++
T Consensus 78 ~q~~~~Gta~al~~a~~~l~~---~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~~yGvv~~d~-~g 151 (286)
T TIGR01207 78 VQPSPDGLAQAFIIGEDFIGG---DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--DPERYGVVEFDS-NG 151 (286)
T ss_pred EccCCCCHHHHHHHHHHHhCC---CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--CHHHCceEEECC-CC
Confidence 888889999999999999965 347788899875 77899999999888888999888873 678999999985 68
Q ss_pred ceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCCCc
Q 017417 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242 (372)
Q Consensus 163 ~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~ 242 (372)
+|.++.|||..+.++++++|+|+|++++++.+.+..+.. ..+++ .+|+++.+.+++
T Consensus 152 ~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~----------------------~ge~e--itdv~~~~l~~g 207 (286)
T TIGR01207 152 RAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSA----------------------RGELE--ITDLNRVYLEEG 207 (286)
T ss_pred eEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCC----------------------CCcEe--HHHHHHHHHHcC
Confidence 999999999877889999999999999999887653321 12222 157887777666
Q ss_pred eEEEeec-chh-hhhcCCccccccchHHHH
Q 017417 243 QLYTYET-MDF-WEQIKTPGMSLKCSGLYL 270 (372)
Q Consensus 243 ~v~~~~~-~~~-w~~i~t~~d~~~a~~~~~ 270 (372)
++.++.. +|+ |.|++||++|++|+..+.
T Consensus 208 ~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 208 RLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred CcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 5554444 676 999999999999987653
No 35
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.7e-33 Score=273.27 Aligned_cols=311 Identities=22% Similarity=0.385 Sum_probs=206.3
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEe
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
+.+|||||| .|+||++ .+||+|+|++|+|||+|+|++|.. ++|+..+..+.+.+++.... .+.++
T Consensus 2 ~~~iIlAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~-----~i~~v 71 (450)
T PRK14360 2 LAVAILAAG--KGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP-----GLEFV 71 (450)
T ss_pred ceEEEEeCC--CCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----CeEEE
Confidence 679999999 9999987 789999999999999999999876 55555555667777775421 24555
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCC
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~ 161 (372)
.+....|++++++.+++++... .+++++++||.++ +.++.++++.|++.+++++++..+. +++..|+.+..++ +
T Consensus 72 ~~~~~~G~~~sv~~~~~~l~~~-~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d~-~ 147 (450)
T PRK14360 72 EQQPQLGTGHAVQQLLPVLKGF-EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL--PNPKGYGRVFCDG-N 147 (450)
T ss_pred EeCCcCCcHHHHHHHHHHhhcc-CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec--CCCCCccEEEECC-C
Confidence 5666789999999999988632 1469999999965 5679999999988888888776654 4567799888875 6
Q ss_pred CceeEeeecCC----CcccCceeeeEEEeCHhhHHHhh-hcccccchhhhhhccchhhhhhhcccccccccccccccccc
Q 017417 162 NELLHYTEKPE----TFVSDLINCGVYVFTPDIFNAIQ-GVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILS 236 (372)
Q Consensus 162 ~~v~~i~ek~~----~~~~~~~~~Giy~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~ 236 (372)
++|.++.|||. ...+.++++|+|+|+++.|..+. +...... ..+++ .+|+++
T Consensus 148 g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~---------------------~~e~~--~td~i~ 204 (450)
T PRK14360 148 NLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNND---------------------QKEYY--LTDTVS 204 (450)
T ss_pred CCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhcccccc---------------------CCcee--HHHHHH
Confidence 89999999864 23467899999999987776543 3221100 01111 145555
Q ss_pred cCCCCceEEEeecchhhhh--cCCccccccchHHHHhhcc--ccCC--ccccCCCCCCCcEEcCCcEECCCCEECCCCEE
Q 017417 237 PLAGKKQLYTYETMDFWEQ--IKTPGMSLKCSGLYLAQFR--LTSP--NLLASGDGTKNATIIGDVYVHPSAKIHPTAKI 310 (372)
Q Consensus 237 ~~~~~~~v~~~~~~~~w~~--i~t~~d~~~a~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i 310 (372)
.+. ++..+.+.++|.. +++|+++..+..++..... ...+ .+... ....+.+++.+++++.|++++.+
T Consensus 205 ~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~----~~~~i~~~~~ig~~~~i~~~~~i 277 (450)
T PRK14360 205 LLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDP----ASCTISETVELGPDVIIEPQTHL 277 (450)
T ss_pred HHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecC----CeEEEeCCEEECCCCEECCCCEE
Confidence 542 3556666766544 9999999888776543321 1000 01110 01234444555555555555555
Q ss_pred CCCcEECCCCEECCCcEEe----------------ceEECCCCEECCCcEEE-ceEECCCCEECCCcEEc
Q 017417 311 GPNVSISANARIGAGVRLI----------------SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 311 ~~~s~ig~~~~i~~~~~i~----------------~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (372)
.++++||++|.|++++.|. +|+|+++|.|+++|.|. +++|++++.|+.++.+.
T Consensus 278 ~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~ 347 (450)
T PRK14360 278 RGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIK 347 (450)
T ss_pred eCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEe
Confidence 5555555555555555544 45555666666666665 56666666666666553
No 36
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=5.6e-33 Score=251.01 Aligned_cols=222 Identities=23% Similarity=0.406 Sum_probs=180.7
Q ss_pred eEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccC---CCCe---
Q 017417 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN---ELRI--- 78 (372)
Q Consensus 10 ~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~---~~~~--- 78 (372)
+||||||| .|+||+|+|.++||+|+||+|+|||+|+++.+.. |+|++++..+++.+++.+... .+..
T Consensus 1 kavilaaG--~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 78 (254)
T TIGR02623 1 KAVILAGG--LGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMA 78 (254)
T ss_pred CEEEEcCc--cccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEec
Confidence 58999999 9999999999999999999999999999999876 777777777888888875321 1111
Q ss_pred --------------eEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEec
Q 017417 79 --------------PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKV 144 (372)
Q Consensus 79 --------------~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~ 144 (372)
.+.+..+..+.|++++++++++++++ ++|++++||++++.++.++++.|.+.++++++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~---e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~- 154 (254)
T TIGR02623 79 DNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDD---EAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ- 154 (254)
T ss_pred ccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCC---CeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec-
Confidence 12234444568999999999999963 469999999999999999999999988888877642
Q ss_pred CCcccccceEEEEcCCCCceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccc
Q 017417 145 SAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLT 224 (372)
Q Consensus 145 ~~~~~~~~~~v~~~~~~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (372)
++..||.+.++. ++|..|.|||... +.++++|+|+|++++|+.+.+. .
T Consensus 155 ---~~~~yG~v~~d~--~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~--------------------------~ 202 (254)
T TIGR02623 155 ---PPGRFGALDLEG--EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGD--------------------------A 202 (254)
T ss_pred ---CCCcccEEEECC--CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhcccc--------------------------C
Confidence 457799988873 5899999998543 6789999999999999877542 1
Q ss_pred cccccccccccccCCCCceEEEeecchhhhhcCCccccccchHHHHhh
Q 017417 225 TDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQ 272 (372)
Q Consensus 225 ~~~~~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~~~ 272 (372)
.+ +..|+++.+.+++++++|.++|+|.+|+||++|.+++..+.+.
T Consensus 203 ~~---~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 203 TV---WEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred ch---hhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence 11 1257888888888999999999999999999999988877543
No 37
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=4.9e-33 Score=256.18 Aligned_cols=232 Identities=21% Similarity=0.287 Sum_probs=187.1
Q ss_pred CCCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCC---
Q 017417 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL--- 76 (372)
Q Consensus 5 ~~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~--- 76 (372)
..+-|++||+||| .|+||+|+|..+||+|+|++|+|+|+|+|+++.. |+|++++..+++.+|++.. ..|
T Consensus 5 ~~~~~~aiIlaaG--~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-~~~~~~ 81 (302)
T PRK13389 5 NTKVKKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTS-FELEAM 81 (302)
T ss_pred cccceEEEEECCc--CCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccc-hhhhhh
Confidence 4457899999999 9999999999999999999999999999999876 7778777778899999642 111
Q ss_pred -------------------CeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeec--------CChHHHHHH
Q 017417 77 -------------------RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDA 129 (372)
Q Consensus 77 -------------------~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~--------~~l~~~l~~ 129 (372)
+..+.++.|....|++++++++.+++.+ ++++|++||.+++ .++.++++.
T Consensus 82 l~~~~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~---~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~ 158 (302)
T PRK13389 82 LEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD---EPVAVILPDVILDEYESDLSQDNLAEMIRR 158 (302)
T ss_pred hhhhhhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCC---CCEEEEeCcceecccccccccccHHHHHHH
Confidence 2345666777789999999999999854 4699999999974 689999999
Q ss_pred HHhcCCceEEEEEecCCcccccceEEEEcC------CCCceeEeeecCC--CcccCceeeeEEEeCHhhHHHhhhccccc
Q 017417 130 HRNYGGMGTILVIKVSAESASQFGELVADP------DTNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQR 201 (372)
Q Consensus 130 ~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~------~~~~v~~i~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~~~~~ 201 (372)
|.+.+++ ++++.++ +++.+||.+..+. ++++|..+.|||. ...++++++|+|+|++++|+.+.+.....
T Consensus 159 h~~~~~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~ 235 (302)
T PRK13389 159 FDETGHS-QIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGA 235 (302)
T ss_pred HHhcCCC-EEEEEEc--ccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCC
Confidence 9887765 6666665 5578899988762 1357999999986 34578999999999999998886543211
Q ss_pred chhhhhhccchhhhhhhcccccccccccccccccccCCCCceEEEeecchhhhhcCCccccccchHHH
Q 017417 202 KDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (372)
..+++ ..|+++.+.++.+|++|.++|+|.|+++|++|++|+..+
T Consensus 236 ----------------------~~e~~--l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 236 ----------------------GDEIQ--LTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred ----------------------CCeee--HHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 11222 168888888888999999999999999999999987665
No 38
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=3.2e-33 Score=254.14 Aligned_cols=227 Identities=25% Similarity=0.344 Sum_probs=179.9
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccC---------
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN--------- 74 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~--------- 74 (372)
|++|||||| .|+||+|+|..+||||+|++|+|||+|+++++.. |+|++++..+++.+|+.....
T Consensus 1 m~avIlAaG--~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (260)
T TIGR01099 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRG 78 (260)
T ss_pred CeEEEEccc--CcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhh
Confidence 689999999 9999999999999999999999999999999876 778887778889999863110
Q ss_pred C---------C--CeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecC---ChHHHHHHHHhcCCceEEE
Q 017417 75 E---------L--RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF---PLPEMLDAHRNYGGMGTIL 140 (372)
Q Consensus 75 ~---------~--~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~---~l~~~l~~~~~~~~~~~i~ 140 (372)
. + ...+.+..+....|++++++.+++++++ ++++|++||.++.. ++.++++.|++.++++ ++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~ 154 (260)
T TIGR01099 79 KEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGD---EPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IA 154 (260)
T ss_pred hHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCC---CCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EE
Confidence 0 0 1345566677789999999999999843 46999999999843 6999999998887765 55
Q ss_pred EEecCCcccccceEEEEcC---CCCceeEeeecCC--CcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhh
Q 017417 141 VIKVSAESASQFGELVADP---DTNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEA 215 (372)
Q Consensus 141 ~~~~~~~~~~~~~~v~~~~---~~~~v~~i~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 215 (372)
+...+.+++.+||.+.++. ++++|..+.|||. ...++++++|+|+|++++|+.+.+.....
T Consensus 155 ~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~-------------- 220 (260)
T TIGR01099 155 VEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGA-------------- 220 (260)
T ss_pred EEECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCC--------------
Confidence 5555545678899988862 2469999999984 33567899999999999999886532211
Q ss_pred hhhcccccccccccccccccccCCCCceEEEeecchhhhhcCCccccccc
Q 017417 216 LQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (372)
Q Consensus 216 ~~~~~~~~~~~~~~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (372)
..++. + .|+++.+.++++|++|.++|||.||+||++|.+|
T Consensus 221 --------~~~~~-l-~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 221 --------GGEIQ-L-TDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred --------CCcee-H-HHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 11121 1 5778887777899999999999999999999874
No 39
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=4.6e-33 Score=254.03 Aligned_cols=231 Identities=23% Similarity=0.305 Sum_probs=183.3
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccC------C--
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN------E-- 75 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~------~-- 75 (372)
|++|||||| .|+||+|+|..+||||+|++|+|||+|+++++.+ |+|++++..+++.+|+..... +
T Consensus 1 mkaiIlAaG--~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (267)
T cd02541 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKG 78 (267)
T ss_pred CeEEEEcCC--CCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcc
Confidence 689999999 9999999999999999999999999999999886 777777777888888864210 0
Q ss_pred ------------CCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecC---ChHHHHHHHHhcCCceEEE
Q 017417 76 ------------LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF---PLPEMLDAHRNYGGMGTIL 140 (372)
Q Consensus 76 ------------~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~---~l~~~l~~~~~~~~~~~i~ 140 (372)
.+.++.++.++...|+++++++++++++. +.++|++||.++.. ++.++++.|++.+++ +++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~ 154 (267)
T cd02541 79 KTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGD---EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIA 154 (267)
T ss_pred cHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCC---CceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEE
Confidence 13456677777789999999999999964 46999999999843 499999999876654 455
Q ss_pred EEecCCcccccceEEEEcCC---CCceeEeeecCC--CcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhh
Q 017417 141 VIKVSAESASQFGELVADPD---TNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEA 215 (372)
Q Consensus 141 ~~~~~~~~~~~~~~v~~~~~---~~~v~~i~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 215 (372)
+...+.+.+.+||.+.++++ +++|..+.|||. ...+.++++|+|+|++++|+.+.+.....
T Consensus 155 ~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~-------------- 220 (267)
T cd02541 155 VEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGK-------------- 220 (267)
T ss_pred EEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCC--------------
Confidence 55655456788999998852 358999999985 34568899999999999999886521110
Q ss_pred hhhcccccccccccccccccccCCCCceEEEeecchhhhhcCCccccccchHHH
Q 017417 216 LQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (372)
Q Consensus 216 ~~~~~~~~~~~~~~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (372)
..+++ ..++++.++++++|++|.++|+|.+++||++|.+|+..+
T Consensus 221 --------~~e~~--~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~ 264 (267)
T cd02541 221 --------GGEIQ--LTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEF 264 (267)
T ss_pred --------CCcEE--HHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 11121 157788887778999999999999999999999987654
No 40
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=2.4e-32 Score=244.81 Aligned_cols=228 Identities=25% Similarity=0.431 Sum_probs=186.8
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEe
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.. |+|++++..+.+.+++++. ..|+.++.++
T Consensus 1 m~avIlAaG--~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~~ 77 (236)
T cd04189 1 MKGLILAGG--KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDG-SRFGVRITYI 77 (236)
T ss_pred CeEEEECCC--ccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEEE
Confidence 689999999 9999999999999999999999999999999876 6777666777888888763 3456777777
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCc
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~ 163 (372)
.+....|++++++.++.++.. +++++++||+++..++.++++.|.+.+.++++++.+.. ++..|+.+.++ +++
T Consensus 78 ~~~~~~g~~~sl~~a~~~i~~---~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~d--~~~ 150 (236)
T cd04189 78 LQEEPLGLAHAVLAARDFLGD---EPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE--DPRRFGVAVVD--DGR 150 (236)
T ss_pred ECCCCCChHHHHHHHHHhcCC---CCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC--CcccceEEEEc--CCe
Confidence 777778999999999999863 35999999999999999999999888888888888763 45778888887 359
Q ss_pred eeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCCC-c
Q 017417 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-K 242 (372)
Q Consensus 164 v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~-~ 242 (372)
|..+.|||..+.+.+.++|+|+|++++|+.+.+..+.. ...++ + .|+++.++++ .
T Consensus 151 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~----------------------~~~~~-~-~d~~~~~i~~g~ 206 (236)
T cd04189 151 IVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSW----------------------RGELE-I-TDAIQWLIDRGR 206 (236)
T ss_pred EEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCC----------------------CCeEE-H-HHHHHHHHHcCC
Confidence 99999998766678899999999999998875432110 11222 1 5777776644 5
Q ss_pred eEEEeecchhhhhcCCccccccchHHHH
Q 017417 243 QLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (372)
Q Consensus 243 ~v~~~~~~~~w~~i~t~~d~~~a~~~~~ 270 (372)
+|++|.++++|.+|+||+||.+|+..++
T Consensus 207 ~v~~~~~~~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 207 RVGYSIVTGWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred cEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence 7999999999999999999999987765
No 41
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.98 E-value=4.5e-32 Score=240.62 Aligned_cols=213 Identities=18% Similarity=0.307 Sum_probs=176.3
Q ss_pred eEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEec
Q 017417 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (372)
Q Consensus 10 ~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~ 84 (372)
+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.+ |+|++++..+++.+|+.+ ..|++.+.+..
T Consensus 1 kaiIlaaG--~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~ 76 (221)
T cd06422 1 KAMILAAG--LGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISD 76 (221)
T ss_pred CEEEEcCC--CCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEec
Confidence 58999999 9999999999999999999999999999999887 777777778889999876 34677777776
Q ss_pred CC-cccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHh--cCCceEEEEEecCCcccccceEEEEcCCC
Q 017417 85 ED-KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRN--YGGMGTILVIKVSAESASQFGELVADPDT 161 (372)
Q Consensus 85 ~~-~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~v~~~~~~ 161 (372)
+. ...|++++++.++++++. +++++++||++++.++.++++.|.+ .++.+++...+. +....+|.+.++. +
T Consensus 77 ~~~~~~g~~~~l~~~~~~~~~---~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d~-~ 150 (221)
T cd06422 77 EPDELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRN--PGHNGVGDFSLDA-D 150 (221)
T ss_pred CCCcccccHHHHHHHHHhcCC---CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEc--CCCCCcceEEECC-C
Confidence 65 578999999999999864 4699999999999999999999974 455566655554 3467788888885 5
Q ss_pred CceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCCC
Q 017417 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (372)
Q Consensus 162 ~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~ 241 (372)
++|..+.+++. ..++++|+|+|++++|+.+.+. . +. ..|+++.++++
T Consensus 151 ~~v~~~~~~~~---~~~~~~Giyi~~~~~l~~l~~~--~--------------------------~~--~~d~~~~l~~~ 197 (221)
T cd06422 151 GRLRRGGGGAV---APFTFTGIQILSPELFAGIPPG--K--------------------------FS--LNPLWDRAIAA 197 (221)
T ss_pred CcEeecccCCC---CceEEEEEEEEcHHHHhhCCcC--c--------------------------cc--HHHHHHHHHHc
Confidence 88999998874 3789999999999999877532 0 00 14677777777
Q ss_pred ceEEEeecchhhhhcCCccccccc
Q 017417 242 KQLYTYETMDFWEQIKTPGMSLKC 265 (372)
Q Consensus 242 ~~v~~~~~~~~w~~i~t~~d~~~a 265 (372)
+++++|..+|+|.+|+||++|.+|
T Consensus 198 ~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 198 GRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred CCeEEEecCCEEEcCCCHHHHhhC
Confidence 889999999999999999998764
No 42
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=2.2e-31 Score=230.78 Aligned_cols=236 Identities=22% Similarity=0.295 Sum_probs=195.5
Q ss_pred CCCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhc-------
Q 017417 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSI------- 72 (372)
Q Consensus 5 ~~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~------- 72 (372)
|++..+|||+||| .||||.|.|...||.||||.+||+|+|+++.+.. |+++++.....+++||...
T Consensus 1 ~~~irKAViPaAG--lGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L 78 (291)
T COG1210 1 MMKIRKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTL 78 (291)
T ss_pred CCcccEEEEEccC--cccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHH
Confidence 4567899999999 9999999999999999999999999999998876 6666666667888887531
Q ss_pred ---c--------CCC--CeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecC---ChHHHHHHHHhcCCc
Q 017417 73 ---S--------NEL--RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF---PLPEMLDAHRNYGGM 136 (372)
Q Consensus 73 ---~--------~~~--~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~---~l~~~l~~~~~~~~~ 136 (372)
. .+. ...+.|++|.++.|.++|+++|..++++ ++|.|+.+|.++.. .+.+|++.+.+.++
T Consensus 79 ~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~---EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~- 154 (291)
T COG1210 79 EKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGD---EPFAVLLPDDLVDSEKPCLKQMIELYEETGG- 154 (291)
T ss_pred HHhCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCC---CceEEEeCCeeecCCchHHHHHHHHHHHhCC-
Confidence 0 001 3568899999999999999999999988 47999999999843 48999999988776
Q ss_pred eEEEEEecCCcccccceEEE----EcCCCCceeEeeecC--CCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhcc
Q 017417 137 GTILVIKVSAESASQFGELV----ADPDTNELLHYTEKP--ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRV 210 (372)
Q Consensus 137 ~~i~~~~~~~~~~~~~~~v~----~~~~~~~v~~i~ek~--~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~ 210 (372)
.++.+.+++.++.+.||.+. .+.+..+|..+.||| +...++++..|.|+++|++|+.|++..+...++-+
T Consensus 155 svi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQ---- 230 (291)
T COG1210 155 SVIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQ---- 230 (291)
T ss_pred cEEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEee----
Confidence 56677788778889999987 332225899999998 56789999999999999999999986544333222
Q ss_pred chhhhhhhcccccccccccccccccccCCCCceEEEeecchhhhhcCCccccccchHHHH
Q 017417 211 SSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (372)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~ 270 (372)
.+|.+..+.+...+++|.++|..+|+|++..|++|+..|.
T Consensus 231 --------------------LTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~ 270 (291)
T COG1210 231 --------------------LTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFA 270 (291)
T ss_pred --------------------HHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHH
Confidence 1788988998999999999999999999999999986654
No 43
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.97 E-value=4.8e-31 Score=234.13 Aligned_cols=217 Identities=29% Similarity=0.476 Sum_probs=178.4
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEecC
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 85 (372)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.. |+|++.+..+.+.+++... ..++.++.+..+
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 77 (223)
T cd06915 1 AVILAGG--LGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIE 77 (223)
T ss_pred CEEecCC--cccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEEC
Confidence 6999999 9999999999999999999999999999999866 7777776667788888652 124555666666
Q ss_pred CcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCcee
Q 017417 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (372)
Q Consensus 86 ~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~v~ 165 (372)
....|++++++.+++++.. +++++++||++++.++.++++.|++.+.++++++.+.. ++..|+.+.+++ +++|.
T Consensus 78 ~~~~G~~~~l~~a~~~~~~---~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~v~~d~-~~~v~ 151 (223)
T cd06915 78 PEPLGTGGAIKNALPKLPE---DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVP--DASRYGNVTVDG-DGRVI 151 (223)
T ss_pred CCCCcchHHHHHHHhhcCC---CCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECC--CCCcceeEEECC-CCeEE
Confidence 6778999999999999843 46999999999988999999999887888888888763 456788888885 58999
Q ss_pred EeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCCCceEE
Q 017417 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245 (372)
Q Consensus 166 ~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~v~ 245 (372)
.+.+|+....+.+.++|+|+|++++|+.+.+.. .. ..+|+++.+..+++|.
T Consensus 152 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~~--------------------------~~---~~~~~~~~l~~~~~v~ 202 (223)
T cd06915 152 AFVEKGPGAAPGLINGGVYLLRKEILAEIPADA--------------------------FS---LEADVLPALVKRGRLY 202 (223)
T ss_pred EEEeCCCCCCCCcEEEEEEEECHHHHhhCCccC--------------------------CC---hHHHHHHHHHhcCcEE
Confidence 999987665678899999999999998775420 00 1156777777667999
Q ss_pred EeecchhhhhcCCccccccc
Q 017417 246 TYETMDFWEQIKTPGMSLKC 265 (372)
Q Consensus 246 ~~~~~~~w~~i~t~~d~~~a 265 (372)
+|+++++|.+|++|+||.+|
T Consensus 203 ~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 203 GFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred EEecCCeEEecCCHHHHHhh
Confidence 99999999999999998876
No 44
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.97 E-value=4.7e-31 Score=238.77 Aligned_cols=221 Identities=25% Similarity=0.453 Sum_probs=177.8
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhcc---CCCCee---
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS---NELRIP--- 79 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~---~~~~~~--- 79 (372)
||||||| +|+||+|+|..+||||+|++|+|||+|+++.+.. |+|++.+..+++.+|+++.. ..+.+.
T Consensus 1 aiilaaG--~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 78 (253)
T cd02524 1 VVILAGG--LGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGT 78 (253)
T ss_pred CEEEecC--CccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecc
Confidence 6899999 9999999999999999999999999999999876 77777777788999987632 122111
Q ss_pred --E------------EEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecC
Q 017417 80 --V------------RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVS 145 (372)
Q Consensus 80 --i------------~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~ 145 (372)
+ .++.+....|++++++++++++..+ ++|++++||++++.++.++++.|.+.++++++++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~--~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~-- 154 (253)
T cd02524 79 NRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDD--ETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH-- 154 (253)
T ss_pred cceeeecccccccceeecccCcccccHHHHHHHHHhcCCC--CeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--
Confidence 1 1111223467999999999998642 469999999999999999999998888888887653
Q ss_pred CcccccceEEEEcCCCCceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhccccccc
Q 017417 146 AESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225 (372)
Q Consensus 146 ~~~~~~~~~v~~~~~~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (372)
.+..|+.+.++. +++|..+.|||... +.++++|+|+|++++|+.+.+. ..
T Consensus 155 --~~~~~g~v~~d~-~g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~--------------------------~~ 204 (253)
T cd02524 155 --PPGRFGELDLDD-DGQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGD--------------------------DT 204 (253)
T ss_pred --CCCcccEEEECC-CCCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccc--------------------------cc
Confidence 356788889886 68999999998653 5689999999999999877542 01
Q ss_pred ccccccccccccCCCCceEEEeecchhhhhcCCccccccchHHHH
Q 017417 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (372)
Q Consensus 226 ~~~~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~ 270 (372)
++ ..|+++.+++++++++|.++|+|.+|+++++|.+++..+.
T Consensus 205 ~~---~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~ 246 (253)
T cd02524 205 VF---EREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWN 246 (253)
T ss_pred hh---hHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHH
Confidence 11 1578888888889999999999999999999999887664
No 45
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.97 E-value=1.1e-30 Score=230.96 Aligned_cols=212 Identities=32% Similarity=0.567 Sum_probs=176.7
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEecC
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 85 (372)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.. |+|++.+..+.+.+++.+. ..++..+.++.+
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~~ 77 (217)
T cd04181 1 AVILAAG--KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVVQ 77 (217)
T ss_pred CEEecCC--ccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEeC
Confidence 6999999 9999999999999999999999999999998876 6777776677888888753 224566777777
Q ss_pred CcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCcee
Q 017417 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (372)
Q Consensus 86 ~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~v~ 165 (372)
....|++++++.+++++.. +++++++||++++.++.++++.|.+.++++++++.+.+ .+..|+.+.+++ +++|.
T Consensus 78 ~~~~g~~~al~~~~~~~~~---~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~d~-~~~v~ 151 (217)
T cd04181 78 EEPLGTAGAVRNAEDFLGD---DDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYGVVELDD-DGRVT 151 (217)
T ss_pred CCCCccHHHHHHhhhhcCC---CCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CCCcceEEEEcC-CCcEE
Confidence 6678999999999999832 57999999999999999999999988889999988764 567889899986 58999
Q ss_pred EeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCCCceEE
Q 017417 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245 (372)
Q Consensus 166 ~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~v~ 245 (372)
.+.|||......++++|+|+|++++|+.+.+... + ..++ ..|+++.++++.+|+
T Consensus 152 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~---~--------------------~~~~---~~~~~~~l~~~~~v~ 205 (217)
T cd04181 152 RFVEKPTLPESNLANAGIYIFEPEILDYIPEILP---R--------------------GEDE---LTDAIPLLIEEGKVY 205 (217)
T ss_pred EEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCC---c--------------------cccc---HHHHHHHHHhcCCEE
Confidence 9999987655689999999999999988765422 0 1111 267888888778999
Q ss_pred EeecchhhhhcC
Q 017417 246 TYETMDFWEQIK 257 (372)
Q Consensus 246 ~~~~~~~w~~i~ 257 (372)
+|+++|+|.+++
T Consensus 206 ~~~~~g~w~dig 217 (217)
T cd04181 206 GYPVDGYWLDIG 217 (217)
T ss_pred EEEcCCEEecCC
Confidence 999999999985
No 46
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.97 E-value=3.1e-30 Score=228.64 Aligned_cols=214 Identities=29% Similarity=0.527 Sum_probs=173.4
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEecC
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 85 (372)
+|||||| +|+||+|+|..+||+|+|++|+|||+|+++.+.. |+|++++..+.+.+|+... ..++.++.++.+
T Consensus 1 ~vIlaaG--~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~~ 77 (220)
T cd06426 1 VVIMAGG--KGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVRE 77 (220)
T ss_pred CEEecCC--CccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-cccCccEEEEEC
Confidence 6899999 9999999999999999999999999999999876 7777777777888888753 345666777776
Q ss_pred CcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCcee
Q 017417 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (372)
Q Consensus 86 ~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~v~ 165 (372)
+.+.|+++++..+.+... ++++|++||+++..++.++++.|++.+.++++++.+.. ....|+.+..+ +++|.
T Consensus 78 ~~~~g~~~~l~~~~~~~~----~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~d--~~~v~ 149 (220)
T cd06426 78 DKPLGTAGALSLLPEKPT----DPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE--VQVPYGVVETE--GGRIT 149 (220)
T ss_pred CCCCcchHHHHHHHhhCC----CCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC--CCCcceEEEEC--CCEEE
Confidence 667899999987776552 46999999998888999999999888888888887743 34668888887 37999
Q ss_pred EeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCCC-ceE
Q 017417 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-KQL 244 (372)
Q Consensus 166 ~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~-~~v 244 (372)
.+.|||.. +.++++|+|+|++.+++.+.+.. .+ .+ +++++.+.++ .+|
T Consensus 150 ~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~~~---------------------------~~-~l-~~~~~~~i~~~~~i 198 (220)
T cd06426 150 SIEEKPTH--SFLVNAGIYVLEPEVLDLIPKNE---------------------------FF-DM-PDLIEKLIKEGKKV 198 (220)
T ss_pred EEEECCCC--CCeEEEEEEEEcHHHHhhcCCCC---------------------------Cc-CH-HHHHHHHHHCCCcE
Confidence 99998754 57889999999999998764310 01 11 4666666544 569
Q ss_pred EEeecchhhhhcCCccccccch
Q 017417 245 YTYETMDFWEQIKTPGMSLKCS 266 (372)
Q Consensus 245 ~~~~~~~~w~~i~t~~d~~~a~ 266 (372)
.+|+++++|.+++||++|.+|+
T Consensus 199 ~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 199 GVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred EEEEeCCeEEeCCCHHHHHhhC
Confidence 9999999999999999988864
No 47
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.95 E-value=1.4e-27 Score=213.01 Aligned_cols=220 Identities=21% Similarity=0.314 Sum_probs=160.9
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEecC
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 85 (372)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.+|+... .++.+.+..+
T Consensus 1 aiIlAaG--~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~ 75 (229)
T cd02523 1 AIILAAG--RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPD 75 (229)
T ss_pred CEEEecc--CccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcc
Confidence 6999999 9999999999999999999999999999999876 6777777777888888642 2344433333
Q ss_pred CcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCcee
Q 017417 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (372)
Q Consensus 86 ~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~v~ 165 (372)
....|++++++.+++++. +++++++||+++.. ++++.|.+.++++++++.+........++....+ .+++.
T Consensus 76 ~~~~g~~~s~~~~~~~~~----~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 146 (229)
T cd02523 76 YAETNNIYSLYLARDFLD----EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDLDD--AGVLL 146 (229)
T ss_pred hhhhCcHHHHHHHHHHcC----CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeeecC--ccceE
Confidence 346899999999999983 46999999999854 5666677778888888887433333444433322 36788
Q ss_pred EeeecCCCcc-cCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCC--Cc
Q 017417 166 HYTEKPETFV-SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG--KK 242 (372)
Q Consensus 166 ~i~ek~~~~~-~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~--~~ 242 (372)
.+.+|+..+. ..+.++|+|+|++++|+.+.+........ ....++ .+++++.+.+ +.
T Consensus 147 ~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~-----------------~~~~~~---~~d~i~~l~~~~~~ 206 (229)
T cd02523 147 GIISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEA-----------------GRVNLY---YEDALQRLISEEGV 206 (229)
T ss_pred eecccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhc-----------------cccccc---HHHHHHHHHhhcCe
Confidence 8888875443 56789999999999999876542211100 001112 1577777765 45
Q ss_pred eEEEeecchhhhhcCCccccccc
Q 017417 243 QLYTYETMDFWEQIKTPGMSLKC 265 (372)
Q Consensus 243 ~v~~~~~~~~w~~i~t~~d~~~a 265 (372)
+++.+.. ++|.+|++|+||.+|
T Consensus 207 ~v~~~~~-~~w~dI~~~ed~~~a 228 (229)
T cd02523 207 KVKDISD-GFWYEIDDLEDLERA 228 (229)
T ss_pred eEEEcCC-CCEEEeCCHHHHHhh
Confidence 5666666 999999999999876
No 48
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=6.8e-27 Score=206.66 Aligned_cols=176 Identities=23% Similarity=0.438 Sum_probs=140.7
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCC-----e
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELR-----I 78 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~-----~ 78 (372)
++||||||| .|+||+|+|..+||||+||+|+|||+|+|+++.+ |+|++.+..+++.+|+++. ..|+ .
T Consensus 1 ~~aiIla~G--~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~-~~~~~~~~~~ 77 (217)
T cd04197 1 LQAVVLADS--FNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKS-KWSKPKSSLM 77 (217)
T ss_pred CeEEEEcCC--CcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhc-cccccccCcc
Confidence 579999999 9999999999999999999999999999999877 7777777788899999874 2222 3
Q ss_pred eEEEecCCcccChHHHHHHH--HHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhc-----CCceEEEEEecCCccc--
Q 017417 79 PVRYLREDKPHGSAGALYNF--RDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNY-----GGMGTILVIKVSAESA-- 149 (372)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~--~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~-----~~~~~i~~~~~~~~~~-- 149 (372)
.+.++.+.+..|+++++... ...+. ++|++++||++++.++.++++.|++. ++++|+++.++.....
T Consensus 78 ~i~~~~~~~~~~~~~al~~~~~~~~~~----~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~ 153 (217)
T cd04197 78 IVIIIMSEDCRSLGDALRDLDAKGLIR----GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTR 153 (217)
T ss_pred eEEEEeCCCcCccchHHHHHhhccccC----CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccc
Confidence 46666666677888887543 33443 35999999999999999999999873 7888988888753331
Q ss_pred --ccceEEEEcCCCCceeEeeecCCCc--------------------ccCceeeeEEEeCHhhH
Q 017417 150 --SQFGELVADPDTNELLHYTEKPETF--------------------VSDLINCGVYVFTPDIF 191 (372)
Q Consensus 150 --~~~~~v~~~~~~~~v~~i~ek~~~~--------------------~~~~~~~Giy~~~~~~~ 191 (372)
..++.+.+++++++|+.+.|||..+ ++++.++|+|+|+++++
T Consensus 154 ~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 154 RTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred cCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 2356788886568999999987433 37899999999999864
No 49
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.95 E-value=3.4e-27 Score=206.01 Aligned_cols=182 Identities=28% Similarity=0.526 Sum_probs=144.3
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCc-chhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCee-----
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP----- 79 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~----- 79 (372)
||||||| +|+||+|+|.++||+|+|++|+ |||+|+++++.. ++|++++..+++.+|+.+. ..|+.+
T Consensus 1 avILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 77 (200)
T cd02508 1 AIILAGG--EGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGG 77 (200)
T ss_pred CEEeCCC--CCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCC
Confidence 6999999 9999999999999999999999 999999999876 7777777778898998753 333332
Q ss_pred EEEec------CCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccce
Q 017417 80 VRYLR------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (372)
Q Consensus 80 i~~~~------~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 153 (372)
+.++. ++...|++++++++.++++..+.++|++++||++.+.++.++++.|++.++++++++.
T Consensus 78 ~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~----------- 146 (200)
T cd02508 78 LFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK----------- 146 (200)
T ss_pred EEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-----------
Confidence 22222 3457999999999999996433367999999999999999999999888877877664
Q ss_pred EEEEcCCCCceeEeeecCCCcccCceeeeEEEeCHhhHHHh-hhcccccchhhhhhccchhhhhhhcccccccccccccc
Q 017417 154 ELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAI-QGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQ 232 (372)
Q Consensus 154 ~v~~~~~~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (372)
+++|+|+|++++|..+ .+.... . ..+ +.+
T Consensus 147 -------------------------~~~g~yi~~~~~~~~~l~~~~~~-~---------------------~~~---~~~ 176 (200)
T cd02508 147 -------------------------ASMGIYIFSKDLLIELLEEDAAD-G---------------------SHD---FGK 176 (200)
T ss_pred -------------------------hcCEEEEEEHHHHHHHHHHHhcc-C---------------------cch---hHH
Confidence 7799999999998644 432110 0 111 127
Q ss_pred cccccCCCCceEEEeecchhhhhc
Q 017417 233 DILSPLAGKKQLYTYETMDFWEQI 256 (372)
Q Consensus 233 d~l~~~~~~~~v~~~~~~~~w~~i 256 (372)
|+++.++++.++++|.++|+|.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 889988888999999999999885
No 50
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.94 E-value=2.6e-26 Score=205.08 Aligned_cols=218 Identities=22% Similarity=0.351 Sum_probs=157.5
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccch---HHHHHHHhhccCCCCeeEEE
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEE---REFALYVSSISNELRIPVRY 82 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~---~~i~~~~~~~~~~~~~~i~~ 82 (372)
+|||||| +|+||+|+|..+||||+|++|+|||+|+++.+.. +++++.... ..+..++.... .+..+.+
T Consensus 1 ~iIlAaG--~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~~--~~~~i~~ 76 (231)
T cd04183 1 IIIPMAG--LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLLA--PNATVVE 76 (231)
T ss_pred CEEECCc--CCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHhC--CCCEEEE
Confidence 4899999 9999999999999999999999999999999877 455543211 11222222211 1344433
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCC
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~ 162 (372)
.+....|++++++.++..++.+ +++++++||+++..++.++++.|.+.+.+.++++... ....|+.+.+++ ++
T Consensus 77 -~~~~~~g~~~~l~~a~~~l~~~--~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~v~~d~-~~ 149 (231)
T cd04183 77 -LDGETLGAACTVLLAADLIDND--DPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWSYVKLDE-NG 149 (231)
T ss_pred -eCCCCCcHHHHHHHHHhhcCCC--CCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeEEEEECC-CC
Confidence 3445789999999999998533 4699999999999899999988877777777766654 345688888886 68
Q ss_pred ceeEeeecCCCcccCceeeeEEEeCHh-hH-HHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCCC
Q 017417 163 ELLHYTEKPETFVSDLINCGVYVFTPD-IF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (372)
Q Consensus 163 ~v~~i~ek~~~~~~~~~~~Giy~~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~ 240 (372)
+|..+.+|+. .+.++++|+|+|+++ .| +.+.+...... ....+++ ..++++.+.+
T Consensus 150 ~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~-------------------~~~~~~~--~~d~i~~~~~ 206 (231)
T cd04183 150 RVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDD-------------------SVNGEFY--ISPLYNELIL 206 (231)
T ss_pred CEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcc-------------------cccCcEE--EhHHHHHHHH
Confidence 9999988743 367899999999986 43 44443211100 0012222 2578887765
Q ss_pred C-ceEEEeec-chhhhhcCCcccc
Q 017417 241 K-KQLYTYET-MDFWEQIKTPGMS 262 (372)
Q Consensus 241 ~-~~v~~~~~-~~~w~~i~t~~d~ 262 (372)
+ .+|++|.+ +++|.+++||+||
T Consensus 207 ~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 207 DGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cCCEEEEEEeccccEEEcCChHhc
Confidence 5 57999999 6999999999986
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.93 E-value=1.2e-24 Score=198.46 Aligned_cols=238 Identities=17% Similarity=0.228 Sum_probs=158.9
Q ss_pred eeEEEEeCCCCCCCccccCcc-cCCCCCcccCC-cchhhhhHhhcce------EEEEcccc-hHHHHHHHhhccCCCCee
Q 017417 9 VVAVIMVGGPTKGTRFRPLSL-NIPKPLFPLGG-QPMVHHPISACKR------IYLVGFYE-EREFALYVSSISNELRIP 79 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~-~~pK~llpv~g-~pli~~~l~~l~~------i~vv~~~~-~~~i~~~~~~~~~~~~~~ 79 (372)
|++|||||| .|+||+|+|. .+||+|+|++| +|||+|+++++.. |+|+++.. ...+.+++.. ....
T Consensus 1 m~~vILAgG--~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~ 74 (274)
T cd02509 1 IYPVILAGG--SGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPE 74 (274)
T ss_pred CEEEEEccc--ccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCC
Confidence 589999999 9999999996 79999999999 9999999999864 66666543 3445556643 1123
Q ss_pred EEEecCCcccChHHHHHHHHHHhhcc-CCCeEEEEcCCeeec--CChHHHHHHHHh---cCCceEEEEEecCCcccccce
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMED-NPSHIFLLNCDVCCS--FPLPEMLDAHRN---YGGMGTILVIKVSAESASQFG 153 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~-~~~~vlv~~gD~i~~--~~l~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~ 153 (372)
+.++.++...|+++++..++.++... ..+.++|++||+++. .++.++++.+.+ .+..+|+.+.+. .....||
T Consensus 75 ~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~--~~~t~yG 152 (274)
T cd02509 75 ENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPT--RPETGYG 152 (274)
T ss_pred ceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeec--CCCCCeE
Confidence 55666777899999999999988632 125799999999985 457777765443 456777777775 3357899
Q ss_pred EEEEcCCC-C---ceeEeeecCCCc--------ccCceeeeEEEeCH-hhHHHhhhcccccchhhhhhccchhhhhhhcc
Q 017417 154 ELVADPDT-N---ELLHYTEKPETF--------VSDLINCGVYVFTP-DIFNAIQGVSSQRKDRENLRRVSSFEALQSAT 220 (372)
Q Consensus 154 ~v~~~~~~-~---~v~~i~ek~~~~--------~~~~~~~Giy~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (372)
.+..+.+. + +|.+|.|||... ...++++|+|+|++ .+++.|.+..++...... .+.....
T Consensus 153 yI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~-------~~~~~~~ 225 (274)
T cd02509 153 YIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALE-------KALAAAG 225 (274)
T ss_pred EEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHH-------HHHHhcC
Confidence 99988532 2 899999999632 23478999999995 455555554443221110 0000000
Q ss_pred cc-----cccccccccccccc--cCCCCceEEEeecchhhhhcCCccc
Q 017417 221 RN-----LTTDFVRLDQDILS--PLAGKKQLYTYETMDFWEQIKTPGM 261 (372)
Q Consensus 221 ~~-----~~~~~~~~~~d~l~--~~~~~~~v~~~~~~~~w~~i~t~~d 261 (372)
.. ....|..+...-++ .+++..++++++.+..|.|+|+++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 226 TDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred CchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 00 00011111111121 1345567899999999999999875
No 52
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.91 E-value=7.1e-24 Score=188.99 Aligned_cols=213 Identities=23% Similarity=0.385 Sum_probs=156.8
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEecC
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 85 (372)
||||||| .|+||++ .+||+|+|++|+|||+|+++.+.. ++|+++++.+.+.+++.. ++ +.++.+
T Consensus 1 aiIlaaG--~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~----~~--~~~~~~ 69 (229)
T cd02540 1 AVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN----PN--VEFVLQ 69 (229)
T ss_pred CEEEeCC--CCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC----CC--cEEEEC
Confidence 6999999 9999997 789999999999999999999876 666666666677777754 22 344555
Q ss_pred CcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCc
Q 017417 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (372)
Q Consensus 86 ~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~ 163 (372)
....|++++++++++++.. +.+.+++++||.++ ..++.++++.|.+.++++++.+.+. +++..|+.+..+. +++
T Consensus 70 ~~~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~-~~~ 145 (229)
T cd02540 70 EEQLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAEL--EDPTGYGRIIRDG-NGK 145 (229)
T ss_pred CCCCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCCccEEEEcC-CCC
Confidence 6668999999999999863 12579999999965 5679999999887777777777665 3567788877774 588
Q ss_pred eeEeeecCCCcc----cCceeeeEEEeCHhh-HHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccC
Q 017417 164 LLHYTEKPETFV----SDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (372)
Q Consensus 164 v~~i~ek~~~~~----~~~~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ 238 (372)
|..+.+++.... ...+++|+|+|++.. ++.+........ ...++ ..|+++.+
T Consensus 146 v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~---------------------~~~~~--~~d~~~~~ 202 (229)
T cd02540 146 VLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNA---------------------QGEYY--LTDIIALA 202 (229)
T ss_pred EEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccC---------------------CCcEE--HHHHHHHH
Confidence 999998764221 267899999999754 455554321110 11121 16777777
Q ss_pred CCC-ceEEEeecchhh--hhcCCccc
Q 017417 239 AGK-KQLYTYETMDFW--EQIKTPGM 261 (372)
Q Consensus 239 ~~~-~~v~~~~~~~~w--~~i~t~~d 261 (372)
.+. .+|++|.++||| +.+++|.+
T Consensus 203 ~~~g~~v~~~~~~~~~~~~~~~~~~~ 228 (229)
T cd02540 203 VADGLKVAAVLADDEEEVLGVNDRVQ 228 (229)
T ss_pred HHCCCEEEEEEcCCcceEecCCChHh
Confidence 654 679999999875 55667654
No 53
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.91 E-value=8.6e-24 Score=186.56 Aligned_cols=177 Identities=26% Similarity=0.496 Sum_probs=137.5
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccC-----CCCe
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN-----ELRI 78 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~-----~~~~ 78 (372)
++||||||| .|+||.|+|...||+|+|++|+|||+|+++++.. |+|++.++.+++.+++..... ...+
T Consensus 1 ~~avIlagg--~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v 78 (216)
T cd02507 1 FQAVVLADG--FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIV 78 (216)
T ss_pred CeEEEEeCC--CccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceE
Confidence 589999999 9999999999999999999999999999999876 777777777778888865321 1123
Q ss_pred eEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHH--HHhcCCceEEEEEecCCcc-------c
Q 017417 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDA--HRNYGGMGTILVIKVSAES-------A 149 (372)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~--~~~~~~~~~i~~~~~~~~~-------~ 149 (372)
.+.+..+....|++++++.+++++.+ +|++++||++++.++.+++++ +...++++++++....... .
T Consensus 79 ~~~~~~~~~~~Gta~~l~~~~~~i~~----dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (216)
T cd02507 79 DVITSDLCESAGDALRLRDIRGLIRS----DFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKT 154 (216)
T ss_pred EEEEccCCCCCccHHHHHHHhhcCCC----CEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccC
Confidence 44455556789999999999998843 599999999999999999975 4455666776666644222 4
Q ss_pred ccceEEEEcCCC--CceeEeeecCCC------------------cccCceeeeEEEeCHhhH
Q 017417 150 SQFGELVADPDT--NELLHYTEKPET------------------FVSDLINCGVYVFTPDIF 191 (372)
Q Consensus 150 ~~~~~v~~~~~~--~~v~~i~ek~~~------------------~~~~~~~~Giy~~~~~~~ 191 (372)
..++.+.+++++ .++..+.+++.. .++++.++|+|+|+++++
T Consensus 155 ~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 155 EEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 557888898866 466666665432 367899999999999864
No 54
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.91 E-value=1.1e-23 Score=185.79 Aligned_cols=177 Identities=29% Similarity=0.485 Sum_probs=139.5
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEccc-chHHHHHHHhhcc--CCCCeeE
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSIS--NELRIPV 80 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~-~~~~i~~~~~~~~--~~~~~~i 80 (372)
|+||||||| .|+||+|+|...||+|+|++|+|||+|+++++.. |+|++++ ..+.+.+++.... ......+
T Consensus 1 ~~aVILAgG--~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~ 78 (214)
T cd04198 1 FQAVILAGG--GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDE 78 (214)
T ss_pred CEEEEEeCC--CCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeE
Confidence 589999999 9999999999999999999999999999999886 6666654 3355777776531 1112334
Q ss_pred EEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcc-----------c
Q 017417 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAES-----------A 149 (372)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~-----------~ 149 (372)
.+..+....|++++++.+.+.+. ++|++++||.+++.++.++++.|++.++.+|+++++..... +
T Consensus 79 ~~~~~~~~~gt~~al~~~~~~i~----~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 154 (214)
T cd04198 79 VTIVLDEDMGTADSLRHIRKKIK----KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKA 154 (214)
T ss_pred EEecCCCCcChHHHHHHHHhhcC----CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCC
Confidence 45556677999999999999874 35999999999999999999999999999999988864222 1
Q ss_pred ccceEEEEcCCCCceeEeeecC------------------CCcccCceeeeEEEeCHhhH
Q 017417 150 SQFGELVADPDTNELLHYTEKP------------------ETFVSDLINCGVYVFTPDIF 191 (372)
Q Consensus 150 ~~~~~v~~~~~~~~v~~i~ek~------------------~~~~~~~~~~Giy~~~~~~~ 191 (372)
..+..+.+++++++++.+.... -..++++.++++|+|+++++
T Consensus 155 ~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 155 DERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 2356788888788999887621 12368999999999998763
No 55
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=3.1e-23 Score=186.86 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=153.3
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEE
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
++.+|||||| .++|| + +|+|+|++|+|||+|+++.+.. |+|+++. +.+..++.. ++.++.+
T Consensus 2 ~~~~iIlA~g--~S~R~-~-----~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~----~~~~v~~ 67 (245)
T PRK05450 2 KFLIIIPARY--ASTRL-P-----GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEA----FGGEVVM 67 (245)
T ss_pred ceEEEEecCC--CCCCC-C-----CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH----cCCEEEE
Confidence 5789999999 99999 3 6999999999999999998875 6666542 456666643 2455555
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecC----CcccccceEEE
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVS----AESASQFGELV 156 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~----~~~~~~~~~v~ 156 (372)
..+....|+.... .+...+...+.+.+++++||+++ ..++.++++.+...++++++++.+.. ..++..++.+
T Consensus 68 ~~~~~~~gt~~~~-~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 145 (245)
T PRK05450 68 TSPDHPSGTDRIA-EAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV- 145 (245)
T ss_pred CCCcCCCchHHHH-HHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-
Confidence 5555555665433 34434421122579999999976 45689999988776666776666542 1344556644
Q ss_pred EcCCCCceeEeeecCCC----------cccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccc
Q 017417 157 ADPDTNELLHYTEKPET----------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (372)
Q Consensus 157 ~~~~~~~v~~i~ek~~~----------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (372)
++. +|+|..|.|||.. ..+++.++|+|+|++++++.+.+..+..... . +
T Consensus 146 ~d~-~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~-------------------~-~ 204 (245)
T PRK05450 146 LDA-DGRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEK-------------------I-E 204 (245)
T ss_pred eCC-CCcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCcccc-------------------c-h
Confidence 775 6899999998731 1358999999999999999887642221100 0 0
Q ss_pred cccccccccccCCCCceEEEeecch-hhhhcCCccccccchHHH
Q 017417 227 FVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGLY 269 (372)
Q Consensus 227 ~~~~~~d~l~~~~~~~~v~~~~~~~-~w~~i~t~~d~~~a~~~~ 269 (372)
. .+.++.+.++.+|+++..+| +|.+|++|+||.+|+..+
T Consensus 205 ~----~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 205 S----LEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred h----HHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 0 11123345667899999996 999999999999987654
No 56
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.89 E-value=2.8e-22 Score=195.48 Aligned_cols=242 Identities=15% Similarity=0.209 Sum_probs=154.8
Q ss_pred eeEEEEeCCCCCCCccccCccc-CCCCCcccCC-cchhhhhHhhcce-----EEEEcccc-hHHHHHHHhhccCCCCee-
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLN-IPKPLFPLGG-QPMVHHPISACKR-----IYLVGFYE-EREFALYVSSISNELRIP- 79 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~-~pK~llpv~g-~pli~~~l~~l~~-----i~vv~~~~-~~~i~~~~~~~~~~~~~~- 79 (372)
|.+|||||| .|+||+|+|.. +||+|+|+.| +|||+|+++++.. ++|+++.. ...+.+.+... +.+
T Consensus 1 ~~~vILAgG--~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~----~~~~ 74 (468)
T TIGR01479 1 IIPVILAGG--SGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI----GKLA 74 (468)
T ss_pred CEEEEecCc--ccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc----CCCc
Confidence 579999999 99999999986 8999999977 8999999999866 55555432 22344444432 222
Q ss_pred EEEecCCcccChHHHHHHHHHHhhc--cCCCeEEEEcCCeeecC--ChHHHHHHH---HhcCCceEEEEEecCCcccccc
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIME--DNPSHIFLLNCDVCCSF--PLPEMLDAH---RNYGGMGTILVIKVSAESASQF 152 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~--~~~~~vlv~~gD~i~~~--~l~~~l~~~---~~~~~~~~i~~~~~~~~~~~~~ 152 (372)
..++.++..+||+.++..+..++.. ...+.++|++||+++.. +|.++++.+ .+.+..+++...+. .....|
T Consensus 75 ~~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~--~p~t~Y 152 (468)
T TIGR01479 75 SNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPT--HPETGY 152 (468)
T ss_pred ceEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCC--CCCCCc
Confidence 2466777889999999887776632 11246999999988743 488887764 33344555555543 345789
Q ss_pred eEEEEcC-----CCCceeEeeecCCCc--------ccCceeeeEEEeCH-hhHHHhhhcccccchhhhhhccchhhhhhh
Q 017417 153 GELVADP-----DTNELLHYTEKPETF--------VSDLINCGVYVFTP-DIFNAIQGVSSQRKDRENLRRVSSFEALQS 218 (372)
Q Consensus 153 ~~v~~~~-----~~~~v~~i~ek~~~~--------~~~~~~~Giy~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 218 (372)
|.+..++ ..++|.+|.|||... ...++|+|+|+|++ .+++.|.+..++...... .++..
T Consensus 153 GyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~-------~~~~~ 225 (468)
T TIGR01479 153 GYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACE-------AAVEA 225 (468)
T ss_pred eEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHH-------HHHHh
Confidence 9999873 236899999998632 13689999999994 444455544333111110 00000
Q ss_pred c-ccccc-----cccccccccccc-c-CCCCceEEEeecchhhhhcCCccccccc
Q 017417 219 A-TRNLT-----TDFVRLDQDILS-P-LAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (372)
Q Consensus 219 ~-~~~~~-----~~~~~~~~d~l~-~-~~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (372)
. +.... .-|..+...-++ . +++..++++.+.+..|.|+|+|+++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~ 280 (468)
T TIGR01479 226 SEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEI 280 (468)
T ss_pred ccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHh
Confidence 0 00000 001000011111 1 3344679999999999999999987764
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.88 E-value=7.3e-22 Score=177.22 Aligned_cols=215 Identities=18% Similarity=0.214 Sum_probs=148.4
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCeeEE
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (372)
++.+|||||| .++||+ ||+|+|++|+|||+|+++++.. |+|++.. +.+.+++.. +++++.
T Consensus 1 ~~~~iIlA~g--~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~ 66 (239)
T cd02517 1 KVIVVIPARY--ASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVV 66 (239)
T ss_pred CEEEEEecCC--CCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEE
Confidence 3679999999 999995 6999999999999999998764 5666543 456666654 234555
Q ss_pred EecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhc-CCceEEEEEecCC-c---ccccceE
Q 017417 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY-GGMGTILVIKVSA-E---SASQFGE 154 (372)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~-~~~~~i~~~~~~~-~---~~~~~~~ 154 (372)
+..+....|+++ +..+...+.. ..+.+++++||+++ ..++..+++.+.+. +.++++++.+... . ....++
T Consensus 67 ~~~~~~~~gt~~-~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 143 (239)
T cd02517 67 MTSPDHPSGTDR-IAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVK- 143 (239)
T ss_pred EcCcccCchhHH-HHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCE-
Confidence 544444567764 6666666642 12579999999965 55789999988766 6778888777532 1 122233
Q ss_pred EEEcCCCCceeEeeecCC-------CcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhccccccccc
Q 017417 155 LVADPDTNELLHYTEKPE-------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (372)
Q Consensus 155 v~~~~~~~~v~~i~ek~~-------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (372)
+..+. +++|..|.+++. .+...++++|+|+|++++|+.+.+.... ++
T Consensus 144 v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~-------------------------~~ 197 (239)
T cd02517 144 VVLDK-DGYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPS-------------------------PL 197 (239)
T ss_pred EEECC-CCCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCc-------------------------hh
Confidence 55664 578988876542 1136789999999999999987653111 00
Q ss_pred ccccccc---cccCCCCceEEEeecchhhhhcCCccccccchH
Q 017417 228 VRLDQDI---LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSG 267 (372)
Q Consensus 228 ~~~~~d~---l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~ 267 (372)
.. .+. +..+.++.+|+++..+++|.+|++|+||.+|++
T Consensus 198 ~~--~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 198 EQ--IESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred hh--hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 00 122 222334556999999999999999999998754
No 58
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=4.8e-22 Score=169.84 Aligned_cols=220 Identities=16% Similarity=0.257 Sum_probs=142.8
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEc-ccchHHHHHHHhhccCCCCeeE
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIPV 80 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~-~~~~~~i~~~~~~~~~~~~~~i 80 (372)
+.|+||||||| .|+||+| +.||||+.++|+++|+|+|++|.+ ++||+ .+..+.+..++.+++- ..++
T Consensus 2 ~~~kavILAAG--~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~--~~~i 74 (239)
T COG1213 2 HPMKAVILAAG--FGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYPF--NAKI 74 (239)
T ss_pred CceeEEEEecc--cccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCCc--ceEE
Confidence 46899999999 9999999 899999999999999999999987 46655 5556667777765421 2333
Q ss_pred EEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcC
Q 017417 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (372)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~ 159 (372)
.+.......+++.|++.+.++++.. |++++||+++... ++.++++- +...++...........-..+..
T Consensus 75 v~N~~y~ktN~~~Sl~~akd~~~~~----fii~~sD~vye~~~~e~l~~a~----~~~li~d~~~~~~~~~ea~kv~~-- 144 (239)
T COG1213 75 VINSDYEKTNTGYSLLLAKDYMDGR----FILVMSDHVYEPSILERLLEAP----GEGLIVDRRPRYVGVEEATKVKD-- 144 (239)
T ss_pred EeCCCcccCCceeEEeeehhhhcCc----EEEEeCCEeecHHHHHHHHhCc----CCcEEEeccccccccCceeEEEe--
Confidence 3333344456699999999999864 9999999999654 45554332 22223222211000111122333
Q ss_pred CCCceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCC
Q 017417 160 DTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239 (372)
Q Consensus 160 ~~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~ 239 (372)
++|++..++++-. ..+..++|++.+++++|..+.+...+...... .++.....
T Consensus 145 e~G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~~-------------------------~~~~~~~~ 197 (239)
T COG1213 145 EGGRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERSEYDY-------------------------REVEKEAG 197 (239)
T ss_pred cCCEEehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhhhHHH-------------------------HHHHHHhC
Confidence 3689999998755 35668999999999999887765433211110 11111111
Q ss_pred -CCceEEEeecchhhhhcCCccccccchHHHH
Q 017417 240 -GKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (372)
Q Consensus 240 -~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~ 270 (372)
....+.......+|.+|++|+|+.+|.....
T Consensus 198 ~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~ 229 (239)
T COG1213 198 LPFTEVDIHVDGLFWMEVDTPEDLERARKYLV 229 (239)
T ss_pred CceEEeeccccCceeEecCCHHHHHHHHHHHH
Confidence 1111221211358999999999999876543
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.86 E-value=1.2e-20 Score=169.12 Aligned_cols=215 Identities=18% Similarity=0.228 Sum_probs=145.4
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCeeEE
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (372)
++.+||||+| .++||+ +|+|+|++|+|||+|+++.+.+ |+|++.. +.+.+++.. ++.++.
T Consensus 2 ~~~aiIlA~g--~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARY--GSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVV 67 (238)
T ss_pred cEEEEEecCC--CCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEE
Confidence 4789999999 899994 5999999999999999998765 6666643 456777654 234554
Q ss_pred EecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCC-ceEEEEEecCC--c--ccccceE
Q 017417 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGG-MGTILVIKVSA--E--SASQFGE 154 (372)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~-~~~i~~~~~~~--~--~~~~~~~ 154 (372)
+..+....|++ .+..++..++. +.+++++||+++ ..++.++++.+.+.+. ++++++.+... . ++..++
T Consensus 68 ~~~~~~~~g~~-~~~~a~~~~~~---d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~- 142 (238)
T PRK13368 68 MTSDDHLSGTD-RLAEVMLKIEA---DIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVK- 142 (238)
T ss_pred ecCccCCCccH-HHHHHHHhCCC---CEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCE-
Confidence 44444445665 56666666632 579999999876 5679999998866543 45555554421 1 233333
Q ss_pred EEEcCCCCceeEeeecCCC------cccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccc
Q 017417 155 LVADPDTNELLHYTEKPET------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (372)
Q Consensus 155 v~~~~~~~~v~~i~ek~~~------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (372)
+.+++ +|++..+.+++.. +...+.++|+|+|++++|+.+.+..... ..
T Consensus 143 ~~~~~-~g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~-------------------------~~ 196 (238)
T PRK13368 143 VVVDK-NGDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETP-------------------------LE 196 (238)
T ss_pred EEECC-CCCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCCh-------------------------hh
Confidence 34443 5889888865311 1144789999999999999875421110 00
Q ss_pred ccc-ccccccCCCCceEEEeecchhhhhcCCccccccchH
Q 017417 229 RLD-QDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSG 267 (372)
Q Consensus 229 ~~~-~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~ 267 (372)
.+. .+++..+..+.+++++..+++|.||++|+||.+|+.
T Consensus 197 ~~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 197 QIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence 000 144423335567999998899999999999998765
No 60
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=4.6e-19 Score=157.82 Aligned_cols=244 Identities=15% Similarity=0.181 Sum_probs=157.4
Q ss_pred CeeEEEEeCCCCCCCccccCc-ccCCCCCcccCC-cchhhhhHhhcce------EEEEccc-chHHHHHHHhhccCCCCe
Q 017417 8 KVVAVIMVGGPTKGTRFRPLS-LNIPKPLFPLGG-QPMVHHPISACKR------IYLVGFY-EEREFALYVSSISNELRI 78 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt-~~~pK~llpv~g-~pli~~~l~~l~~------i~vv~~~-~~~~i~~~~~~~~~~~~~ 78 (372)
.|..|||||| .|+||+||+ +.+||++|++.+ ++|++.+++++.. ++|+++. +...+.+.+.+.... .
T Consensus 1 ~~~pvIlaGG--~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~--~ 76 (333)
T COG0836 1 MMIPVILAGG--SGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIE--N 76 (333)
T ss_pred CceeEEEeCC--CccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhc--c
Confidence 3689999999 999999998 579999999955 8999999999876 6666654 333455555543222 1
Q ss_pred eEEEecCCcccChHHHHHHHHHHhhccC-CCeEEEEcCCeeecCC--hHHHHHHHHhc---CCceEEEEEecCCcccccc
Q 017417 79 PVRYLREDKPHGSAGALYNFRDLIMEDN-PSHIFLLNCDVCCSFP--LPEMLDAHRNY---GGMGTILVIKVSAESASQF 152 (372)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~l~~~~-~~~vlv~~gD~i~~~~--l~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~ 152 (372)
...++.++..+.|+.|+..+.-.+.... +.-++|++.|++.... +.+.++...+. +..+|+...+. ...+.|
T Consensus 77 ~~~illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt--~PeTGY 154 (333)
T COG0836 77 AAGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPT--RPETGY 154 (333)
T ss_pred ccceEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCC--CCccCc
Confidence 1125667777899999887766654432 2469999999998443 66666654332 33344444443 234789
Q ss_pred eEEEEcCC-----CCceeEeeecCCC--------cccCceeeeEEEeC-HhhHHHhhhcccccchhhhhhccchhhhhhh
Q 017417 153 GELVADPD-----TNELLHYTEKPET--------FVSDLINCGVYVFT-PDIFNAIQGVSSQRKDRENLRRVSSFEALQS 218 (372)
Q Consensus 153 ~~v~~~~~-----~~~v~~i~ek~~~--------~~~~~~~~Giy~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 218 (372)
|+|...+. ..+|.+|.|||+. ....++|+|+|+|+ ..++++++...++-...+. ++...
T Consensus 155 GYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~-------~~~~~ 227 (333)
T COG0836 155 GYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAE-------KAFEA 227 (333)
T ss_pred ceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHH-------HHHhc
Confidence 99987541 3479999999962 24578999999999 5677887776655322221 00000
Q ss_pred cc-----ccccccccccccccccc--CCCCceEEEeecchhhhhcCCcccccc
Q 017417 219 AT-----RNLTTDFVRLDQDILSP--LAGKKQLYTYETMDFWEQIKTPGMSLK 264 (372)
Q Consensus 219 ~~-----~~~~~~~~~~~~d~l~~--~~~~~~v~~~~~~~~w~~i~t~~d~~~ 264 (372)
.. +.....|..+...-++. +++..++++++.+=.|.|+|++..+.+
T Consensus 228 ~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~ 280 (333)
T COG0836 228 AVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWE 280 (333)
T ss_pred ccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHH
Confidence 00 00011111111122222 446678999999999999999975433
No 61
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.80 E-value=9.9e-19 Score=169.12 Aligned_cols=243 Identities=15% Similarity=0.194 Sum_probs=155.0
Q ss_pred CeeEEEEeCCCCCCCccccCccc-CCCCCcccCC-cchhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCee
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLN-IPKPLFPLGG-QPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIP 79 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~-~pK~llpv~g-~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~ 79 (372)
+|.+|||||| .|+||+|++.. +||+|+|+.| +|||+++++++.. ++|++..+...+.+.+..... .+
T Consensus 5 ~~~~vIlaGG--~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~~ 79 (478)
T PRK15460 5 KLYPVVMAGG--SGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---LT 79 (478)
T ss_pred ceEEEEECCC--CccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---cc
Confidence 4899999999 99999999987 7999999965 6999999999865 555555455556666654321 11
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccC---CCeEEEEcCCeeecC--ChHHHHHHHHh---cCCceEEEEEecCCccccc
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDN---PSHIFLLNCDVCCSF--PLPEMLDAHRN---YGGMGTILVIKVSAESASQ 151 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~---~~~vlv~~gD~i~~~--~l~~~l~~~~~---~~~~~~i~~~~~~~~~~~~ 151 (372)
..++.++..++|+.++..+.-.+.... ...++|+++|+++.. .|.+.++...+ .+..+|+...+.. ..+.
T Consensus 80 ~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~--PeTg 157 (478)
T PRK15460 80 ENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDL--PETG 157 (478)
T ss_pred ccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCC--CCCC
Confidence 246667778899999887766664321 246889999999743 25555544322 2444455555432 3478
Q ss_pred ceEEEEcCC--------CCceeEeeecCCC--------cccCceeeeEEEeC-HhhHHHhhhcccccchhhhhhccchhh
Q 017417 152 FGELVADPD--------TNELLHYTEKPET--------FVSDLINCGVYVFT-PDIFNAIQGVSSQRKDRENLRRVSSFE 214 (372)
Q Consensus 152 ~~~v~~~~~--------~~~v~~i~ek~~~--------~~~~~~~~Giy~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 214 (372)
||++..+.. ..+|.+|.|||+. ....++|+|+|+|+ ..++++|++..++...... .
T Consensus 158 yGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~-------~ 230 (478)
T PRK15460 158 YGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACE-------K 230 (478)
T ss_pred CCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHH-------H
Confidence 999987642 1379999999962 23468899999999 5677777765554221110 0
Q ss_pred hhhhcccc-c-----cccccccccccccc--CCCCceEEEeecchhhhhcCCcccccc
Q 017417 215 ALQSATRN-L-----TTDFVRLDQDILSP--LAGKKQLYTYETMDFWEQIKTPGMSLK 264 (372)
Q Consensus 215 ~~~~~~~~-~-----~~~~~~~~~d~l~~--~~~~~~v~~~~~~~~w~~i~t~~d~~~ 264 (372)
++...... . ..-|..+...-++. +++..++.+.+.+-.|.|+|++..+.+
T Consensus 231 ~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~ 288 (478)
T PRK15460 231 AMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWE 288 (478)
T ss_pred HHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHH
Confidence 00000000 0 00011111111221 334456888999999999999986554
No 62
>PLN02917 CMP-KDO synthetase
Probab=99.78 E-value=1.2e-17 Score=153.21 Aligned_cols=223 Identities=14% Similarity=0.131 Sum_probs=151.9
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEE
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (372)
+++.+||||+| .++||. +|+|+|++|+|||+|+++.+.. .+|++. +.+++..++... +.++.
T Consensus 46 ~~i~aIIpA~G--~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~-~~e~I~~~~~~~----~v~vi 112 (293)
T PLN02917 46 SRVVGIIPARF--ASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVVAT-DDERIAECCRGF----GADVI 112 (293)
T ss_pred CcEEEEEecCC--CCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEEC-ChHHHHHHHHHc----CCEEE
Confidence 46789999999 999994 5999999999999999998864 444443 345676666532 33343
Q ss_pred EecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEE--EecCCcccccceEEE-
Q 017417 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILV--IKVSAESASQFGELV- 156 (372)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~--~~~~~~~~~~~~~v~- 156 (372)
...+....|+.++ ..+.+.++. +.+.+++++||.++ ...+..+++.+.+. .++++++ .+...+++..||.+.
T Consensus 113 ~~~~~~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~v 189 (293)
T PLN02917 113 MTSESCRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKC 189 (293)
T ss_pred eCCcccCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEE
Confidence 3334445576655 577777753 23689999999998 45699999987654 3344433 333446788899875
Q ss_pred -EcCCCCceeEee-----e-cCC---CcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccc
Q 017417 157 -ADPDTNELLHYT-----E-KPE---TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (372)
Q Consensus 157 -~~~~~~~v~~i~-----e-k~~---~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (372)
.+. +|++.-|. | |.. .....+.++|+|.|+.+.|..+.+..+.+.+++
T Consensus 190 v~~~-~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e--------------------- 247 (293)
T PLN02917 190 VVDN-QGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLE--------------------- 247 (293)
T ss_pred EECC-CCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccch---------------------
Confidence 564 57755332 2 211 122367899999999988888877655544332
Q ss_pred cccccccccccCCCCceEEEeecchhhhhcCCccccccchHHHH
Q 017417 227 FVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (372)
Q Consensus 227 ~~~~~~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~ 270 (372)
++. +|+. .+..+.+|..+..+.....|+||+|+.++++.+.
T Consensus 248 ~yL--tdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~ 288 (293)
T PLN02917 248 EDL--EQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMR 288 (293)
T ss_pred hcc--HHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 221 5655 5566678888877656668999999999888763
No 63
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=5e-16 Score=127.59 Aligned_cols=166 Identities=18% Similarity=0.327 Sum_probs=113.6
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEe
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
|+||||||| .||||.|+|...||+|++|.|+|||+++|+.|.+ |+||+.+..+ -.+|+.. ++++.+.+.
T Consensus 1 ~nAIIlAAG--~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE-~FeYLkd---Ky~vtLvyN 74 (231)
T COG4750 1 MNAIILAAG--LGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKE-QFEYLKD---KYDVTLVYN 74 (231)
T ss_pred CceEEEecc--cccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHH-HHHHHHH---hcCeEEEeC
Confidence 579999999 9999999999999999999999999999999987 5555555444 3456653 456777666
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCc
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~ 163 (372)
+.........+++.+++++.+ .-|+.+|..+..++ ...+.. ..-...+.... ....| .+..+. +++
T Consensus 75 ~kY~~yNn~ySlyla~d~l~n-----tYiidsDnyl~kNi---f~~~~~-~S~Yfav~~~~---~tnEw-~l~~~~-~~k 140 (231)
T COG4750 75 PKYREYNNIYSLYLARDFLNN-----TYIIDSDNYLTKNI---FLTKES-HSKYFAVYRSG---KTNEW-LLIYNS-DGK 140 (231)
T ss_pred chHHhhhhHHHHHHHHHHhcc-----cEEeccchHhhhhh---hhcCcc-cceEEEEEecC---CCcee-EEEEcC-CCc
Confidence 665667889999999999976 67889998763332 111111 11112222221 11222 234443 678
Q ss_pred eeEeeecCCCcccCceeeeEEEeCHhhHHHhhhc
Q 017417 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGV 197 (372)
Q Consensus 164 v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~ 197 (372)
|.++.-.. ...+..+|+.+|+...-+.+...
T Consensus 141 i~~v~Igg---~~~~imsG~sff~~~~~~ki~~l 171 (231)
T COG4750 141 ITRVDIGG---LNGYIMSGISFFDAQFSNKIKKL 171 (231)
T ss_pred EEEEEecC---cccceEeeeeeecchhHHHHHHH
Confidence 88776542 34678899999997666655543
No 64
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.62 E-value=2.5e-14 Score=127.85 Aligned_cols=212 Identities=15% Similarity=0.130 Sum_probs=136.4
Q ss_pred eEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEec
Q 017417 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (372)
Q Consensus 10 ~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~ 84 (372)
.+||+|+| .|+|| | +|+|++++|+|||+|+++++.. |+|++. .+.+.+++.. ++.++....
T Consensus 1 ~~iIpA~g--~s~R~-~-----~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~----~g~~~v~~~ 66 (238)
T TIGR00466 1 MVIIPARL--ASSRL-P-----GKPLEDIFGKPMIVHVAENANESGADRCIVATD--DESVAQTCQK----FGIEVCMTS 66 (238)
T ss_pred CEEEecCC--CCCCC-C-----CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH----cCCEEEEeC
Confidence 37999999 99999 3 7999999999999999998754 666664 2345555543 233333322
Q ss_pred CCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcc----cccceEEEEc
Q 017417 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAES----ASQFGELVAD 158 (372)
Q Consensus 85 ~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~----~~~~~~v~~~ 158 (372)
+....| ...+..+...+...+.+.++++.||.++ ...+.++++.+.+.+.+++.++.+..... +. ...+..+
T Consensus 67 ~~~~~G-t~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~-~vk~v~~ 144 (238)
T TIGR00466 67 KHHNSG-TERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPN-AVKVVLD 144 (238)
T ss_pred CCCCCh-hHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCC-ceEEEeC
Confidence 333333 3444444444421123579999999997 45689999887655566777777753211 11 2223335
Q ss_pred CCCCceeEeeecCC-----------Ccc--cCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhccccccc
Q 017417 159 PDTNELLHYTEKPE-----------TFV--SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225 (372)
Q Consensus 159 ~~~~~v~~i~ek~~-----------~~~--~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (372)
. +|+.+-|.+.+. .+. ..+...|+|.|++++|+.+....+...+..+
T Consensus 145 ~-~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e------------------- 204 (238)
T TIGR00466 145 S-QGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIE------------------- 204 (238)
T ss_pred C-CCeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccc-------------------
Confidence 3 566554444311 111 1466899999999999998876544333221
Q ss_pred ccccccccccccCCCCceEEEeecchh-hhhcCCcccc
Q 017417 226 DFVRLDQDILSPLAGKKQLYTYETMDF-WEQIKTPGMS 262 (372)
Q Consensus 226 ~~~~~~~d~l~~~~~~~~v~~~~~~~~-w~~i~t~~d~ 262 (372)
. -|.|..+..+.+|.+...++. -..++||+|+
T Consensus 205 ---~--leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 205 ---K--LEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ---h--hHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1 245667778889998887765 4589999986
No 65
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.55 E-value=1.4e-14 Score=121.67 Aligned_cols=117 Identities=25% Similarity=0.377 Sum_probs=89.2
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEecC
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 85 (372)
+|||||| .|+||+. ||+|+|++|+|||+|+++.+.. |+|+++. +++..++.. .+.++... .
T Consensus 1 ~vILa~G--~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~----~~~~~v~~-~ 66 (160)
T PF12804_consen 1 AVILAAG--KSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLER----YGIKVVVD-P 66 (160)
T ss_dssp EEEEESS--SCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT----TTSEEEE--S
T ss_pred CEEECCc--CcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhc----cCceEEEe-c
Confidence 6999999 9999975 9999999999999999999876 7777765 345555533 23333222 2
Q ss_pred CcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEe
Q 017417 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIK 143 (372)
Q Consensus 86 ~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~ 143 (372)
....|.+++++.++..+... ++|++++||+++ ...+..+++.+.+.+.+++++.+.
T Consensus 67 ~~~~G~~~sl~~a~~~~~~~--~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~~ 124 (160)
T PF12804_consen 67 EPGQGPLASLLAALSQLPSS--EPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVFR 124 (160)
T ss_dssp TSSCSHHHHHHHHHHTSTTS--SEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEET
T ss_pred cccCChHHHHHHHHHhcccC--CCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEEC
Confidence 23489999999999998422 689999999987 456899999988777766665543
No 66
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.54 E-value=6.6e-14 Score=124.56 Aligned_cols=212 Identities=17% Similarity=0.196 Sum_probs=130.4
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccch-HHHHHHHhhccCCCCee
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIP 79 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~ 79 (372)
+++.+|||||| .|+||+. ..||+|+|++|+|||+|+++.+.. |+|++.... +.+...... .. ..
T Consensus 2 ~~~~~iILAaG--~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~ 72 (227)
T PRK00155 2 MMVYAIIPAAG--KGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PK 72 (227)
T ss_pred CceEEEEEcCc--cccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-Cc
Confidence 35789999999 9999964 569999999999999999998843 666665443 333222211 11 12
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEE
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~ 157 (372)
+.++... .+..+++..+++.+.+. +.+++++||.++ ...++++++.+.+.+ .++++.+.. + .+. .+
T Consensus 73 ~~~~~~~--~~~~~sv~~~l~~~~~~--d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~--~--~~~--~v 140 (227)
T PRK00155 73 VTVVAGG--AERQDSVLNGLQALPDD--DWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVK--D--TIK--RS 140 (227)
T ss_pred eEEeCCc--chHHHHHHHHHHhCCCC--CEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEecc--c--cEE--EE
Confidence 3333322 35789999999988433 579999999997 456899999876643 444444432 1 122 22
Q ss_pred cCCCCceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhccccccccccccccccccc
Q 017417 158 DPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (372)
Q Consensus 158 ~~~~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ 237 (372)
+. +|.+..+.+.. .-...-+.|.|+.+.+..+.+...+ ..++. .|....
T Consensus 141 ~~-~g~~~~~~~r~----~~~~~~~p~~f~~~~l~~~~~~~~~------------------------~~~~~--~d~~~~ 189 (227)
T PRK00155 141 DD-GGGIVDTPDRS----GLWAAQTPQGFRIELLREALARALA------------------------EGKTI--TDDASA 189 (227)
T ss_pred cC-CCceeecCChH----HheeeeCCccchHHHHHHHHHHHHh------------------------cCCCc--CcHHHH
Confidence 32 45565554321 1112224788887777666543211 01110 121111
Q ss_pred CC-CCceEEEeecchhhhhcCCccccccchHHHH
Q 017417 238 LA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (372)
Q Consensus 238 ~~-~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~ 270 (372)
+. .+.++..+..+..+.+|+||+|+..|...+.
T Consensus 190 ~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 190 VERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred HHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 11 2346777776777889999999988876653
No 67
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.52 E-value=5.2e-14 Score=120.45 Aligned_cols=120 Identities=21% Similarity=0.275 Sum_probs=90.2
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEe
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
|.+|||||| +|+||++ .||+|+|++|+|||+|+++++.. |+|+++.+.+....++.... . .+.
T Consensus 1 m~aIILAgG--~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----~--~~~ 68 (183)
T TIGR00454 1 MDALIMAGG--KGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----K--DYK 68 (183)
T ss_pred CeEEEECCc--cCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC----c--EEE
Confidence 689999999 9999975 69999999999999999999864 67777666666777776421 1 122
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEe
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIK 143 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~ 143 (372)
.....|...++..+++.+... ++++++.||+++ ...+..+++.+...+.....+..+
T Consensus 69 -~~~g~G~~~~l~~al~~~~~~--~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 69 -NASGKGYIEDLNECIGELYFS--EPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred -ecCCCCHHHHHHHHhhcccCC--CCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 244578888999888865433 569999999997 556899999887665555444443
No 68
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.52 E-value=1.5e-13 Score=130.05 Aligned_cols=202 Identities=14% Similarity=0.166 Sum_probs=128.3
Q ss_pred CCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCee
Q 017417 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIP 79 (372)
Q Consensus 6 ~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~ 79 (372)
++++.+|||||| .|+||+. ..||+|+|++|+|||+|+++.+.. |+|+.+.........+. ..+..
T Consensus 3 mm~v~aIILAAG--~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~---~~~~~- 73 (378)
T PRK09382 3 MSDISLVIVAAG--RSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKAL---PEIKF- 73 (378)
T ss_pred CCcceEEEECCC--CCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhc---ccCCe-
Confidence 356899999999 9999964 679999999999999999999864 66665544333322221 11111
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEE
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~ 157 (372)
+.++.. ..+..+|++++++.++. +.+++++||.++ ...+..+++...+ .++++...++. +...|+...+
T Consensus 74 v~~v~g--G~~r~~SV~~gL~~l~~---d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~~pv~--Dtik~~~~tl 144 (378)
T PRK09382 74 VTLVTG--GATRQESVRNALEALDS---EYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPALPVA--DTLKRANETV 144 (378)
T ss_pred EEEeCC--CchHHHHHHHHHHhcCC---CeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEEEEec--cCcEEeeeEc
Confidence 333322 24578999999998854 579999999987 3457888877654 35677777763 3455554444
Q ss_pred cCCCCceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhccccccccccccccccccc
Q 017417 158 DPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (372)
Q Consensus 158 ~~~~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ 237 (372)
+. ..+..+ ++|....... +++.... ..++ +|..+.
T Consensus 145 dR--~~l~~~-QTPQ~f~~~~-----------l~~a~~~---------------------------~~~~----TDd~sl 179 (378)
T PRK09382 145 DR--EGLKLI-QTPQLSRTKT-----------LKAAADG---------------------------RGDF----TDDSSA 179 (378)
T ss_pred Cc--ccEEEE-ECCCCCCHHH-----------HHHHHhC---------------------------CCCc----ccHHHH
Confidence 42 344333 5554322111 1111100 0011 233333
Q ss_pred CC-CCceEEEeecchhhhhcCCccccccchHHHH
Q 017417 238 LA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (372)
Q Consensus 238 ~~-~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~ 270 (372)
+. ...+|+.++-++.|..|.+|+|+..|+.++.
T Consensus 180 ~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~ 213 (378)
T PRK09382 180 AEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLS 213 (378)
T ss_pred HHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhc
Confidence 22 3468899998999999999999999877653
No 69
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.51 E-value=2.4e-13 Score=120.47 Aligned_cols=168 Identities=19% Similarity=0.224 Sum_probs=109.0
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCeeEE
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (372)
++.+|||||| .|+||. +|+|+|++|+|||+|+++.+.. |+|++. .+.+..++... +..+.
T Consensus 1 ~~~~iIlA~G--~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~----~~~~~ 66 (223)
T cd02513 1 KILAIIPARG--GSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY----GAEVP 66 (223)
T ss_pred CeEEEEecCC--CCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh----CCCce
Confidence 4679999999 999993 5999999999999999999864 555553 33455554432 22222
Q ss_pred EecC----CcccChHHHHHHHHHHhhcc--CCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccce
Q 017417 82 YLRE----DKPHGSAGALYNFRDLIMED--NPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (372)
Q Consensus 82 ~~~~----~~~~g~~~al~~~~~~l~~~--~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 153 (372)
+... ....|+.+++..+++.+... ..+.++++.||.++ ..++.++++.+.+.+.+.++.+.+.. ...+.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~---~~~~~ 143 (223)
T cd02513 67 FLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFH---RFPWR 143 (223)
T ss_pred eeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecC---cCcHH
Confidence 2221 22357889999999887541 12579999999987 45799999998877777777776643 22232
Q ss_pred EEEEcCCCCceeEeeec-----CCCcccCceeeeEEEeCHhhHH
Q 017417 154 ELVADPDTNELLHYTEK-----PETFVSDLINCGVYVFTPDIFN 192 (372)
Q Consensus 154 ~v~~~~~~~~v~~i~ek-----~~~~~~~~~~~Giy~~~~~~~~ 192 (372)
....+.++..+..+.++ .+.+.....++|+|+++++.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~ 187 (223)
T cd02513 144 ALGLDDNGLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALL 187 (223)
T ss_pred heeeccCCceeccCcccccCCcCCChhHeeECCEEEEEEHHHHH
Confidence 22222111112222111 1233455678899999988764
No 70
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.51 E-value=1.2e-13 Score=119.02 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=79.9
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEecC
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 85 (372)
+|||||| .|+||++ ||+|+|++|+|||+|+++.+.. |+|++......+...+. ..+++. ++..
T Consensus 2 ~iIla~G--~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~---~~~~v~--~v~~ 69 (188)
T TIGR03310 2 AIILAAG--LSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLA---NHSNIT--LVHN 69 (188)
T ss_pred eEEECCC--CcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhc---cCCCeE--EEEC
Confidence 7999999 9999975 9999999999999999988764 66666555444333332 122333 3332
Q ss_pred -CcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceE
Q 017417 86 -DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGT 138 (372)
Q Consensus 86 -~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~ 138 (372)
....|...+++.+++... +.+.+++++||+++ ...++.+++.+.+.+.+++
T Consensus 70 ~~~~~g~~~si~~~l~~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 123 (188)
T TIGR03310 70 PQYAEGQSSSIKLGLELPV--QSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIV 123 (188)
T ss_pred cChhcCHHHHHHHHhcCCC--CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEE
Confidence 223688999999887211 23679999999986 3468888887765544443
No 71
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.48 E-value=2.8e-13 Score=119.68 Aligned_cols=166 Identities=18% Similarity=0.284 Sum_probs=108.2
Q ss_pred eEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCeeEEEe
Q 017417 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 10 ~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
.+|||||| .|+||++ ..||+|+|++|+|||+|+++.+.. |+|++..........+.... ....+.++
T Consensus 2 ~~vILAaG--~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~--~~~~~~~~ 74 (218)
T cd02516 2 AAIILAAG--SGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYG--LSKVVKIV 74 (218)
T ss_pred EEEEECCc--ccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhcc--cCCCeEEE
Confidence 58999999 9999986 479999999999999999998764 66666544333333221111 11233444
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCC
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~ 161 (372)
.+. .+..++++.+++.+...+.+.++++.||+++ ...++.+++.+.+.+ ..+...+.. .+....+. +
T Consensus 75 ~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~------~~~~~~~~-~ 143 (218)
T cd02516 75 EGG--ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPVT------DTIKRVDD-D 143 (218)
T ss_pred CCc--hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEecc------ccEEEecC-C
Confidence 332 3568899999998842223689999999997 456899999886543 333333321 11122343 5
Q ss_pred CceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhc
Q 017417 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGV 197 (372)
Q Consensus 162 ~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~ 197 (372)
|.+..+.+.. .-..+.++ ++|+...|..+...
T Consensus 144 g~~~~~~~r~---~~~~~~~P-~~f~~~~~~~~~~~ 175 (218)
T cd02516 144 GVVVETLDRE---KLWAAQTP-QAFRLDLLLKAHRQ 175 (218)
T ss_pred CceeecCChH---HhhhhcCC-CcccHHHHHHHHHH
Confidence 7787776642 23445566 88898888776543
No 72
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.48 E-value=2.4e-13 Score=120.08 Aligned_cols=205 Identities=18% Similarity=0.202 Sum_probs=127.5
Q ss_pred eEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccch-HHHHHHHhhccCCCCeeEEE
Q 017417 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPVRY 82 (372)
Q Consensus 10 ~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~i~~ 82 (372)
.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.. ++|++..+. +.+...+.. . ..+.+
T Consensus 1 ~aiIlAaG--~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~--~~~~~ 70 (217)
T TIGR00453 1 SAVIPAAG--RGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---R--AVPKI 70 (217)
T ss_pred CEEEEcCc--ccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---C--CcEEE
Confidence 37999999 9999985 579999999999999999998764 666655432 334333322 1 11233
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCC
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~ 160 (372)
+... .+..++++.++..++ +.+.+++++||.++ ...+..+++.+.+. ++++++.+. ..+...+++
T Consensus 71 ~~~~--~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~------~~~v~~~~~- 137 (217)
T TIGR00453 71 VAGG--DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV------ADTLKRVEA- 137 (217)
T ss_pred eCCC--chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec------cceEEEEcC-
Confidence 3322 246688999998872 23689999999987 45689998887653 344444443 123344453
Q ss_pred CCceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccC-C
Q 017417 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL-A 239 (372)
Q Consensus 161 ~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~-~ 239 (372)
+|.+..+.++.. -..+.+ .|.|+...+..+.+.... ..++. .|....+ .
T Consensus 138 ~g~~~~~~~r~~---~~~~~~-p~~f~~~~l~~~~~~~~~------------------------~~~~~--~d~~~~~~~ 187 (217)
T TIGR00453 138 DGFIVETVDREG---LWAAQT-PQAFRTELLKKALARAKE------------------------EGFEI--TDDASAVEK 187 (217)
T ss_pred CCceeecCChHH---eEEEeC-CCcccHHHHHHHHHHHHh------------------------cCCCC--CcHHHHHHH
Confidence 466766666321 122333 688998777665432111 01110 2222211 1
Q ss_pred CCceEEEeecchhhhhcCCccccccchH
Q 017417 240 GKKQLYTYETMDFWEQIKTPGMSLKCSG 267 (372)
Q Consensus 240 ~~~~v~~~~~~~~w~~i~t~~d~~~a~~ 267 (372)
...+|..+..+..+.+|++|+|+..+..
T Consensus 188 ~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 188 LGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred cCCCeEEEecCccccccCCHHHHHHHHH
Confidence 2456777777767779999999877654
No 73
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.47 E-value=2e-13 Score=120.71 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=74.9
Q ss_pred ccccccCCCCceEEEeecchhhhhcCCccccccchHHHHhhccccC-------Ccc--ccCC-CCCCCcEEcCCcEECCC
Q 017417 232 QDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTS-------PNL--LASG-DGTKNATIIGDVYVHPS 301 (372)
Q Consensus 232 ~d~l~~~~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~~~~~~~~~-------~~~--~~~~-~~~~~~~~~~~~~i~~~ 301 (372)
+|.++.+...+ ++..+|||.|+ ++|+++++.++..+.... +.. .... ...+.+.+.+++.|+++
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~ 104 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDN 104 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCC
Confidence 67888877655 78889999999 999999998886643100 000 0000 01234445556666666
Q ss_pred CEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEEc---------eEECCCCEECCCcEEc
Q 017417 302 AKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTN---------AIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 302 ~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~ 363 (372)
+.|++++.|.++++||++|.|++++.|. +|+|+++|.|+.+|+|.+ +.|++++.||.++.|.
T Consensus 105 ~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~ 176 (231)
T TIGR03532 105 AVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVIL 176 (231)
T ss_pred CEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEc
Confidence 6666666665556666666666666554 556666666655555542 4445545554444443
No 74
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.46 E-value=4.3e-13 Score=119.55 Aligned_cols=212 Identities=12% Similarity=0.161 Sum_probs=126.9
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccch-HHHHHHHhhccCCCCeeEE
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPVR 81 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~i~ 81 (372)
+.+|||||| .|+||+. +.||+|++++|+|||+|+++++.. |+|++.... ..+.+++..+... ...+.
T Consensus 3 ~~~iIlAaG--~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~-~~~~~ 76 (230)
T PRK13385 3 YELIFLAAG--QGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA-DQRVE 76 (230)
T ss_pred eEEEEECCe--eccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC-CCceE
Confidence 689999999 9999975 579999999999999999998753 666655432 3333444432111 01233
Q ss_pred EecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcC
Q 017417 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (372)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~ 159 (372)
++... .+..++++.+++.++.. +.+++++||.++ ...+.++++.+.+.+ ..+...+.. ..+....
T Consensus 77 ~v~~g--~~r~~sv~~gl~~~~~~--d~vli~~~d~P~i~~~~i~~li~~~~~~~--~~~~~~~~~-------dti~~~~ 143 (230)
T PRK13385 77 VVKGG--TERQESVAAGLDRIGNE--DVILVHDGARPFLTQDIIDRLLEGVAKYG--AAICAVEVK-------DTVKRVK 143 (230)
T ss_pred EcCCC--chHHHHHHHHHHhccCC--CeEEEccCCCCCCCHHHHHHHHHHHhhCC--cEEEEEecc-------ceEEEEc
Confidence 43322 34569999999887543 568999999998 445899998876654 333333331 1122221
Q ss_pred CCCceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccCC
Q 017417 160 DTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239 (372)
Q Consensus 160 ~~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~ 239 (372)
++.+....++. .-+..-+.|.|+.+.+....+.... . .++ +..+..-...
T Consensus 144 -~~~~~~~i~r~----~~~~~qtpq~f~~~~l~~~~~~~~~-----------------------~-~~~-~td~~~~~~~ 193 (230)
T PRK13385 144 -DKQVIETVDRN----ELWQGQTPQAFELKILQKAHRLASE-----------------------Q-QFL-GTDEASLVER 193 (230)
T ss_pred -CCeeEeccCHH----HHhhhcCCceeeHHHHHHHHHHHHh-----------------------c-CCC-cCcHHHHHHH
Confidence 24343322211 1222335677886655544332100 0 000 0011111222
Q ss_pred CCceEEEeecchhhhhcCCccccccchHHH
Q 017417 240 GKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (372)
Q Consensus 240 ~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (372)
...+|..++-+.....|.+|+|+..|..++
T Consensus 194 ~g~~v~~v~~~~~n~kItt~eDl~~a~~~l 223 (230)
T PRK13385 194 SPHPVKLVQGSYYNIKLTTPEDMPLAKAIL 223 (230)
T ss_pred cCCCEEEEECCcccCcCCCHHHHHHHHHHH
Confidence 346788888888888999999999887654
No 75
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.46 E-value=5.1e-13 Score=114.81 Aligned_cols=114 Identities=23% Similarity=0.367 Sum_probs=83.1
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEe
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
+.+|||||| .|+||++ ||+|+|++|+|||+|+++.+.. |+|++......+..++.. ++..+ +.
T Consensus 1 ~~~vIlAgG--~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~-~~ 68 (186)
T cd04182 1 IAAIILAAG--RSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG----LPVVV-VI 68 (186)
T ss_pred CeEEEECCC--CCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC----CCeEE-Ee
Confidence 468999999 9999987 9999999999999999998765 677766554444443322 23322 22
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCC
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGG 135 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~ 135 (372)
.+....|...+++.+++.+.. ..+++++++||+++ ...+..+++.+.+.+.
T Consensus 69 ~~~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 69 NPDWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred CCChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 223346899999999998863 23689999999987 4458888887664443
No 76
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.42 E-value=1.4e-12 Score=112.67 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=78.0
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhc-cCCCCeeEEE
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSI-SNELRIPVRY 82 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~-~~~~~~~i~~ 82 (372)
+.+|||||| .|+||+. +|.|++++|+|||+|+++.+.. ++|+.+...+.+. .+... ....++.+..
T Consensus 1 ~~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~~~~~~~~~~ 72 (190)
T TIGR03202 1 IVAIYLAAG--QSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLLADERIMLVC 72 (190)
T ss_pred CeEEEEcCC--ccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhhcCCCeEEEE
Confidence 358999999 9999987 8999999999999999976433 6666554332211 11110 1112233332
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhc
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY 133 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~ 133 (372)
. ++...|.+.+++.++..+.....+.++++.||+++ ...+..+++...+.
T Consensus 73 ~-~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~ 124 (190)
T TIGR03202 73 C-RDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRR 124 (190)
T ss_pred C-CChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhC
Confidence 2 23345889999999998743334689999999998 34477887765443
No 77
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.37 E-value=1e-11 Score=109.78 Aligned_cols=199 Identities=15% Similarity=0.103 Sum_probs=130.7
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCeeEEEec
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~ 84 (372)
|||||+| .++|| | .|.++|++|+|||.|+++.+.. |+|.+. .+++...... ++..+.+..
T Consensus 2 aiIpArG--~Skr~-~-----~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~----~g~~v~~~r 67 (222)
T TIGR03584 2 AIIPARG--GSKRI-P-----RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS----YGASVPFLR 67 (222)
T ss_pred EEEccCC--CCCCC-C-----CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH----cCCEeEEeC
Confidence 7999999 89999 4 6999999999999999999866 555443 3445555543 234444432
Q ss_pred C----CcccChHHHHHHHHHHhhc-cCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEE
Q 017417 85 E----DKPHGSAGALYNFRDLIME-DNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (372)
Q Consensus 85 ~----~~~~g~~~al~~~~~~l~~-~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~ 157 (372)
. ....+..+++..+++.+.. .+.+.++++.||.++ ..++..+++.+.+.+++..+.+.+.. .+. +.....
T Consensus 68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~--~~~-~~~~~~ 144 (222)
T TIGR03584 68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA--FPI-QRAFKL 144 (222)
T ss_pred hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC--CCh-HHheEE
Confidence 1 2346788999999988743 223679999999998 45799999998876677777776642 112 222233
Q ss_pred cCCCCceeEeee------cCCCcccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhccccccccccccc
Q 017417 158 DPDTNELLHYTE------KPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLD 231 (372)
Q Consensus 158 ~~~~~~v~~i~e------k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (372)
++ +|++..+.. .++.+.....+.++|+++++.|..-.. +
T Consensus 145 ~~-~g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~~------------------------------~---- 189 (222)
T TIGR03584 145 KE-NGGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESGP------------------------------I---- 189 (222)
T ss_pred CC-CCcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcCC------------------------------c----
Confidence 32 455544432 122223345688999999887742110 0
Q ss_pred ccccccCCCCceEEEeecch-hhhhcCCccccccchHHH
Q 017417 232 QDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGLY 269 (372)
Q Consensus 232 ~d~l~~~~~~~~v~~~~~~~-~w~~i~t~~d~~~a~~~~ 269 (372)
+ ..+++.|..+. .-.||++++|+..|..++
T Consensus 190 ---~-----~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 190 ---F-----SPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred ---c-----CCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 0 23455665553 578999999988875543
No 78
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.35 E-value=6e-12 Score=103.08 Aligned_cols=106 Identities=23% Similarity=0.372 Sum_probs=83.9
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce----EEEEcccchHHHHHHHhhccCCCCeeEEEec
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~ 84 (372)
|.+|||||| +|+||+- .=|||++++|||||+|+++.+.+ |++....+-...+.|+.+. + +.++.
T Consensus 1 m~~iiMAGG--rGtRmg~----~EKPlleV~GkpLI~~v~~al~~~~d~i~v~isp~tp~t~~~~~~~----g--v~vi~ 68 (177)
T COG2266 1 MMAIIMAGG--RGTRMGR----PEKPLLEVCGKPLIDRVLEALRKIVDEIIVAISPHTPKTKEYLESV----G--VKVIE 68 (177)
T ss_pred CceEEecCC--cccccCC----CcCcchhhCCccHHHHHHHHHHhhcCcEEEEeCCCCHhHHHHHHhc----C--ceEEE
Confidence 579999999 9999983 26999999999999999999887 7777776667788888763 2 34444
Q ss_pred CCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHH
Q 017417 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHR 131 (372)
Q Consensus 85 ~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~ 131 (372)
.. ..|-..-+..+++.+.. ++|++++|+++ +..+..+++.+.
T Consensus 69 tp-G~GYv~Dl~~al~~l~~----P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 69 TP-GEGYVEDLRFALESLGT----PILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred cC-CCChHHHHHHHHHhcCC----ceEEEecccccCCHHHHHHHHHHHh
Confidence 33 35778899999999875 59999999998 345777777665
No 79
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.34 E-value=7e-12 Score=107.94 Aligned_cols=111 Identities=17% Similarity=0.271 Sum_probs=78.7
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce----EEEEcccchHHHHHHHhhccCCCCeeEEEec
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~ 84 (372)
+.+|||||| .|+||+. .||+|+|++|+|||+|+++.+.. |+|++...... +... .++..+....
T Consensus 1 ~~~iILAgG--~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~~~~~ivv~~~~~~~~---~~~~---~~~~~~i~~~ 68 (186)
T TIGR02665 1 ISGVILAGG--RARRMGG----RDKGLVELGGKPLIEHVLARLRPQVSDLAISANRNPER---YAQA---GFGLPVVPDA 68 (186)
T ss_pred CeEEEEcCC--ccccCCC----CCCceeEECCEEHHHHHHHHHHhhCCEEEEEcCCCHHH---Hhhc---cCCCcEEecC
Confidence 468999999 9999973 59999999999999999998865 66666543321 2111 1222332211
Q ss_pred CCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcC
Q 017417 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYG 134 (372)
Q Consensus 85 ~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~ 134 (372)
.....|...+++.++..++. +.+++++||+++ ...++.+++.+.+.+
T Consensus 69 ~~~~~g~~~si~~al~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 117 (186)
T TIGR02665 69 LADFPGPLAGILAGLRWAGT---DWVLTVPCDTPFLPEDLVARLAAALEASD 117 (186)
T ss_pred CCCCCCCHHHHHHHHHhcCC---CeEEEEecCCCcCCHHHHHHHHHHhhccC
Confidence 23457999999999998853 579999999987 334778877765433
No 80
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.34 E-value=4.3e-12 Score=108.80 Aligned_cols=102 Identities=23% Similarity=0.419 Sum_probs=77.2
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce----EEEEcccchHHHHHHHhhccCCCCeeEEEec
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~ 84 (372)
+.+|||||| .|+||++ ||+|+|++|+|||+|+++.+.. |+|++...... +. ..+. .++.
T Consensus 1 ~~~iILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~~~~iivv~~~~~~~---~~-----~~~~--~~v~ 63 (181)
T cd02503 1 ITGVILAGG--KSRRMGG-----DKALLELGGKPLLEHVLERLKPLVDEVVISANRDQER---YA-----LLGV--PVIP 63 (181)
T ss_pred CcEEEECCC--ccccCCC-----CceeeEECCEEHHHHHHHHHHhhcCEEEEECCCChHH---Hh-----hcCC--cEee
Confidence 468999999 9999986 9999999999999999999865 77777655432 11 1122 2332
Q ss_pred C-CcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHH
Q 017417 85 E-DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAH 130 (372)
Q Consensus 85 ~-~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~ 130 (372)
+ ....|...++..++..++. +.++++.||+++ ...+..+++.+
T Consensus 64 ~~~~~~G~~~si~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 64 DEPPGKGPLAGILAALRAAPA---DWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCCCCHHHHHHHHHhcCC---CeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 2 2457899999999998753 579999999987 34577777765
No 81
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.31 E-value=7.7e-12 Score=108.91 Aligned_cols=109 Identities=24% Similarity=0.401 Sum_probs=80.4
Q ss_pred CCCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce----EEEEcccchHHHHHHHhhccCCCCeeE
Q 017417 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPV 80 (372)
Q Consensus 5 ~~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i 80 (372)
|.+++.+|||||| .|+||+. +|+|++++|+|||+|+++.+.. |+|+++.. +....... ..+
T Consensus 4 ~~~~~~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~~~~ivvv~~~~-~~~~~~~~-------~~~ 68 (200)
T PRK02726 4 VKNNLVALILAGG--KSSRMGQ-----DKALLPWQGVPLLQRVARIAAACADEVYIITPWP-ERYQSLLP-------PGC 68 (200)
T ss_pred cCCCceEEEEcCC--CcccCCC-----CceeeEECCEeHHHHHHHHHHhhCCEEEEECCCH-HHHHhhcc-------CCC
Confidence 4567999999999 9999975 8999999999999999999875 66666532 22221111 123
Q ss_pred EEecC-CcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHH
Q 017417 81 RYLRE-DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHR 131 (372)
Q Consensus 81 ~~~~~-~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~ 131 (372)
.++.+ ....|...+++.++..++. ++++|++||+++ ...+..+++.+.
T Consensus 69 ~~i~~~~~~~G~~~si~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 69 HWLREPPPSQGPLVAFAQGLPQIKT---EWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred eEecCCCCCCChHHHHHHHHHhCCC---CcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 34432 3337899999999998864 579999999998 345778887654
No 82
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.30 E-value=1.3e-11 Score=107.13 Aligned_cols=103 Identities=21% Similarity=0.379 Sum_probs=72.4
Q ss_pred CCCCCCCCeeEEEEeCCCCCCCccccCcccCCCCCcccCC-cchhhhhHhhcce----EEEEcccchHHHHHHHhhccCC
Q 017417 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGG-QPMVHHPISACKR----IYLVGFYEEREFALYVSSISNE 75 (372)
Q Consensus 1 ~~~~~~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g-~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~ 75 (372)
|.-.|..++.+|||||| .++||+. +|+|+|++| +|+|+|+++.+.. |+|++.. . .+ .
T Consensus 1 ~~~~~~~~i~~vILAgG--~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~~~~vvvv~~~-~-~~----~----- 62 (196)
T PRK00560 1 MKNPMIDNIPCVILAGG--KSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKLFKKVYISTKD-K-KF----E----- 62 (196)
T ss_pred CCCccccCceEEEECCc--ccccCCC-----CceEEEeCCCCcHHHHHHHHHHHhCCEEEEEECc-h-hc----c-----
Confidence 44457788999999999 9999976 999999999 9999999999875 6666553 1 11 1
Q ss_pred CCeeEEEec--CCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee-cCC-hHHH
Q 017417 76 LRIPVRYLR--EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEM 126 (372)
Q Consensus 76 ~~~~i~~~~--~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~-~~~-l~~~ 126 (372)
... .++. .....|+..++..++...+. +.++|+.||+++ ..+ ++++
T Consensus 63 ~~~--~~v~d~~~~~~gpl~gi~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 63 FNA--PFLLEKESDLFSPLFGIINAFLTLQT---PEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred cCC--cEEecCCCCCCCcHHHHHHHHHhcCC---CeEEEEecCcCcCCHHHHHHH
Confidence 011 2222 22335777777766654433 579999999997 333 5555
No 83
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.29 E-value=1.8e-11 Score=106.01 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=77.1
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce----EEEEcccchHHHHHHHhhccCCCCeeEEE
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
+++.+|||||| .|+||+. .||+|+|++|+|||+|+++.+.. |+|++......+ .. .++.+..
T Consensus 2 ~~~~~vILA~G--~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~~~~~~i~vv~~~~~~~~----~~----~~~~~v~ 67 (193)
T PRK00317 2 PPITGVILAGG--RSRRMGG----VDKGLQELNGKPLIQHVIERLAPQVDEIVINANRNLARY----AA----FGLPVIP 67 (193)
T ss_pred CCceEEEEcCC--CcccCCC----CCCceeEECCEEHHHHHHHHHhhhCCEEEEECCCChHHH----Hh----cCCcEEe
Confidence 46899999999 9999952 59999999999999999999865 666665433221 11 1222211
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHh
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRN 132 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~ 132 (372)
.......|...+++.+++..+. +.+++++||+++ ...+..+++.+.+
T Consensus 68 ~~~~~~~g~~~~i~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 68 DSLADFPGPLAGILAGLKQART---EWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred CCCCCCCCCHHHHHHHHHhcCC---CeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 1112236888999998886543 579999999987 3457888876543
No 84
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.29 E-value=2.2e-11 Score=89.61 Aligned_cols=68 Identities=50% Similarity=0.931 Sum_probs=59.4
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 298 i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
+++++.|++++.++++++|+++|+|+++++|.+|+|+++++|++++.|.++++++++.|++++.+.++
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~ 69 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENV 69 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecC
Confidence 56778888888887788899999999999999999999999999999999999999999998888664
No 85
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=8.3e-11 Score=99.93 Aligned_cols=223 Identities=15% Similarity=0.188 Sum_probs=156.8
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEE
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
+..+||+|-= .+|||. -|||-.|+|+|||.|+.++..+ ++|-+. .+.+.+++.+. +.++.+
T Consensus 3 ~~~viIPAR~--~STRLp------gKPLadI~GkpmI~rV~e~a~~s~~~rvvVATD--de~I~~av~~~----G~~avm 68 (247)
T COG1212 3 KFVVIIPARL--ASTRLP------GKPLADIGGKPMIVRVAERALKSGADRVVVATD--DERIAEAVQAF----GGEAVM 68 (247)
T ss_pred ceEEEEecch--hcccCC------CCchhhhCCchHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHh----CCEEEe
Confidence 5678999986 788885 4999999999999999998775 555553 45677777654 455666
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCccc--cc-ceEEEE
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESA--SQ-FGELVA 157 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~--~~-~~~v~~ 157 (372)
...+.+.|+ +-+..+...+...+.+.++=+.||.++ +..+.++++...+.+++++-++.+...++. ++ --.+..
T Consensus 69 T~~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~ 147 (247)
T COG1212 69 TSKDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVL 147 (247)
T ss_pred cCCCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEE
Confidence 666666676 667777777654444678888999998 345888888877777777666666543221 11 123446
Q ss_pred cCCCCceeEeeecCCCc-------ccCceeeeEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccc
Q 017417 158 DPDTNELLHYTEKPETF-------VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRL 230 (372)
Q Consensus 158 ~~~~~~v~~i~ek~~~~-------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (372)
|. .|+.+-|...+-.. ...+.-.|+|.+++.+++.+....+...++-+ +
T Consensus 148 d~-~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E----------------------~- 203 (247)
T COG1212 148 DK-EGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIE----------------------S- 203 (247)
T ss_pred cC-CCcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHH----------------------H-
Confidence 65 58888888764211 24566789999999999998877655333221 0
Q ss_pred cccccccCCCCceEEEeecchhh-hhcCCccccccchHHHH
Q 017417 231 DQDILSPLAGKKQLYTYETMDFW-EQIKTPGMSLKCSGLYL 270 (372)
Q Consensus 231 ~~d~l~~~~~~~~v~~~~~~~~w-~~i~t~~d~~~a~~~~~ 270 (372)
-+-|..|..+.+|.+...+..- ..++||+|+-++...+.
T Consensus 204 -LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 204 -LEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred -HHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 1335556778899999988766 89999999999876654
No 86
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.27 E-value=1.2e-10 Score=102.05 Aligned_cols=209 Identities=19% Similarity=0.201 Sum_probs=121.1
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccc-hHHHHHHHhhccCCCCeeEE
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYE-EREFALYVSSISNELRIPVR 81 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~-~~~i~~~~~~~~~~~~~~i~ 81 (372)
+.+||+||| .|+||+. ..||++++++|+|+|.|+++.|.. |+|+.+.. .+.+.+.+.. ..+.
T Consensus 1 V~aIilAaG--~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~------~~v~ 69 (221)
T PF01128_consen 1 VAAIILAAG--SGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK------KKVK 69 (221)
T ss_dssp EEEEEEESS---STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH------TTEE
T ss_pred CEEEEeCCc--cchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC------CCEE
Confidence 468999999 9999987 789999999999999999999876 66665543 3444444443 2244
Q ss_pred EecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcC
Q 017417 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (372)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~ 159 (372)
++.. .....+|+++++..+.... +.++|++|=-++ ...+.++++..++. ..+.+...+.. .....++.
T Consensus 70 iv~G--G~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~~------DTik~v~~ 139 (221)
T PF01128_consen 70 IVEG--GATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPVT------DTIKRVDD 139 (221)
T ss_dssp EEE----SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE-S------SEEEEEST
T ss_pred EecC--ChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEecc------ccEEEEec
Confidence 4432 2456899999999987654 789999998877 44588888887652 34556666642 12334443
Q ss_pred CCCceeEeeecCCCcccCceee-eEEEeCHhhHHHhhhcccccchhhhhhccchhhhhhhcccccccccccccccccccC
Q 017417 160 DTNELLHYTEKPETFVSDLINC-GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (372)
Q Consensus 160 ~~~~v~~i~ek~~~~~~~~~~~-Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ 238 (372)
++.+.+..+. +.+..+ .=..|+.+.+....+...... .++.- ...++..+
T Consensus 140 -~~~v~~tldR-----~~l~~~QTPQ~F~~~~l~~a~~~a~~~~----------------------~~~tD-dasl~~~~ 190 (221)
T PF01128_consen 140 -DGFVTETLDR-----SKLWAVQTPQAFRFELLLEAYEKADEEG----------------------FEFTD-DASLVEAA 190 (221)
T ss_dssp -TSBEEEEETG-----GGEEEEEEEEEEEHHHHHHHHHTHHHHT----------------------HHHSS-HHHHHHHT
T ss_pred -CCcccccCCH-----HHeeeecCCCeecHHHHHHHHHHHHhcC----------------------CCccC-HHHHHHHc
Confidence 5656554432 233333 225566544444333211100 00000 00122222
Q ss_pred CCCceEEEeecchhhhhcCCccccccchHHH
Q 017417 239 AGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (372)
Q Consensus 239 ~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (372)
+.+|+.++-+..=+-|-+|+|+..|..++
T Consensus 191 --g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 191 --GKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp --TS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred --CCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 56777776666666788999988776554
No 87
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.24 E-value=3.3e-11 Score=103.45 Aligned_cols=108 Identities=22% Similarity=0.460 Sum_probs=77.7
Q ss_pred CCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce---EEEEcccchHHHHHHHhhccCCCCeeEEE
Q 017417 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR---IYLVGFYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 6 ~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~---i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
.+.|.+|||||| .++|| . +|+|++++|+||++|+++.|.. .+|+........ +. ..+.+ +
T Consensus 2 ~~~~~~vILAGG--~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~~~vvi~~~~~~~~--~~-----~~g~~--v 64 (192)
T COG0746 2 MTPMTGVILAGG--KSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQVDVVVISANRNQGR--YA-----EFGLP--V 64 (192)
T ss_pred CCCceEEEecCC--ccccc-c-----ccccceeCCeEHHHHHHHHhcccCCEEEEeCCCchhh--hh-----ccCCc--e
Confidence 457899999999 99999 5 9999999999999999999988 244433322211 21 11222 3
Q ss_pred ecCCccc-ChHHHHHHHHHHhhccCCCeEEEEcCCeee-cCC-hHHHHHHHHhc
Q 017417 83 LREDKPH-GSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEMLDAHRNY 133 (372)
Q Consensus 83 ~~~~~~~-g~~~al~~~~~~l~~~~~~~vlv~~gD~i~-~~~-l~~~l~~~~~~ 133 (372)
+.+.... |....++.++..... +++++++||+++ ..+ +..+++...+.
T Consensus 65 v~D~~~~~GPL~Gi~~al~~~~~---~~~~v~~~D~P~i~~~lv~~l~~~~~~~ 115 (192)
T COG0746 65 VPDELPGFGPLAGILAALRHFGT---EWVLVLPCDMPFIPPELVERLLSAFKQT 115 (192)
T ss_pred eecCCCCCCCHHHHHHHHHhCCC---CeEEEEecCCCCCCHHHHHHHHHhhccc
Confidence 3333333 999999999999874 589999999998 333 56666655443
No 88
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=5.4e-11 Score=87.35 Aligned_cols=67 Identities=36% Similarity=0.494 Sum_probs=53.8
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 298 i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
|++++.|++++.+. +++||++|.|++++.|.+|+|+++++|+++|.|.++++++++.|++++.+..+
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~ 68 (79)
T cd03356 2 IGESTVIGENAIIK-NSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNL 68 (79)
T ss_pred ccCCcEECCCCEEe-CCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCC
Confidence 56777777777776 48888888888888888888888888888888888888888888888877663
No 89
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.23 E-value=5.1e-11 Score=106.92 Aligned_cols=128 Identities=20% Similarity=0.329 Sum_probs=87.2
Q ss_pred CCC-CCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccc-hHHHHHHHhhccC
Q 017417 3 SSE-DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYE-EREFALYVSSISN 74 (372)
Q Consensus 3 ~~~-~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~-~~~i~~~~~~~~~ 74 (372)
++| ++++.+|||||| .|+||+. ..||+|++++|+|+|+|+++.+.. |+|+.+.. .+.+...+..
T Consensus 18 ~~~~~~~i~aIILAAG--~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~--- 89 (252)
T PLN02728 18 AVVKEKSVSVILLAGG--VGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN--- 89 (252)
T ss_pred cccccCceEEEEEccc--ccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh---
Confidence 444 346889999999 9999975 679999999999999999999864 66665543 3333333332
Q ss_pred CCCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEec
Q 017417 75 ELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (372)
Q Consensus 75 ~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~ 144 (372)
++..+.++. ...+..+++++++..+..+ .+.++++.++.++ ...+..+++...+.+ +.+...+.
T Consensus 90 -~~~~i~~v~--gg~~r~~SV~~gl~~l~~~-~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~~~ 155 (252)
T PLN02728 90 -IDVPLKFAL--PGKERQDSVFNGLQEVDAN-SELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGVPV 155 (252)
T ss_pred -cCCceEEcC--CCCchHHHHHHHHHhccCC-CCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEeecc
Confidence 223344442 2245678999999988532 3467777777887 345788888776654 34555553
No 90
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.22 E-value=7.9e-11 Score=99.34 Aligned_cols=116 Identities=21% Similarity=0.253 Sum_probs=85.2
Q ss_pred CCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeE
Q 017417 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPV 80 (372)
Q Consensus 6 ~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i 80 (372)
..++.+|||||| +|+||+. +|.|+|+.|+|++.++++.+.. ++|++.+...+..... ....+..+
T Consensus 3 ~~~v~~VvLAAG--rssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~---~~~~~~~~ 72 (199)
T COG2068 3 PSTVAAVVLAAG--RSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEAL---LAQLGVTV 72 (199)
T ss_pred CcceEEEEEccc--ccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhh---hccCCeEE
Confidence 357899999999 9999996 9999999999999999997664 5665554322221111 12223333
Q ss_pred EEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhc
Q 017417 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY 133 (372)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~ 133 (372)
.... +...|.+.|+..+......+. +.++++.||++. ..++..+++.++..
T Consensus 73 v~np-d~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 73 VVNP-DYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred EeCc-chhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 3333 334799999999999987653 579999999996 56799999887765
No 91
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.22 E-value=8e-11 Score=86.86 Aligned_cols=65 Identities=28% Similarity=0.352 Sum_probs=45.6
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCc
Q 017417 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWS 360 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 360 (372)
++.|++++.|++++.+. +++|++++.|+.++.|.+|+|++++.|++++.+.+|++++++.|++++
T Consensus 16 ~~~Ig~~~~I~~~~~i~-~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 16 RSVIGANCKIGKRVKIT-NCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CcEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 46667777777777665 577777777777777777777777777777777777777666666653
No 92
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.21 E-value=9e-11 Score=102.35 Aligned_cols=127 Identities=19% Similarity=0.263 Sum_probs=92.3
Q ss_pred CCCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEccc-chHHHHHHHhhccCCCCe
Q 017417 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFY-EEREFALYVSSISNELRI 78 (372)
Q Consensus 6 ~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~-~~~~i~~~~~~~~~~~~~ 78 (372)
.+++.+|||||| .|+||+. ..||++++++|+||++|+++.|.. |+|+++. ....+..+.. ...+.
T Consensus 2 ~~~~~~vilAaG--~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~ 73 (230)
T COG1211 2 RMMVSAVILAAG--FGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADK 73 (230)
T ss_pred CceEEEEEEcCc--cccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCC
Confidence 356899999999 9999998 899999999999999999999876 6666664 3333333332 11223
Q ss_pred eEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEec
Q 017417 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (372)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~ 144 (372)
.+.++.. .....+|++++++.+....+++|||+.+=-++ ...+.++++... +..+.+++.++
T Consensus 74 ~v~~v~G--G~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~--~~~aai~alpv 137 (230)
T COG1211 74 RVEVVKG--GATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELAD--KYGAAILALPV 137 (230)
T ss_pred eEEEecC--CccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhc--cCCcEEEEeec
Confidence 4555533 24578999999999985445899999998877 456888884333 34456666665
No 93
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.20 E-value=1.2e-10 Score=85.45 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=61.0
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCCC
Q 017417 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQASS 366 (372)
Q Consensus 298 i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 366 (372)
|++++.|++++.+. ++.|+++|.|+++++|.+|+|++++.|++++.|.++++++++.|++++.+.+++
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 69 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGS 69 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCC
Confidence 67888888888887 799999999999999999999999999999999999999999999998887653
No 94
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.19 E-value=1.8e-10 Score=102.81 Aligned_cols=110 Identities=22% Similarity=0.299 Sum_probs=72.1
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccch--HHHHHHHhhccCCCCeeEEE
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE--REFALYVSSISNELRIPVRY 82 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~--~~i~~~~~~~~~~~~~~i~~ 82 (372)
||||||| .++|| + +|+|+|++|+|||+|+++.+.. ++|++.... +.+..++... ++. +
T Consensus 2 aiIlA~G--~S~R~-~-----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~----~v~--~ 67 (233)
T cd02518 2 AIIQARM--GSTRL-P-----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL----GVK--V 67 (233)
T ss_pred EEEeeCC--CCCCC-C-----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc----CCe--E
Confidence 7999999 99999 4 5999999999999999998753 666666443 4455554421 232 2
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceE
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGT 138 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~ 138 (372)
+..+. .+.......+... .+.+.++++.||+++ ...++++++.+...+.+++
T Consensus 68 v~~~~-~~~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 68 FRGSE-EDVLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred EECCc-hhHHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 32222 2222222222222 223679999999998 4468999988876555443
No 95
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.18 E-value=1.2e-10 Score=110.55 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=81.8
Q ss_pred CeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce----EEEEcccchHHHHHHHhhccCCCCeeEEEe
Q 017417 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 8 ~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
++.+|||||| .|+||+ ..||+|+|++|+|||+|+++.+.. |+|+.......+..++.. ..+...
T Consensus 5 ~i~~VILAgG--~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~~~~~iivvv~~~~~~~~~~~~~------~~~i~d 72 (366)
T PRK14489 5 QIAGVILAGG--LSRRMN----GRDKALILLGGKPLIERVVDRLRPQFARIHLNINRDPARYQDLFPG------LPVYPD 72 (366)
T ss_pred CceEEEEcCC--cccCCC----CCCCceeEECCeeHHHHHHHHHHhhCCEEEEEcCCCHHHHHhhccC------CcEEec
Confidence 6889999999 999995 249999999999999999998865 565443333333332211 122111
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEE
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTIL 140 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~ 140 (372)
......|...+++.++..++. +.+++++||+++ ...+..+++.+...++++++.
T Consensus 73 ~~~g~~G~~~si~~gl~~~~~---~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~ 128 (366)
T PRK14489 73 ILPGFQGPLSGILAGLEHADS---EYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP 128 (366)
T ss_pred CCCCCCChHHHHHHHHHhcCC---CcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence 122235889999999998753 569999999987 345788888766555554443
No 96
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.14 E-value=4.6e-10 Score=94.47 Aligned_cols=78 Identities=22% Similarity=0.322 Sum_probs=70.2
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
+.+.+.++++|++++.|++++.|.++++||++|.|++++.|.+|+|++++.|++++.+.+++|++++.|++++.+..+
T Consensus 28 ~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~ 105 (163)
T cd05636 28 SGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANL 105 (163)
T ss_pred CCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEccc
Confidence 455677788999999999999998889999999999999999999999999999999999999999999999988653
No 97
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.13 E-value=4.6e-10 Score=82.80 Aligned_cols=66 Identities=27% Similarity=0.525 Sum_probs=62.5
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcC
Q 017417 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 298 i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (372)
|++++.|++++.+. ++.||++|.|+++++|.+|+|++++.|+++|.|.+|++++++.|++++.+.+
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~ 67 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD 67 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEcc
Confidence 78899999999997 8999999999999999999999999999999999999999999999999865
No 98
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.12 E-value=5.4e-10 Score=86.54 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=67.3
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
+.+ .+++|++++.|+ ++.+. +|+|+++|.|++++.|.+|+|++++.|+++|.|.+|+|++++.|++++.+.+.
T Consensus 8 ~~i-~~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 8 GEV-KNSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred CEE-EeEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 344 357899999998 88887 99999999999999999999999999999999999999999999999999876
No 99
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.08 E-value=6.5e-10 Score=95.49 Aligned_cols=76 Identities=20% Similarity=0.318 Sum_probs=43.8
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC---CcEECCCCEECCCcEE-----eceEECCCCEECCCcEEEceEECCCCEECCC
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGP---NVSISANARIGAGVRL-----ISCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~---~s~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (372)
+.+.+.+++.|++++.|+++|+|.+ ..+||++|.|+++|+| .+|+|+++++|+++|.|.+|+|++++.||.+
T Consensus 19 ~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~g 98 (192)
T TIGR02287 19 PTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMN 98 (192)
T ss_pred CCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCC
Confidence 3444555666666666666666652 3555666666666665 3456666666666655555555555555555
Q ss_pred cEEc
Q 017417 360 SRVQ 363 (372)
Q Consensus 360 ~~i~ 363 (372)
+.+.
T Consensus 99 a~I~ 102 (192)
T TIGR02287 99 AVVM 102 (192)
T ss_pred cccC
Confidence 4443
No 100
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.08 E-value=1.2e-09 Score=92.06 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=68.6
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEEceEECCCCEECCCcEEc
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 363 (372)
+...+.++++|++++.|++++.+.++++||++|+|++++.|. +|+|+++|.|++++.|.+|++++++.|++++.+.
T Consensus 10 ~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~ 86 (163)
T cd05636 10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVG 86 (163)
T ss_pred CCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEe
Confidence 456778889999999999999999999999999999999998 6999999999999999999999998887766553
No 101
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.08 E-value=1.2e-09 Score=91.18 Aligned_cols=51 Identities=33% Similarity=0.441 Sum_probs=24.6
Q ss_pred cEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcC
Q 017417 314 VSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 314 s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 364 (372)
++|+++|.|+.++.+.+|+|+++|.|+.+|.|. ++.|++++.|+.++.+.+
T Consensus 62 ~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~ 113 (155)
T cd04745 62 TVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKA 113 (155)
T ss_pred eEEcCCCEECCCcEEECCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCC
Confidence 444444444444444444455555555554444 344555555555544443
No 102
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.06 E-value=1.9e-09 Score=82.74 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=67.4
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCCC
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQASS 366 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 366 (372)
+.+.+.++++|++++.|++++.|.+++.||++|+|+. .|.+|+|++++.+++++.|.+++|++++.||+++.+..-.
T Consensus 22 ~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~~~ 98 (101)
T cd05635 22 PFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSDLK 98 (101)
T ss_pred CCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceecccc
Confidence 3456677888999999999999998899999999975 6889999999999999999999999999999998876543
No 103
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.03 E-value=2.1e-09 Score=93.05 Aligned_cols=71 Identities=18% Similarity=0.282 Sum_probs=36.3
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEE
Q 017417 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRV 362 (372)
Q Consensus 291 ~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 362 (372)
.+.+++.|++++.|++++.|. ++.||++|.|++++.|.+|+|++++.|++++.|. ++.|++++.|+.++.+
T Consensus 29 ~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i 100 (193)
T cd03353 29 ILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEI 100 (193)
T ss_pred EEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEE
Confidence 344444455555555555554 3455555555555555555555555555555554 4555555555444443
No 104
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.03 E-value=2.3e-09 Score=88.67 Aligned_cols=82 Identities=32% Similarity=0.416 Sum_probs=63.7
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC-------------------------CcEECCCCEECCCcEEeceEECCCCEECCC
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGP-------------------------NVSISANARIGAGVRLISCIILDGVEIMEN 342 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~-------------------------~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~ 342 (372)
+.+.+.+++.|++++.|++++++++ .+.||++|+||.++.|..|.|+++|-||-+
T Consensus 22 ~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmg 101 (176)
T COG0663 22 PSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMG 101 (176)
T ss_pred CCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecC
Confidence 4556666677777777766666662 477888888888888888999999999888
Q ss_pred cEEEc-eEECCCCEECCCcEEcCCCCcC
Q 017417 343 AVVTN-AIVGWKSSIGRWSRVQASSKYN 369 (372)
Q Consensus 343 ~~i~~-~~i~~~~~i~~~~~i~~~~~~~ 369 (372)
++|-+ +.||++|.||.++.+.++.+-|
T Consensus 102 A~vldga~IG~~~iVgAgalV~~~k~~p 129 (176)
T COG0663 102 ATVLDGAVIGDGSIVGAGALVTPGKEIP 129 (176)
T ss_pred ceEeCCcEECCCcEEccCCcccCCcCCC
Confidence 88885 8999999999998888875443
No 105
>PLN02472 uncharacterized protein
Probab=99.01 E-value=3.1e-09 Score=94.60 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=44.9
Q ss_pred cEECCCCEECCCCEEC----------CCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcC
Q 017417 296 VYVHPSAKIHPTAKIG----------PNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~----------~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 364 (372)
+.||+++.|+++|+|. ++++||++|.||.+|.|.+|+|+++|.||.+|+|. +++|++++.|++++.+.+
T Consensus 99 I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~ 178 (246)
T PLN02472 99 ITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPP 178 (246)
T ss_pred eEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence 4555555555555553 24666666666666666666777777776666665 666666666666666665
Q ss_pred CC
Q 017417 365 SS 366 (372)
Q Consensus 365 ~~ 366 (372)
+.
T Consensus 179 g~ 180 (246)
T PLN02472 179 GR 180 (246)
T ss_pred CC
Confidence 53
No 106
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.01 E-value=3.4e-09 Score=77.67 Aligned_cols=67 Identities=28% Similarity=0.314 Sum_probs=59.9
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEc-eEECCCCEECC
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTN-AIVGWKSSIGR 358 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~ 358 (372)
..+.+ +.|++++.|++++.+. +++|+++|.|++++.|.+|+|++++.|++++.+.+ +++++++.|++
T Consensus 12 ~~i~~-s~ig~~~~Ig~~~~i~-~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 12 AIIKN-SVIGDNVRIGDGVTIT-NSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEeC-CEECCCCEECCCCEEe-CCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence 44544 8899999999999997 89999999999999999999999999999999996 99888888764
No 107
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.99 E-value=2.3e-09 Score=102.17 Aligned_cols=105 Identities=15% Similarity=0.285 Sum_probs=73.3
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce----EEEEcccchHHHHHHHhhccCCCCeeEEE
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
+++.+|||||| +|+||+. +|+|+|++|+|||+|+++.+.. |+|+.+.... .. +.. +++++..
T Consensus 173 ~~i~~iILAGG--~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~~~~vvV~~~~~~~--~~-~~~----~~v~~i~ 238 (369)
T PRK14490 173 VPLSGLVLAGG--RSSRMGS-----DKALLSYHESNQLVHTAALLRPHCQEVFISCRAEQA--EQ-YRS----FGIPLIT 238 (369)
T ss_pred CCceEEEEcCC--ccccCCC-----CcEEEEECCccHHHHHHHHHHhhCCEEEEEeCCchh--hH-Hhh----cCCcEEe
Confidence 56789999999 9999976 9999999999999999999865 6565543321 11 111 1233322
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee-cC-ChHHHHHH
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SF-PLPEMLDA 129 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~-~~-~l~~~l~~ 129 (372)
......|...++..++..... +.++++.||+++ .. .+..+++.
T Consensus 239 -d~~~~~Gpl~gi~~al~~~~~---~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 239 -DSYLDIGPLGGLLSAQRHHPD---AAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred -CCCCCCCcHHHHHHHHHhCCC---CcEEEEeCCcCCCCHHHHHHHHHh
Confidence 222236888888888776543 468999999998 33 46666654
No 108
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.99 E-value=4.3e-09 Score=87.55 Aligned_cols=73 Identities=27% Similarity=0.250 Sum_probs=38.7
Q ss_pred EEcCCcEECCCCEECCCCEECCC---cEECCCCEECCCcEEec-----eEECCCCEECCCcEEEceEECCCCEECCCcEE
Q 017417 291 TIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLIS-----CIILDGVEIMENAVVTNAIVGWKSSIGRWSRV 362 (372)
Q Consensus 291 ~~~~~~~i~~~~~i~~~~~i~~~---s~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 362 (372)
.+.+++.||+++.|++++.|.+. ..||++|.|+++|.|.. ++|++++.|+++|.+.+++|++++.|+.++.+
T Consensus 14 ~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i 93 (154)
T cd04650 14 YVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAIL 93 (154)
T ss_pred EEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEE
Confidence 34455555555555555555432 35555555555555542 45555555555555555555555555555444
Q ss_pred c
Q 017417 363 Q 363 (372)
Q Consensus 363 ~ 363 (372)
.
T Consensus 94 ~ 94 (154)
T cd04650 94 L 94 (154)
T ss_pred e
Confidence 3
No 109
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=98.98 E-value=1.5e-09 Score=98.33 Aligned_cols=72 Identities=28% Similarity=0.325 Sum_probs=36.6
Q ss_pred EcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE-ceEECCCCEECCCcEEc
Q 017417 292 IIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 292 ~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (372)
+.+.+.+++++.|+++++|.+++.||++|.|++++.|. +|.||++|.|+++++|. ++.||++|.|++|+.|.
T Consensus 108 i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG 181 (338)
T COG1044 108 IDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIG 181 (338)
T ss_pred ccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEc
Confidence 33344444444444444444444444444444444443 35555555555555555 45566666666665554
No 110
>PLN02296 carbonate dehydratase
Probab=98.98 E-value=3.9e-09 Score=95.17 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=39.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCC---cEECCCCEECCCcEEe-----------ceEECCCCEECCCcEEEceEECCCC
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLI-----------SCIILDGVEIMENAVVTNAIVGWKS 354 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~~---s~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~~i~~~~ 354 (372)
.+.+.+++.||+++.|+++++|.+. ++||++|.|+++|.|. +|+||++|+|+++|+|.+++|+++|
T Consensus 64 ~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v 143 (269)
T PLN02296 64 SASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEA 143 (269)
T ss_pred CcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCc
Confidence 3444455556666666655555532 3555555555555552 3555555555555555555555555
Q ss_pred EECCCcEEcC
Q 017417 355 SIGRWSRVQA 364 (372)
Q Consensus 355 ~i~~~~~i~~ 364 (372)
.||.++.|.+
T Consensus 144 ~IG~ga~I~~ 153 (269)
T PLN02296 144 FVGMGATLLD 153 (269)
T ss_pred EECCCcEECC
Confidence 4444444443
No 111
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.97 E-value=5.8e-09 Score=76.66 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=59.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEc-eEECCCCEECC
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTN-AIVGWKSSIGR 358 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~ 358 (372)
.+.+.++++|++++.|++++.|. +++++++++|++++.|.+|++++++.|++++.+.. +++++++.|+.
T Consensus 11 ~~~i~~~~~Ig~~~~Ig~~~~i~-~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 11 TAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIKD 80 (80)
T ss_pred CCEECCCCEECCCCEECCCcEEe-eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEECC
Confidence 45566778888888888888887 89999999999999999999999999999999995 88888877763
No 112
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.97 E-value=5.8e-09 Score=75.98 Aligned_cols=67 Identities=39% Similarity=0.490 Sum_probs=53.6
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCcEEec---------eEECCCCEECCCcEEE-ceEECCCCEECCCcEE
Q 017417 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSSIGRWSRV 362 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 362 (372)
++|++++.|++++++.+++.||++|.|++++.|.+ ..|++++.|+.+|.+. ++.|++++.|++++.|
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence 35788888888888887789999999999988875 5778888888877776 6777777777777765
No 113
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.96 E-value=6.6e-09 Score=89.60 Aligned_cols=77 Identities=23% Similarity=0.358 Sum_probs=44.4
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCC---cEECCCCEECCCcEEe-----ceEECCCCEECCCcEEEceEECCCCEECCC
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLI-----SCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~~---s~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (372)
+.+.+.+++.||+++.|+++++|+++ ++|+++|.|+++|.|. +|+|++++.|++++.+.+++|++++.||.+
T Consensus 21 ~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~g 100 (196)
T PRK13627 21 PSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMN 100 (196)
T ss_pred CCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcC
Confidence 34455566667777777777766532 3555555555555552 355666666666655555555555555555
Q ss_pred cEEcC
Q 017417 360 SRVQA 364 (372)
Q Consensus 360 ~~i~~ 364 (372)
+.+.+
T Consensus 101 a~V~~ 105 (196)
T PRK13627 101 SVIMD 105 (196)
T ss_pred CccCC
Confidence 55443
No 114
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.94 E-value=4.9e-09 Score=98.18 Aligned_cols=106 Identities=14% Similarity=0.271 Sum_probs=75.3
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce----EEEEcccchHHHHHHHhhccCCCCeeEEE
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (372)
.++.+|||||| +|+||+. +|.|+|+.|+||++|+++.+.. |+|+.+... .. +.. .. .+++.
T Consensus 159 ~~i~~IILAGG--kSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~~~~ViVv~~~~~--~~-~~~--~~--~v~~I- 223 (346)
T PRK14500 159 TPLYGLVLTGG--KSRRMGK-----DKALLNYQGQPHAQYLYDLLAKYCEQVFLSARPSQ--WQ-GTP--LE--NLPTL- 223 (346)
T ss_pred CCceEEEEecc--ccccCCC-----CcccceeCCccHHHHHHHHHHhhCCEEEEEeCchH--hh-hcc--cc--CCeEE-
Confidence 47889999999 9999976 9999999999999999998876 666654321 11 100 00 12221
Q ss_pred ecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee-c-CChHHHHHHH
Q 017417 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAH 130 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~-~-~~l~~~l~~~ 130 (372)
.......|...+++.++..... +.++++.||+++ . ..+..+++.+
T Consensus 224 ~D~~~~~GPlagI~aaL~~~~~---~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 224 PDRGESVGPISGILTALQSYPG---VNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred eCCCCCCChHHHHHHHHHhCCC---CCEEEEECCcCCCCHHHHHHHHHhh
Confidence 2223347999999999987653 357899999997 3 3477777765
No 115
>PLN02472 uncharacterized protein
Probab=98.94 E-value=7.2e-09 Score=92.21 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=68.9
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECCC---cEECCCCEECCCcEEe-----------ceEECCCCEECCCcEEEceEECC
Q 017417 287 TKNATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLI-----------SCIILDGVEIMENAVVTNAIVGW 352 (372)
Q Consensus 287 ~~~~~~~~~~~i~~~~~i~~~~~i~~~---s~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~~i~~ 352 (372)
.+.+.+.+++.|++++.|+++++|.+. ..||++|.|+++|.|. +++||++|+|+++|.|.+|+|++
T Consensus 69 ~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd 148 (246)
T PLN02472 69 APNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEP 148 (246)
T ss_pred CCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcC
Confidence 356778888999999999999998864 7899999999999884 58999999999999999999999
Q ss_pred CCEECCCcEEcCCC
Q 017417 353 KSSIGRWSRVQASS 366 (372)
Q Consensus 353 ~~~i~~~~~i~~~~ 366 (372)
+|.||.++.|..++
T Consensus 149 ~v~IG~~svI~~ga 162 (246)
T PLN02472 149 ECIIGQHSILMEGS 162 (246)
T ss_pred CCEECCCCEECCCC
Confidence 99999988887654
No 116
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.9e-09 Score=104.05 Aligned_cols=71 Identities=25% Similarity=0.396 Sum_probs=57.1
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcCC
Q 017417 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (372)
.+.+||++|.||.++.|. +|+|+.+|+||.||+|.+|+|++++.|+++|.+. +|+++.++++|++-.+..+
T Consensus 349 ~NSVIG~~c~IgsN~~I~-~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 349 SNSVIGANCRIGSNVRIK-NSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred ecceecCCCEecCceEEe-eeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence 367788888888888886 8888888888888888888888888888888886 7888888888877776544
No 117
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.91 E-value=1.2e-08 Score=80.96 Aligned_cols=77 Identities=25% Similarity=0.296 Sum_probs=63.6
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe----------------ceEECCCCEECCCcEEE-ceEEC
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----------------SCIILDGVEIMENAVVT-NAIVG 351 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~----------------~~~i~~~~~i~~~~~i~-~~~i~ 351 (372)
...+.++++|++++.|++++.+.+++.||++|.|++++.+. +++|+++|.|++++.+. ++.|+
T Consensus 10 ~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig 89 (119)
T cd03358 10 NVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTIG 89 (119)
T ss_pred CcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCcEEC
Confidence 34567778888888888888887788899999998888763 57888999999999987 68999
Q ss_pred CCCEECCCcEEcCC
Q 017417 352 WKSSIGRWSRVQAS 365 (372)
Q Consensus 352 ~~~~i~~~~~i~~~ 365 (372)
+++.|+.++.+...
T Consensus 90 ~~~~i~~~~~v~~~ 103 (119)
T cd03358 90 EYALVGAGAVVTKD 103 (119)
T ss_pred CCCEEccCCEEeCc
Confidence 99999999888653
No 118
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=98.91 E-value=5.5e-09 Score=94.77 Aligned_cols=70 Identities=27% Similarity=0.347 Sum_probs=32.8
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE--------------------ceEECCCC
Q 017417 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT--------------------NAIVGWKS 354 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------~~~i~~~~ 354 (372)
+.||+++.|+++++|++++.||++|.|+++++|. ++.||++|.|++|++|. +++|+++|
T Consensus 130 v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~V 209 (338)
T COG1044 130 VVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDV 209 (338)
T ss_pred CEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCce
Confidence 3333333333333333334444444444444443 25555555555555543 25555666
Q ss_pred EECCCcEEcCC
Q 017417 355 SIGRWSRVQAS 365 (372)
Q Consensus 355 ~i~~~~~i~~~ 365 (372)
.||.++.|..+
T Consensus 210 eIGanT~Idrg 220 (338)
T COG1044 210 EIGANTTIDRG 220 (338)
T ss_pred EEcccceeccc
Confidence 66666655443
No 119
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.89 E-value=1.5e-08 Score=84.30 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=38.7
Q ss_pred cEECCCCEECCCCEECCC----cEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcCC
Q 017417 296 VYVHPSAKIHPTAKIGPN----VSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~----s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (372)
++|++++.|++++++... ++||++|.|+.+++|.+++|++++.|+.++.+. +++|++++.|+.++.+.++
T Consensus 39 ~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~ 113 (153)
T cd04645 39 IRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPG 113 (153)
T ss_pred eEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCC
Confidence 345555555555555421 455555555555555555555555555555555 5555555555555555443
No 120
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.88 E-value=2.1e-08 Score=84.31 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=45.6
Q ss_pred CcEECCCCEECCCCEECC----------CcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEc
Q 017417 295 DVYVHPSAKIHPTAKIGP----------NVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~----------~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (372)
++.||+++.|++++.|.. ++.||+++.++.++.|.+++|+++|.|+.+|.|. ++.|++++.||.++.|.
T Consensus 38 ~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~ 117 (164)
T cd04646 38 PIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLP 117 (164)
T ss_pred CeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEEC
Confidence 345555666666555542 2346666666666666667777777777777775 67777777777777776
Q ss_pred CC
Q 017417 364 AS 365 (372)
Q Consensus 364 ~~ 365 (372)
++
T Consensus 118 ~~ 119 (164)
T cd04646 118 SS 119 (164)
T ss_pred CC
Confidence 54
No 121
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.88 E-value=1.3e-08 Score=91.95 Aligned_cols=76 Identities=18% Similarity=0.090 Sum_probs=54.9
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEEc-------
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVTN------- 347 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~------- 347 (372)
+.+.+.+++.|++++.|+++++|.+++.||++|.|++++.|. +++|+++|.|+++|+|..
T Consensus 22 p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~ 101 (254)
T cd03351 22 PFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGG 101 (254)
T ss_pred CCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCC
Confidence 344555666777777777777777777777777777777775 577888888888888863
Q ss_pred -eEECCCCEECCCcEEc
Q 017417 348 -AIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 348 -~~i~~~~~i~~~~~i~ 363 (372)
+.||+++.|+.++.|.
T Consensus 102 ~~~IG~~~~I~~~~~I~ 118 (254)
T cd03351 102 VTRIGNNNLLMAYVHVA 118 (254)
T ss_pred ceEECCCCEECCCCEEC
Confidence 6777777777776663
No 122
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.86 E-value=9.2e-09 Score=79.62 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=52.0
Q ss_pred CEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcC
Q 017417 302 AKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 302 ~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (372)
+.|++++.+. +|+||++|.|+ ++.|.+|+||++++|+++|.|.+|++++++.|+.++.+..
T Consensus 2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~ 62 (104)
T cd04651 2 PYIGRRGEVK-NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRR 62 (104)
T ss_pred ceecCCCEEE-eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEe
Confidence 4566777775 88899999998 8999999999999999999999999999999998888753
No 123
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.86 E-value=1.6e-08 Score=89.92 Aligned_cols=71 Identities=24% Similarity=0.256 Sum_probs=53.0
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCcEE---------eceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcC
Q 017417 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL---------ISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i---------~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 364 (372)
++.|+.++.|.++++|+.++.||++|.|+.++.| .+++|+++|.||.+|.|. ++.|+++++||.++.|.+
T Consensus 129 ga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~ 208 (269)
T TIGR00965 129 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQ 208 (269)
T ss_pred CcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECC
Confidence 4556666666666777767777777777777666 357888888888888887 788888888888888865
Q ss_pred C
Q 017417 365 S 365 (372)
Q Consensus 365 ~ 365 (372)
+
T Consensus 209 ~ 209 (269)
T TIGR00965 209 S 209 (269)
T ss_pred C
Confidence 4
No 124
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.86 E-value=1.3e-08 Score=94.87 Aligned_cols=75 Identities=27% Similarity=0.328 Sum_probs=39.0
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE-ceEECCCCEECCCcEEc
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (372)
.+.+.+++.|++++.|+++++|++++.||++|+|++++.|. ++.||++|.|+++|+|. +++||++|.|++++.|.
T Consensus 97 ~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg 173 (324)
T TIGR01853 97 TAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIG 173 (324)
T ss_pred CCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEEC
Confidence 34444455555555555555555555555555555555552 45555555555555554 55555555555555553
No 125
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.85 E-value=1.9e-08 Score=91.19 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=42.1
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEEc--------e
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVTN--------A 348 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~--------~ 348 (372)
+.+.+++.|++++.|+++++|.+++.||++|.|++++.|. .++||++|.|+++|+|.. +
T Consensus 27 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t 106 (262)
T PRK05289 27 CVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVT 106 (262)
T ss_pred eEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCee
Confidence 3444455555555555555555566666666666666664 366666666666666653 2
Q ss_pred EECCCCEECCCcEE
Q 017417 349 IVGWKSSIGRWSRV 362 (372)
Q Consensus 349 ~i~~~~~i~~~~~i 362 (372)
.||+++.|+.++.|
T Consensus 107 ~IG~~~~I~~~~~I 120 (262)
T PRK05289 107 RIGDNNLLMAYVHV 120 (262)
T ss_pred EECCceEECCCCEE
Confidence 45555555555544
No 126
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.85 E-value=2.9e-08 Score=89.77 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=47.8
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEE--------c
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVT--------N 347 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~--------~ 347 (372)
.+.+.+++.|++++.|++++.|.+++.||++|.|++++.|. +++||++|.|+++|+|. .
T Consensus 22 ~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~ 101 (254)
T TIGR01852 22 FCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGV 101 (254)
T ss_pred CCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCc
Confidence 34455556666666666666666667777777777777775 46777777777777775 3
Q ss_pred eEECCCCEECCCcEE
Q 017417 348 AIVGWKSSIGRWSRV 362 (372)
Q Consensus 348 ~~i~~~~~i~~~~~i 362 (372)
+.||+++.|+.++.|
T Consensus 102 ~~IG~~~~I~~~~~I 116 (254)
T TIGR01852 102 TRIGNNNLLMAYSHI 116 (254)
T ss_pred EEECCCCEECCCCEE
Confidence 456666666555555
No 127
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.84 E-value=1.8e-08 Score=86.55 Aligned_cols=73 Identities=23% Similarity=0.359 Sum_probs=65.9
Q ss_pred CcEECCCCEECCCCEEC----CCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcCCCC
Q 017417 295 DVYVHPSAKIHPTAKIG----PNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQASSK 367 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~----~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~ 367 (372)
+++|++++.|+++|+|. .+|+|+++|.|+.++.|.+|+|+++|.|+.++.+. ++.|++++.|++++.+.++.+
T Consensus 47 ~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ 124 (192)
T TIGR02287 47 RIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAE 124 (192)
T ss_pred ceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCE
Confidence 57888899999999984 47999999999999999999999999999999998 799999999999999987644
No 128
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.83 E-value=1.5e-07 Score=87.43 Aligned_cols=182 Identities=17% Similarity=0.296 Sum_probs=108.3
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccC---CcchhhhhHhhcce----------------EEEEcc-cchHHHH
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR----------------IYLVGF-YEEREFA 66 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~---g~pli~~~l~~l~~----------------i~vv~~-~~~~~i~ 66 (372)
.++.+|||||| .||||+ ...||+|+||+ |+|++++.++.+.. +++.++ +..+.+.
T Consensus 14 ~~va~viLaGG--~GTRLg---~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~ 88 (323)
T cd04193 14 GKVAVLLLAGG--QGTRLG---FDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETR 88 (323)
T ss_pred CCEEEEEECCC--cccccC---CCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHH
Confidence 47899999999 999994 58899999998 69999999887643 455555 5567788
Q ss_pred HHHhhccCCCCe---eEEEecCC---------------------cccChHHHHHH-----HHHHhhccCCCeEEEEcCCe
Q 017417 67 LYVSSISNELRI---PVRYLRED---------------------KPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDV 117 (372)
Q Consensus 67 ~~~~~~~~~~~~---~i~~~~~~---------------------~~~g~~~al~~-----~~~~l~~~~~~~vlv~~gD~ 117 (372)
+++++. ..+++ .+.+..|. .+.|.++-... .++.+....-+++.+.+.|.
T Consensus 89 ~~~~~~-~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 167 (323)
T cd04193 89 KFFKEN-NYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDN 167 (323)
T ss_pred HHHHhC-CcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCc
Confidence 898863 33443 34433321 13444433332 23444444457899999999
Q ss_pred eec-CChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCceeEeeecCCCc----------ccCceeeeEEEe
Q 017417 118 CCS-FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF----------VSDLINCGVYVF 186 (372)
Q Consensus 118 i~~-~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~v~~i~ek~~~~----------~~~~~~~Giy~~ 186 (372)
+.. ..-..++-.+...+.++.+-+.+... ....-|.+......-.+.++.+-|... ..+..++.+.+|
T Consensus 168 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~-~~ekvG~l~~~~g~~~vvEysel~~~~~~~~~~~g~l~f~~~ni~~~~f 246 (323)
T cd04193 168 ILVKVADPVFIGFCISKGADVGAKVVRKRY-PTEKVGVVVLVDGKPQVVEYSEISDELAEKRDADGELQYNAGNIANHFF 246 (323)
T ss_pred ccccccCHHHhHHHHHcCCceEEEEEECCC-CCCceeEEEEECCeEEEEEeecCCHHHHhccCcCCcEecccchHhhhee
Confidence 753 33344566667777888775544321 123344444321122455555533211 112233445667
Q ss_pred CHhhHHHhh
Q 017417 187 TPDIFNAIQ 195 (372)
Q Consensus 187 ~~~~~~~l~ 195 (372)
+-++++.+.
T Consensus 247 sl~fl~~~~ 255 (323)
T cd04193 247 SLDFLEKAA 255 (323)
T ss_pred CHHHHHHHH
Confidence 766666554
No 129
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.81 E-value=4.9e-08 Score=79.81 Aligned_cols=75 Identities=25% Similarity=0.264 Sum_probs=54.3
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe---------ceEECCCCEECCCcEEE-ceEECCCCEECCCc
Q 017417 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI---------SCIILDGVEIMENAVVT-NAIVGWKSSIGRWS 360 (372)
Q Consensus 291 ~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~ 360 (372)
.+..++.|++++.|.+++++..++.||++|.|+.++.|. ++.|++++.|+.+++|. ++.|++++.|++++
T Consensus 27 ~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~ 106 (139)
T cd03350 27 YVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGV 106 (139)
T ss_pred EEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCC
Confidence 344455666666666666666677777777777777774 37788888888888886 78888888888888
Q ss_pred EEcCC
Q 017417 361 RVQAS 365 (372)
Q Consensus 361 ~i~~~ 365 (372)
.|.++
T Consensus 107 ~V~~~ 111 (139)
T cd03350 107 VLTQS 111 (139)
T ss_pred EEcCC
Confidence 88753
No 130
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.81 E-value=4e-08 Score=81.94 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=68.2
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC---CcEECCCCEECCCcEE-----eceEECCCCEECCCcEEEceEECCCCEECCC
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGP---NVSISANARIGAGVRL-----ISCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~---~s~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (372)
+.+.+.+++.|++++.|+++++|.+ ++.||++|.|+++|.| .+|+|++++.|++++.+.+++|++++.|+.+
T Consensus 11 ~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~ 90 (155)
T cd04745 11 PTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMN 90 (155)
T ss_pred CCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCC
Confidence 3456777899999999999999875 4899999999999999 5799999999999999999999999999988
Q ss_pred cEEcCC
Q 017417 360 SRVQAS 365 (372)
Q Consensus 360 ~~i~~~ 365 (372)
+.|.++
T Consensus 91 ~~I~~g 96 (155)
T cd04745 91 AVVMDG 96 (155)
T ss_pred CEEeCC
Confidence 888765
No 131
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.81 E-value=3.7e-08 Score=72.01 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=55.9
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECC
Q 017417 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGR 358 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~ 358 (372)
++.+++++.|++++.+. ++.|++++.|+++++|.+++|++++.|++++.|. ++.+++++.||+
T Consensus 16 ~s~ig~~~~ig~~~~i~-~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 16 NSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred ccEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence 57889999999999997 8999999999999999999999999999998888 677777777764
No 132
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.81 E-value=1.9e-08 Score=93.75 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=8.8
Q ss_pred CCEECCCcEEcCCC
Q 017417 353 KSSIGRWSRVQASS 366 (372)
Q Consensus 353 ~~~i~~~~~i~~~~ 366 (372)
.++||+++.|..++
T Consensus 195 ~vvIgd~v~IGa~~ 208 (324)
T TIGR01853 195 RVIIEDDVEIGANT 208 (324)
T ss_pred eEEECCCcEECCCC
Confidence 36677777776553
No 133
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.80 E-value=5e-08 Score=81.78 Aligned_cols=77 Identities=27% Similarity=0.211 Sum_probs=61.0
Q ss_pred CcEEcCCcEECCCCEECC--CCEECCCcEECCCCEECCCcEEec---------eEECCCCEECCCcEEE-ceEECCCCEE
Q 017417 289 NATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSSI 356 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~--~~~i~~~s~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (372)
...+.+++.|++++.|++ +++|++++.||++|.|+.+++|.. ++|+++|.|+.+|+|. ++.||+++.|
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~I 140 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKI 140 (162)
T ss_pred CeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEE
Confidence 345666677777777764 367776777888888887777753 5899999999999999 7999999999
Q ss_pred CCCcEEcCC
Q 017417 357 GRWSRVQAS 365 (372)
Q Consensus 357 ~~~~~i~~~ 365 (372)
|+++.|...
T Consensus 141 ga~s~V~~d 149 (162)
T TIGR01172 141 GANSVVLKD 149 (162)
T ss_pred CCCCEECCC
Confidence 999999754
No 134
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.80 E-value=5.4e-08 Score=83.93 Aligned_cols=71 Identities=25% Similarity=0.277 Sum_probs=39.9
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcCC
Q 017417 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (372)
++.|++++.|++++.|..++.||++|.|+.++.+. +++|+++|.|+.+|.+. ++.|++++.|+.++.+.+.
T Consensus 114 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~ 186 (197)
T cd03360 114 DARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD 186 (197)
T ss_pred CCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC
Confidence 33333333333334443344444444444444444 46677777777777766 5677777777777776543
No 135
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.79 E-value=3.9e-08 Score=88.85 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=47.7
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC------------CcEECCCCEECCCcEEe--------ceEECCCCEECCCcEEE-
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGP------------NVSISANARIGAGVRLI--------SCIILDGVEIMENAVVT- 346 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~------------~s~ig~~~~i~~~~~i~--------~~~i~~~~~i~~~~~i~- 346 (372)
+.+.+.+++.||+++.|+++++|++ ++.||++|.|+++|+|. .++||++|.|+++++|.
T Consensus 40 ~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~ 119 (254)
T cd03351 40 SHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAH 119 (254)
T ss_pred CCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECC
Confidence 3445566677777777777777753 56777777777777774 36677777776666663
Q ss_pred ceEECCCCEECCCcEE
Q 017417 347 NAIVGWKSSIGRWSRV 362 (372)
Q Consensus 347 ~~~i~~~~~i~~~~~i 362 (372)
+|.|++++.|+.++.+
T Consensus 120 ~~~IG~~~~i~~~~~i 135 (254)
T cd03351 120 DCVIGNNVILANNATL 135 (254)
T ss_pred CCEECCCcEECCCccc
Confidence 5555555555444444
No 136
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.79 E-value=6.1e-08 Score=84.20 Aligned_cols=75 Identities=24% Similarity=0.279 Sum_probs=48.5
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcCC
Q 017417 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 291 ~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (372)
.+.+++.|++++.|++++.+..++.||++|.|+.++.|. ++.|+++|.|+.++++. ++.|++++.|+.++.+...
T Consensus 113 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~ 189 (201)
T TIGR03570 113 VINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKD 189 (201)
T ss_pred EECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCc
Confidence 334445555555555555555556666666666666665 57777777777777776 6777777777777777653
No 137
>PLN02296 carbonate dehydratase
Probab=98.78 E-value=4.6e-08 Score=88.29 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=63.1
Q ss_pred cEECCCCEECCCCEEC----------CCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcC
Q 017417 296 VYVHPSAKIHPTAKIG----------PNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~----------~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 364 (372)
+.||+++.|+++|+|. .+++||++|.|+.+|.|.+|+|+++|.|+.+|+|. ++.|++++.|+.++.|.+
T Consensus 92 I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~ 171 (269)
T PLN02296 92 ISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQ 171 (269)
T ss_pred eEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECCCcEECCCeEECCCCEECCCCEEec
Confidence 5888899999988885 36899999999999999999999999999999997 899999999999999877
Q ss_pred C
Q 017417 365 S 365 (372)
Q Consensus 365 ~ 365 (372)
+
T Consensus 172 ~ 172 (269)
T PLN02296 172 N 172 (269)
T ss_pred C
Confidence 6
No 138
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.77 E-value=3.6e-08 Score=87.37 Aligned_cols=77 Identities=27% Similarity=0.290 Sum_probs=66.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEec---------eEECCCCEECCCcEEE-ceEECCCCEECC
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSSIGR 358 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i~~ 358 (372)
.+.+.+++.||+++.|++++.+.++++||++|.|+.+++|.+ ++|+++|.|+.+++|. ++.|++++.|++
T Consensus 110 ~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~Iga 189 (231)
T TIGR03532 110 GAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAA 189 (231)
T ss_pred CcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECC
Confidence 345566778888888888888888999999999999999974 8999999999999997 999999999999
Q ss_pred CcEEcCC
Q 017417 359 WSRVQAS 365 (372)
Q Consensus 359 ~~~i~~~ 365 (372)
++.+...
T Consensus 190 gsvV~~d 196 (231)
T TIGR03532 190 GAIVTED 196 (231)
T ss_pred CCEEccc
Confidence 9998654
No 139
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.77 E-value=3.7e-08 Score=85.63 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=61.7
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 297 ~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
.+++++.|++++.|. ++.||++++|+++|.|.+|+||+++.|+++|.+.+++||++|.|++++.|.++
T Consensus 4 ~~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~ 71 (204)
T TIGR03308 4 LLSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINAT 71 (204)
T ss_pred ccCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCC
Confidence 456777888888886 78999999999999999999999999999999999999999999999999765
No 140
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.77 E-value=4.9e-08 Score=77.48 Aligned_cols=41 Identities=29% Similarity=0.312 Sum_probs=22.6
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEec
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS 330 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~ 330 (372)
..+.++++|++++.|++++.|.+++.|+.++.||++|.|.+
T Consensus 5 ~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~ 45 (119)
T cd03358 5 CIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGP 45 (119)
T ss_pred CEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcC
Confidence 34445555555555555555555555555555555555553
No 141
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.76 E-value=5.8e-08 Score=87.32 Aligned_cols=52 Identities=25% Similarity=0.178 Sum_probs=23.2
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEE
Q 017417 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVT 346 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~ 346 (372)
++.|++++.|+++++|.+++.||++|.|++++.|. .+.||+++.|+++|+|.
T Consensus 29 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 29 NVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIH 93 (255)
T ss_pred CCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEe
Confidence 33334444444444444444444444444444442 23455555555555554
No 142
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=98.76 E-value=6e-08 Score=83.99 Aligned_cols=75 Identities=24% Similarity=0.395 Sum_probs=46.5
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcC
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (372)
..+.+++.|++++.|.+++.+.+++.||++|.|++++.|.++.|+++|.|++++.|.++++++++.|++++.|.+
T Consensus 10 ~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~ 84 (193)
T cd03353 10 TYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRP 84 (193)
T ss_pred EEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcC
Confidence 344455666666666666666666666666666666666666666666666666666666666666665555543
No 143
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.75 E-value=1.4e-07 Score=79.99 Aligned_cols=166 Identities=16% Similarity=0.160 Sum_probs=108.6
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCeeE
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPV 80 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i 80 (372)
++..|+|+|.| -++|. | .|-+.+++|+|||.|+|+++.+ |+|.+. .+.|.+....+ +.++
T Consensus 2 ~~~iAiIpAR~--gSKgI-~-----~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsD--s~~Il~~A~~y----gak~ 67 (228)
T COG1083 2 MKNIAIIPARG--GSKGI-K-----NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSD--SEEILEEAKKY----GAKV 67 (228)
T ss_pred cceEEEEeccC--CCCcC-C-----ccchHHhCCcchHHHHHHHHhcCCccceEEEcCC--cHHHHHHHHHh----Cccc
Confidence 46789999998 34444 4 6999999999999999999887 444442 34455554443 3444
Q ss_pred EEecCC----cccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCcccccceE
Q 017417 81 RYLRED----KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGE 154 (372)
Q Consensus 81 ~~~~~~----~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 154 (372)
.+.+.. ....+..+++.+.+....+. +.++.+.+-.++ ..++++.++.+.+.+.+..+.+.+... .+|..
T Consensus 68 ~~~Rp~~LA~D~ast~~~~lh~le~~~~~~-~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~---~p~k~ 143 (228)
T COG1083 68 FLKRPKELASDRASTIDAALHALESFNIDE-DTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEH---HPYKA 143 (228)
T ss_pred cccCChhhccCchhHHHHHHHHHHHhcccc-CeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeeccc---chHHH
Confidence 333321 12334466777777766542 468888888887 457999999999888877777777532 32322
Q ss_pred EEEcCCCCceeEeeecC-------CCcccCceeeeEEEeCHhhHH
Q 017417 155 LVADPDTNELLHYTEKP-------ETFVSDLINCGVYVFTPDIFN 192 (372)
Q Consensus 155 v~~~~~~~~v~~i~ek~-------~~~~~~~~~~Giy~~~~~~~~ 192 (372)
...+ +|.+..+.+.+ +-+.....+..+|++++..|.
T Consensus 144 f~~~--~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~ 186 (228)
T COG1083 144 FSLN--NGEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALL 186 (228)
T ss_pred HHhc--CCceeecccCCccccccccchhhhhhcCcEEEehHHHHh
Confidence 2222 36677776654 122344557788999987774
No 144
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.74 E-value=1.2e-07 Score=77.51 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=11.3
Q ss_pred EECCCcEEE-ceEECCCCEECCCcEEcC
Q 017417 338 EIMENAVVT-NAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 338 ~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 364 (372)
+|+++|.|. ++.|.+++.|++++.|.+
T Consensus 77 ~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~ 104 (139)
T cd03350 77 IIEDDVFIGANCEVVEGVIVGKGAVLAA 104 (139)
T ss_pred EECCCCEECCCCEECCCCEECCCCEEcC
Confidence 333444443 444444444444444443
No 145
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2.5e-08 Score=91.23 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=64.3
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcC
Q 017417 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (372)
...+||++|.|++.++|. +|+|-++++||+|+.|.+|+|++++.||++|.+.+|+|+.+-+|.+..+..+
T Consensus 350 k~SviG~nC~Ig~~~~v~-nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yvVeak~~~~~ 419 (433)
T KOG1462|consen 350 KRSVIGSNCDIGERVKVA-NSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYVVEAKGKHGG 419 (433)
T ss_pred eeeeecCCccccCCcEEE-eeEeecCcEecCCcceecceecccceecCCCeeeeeEecCCcEEcccccccc
Confidence 457899999999999998 9999999999999999999999999999999999999999999986655443
No 146
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.74 E-value=9.1e-08 Score=82.51 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=34.5
Q ss_pred EcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcC
Q 017417 292 IIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 292 ~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 364 (372)
+.+++.+++++.|+++++|.+++.||++|.|++++.|. +|.|+++|.|+.+|.+. ++.|++++.||.++.+.+
T Consensus 93 i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 167 (197)
T cd03360 93 VSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQ 167 (197)
T ss_pred ECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcC
Confidence 33444445555555444444444455555554444442 34444444444444444 344444444444444443
No 147
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.74 E-value=1.1e-07 Score=79.87 Aligned_cols=71 Identities=20% Similarity=0.127 Sum_probs=55.4
Q ss_pred cEECCCCEECCCCEECC------------CcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEE
Q 017417 296 VYVHPSAKIHPTAKIGP------------NVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRV 362 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~~------------~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 362 (372)
+.||+++.|+++++|.+ ++.||+++.|++++.+.++.|++++.|++++.|. ++.|++++.|++++.+
T Consensus 43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V 122 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVV 122 (161)
T ss_pred eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEE
Confidence 56777777777777653 3578889999999888888888888888888887 7888888888888777
Q ss_pred cCCC
Q 017417 363 QASS 366 (372)
Q Consensus 363 ~~~~ 366 (372)
.++.
T Consensus 123 ~~~~ 126 (161)
T cd03359 123 PPDT 126 (161)
T ss_pred CCCC
Confidence 6663
No 148
>PLN02694 serine O-acetyltransferase
Probab=98.73 E-value=2.8e-08 Score=89.33 Aligned_cols=77 Identities=26% Similarity=0.165 Sum_probs=60.7
Q ss_pred CcEEcCCcEECCCCEECC--CCEECCCcEECCCCEECCCcEEe---------ceEECCCCEECCCcEEE-ceEECCCCEE
Q 017417 289 NATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLI---------SCIILDGVEIMENAVVT-NAIVGWKSSI 356 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~--~~~i~~~s~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (372)
...+.+.+.||+++.|.. +++|+++++||++|.|..++++. +++|+++|.||.+|+|. ++.||+++.|
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~I 239 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKI 239 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEE
Confidence 345666777777777765 67777777777777777777774 47999999999999995 8999999999
Q ss_pred CCCcEEcCC
Q 017417 357 GRWSRVQAS 365 (372)
Q Consensus 357 ~~~~~i~~~ 365 (372)
|.++.|...
T Consensus 240 GAgSVV~kd 248 (294)
T PLN02694 240 GAGSVVLID 248 (294)
T ss_pred CCCCEECCc
Confidence 999998743
No 149
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.73 E-value=8.6e-08 Score=80.42 Aligned_cols=71 Identities=25% Similarity=0.238 Sum_probs=55.5
Q ss_pred CcEECCCCEECCCCEECCC---cEECCCCEECCCcEEec-------------eEECCCCEECCCcEEEceEECCCCEECC
Q 017417 295 DVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLIS-------------CIILDGVEIMENAVVTNAIVGWKSSIGR 358 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~---s~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~~~i~~~~~i~~ 358 (372)
++.+++++.|++++.+.+. +.||++|.|+++++|.+ +.|++++.|+++|.+.++.|++++.|++
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~ 100 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGK 100 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECC
Confidence 5677777777777777754 58888888888888864 4799999999999988888887777777
Q ss_pred CcEEcCC
Q 017417 359 WSRVQAS 365 (372)
Q Consensus 359 ~~~i~~~ 365 (372)
++.|..+
T Consensus 101 ~~~Ig~~ 107 (161)
T cd03359 101 NCVIGRR 107 (161)
T ss_pred CCEEcCC
Confidence 7776554
No 150
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.73 E-value=7e-08 Score=81.13 Aligned_cols=77 Identities=23% Similarity=0.249 Sum_probs=57.1
Q ss_pred CcEEcCCcEECCCCEECCCCEEC---CCcEECCCCEECCCcEEec-----------eEECCCCEECCCcEEEceEECCCC
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIG---PNVSISANARIGAGVRLIS-----------CIILDGVEIMENAVVTNAIVGWKS 354 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~---~~s~ig~~~~i~~~~~i~~-----------~~i~~~~~i~~~~~i~~~~i~~~~ 354 (372)
.+.+.+++.||+++.|++++.+. ++++||++|.|+++++|.+ ++||+++.+..++.+.+++||+++
T Consensus 11 ~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~ 90 (164)
T cd04646 11 ESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNN 90 (164)
T ss_pred CCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCC
Confidence 45566778888888888888884 3578888888888888864 457777777777777777777777
Q ss_pred EECCCcEEcCC
Q 017417 355 SIGRWSRVQAS 365 (372)
Q Consensus 355 ~i~~~~~i~~~ 365 (372)
.||.++.|.++
T Consensus 91 ~Ig~~a~I~~g 101 (164)
T cd04646 91 VFESKSFVGKN 101 (164)
T ss_pred EEeCCCEECCC
Confidence 77776666554
No 151
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.73 E-value=1.2e-07 Score=78.92 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=64.4
Q ss_pred cEECCCCEECCCCEECC----CcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcCCCC
Q 017417 296 VYVHPSAKIHPTAKIGP----NVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQASSK 367 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~~----~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~ 367 (372)
+.|++++.|++++.|.. +++||+++.|+.++++.+++|+++|.|+.++.+. ++.|++++.++.++.+.++.+
T Consensus 40 i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~ 116 (154)
T cd04650 40 IYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKE 116 (154)
T ss_pred EEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcE
Confidence 68888888888888864 4899999999999999999999999999999997 899999999999999987643
No 152
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.72 E-value=6.6e-08 Score=91.27 Aligned_cols=76 Identities=29% Similarity=0.329 Sum_probs=52.5
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEec-eEECCCCEECCCcEEE--------------------ce
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVVT--------------------NA 348 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~--------------------~~ 348 (372)
..+.+++.||+++.|+++++|.+++.||++|.|+++++|.+ +.|+++|+|+++|+|. ++
T Consensus 125 ~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v 204 (343)
T PRK00892 125 AVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRV 204 (343)
T ss_pred eEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccE
Confidence 44455556666666666666666666666777777776653 5688888888888884 47
Q ss_pred EECCCCEECCCcEEcCC
Q 017417 349 IVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 349 ~i~~~~~i~~~~~i~~~ 365 (372)
+|++++.||+++.|..+
T Consensus 205 ~Ig~~v~IGa~~~I~~~ 221 (343)
T PRK00892 205 IIGDDVEIGANTTIDRG 221 (343)
T ss_pred EECCCcEECCCcEEecC
Confidence 78888888888887655
No 153
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.72 E-value=9e-08 Score=86.51 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=54.5
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC------------CcEECCCCEECCCcEEe--------ceEECCCCEECCCcEEE-
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGP------------NVSISANARIGAGVRLI--------SCIILDGVEIMENAVVT- 346 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~------------~s~ig~~~~i~~~~~i~--------~~~i~~~~~i~~~~~i~- 346 (372)
+.+.+.+++.||+++.|++++++++ ++.||++|.|++++.|. +++||++++|+++++|.
T Consensus 39 ~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~ 118 (254)
T TIGR01852 39 SHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAH 118 (254)
T ss_pred CCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEcc
Confidence 4455667778888888888888863 57788888888888885 45777777777777774
Q ss_pred ceEECCCCEECCCcEEcC
Q 017417 347 NAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 347 ~~~i~~~~~i~~~~~i~~ 364 (372)
++.|++++.|+.++.+.+
T Consensus 119 ~~~Ig~~~~i~~~~~i~~ 136 (254)
T TIGR01852 119 DCVVGNHVILANNATLAG 136 (254)
T ss_pred CCEECCCCEECCCCEECC
Confidence 666666666666655544
No 154
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.71 E-value=1.1e-07 Score=79.11 Aligned_cols=78 Identities=27% Similarity=0.316 Sum_probs=68.0
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCC---cEECCCCEECCCcEEec-----eEECCCCEECCCcEEEceEECCCCEECCC
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLIS-----CIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~~---s~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (372)
+.+.+.+++.+++++.|++++.|.++ ++||++|.|+++++|.. ++|++++.|+.+|.|.+++|++++.|+.+
T Consensus 10 ~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~ 89 (153)
T cd04645 10 PNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMG 89 (153)
T ss_pred CCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCC
Confidence 35667778899999999999988743 69999999999999987 59999999999999999999999999988
Q ss_pred cEEcCC
Q 017417 360 SRVQAS 365 (372)
Q Consensus 360 ~~i~~~ 365 (372)
+.+.++
T Consensus 90 ~~v~~~ 95 (153)
T cd04645 90 AIILDG 95 (153)
T ss_pred CEEcCC
Confidence 888754
No 155
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.71 E-value=1.3e-07 Score=72.62 Aligned_cols=63 Identities=27% Similarity=0.327 Sum_probs=43.0
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEEceEECCCCEECC
Q 017417 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGR 358 (372)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~ 358 (372)
+++++++++.|++++.+.++++||++|.|++++.|. +++|+++|.|+. .|.+|+|++++.+++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~ 73 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQH 73 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecC
Confidence 457788888888888887778888888888888776 377777777762 334444444444333
No 156
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.70 E-value=9.5e-08 Score=85.92 Aligned_cols=77 Identities=25% Similarity=0.167 Sum_probs=58.0
Q ss_pred CCcEEcCCcEECCCCEECC--CCEECCCcEECCCCEECCCcEEe---------ceEECCCCEECCCcEEE-ceEECCCCE
Q 017417 288 KNATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLI---------SCIILDGVEIMENAVVT-NAIVGWKSS 355 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~--~~~i~~~s~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~ 355 (372)
.+..+.+.+.||+++.|+. +.+|+.++.||++|.|..+++|. .++|+++|.||.+|+|. ++.||+++.
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~ 219 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAK 219 (273)
T ss_pred eeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCE
Confidence 3455666667777777663 45666677777777777777775 25889999999999988 889999999
Q ss_pred ECCCcEEcC
Q 017417 356 IGRWSRVQA 364 (372)
Q Consensus 356 i~~~~~i~~ 364 (372)
||+++.+..
T Consensus 220 IGAgSvV~~ 228 (273)
T PRK11132 220 IGAGSVVLQ 228 (273)
T ss_pred ECCCCEECc
Confidence 999998764
No 157
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.70 E-value=5.7e-09 Score=94.48 Aligned_cols=59 Identities=24% Similarity=0.331 Sum_probs=48.2
Q ss_pred eEEEEeCCCCCCCccccCcccCCCCCcccC---CcchhhhhHhhcce-------------EEEEcccchHHHHHHHhhcc
Q 017417 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR-------------IYLVGFYEEREFALYVSSIS 73 (372)
Q Consensus 10 ~~vIlAaG~~~g~R~~~lt~~~pK~llpv~---g~pli~~~l~~l~~-------------i~vv~~~~~~~i~~~~~~~~ 73 (372)
.+|||||| .||||+ .+.||+|+||+ |+|++++.++++.. ++++..+..+.+.+++++..
T Consensus 2 a~viLaGG--~GtRLg---~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 2 AVVLLAGG--LGTRLG---KDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred EEEEECCC--CccccC---CCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 58999999 999996 48899999999 99999999998742 44445556667889998754
No 158
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.69 E-value=1.9e-07 Score=81.05 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=50.7
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcCC
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (372)
+.+.+++.|++++.|+++++|++++.||++|.|+.++.|. +|.|++++.|+.++.+. ++.+++++.|+.++.+.++
T Consensus 94 a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~ 171 (201)
T TIGR03570 94 AIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQG 171 (201)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCC
Confidence 4455566677777777777776667777777777676665 46777777777666666 5666666666666666543
No 159
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.69 E-value=1e-07 Score=85.60 Aligned_cols=71 Identities=25% Similarity=0.269 Sum_probs=47.8
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCcEEe---------ceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcC
Q 017417 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI---------SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 364 (372)
++.|++++.|++++.|++++.||++|.|+.++.|. +++|+++|.||.+|+|. ++.|+++++|+.++.|.+
T Consensus 132 Ga~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~ 211 (272)
T PRK11830 132 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQ 211 (272)
T ss_pred CCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence 34555555555555665556666666666666554 47888888888888775 777777777777777765
Q ss_pred C
Q 017417 365 S 365 (372)
Q Consensus 365 ~ 365 (372)
+
T Consensus 212 g 212 (272)
T PRK11830 212 S 212 (272)
T ss_pred C
Confidence 3
No 160
>PRK10191 putative acyl transferase; Provisional
Probab=98.69 E-value=1.4e-07 Score=77.13 Aligned_cols=73 Identities=25% Similarity=0.265 Sum_probs=49.5
Q ss_pred cCCcEECCCCEECC--CCEECCCcEECCCCEECCCcEEe--------ceEECCCCEECCCcEEE-ceEECCCCEECCCcE
Q 017417 293 IGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLI--------SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSR 361 (372)
Q Consensus 293 ~~~~~i~~~~~i~~--~~~i~~~s~ig~~~~i~~~~~i~--------~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~ 361 (372)
.+.+.+++++.|++ ++.+++++.||++|.|+.+++|. .+.||++|.|+.++.+. ++.|++++.|++++.
T Consensus 45 ~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~ 124 (146)
T PRK10191 45 QAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGSV 124 (146)
T ss_pred CCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCE
Confidence 33444445555544 34555555555555555555553 25899999999999998 799999999999998
Q ss_pred EcCC
Q 017417 362 VQAS 365 (372)
Q Consensus 362 i~~~ 365 (372)
+...
T Consensus 125 V~~d 128 (146)
T PRK10191 125 VLDS 128 (146)
T ss_pred ECCc
Confidence 8754
No 161
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.68 E-value=1e-07 Score=86.40 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=66.1
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE-------------ceEECCC
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-------------NAIVGWK 353 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~~~ 353 (372)
+.+.+.+.+.|++++.|++++.+.+++.||++|.|++++.|. +++||++|.|+++++|. .+.||++
T Consensus 7 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~ 86 (262)
T PRK05289 7 PTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDN 86 (262)
T ss_pred CCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCC
Confidence 445667777888888888888888888888888888888887 58999999999999996 4889999
Q ss_pred CEECCCcEEcCCC
Q 017417 354 SSIGRWSRVQASS 366 (372)
Q Consensus 354 ~~i~~~~~i~~~~ 366 (372)
+.|++++.|+.+.
T Consensus 87 ~~I~e~~~I~~~~ 99 (262)
T PRK05289 87 NTIREFVTINRGT 99 (262)
T ss_pred CEECCCeEEeccc
Confidence 9999999998753
No 162
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.68 E-value=9.9e-08 Score=90.07 Aligned_cols=76 Identities=22% Similarity=0.234 Sum_probs=56.6
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE-ceEECCCCEECCCcEEc
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (372)
+.+.+.+++.+++++.|+++++|++++.||++|.|++++.|. ++.||++|.|+++|+|. ++.|+++|.|++++.|.
T Consensus 105 ~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig 182 (343)
T PRK00892 105 PSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIG 182 (343)
T ss_pred CCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEe
Confidence 445666677777777777777777777777777777777775 57777888888788777 56678888888877775
No 163
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.67 E-value=6e-08 Score=95.25 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=58.4
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEc
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (372)
+.+.+.+++.||+++.|++++.|. ++.||++|.|++++.|.+|+|+++|.|+++|.|. +++|+++|.|+.++.+.
T Consensus 272 ~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~ 347 (451)
T TIGR01173 272 PNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETK 347 (451)
T ss_pred CCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeec
Confidence 445666677888888888888886 7888888888888888888888888888888887 67777777777666543
No 164
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.67 E-value=1.9e-07 Score=81.21 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=21.8
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcE
Q 017417 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAV 344 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~ 344 (372)
+.||+++.|++++.+. +++||+++.|+.++.|.+++||++|.|++++.
T Consensus 20 ~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~ 67 (204)
T TIGR03308 20 SKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVR 67 (204)
T ss_pred cEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCE
Confidence 4455555555544444 44444444444444444444444444444433
No 165
>PLN02357 serine acetyltransferase
Probab=98.67 E-value=1.3e-07 Score=87.48 Aligned_cols=76 Identities=24% Similarity=0.180 Sum_probs=56.4
Q ss_pred cEEcCCcEECCCCEECC--CCEECCCcEECCCCEECCCcEEe---------ceEECCCCEECCCcEEE-ceEECCCCEEC
Q 017417 290 ATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLI---------SCIILDGVEIMENAVVT-NAIVGWKSSIG 357 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~--~~~i~~~s~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~i~ 357 (372)
..+++.+.||+++.|.+ +++|+++++||++|.|+.+++|. +++||++|.||.++.|. ++.||+++.||
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IG 306 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIG 306 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEEC
Confidence 45566666777776664 56666667777777777777664 37888889998888886 88889999999
Q ss_pred CCcEEcCC
Q 017417 358 RWSRVQAS 365 (372)
Q Consensus 358 ~~~~i~~~ 365 (372)
.++.|...
T Consensus 307 AgSVV~~d 314 (360)
T PLN02357 307 AGSVVLKD 314 (360)
T ss_pred CCCEECcc
Confidence 98887643
No 166
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.66 E-value=3.7e-07 Score=73.59 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=57.8
Q ss_pred CcEEcCCcEECCCCEECCCCEEC----CCcEECCCCEECCCcEEe-----c----eEECCCCEECCCcEEEceEECCCCE
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIG----PNVSISANARIGAGVRLI-----S----CIILDGVEIMENAVVTNAIVGWKSS 355 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~----~~s~ig~~~~i~~~~~i~-----~----~~i~~~~~i~~~~~i~~~~i~~~~~ 355 (372)
.+.+...+++..++.|+.++++. .++.||.+|.||+++.|. + +.|+++|.||.++.| +..|++++.
T Consensus 19 GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG~ga~I-gv~IG~~~v 97 (147)
T cd04649 19 GTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGI-GISLGDNCI 97 (147)
T ss_pred CcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEECCCCEE-eEEECCCCE
Confidence 45555666777777777777776 667788888888887774 2 788888888888888 788888888
Q ss_pred ECCCcEEcCC
Q 017417 356 IGRWSRVQAS 365 (372)
Q Consensus 356 i~~~~~i~~~ 365 (372)
||.++.+..+
T Consensus 98 IGaGsvV~k~ 107 (147)
T cd04649 98 VEAGLYVTAG 107 (147)
T ss_pred ECCCCEEeCC
Confidence 9888877543
No 167
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.66 E-value=1.7e-07 Score=80.80 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=62.1
Q ss_pred cEECCCCEECCCCEECC----CcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcCCC
Q 017417 296 VYVHPSAKIHPTAKIGP----NVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQASS 366 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~~----~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 366 (372)
+.|++++.|+++|+|.. +++|++++.||.++.+.+|+|+++|.||.++++. ++.|++++.|++++.+..+-
T Consensus 50 i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~ 125 (196)
T PRK13627 50 LIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGF 125 (196)
T ss_pred EEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCc
Confidence 46777777777777754 5889999999999999999999999999999998 79999999999999988764
No 168
>PLN02739 serine acetyltransferase
Probab=98.65 E-value=1.2e-07 Score=87.03 Aligned_cols=76 Identities=20% Similarity=0.118 Sum_probs=62.5
Q ss_pred CcEEcCCcEECCCCEECC--CCEECCCcEECCCCEECCCcEEe---------ceEECCCCEECCCcEEE-ceEECCCCEE
Q 017417 289 NATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLI---------SCIILDGVEIMENAVVT-NAIVGWKSSI 356 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~--~~~i~~~s~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (372)
+..+++.+.||+++.|.. +++|+++++||++|.|..+++|. .+.||++|.||.|++|. ++.||+++.|
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiI 284 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMV 284 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEE
Confidence 455666777888888854 78888888888888888888884 47899999999999998 8999999999
Q ss_pred CCCcEEcC
Q 017417 357 GRWSRVQA 364 (372)
Q Consensus 357 ~~~~~i~~ 364 (372)
|+|+.|..
T Consensus 285 GAGSVV~k 292 (355)
T PLN02739 285 AAGSLVLK 292 (355)
T ss_pred CCCCEECC
Confidence 99998864
No 169
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.64 E-value=2.7e-07 Score=77.84 Aligned_cols=72 Identities=18% Similarity=0.112 Sum_probs=57.6
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
.++.|++++.|++++.+.+.+.||++|.||.++.|.++.|+++|.|+.++.|.++.|+++..++.++.+...
T Consensus 63 ~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~v~~~ 134 (167)
T cd00710 63 YSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDGVEIPPGRYVPAGAVITSQ 134 (167)
T ss_pred CCEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeCCEeCCCCEECCCCEEcCC
Confidence 356777788888888887778888888888888888888888888888888887788888888888877644
No 170
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.64 E-value=2.1e-07 Score=82.90 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=29.0
Q ss_pred EECCCCEECCCcEECCCCEECCCcEEe-ceEEC--------CCCEECCCcEEE-ceEECCCCEECCCcEEcCC
Q 017417 303 KIHPTAKIGPNVSISANARIGAGVRLI-SCIIL--------DGVEIMENAVVT-NAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 303 ~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~--------~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (372)
.|+++++|..++.||.+|.||++|.|. ++.|+ .+++|+++|.|. +|.|.+++.||+++.|..+
T Consensus 131 ~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaG 203 (269)
T TIGR00965 131 YVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMG 203 (269)
T ss_pred EECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCC
Confidence 344444444444444444444444443 23332 334455555555 4555555555555555444
No 171
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.64 E-value=1.3e-07 Score=93.17 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=60.8
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcE
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSR 361 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~ 361 (372)
+.+.+.++++||+++.|+++++|. +|+||++|+|+++++|.+|+|++++.|++++++. ++.|++++.||.++.
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ 352 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVE 352 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCcc
Confidence 455667778888888888888886 8999999999999999999999999999888887 777777777666554
No 172
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.63 E-value=7e-08 Score=94.95 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=56.3
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEE
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRV 362 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 362 (372)
..+.+++.||+++.|++++.|. +|+||++|.|++++.|.+|+|+++|.|++++.|. ++.|++++.||.++.+
T Consensus 282 ~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i 354 (456)
T PRK14356 282 CEIYGASRIARGAVIHSHCWLR-DAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEM 354 (456)
T ss_pred cEEeCceEECCCCEECCCeEEE-eeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCcee
Confidence 3455667888888888888886 7888888888888888888888888888888887 7777777777776654
No 173
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.63 E-value=1e-07 Score=93.79 Aligned_cols=75 Identities=29% Similarity=0.477 Sum_probs=68.7
Q ss_pred EcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCCC
Q 017417 292 IIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQASS 366 (372)
Q Consensus 292 ~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 366 (372)
+.+++.+++++.|++++.|.++++||++|.|+++|.|.+|+|+++|.|+++|.|++|+|++++.|++++.|.+++
T Consensus 262 ~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~ 336 (456)
T PRK09451 262 LRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGA 336 (456)
T ss_pred ECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCC
Confidence 456788999999999999998999999999999999999999999999999999999999999999999887654
No 174
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.63 E-value=2.5e-07 Score=78.07 Aligned_cols=70 Identities=27% Similarity=0.226 Sum_probs=55.6
Q ss_pred CcEECCCCEECCCCEEC----CCcEECCCCEECCCcEEec-eEECCCCEECCCcEEEceEECCCCEECCCcEEcC
Q 017417 295 DVYVHPSAKIHPTAKIG----PNVSISANARIGAGVRLIS-CIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~----~~s~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (372)
.+.|++++.|++++++. ..+.||++|.|+.++.|.+ ++|+++|.|+.+|.|.++.|++++.||.++.|.+
T Consensus 42 ~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~ 116 (167)
T cd00710 42 PIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDG 116 (167)
T ss_pred cEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeC
Confidence 35677777777777762 3567788888888888875 8999999999999999999999999999888853
No 175
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.63 E-value=3.2e-07 Score=70.57 Aligned_cols=63 Identities=29% Similarity=0.246 Sum_probs=46.3
Q ss_pred EECCCCEECCCcEECCCCEECCCcE---EeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcCC
Q 017417 303 KIHPTAKIGPNVSISANARIGAGVR---LISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 303 ~i~~~~~i~~~s~ig~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (372)
.|++++.|++++.|+.+++|+.++. +.+++|+++|.|+.++.+. .+.|++++.|++++.|.+.
T Consensus 24 ~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~ 90 (101)
T cd03354 24 VIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTKD 90 (101)
T ss_pred EECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECcc
Confidence 4444455555555555555555553 4567899999999999999 5999999999999999865
No 176
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.62 E-value=4.9e-07 Score=72.89 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=38.4
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEE-eceEECCCCEECCCcEEEc---------eEECCCCEECCCc
Q 017417 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL-ISCIILDGVEIMENAVVTN---------AIVGWKSSIGRWS 360 (372)
Q Consensus 291 ~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~~---------~~i~~~~~i~~~~ 360 (372)
.+...+.|++++.|.+++.+..++.||++|.|.. +| .++.|+++|.|+++|.|.. +.|++++.||.++
T Consensus 9 ~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG~ga 86 (147)
T cd04649 9 RVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANS 86 (147)
T ss_pred EECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEECCCC
Confidence 3344455555555555555555555555555431 12 1477888888888888772 4455555555555
Q ss_pred EE
Q 017417 361 RV 362 (372)
Q Consensus 361 ~i 362 (372)
.|
T Consensus 87 ~I 88 (147)
T cd04649 87 GI 88 (147)
T ss_pred EE
Confidence 44
No 177
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.62 E-value=1.9e-07 Score=91.53 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=28.8
Q ss_pred CcEECCCCEECCCcEEe-ceEECCCCEECCCcEEEceEECCCC
Q 017417 313 NVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKS 354 (372)
Q Consensus 313 ~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~ 354 (372)
+++||++|+||+++.|. +|.||++|.|+++|.+.+++|++++
T Consensus 303 ~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~ 345 (446)
T PRK14353 303 GAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGA 345 (446)
T ss_pred ccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCC
Confidence 56777777777777776 6777777777777766655555443
No 178
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.61 E-value=2.8e-07 Score=71.80 Aligned_cols=67 Identities=27% Similarity=0.327 Sum_probs=42.6
Q ss_pred EECCCCEECCCCEECC--CcEECCCCEECCCcEE--------------------eceEECCCCEECCCcEEE-ceEECCC
Q 017417 297 YVHPSAKIHPTAKIGP--NVSISANARIGAGVRL--------------------ISCIILDGVEIMENAVVT-NAIVGWK 353 (372)
Q Consensus 297 ~i~~~~~i~~~~~i~~--~s~ig~~~~i~~~~~i--------------------~~~~i~~~~~i~~~~~i~-~~~i~~~ 353 (372)
.|++++.|++++.+.+ ++.||++|.|+++|.| .+++|+++|.|++++.+. ++.|+++
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~ 82 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDG 82 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCC
Confidence 4455555555555544 4555555555555555 346677777777777775 7777788
Q ss_pred CEECCCcEEc
Q 017417 354 SSIGRWSRVQ 363 (372)
Q Consensus 354 ~~i~~~~~i~ 363 (372)
+.|+.++.+.
T Consensus 83 ~~i~~~~~v~ 92 (109)
T cd04647 83 AVVGAGSVVT 92 (109)
T ss_pred CEECCCCEEe
Confidence 8887777776
No 179
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.58 E-value=3e-07 Score=82.75 Aligned_cols=77 Identities=25% Similarity=0.270 Sum_probs=65.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE-------------ceEECCCC
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-------------NAIVGWKS 354 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~~~~ 354 (372)
.+.+.+++.|++++.|++++.+.+++.||++|.|++++.|. ++.||+++.|+++++|. ...||+++
T Consensus 5 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~ 84 (255)
T PRK12461 5 TAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRN 84 (255)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCce
Confidence 45677778888888888888888888888888888888887 68999999999999886 47899999
Q ss_pred EECCCcEEcCC
Q 017417 355 SIGRWSRVQAS 365 (372)
Q Consensus 355 ~i~~~~~i~~~ 365 (372)
.|++++.|+.+
T Consensus 85 ~I~e~vtI~~g 95 (255)
T PRK12461 85 VIREGVTIHRG 95 (255)
T ss_pred EECCccEEecC
Confidence 99999999865
No 180
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.58 E-value=4.9e-07 Score=70.30 Aligned_cols=69 Identities=25% Similarity=0.252 Sum_probs=49.9
Q ss_pred cEECCCCEECCCCEEC--CCcEECCCCEECCCcEEe----------------ceEECCCCEECCCcEEE-ceEECCCCEE
Q 017417 296 VYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLI----------------SCIILDGVEIMENAVVT-NAIVGWKSSI 356 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~--~~s~ig~~~~i~~~~~i~----------------~~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (372)
..||+++.|+++++|. +...||++|.|++++.|. ++.|+++|.|+.++.|. ++.|++++.|
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i 83 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVV 83 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCEE
Confidence 4566666666666664 356777777777777662 46788888888888887 7888888888
Q ss_pred CCCcEEcC
Q 017417 357 GRWSRVQA 364 (372)
Q Consensus 357 ~~~~~i~~ 364 (372)
++++.+..
T Consensus 84 ~~gs~v~~ 91 (107)
T cd05825 84 GARSVVVR 91 (107)
T ss_pred CCCCEEeC
Confidence 88888764
No 181
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.58 E-value=5.3e-07 Score=78.82 Aligned_cols=52 Identities=33% Similarity=0.430 Sum_probs=22.6
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCcEEec-eEECCCCEECCCcEE
Q 017417 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVV 345 (372)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i 345 (372)
+++.|++++.|++++.|.+++.||++|.|++++.|.. ++|+++|.|+++++|
T Consensus 18 ~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 18 EGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 3344444444444444444444444444444444432 444444444444444
No 182
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=1.8e-07 Score=86.81 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=81.2
Q ss_pred CccccccchHHHHhhccccCCc-cccCCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCC
Q 017417 258 TPGMSLKCSGLYLAQFRLTSPN-LLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDG 336 (372)
Q Consensus 258 t~~d~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~ 336 (372)
.|.|.=....+|.++|..+++. .+.- ..+.+.+.......|++++..++.+. +|.|+.+|.|.. +|.+|+|+.+
T Consensus 243 Yw~dVgTi~syy~aNmdLl~~~~~~~l--yd~~w~IyT~~~~~pPak~~~~s~v~-nSLv~~GciI~G--~V~nSVL~~~ 317 (393)
T COG0448 243 YWRDVGTIDSYYEANMDLLSPQPELNL--YDRNWPIYTKNKNLPPAKFVNDSEVS-NSLVAGGCIISG--TVENSVLFRG 317 (393)
T ss_pred hhhhcccHHHHHHhhHHhcCCCCcccc--cCCCCceeecCCCCCCceEecCceEe-eeeeeCCeEEEe--EEEeeEEecC
Confidence 4445445556777777666522 1111 12456677777788999999999987 999999999965 8999999999
Q ss_pred CEECCCcEEEceEECCCCEECCCcEEcC
Q 017417 337 VEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 337 ~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (372)
++|+++|+|++|+|..+|.||.||.|+.
T Consensus 318 v~I~~gs~i~~svim~~~~IG~~~~l~~ 345 (393)
T COG0448 318 VRIGKGSVIENSVIMPDVEIGEGAVLRR 345 (393)
T ss_pred eEECCCCEEEeeEEeCCcEECCCCEEEE
Confidence 9999999999999999999999999864
No 183
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=9e-08 Score=89.05 Aligned_cols=75 Identities=23% Similarity=0.285 Sum_probs=57.1
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEc
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (372)
+...+.+.+.||.++.|+++|.|. +|.||+++.|...+.|.+|.|+++|.||+.+.|+ ++.+++++.||..+.++
T Consensus 279 p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK 354 (460)
T COG1207 279 PNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVK 354 (460)
T ss_pred cCcEEeeeEEECCceEECCCcEEE-eeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEe
Confidence 445556666777777777777776 7777878888777777888888888888888888 78888888888777664
No 184
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.56 E-value=2.1e-07 Score=89.34 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=55.1
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEc-----eEECCCCEECCCcEE
Q 017417 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTN-----AIVGWKSSIGRWSRV 362 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i 362 (372)
+++|+++|.|+++|.|. +|+|+++|+|+++|.|.+|+|+++++|+++|.+.+ ++||+++.|++++.|
T Consensus 308 ~s~ig~~~~I~~~~~i~-~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 308 HSVLFQGVQVGEGSVVK-DSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred ceEEcCCCEECCCCEEE-CCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence 46778888888888886 88888888888888888888888888888888886 778888888777665
No 185
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.54 E-value=2.9e-07 Score=90.93 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=57.7
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEE
Q 017417 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRV 362 (372)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 362 (372)
+.+.+.+++.|++++.|+++|+|. +|+||++|.|++++.|.+++|++++.|++++.+. +++|++++.|++++.|
T Consensus 281 ~~~~I~~~v~Ig~~~~I~~~~~i~-~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i 355 (481)
T PRK14358 281 PGVLLRGQTRVADGVTIGAYSVVT-DSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355 (481)
T ss_pred CCcEEeCCcEECCCCEECCCCEEe-eeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence 445666677778888888888885 7888888888888888888888888888888886 7777777777776554
No 186
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.52 E-value=2.7e-07 Score=79.38 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=47.2
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE-------------ceEECCCCEE
Q 017417 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-------------NAIVGWKSSI 356 (372)
Q Consensus 291 ~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~~~~~i 356 (372)
.+.+.+.|+++++|+|.|+|++++.||++++|+++++|. .+.||+++.|-+.+.|. ..+||+++.|
T Consensus 11 iIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~I 90 (260)
T COG1043 11 IIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTI 90 (260)
T ss_pred eeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeE
Confidence 334444444455555555555555555555555555554 46777777777777764 2788888888
Q ss_pred CCCcEEcCCC
Q 017417 357 GRWSRVQASS 366 (372)
Q Consensus 357 ~~~~~i~~~~ 366 (372)
-.+++|+.|.
T Consensus 91 RE~vTi~~GT 100 (260)
T COG1043 91 REFVTIHRGT 100 (260)
T ss_pred eeEEEEeccc
Confidence 8888888664
No 187
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.52 E-value=1.9e-07 Score=91.78 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=21.2
Q ss_pred cEECCCCEECCCcEEe-ceEECCCCEECCCcEEEceEECC
Q 017417 314 VSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGW 352 (372)
Q Consensus 314 s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~ 352 (372)
|+||++|.|++++.|. +|+|+++|+|++++.|.+++|++
T Consensus 314 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~ 353 (450)
T PRK14360 314 SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGE 353 (450)
T ss_pred ccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCC
Confidence 4445555555555555 46666666666555554444433
No 188
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.52 E-value=7e-07 Score=75.52 Aligned_cols=73 Identities=23% Similarity=0.191 Sum_probs=56.4
Q ss_pred cCCcEECCCCEECCCCEEC--CCcEECCCCEECCCcEEe-------------------ceEECCCCEECCCcEEE-ceEE
Q 017417 293 IGDVYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLI-------------------SCIILDGVEIMENAVVT-NAIV 350 (372)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~--~~s~ig~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~-~~~i 350 (372)
..++.|++++.|++++.+. .+..||++|.|++++.|. ++.|+++|.|+.+|+|. ++.|
T Consensus 60 ~~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~I 139 (169)
T cd03357 60 GYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTI 139 (169)
T ss_pred CCcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEE
Confidence 3456777777777777664 356788888888888873 47888888888888887 8888
Q ss_pred CCCCEECCCcEEcCC
Q 017417 351 GWKSSIGRWSRVQAS 365 (372)
Q Consensus 351 ~~~~~i~~~~~i~~~ 365 (372)
++++.||.++.+.+.
T Consensus 140 g~~~~VgagavV~~~ 154 (169)
T cd03357 140 GDNSVIGAGSVVTKD 154 (169)
T ss_pred CCCCEECCCCEEccc
Confidence 888888888888754
No 189
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.52 E-value=8.1e-07 Score=75.84 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=52.2
Q ss_pred cCCcEECCCCEECCCCEECCCc--EECCCCEECCCcEEe-------------------ceEECCCCEECCCcEEE-ceEE
Q 017417 293 IGDVYVHPSAKIHPTAKIGPNV--SISANARIGAGVRLI-------------------SCIILDGVEIMENAVVT-NAIV 350 (372)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~~~s--~ig~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~-~~~i 350 (372)
..++.||+++.|..++++.+.+ .||++|.|++++.|. ++.|+++|.|+.+|+|. ++.|
T Consensus 71 g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~I 150 (183)
T PRK10092 71 GYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTI 150 (183)
T ss_pred cCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEE
Confidence 3456666666666666665443 788888888888873 36788888888888876 7888
Q ss_pred CCCCEECCCcEEcC
Q 017417 351 GWKSSIGRWSRVQA 364 (372)
Q Consensus 351 ~~~~~i~~~~~i~~ 364 (372)
|++++|+.++.+..
T Consensus 151 G~~~vIgagsvV~~ 164 (183)
T PRK10092 151 GDNVVVASGAVVTK 164 (183)
T ss_pred CCCCEECCCCEEcc
Confidence 88888888887754
No 190
>PRK10191 putative acyl transferase; Provisional
Probab=98.51 E-value=7.2e-07 Score=73.01 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=46.5
Q ss_pred cEEcCCcEECCCCEECCCCEECCC-------cEECCCCEECCCcEEe-ceEECCCCEECCCcEEEceEECCCCEECCCcE
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGPN-------VSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSR 361 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~~-------s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~ 361 (372)
..+.+++.||+++.|++++++++. +.||++|.||.++.|. ++.|++++.|+.++++.+.+-.....+|..++
T Consensus 62 i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~dv~~~~~v~G~pA~ 141 (146)
T PRK10191 62 VVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDSVPDNALVVGEKAR 141 (146)
T ss_pred EEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCccCCCcEEEccCcE
Confidence 444555666666666666666532 4667777777777776 47777777777777777665555566665555
Q ss_pred E
Q 017417 362 V 362 (372)
Q Consensus 362 i 362 (372)
+
T Consensus 142 ~ 142 (146)
T PRK10191 142 V 142 (146)
T ss_pred E
Confidence 4
No 191
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.51 E-value=6.9e-07 Score=80.41 Aligned_cols=74 Identities=24% Similarity=0.284 Sum_probs=37.7
Q ss_pred cCCcEECCCCEECCCCEECC--CcEECCCCEECCCcEEe-ceEECC--------CCEECCCcEEE-ceEECCCCEECCCc
Q 017417 293 IGDVYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLI-SCIILD--------GVEIMENAVVT-NAIVGWKSSIGRWS 360 (372)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~~--~s~ig~~~~i~~~~~i~-~~~i~~--------~~~i~~~~~i~-~~~i~~~~~i~~~~ 360 (372)
..++.|++++.|++++.|.. +.+||++|+||++|.|. ++.|+. .++||++|.|. +|.|..+++||+++
T Consensus 139 ~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a 218 (273)
T PRK11132 139 AFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGA 218 (273)
T ss_pred eeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCC
Confidence 34455555555555555542 34555555555555554 344442 23555555555 55555555555555
Q ss_pred EEcCCC
Q 017417 361 RVQASS 366 (372)
Q Consensus 361 ~i~~~~ 366 (372)
.|.+++
T Consensus 219 ~IGAgS 224 (273)
T PRK11132 219 KIGAGS 224 (273)
T ss_pred EECCCC
Confidence 555443
No 192
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.50 E-value=8.1e-07 Score=77.65 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=38.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE-ceEEC
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVG 351 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~ 351 (372)
...+.+.++|++++.|++++++.++++|+++++||+++.|. ++.|+++++|+++|.|. ++.|+
T Consensus 7 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~ 71 (205)
T cd03352 7 NVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIG 71 (205)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEc
Confidence 34455556666666666666666666666666666666664 46666666666666666 45553
No 193
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.50 E-value=6e-07 Score=85.56 Aligned_cols=67 Identities=15% Similarity=0.236 Sum_probs=59.2
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcC
Q 017417 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (372)
..+.+.+.+++++.+. +|+||++|.|+.+ +|.+|+|+++|+|+++|+|.+|+|++++.|+.++.|+.
T Consensus 278 ~~~~~~~~i~~~~~i~-~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~ 344 (361)
T TIGR02091 278 EFLPPAKFVDSDAQVV-DSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRN 344 (361)
T ss_pred CCCCCceEecCCCEEE-CCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEee
Confidence 3566778888888775 8999999999987 89999999999999999999999999999999888864
No 194
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.50 E-value=1.4e-05 Score=77.14 Aligned_cols=182 Identities=16% Similarity=0.211 Sum_probs=111.9
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCccc-CCcchhhhhHhhcce----------EEEEcc-cchHHHHHHHhhccC
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL-GGQPMVHHPISACKR----------IYLVGF-YEEREFALYVSSISN 74 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv-~g~pli~~~l~~l~~----------i~vv~~-~~~~~i~~~~~~~~~ 74 (372)
.++.+|.|||| .||||+- +.||.|+|+ .|+++++.+++++.. .++.++ ...+....+++.+.
T Consensus 78 ~k~avlkLnGG--lGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~- 151 (469)
T PLN02474 78 DKLVVLKLNGG--LGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYT- 151 (469)
T ss_pred hcEEEEEecCC--cccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcC-
Confidence 47889999999 9999997 789999999 567999998877644 456555 34556777887643
Q ss_pred CCCeeEEEecCC------------------------cccChHH---HHHHH--HHHhhccCCCeEEEEcCCeeecCChHH
Q 017417 75 ELRIPVRYLRED------------------------KPHGSAG---ALYNF--RDLIMEDNPSHIFLLNCDVCCSFPLPE 125 (372)
Q Consensus 75 ~~~~~i~~~~~~------------------------~~~g~~~---al~~~--~~~l~~~~~~~vlv~~gD~i~~~~l~~ 125 (372)
.....+.+..|. .+.|.++ |++.. ++.+..+.-+++.+.+.|.+...-=..
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~ 231 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH
Confidence 223333322110 1233332 23221 444544455799999999975433334
Q ss_pred HHHHHHhcCCceEEEEEecCCcccccceEEE-EcCCCCceeEeeecCCC--------cccCceeeeEEEeCHhhHHHhhh
Q 017417 126 MLDAHRNYGGMGTILVIKVSAESASQFGELV-ADPDTNELLHYTEKPET--------FVSDLINCGVYVFTPDIFNAIQG 196 (372)
Q Consensus 126 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~-~~~~~~~v~~i~ek~~~--------~~~~~~~~Giy~~~~~~~~~l~~ 196 (372)
++..+...++++++=+.+....+ ..-|.+. .+. .-++.++.+-|.+ ....+.+++.++|+-.+++.+.+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~~dg-k~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~~ 309 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLAD-VKGGTLISYEG-KVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCC-CCccEEEEECC-EEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHhh
Confidence 66667777777776655422111 2224333 221 2256666664421 13466789999999877777643
No 195
>PLN02694 serine O-acetyltransferase
Probab=98.50 E-value=5.8e-07 Score=80.97 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=36.1
Q ss_pred EcCCcEECCCCEECCCCEECC--------CcEECCCCEECCCcEE-eceEECCCCEECCCcEEEceEECCCCEECCCcEE
Q 017417 292 IIGDVYVHPSAKIHPTAKIGP--------NVSISANARIGAGVRL-ISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRV 362 (372)
Q Consensus 292 ~~~~~~i~~~~~i~~~~~i~~--------~s~ig~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 362 (372)
+..++.||+++.|..++++++ +++||++|.||.+++| .++.||++|+|+.+++|...+=...++.|.=+++
T Consensus 183 IGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kdVP~~~~v~G~PAki 262 (294)
T PLN02694 183 IGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLIDVPPRTTAVGNPARL 262 (294)
T ss_pred ECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECCcCCCCcEEEccCcEE
Confidence 333444444444444444431 2455666666666555 3566666666666666654433223334444444
Q ss_pred cC
Q 017417 363 QA 364 (372)
Q Consensus 363 ~~ 364 (372)
.+
T Consensus 263 v~ 264 (294)
T PLN02694 263 VG 264 (294)
T ss_pred Ec
Confidence 33
No 196
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.49 E-value=7e-06 Score=79.86 Aligned_cols=181 Identities=16% Similarity=0.250 Sum_probs=107.4
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCccc---CCcchhhhhHhhcce------------------EEEE-cccchHH
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR------------------IYLV-GFYEERE 64 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv---~g~pli~~~l~~l~~------------------i~vv-~~~~~~~ 64 (372)
.++.+|||||| .||||+. ..||+|+|| .|+|+++++++++.. ++|+ ..+..+.
T Consensus 105 gkvavViLAGG--~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~ 179 (482)
T PTZ00339 105 GEVAVLILAGG--LGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQ 179 (482)
T ss_pred CCeEEEEECCC--CcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHH
Confidence 46899999999 9999975 899999999 589999999887631 3444 4456677
Q ss_pred HHHHHhhccCCCCe---eEEEecCC----------------------cccChHHHHHH-----HHHHhhccCCCeEEEEc
Q 017417 65 FALYVSSISNELRI---PVRYLRED----------------------KPHGSAGALYN-----FRDLIMEDNPSHIFLLN 114 (372)
Q Consensus 65 i~~~~~~~~~~~~~---~i~~~~~~----------------------~~~g~~~al~~-----~~~~l~~~~~~~vlv~~ 114 (372)
+.+++++. ..+++ .|.+..|. .+.|.++-... .++.+....-+++.+..
T Consensus 180 t~~~f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~ 258 (482)
T PTZ00339 180 TRQFLEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVIS 258 (482)
T ss_pred HHHHHHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEe
Confidence 88888753 22221 12222111 13444433332 13444444457899999
Q ss_pred CCeeecCC-hHHHHHHHHhcCC-ceEEEEEecCCcccccceEEEEcCCCCceeEeeecC-------C----CcccCceee
Q 017417 115 CDVCCSFP-LPEMLDAHRNYGG-MGTILVIKVSAESASQFGELVADPDTNELLHYTEKP-------E----TFVSDLINC 181 (372)
Q Consensus 115 gD~i~~~~-l~~~l~~~~~~~~-~~~i~~~~~~~~~~~~~~~v~~~~~~~~v~~i~ek~-------~----~~~~~~~~~ 181 (372)
.|.+.... -..++-.+...+. +++-.+.+..+ ...-|.+......-.|..+.|-+ + ...-...++
T Consensus 259 vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI 336 (482)
T PTZ00339 259 IDNILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNI 336 (482)
T ss_pred cCcccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccce
Confidence 99996432 3334555555555 55443334322 23345554321122455665521 1 111245678
Q ss_pred eEEEeCHhhHHHhh
Q 017417 182 GVYVFTPDIFNAIQ 195 (372)
Q Consensus 182 Giy~~~~~~~~~l~ 195 (372)
..++|+-++++.+.
T Consensus 337 ~~h~fsl~fl~~~~ 350 (482)
T PTZ00339 337 CSHIFSLDFLKKVA 350 (482)
T ss_pred EEEEEEHHHHHHHh
Confidence 89999998888763
No 197
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.49 E-value=6.9e-07 Score=64.84 Aligned_cols=62 Identities=26% Similarity=0.265 Sum_probs=28.0
Q ss_pred EECCCCEECCCcEECCCCEECCCcEEe-ceEECCC--------CEECCCcEEE-ceEECCCCEECCCcEEcC
Q 017417 303 KIHPTAKIGPNVSISANARIGAGVRLI-SCIILDG--------VEIMENAVVT-NAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 303 ~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~--------~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 364 (372)
.|++++.+.+++.|++++.||+++.|. ++.|+.. +.|+++|.+. ++.+..++.|++++.|.+
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~ 73 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGA 73 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECc
Confidence 344444444444444444444444443 2444432 4444444444 344444444444444443
No 198
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.49 E-value=3.8e-07 Score=80.07 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=52.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECC------CcEECCCCEECCCcEEe---------ceEECCCCEECCCc-EEEceEECC
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGP------NVSISANARIGAGVRLI---------SCIILDGVEIMENA-VVTNAIVGW 352 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~------~s~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~-~i~~~~i~~ 352 (372)
.+.+++..+|.-|+.+++++++.. .+.||+||.||-++.|. .++|+++|.||.++ .++++++|+
T Consensus 126 gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGd 205 (271)
T COG2171 126 GTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGD 205 (271)
T ss_pred CcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCC
Confidence 344444344444444444444443 45566666666666662 57999999999998 666999999
Q ss_pred CCEECCCcEEcCC
Q 017417 353 KSSIGRWSRVQAS 365 (372)
Q Consensus 353 ~~~i~~~~~i~~~ 365 (372)
+|+|+.|+.|..+
T Consensus 206 g~VV~aGv~I~~~ 218 (271)
T COG2171 206 GCVVAAGVFITQD 218 (271)
T ss_pred CcEEecceEEeCC
Confidence 9999999999765
No 199
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.48 E-value=1e-06 Score=73.81 Aligned_cols=72 Identities=24% Similarity=0.276 Sum_probs=35.9
Q ss_pred CCcEECCCCEECCCCEECC--CcEECCCCEECCCcEEe-ceEECCC--------CEECCCcEEE-ceEECCCCEECCCcE
Q 017417 294 GDVYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLI-SCIILDG--------VEIMENAVVT-NAIVGWKSSIGRWSR 361 (372)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~--~s~ig~~~~i~~~~~i~-~~~i~~~--------~~i~~~~~i~-~~~i~~~~~i~~~~~ 361 (372)
.++.|+++++|++++.+.. +++|+++|+||++|.|. ++.|+.. ++|+++|.|. ++.|..+++||+++.
T Consensus 60 ~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~ 139 (162)
T TIGR01172 60 TGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAK 139 (162)
T ss_pred eCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCE
Confidence 3455555555555555542 24555555555555553 3444422 3455555554 455555555555555
Q ss_pred EcCC
Q 017417 362 VQAS 365 (372)
Q Consensus 362 i~~~ 365 (372)
|..+
T Consensus 140 Iga~ 143 (162)
T TIGR01172 140 IGAN 143 (162)
T ss_pred ECCC
Confidence 5444
No 200
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.47 E-value=1.3e-06 Score=67.92 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=28.2
Q ss_pred CcEECCCCEECCCCEEC-------------------CCcEECCCCEECCCcEE-eceEECCCCEECCCcEEE
Q 017417 295 DVYVHPSAKIHPTAKIG-------------------PNVSISANARIGAGVRL-ISCIILDGVEIMENAVVT 346 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~-------------------~~s~ig~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~ 346 (372)
++.|++++.|++++.|. ..+.||++|.|++++.+ .++.|++++.|+.++.+.
T Consensus 21 ~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~ 92 (109)
T cd04647 21 GITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVT 92 (109)
T ss_pred ceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEe
Confidence 56666666666666663 23445555555555544 244555555555554444
No 201
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.46 E-value=5.3e-07 Score=86.18 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=56.8
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcC
Q 017417 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 298 i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (372)
+.+.+.|++++.+ ++|+||++|+|+ +.|.+|+||++|.|+++|.|.+|++++++.|+.++.+..
T Consensus 275 ~~~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~ 338 (369)
T TIGR02092 275 DEPPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN 338 (369)
T ss_pred CCCCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE
Confidence 3477888888888 499999999997 469999999999999999999999999999999888764
No 202
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.45 E-value=1.7e-06 Score=74.92 Aligned_cols=71 Identities=24% Similarity=0.205 Sum_probs=57.0
Q ss_pred CCcEECCCCEECCCCEECC--CcEECCCCEECCCcEEe-------------------ceEECCCCEECCCcEEE-ceEEC
Q 017417 294 GDVYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLI-------------------SCIILDGVEIMENAVVT-NAIVG 351 (372)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~--~s~ig~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~-~~~i~ 351 (372)
.++.||+++.|..++++.+ +..||++|.|+++|.|. +.+|+++|.|+.+|+|. ++.||
T Consensus 74 ~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG 153 (203)
T PRK09527 74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIG 153 (203)
T ss_pred CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEEC
Confidence 5677778877777777743 47888888888888885 26888999999888888 88889
Q ss_pred CCCEECCCcEEcC
Q 017417 352 WKSSIGRWSRVQA 364 (372)
Q Consensus 352 ~~~~i~~~~~i~~ 364 (372)
+++.|++++.+..
T Consensus 154 ~~~vIgagsvV~k 166 (203)
T PRK09527 154 DNSVIGAGSVVTK 166 (203)
T ss_pred CCCEECCCCEEcc
Confidence 9999999988864
No 203
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.45 E-value=1.3e-06 Score=75.44 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=51.2
Q ss_pred CcEECCCCEECCCCEEC--CCcEECCCCEECCCcEEe----------------------------ceEECCCCEECCCcE
Q 017417 295 DVYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLI----------------------------SCIILDGVEIMENAV 344 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~--~~s~ig~~~~i~~~~~i~----------------------------~~~i~~~~~i~~~~~ 344 (372)
.+.||+++.|++++.+. +++.||++|.|++++.|. ++.|+++|.|+.++.
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~ 144 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVT 144 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCE
Confidence 45566666666666654 356666666666666554 257888888888888
Q ss_pred EE-ceEECCCCEECCCcEEcCC
Q 017417 345 VT-NAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 345 i~-~~~i~~~~~i~~~~~i~~~ 365 (372)
|. ++.|++++.|++++.+...
T Consensus 145 i~~g~~Ig~~~~Iga~s~v~~~ 166 (192)
T PRK09677 145 ILPGVSIGNGCIVGANSVVTKS 166 (192)
T ss_pred EcCCCEECCCCEECCCCEECcc
Confidence 87 8888999999998888753
No 204
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.43 E-value=1.8e-06 Score=66.40 Aligned_cols=75 Identities=24% Similarity=0.178 Sum_probs=40.7
Q ss_pred EcCCcEECCCCEECC--CCEECCCcEECCCCEECCCcEEec-eE--ECCCCEECCCcEEE-ceEECCCCEECCCcEEcCC
Q 017417 292 IIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLIS-CI--ILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 292 ~~~~~~i~~~~~i~~--~~~i~~~s~ig~~~~i~~~~~i~~-~~--i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (372)
+.+++.|++++.+.+ ++++++++.||++|.|+.+++|.+ +. ...++.|+++|.|. ++.+..+++|++++.|.++
T Consensus 5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~ 84 (101)
T cd03354 5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGAN 84 (101)
T ss_pred eCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCC
Confidence 334445555555543 334444445555555444444432 22 23444577777777 6777667777777777665
Q ss_pred C
Q 017417 366 S 366 (372)
Q Consensus 366 ~ 366 (372)
+
T Consensus 85 ~ 85 (101)
T cd03354 85 A 85 (101)
T ss_pred C
Confidence 4
No 205
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.43 E-value=1.6e-06 Score=78.01 Aligned_cols=11 Identities=27% Similarity=0.296 Sum_probs=5.3
Q ss_pred EEeCHhhHHHh
Q 017417 184 YVFTPDIFNAI 194 (372)
Q Consensus 184 y~~~~~~~~~l 194 (372)
+..+.|+-+.+
T Consensus 54 w~~~~w~k~~i 64 (272)
T PRK11830 54 WVVNQWVKKAI 64 (272)
T ss_pred EEEchHhheeE
Confidence 44555554444
No 206
>PLN02357 serine acetyltransferase
Probab=98.40 E-value=1.3e-06 Score=80.97 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=61.7
Q ss_pred cEEcCCcEECCCCEECCCCEECC--------CcEECCCCEECCCcEEe-ceEECCCCEECCCcEEEceEECCCCEECCCc
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGP--------NVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWS 360 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~--------~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 360 (372)
..+.++++||+++.|..++++++ .++||++|.||.++.|. ++.||+++.|+.+++|...+-...+++|.-+
T Consensus 247 iVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~dVP~~~~v~G~PA 326 (360)
T PLN02357 247 VVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVGNPA 326 (360)
T ss_pred eEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECCCCEECcccCCCcEEECCCe
Confidence 45556677777777777777764 37899999999998885 7899999999999999987776677788888
Q ss_pred EEcCCCC
Q 017417 361 RVQASSK 367 (372)
Q Consensus 361 ~i~~~~~ 367 (372)
++-+...
T Consensus 327 rvv~~~~ 333 (360)
T PLN02357 327 RLIGGKE 333 (360)
T ss_pred EEEccCC
Confidence 8876653
No 207
>PRK10502 putative acyl transferase; Provisional
Probab=98.39 E-value=1.8e-06 Score=73.83 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=53.2
Q ss_pred CcEECCCCEECCCCEEC--CCcEECCCCEECCCcEEe----------------ceEECCCCEECCCcEEE-ceEECCCCE
Q 017417 295 DVYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLI----------------SCIILDGVEIMENAVVT-NAIVGWKSS 355 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~--~~s~ig~~~~i~~~~~i~----------------~~~i~~~~~i~~~~~i~-~~~i~~~~~ 355 (372)
+..|++++.|++++.+. +.+.||++|.|+.++.|. +..|+++|.|+.+|.|. ++.|+++++
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~v 150 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAV 150 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCE
Confidence 35677778888877775 357788888888887772 35788888888888886 788888888
Q ss_pred ECCCcEEcC
Q 017417 356 IGRWSRVQA 364 (372)
Q Consensus 356 i~~~~~i~~ 364 (372)
|++++.+..
T Consensus 151 Iga~svV~~ 159 (182)
T PRK10502 151 VGARSSVFK 159 (182)
T ss_pred ECCCCEEec
Confidence 888887654
No 208
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.39 E-value=1.3e-06 Score=82.98 Aligned_cols=63 Identities=33% Similarity=0.234 Sum_probs=32.6
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcE-----EEceEECCCCEECCC
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAV-----VTNAIVGWKSSIGRW 359 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~-----i~~~~i~~~~~i~~~ 359 (372)
+.+.++++|++++.| + +++|+++|.||++|+|.+|+|+++|+|+++|+ |.+|+|++++.|+.+
T Consensus 249 ~~i~~~~~i~~~~~i-~------~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~ 316 (353)
T TIGR01208 249 SKIRGRVVVGEGAKI-V------NSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGV 316 (353)
T ss_pred CEEcCCEEECCCCEE-e------CCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCC
Confidence 334444555555555 4 44444444555555544455555555555555 456666666666544
No 209
>PLN02739 serine acetyltransferase
Probab=98.39 E-value=1.2e-06 Score=80.50 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=39.3
Q ss_pred cEEcCCcEECCCCEECCCCEECC--------CcEECCCCEECCCcEEe-ceEECCCCEECCCcEEEceEECCCCEECCCc
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGP--------NVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWS 360 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~--------~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 360 (372)
..+..++.||.++.|..+++|++ ...||++|.||.+++|. ++.||++++||.|++|...+=...+.+|.-+
T Consensus 226 VVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kDVP~~stvvG~PA 305 (355)
T PLN02739 226 VVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNPA 305 (355)
T ss_pred eEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCCCCCCcEEEecCC
Confidence 34444555555555555555542 25666666666666664 4666666666666666543322233344444
Q ss_pred EE
Q 017417 361 RV 362 (372)
Q Consensus 361 ~i 362 (372)
++
T Consensus 306 ri 307 (355)
T PLN02739 306 KL 307 (355)
T ss_pred EE
Confidence 43
No 210
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.38 E-value=1.1e-06 Score=86.55 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=28.0
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECC
Q 017417 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGR 358 (372)
Q Consensus 291 ~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~ 358 (372)
.+.+++.|++++.|++++.|. +|+||++|.|+. +.+.+|+||++|.|+++|.|. +++|++++.|+.
T Consensus 279 ~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~ 345 (458)
T PRK14354 279 VIKGNTVIGEDCVIGPGSRIV-DSTIGDGVTITN-SVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGN 345 (458)
T ss_pred EEecceEECCCCEECCCcEEe-ccEECCCCEEEE-EEEeCCEECCCcEECCceEecCCCEEeCCcEECC
Confidence 344445555555555555543 444444444432 233334444444444444333 333333333333
No 211
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.38 E-value=2e-06 Score=75.81 Aligned_cols=112 Identities=20% Similarity=0.282 Sum_probs=76.4
Q ss_pred eEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccchHHHHHHHhhccCCCCeeEEEe
Q 017417 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (372)
Q Consensus 10 ~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~ 83 (372)
.|||+|-| .++|+ | -|.|.+++|+|||+|+++++.+ |+|.+. .+++.+.+..+ +..+.+.
T Consensus 1 iaiIpAR~--gS~rl-p-----~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd--~~~i~~~~~~~----g~~v~~~ 66 (217)
T PF02348_consen 1 IAIIPARG--GSKRL-P-----GKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATD--DEEIDDIAEEY----GAKVIFR 66 (217)
T ss_dssp EEEEEE-S--SSSSS-T-----TGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES--SHHHHHHHHHT----TSEEEE-
T ss_pred CEEEecCC--CCCCC-C-----cchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCC--CHHHHHHHHHc----CCeeEEc
Confidence 38999988 67777 4 5999999999999999999877 666664 34566666554 3556555
Q ss_pred cCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCc
Q 017417 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGM 136 (372)
Q Consensus 84 ~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~ 136 (372)
..+...++ .....+......+..+.++.+.||.++ +..+.++++.+.+...+
T Consensus 67 ~~~~~~~~-~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 67 RGSLADDT-DRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp -TTSSSHH-HHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred ChhhcCCc-ccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 54443333 444444444332233589999999998 45689999998888765
No 212
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.38 E-value=2.9e-06 Score=76.56 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=53.0
Q ss_pred cEEcCCcEECCCCE-ECCCCE---ECCCcEECCCCEECCCcEEe-----c----eEECCCCEECCCcEEEceEECCCCEE
Q 017417 290 ATIIGDVYVHPSAK-IHPTAK---IGPNVSISANARIGAGVRLI-----S----CIILDGVEIMENAVVTNAIVGWKSSI 356 (372)
Q Consensus 290 ~~~~~~~~i~~~~~-i~~~~~---i~~~s~ig~~~~i~~~~~i~-----~----~~i~~~~~i~~~~~i~~~~i~~~~~i 356 (372)
+.+.+.++|+.++. ++.+++ +..+++||.+|.||.+|.|- + +.||++|.||.+|.| +..||++|+|
T Consensus 197 T~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IGe~~lIGagA~I-GI~IGd~~iI 275 (341)
T TIGR03536 197 TTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLLGANAGI-GIPLGDRCTV 275 (341)
T ss_pred CEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEECCCcEECCCCEE-eeEECCCCEE
Confidence 34444445555554 444444 44566677777777777663 3 788889999999998 8889999999
Q ss_pred CCCcEEcCCC
Q 017417 357 GRWSRVQASS 366 (372)
Q Consensus 357 ~~~~~i~~~~ 366 (372)
|.|+.|.++.
T Consensus 276 GAGavVtagT 285 (341)
T TIGR03536 276 EAGLYITAGT 285 (341)
T ss_pred CCCCEEeCCc
Confidence 9999887663
No 213
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.37 E-value=3.8e-06 Score=69.72 Aligned_cols=76 Identities=25% Similarity=0.249 Sum_probs=44.2
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEE---------CCCCEECCCcEEe-----ceEECCCCEECCCcEEEceEECCCCEE
Q 017417 291 TIIGDVYVHPSAKIHPTAKIGPNVSI---------SANARIGAGVRLI-----SCIILDGVEIMENAVVTNAIVGWKSSI 356 (372)
Q Consensus 291 ~~~~~~~i~~~~~i~~~~~i~~~s~i---------g~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~i 356 (372)
.+.+++.+--++.|++++.|..+++| |+++-|.+||.|. .+.||++++||+++.|.+|.|+++|.|
T Consensus 19 ~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lI 98 (176)
T COG0663 19 FVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLI 98 (176)
T ss_pred EECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEE
Confidence 33444433344444444444444443 3333344444443 567777777777777777777777777
Q ss_pred CCCcEEcCCC
Q 017417 357 GRWSRVQASS 366 (372)
Q Consensus 357 ~~~~~i~~~~ 366 (372)
|-++.|..|+
T Consensus 99 GmgA~vldga 108 (176)
T COG0663 99 GMGATVLDGA 108 (176)
T ss_pred ecCceEeCCc
Confidence 7777776654
No 214
>PRK10502 putative acyl transferase; Provisional
Probab=98.33 E-value=2.4e-06 Score=73.05 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=14.4
Q ss_pred cEECCCCEECCCcEEe---ceEECCCCEECCCcEE
Q 017417 314 VSISANARIGAGVRLI---SCIILDGVEIMENAVV 345 (372)
Q Consensus 314 s~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i 345 (372)
..||++|.|++++.|. .+.||++|.|+++|.|
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I 106 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYL 106 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEE
Confidence 4444444444444443 2444444444444443
No 215
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.32 E-value=2.8e-06 Score=71.34 Aligned_cols=76 Identities=26% Similarity=0.188 Sum_probs=60.4
Q ss_pred CcEEcCCcEECCCCEECC--CCEECCCcEECCCCEECCCcEEe---------ceEECCCCEECCCcEEE-ceEECCCCEE
Q 017417 289 NATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLI---------SCIILDGVEIMENAVVT-NAIVGWKSSI 356 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~--~~~i~~~s~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (372)
...+++.+.||++..|.. +++|++.++||++|.|..+++|. .=.|++++.||.|+.|- +-.||+++.|
T Consensus 67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akI 146 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKI 146 (194)
T ss_pred ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEE
Confidence 456677777777777764 46777778888888888787774 23899999999999987 8999999999
Q ss_pred CCCcEEcC
Q 017417 357 GRWSRVQA 364 (372)
Q Consensus 357 ~~~~~i~~ 364 (372)
|++|.+..
T Consensus 147 GA~sVVlk 154 (194)
T COG1045 147 GAGSVVLK 154 (194)
T ss_pred CCCceEcc
Confidence 99999864
No 216
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.32 E-value=5.2e-06 Score=74.58 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=43.1
Q ss_pred ECCCcEECCCCEECCCcEEec---------eEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 310 IGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 310 i~~~s~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
|...++||++|.|+.++.|.. +.|+++|.||.+|.| +..||++|+||.|+.+..+
T Consensus 196 I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVVtkg 259 (319)
T TIGR03535 196 ISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL-GISLGDDCVVEAGLYVTAG 259 (319)
T ss_pred EccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE-CeEECCCCEECCCCEEeCC
Confidence 334566777777777777433 789999999999998 8889999999999988655
No 217
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.31 E-value=3.6e-06 Score=76.01 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=41.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCCE-ECCCcE---Ee-ceEECCCCEECCCcEEEc---------eEECCCC
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANAR-IGAGVR---LI-SCIILDGVEIMENAVVTN---------AIVGWKS 354 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~-i~~~~~---i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~ 354 (372)
...+.+.++|.+++.|++|++|.++++|+.++. +|.++. |. +++|+++|.||.+|+|.. +.||++|
T Consensus 178 gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IGe~~ 257 (341)
T TIGR03536 178 GVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGC 257 (341)
T ss_pred CcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEECCCc
Confidence 344455555556666666666665566666666 554444 32 567777777777777632 3444455
Q ss_pred EECCCcEE
Q 017417 355 SIGRWSRV 362 (372)
Q Consensus 355 ~i~~~~~i 362 (372)
.||.++.|
T Consensus 258 lIGagA~I 265 (341)
T TIGR03536 258 LLGANAGI 265 (341)
T ss_pred EECCCCEE
Confidence 55555544
No 218
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.6e-06 Score=76.93 Aligned_cols=82 Identities=21% Similarity=0.147 Sum_probs=72.1
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEc--------------eEECC
Q 017417 287 TKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTN--------------AIVGW 352 (372)
Q Consensus 287 ~~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~--------------~~i~~ 352 (372)
.+.+++.+++.||++++|++|+.+. .|+|=++|+|.+|+.|.+|+||-.+.||.++.++. +++|.
T Consensus 298 hptAkiGPNVSIga~vrvg~GvRl~-~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga 376 (407)
T KOG1460|consen 298 HPTAKIGPNVSIGANVRVGPGVRLR-ESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGA 376 (407)
T ss_pred CCccccCCCceecCCceecCCceee-eeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecc
Confidence 3567788888999999999999998 99999999999999999999999999999998875 78889
Q ss_pred CCEECCCcEEcCCCCcC
Q 017417 353 KSSIGRWSRVQASSKYN 369 (372)
Q Consensus 353 ~~~i~~~~~i~~~~~~~ 369 (372)
+|.+++-+.+.++...|
T Consensus 377 ~v~v~dev~v~~s~vlp 393 (407)
T KOG1460|consen 377 DVSVEDEVIVLNSIVLP 393 (407)
T ss_pred cceecceeEEeeeeEec
Confidence 99999999888875544
No 219
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.29 E-value=2.9e-06 Score=84.01 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=16.8
Q ss_pred eceEECCCCEECCCcEEEceEECCCCEECCCcEEc
Q 017417 329 ISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 329 ~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 363 (372)
.+|+|++++.|+..+.+.+++||++|.||.++.+.
T Consensus 356 ~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~ 390 (482)
T PRK14352 356 KNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFV 390 (482)
T ss_pred cccEECCCcEEccCceecccEECCCcEECCCcEEe
Confidence 33444444444444444445555555555555543
No 220
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.26 E-value=2.8e-06 Score=82.99 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=22.6
Q ss_pred EECCCcEEeceEECCCCEECCCcEEE--------ceEECCCCEECCCcEEcC
Q 017417 321 RIGAGVRLISCIILDGVEIMENAVVT--------NAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 321 ~i~~~~~i~~~~i~~~~~i~~~~~i~--------~~~i~~~~~i~~~~~i~~ 364 (372)
+||.++.|.+|+|+++|.||+++++. .+.||+++.||.++.|.+
T Consensus 333 ~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~ 384 (430)
T PRK14359 333 KAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVA 384 (430)
T ss_pred cccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeC
Confidence 33344444555556666666655553 145555555555555543
No 221
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.25 E-value=4.8e-06 Score=80.63 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=47.8
Q ss_pred CCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcC
Q 017417 312 PNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 312 ~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (372)
.+++||++|.|+ +++|.+|+||++|.|+++|.|++|+|+++|.|++++.|..
T Consensus 314 ~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~ 365 (407)
T PRK00844 314 QDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR 365 (407)
T ss_pred EeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe
Confidence 479999999998 9999999999999999999999999999999999988865
No 222
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.23 E-value=3.2e-06 Score=82.98 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=14.8
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCCEE
Q 017417 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARI 322 (372)
Q Consensus 291 ~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i 322 (372)
.+.+++.||+++.|++++.+. +|+||++|.|
T Consensus 269 ~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I 299 (448)
T PRK14357 269 FIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKI 299 (448)
T ss_pred EEEeeeEECCCcEECCCceec-ccEECCCCEE
Confidence 334445555555555555443 3444444444
No 223
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=4.8e-06 Score=78.98 Aligned_cols=69 Identities=25% Similarity=0.207 Sum_probs=50.9
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
+.+.+.+.|++++.|++++.+. +|+|.++|+|+.++.|.+|+|+.+|+|++++ . +++ +.+|.++.+.++
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~-~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-~----i~d-~~~g~~~~i~~g 342 (358)
T COG1208 274 ALIGPYTVIGEGVTIGNGVEIK-NSIIMDNVVIGHGSYIGDSIIGENCKIGASL-I----IGD-VVIGINSEILPG 342 (358)
T ss_pred CEECCCcEECCCCEECCCcEEE-eeEEEcCCEECCCCEEeeeEEcCCcEECCce-e----ecc-eEecCceEEcCc
Confidence 4455556666666666666665 8999999999999999999999999999822 1 666 666666666555
No 224
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.22 E-value=3.9e-06 Score=81.76 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=58.4
Q ss_pred EcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECC-------------------
Q 017417 292 IIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGW------------------- 352 (372)
Q Consensus 292 ~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~------------------- 352 (372)
+.+.+.+.+.+.+. ++.+. +|.||++|.| +++.|.+|+||++|+|+++|.|.+|+|+.
T Consensus 289 i~~~~~~~~~a~~~-~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~ 365 (429)
T PRK02862 289 IYTRARYLPPSKLL-DATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKP 365 (429)
T ss_pred eeccCCCCCCcccc-ccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCc
Confidence 34445566777774 56776 7999999999 89999999999999999999999999976
Q ss_pred CCEECCCcEEcC
Q 017417 353 KSSIGRWSRVQA 364 (372)
Q Consensus 353 ~~~i~~~~~i~~ 364 (372)
++.||+++.|..
T Consensus 366 ~~~Ig~~~~i~~ 377 (429)
T PRK02862 366 PLGIGEGTTIKR 377 (429)
T ss_pred ccEECCCCEEEE
Confidence 688999888865
No 225
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.22 E-value=3.2e-06 Score=72.89 Aligned_cols=62 Identities=27% Similarity=0.444 Sum_probs=33.3
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEc
Q 017417 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 291 ~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (372)
.+++.++|.|+++|+++++|++.|+||++|+|+++ ++|+++++|+ .+.||.+++|-+++.|.
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~-----------t~l~shvvv~G~T~IG~~n~I~~~A~iG 67 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDG-----------TVLKSHVVVEGHTTIGRNNRIFPFASIG 67 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCC-----------cEEcccEEEeCCeEECCCCEEecccccC
Confidence 45555666666666665555555555555555544 4444455554 45555555555555444
No 226
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.20 E-value=9.1e-05 Score=67.90 Aligned_cols=182 Identities=15% Similarity=0.222 Sum_probs=108.3
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCccc-CCcchhhhhHhhcce----------EEEEcc-cchHHHHHHHhhccC
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL-GGQPMVHHPISACKR----------IYLVGF-YEEREFALYVSSISN 74 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv-~g~pli~~~l~~l~~----------i~vv~~-~~~~~i~~~~~~~~~ 74 (372)
.++.+|+|||| .||||+- +.||.|+|| .++++++..++++.. ++|.++ ...++...+++++..
T Consensus 2 ~kvavl~LaGG--~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~ 76 (300)
T cd00897 2 NKLVVLKLNGG--LGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG 76 (300)
T ss_pred CcEEEEEecCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC
Confidence 46889999999 9999976 889999999 556999999888754 555555 445668888876531
Q ss_pred CCCeeEEEecC------------------------CcccChHHH---HHH--HHHHhhccCCCeEEEEcCCeeecCChHH
Q 017417 75 ELRIPVRYLRE------------------------DKPHGSAGA---LYN--FRDLIMEDNPSHIFLLNCDVCCSFPLPE 125 (372)
Q Consensus 75 ~~~~~i~~~~~------------------------~~~~g~~~a---l~~--~~~~l~~~~~~~vlv~~gD~i~~~~l~~ 125 (372)
....+.+..| -.+.|.++- ++. .++.+....-+++.+.+.|.+...-=..
T Consensus 77 -~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~ 155 (300)
T cd00897 77 -VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLR 155 (300)
T ss_pred -CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHH
Confidence 1111221111 012333322 221 1333444445799999999975432234
Q ss_pred HHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCceeEeeecCCC--------cccCceeeeEEEeCHhhHHHhh
Q 017417 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPET--------FVSDLINCGVYVFTPDIFNAIQ 195 (372)
Q Consensus 126 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~v~~i~ek~~~--------~~~~~~~~Giy~~~~~~~~~l~ 195 (372)
++..+..+++++++=+.+-.. ....-|.+......-+|.++.+-|.+ ..-.+.+++.++|+-++++.+.
T Consensus 156 ~lg~~~~~~~~~~~evv~Kt~-~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~~ 232 (300)
T cd00897 156 ILNHMVDNKAEYIMEVTDKTR-ADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRVV 232 (300)
T ss_pred HHHHHHhcCCceEEEEeecCC-CCCcccEEEEECCEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHHH
Confidence 666677778887764443211 11233444332112246666664422 1234678888999977777654
No 227
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.18 E-value=4.1e-06 Score=81.50 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=47.5
Q ss_pred CcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECCCcEEcC
Q 017417 313 NVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 313 ~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (372)
+|+||++|.| ++|.|.+|+|+++|.|+++|.|.+|+|+++|+||+++.|..
T Consensus 327 ~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~ 377 (425)
T PRK00725 327 NSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRR 377 (425)
T ss_pred eCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEee
Confidence 8999999999 78999999999999999999999999999999999998864
No 228
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.18 E-value=1.1e-05 Score=68.86 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=32.1
Q ss_pred cEECCCCEECCCCEECC------------CcEECCCCEECCCcEE-eceEECCCCEECCCcEEE-ceEECCCCEECCCcE
Q 017417 296 VYVHPSAKIHPTAKIGP------------NVSISANARIGAGVRL-ISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSR 361 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~~------------~s~ig~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~ 361 (372)
+.||.++.|++++.+.. +..++..+.||++|.| .+++|.++++||++|+|. +|++.++ |.+++.
T Consensus 94 I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i 171 (183)
T PRK10092 94 IRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVV 171 (183)
T ss_pred EEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc--cCCCcE
Confidence 35566666666555531 0111233333333333 234444444555555544 4444433 355555
Q ss_pred EcCCCCc
Q 017417 362 VQASSKY 368 (372)
Q Consensus 362 i~~~~~~ 368 (372)
+.+.|.+
T Consensus 172 ~~G~PAr 178 (183)
T PRK10092 172 VGGNPAR 178 (183)
T ss_pred EEecCcE
Confidence 5555443
No 229
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.12 E-value=2.2e-05 Score=64.45 Aligned_cols=37 Identities=22% Similarity=0.114 Sum_probs=28.8
Q ss_pred eceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcCC
Q 017417 329 ISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 329 ~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (372)
.+++|+++|.|+.+|.|. ++.|+++++||+++.|.+.
T Consensus 72 ~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~ 109 (145)
T cd03349 72 GDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD 109 (145)
T ss_pred CCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc
Confidence 467888888888888886 7888888888888877653
No 230
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.10 E-value=1.7e-05 Score=67.11 Aligned_cols=53 Identities=30% Similarity=0.382 Sum_probs=29.4
Q ss_pred CcEECCCCEECCCCEEC------------------CCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEEc
Q 017417 295 DVYVHPSAKIHPTAKIG------------------PNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTN 347 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~------------------~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 347 (372)
++.||+++.|++++.|. .++.||++|.||.+++|. ++.|+++|+|+.++++..
T Consensus 82 ~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~ 153 (169)
T cd03357 82 PVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTK 153 (169)
T ss_pred cEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 45666666666666662 245555555555555543 355555555555555554
No 231
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.09 E-value=2.7e-05 Score=67.48 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=6.8
Q ss_pred cEECCCCEECCCCEE
Q 017417 296 VYVHPSAKIHPTAKI 310 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i 310 (372)
+.||.++.|+++|.|
T Consensus 96 I~IGd~v~Ig~~v~I 110 (203)
T PRK09527 96 VTIGDNVLIAPNVTL 110 (203)
T ss_pred EEECCCCEECCCCEE
Confidence 344444444444444
No 232
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.08 E-value=2.8e-05 Score=67.16 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=27.2
Q ss_pred cEECCCCEECCCCEE----CCCcEECCCCEECCCcEEe---ceEECCCCEECCCcEEE
Q 017417 296 VYVHPSAKIHPTAKI----GPNVSISANARIGAGVRLI---SCIILDGVEIMENAVVT 346 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i----~~~s~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~ 346 (372)
..+|+++.++.++.+ .+...||++|.|++++.|. ++.||++|.|++++.|.
T Consensus 44 I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~ 101 (192)
T PRK09677 44 INFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFIT 101 (192)
T ss_pred EEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEE
Confidence 334444444444444 2345566666666666554 45666666666665554
No 233
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.03 E-value=2.2e-05 Score=76.77 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=57.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECC---------------C---CEECCCcEEeceEECCCCEECCCcEEE----
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISA---------------N---ARIGAGVRLISCIILDGVEIMENAVVT---- 346 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~---------------~---~~i~~~~~i~~~~i~~~~~i~~~~~i~---- 346 (372)
.+.+ .+++|++++.|+++|+|....++|. + ++|+++|+|.+++|+++|.|+++|.|.
T Consensus 326 ~~~I-~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~ 404 (436)
T PLN02241 326 ECKI-EHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDG 404 (436)
T ss_pred CeEE-EeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccc
Confidence 3444 3578888888888888874444452 3 389999999999999999999999996
Q ss_pred ---------ceEECCC-CEECCCcEEcCCC
Q 017417 347 ---------NAIVGWK-SSIGRWSRVQASS 366 (372)
Q Consensus 347 ---------~~~i~~~-~~i~~~~~i~~~~ 366 (372)
++.++++ |.||.++.|..++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 434 (436)
T PLN02241 405 VQEADREEEGYYIRSGIVVILKNAVIPDGT 434 (436)
T ss_pred cCCccccccccEEeCCEEEEcCCcEeCCCC
Confidence 4666666 5677777766554
No 234
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.03 E-value=3.4e-05 Score=59.93 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=35.0
Q ss_pred CCcEECCCCEECCCCEEC---------------CCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEEce
Q 017417 294 GDVYVHPSAKIHPTAKIG---------------PNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNA 348 (372)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~---------------~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 348 (372)
+.+.||.++.|++++++. +...||++|.|+.++.|. ++.|+++|.|+.+|.+...
T Consensus 22 ~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~ 92 (107)
T cd05825 22 APVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRD 92 (107)
T ss_pred CceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCc
Confidence 346667777777666653 245677777777776664 4666666666666666643
No 235
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=97.96 E-value=5.8e-05 Score=67.93 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=36.0
Q ss_pred EcCCcEECCCCEECCCCEECCCc-EECCCCEECCCcEEe-ceEECCCCEECCCcEEEc---------eEECCCCEECCCc
Q 017417 292 IIGDVYVHPSAKIHPTAKIGPNV-SISANARIGAGVRLI-SCIILDGVEIMENAVVTN---------AIVGWKSSIGRWS 360 (372)
Q Consensus 292 ~~~~~~i~~~~~i~~~~~i~~~s-~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~i~~~~ 360 (372)
+.-.++|++|+.|.++++|..++ .||+. .| +++|. +|.||++|.|+.++.|.+ +.||++|.||.+|
T Consensus 162 VRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA 238 (319)
T TIGR03535 162 VRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANS 238 (319)
T ss_pred eeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCC
Confidence 33445555555555555555555 35543 33 23343 456666666666666332 5556666666655
Q ss_pred EE
Q 017417 361 RV 362 (372)
Q Consensus 361 ~i 362 (372)
.|
T Consensus 239 ~I 240 (319)
T TIGR03535 239 GL 240 (319)
T ss_pred EE
Confidence 55
No 236
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.90 E-value=1.1e-05 Score=72.88 Aligned_cols=78 Identities=21% Similarity=0.192 Sum_probs=57.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcCCCC
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQASSK 367 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~ 367 (372)
.+.+.++++||+++.|+.|+.+. .|.|=.+..++.++.|+.|+++-+++||.++.|+ +++||++|.|.+--.+.++.-
T Consensus 276 ~C~Ig~~vvIG~r~~i~~gV~l~-~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g~~ 354 (371)
T KOG1322|consen 276 NCSIGPNVVIGPRVRIEDGVRLQ-DSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVNEGSG 354 (371)
T ss_pred ccEECCCceECCCcEecCceEEE-eeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEeccccccccee
Confidence 34455555555555555555555 5555667777788888889999999999999998 899999999988888777643
No 237
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=97.88 E-value=7.7e-05 Score=63.81 Aligned_cols=111 Identities=21% Similarity=0.248 Sum_probs=69.6
Q ss_pred eeEEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce------EEEEcccch--HHHHHHHhhccCCCCeeE
Q 017417 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE--REFALYVSSISNELRIPV 80 (372)
Q Consensus 9 ~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~------i~vv~~~~~--~~i~~~~~~~~~~~~~~i 80 (372)
+.++|+.|- .||.-.| -|.|+|++++|||+++|+++.. ++|.+...+ ..+..++.+. | +
T Consensus 3 ~I~~IiQAR--mgStRLp-----gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~----G--~ 69 (241)
T COG1861 3 MILVIIQAR--MGSTRLP-----GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH----G--F 69 (241)
T ss_pred cEEEEeeec--ccCccCC-----cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc----C--e
Confidence 344555554 4443334 5999999999999999999877 677666433 3466666543 2 2
Q ss_pred EEecCCcccChHHHHH-HHHHHhhccCCCeEEEEcCCeeec--CChHHHHHHHHhcCCce
Q 017417 81 RYLREDKPHGSAGALY-NFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHRNYGGMG 137 (372)
Q Consensus 81 ~~~~~~~~~g~~~al~-~~~~~l~~~~~~~vlv~~gD~i~~--~~l~~~l~~~~~~~~~~ 137 (372)
.+. .|+.+-++ .-...++..+++.++=+.||.++- .-+..+++.|.+.++|.
T Consensus 70 ~vf-----rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 70 YVF-----RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred eEe-----cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 222 34433333 333333333346899999999983 33677888888876643
No 238
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.87 E-value=2e-05 Score=62.15 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=26.6
Q ss_pred cEECCCCEECCCCEECC---CcEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEE
Q 017417 296 VYVHPSAKIHPTAKIGP---NVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVT 346 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~~---~s~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~ 346 (372)
..+...+.|.++++|++ |..+|+.|.+++++.|+ +..||+.+.|+++|++.
T Consensus 34 I~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVn 100 (184)
T KOG3121|consen 34 ILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVN 100 (184)
T ss_pred EEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEee
Confidence 34444444445555543 55566666666666554 22455555555555544
No 239
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=97.86 E-value=0.00011 Score=70.93 Aligned_cols=84 Identities=21% Similarity=0.293 Sum_probs=55.5
Q ss_pred eEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCC---------ceeEeeecCC-------
Q 017417 109 HIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN---------ELLHYTEKPE------- 172 (372)
Q Consensus 109 ~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~---------~v~~i~ek~~------- 172 (372)
-++|..+|.++...-...+. . . +..++++..+...+-....|....+. ++ .+.+|..||.
T Consensus 55 Gv~V~s~D~vl~~~~~~~~~-~-~-~~g~~~la~p~~~~~at~HGVfv~~~-~~~~~~~~~~~~v~~~L~KpS~eem~~~ 130 (414)
T PF07959_consen 55 GVLVCSGDMVLSVPDDPLID-W-D-EPGVTALAHPSSLEYATNHGVFVLDR-QGPDEEDLEYREVKDFLQKPSEEEMRAS 130 (414)
T ss_pred ceEEEecccccccCccccCC-C-C-CCCEEEEEeeCCHHHhcCCeEEEeCC-CCCccccchhhhHHHhhcCCCHHHHHhC
Confidence 48999999554222111221 1 1 25678888887666678889888887 45 6777777762
Q ss_pred ----CcccCceeeeEEEeCHhhHHHhhh
Q 017417 173 ----TFVSDLINCGVYVFTPDIFNAIQG 196 (372)
Q Consensus 173 ----~~~~~~~~~Giy~~~~~~~~~l~~ 196 (372)
.......++|++.|+.+..+.|..
T Consensus 131 ~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 131 GAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred CcccCCCcccccccceeccHHHHHHHHH
Confidence 123445689999999888887644
No 240
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.84 E-value=7e-05 Score=63.85 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=57.8
Q ss_pred CCCCCcccCC--cchhhhhHhhcce----EEEEcccchHHHHHHHhhccCCCCeeEEEec-CCcccChHHHHHHHHHHhh
Q 017417 31 IPKPLFPLGG--QPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR-EDKPHGSAGALYNFRDLIM 103 (372)
Q Consensus 31 ~pK~llpv~g--~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~-~~~~~g~~~al~~~~~~l~ 103 (372)
.+|+|+++.| +|||+|+++.+.. |+|+...... . ...+.. ++. .....|...++..++....
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~~~~~iivv~~~~~~-~--------~~~~~~--~i~d~~~g~gpl~~~~~gl~~~~ 71 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQRCAPVFVMAAPGQP-L--------PELPAP--VLRDELRGLGPLPATGRGLRAAA 71 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhhcCCEEEEECCCCcc-c--------ccCCCC--EeccCCCCCCcHHHHHHHHHHHH
Confidence 3899999999 9999999998765 6666553321 1 111222 222 2223567776666665432
Q ss_pred ccCCCeEEEEcCCeee-c-CChHHHHHHHHh
Q 017417 104 EDNPSHIFLLNCDVCC-S-FPLPEMLDAHRN 132 (372)
Q Consensus 104 ~~~~~~vlv~~gD~i~-~-~~l~~~l~~~~~ 132 (372)
....++++|+.||+++ . ..+..+++.+..
T Consensus 72 ~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 72 EAGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred hcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 2223689999999998 3 347777775543
No 241
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.77 E-value=2.3e-05 Score=62.28 Aligned_cols=80 Identities=23% Similarity=0.169 Sum_probs=56.1
Q ss_pred cEEcCCcEECCCCEECCCCEEC---CCcEECCCCEECCCcEEec-------------------------------eEECC
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIG---PNVSISANARIGAGVRLIS-------------------------------CIILD 335 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~---~~s~ig~~~~i~~~~~i~~-------------------------------~~i~~ 335 (372)
+.+.+++.|++++.|.|.+.+. +.-+||+++.|.+.+.|++ -.+|+
T Consensus 21 s~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd 100 (190)
T KOG4042|consen 21 SDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGD 100 (190)
T ss_pred cccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcC
Confidence 3567788888888888887765 4678888888877776642 13455
Q ss_pred CCEECCCcEEE-ceEECCCCEECCCcEEcCCCCcC
Q 017417 336 GVEIMENAVVT-NAIVGWKSSIGRWSRVQASSKYN 369 (372)
Q Consensus 336 ~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~ 369 (372)
..+|+..|.++ ++++.++|+||+++++++--+.|
T Consensus 101 ~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lp 135 (190)
T KOG4042|consen 101 RNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLP 135 (190)
T ss_pred cceEeeeeEecCCcEEcCCceeccceEEecccccC
Confidence 55666666666 67777777777777777654444
No 242
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=97.77 E-value=0.00011 Score=76.85 Aligned_cols=217 Identities=11% Similarity=0.076 Sum_probs=118.2
Q ss_pred eEEEEcCCeeecCC--hHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCC-CceeEeeecCC--------CcccC
Q 017417 109 HIFLLNCDVCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT-NELLHYTEKPE--------TFVSD 177 (372)
Q Consensus 109 ~vlv~~gD~i~~~~--l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~-~~v~~i~ek~~--------~~~~~ 177 (372)
.++|..||.+...+ +.+ -.++++++.....+.+-....|.+..+.+. +.+..+-.||. .....
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~ 227 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLF 227 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeE
Confidence 58999999765322 222 123566666666665667788888887531 57777888873 23456
Q ss_pred ceeeeEEEeCHhhHHHhhhcc-cccchhhhhhccchhhhhhhcccccccccccccccccccCC----------CCceEEE
Q 017417 178 LINCGVYVFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA----------GKKQLYT 246 (372)
Q Consensus 178 ~~~~Giy~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~----------~~~~v~~ 246 (372)
+.++|+|+|+....+.|.... .+... ... ..|.| .|+++.|- ...++..
T Consensus 228 l~D~g~~~~~~~a~~~L~~~~~~~~~~--~~~---------------~~dlY---~Df~~aLg~~~~~~~~el~~l~~~i 287 (974)
T PRK13412 228 LMDIGIWLLSDRAVELLMKRSGKEDGG--KLK---------------YYDLY---SDFGLALGTHPRIGDDELNALSVAI 287 (974)
T ss_pred EEeeeEEEEChHHHHHHHHhhhcccCC--cce---------------eeehH---HHHHHhcCCCCCcchhhhcccceEE
Confidence 789999999998888776542 11110 000 01122 22222211 2234444
Q ss_pred eec-chhhhhcCCccccccchHHHHhhccccCCccccCCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCCEECCC
Q 017417 247 YET-MDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAG 325 (372)
Q Consensus 247 ~~~-~~~w~~i~t~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~ 325 (372)
... ++.|+++||-..|+.....+.... ..++.++........+...-++++++++.+++++..-++|.|+.+++||++
T Consensus 288 ~~L~~~~F~H~GTs~E~l~~~~~~q~~~-~~~~~i~~~~~~~~~~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~ 366 (974)
T PRK13412 288 LPLPGGEFYHYGTSRELISSTLAVQNLV-TDQRRIMHRKVKPHPAMFVQNAVLSGKLTAENATLWIENSHVGEGWKLASR 366 (974)
T ss_pred EEcCCceeEEecCcHHHhcCchhHHHHh-hhhhhhhccccCCCCceEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCC
Confidence 444 457889999988886432221111 112223332222222233445666666666666443346777777777777
Q ss_pred cEEeceEECC-CCEECCCcEEEceEECC
Q 017417 326 VRLISCIILD-GVEIMENAVVTNAIVGW 352 (372)
Q Consensus 326 ~~i~~~~i~~-~~~i~~~~~i~~~~i~~ 352 (372)
++|.++-..+ +..|-+++.|...-+++
T Consensus 367 ~Iisgv~~~~~~~~vP~~~ci~~vpl~~ 394 (974)
T PRK13412 367 SIITGVPENSWNLDLPEGVCIDVVPVGD 394 (974)
T ss_pred cEEecccccccceecCCCcEEEEEEcCC
Confidence 7666664222 35556666665444433
No 243
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00011 Score=61.96 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=56.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECC--------CcEECCCCEECCCcEEe-ceEECCCCEECCCcEEEceEECCCCEECCC
Q 017417 289 NATIIGDVYVHPSAKIHPTAKIGP--------NVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (372)
Q Consensus 289 ~~~~~~~~~i~~~~~i~~~~~i~~--------~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (372)
...+.+.+.||.++.|..+++|++ .=.||++|.||.|++|- +-.||+++.||.+|++...+=.+.+++|-=
T Consensus 87 GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~~~tvvGvP 166 (194)
T COG1045 87 GVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVP 166 (194)
T ss_pred eEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCCceEccCCCCCceEecCc
Confidence 345556677777777777777773 24788889999988886 678899999999888887665556667777
Q ss_pred cEEcC
Q 017417 360 SRVQA 364 (372)
Q Consensus 360 ~~i~~ 364 (372)
+++-.
T Consensus 167 Arii~ 171 (194)
T COG1045 167 ARVIG 171 (194)
T ss_pred ceEec
Confidence 77654
No 244
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.75 E-value=0.0019 Score=62.31 Aligned_cols=182 Identities=18% Similarity=0.257 Sum_probs=104.9
Q ss_pred CCCeeEEEEeCCCCCCCccccCcccCCCCCcccC-CcchhhhhHhhcce----------EEEEcc-cchHHHHHHHhhcc
Q 017417 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR----------IYLVGF-YEEREFALYVSSIS 73 (372)
Q Consensus 6 ~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~-g~pli~~~l~~l~~----------i~vv~~-~~~~~i~~~~~~~~ 73 (372)
..++.+|+|||| .||||+- +.||.|+||. ++++++..++++.. ++|.++ ...++..++++++
T Consensus 54 ~~kvavl~LaGG--lGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~ky- 127 (420)
T PF01704_consen 54 LGKVAVLKLAGG--LGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKY- 127 (420)
T ss_dssp TTCEEEEEEEES--BSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHG-
T ss_pred hCCEEEEEEcCc--ccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHh-
Confidence 357899999999 9999987 7899999994 45888888777654 445444 5566788888763
Q ss_pred CCCCeeEEEecC-----------------C------c---ccChHHHHH--H---HHHHhhccCCCeEEEEcCCeeecCC
Q 017417 74 NELRIPVRYLRE-----------------D------K---PHGSAGALY--N---FRDLIMEDNPSHIFLLNCDVCCSFP 122 (372)
Q Consensus 74 ~~~~~~i~~~~~-----------------~------~---~~g~~~al~--~---~~~~l~~~~~~~vlv~~gD~i~~~~ 122 (372)
..+..++.+..| . . +-|.++-.. . .++.+....-+++.+.+.|.+...-
T Consensus 128 fg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~ 207 (420)
T PF01704_consen 128 FGLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVV 207 (420)
T ss_dssp CGSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT
T ss_pred cCCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCccccc
Confidence 222222221111 0 0 224443222 1 2344444445799999999954333
Q ss_pred hHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCC--ceeEeeecCC--------CcccCceeeeEEEeCHhhHH
Q 017417 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN--ELLHYTEKPE--------TFVSDLINCGVYVFTPDIFN 192 (372)
Q Consensus 123 l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~--~v~~i~ek~~--------~~~~~~~~~Giy~~~~~~~~ 192 (372)
=..++..+.+.+.++.+-+.+... ....-|.+... +| +|.++.+-|. .......++|--+|+-.+++
T Consensus 208 Dp~~lG~~~~~~~~~~~evv~Kt~-~dek~Gvl~~~--~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~ 284 (420)
T PF01704_consen 208 DPVFLGYMIEKNADFGMEVVPKTS-PDEKGGVLCRY--DGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLK 284 (420)
T ss_dssp -HHHHHHHHHTT-SEEEEEEE-CS-TTTSSEEEEEE--TTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHH
T ss_pred CHHHHHHHHhccchhheeeeecCC-CCCceeEEEEe--CCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHH
Confidence 334667777777777666555321 12233444432 34 4445554331 11234557888899988777
Q ss_pred Hhhh
Q 017417 193 AIQG 196 (372)
Q Consensus 193 ~l~~ 196 (372)
.+.+
T Consensus 285 ~~~~ 288 (420)
T PF01704_consen 285 RLLE 288 (420)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
No 245
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.75 E-value=0.0001 Score=75.83 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=23.8
Q ss_pred eEECCCCEECCCcEEE-ceEECCCCEECCCcEEcC
Q 017417 331 CIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 331 ~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 364 (372)
.+||++|.||.+|+|. ++.|++++.|++++.+..
T Consensus 161 i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~ 195 (695)
T TIGR02353 161 VTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQG 195 (695)
T ss_pred cEECCCcEECCCCEEcCCCEECCCCEECCCCEecC
Confidence 4677777777777775 777777777777777655
No 246
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.73 E-value=0.00015 Score=74.67 Aligned_cols=71 Identities=23% Similarity=0.227 Sum_probs=48.0
Q ss_pred CcEECCCCEECCCCEECC-CcEECCCCEECCCcEE------------eceEECCCCEECCCcEEE-ceEECCCCEECCCc
Q 017417 295 DVYVHPSAKIHPTAKIGP-NVSISANARIGAGVRL------------ISCIILDGVEIMENAVVT-NAIVGWKSSIGRWS 360 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~-~s~ig~~~~i~~~~~i------------~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~ 360 (372)
++.||+++.|........ .+.||++|.|+++|.| .++.||++|.||.+|+|. ++.||+++.||.++
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~S 676 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDS 676 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 344555555544322222 2466666666666665 357888888888888886 88888888888888
Q ss_pred EEcCC
Q 017417 361 RVQAS 365 (372)
Q Consensus 361 ~i~~~ 365 (372)
.+..+
T Consensus 677 vV~~g 681 (695)
T TIGR02353 677 LVMKG 681 (695)
T ss_pred EEcCC
Confidence 88664
No 247
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=97.72 E-value=9.6e-05 Score=65.17 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=10.1
Q ss_pred CCCCEECCCcEEE-ceEECCCCEE
Q 017417 334 LDGVEIMENAVVT-NAIVGWKSSI 356 (372)
Q Consensus 334 ~~~~~i~~~~~i~-~~~i~~~~~i 356 (372)
..|+.+|++|+|. +.+|+.++.|
T Consensus 198 veGV~vGdg~VV~aGv~I~~~tki 221 (271)
T COG2171 198 VEGVIVGDGCVVAAGVFITQDTKI 221 (271)
T ss_pred EeeeEeCCCcEEecceEEeCCcce
Confidence 3444444444444 4444444333
No 248
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.61 E-value=4.1e-05 Score=46.62 Aligned_cols=7 Identities=29% Similarity=0.259 Sum_probs=2.1
Q ss_pred EECCCCE
Q 017417 315 SISANAR 321 (372)
Q Consensus 315 ~ig~~~~ 321 (372)
.||++|.
T Consensus 21 ~Ig~~~~ 27 (36)
T PF00132_consen 21 VIGDNCV 27 (36)
T ss_dssp EE-TTEE
T ss_pred EECCCCE
Confidence 3333333
No 249
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.002 Score=61.59 Aligned_cols=179 Identities=21% Similarity=0.270 Sum_probs=103.9
Q ss_pred CCCeeEEEEeCCCCCCCccccCcccCCCCCcccC-CcchhhhhHhhcce----------EEEEcccchHHHHHHHhhc-c
Q 017417 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR----------IYLVGFYEEREFALYVSSI-S 73 (372)
Q Consensus 6 ~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~-g~pli~~~l~~l~~----------i~vv~~~~~~~i~~~~~~~-~ 73 (372)
..++.+|+|||| .|+||+- ..||.+++|. |+++++...+.++. .++.++...++-..++... .
T Consensus 103 ~~klAvl~LaGG--qGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y 177 (472)
T COG4284 103 LGKLAVLKLAGG--QGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDY 177 (472)
T ss_pred cCceEEEEecCC--ccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhh
Confidence 357899999999 9999998 7799999999 89999999887655 5665555443444444321 0
Q ss_pred CCC-CeeEEEecCC-----------------------cccChH---HHHHH--HHHHhhccCCCeEEEEcCCeee-cCCh
Q 017417 74 NEL-RIPVRYLRED-----------------------KPHGSA---GALYN--FRDLIMEDNPSHIFLLNCDVCC-SFPL 123 (372)
Q Consensus 74 ~~~-~~~i~~~~~~-----------------------~~~g~~---~al~~--~~~~l~~~~~~~vlv~~gD~i~-~~~l 123 (372)
..+ ...|.+..|. .+.|.+ .++.. .++.+....-+++.|.+.|.+. ..|+
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 000 0111111110 123332 34443 3344444445789999999954 3444
Q ss_pred HHHHHHHHhcCCceEEEEEecCCcccccceEEE-EcCCCCceeEeeecCCCc----------ccCcee-eeEEEeCHhhH
Q 017417 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELV-ADPDTNELLHYTEKPETF----------VSDLIN-CGVYVFTPDIF 191 (372)
Q Consensus 124 ~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~-~~~~~~~v~~i~ek~~~~----------~~~~~~-~Giy~~~~~~~ 191 (372)
. ++..+...+.+.++=+..-. .....-|.+. .+. .-||+.+.+-|... ....++ .++++++-..+
T Consensus 258 ~-~lg~~~~~~~e~~~e~t~Kt-~a~ekvG~Lv~~~g-~~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l 334 (472)
T COG4284 258 K-FLGFMAETNYEYLMETTDKT-KADEKVGILVTYDG-KLRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFL 334 (472)
T ss_pred H-HHHHHHhcCcceeEEEeecc-cccccceEEEEeCC-ceEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHH
Confidence 3 45666777777766555422 1223345544 664 46788887755321 112334 66777764444
Q ss_pred H
Q 017417 192 N 192 (372)
Q Consensus 192 ~ 192 (372)
.
T Consensus 335 ~ 335 (472)
T COG4284 335 K 335 (472)
T ss_pred H
Confidence 3
No 250
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00013 Score=62.35 Aligned_cols=67 Identities=30% Similarity=0.244 Sum_probs=46.3
Q ss_pred EECCCCEECCC--------CEECCCcEECCCCEECCCcEEe---------ceEECCCCEECCCcEEE-ceEECCCCEECC
Q 017417 297 YVHPSAKIHPT--------AKIGPNVSISANARIGAGVRLI---------SCIILDGVEIMENAVVT-NAIVGWKSSIGR 358 (372)
Q Consensus 297 ~i~~~~~i~~~--------~~i~~~s~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~ 358 (372)
-|+|.++||.| ++|++..+||.+|.|..++++. .=.|++||-||.+++|- +..||++++|++
T Consensus 150 dihpaa~ig~gilldhatgvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaA 229 (269)
T KOG4750|consen 150 DIHPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAA 229 (269)
T ss_pred cccchhhcccceeeccccceeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEec
Confidence 35555555543 5555556666666666665553 22788899999888877 888899999998
Q ss_pred CcEEc
Q 017417 359 WSRVQ 363 (372)
Q Consensus 359 ~~~i~ 363 (372)
|+.+.
T Consensus 230 GsvV~ 234 (269)
T KOG4750|consen 230 GSVVL 234 (269)
T ss_pred cceEE
Confidence 88764
No 251
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.53 E-value=7.2e-05 Score=45.53 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=12.5
Q ss_pred EECCCCEECCCcEEe-ceEECCCCEECCCcEE
Q 017417 315 SISANARIGAGVRLI-SCIILDGVEIMENAVV 345 (372)
Q Consensus 315 ~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 345 (372)
.||++|.|++++.|. ++.|+++|.|+++|.|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 344444444443332 2444444444444444
No 252
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.50 E-value=0.00062 Score=55.86 Aligned_cols=35 Identities=37% Similarity=0.530 Sum_probs=19.8
Q ss_pred CcEECCCCEECCCcEEe-ceEECCCCEECCCcEEEc
Q 017417 313 NVSISANARIGAGVRLI-SCIILDGVEIMENAVVTN 347 (372)
Q Consensus 313 ~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 347 (372)
++.||++|.||.++.|. ++.|+++|+|+.++.|..
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~ 108 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTK 108 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 45566666666665553 455555555555555554
No 253
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.46 E-value=0.0034 Score=61.29 Aligned_cols=183 Identities=17% Similarity=0.296 Sum_probs=109.3
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCccc---CCcchhhhhHhhcc----------------e----EEEEcc-cch
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACK----------------R----IYLVGF-YEE 62 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv---~g~pli~~~l~~l~----------------~----i~vv~~-~~~ 62 (372)
.++.+|+|||| .||||+- +.||.|++| .++++++...+++. . ++|.++ ...
T Consensus 115 gkvavvlLAGG--qGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 115 GKLAVVLLSGG--QGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred CCEEEEEeCCC--cccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 57789999999 9999987 889999987 57899999877641 1 455555 445
Q ss_pred HHHHHHHhhccCCCCe---eEEEecCC---------------------cccChHHHHHH-----HHHHhhccCCCeEEEE
Q 017417 63 REFALYVSSISNELRI---PVRYLRED---------------------KPHGSAGALYN-----FRDLIMEDNPSHIFLL 113 (372)
Q Consensus 63 ~~i~~~~~~~~~~~~~---~i~~~~~~---------------------~~~g~~~al~~-----~~~~l~~~~~~~vlv~ 113 (372)
+....++++. ..++. .|.+..|. .+.|.++-... .++.+....-+++.+.
T Consensus 190 ~~T~~ff~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~ 268 (493)
T PLN02435 190 EATRKFFESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCY 268 (493)
T ss_pred HHHHHHHHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEE
Confidence 6788888763 22332 23333221 23445433222 2334433344789999
Q ss_pred cCCeee-cCChHHHHHHHHhcCCceEEEEEecCCcccccceEEEEcCCCCc--eeEeeecCC------C-----cccCce
Q 017417 114 NCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE--LLHYTEKPE------T-----FVSDLI 179 (372)
Q Consensus 114 ~gD~i~-~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~--v~~i~ek~~------~-----~~~~~~ 179 (372)
..|.++ ...--.++-.+...+.++.+-+.+.. .....-|.+.....+|+ |..+.|-+. . ......
T Consensus 269 ~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~-~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~g 347 (493)
T PLN02435 269 GVDNALVRVADPTFLGYFIDKGVASAAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWS 347 (493)
T ss_pred ecccccccccCHHHHHHHHhcCCceEEEeeecC-CCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccchh
Confidence 999976 33334456666777777766543321 11233455543212344 444544221 1 123566
Q ss_pred eeeEEEeCHhhHHHhhh
Q 017417 180 NCGVYVFTPDIFNAIQG 196 (372)
Q Consensus 180 ~~Giy~~~~~~~~~l~~ 196 (372)
+++.++|+-++++.+.+
T Consensus 348 nI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 348 NVCLHMFTLDFLNQVAN 364 (493)
T ss_pred hHHHhhccHHHHHHHHH
Confidence 78889999999988753
No 254
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.44 E-value=0.0002 Score=42.89 Aligned_cols=30 Identities=37% Similarity=0.440 Sum_probs=11.0
Q ss_pred EECCCCEECCCcEEeceEECCCCEECCCcEE
Q 017417 315 SISANARIGAGVRLISCIILDGVEIMENAVV 345 (372)
Q Consensus 315 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i 345 (372)
.||++|.||.++.| +..|+++|.|++++.|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 34444444444443 3444444444444443
No 255
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.31 E-value=0.00027 Score=55.92 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=14.6
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCc
Q 017417 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGV 326 (372)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~ 326 (372)
+.||..+.|+++|++. .+.||+.+.+|+++
T Consensus 85 ~hiGdhVFieE~cVVn-AAqIgsyVh~Gkna 114 (184)
T KOG3121|consen 85 VHIGDHVFIEEECVVN-AAQIGSYVHLGKNA 114 (184)
T ss_pred eeecceEEEecceEee-hhhheeeeEeccce
Confidence 3455555555555554 44444444444443
No 256
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.11 E-value=0.0028 Score=54.45 Aligned_cols=35 Identities=29% Similarity=0.224 Sum_probs=22.5
Q ss_pred ceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcC
Q 017417 330 SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA 364 (372)
Q Consensus 330 ~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 364 (372)
+++||++|-||.+++|. +..||++++||+++.+..
T Consensus 124 ~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk 159 (190)
T COG0110 124 PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred CeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence 36666666666666666 666666666666666543
No 257
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.09 E-value=0.00074 Score=40.41 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=9.4
Q ss_pred ECCCCEECCCcEEEceEECCCCEECCCcEE
Q 017417 333 ILDGVEIMENAVVTNAIVGWKSSIGRWSRV 362 (372)
Q Consensus 333 i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 362 (372)
||++|.|+.+|.+ +..|++++.|++++.|
T Consensus 4 IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 4 IGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp E-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred ECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 3333333333333 3344444444444433
No 258
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.00 E-value=0.0015 Score=56.13 Aligned_cols=67 Identities=24% Similarity=0.344 Sum_probs=37.1
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEE-ceEECCCCEECCCcEEc
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (372)
....+++.||+++++. ..++|..+.+|+++.|.+.++..++.|+.+|.+. |.++..++.||.++.|.
T Consensus 17 ivv~gdViIG~nS~l~-------~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~ 84 (277)
T COG4801 17 IVVKGDVIIGKNSMLK-------YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIK 84 (277)
T ss_pred EEEeccEEEcccceee-------eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceee
Confidence 4445667777666654 3355555555555555555555555555555555 45554455555555443
No 259
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=96.99 E-value=0.016 Score=53.53 Aligned_cols=176 Identities=15% Similarity=0.194 Sum_probs=99.3
Q ss_pred eEEEEeCCCCCCCccccCcccCCCCCccc---CCcchhhhhHhhcce--------------EEEEcc-cchHHHHHHHhh
Q 017417 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR--------------IYLVGF-YEEREFALYVSS 71 (372)
Q Consensus 10 ~~vIlAaG~~~g~R~~~lt~~~pK~llpv---~g~pli~~~l~~l~~--------------i~vv~~-~~~~~i~~~~~~ 71 (372)
.+|+|||| .||||+- +.||.++|| .|+++++..++++.. ++|.++ ...++..+++++
T Consensus 2 a~vllaGG--~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~ 76 (315)
T cd06424 2 VFVLVAGG--LGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEE 76 (315)
T ss_pred EEEEecCC--CccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHH
Confidence 57899999 9999987 889999999 588999999877622 456555 445668888875
Q ss_pred ccCCCCe---eEEEecC------------------------CcccChHHHHHHH-----HHHhhccCCCeEEEEcCCeee
Q 017417 72 ISNELRI---PVRYLRE------------------------DKPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDVCC 119 (372)
Q Consensus 72 ~~~~~~~---~i~~~~~------------------------~~~~g~~~al~~~-----~~~l~~~~~~~vlv~~gD~i~ 119 (372)
. ..++. .|.+..| ..+.|.++-.... ++.+....-+++.+..-|.++
T Consensus 77 n-~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L 155 (315)
T cd06424 77 N-NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNAL 155 (315)
T ss_pred C-CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhh
Confidence 3 12221 1221111 1133443322221 334444445788888889887
Q ss_pred cCC-hHHHHHHHHhcCCceEEEEEecCCcccccceEEEE-cCCCCc--e--eEeeecC---------CC-------cccC
Q 017417 120 SFP-LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA-DPDTNE--L--LHYTEKP---------ET-------FVSD 177 (372)
Q Consensus 120 ~~~-l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~-~~~~~~--v--~~i~ek~---------~~-------~~~~ 177 (372)
... ...++-.+...+.++...+-+.. ....-|.+.. +..+|+ | .++.|-+ +. ....
T Consensus 156 ~~~adP~fiG~~~~~~~d~~~k~v~~~--~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f 233 (315)
T cd06424 156 AFKAIPAVLGVSATKSLDMNSLTVPRK--PKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPF 233 (315)
T ss_pred hhccChhhEEEEecCCCceEeEEEeCC--CCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccC
Confidence 332 33344445556666655444422 2345565542 212333 3 4444321 00 1122
Q ss_pred ceeeeEEEeCHhhHHH
Q 017417 178 LINCGVYVFTPDIFNA 193 (372)
Q Consensus 178 ~~~~Giy~~~~~~~~~ 193 (372)
..+++.++|+-+.+..
T Consensus 234 ~gNi~~~~f~l~~~~~ 249 (315)
T cd06424 234 PGNINQLVFSLGPYMD 249 (315)
T ss_pred CCeeeeEEEeHHHHHH
Confidence 6788999999555544
No 260
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=96.58 E-value=0.0095 Score=51.12 Aligned_cols=48 Identities=29% Similarity=0.410 Sum_probs=23.1
Q ss_pred cEECCCCEECCCcEEe-ceEECCCCEECCCcEEEceEECCCCEECCCcE
Q 017417 314 VSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSR 361 (372)
Q Consensus 314 s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~ 361 (372)
++||++|-||.+++|. +..||++++|+.++++...+-...+..|.-++
T Consensus 125 v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~iv~G~Pa~ 173 (190)
T COG0110 125 VTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPAR 173 (190)
T ss_pred eEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCccCCCeEEeCCcce
Confidence 5555555555555544 24555555555555555433333334444443
No 261
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.53 E-value=0.041 Score=55.54 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=83.0
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCccc---CCcchhhhhHhhcce-----------------EEEEcc-cchHHH
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR-----------------IYLVGF-YEEREF 65 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv---~g~pli~~~l~~l~~-----------------i~vv~~-~~~~~i 65 (372)
.++.+|+|||| .||||+- +.||.++|+ .|+++++..++++.. ++|.++ ...+..
T Consensus 127 ~kvavllLaGG--lGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T 201 (615)
T PLN02830 127 GNAAFVLVAGG--LGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHART 201 (615)
T ss_pred CcEEEEEecCC--cccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHH
Confidence 47889999999 9999986 779999997 478999999777421 456555 345567
Q ss_pred HHHHhhccCCCC---eeEEEecCC------------------------cccChHHHHHHH------HHHhhccCCCeEEE
Q 017417 66 ALYVSSISNELR---IPVRYLRED------------------------KPHGSAGALYNF------RDLIMEDNPSHIFL 112 (372)
Q Consensus 66 ~~~~~~~~~~~~---~~i~~~~~~------------------------~~~g~~~al~~~------~~~l~~~~~~~vlv 112 (372)
.+++++. ..++ ..|.+..|. .+.|.++ ++.+ ++.+....-+++.+
T Consensus 202 ~~~~~~n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGd-i~~aL~~sGlLd~l~~~G~~yi~v 279 (615)
T PLN02830 202 LKLLERN-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGD-VHALLYSSGLLDKWLSAGKKWVVF 279 (615)
T ss_pred HHHHHHC-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccH-HHHHHHHCCCHHHHHHcCCEEEEE
Confidence 7888763 2222 112221110 1233332 2222 33344444578999
Q ss_pred EcCCeeec-CChHHHHHHHHhcCCceEEEEEec
Q 017417 113 LNCDVCCS-FPLPEMLDAHRNYGGMGTILVIKV 144 (372)
Q Consensus 113 ~~gD~i~~-~~l~~~l~~~~~~~~~~~i~~~~~ 144 (372)
...|.++. ...-.++-.+...+.++.+-+.+.
T Consensus 280 ~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K 312 (615)
T PLN02830 280 FQDTNGLVFKAIPAALGVSATKGFDMNSLAVPR 312 (615)
T ss_pred EeccchhhhcccHHHhHHHHhcCCceEEEEEEC
Confidence 99999762 223667777777777777665553
No 262
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.53 E-value=0.0089 Score=51.56 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=47.7
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCcEEe-ceEECCCCEECCCcEEE-ceEECCCCEECCCcEEcCCC
Q 017417 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQASS 366 (372)
Q Consensus 297 ~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 366 (372)
+++....+++++.+. +-+++.+++|+..|++. |.+...+++||++++|. .-++..+--||+.+.|.+|-
T Consensus 35 V~g~~iivge~v~i~-Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ieggf 105 (277)
T COG4801 35 VVGEEIIVGERVRIY-GDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGGF 105 (277)
T ss_pred eeeeeEEeccCcEEe-eeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEecCe
Confidence 455566666666665 55555667776666665 56777788888888888 56666677788888887763
No 263
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.29 Score=46.15 Aligned_cols=131 Identities=17% Similarity=0.251 Sum_probs=75.8
Q ss_pred CCCeeEEEEeCCCCCCCccccCcccCCCCCcccCC-cchhhhhHhhcce----------EEEE-cccchHHHHHHHhhcc
Q 017417 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGG-QPMVHHPISACKR----------IYLV-GFYEEREFALYVSSIS 73 (372)
Q Consensus 6 ~~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g-~pli~~~l~~l~~----------i~vv-~~~~~~~i~~~~~~~~ 73 (372)
-.++.++=|-|| .|+-|+= ..||.+++|.+ .+.++-++.+... .++. ....+++....++.+.
T Consensus 101 L~KLavlKLNGG--lGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~ 175 (498)
T KOG2638|consen 101 LNKLAVLKLNGG--LGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA 175 (498)
T ss_pred hhheEEEEecCC--cCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc
Confidence 457888889999 9999987 77999999954 6888877665433 3444 3344555666665542
Q ss_pred CCCCeeEEEecC-------------------C-----c-ccCh---HHHHHHH--HHHhhccCCCeEEEEcCCeeec-CC
Q 017417 74 NELRIPVRYLRE-------------------D-----K-PHGS---AGALYNF--RDLIMEDNPSHIFLLNCDVCCS-FP 122 (372)
Q Consensus 74 ~~~~~~i~~~~~-------------------~-----~-~~g~---~~al~~~--~~~l~~~~~~~vlv~~gD~i~~-~~ 122 (372)
.. .+.+....| + + +-|. .+|+++. ++.+=.+..++++|.+.|.+-. .|
T Consensus 176 ~~-kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvD 254 (498)
T KOG2638|consen 176 GS-KVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVD 254 (498)
T ss_pred CC-ceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceee
Confidence 21 222211111 0 0 1222 2334321 2333233447999999999974 45
Q ss_pred hHHHHHHHHhcCCceEEEEEe
Q 017417 123 LPEMLDAHRNYGGMGTILVIK 143 (372)
Q Consensus 123 l~~~l~~~~~~~~~~~i~~~~ 143 (372)
|. +++...+.+....|=+++
T Consensus 255 L~-ILn~~i~~~~ey~MEvTd 274 (498)
T KOG2638|consen 255 LN-ILNHVINNNIEYLMEVTD 274 (498)
T ss_pred HH-HHHHHhcCCCceEEEecc
Confidence 43 455555556666665554
No 264
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.34 E-value=0.013 Score=46.96 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=9.4
Q ss_pred CCcEECCCCEECCCCEEC
Q 017417 294 GDVYVHPSAKIHPTAKIG 311 (372)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~ 311 (372)
++.+||++..|.+.+.|.
T Consensus 46 GPI~iGEnniiEEyA~i~ 63 (190)
T KOG4042|consen 46 GPIYIGENNIIEEYAVIR 63 (190)
T ss_pred CCEEEccCchhhhHHHHH
Confidence 345566666655444443
No 265
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=95.17 E-value=0.052 Score=46.80 Aligned_cols=58 Identities=28% Similarity=0.355 Sum_probs=34.0
Q ss_pred cEEcCCcEECCCCEECCCCEECC--------CcEECCCCEECCCcEEe-ceEECCCCEECCCcEEEc
Q 017417 290 ATIIGDVYVHPSAKIHPTAKIGP--------NVSISANARIGAGVRLI-SCIILDGVEIMENAVVTN 347 (372)
Q Consensus 290 ~~~~~~~~i~~~~~i~~~~~i~~--------~s~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 347 (372)
..+.+.+++|.++.+..++.+++ .=.||+||-||.+++|- +..||+|++|+.|+++..
T Consensus 169 vvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~k 235 (269)
T KOG4750|consen 169 VVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLK 235 (269)
T ss_pred eeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEeccceEEe
Confidence 33444555556666666666652 23677777777776654 456666666666665553
No 266
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.16 E-value=0.23 Score=39.55 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=53.8
Q ss_pred cchhhhhHhhcce-------EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEE
Q 017417 41 QPMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLL 113 (372)
Q Consensus 41 ~pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~ 113 (372)
.+++.++++.+.. ++++.....+.....+...... ...+.........|.+.++..+....+. +.++++
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~---d~v~~~ 84 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAARG---EYILFL 84 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhcC---CEEEEE
Confidence 3778888777644 5555444444455555443221 1223344445567889999988888743 689999
Q ss_pred cCCeeecCC-hHHHHHHHH
Q 017417 114 NCDVCCSFP-LPEMLDAHR 131 (372)
Q Consensus 114 ~gD~i~~~~-l~~~l~~~~ 131 (372)
++|.++..+ +..++..+.
T Consensus 85 d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 85 DADDLLLPDWLERLVAELL 103 (156)
T ss_pred CCCCccCccHHHHHHHHHh
Confidence 999998665 555534433
No 267
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=95.13 E-value=0.15 Score=41.62 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=63.1
Q ss_pred cccCCc-chhhhhHhhcce-------EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhccCC
Q 017417 36 FPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNP 107 (372)
Q Consensus 36 lpv~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~ 107 (372)
+|.-|+ ..|..+|+.+.. |+|+-....+...+.+.+..+ ....+.++..+...|.+.++..+.+....
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~~--- 79 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAKG--- 79 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH--S---
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-cccccccccccccccccccccccccccce---
Confidence 344444 455555554443 555544332333444444322 23456666666556889999999998776
Q ss_pred CeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEEEe
Q 017417 108 SHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVIK 143 (372)
Q Consensus 108 ~~vlv~~gD~i~~~~-l~~~l~~~~~~~~~~~i~~~~ 143 (372)
+++++++.|..+..+ +..+++.+.+.+.++.+....
T Consensus 80 ~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 80 EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 589999999998665 888988888866655555443
No 268
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=94.71 E-value=0.082 Score=45.51 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=54.0
Q ss_pred cchhhhhHhhcce-----EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcC
Q 017417 41 QPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNC 115 (372)
Q Consensus 41 ~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~g 115 (372)
+|||+|+++.+.. ++|++.. +++..+... +++ .++.+.. .|...++..+.+++..+ .+.++++.|
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~~v--~~i~~~~-~G~~~si~~al~~~~~~-~~~vlv~~~ 99 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN----LGA--PVLRDPG-PGLNNALNAALAEAREP-GGAVLILMA 99 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----cCC--EEEecCC-CCHHHHHHHHHHHhhcc-CCeEEEEeC
Confidence 3999999987765 5666543 234444332 233 3444443 38999999999887532 247999999
Q ss_pred Ceee--cCChHHHHHHHH
Q 017417 116 DVCC--SFPLPEMLDAHR 131 (372)
Q Consensus 116 D~i~--~~~l~~~l~~~~ 131 (372)
|+++ ...++++++.+.
T Consensus 100 D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 100 DLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCHHHHHHHHHhcc
Confidence 9997 456888887653
No 269
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=94.28 E-value=0.086 Score=51.10 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=36.8
Q ss_pred EECCCCEECCCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECC
Q 017417 303 KIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGW 352 (372)
Q Consensus 303 ~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~ 352 (372)
.+.+++.|. ||+|..++.||+++.|.+|.|+.++.||++|.|.++-+..
T Consensus 275 ~~~~~~~Vi-nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 275 DSEASSCVI-NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred ccCCCeeEE-EeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccc
Confidence 344555554 8888888888888888888888888888888888774443
No 270
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=93.01 E-value=2 Score=39.04 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=41.7
Q ss_pred eEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 017417 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (372)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~ 134 (372)
.+.++..+...|.+.+.-.+++.......+++++++.|.....+ +..+++...+.+
T Consensus 46 ~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 102 (281)
T TIGR01556 46 KIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAEN 102 (281)
T ss_pred CeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcC
Confidence 46666666678999999999888643345799999999998544 777777765543
No 271
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=92.00 E-value=1.1 Score=36.41 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=53.8
Q ss_pred cccCCc-chhhhhHhhcce-------EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhccCC
Q 017417 36 FPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNP 107 (372)
Q Consensus 36 lpv~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~ 107 (372)
+|.-++ ..|..+|+.+.. ++|+-....+...+.+..........+.+.......|.+.+...+++..+.
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~--- 79 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKG--- 79 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCC---
Confidence 344443 444444544433 555543333323333333222211234445555667888998888887744
Q ss_pred CeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 017417 108 SHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (372)
Q Consensus 108 ~~vlv~~gD~i~~~~-l~~~l~~~~~~~ 134 (372)
++++++++|.....+ +..++..+.+.+
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 107 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFADP 107 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhccCC
Confidence 689999999988544 777755554443
No 272
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.60 E-value=1.7 Score=35.26 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=55.9
Q ss_pred ccCCc-chhhhhHhhcce-------EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhccCCC
Q 017417 37 PLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (372)
Q Consensus 37 pv~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~ 108 (372)
|.-++ ..+..+++.+.. ++|+-....+...+.+..... .+.++......|.+.++..+.+..+. +
T Consensus 4 ~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~~~g~~~a~n~~~~~~~~---~ 76 (166)
T cd04186 4 VNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGENLGFGAGNNQGIREAKG---D 76 (166)
T ss_pred EecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCCCcChHHHhhHHHhhCCC---C
Confidence 33343 566666666543 555544333334444443221 34555555567889999988888743 6
Q ss_pred eEEEEcCCeeecCC-hHHHHHHHHhcC
Q 017417 109 HIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (372)
Q Consensus 109 ~vlv~~gD~i~~~~-l~~~l~~~~~~~ 134 (372)
+++++..|..+..+ +..+++.+.+.+
T Consensus 77 ~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 77 YVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred EEEEECCCcEECccHHHHHHHHHHhCC
Confidence 89999999988554 777777655543
No 273
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=91.46 E-value=1.4 Score=37.48 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=56.1
Q ss_pred cccCCcc---hhhhhHhhcce-------EEEEcccc-hHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhc
Q 017417 36 FPLGGQP---MVHHPISACKR-------IYLVGFYE-EREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIME 104 (372)
Q Consensus 36 lpv~g~p---li~~~l~~l~~-------i~vv~~~~-~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~ 104 (372)
+|+.+.. .|+.+|+.+.. ++|+-... .+...+.+..+..+.. +.++......|.+.+...+....+.
T Consensus 4 ip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~g 81 (201)
T cd04195 4 MSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCTY 81 (201)
T ss_pred EEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcCC
Confidence 4565552 67777776644 55543322 2233333333322222 5555544457888998888876543
Q ss_pred cCCCeEEEEcCCeeecC-ChHHHHHHHHhc
Q 017417 105 DNPSHIFLLNCDVCCSF-PLPEMLDAHRNY 133 (372)
Q Consensus 105 ~~~~~vlv~~gD~i~~~-~l~~~l~~~~~~ 133 (372)
++++++++|..... -++.+++...+.
T Consensus 82 ---d~i~~lD~Dd~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 82 ---DWVARMDTDDISLPDRFEKQLDFIEKN 108 (201)
T ss_pred ---CEEEEeCCccccCcHHHHHHHHHHHhC
Confidence 68999999998754 478888876543
No 274
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=89.63 E-value=3.1 Score=36.83 Aligned_cols=61 Identities=8% Similarity=0.017 Sum_probs=42.3
Q ss_pred eeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEE
Q 017417 78 IPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILV 141 (372)
Q Consensus 78 ~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~~~~i~~ 141 (372)
.++.........|-+.++..+.+.... ++++++++|.....+ +.+++..+.+.+.++.++.
T Consensus 59 ~~i~~~~~~~~~G~~~a~n~g~~~a~g---d~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 59 FRVVVVPPSQPRTKPKACNYALAFARG---EYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHHhcCC---CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 345555444556788888888887544 689999999988554 7888887765444555443
No 275
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=89.58 E-value=3.7 Score=36.32 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=55.1
Q ss_pred CCcccCCc-chhhhhHhhcce---------EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhh
Q 017417 34 PLFPLGGQ-PMVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103 (372)
Q Consensus 34 ~llpv~g~-pli~~~l~~l~~---------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~ 103 (372)
-++|..|. ..|..+|+.+.. ++|+-....+...+.+...... .+.++......|-+.++..+.+...
T Consensus 33 Vvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~~~g~~~a~n~gi~~a~ 109 (251)
T cd06439 33 IIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPERRGKAAALNRALALAT 109 (251)
T ss_pred EEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCCCCChHHHHHHHHHHcC
Confidence 44555554 344444444321 4554333333333444443222 3445555555788888888888776
Q ss_pred ccCCCeEEEEcCCeeecCC-hHHHHHHHHh
Q 017417 104 EDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (372)
Q Consensus 104 ~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~ 132 (372)
. ++++++++|.....+ +.++++...+
T Consensus 110 ~---d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 110 G---EIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred C---CEEEEEccccCcCHHHHHHHHHHhcC
Confidence 4 689999999998554 7888877643
No 276
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.31 E-value=3.8 Score=34.87 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=50.8
Q ss_pred chhhhhHhhcce-------EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEc
Q 017417 42 PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114 (372)
Q Consensus 42 pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~ 114 (372)
..|..+|+.+.+ |+|+-....+.....+........ +.++......|.+.++-.+++.......+.+++++
T Consensus 10 ~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld 87 (202)
T cd04185 10 DLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMD 87 (202)
T ss_pred HHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCCEEEEeC
Confidence 344555555433 555533333334444544333222 45555555678777777777665332347899999
Q ss_pred CCeeecCC-hHHHHHHHH
Q 017417 115 CDVCCSFP-LPEMLDAHR 131 (372)
Q Consensus 115 gD~i~~~~-l~~~l~~~~ 131 (372)
.|...+.+ +..+++...
T Consensus 88 ~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 88 DDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCCCcChHHHHHHHHHHh
Confidence 99998655 666666654
No 277
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.96 E-value=3.1 Score=35.60 Aligned_cols=51 Identities=18% Similarity=0.151 Sum_probs=35.7
Q ss_pred eEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecC-ChHHHHHHHHh
Q 017417 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF-PLPEMLDAHRN 132 (372)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~-~l~~~l~~~~~ 132 (372)
.+.+.......|.+.++..+....+. +++++++.|..+.. .+..+++...+
T Consensus 55 ~~~~~~~~~~~G~~~~~n~g~~~~~g---~~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 55 IIILIRNGKNLGVARNFESLLQAADG---DYVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred eEEEEeCCCCccHHHHHHHHHHhCCC---CEEEEECCCcccChhHHHHHHHHHhc
Confidence 44555555567888888887665443 68999999988754 48888876333
No 278
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=86.57 E-value=3.5 Score=35.47 Aligned_cols=59 Identities=20% Similarity=0.139 Sum_probs=42.9
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeec-CChHHHHHHHHhcCCceEEEE
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGGMGTILV 141 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~-~~l~~~l~~~~~~~~~~~i~~ 141 (372)
+.++......|.+.++..+...... ++++++++|..++ ..+..+++...+.+.++++..
T Consensus 59 i~~i~~~~n~G~~~a~~~g~~~a~g---d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 59 IRVLTLPKNRGKGGAVRAGMLAARG---DYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred EEEEEcccCCCcHHHHHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 4555555567899999998887765 6899999999884 458888887555555555543
No 279
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=86.50 E-value=18 Score=31.47 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=34.8
Q ss_pred eEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHH
Q 017417 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEML 127 (372)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l 127 (372)
.+.++..+...|-+.+...+.+.....+.++++++++|...+.+ +..++
T Consensus 48 ~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 48 KIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred cEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHH
Confidence 34555555567888888888887654234689999999998554 67764
No 280
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=86.38 E-value=4.9 Score=34.71 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=40.8
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecC-ChHHHHHHHHhcCCceEEE
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF-PLPEMLDAHRNYGGMGTIL 140 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~-~l~~~l~~~~~~~~~~~i~ 140 (372)
+.++......|.+.++..++..... ++++++++|..... .+..+++...+.+.+++..
T Consensus 55 i~~~~~~~n~G~~~a~n~g~~~a~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 55 VRLIVRPGKRGLGSAYIEGFKAARG---DVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred eEEEecCCCCChHHHHHHHHHHcCC---CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 3455555667888999888887665 58999999988744 4788888755555554433
No 281
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=86.23 E-value=7.8 Score=32.90 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=61.2
Q ss_pred chhhhhHhhcce-------EEEEcc---cchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEE
Q 017417 42 PMVHHPISACKR-------IYLVGF---YEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIF 111 (372)
Q Consensus 42 pli~~~l~~l~~-------i~vv~~---~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vl 111 (372)
|++-|.+..... |+++-. +.-.++.+.++..... -++........+|.+.|...++.+... ++++
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~--d~i~l~pR~~klGLgtAy~hgl~~a~g---~fiv 93 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGE--DNILLKPRTKKLGLGTAYIHGLKHATG---DFIV 93 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCC--CcEEEEeccCcccchHHHHhhhhhccC---CeEE
Confidence 566666554322 555522 2223455555532221 335555555668999999999998766 5899
Q ss_pred EEcCCeee-cCChHHHHHHHHhcCCceEEEEE
Q 017417 112 LLNCDVCC-SFPLPEMLDAHRNYGGMGTILVI 142 (372)
Q Consensus 112 v~~gD~i~-~~~l~~~l~~~~~~~~~~~i~~~ 142 (372)
++++|+-- +.-+.++++...+.+.|++..+.
T Consensus 94 iMDaDlsHhPk~ipe~i~lq~~~~~div~GTR 125 (238)
T KOG2978|consen 94 IMDADLSHHPKFIPEFIRLQKEGNYDIVLGTR 125 (238)
T ss_pred EEeCccCCCchhHHHHHHHhhccCcceeeeee
Confidence 99999876 44588888887777667766554
No 282
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=85.74 E-value=1.6 Score=38.02 Aligned_cols=37 Identities=24% Similarity=0.176 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHH
Q 017417 91 SAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAH 130 (372)
Q Consensus 91 ~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~ 130 (372)
...++..++..... +.+++++.|.+.+.+ +..+++.+
T Consensus 74 k~~a~n~~~~~~~~---d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 74 KARALNEALAAARG---DYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp HHHHHHHHHHH------SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---CEEEEECCCcEECHHHHHHHHHHH
Confidence 45667777776653 699999999998554 78888877
No 283
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=85.59 E-value=4.5 Score=33.67 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=41.6
Q ss_pred EEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEE
Q 017417 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILV 141 (372)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~~~~i~~ 141 (372)
.++..+...|.+.++..+.+.... ++++++++|.....+ +..++....+.+.++.+..
T Consensus 57 ~~~~~~~n~G~~~a~n~g~~~a~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 57 RVIRLSRNFGKGAAVRAGFKAARG---DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred EEEEccCCCCccHHHHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 445555567888999888887765 689999999877444 8888887555555555444
No 284
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=84.69 E-value=6.6 Score=36.05 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=40.3
Q ss_pred eEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcCC
Q 017417 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGG 135 (372)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~ 135 (372)
.+.++..+...|.+.+.-.++..... ++++++++|.....+ +..+++...+.+.
T Consensus 59 ~v~vi~~~~n~G~~~a~N~g~~~A~g---d~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 59 KVKVLRLKKREGLIRARIAGARAATG---DVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHccC---CEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 45666655667888888888877554 689999999988544 8888888766544
No 285
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=84.66 E-value=6.3 Score=34.55 Aligned_cols=81 Identities=11% Similarity=0.008 Sum_probs=47.1
Q ss_pred EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHh
Q 017417 54 IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (372)
Q Consensus 54 i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~ 132 (372)
|+|+-....+...+.++....+ ...+.++... ..|.+.++..+++..+. ++++++++|.....+ ++++++.+.+
T Consensus 34 vivvd~~s~d~~~~~~~~~~~~-~~~v~~i~~~-~~~~~~a~N~g~~~a~~---d~v~~lD~D~~~~~~~l~~~~~~~~~ 108 (249)
T cd02525 34 IIVVDGGSTDGTREIVQEYAAK-DPRIRLIDNP-KRIQSAGLNIGIRNSRG---DIIIRVDAHAVYPKDYILELVEALKR 108 (249)
T ss_pred EEEEeCCCCccHHHHHHHHHhc-CCeEEEEeCC-CCCchHHHHHHHHHhCC---CEEEEECCCccCCHHHHHHHHHHHhc
Confidence 5555333333334444433222 2235555433 35667777777777643 689999999987544 8888876665
Q ss_pred cCCceEE
Q 017417 133 YGGMGTI 139 (372)
Q Consensus 133 ~~~~~~i 139 (372)
.+.++..
T Consensus 109 ~~~~~v~ 115 (249)
T cd02525 109 TGADNVG 115 (249)
T ss_pred CCCCEEe
Confidence 5544433
No 286
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=84.31 E-value=1.6 Score=46.55 Aligned_cols=52 Identities=10% Similarity=0.197 Sum_probs=40.0
Q ss_pred CcEECCCCEECCCcE-EeceEECCCCEECCCcEEEceEE-CCCCEECCCcEEcC
Q 017417 313 NVSISANARIGAGVR-LISCIILDGVEIMENAVVTNAIV-GWKSSIGRWSRVQA 364 (372)
Q Consensus 313 ~s~ig~~~~i~~~~~-i~~~~i~~~~~i~~~~~i~~~~i-~~~~~i~~~~~i~~ 364 (372)
||++...+.+++++. |.+|.|+.++.||++|.|.++-. .-+..|.+++.|+.
T Consensus 336 ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~ 389 (974)
T PRK13412 336 NAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDV 389 (974)
T ss_pred eeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEEE
Confidence 888888888888854 77889999999999998887752 22466777777653
No 287
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=83.81 E-value=8.1 Score=32.83 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHH
Q 017417 93 GALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAH 130 (372)
Q Consensus 93 ~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~ 130 (372)
.++..+.+.... +.++++++|...+.+ +..+++..
T Consensus 76 ~~~n~g~~~a~~---d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 76 NNLIKGYEEARY---DILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHHHhCCC---CEEEEECCCceEChhHHHHHHHHh
Confidence 445455554433 689999999988554 77777654
No 288
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=83.78 E-value=2.2 Score=41.33 Aligned_cols=40 Identities=30% Similarity=0.561 Sum_probs=33.6
Q ss_pred CCeeEEEEeCCCCCCCccccCcccCCCCCcccCCc---chhhhhHhhc
Q 017417 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ---PMVHHPISAC 51 (372)
Q Consensus 7 ~~~~~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~---pli~~~l~~l 51 (372)
.+..++++||| .|||++. ..||.+.|++.. .++++..+.+
T Consensus 96 ~~~a~~llaGg--qgtRLg~---~~pkg~~~~G~~~~~slf~~qae~i 138 (477)
T KOG2388|consen 96 GKVAVVLLAGG--QGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERI 138 (477)
T ss_pred CcceEEEeccC--ceeeecc---CCCcceeecCCccccchhhhhHHHH
Confidence 46789999999 9999998 789999999765 5888876654
No 289
>PRK11204 N-glycosyltransferase; Provisional
Probab=83.71 E-value=5.5 Score=38.59 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=56.3
Q ss_pred CcccCCc-chhhhhHhhcce-------EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhccC
Q 017417 35 LFPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDN 106 (372)
Q Consensus 35 llpv~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~ 106 (372)
++|..|. ..|..+++.+.. |+|+.....+...+.+++...+. ..+.++......|-+.++..+.+..+.
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~-~~v~~i~~~~n~Gka~aln~g~~~a~~-- 135 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQI-PRLRVIHLAENQGKANALNTGAAAARS-- 135 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CcEEEEEcCCCCCHHHHHHHHHHHcCC--
Confidence 4455554 556666665543 55554332222223332221111 235555544457888888888886543
Q ss_pred CCeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 017417 107 PSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (372)
Q Consensus 107 ~~~vlv~~gD~i~~~~-l~~~l~~~~~~~ 134 (372)
|.++++++|.....+ +..+++.+.+.+
T Consensus 136 -d~i~~lDaD~~~~~d~L~~l~~~~~~~~ 163 (420)
T PRK11204 136 -EYLVCIDGDALLDPDAAAYMVEHFLHNP 163 (420)
T ss_pred -CEEEEECCCCCCChhHHHHHHHHHHhCC
Confidence 689999999988555 788887775443
No 290
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=83.70 E-value=6.8 Score=32.64 Aligned_cols=58 Identities=22% Similarity=0.203 Sum_probs=39.7
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEE
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILV 141 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~~~~i~~ 141 (372)
+.++......|.+.++..+...... ++++++++|.....+ +..+++. .+.+.++++..
T Consensus 57 i~~i~~~~n~G~~~a~n~g~~~a~~---d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g~ 115 (181)
T cd04187 57 VKVIRLSRNFGQQAALLAGLDHARG---DAVITMDADLQDPPELIPEMLAK-WEEGYDVVYGV 115 (181)
T ss_pred EEEEEecCCCCcHHHHHHHHHhcCC---CEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEEE
Confidence 4455444557888999888887654 689999999988544 7888776 34444444433
No 291
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=83.39 E-value=5.1 Score=35.48 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=40.7
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecC-ChHHHHHHHHhcCCceEEE
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF-PLPEMLDAHRNYGGMGTIL 140 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~-~l~~~l~~~~~~~~~~~i~ 140 (372)
+..+......|.+.++..+...... ++++++++|...+. .+..+++...+.+.+++..
T Consensus 70 v~~~~~~~n~G~~~a~n~g~~~a~g---~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 70 ILLRPRPGKLGLGTAYIHGLKHASG---DFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred EEEEecCCCCCHHHHHHHHHHHcCC---CEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 4444444557888888888876554 68999999998744 4788888776656655444
No 292
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=82.83 E-value=5.1 Score=35.06 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=34.5
Q ss_pred eEEEecCCcccCh-HHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHH
Q 017417 79 PVRYLREDKPHGS-AGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (372)
Q Consensus 79 ~i~~~~~~~~~g~-~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~ 131 (372)
.+.++......|. ++++..+.+..... .+.++++++|...+.+ +..++....
T Consensus 57 ~i~~i~~~~~~G~~~~a~n~g~~~a~~~-~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 57 RFRFFHVEPLPGAKAGALNYALERTAPD-AEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred cEEEEEcCCCCCCchHHHHHHHHhcCCC-CCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 3444443333463 77888887776421 3689999999988555 788887764
No 293
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=82.45 E-value=28 Score=32.04 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=45.0
Q ss_pred eEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEE
Q 017417 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILV 141 (372)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~~~~i~~ 141 (372)
.+.++..+...|-+++.-.+.........+++++++-|++...+ +.++++.+.+.+..+.+..
T Consensus 57 ~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~ 120 (305)
T COG1216 57 NVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGP 120 (305)
T ss_pred cEEEEEcCCCccchhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeee
Confidence 46677777778888888877776544322279999999888554 8999999888765444443
No 294
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=80.74 E-value=8.2 Score=36.13 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=39.5
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeec-CChHHHHHHHHhcCCceEE
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGGMGTI 139 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~-~~l~~~l~~~~~~~~~~~i 139 (372)
+..+......|.+.|+..+.+..+. +.++++++|.-.+ .++.++++... ++.|++.
T Consensus 67 v~~i~~~~n~G~~~A~~~G~~~A~g---d~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV~ 123 (325)
T PRK10714 67 IVAILLNRNYGQHSAIMAGFSHVTG---DLIITLDADLQNPPEEIPRLVAKAD-EGYDVVG 123 (325)
T ss_pred EEEEEeCCCCCHHHHHHHHHHhCCC---CEEEEECCCCCCCHHHHHHHHHHHH-hhCCEEE
Confidence 4333334457888999988887644 6899999999884 56888888765 3456543
No 295
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=80.31 E-value=11 Score=31.64 Aligned_cols=85 Identities=13% Similarity=0.056 Sum_probs=49.1
Q ss_pred chhhhhHhhcce-------EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEc
Q 017417 42 PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114 (372)
Q Consensus 42 pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~ 114 (372)
..|+.+|+.+.. |+|+-....+...+.+...... +.++......|.+.++..+++..+. +++++++
T Consensus 11 ~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~~a~~---~~v~~ld 83 (202)
T cd06433 11 ETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK----ITYWISEPDKGIYDAMNKGIALATG---DIIGFLN 83 (202)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh----cEEEEecCCcCHHHHHHHHHHHcCC---CEEEEeC
Confidence 345555555433 5665333233334444433221 2223334456888888888887654 6899999
Q ss_pred CCeeec-CChHHHHHHHHhc
Q 017417 115 CDVCCS-FPLPEMLDAHRNY 133 (372)
Q Consensus 115 gD~i~~-~~l~~~l~~~~~~ 133 (372)
+|.... ..+..++......
T Consensus 84 ~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 84 SDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred CCcccCchHHHHHHHHHHhC
Confidence 999874 4577777554443
No 296
>PRK10073 putative glycosyl transferase; Provisional
Probab=80.28 E-value=11 Score=35.25 Aligned_cols=57 Identities=11% Similarity=-0.054 Sum_probs=40.1
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEE
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTIL 140 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~~~~i~ 140 (372)
+.++.+. ..|.+.+.-.+++.... ++++++++|..+..+ ++.+++...+.+.++++.
T Consensus 63 i~vi~~~-n~G~~~arN~gl~~a~g---~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 63 VRLLHQA-NAGVSVARNTGLAVATG---KYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred EEEEECC-CCChHHHHHHHHHhCCC---CEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 4455443 46888888888887655 689999999887544 778887766666665443
No 297
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=80.06 E-value=10 Score=32.67 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=31.6
Q ss_pred ccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcCC
Q 017417 88 PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGG 135 (372)
Q Consensus 88 ~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~ 135 (372)
..|...++..+...... +.++++++|.....+ ++++++.+.+.+.
T Consensus 67 ~~g~~~a~n~g~~~~~~---d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 67 ISGKKNALTTAIKAAKG---DWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred cchhHHHHHHHHHHhcC---CEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 35666677666665543 689999999988554 7888886655443
No 298
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=77.82 E-value=22 Score=30.73 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=42.6
Q ss_pred EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccC-hHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHH
Q 017417 54 IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHG-SAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (372)
Q Consensus 54 i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g-~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~ 131 (372)
|+|+-....+...+.+.....+. .+.++......| .+.++..+++..+. +++++++.|...+.+ +..+++...
T Consensus 36 iivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n~~~~~a~~---d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (234)
T cd06421 36 VYVLDDGRRPELRALAAELGVEY--GYRYLTRPDNRHAKAGNLNNALAHTTG---DFVAILDADHVPTPDFLRRTLGYFL 110 (234)
T ss_pred EEEEcCCCchhHHHHHHHhhccc--CceEEEeCCCCCCcHHHHHHHHHhCCC---CEEEEEccccCcCccHHHHHHHHHh
Confidence 55554444444555555443322 223332222233 45666677776543 689999999998655 777777765
Q ss_pred h
Q 017417 132 N 132 (372)
Q Consensus 132 ~ 132 (372)
+
T Consensus 111 ~ 111 (234)
T cd06421 111 D 111 (234)
T ss_pred c
Confidence 4
No 299
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=77.66 E-value=10 Score=37.11 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=54.6
Q ss_pred CCcccCCc-chhhhhHhhcce-------EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhcc
Q 017417 34 PLFPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMED 105 (372)
Q Consensus 34 ~llpv~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~ 105 (372)
-++|..|. ..+..+++.+.+ |+|+.....+...+.+.+...+. ..+.++......|-+.++..+....+.
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~-~~v~vv~~~~n~Gka~AlN~gl~~a~~- 156 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAED-PRLRVIHLAHNQGKAIALRMGAAAARS- 156 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CCEEEEEeCCCCCHHHHHHHHHHhCCC-
Confidence 35566665 456666666543 55554332222222222211111 123344333446778888888776443
Q ss_pred CCCeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 017417 106 NPSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (372)
Q Consensus 106 ~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~ 134 (372)
|.++++++|.+.+.+ +..+++.+.+.+
T Consensus 157 --d~iv~lDAD~~~~~d~L~~lv~~~~~~~ 184 (444)
T PRK14583 157 --EYLVCIDGDALLDKNAVPYLVAPLIANP 184 (444)
T ss_pred --CEEEEECCCCCcCHHHHHHHHHHHHhCC
Confidence 789999999998655 777877665543
No 300
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=77.55 E-value=11 Score=31.28 Aligned_cols=86 Identities=8% Similarity=0.099 Sum_probs=45.9
Q ss_pred chhhhhHhhcce-------EEEEcccchHHHHHHHhhccCCCCeeEEEec-CCcccChHHHHHHHHHHhhccCCCeEEEE
Q 017417 42 PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLL 113 (372)
Q Consensus 42 pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~-~~~~~g~~~al~~~~~~l~~~~~~~vlv~ 113 (372)
..+..+|+.+.. |+|+-....+...+.+.........++..+. .+...|.+.++..+.+.... ++++++
T Consensus 10 ~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g---~~i~~l 86 (182)
T cd06420 10 EALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKG---DYLIFI 86 (182)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcC---CEEEEE
Confidence 345555555532 5565443333333444433222222333332 22234556666666766543 689999
Q ss_pred cCCeeecCC-hHHHHHHH
Q 017417 114 NCDVCCSFP-LPEMLDAH 130 (372)
Q Consensus 114 ~gD~i~~~~-l~~~l~~~ 130 (372)
++|.....+ +..+++.+
T Consensus 87 D~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 87 DGDCIPHPDFIADHIELA 104 (182)
T ss_pred cCCcccCHHHHHHHHHHh
Confidence 999987554 67776655
No 301
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=76.59 E-value=17 Score=30.70 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=36.2
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHh
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~ 132 (372)
+.++......|.+.++..+...... +++++++.|.....+ +..+++.+.+
T Consensus 60 ~~~~~~~~~~g~~~a~n~g~~~a~~---d~i~~ld~D~~~~~~~l~~~~~~~~~ 110 (202)
T cd04184 60 IKVVFREENGGISAATNSALELATG---EFVALLDHDDELAPHALYEVVKALNE 110 (202)
T ss_pred EEEEEcccCCCHHHHHHHHHHhhcC---CEEEEECCCCcCChHHHHHHHHHHHh
Confidence 4444445557888888888887654 689999999988554 7888887633
No 302
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=76.52 E-value=37 Score=28.26 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=33.5
Q ss_pred CcccChHHHHHHHHHHhh--ccCCCeEEEEcCCeeecCC-hHHHHHHHHh
Q 017417 86 DKPHGSAGALYNFRDLIM--EDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (372)
Q Consensus 86 ~~~~g~~~al~~~~~~l~--~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~ 132 (372)
....|-+.++..+..... ..+.+.++++++|...+.+ +..+++.+.+
T Consensus 59 ~~~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 59 PERRGKGYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 344677888888887764 2224789999999998655 7777776654
No 303
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=75.29 E-value=10 Score=36.17 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=47.7
Q ss_pred CcccCCc-chhhhhHhhcce-------EEEEccc-ch--HHHHHHHhhccCCCCeeEEEecCCcccCh---HHHHHHHHH
Q 017417 35 LFPLGGQ-PMVHHPISACKR-------IYLVGFY-EE--REFALYVSSISNELRIPVRYLREDKPHGS---AGALYNFRD 100 (372)
Q Consensus 35 llpv~g~-pli~~~l~~l~~-------i~vv~~~-~~--~~i~~~~~~~~~~~~~~i~~~~~~~~~g~---~~al~~~~~ 100 (372)
++|..|. +.|...|+.+.. |+++... .+ .++.+.+.....+ .++.++..+...|. ..++.++.+
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~--~~i~~v~~~~~~G~~~K~~~l~~~~~ 123 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPD--ADIDLVIDARRHGPNRKVSNLINMLP 123 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCC--CceEEEECCCCCCCChHHHHHHHHHH
Confidence 5556554 666677766543 4444322 22 1222222221122 33444443333343 344444444
Q ss_pred HhhccCCCeEEEEcCCeeecCC-hHHHHHHHH
Q 017417 101 LIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (372)
Q Consensus 101 ~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~ 131 (372)
..+ .|.++++++|.....+ ++.++....
T Consensus 124 ~a~---ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 124 HAR---HDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred hcc---CCEEEEECCCCCcChhHHHHHHHHhc
Confidence 333 3789999999988665 777776664
No 304
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=74.82 E-value=19 Score=35.30 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=34.0
Q ss_pred ccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 017417 88 PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (372)
Q Consensus 88 ~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~ 134 (372)
..|-+.|+-.+++..+. +.++++++|...+.+ ++.+++.+.+.+
T Consensus 116 ~~Gka~AlN~gl~~s~g---~~v~~~DaD~~~~~d~L~~l~~~f~~~~ 160 (439)
T TIGR03111 116 DQGKAKALNAAIYNSIG---KYIIHIDSDGKLHKDAIKNMVTRFENNP 160 (439)
T ss_pred CCCHHHHHHHHHHHccC---CEEEEECCCCCcChHHHHHHHHHHHhCC
Confidence 46888898888887654 689999999998555 788887776443
No 305
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=73.51 E-value=26 Score=30.35 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=31.3
Q ss_pred ccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHH
Q 017417 88 PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (372)
Q Consensus 88 ~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~ 131 (372)
..|-..++..++...+. +.++++++|.....+ ++.+++.+.
T Consensus 62 ~~g~~~a~n~g~~~a~~---d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 62 HPGKRRALAEGIRHVTT---DIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred CCChHHHHHHHHHHhCC---CEEEEECCCceeChhHHHHHHHhcc
Confidence 35777888777776543 789999999998655 788887765
No 306
>PRK10018 putative glycosyl transferase; Provisional
Probab=73.36 E-value=29 Score=31.73 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=38.1
Q ss_pred eEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecC-ChHHHHHHHHh
Q 017417 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF-PLPEMLDAHRN 132 (372)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~-~l~~~l~~~~~ 132 (372)
.+.++..+...|.+.+.-.+++.... ++++++++|..+.. .+..+++...+
T Consensus 61 ri~~i~~~~n~G~~~a~N~gi~~a~g---~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 61 RITYIHNDINSGACAVRNQAIMLAQG---EYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCC---CEEEEECCCCCCCccHHHHHHHHHHh
Confidence 46666666667888888888887654 68999999998854 47888876554
No 307
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=71.38 E-value=29 Score=30.42 Aligned_cols=106 Identities=15% Similarity=0.190 Sum_probs=64.3
Q ss_pred EEEEeCCCCCCCccccCcccCCCCCcccCCcchhhhhHhhcce---EEEEcccchHHHHHHHhhccCCCCeeEEEecCCc
Q 017417 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR---IYLVGFYEEREFALYVSSISNELRIPVRYLREDK 87 (372)
Q Consensus 11 ~vIlAaG~~~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~---i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ 87 (372)
.++||-| +|..++...| =+....+|...+..+.. +.|+.+..+ ++.... ..+..+..++.+..-..
T Consensus 91 illlCTG-----~F~~l~~~~~----lleP~ril~~lV~al~~~~~vGVivP~~e-Q~~~~~-~kW~~l~~~~~~a~asP 159 (221)
T PF07302_consen 91 ILLLCTG-----EFPGLTARNP----LLEPDRILPPLVAALVGGHQVGVIVPLPE-QIAQQA-EKWQPLGNPVVVAAASP 159 (221)
T ss_pred EEEeccC-----CCCCCCCCcc----eeehHHhHHHHHHHhcCCCeEEEEecCHH-HHHHHH-HHHHhcCCCeEEEEeCC
Confidence 5566777 4544433333 34456888888888877 777776543 233222 22444555666665555
Q ss_pred ccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHH
Q 017417 88 PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDA 129 (372)
Q Consensus 88 ~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~ 129 (372)
+.|+.+.+..+...+.+..+ ++++++|=-+. ...+++++.
T Consensus 160 y~~~~~~l~~Aa~~L~~~ga-dlIvLDCmGYt-~~~r~~~~~ 199 (221)
T PF07302_consen 160 YEGDEEELAAAARELAEQGA-DLIVLDCMGYT-QEMRDIVQR 199 (221)
T ss_pred CCCCHHHHHHHHHHHHhcCC-CEEEEECCCCC-HHHHHHHHH
Confidence 56888999988888875543 58888885443 233444443
No 308
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=71.14 E-value=30 Score=31.47 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=29.4
Q ss_pred ccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHH
Q 017417 88 PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLD 128 (372)
Q Consensus 88 ~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~ 128 (372)
..|.+.+.-.+...... +.++++++|.+...+ +..+++
T Consensus 73 ~f~~a~arN~g~~~A~~---d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 73 PFSRAKARNIGAKYARG---DYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred CcCHHHHHHHHHHHcCC---CEEEEEcCCeeeCHHHHHHHHH
Confidence 46788887777777654 689999999998654 777777
No 309
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=69.96 E-value=17 Score=35.18 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=62.6
Q ss_pred CcccCCc-c-hhhhhHhhcce-------EEEEcccchHHHHHHHhhccCCCCeeEEEecC-CcccChHHHHHHHHHHhhc
Q 017417 35 LFPLGGQ-P-MVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLRE-DKPHGSAGALYNFRDLIME 104 (372)
Q Consensus 35 llpv~g~-p-li~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~-~~~~g~~~al~~~~~~l~~ 104 (372)
++|.-|. + .++.+++.+.+ |+++.....+...+.+++...+++..+..... ....|-+.++..++...+.
T Consensus 59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~~~ 138 (439)
T COG1215 59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKG 138 (439)
T ss_pred EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhcCC
Confidence 4455554 5 78888887765 66666544455555565544433212222221 3446668888888887664
Q ss_pred cCCCeEEEEcCCeeecCC-hHHHHHHHHhcCC
Q 017417 105 DNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGG 135 (372)
Q Consensus 105 ~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~ 135 (372)
|.++++++|+....| +.+++..+.+.+.
T Consensus 139 ---d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 139 ---DVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred ---CEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 689999999998665 7888877765443
No 310
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=67.45 E-value=28 Score=37.16 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=58.6
Q ss_pred CcccCCcc--hhhhhHhhcce---------EEEEcccchHHHHHHHhhccCCCCeeEEEecCC-cccChHHHHHHHHHHh
Q 017417 35 LFPLGGQP--MVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLRED-KPHGSAGALYNFRDLI 102 (372)
Q Consensus 35 llpv~g~p--li~~~l~~l~~---------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~-~~~g~~~al~~~~~~l 102 (372)
++|..|.+ ++..++..+.. |+|+-....++..+..++. + +.++... ...+-++++-.+++..
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~----~--v~yI~R~~n~~gKAGnLN~aL~~a 338 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV----G--VKYIARPTHEHAKAGNINNALKYA 338 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC----C--cEEEEeCCCCcchHHHHHHHHHhC
Confidence 45667765 56666665422 6666444444555554432 2 4444332 3345577888888876
Q ss_pred hccCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEEEe
Q 017417 103 MEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVIK 143 (372)
Q Consensus 103 ~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~~~~i~~~~ 143 (372)
+. |.++++++|++...+ ++.++..+.+.+ .+.++..+
T Consensus 339 ~G---EyIavlDAD~ip~pdfL~~~V~~f~~dP-~VglVQtp 376 (852)
T PRK11498 339 KG---EFVAIFDCDHVPTRSFLQMTMGWFLKDK-KLAMMQTP 376 (852)
T ss_pred CC---CEEEEECCCCCCChHHHHHHHHHHHhCC-CeEEEEcc
Confidence 44 699999999997655 566666554443 35555443
No 311
>PRK10063 putative glycosyl transferase; Provisional
Probab=62.63 E-value=77 Score=28.21 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=33.6
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhc
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNY 133 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~ 133 (372)
+.++.+. ..|.+.|+-.++..... ++++++++|.++..+..+++......
T Consensus 60 i~~i~~~-~~G~~~A~N~Gi~~a~g---~~v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 60 LRFVSEP-DNGIYDAMNKGIAMAQG---RFALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred EEEEECC-CCCHHHHHHHHHHHcCC---CEEEEEeCCcccCcCHHHHHHHHHhC
Confidence 4555544 35888999888887654 68999998887755544444444333
No 312
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=61.66 E-value=56 Score=31.27 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=34.3
Q ss_pred cChHHHHHHHHHHhhccC--CCeEEEEcCCeeecCC-hHHHHHHHHhcCCce
Q 017417 89 HGSAGALYNFRDLIMEDN--PSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMG 137 (372)
Q Consensus 89 ~g~~~al~~~~~~l~~~~--~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~~~ 137 (372)
.|-..++..+.+...... .+.++++++|...+.+ +.++++...+.+.++
T Consensus 114 ~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred cchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 355667887777765221 3789999999988544 788888877655443
No 313
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=59.11 E-value=13 Score=32.50 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=48.4
Q ss_pred eeEEEEeCCCC-CCCccccCcccCCCCCcccCCc-----chhhhhHhhcce--EEEEcccchHHHHHHHhhccCCCCeeE
Q 017417 9 VVAVIMVGGPT-KGTRFRPLSLNIPKPLFPLGGQ-----PMVHHPISACKR--IYLVGFYEEREFALYVSSISNELRIPV 80 (372)
Q Consensus 9 ~~~vIlAaG~~-~g~R~~~lt~~~pK~llpv~g~-----pli~~~l~~l~~--i~vv~~~~~~~i~~~~~~~~~~~~~~i 80 (372)
|++||+--... .-||+.+ .|+-..| .|+..++..+.. |+|++.... +..+. ...++.+
T Consensus 1 m~~VIPvK~~~~aKSRLs~--------~L~~~eR~~La~aMl~Dvl~al~~v~v~vVs~d~~--v~~~a---~~~~g~~- 66 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSP--------VLSPEEREALALAMLRDVLAALRAVDVVVVSRDPE--VAALA---RARLGAE- 66 (217)
T ss_dssp -EEEEE---TT-TTGGGTT--------TS-HHHHHHHHHHHHHHHHHHHHH-SEEEEES--S---TTTT---T---SSE-
T ss_pred CeEEEEcCCCCccccccCc--------cCCHHHHHHHHHHHHHHHHHHHHhcCeEEeccchh--hhhhh---hhccCCe-
Confidence 57788763300 3477766 2232333 677888887766 677765322 21111 1123433
Q ss_pred EEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHH
Q 017417 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAH 130 (372)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~ 130 (372)
++.++ ..|.-.++..+...... +.++++++|.+. ..++..++...
T Consensus 67 -vl~d~-~~gLN~Al~~a~~~~~~---~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 67 -VLPDP-GRGLNAALNAALAAAGD---DPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp -EEE----S-HHHHHHHHHH-H-----S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred -EecCC-CCCHHHHHHHHHhccCC---CceEEeecCCccCCHHHHHHHHhcc
Confidence 34433 35666777776333322 569999999997 56788888664
No 314
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=58.26 E-value=52 Score=28.07 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=29.3
Q ss_pred cChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 017417 89 HGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (372)
Q Consensus 89 ~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~ 134 (372)
.|.+.++..+...... +.+++++.|..+..+ ++.++....+.+
T Consensus 58 ~g~~~a~n~g~~~a~~---~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 58 KGRARQMNAGAAAARG---DWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred cCHHHHHHHHHHhccC---CEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 4667777777776653 689999999987544 666655554433
No 315
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=57.55 E-value=33 Score=29.32 Aligned_cols=103 Identities=19% Similarity=0.166 Sum_probs=58.0
Q ss_pred eeEEEEe---CCCCCCCccccCc-ccCCCCCcccCCcchhhhhHhhcce----EEEEcccchHHHHHHHhhccCCCCeeE
Q 017417 9 VVAVIMV---GGPTKGTRFRPLS-LNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPV 80 (372)
Q Consensus 9 ~~~vIlA---aG~~~g~R~~~lt-~~~pK~llpv~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i 80 (372)
|.+||+- ++ .-||+.|.- ..--+.++ .-||-.++..+.. |.|++...+ +..+..+ .++
T Consensus 1 mr~iIPvk~~~~--aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~~~~i~Vvtpde~--~~~~a~~------~~v 66 (210)
T COG1920 1 MRAIIPVKRLAD--AKTRLSPVLSAEERENFA----LAMLVDVLGALAGVLGEITVVTPDEE--VLVPATK------LEV 66 (210)
T ss_pred CceEEeccccCc--chhccccccCHHHHHHHH----HHHHHHHHHHhhhhcCCceEEcCChH--hhhhccc------cee
Confidence 4566763 45 678888731 00001111 1678888888776 667766432 2222111 112
Q ss_pred EEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHh
Q 017417 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRN 132 (372)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~ 132 (372)
. .+ ...-.++.++.+.+... +.++|+.+|.+. +.+++++++..+.
T Consensus 67 l--~d---~dLN~Ai~aa~~~~~~p--~~v~vvmaDLPLl~~~~i~~~~~~~~d 113 (210)
T COG1920 67 L--AD---PDLNTAINAALDEIPLP--SEVIVVMADLPLLSPEHIERALSAAKD 113 (210)
T ss_pred e--ec---cchHHHHHHHHhhCCCC--cceEEEecccccCCHHHHHHHHHhcCC
Confidence 1 11 11345666777766543 459999999997 5678888876543
No 316
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=54.11 E-value=63 Score=27.68 Aligned_cols=44 Identities=14% Similarity=-0.004 Sum_probs=30.6
Q ss_pred ccChHHHHHHHHHHhhccCCCeEEEEcCCeeecC-ChHHHHHHHHhcC
Q 017417 88 PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF-PLPEMLDAHRNYG 134 (372)
Q Consensus 88 ~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~-~l~~~l~~~~~~~ 134 (372)
..|.+.+.-.+.+.... ++++++++|..... .+..++....+.+
T Consensus 69 ~~G~~~a~N~g~~~a~g---d~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 69 PKGVGYAKNQAIAQSSG---RYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred CccHHHHHHHHHHhcCC---CEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 35677777666665443 68999999988744 4777777765544
No 317
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=53.87 E-value=59 Score=30.53 Aligned_cols=59 Identities=15% Similarity=0.026 Sum_probs=40.0
Q ss_pred EEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeec-CChHHHHHHHHh---cCCceEEEE
Q 017417 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRN---YGGMGTILV 141 (372)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~-~~l~~~l~~~~~---~~~~~~i~~ 141 (372)
+.++......|.+.|+..++..-.. +.++++++|...+ .++..+++...+ .+.++++..
T Consensus 139 i~vi~~~~N~G~~~A~~~Gi~~a~g---d~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~Gs 201 (333)
T PTZ00260 139 IRLLSLLRNKGKGGAVRIGMLASRG---KYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGS 201 (333)
T ss_pred EEEEEcCCCCChHHHHHHHHHHccC---CEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEee
Confidence 5555555567899999988876543 6899999998774 457777766543 344444443
No 318
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=53.35 E-value=71 Score=33.55 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=37.3
Q ss_pred EEEecCCc-ccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEE
Q 017417 80 VRYLREDK-PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILV 141 (372)
Q Consensus 80 i~~~~~~~-~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~~~~i~~ 141 (372)
+.++..+. ..+-++++..+++..+. +.++++++|++...+ +++++..+.+.+ .+.++.
T Consensus 204 v~yi~r~~n~~~KAgnLN~al~~a~g---d~Il~lDAD~v~~pd~L~~~v~~f~~dp-~v~~Vq 263 (713)
T TIGR03030 204 VNYITRPRNVHAKAGNINNALKHTDG---ELILIFDADHVPTRDFLQRTVGWFVEDP-KLFLVQ 263 (713)
T ss_pred cEEEECCCCCCCChHHHHHHHHhcCC---CEEEEECCCCCcChhHHHHHHHHHHhCC-CEEEEe
Confidence 44553332 23447788888876554 699999999998655 677777665433 344443
No 319
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=48.60 E-value=1.6e+02 Score=24.62 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=29.8
Q ss_pred ccChHHHHHHHHHHhhcc--------CCCeEEEEcCCeeecCC-hHHHHHHH
Q 017417 88 PHGSAGALYNFRDLIMED--------NPSHIFLLNCDVCCSFP-LPEMLDAH 130 (372)
Q Consensus 88 ~~g~~~al~~~~~~l~~~--------~~~~vlv~~gD~i~~~~-l~~~l~~~ 130 (372)
..|-+.++..++.....+ +.+.++++++|...+.+ +..+....
T Consensus 63 ~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 63 RTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred CCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 457888888888876421 12579999999988555 66655443
No 320
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=46.91 E-value=1.4e+02 Score=26.00 Aligned_cols=45 Identities=13% Similarity=-0.003 Sum_probs=30.9
Q ss_pred cccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 017417 87 KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (372)
Q Consensus 87 ~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~ 134 (372)
...|.+.+...+++.... ++++++++|..+..+ +..+.+...+.+
T Consensus 55 ~~~g~~~~~n~~~~~a~~---d~vl~lDaD~~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 55 WWDGFGAQRNFALELATN---DWVLSLDADERLTPELADEILALLATDD 100 (229)
T ss_pred CCCChHHHHHHHHHhCCC---CEEEEEeCCcCcCHHHHHHHHHHHhCCC
Confidence 346777777777776654 589999999988655 555555544433
No 321
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=45.94 E-value=30 Score=26.00 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=36.9
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCcEEeceEEC-CCCEECCCcEEEceEECCCCEECCCcEEcCC
Q 017417 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIIL-DGVEIMENAVVTNAIVGWKSSIGRWSRVQAS 365 (372)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~s~ig~~~~i~~~~~i~~~~i~-~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (372)
+........|.+++.+.++ +-...+.|. +. +...+.. +...|...+.+.+.+..+...|..++.+.+.
T Consensus 30 ~i~~~g~v~i~~~~~v~G~-i~~~~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~G~ 98 (101)
T PF04519_consen 30 NIKAEGKVKIGGNGEVKGD-IKADDVIIS-GS-VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASINGN 98 (101)
T ss_pred EEEEceEEEEcCCCEEEEE-EEEeEEEEc-CE-EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEEEE
Confidence 3333334455555555423 333344443 22 4433333 4556777777776666677777777777653
No 322
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=44.35 E-value=1.3e+02 Score=25.89 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=32.7
Q ss_pred eeEEEecCCcccC-hHHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHH
Q 017417 78 IPVRYLREDKPHG-SAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAH 130 (372)
Q Consensus 78 ~~i~~~~~~~~~g-~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~ 130 (372)
.++..+......| .+.++..+....+. ++++++++|.....+ +..+....
T Consensus 61 ~~i~~~~~~~~~G~k~~a~n~g~~~a~~---~~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 61 VNIKHVRRADRTGYKAGALAEGMKVAKG---EYVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred CceEEEECCCCCCCchHHHHHHHHhCCC---CEEEEEcCCCCCChHHHHHhhhhh
Confidence 4555554444455 46777777776543 699999999988555 66654433
No 323
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=39.88 E-value=68 Score=31.67 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=51.4
Q ss_pred cCCCCCcccCCc------chhhhhHhhcce--------EEE-EcccchHHHHHHHhhc----cCCCC--eeEEEecCCc-
Q 017417 30 NIPKPLFPLGGQ------PMVHHPISACKR--------IYL-VGFYEEREFALYVSSI----SNELR--IPVRYLREDK- 87 (372)
Q Consensus 30 ~~pK~llpv~g~------pli~~~l~~l~~--------i~v-v~~~~~~~i~~~~~~~----~~~~~--~~i~~~~~~~- 87 (372)
.+||.|||+..- |+=+|.++...- +-. |...+.+.+.+.+... ..+++ .+|.|..|..
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v~f~IsfS~Qk~s 244 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSNGKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGVKFEISFSEQKPS 244 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHHHHhcCCeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCceEEEEecccCCC
Confidence 479999999542 999999887432 433 3334444455554432 12222 2333332211
Q ss_pred ----------------------ccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCCh
Q 017417 88 ----------------------PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123 (372)
Q Consensus 88 ----------------------~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l 123 (372)
.-|--+|+...+..++. |-+.|-+-|.+.+..+
T Consensus 245 TDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNLN~lda---DiIFIKNIDNVvpd~~ 299 (513)
T PF14134_consen 245 TDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENLNDLDA---DIIFIKNIDNVVPDRL 299 (513)
T ss_pred CCeeEECCCCCccCCCCCCEEeCCCcchHHHhhhccccC---CEEEEeCccccCCccc
Confidence 11223677666665544 6788889999885443
No 324
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=38.91 E-value=2.4e+02 Score=23.83 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=19.7
Q ss_pred CcccCceeeeEEEeCHhhHHHhhhc
Q 017417 173 TFVSDLINCGVYVFTPDIFNAIQGV 197 (372)
Q Consensus 173 ~~~~~~~~~Giy~~~~~~~~~l~~~ 197 (372)
.....+...+.|+++.++++.|...
T Consensus 142 ~~yP~y~~G~~yvls~~~v~~i~~~ 166 (195)
T PF01762_consen 142 DYYPPYCSGGGYVLSSDVVKRIYKA 166 (195)
T ss_pred ccCCCcCCCCeEEecHHHHHHHHHH
Confidence 3346677889999999999988764
No 325
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=38.68 E-value=2.7e+02 Score=24.91 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=37.0
Q ss_pred eeEEEecCCcccCh-HHHHHHHHHHhhccCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEEE
Q 017417 78 IPVRYLREDKPHGS-AGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVI 142 (372)
Q Consensus 78 ~~i~~~~~~~~~g~-~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~-l~~~l~~~~~~~~~~~i~~~ 142 (372)
..+.+.......|. ++.+..++.... ...+.++++++|+....+ +..++..+...+ .+.++..
T Consensus 67 ~~v~~~~r~~~~g~Kag~l~~~~~~~~-~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~-~vg~vq~ 131 (254)
T cd04191 67 GRIYYRRRRENTGRKAGNIADFCRRWG-SRYDYMVVLDADSLMSGDTIVRLVRRMEANP-RAGIIQT 131 (254)
T ss_pred CcEEEEEcCCCCCccHHHHHHHHHHhC-CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCC-CEEEEeC
Confidence 45666554443443 445555554332 123689999999998555 788887765433 3444443
No 326
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=36.05 E-value=3.5e+02 Score=25.30 Aligned_cols=116 Identities=14% Similarity=0.125 Sum_probs=67.2
Q ss_pred CCCCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEecCCccccc
Q 017417 74 NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQ 151 (372)
Q Consensus 74 ~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 151 (372)
.+++.+|+.+. ...|.+-.+....+.+.++.+.-+.|..||+-+ -.++.+....... +..+.+++..+..--..
T Consensus 112 ~r~ga~V~~v~--~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~-k~~~lllVD~VaSlggt- 187 (385)
T KOG2862|consen 112 RRYGAEVDVVE--ADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCH-KHEALLLVDTVASLGGT- 187 (385)
T ss_pred HhhCceeeEEe--cCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhh-cCCeEEEEechhhcCCc-
Confidence 34567787773 346888888888888888877889999999986 4566665555444 55667777665321111
Q ss_pred ceEEEEcCCCCceeEeeecCCCcccCceeeeEEEeCHhhHHHhhhc
Q 017417 152 FGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGV 197 (372)
Q Consensus 152 ~~~v~~~~~~~~v~~i~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~ 197 (372)
.+.+|+ ..|.....-....-....-.++-.||+.+++++.+.
T Consensus 188 --~F~mDe--wgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~r 229 (385)
T KOG2862|consen 188 --EFEMDE--WGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDR 229 (385)
T ss_pred --cceehh--hcccEEEecchhhcCCCCCcceeecCHHHHHHHhhc
Confidence 233442 222222111111111222345566678888888763
No 327
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=35.68 E-value=36 Score=32.71 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=26.4
Q ss_pred CCcEECCCCEECCCcEEeceEECCCCEECCCcEEEceEECCCCEECC
Q 017417 312 PNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGR 358 (372)
Q Consensus 312 ~~s~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~ 358 (372)
+++..|+++++. |++|.-+-=++--.|-+|+++++++|..+..|-+
T Consensus 452 GdV~FGknV~Lk-GtViIia~~~~~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 452 GDVWFGKNVSLK-GTVIIIANEGDRIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred ccEEeccceEEe-eEEEEEecCCCeeecCCCCeeecceEeccccccc
Confidence 355555555553 2222222113334678889999888887776644
No 328
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=31.27 E-value=1.9e+02 Score=26.74 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=34.8
Q ss_pred ccChHHHHHHHHHHhhccCCCeEEEEcCCee-e-cCChHHHHHHHHh-cCCceEEEE
Q 017417 88 PHGSAGALYNFRDLIMEDNPSHIFLLNCDVC-C-SFPLPEMLDAHRN-YGGMGTILV 141 (372)
Q Consensus 88 ~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i-~-~~~l~~~l~~~~~-~~~~~~i~~ 141 (372)
..|-+.++..+....+. +.++++++|.. . +..+..+++.... .+.+++...
T Consensus 100 n~Gkg~A~~~g~~~a~g---d~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 100 RPGKGEALWRSLAATTG---DIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCCHHHHHHHHHHhcCC---CEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 46778888887765443 68999999996 5 4458888887653 344444443
No 329
>PRK10481 hypothetical protein; Provisional
Probab=30.48 E-value=3.8e+02 Score=23.63 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=47.1
Q ss_pred hhhhhHhhcce---EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeee
Q 017417 43 MVHHPISACKR---IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119 (372)
Q Consensus 43 li~~~l~~l~~---i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~ 119 (372)
+|...+..+.. +.|++.+.+ ++..+.+.. ...+.++.+.....+.++.+.+..+...+....+ +++++.|--+.
T Consensus 118 ~i~~lv~Al~~g~riGVitP~~~-qi~~~~~kw-~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~ga-D~Ivl~C~G~~ 194 (224)
T PRK10481 118 ILPPLVAAIVGGHQVGVIVPVEE-QLAQQAQKW-QVLQKPPVFALASPYHGSEEELIDAGKELLDQGA-DVIVLDCLGYH 194 (224)
T ss_pred hHHHHHHHhcCCCeEEEEEeCHH-HHHHHHHHH-HhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCC-CEEEEeCCCcC
Confidence 44555666555 777776543 344444332 2225555555444345667778877777765443 58888887665
Q ss_pred cCChHHHHHH
Q 017417 120 SFPLPEMLDA 129 (372)
Q Consensus 120 ~~~l~~~l~~ 129 (372)
. ...+.++.
T Consensus 195 ~-~~~~~le~ 203 (224)
T PRK10481 195 Q-RHRDLLQK 203 (224)
T ss_pred H-HHHHHHHH
Confidence 4 44544443
No 330
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=30.32 E-value=3.3e+02 Score=27.33 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=29.7
Q ss_pred ecCCcccChHHHHHHHHHHhh------ccCCCeEEEEcCCeeecCChHHHHHHH
Q 017417 83 LREDKPHGSAGALYNFRDLIM------EDNPSHIFLLNCDVCCSFPLPEMLDAH 130 (372)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~l~------~~~~~~vlv~~gD~i~~~~l~~~l~~~ 130 (372)
...+.+.+=+.++-.+.+.+. ..+.+.++++++|.....+.-+.+..+
T Consensus 129 ~~~~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~ 182 (504)
T PRK14716 129 VPHDGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYL 182 (504)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhh
Confidence 333344556778877776542 112368999999999866644444443
No 331
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=24.37 E-value=3.5e+02 Score=24.90 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=50.4
Q ss_pred chhhhhHhhcce-----------EEEEcccchHHHHHHHhhccCCCC-eeEEEecCCcccChHHHHHHHHHHhhccCCCe
Q 017417 42 PMVHHPISACKR-----------IYLVGFYEEREFALYVSSISNELR-IPVRYLREDKPHGSAGALYNFRDLIMEDNPSH 109 (372)
Q Consensus 42 pli~~~l~~l~~-----------i~vv~~~~~~~i~~~~~~~~~~~~-~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~ 109 (372)
.|++-+++.++. |+|+-....+.-.+..-.+..+++ -.+..+......|-++|++.+.-.... +.
T Consensus 84 ~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG---~~ 160 (323)
T KOG2977|consen 84 AMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRG---QK 160 (323)
T ss_pred HHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccC---ce
Confidence 467777777655 666644433322222222222223 234555555567888888876666554 46
Q ss_pred EEEEcCCeeecC-ChHHHHHHHH
Q 017417 110 IFLLNCDVCCSF-PLPEMLDAHR 131 (372)
Q Consensus 110 vlv~~gD~i~~~-~l~~~l~~~~ 131 (372)
.++..+|-.+.. |+..+.++..
T Consensus 161 ilfadAdGaTkf~d~ekLe~al~ 183 (323)
T KOG2977|consen 161 ILFADADGATKFADLEKLEKALN 183 (323)
T ss_pred EEEEcCCCCccCCCHHHHHHHHH
Confidence 899999988743 5666555543
No 332
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=24.08 E-value=4.6e+02 Score=23.54 Aligned_cols=80 Identities=14% Similarity=-0.046 Sum_probs=44.0
Q ss_pred EEEEcccchHHHHHHHhhccCCCCeeEEEecCCcccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhc
Q 017417 54 IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNY 133 (372)
Q Consensus 54 i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~ 133 (372)
|++++......+..++...-..++..+... ...+........++. ++++|.-.=.-...++.++++..++.
T Consensus 131 I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~------~d~~~~~~~~~~~~~---~Dv~I~iS~sg~~~~~~~~~~~ak~~ 201 (278)
T PRK11557 131 IILTGIGASGLVAQNFAWKLMKIGINAVAE------RDMHALLATVQALSP---DDLLLAISYSGERRELNLAADEALRV 201 (278)
T ss_pred EEEEecChhHHHHHHHHHHHhhCCCeEEEc------CChHHHHHHHHhCCC---CCEEEEEcCCCCCHHHHHHHHHHHHc
Confidence 888887766667777765434445544332 122334444444543 34555444333344567777777777
Q ss_pred CCceEEEEE
Q 017417 134 GGMGTILVI 142 (372)
Q Consensus 134 ~~~~~i~~~ 142 (372)
++.+..++.
T Consensus 202 ga~iI~IT~ 210 (278)
T PRK11557 202 GAKVLAITG 210 (278)
T ss_pred CCCEEEEcC
Confidence 765555554
No 333
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=23.27 E-value=82 Score=23.56 Aligned_cols=44 Identities=25% Similarity=0.228 Sum_probs=23.3
Q ss_pred CCEECCCcEEeceEECCCCEECCCcEEEceEEC-CCCEECCCcEEcC
Q 017417 319 NARIGAGVRLISCIILDGVEIMENAVVTNAIVG-WKSSIGRWSRVQA 364 (372)
Q Consensus 319 ~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~-~~~~i~~~~~i~~ 364 (372)
..+|+.++.|...+-.+.+.|. +. +.+.+.. +.+.|...+.+.+
T Consensus 36 ~v~i~~~~~v~G~i~~~~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G 80 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKADDVIIS-GS-VDGNVEASGKVEIYGTARVEG 80 (101)
T ss_pred EEEEcCCCEEEEEEEEeEEEEc-CE-EeEEEEECceEEEeCCEEEEE
Confidence 5666666666655555555553 33 4433332 4455666666554
No 334
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=23.04 E-value=2e+02 Score=23.41 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=13.6
Q ss_pred CCCEECCCcEEEceEECCCCEECCCcEEc
Q 017417 335 DGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363 (372)
Q Consensus 335 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 363 (372)
+.+.|..++.+.+-+-.+...|..++.+.
T Consensus 89 ~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~ 117 (146)
T COG1664 89 ERVELYPGGRVIGDITTKEITVEEGAIFE 117 (146)
T ss_pred eEEEEcCCcEEeeeecccEEEEccCCEEE
Confidence 34444454444444444444455554444
No 335
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=21.00 E-value=3.5e+02 Score=27.08 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=37.8
Q ss_pred HHHhhccCCC-CeeEEEecCC-cccChHHHHHHHHHHhhccCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEec
Q 017417 67 LYVSSISNEL-RIPVRYLRED-KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKV 144 (372)
Q Consensus 67 ~~~~~~~~~~-~~~i~~~~~~-~~~g~~~al~~~~~~l~~~~~~~vlv~~gD~i~~~~l~~~l~~~~~~~~~~~i~~~~~ 144 (372)
..+..+..++ ...+.++.-. .....+.++..+.+.++.+ +-+++.+-|+.++.+ +|+..+...-..-.+++|+
T Consensus 302 ~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d--~L~f~~Dvd~~f~~~---fL~rcR~nti~g~qvy~PI 376 (499)
T PF05679_consen 302 ELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPD--SLLFFCDVDMVFTSD---FLNRCRMNTIPGKQVYFPI 376 (499)
T ss_pred HHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCC--cEEEEEeCCcccCHH---HHHHHHHhhhcCcEEEEee
Confidence 3444433332 2345555433 5567778888888876553 333444445555444 4444444433345566665
Q ss_pred C
Q 017417 145 S 145 (372)
Q Consensus 145 ~ 145 (372)
.
T Consensus 377 ~ 377 (499)
T PF05679_consen 377 V 377 (499)
T ss_pred e
Confidence 3
Done!