Query 017418
Match_columns 372
No_of_seqs 279 out of 1996
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:24:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0558 Dihydrolipoamide trans 100.0 1.8E-59 3.9E-64 447.2 15.5 332 2-371 1-332 (474)
2 PRK05704 dihydrolipoamide succ 100.0 8.6E-53 1.9E-57 423.9 28.7 263 90-371 3-267 (407)
3 TIGR01347 sucB 2-oxoglutarate 100.0 2.7E-52 5.8E-57 419.6 28.5 261 90-371 1-263 (403)
4 TIGR02927 SucB_Actino 2-oxoglu 100.0 7.8E-52 1.7E-56 434.2 29.3 278 89-371 135-444 (590)
5 PLN02744 dihydrolipoyllysine-r 100.0 1.2E-51 2.5E-56 425.0 27.3 277 69-371 96-398 (539)
6 COG0508 AceF Pyruvate/2-oxoglu 100.0 9.7E-52 2.1E-56 415.9 25.9 262 89-371 2-265 (404)
7 PLN02528 2-oxoisovalerate dehy 100.0 6.8E-51 1.5E-55 411.4 29.5 274 92-371 1-274 (416)
8 TIGR01348 PDHac_trf_long pyruv 100.0 2.7E-50 5.8E-55 419.5 29.7 275 89-371 116-408 (546)
9 KOG0557 Dihydrolipoamide acety 100.0 2.2E-50 4.8E-55 399.4 24.8 268 88-370 37-328 (470)
10 TIGR01349 PDHac_trf_mito pyruv 100.0 8.9E-49 1.9E-53 398.0 28.3 265 92-371 2-294 (435)
11 PRK11854 aceF pyruvate dehydro 100.0 1.1E-47 2.4E-52 406.3 29.2 275 88-371 205-495 (633)
12 PRK11855 dihydrolipoamide acet 100.0 1.6E-47 3.5E-52 399.6 29.9 278 88-371 118-409 (547)
13 PRK11856 branched-chain alpha- 100.0 2.1E-44 4.7E-49 364.4 30.2 259 90-371 3-272 (411)
14 PLN02226 2-oxoglutarate dehydr 100.0 4.5E-42 9.8E-47 347.8 26.2 243 74-371 79-323 (463)
15 PTZ00144 dihydrolipoamide succ 100.0 5.3E-41 1.1E-45 337.6 23.8 234 88-371 43-278 (418)
16 KOG0559 Dihydrolipoamide succi 100.0 4.2E-40 9E-45 315.9 12.7 247 85-371 68-317 (457)
17 PRK11857 dihydrolipoamide acet 100.0 2.8E-33 6E-38 272.6 15.4 164 202-371 2-167 (306)
18 PRK14843 dihydrolipoamide acet 100.0 7.1E-33 1.5E-37 273.9 14.9 160 201-371 48-209 (347)
19 PF00198 2-oxoacid_dh: 2-oxoac 99.8 1.3E-19 2.9E-24 170.5 8.6 90 281-371 3-93 (231)
20 PRK14875 acetoin dehydrogenase 99.8 1.8E-18 3.9E-23 170.0 12.2 119 90-236 3-121 (371)
21 PF00364 Biotin_lipoyl: Biotin 99.8 3.6E-18 7.9E-23 133.1 9.3 74 90-163 1-74 (74)
22 PRK06748 hypothetical protein; 99.7 1.1E-15 2.3E-20 121.5 10.8 63 103-165 12-75 (83)
23 PRK12270 kgd alpha-ketoglutara 99.6 9.3E-16 2E-20 164.2 11.1 91 281-371 114-207 (1228)
24 PRK05889 putative acetyl-CoA c 99.6 1.7E-14 3.6E-19 111.5 9.2 62 103-164 10-71 (71)
25 PRK11892 pyruvate dehydrogenas 99.5 3.2E-14 7E-19 146.1 12.6 79 90-168 3-82 (464)
26 cd06663 Biotinyl_lipoyl_domain 99.5 1E-13 2.2E-18 107.0 9.8 72 92-163 2-73 (73)
27 PRK08225 acetyl-CoA carboxylas 99.5 3.2E-13 7E-18 103.8 8.7 62 103-164 9-70 (70)
28 PRK11854 aceF pyruvate dehydro 99.5 2.8E-13 6E-18 144.4 11.3 74 91-166 4-77 (633)
29 COG0511 AccB Biotin carboxyl c 99.4 2.1E-13 4.6E-18 119.0 7.7 62 103-164 78-139 (140)
30 TIGR02927 SucB_Actino 2-oxoglu 99.4 5.2E-13 1.1E-17 141.2 11.2 77 90-166 3-79 (590)
31 PF02817 E3_binding: e3 bindin 99.4 2.9E-13 6.2E-18 92.5 4.1 38 201-238 2-39 (39)
32 PRK06549 acetyl-CoA carboxylas 99.4 4.4E-12 9.6E-17 109.1 10.5 70 88-163 60-129 (130)
33 PRK11855 dihydrolipoamide acet 99.3 5.6E-12 1.2E-16 132.5 11.3 77 90-167 3-79 (547)
34 PRK07051 hypothetical protein; 99.3 1.1E-11 2.4E-16 98.0 9.9 69 90-164 4-79 (80)
35 PRK05641 putative acetyl-CoA c 99.3 8.7E-12 1.9E-16 110.3 9.5 70 89-164 84-153 (153)
36 TIGR01348 PDHac_trf_long pyruv 99.3 8.1E-12 1.8E-16 131.1 10.4 75 91-166 2-76 (546)
37 cd06850 biotinyl_domain The bi 99.3 2.1E-11 4.6E-16 91.4 8.9 61 103-163 7-67 (67)
38 PLN02983 biotin carboxyl carri 99.2 2.2E-11 4.8E-16 115.0 8.7 62 103-164 205-273 (274)
39 cd06849 lipoyl_domain Lipoyl d 99.2 1.9E-10 4E-15 85.9 10.8 73 91-163 2-74 (74)
40 TIGR00531 BCCP acetyl-CoA carb 99.2 4.4E-11 9.5E-16 106.3 8.2 62 103-164 88-156 (156)
41 PRK14042 pyruvate carboxylase 99.2 1.2E-10 2.7E-15 122.7 10.8 70 90-165 526-595 (596)
42 PRK06302 acetyl-CoA carboxylas 99.1 1.3E-10 2.7E-15 103.3 8.4 69 90-164 80-155 (155)
43 TIGR02712 urea_carbox urea car 99.0 5.5E-10 1.2E-14 126.5 9.3 62 103-164 1140-1201(1201)
44 PRK14040 oxaloacetate decarbox 99.0 1.4E-09 3E-14 115.1 10.2 70 89-164 524-593 (593)
45 TIGR01108 oadA oxaloacetate de 99.0 1E-09 2.3E-14 115.9 8.6 67 88-160 516-582 (582)
46 TIGR01235 pyruv_carbox pyruvat 99.0 1.9E-09 4.1E-14 121.3 9.7 62 103-164 1082-1143(1143)
47 PRK09282 pyruvate carboxylase 98.9 5.6E-09 1.2E-13 110.7 10.0 71 88-164 521-591 (592)
48 PRK12999 pyruvate carboxylase; 98.8 2.6E-08 5.6E-13 112.6 10.3 62 103-164 1084-1145(1146)
49 COG4770 Acetyl/propionyl-CoA c 98.8 1.3E-08 2.9E-13 104.6 7.1 62 103-164 583-644 (645)
50 COG1038 PycA Pyruvate carboxyl 98.6 7.6E-08 1.7E-12 102.1 6.2 62 103-164 1087-1148(1149)
51 KOG0369 Pyruvate carboxylase [ 98.3 8.5E-07 1.9E-11 92.7 6.0 62 103-164 1114-1175(1176)
52 cd06848 GCS_H Glycine cleavage 98.2 2.3E-06 5E-11 69.9 6.2 62 90-152 16-78 (96)
53 TIGR00998 8a0101 efflux pump m 98.0 2.2E-05 4.8E-10 77.1 8.5 34 133-166 205-238 (334)
54 PRK09783 copper/silver efflux 98.0 2.9E-05 6.2E-10 79.2 9.4 64 103-166 131-243 (409)
55 KOG0238 3-Methylcrotonyl-CoA c 98.0 5.8E-06 1.3E-10 84.5 3.8 62 103-164 609-670 (670)
56 TIGR03077 not_gcvH glycine cle 97.9 2.1E-05 4.5E-10 66.1 6.2 46 104-149 30-76 (110)
57 PRK10559 p-hydroxybenzoic acid 97.9 2.5E-05 5.4E-10 76.8 7.7 64 103-166 55-188 (310)
58 TIGR01730 RND_mfp RND family e 97.9 2.5E-05 5.4E-10 75.7 7.4 72 89-166 26-168 (322)
59 PRK00624 glycine cleavage syst 97.9 3.3E-05 7.1E-10 65.2 6.2 44 104-147 32-76 (114)
60 PRK10476 multidrug resistance 97.8 4.6E-05 9.9E-10 75.7 7.4 34 133-166 209-242 (346)
61 KOG0368 Acetyl-CoA carboxylase 97.8 3.1E-05 6.8E-10 86.8 6.7 65 102-167 692-756 (2196)
62 PRK13380 glycine cleavage syst 97.8 4.1E-05 9E-10 67.2 5.7 47 103-149 43-90 (144)
63 PRK14843 dihydrolipoamide acet 97.7 3E-05 6.6E-10 77.4 3.9 42 201-242 5-46 (347)
64 PRK01202 glycine cleavage syst 97.7 0.00012 2.5E-09 63.1 6.9 63 104-166 37-107 (127)
65 PRK15030 multidrug efflux syst 97.7 9.5E-05 2E-09 75.0 7.4 63 103-165 73-208 (397)
66 PRK15136 multidrug efflux syst 97.7 0.0001 2.2E-09 74.7 7.5 35 133-167 216-250 (390)
67 PRK09578 periplasmic multidrug 97.7 0.00011 2.3E-09 74.2 7.5 63 103-165 71-206 (385)
68 PRK03598 putative efflux pump 97.6 0.00011 2.3E-09 72.6 6.7 33 133-165 204-236 (331)
69 PRK09859 multidrug efflux syst 97.6 0.00012 2.7E-09 73.8 7.1 63 103-165 69-204 (385)
70 PF13533 Biotin_lipoyl_2: Biot 97.5 0.00018 3.9E-09 51.7 4.8 29 103-131 10-38 (50)
71 PRK11556 multidrug efflux syst 97.5 0.00026 5.7E-09 72.3 7.1 63 103-165 95-230 (415)
72 PRK11578 macrolide transporter 97.3 0.00053 1.2E-08 68.7 7.7 63 103-165 69-219 (370)
73 PF13533 Biotin_lipoyl_2: Biot 97.3 0.00031 6.8E-09 50.5 4.1 35 132-166 2-36 (50)
74 TIGR02971 heterocyst_DevB ABC 97.3 0.00074 1.6E-08 66.3 8.1 31 134-165 206-236 (327)
75 TIGR00527 gcvH glycine cleavag 97.3 0.00036 7.7E-09 60.1 5.1 46 104-149 36-82 (127)
76 PF12700 HlyD_2: HlyD family s 97.3 0.0003 6.4E-09 68.4 4.9 25 103-128 29-53 (328)
77 PF01597 GCV_H: Glycine cleava 97.0 0.0014 3.1E-08 55.9 6.0 44 104-147 31-75 (122)
78 COG0509 GcvH Glycine cleavage 96.8 0.0017 3.6E-08 56.0 4.8 44 104-147 39-83 (131)
79 TIGR03309 matur_yqeB selenium- 96.8 0.0036 7.7E-08 59.8 7.1 59 103-167 172-230 (256)
80 PRK12784 hypothetical protein; 96.7 0.0084 1.8E-07 46.8 7.3 63 103-165 13-76 (84)
81 TIGR00999 8a0102 Membrane Fusi 96.5 0.0046 1E-07 58.4 5.9 33 134-166 90-122 (265)
82 TIGR01843 type_I_hlyD type I s 96.5 0.01 2.2E-07 59.8 8.5 32 134-165 273-305 (423)
83 COG1566 EmrA Multidrug resista 96.5 0.007 1.5E-07 60.7 7.1 34 133-166 209-242 (352)
84 PRK05889 putative acetyl-CoA c 96.4 0.0059 1.3E-07 46.8 4.6 34 134-167 4-37 (71)
85 PRK06748 hypothetical protein; 96.1 0.012 2.7E-07 46.9 5.4 34 90-129 43-76 (83)
86 cd06253 M14_ASTE_ASPA_like_3 A 96.0 0.021 4.5E-07 56.0 7.7 59 103-163 236-297 (298)
87 PF13375 RnfC_N: RnfC Barrel s 96.0 0.017 3.7E-07 47.8 5.9 44 103-147 38-81 (101)
88 PRK08225 acetyl-CoA carboxylas 95.8 0.012 2.6E-07 44.8 4.0 26 102-127 45-70 (70)
89 cd06250 M14_PaAOTO_like An unc 95.8 0.026 5.6E-07 56.8 7.3 59 103-163 296-358 (359)
90 cd06251 M14_ASTE_ASPA_like_1 A 95.6 0.039 8.5E-07 53.7 7.5 58 104-163 227-286 (287)
91 PF00302 CAT: Chloramphenicol 95.5 0.052 1.1E-06 50.5 7.5 60 302-371 23-82 (206)
92 cd06252 M14_ASTE_ASPA_like_2 A 95.4 0.052 1.1E-06 53.6 7.8 60 103-164 251-314 (316)
93 TIGR02994 ectoine_eutE ectoine 95.3 0.05 1.1E-06 54.0 7.2 58 104-163 263-324 (325)
94 PRK07051 hypothetical protein; 95.1 0.054 1.2E-06 42.5 5.5 25 103-127 55-79 (80)
95 cd06850 biotinyl_domain The bi 95.1 0.032 7E-07 41.1 4.0 31 135-165 2-32 (67)
96 COG0511 AccB Biotin carboxyl c 95.0 0.031 6.8E-07 48.8 4.3 34 132-165 70-103 (140)
97 COG3608 Predicted deacylase [G 95.0 0.053 1.1E-06 53.8 6.2 60 103-164 263-325 (331)
98 PF05896 NQRA: Na(+)-transloca 94.8 0.058 1.3E-06 51.8 5.8 49 103-152 37-85 (257)
99 cd06254 M14_ASTE_ASPA_like_4 A 94.6 0.068 1.5E-06 52.0 6.0 56 103-160 230-287 (288)
100 PF13437 HlyD_3: HlyD family s 94.5 0.053 1.1E-06 44.1 4.3 31 135-165 2-32 (105)
101 PF00364 Biotin_lipoyl: Biotin 94.4 0.07 1.5E-06 41.2 4.6 33 88-126 42-74 (74)
102 PF09891 DUF2118: Uncharacteri 93.9 0.076 1.7E-06 47.0 4.3 45 103-147 88-133 (150)
103 PF00529 HlyD: HlyD family sec 93.9 0.043 9.3E-07 52.6 2.8 26 139-164 8-33 (305)
104 PRK06549 acetyl-CoA carboxylas 93.8 0.096 2.1E-06 45.3 4.7 35 132-166 61-95 (130)
105 TIGR01235 pyruv_carbox pyruvat 93.3 0.24 5.1E-06 57.0 8.0 62 104-166 1047-1108(1143)
106 PF00529 HlyD: HlyD family sec 93.1 0.082 1.8E-06 50.7 3.4 27 101-127 7-33 (305)
107 PRK10476 multidrug resistance 92.9 0.17 3.6E-06 50.3 5.4 40 125-166 43-82 (346)
108 TIGR02971 heterocyst_DevB ABC 92.8 0.16 3.5E-06 49.8 5.1 42 125-166 6-50 (327)
109 PRK05641 putative acetyl-CoA c 92.7 0.17 3.7E-06 44.9 4.6 34 133-166 85-118 (153)
110 TIGR01936 nqrA NADH:ubiquinone 92.7 0.13 2.7E-06 53.4 4.3 45 103-148 37-81 (447)
111 TIGR00998 8a0101 efflux pump m 92.6 0.13 2.9E-06 50.4 4.1 35 132-166 42-76 (334)
112 PRK05352 Na(+)-translocating N 92.2 0.26 5.6E-06 51.1 5.8 45 103-148 38-82 (448)
113 PF12700 HlyD_2: HlyD family s 92.1 0.18 3.8E-06 48.9 4.3 40 124-166 15-54 (328)
114 PRK13757 chloramphenicol acety 92.0 0.41 9E-06 45.0 6.5 55 305-370 31-85 (219)
115 PRK11556 multidrug efflux syst 91.9 0.31 6.8E-06 49.8 6.1 44 122-166 78-121 (415)
116 PRK09859 multidrug efflux syst 91.9 0.36 7.8E-06 48.7 6.3 55 111-166 41-95 (385)
117 TIGR03794 NHPM_micro_HlyD NHPM 91.5 0.28 6.1E-06 50.1 5.1 29 103-131 66-94 (421)
118 PRK11578 macrolide transporter 91.4 0.41 8.9E-06 48.0 6.2 41 124-165 54-94 (370)
119 TIGR01730 RND_mfp RND family e 91.3 0.32 7E-06 46.9 5.2 35 132-166 26-60 (322)
120 COG1726 NqrA Na+-transporting 91.3 0.26 5.7E-06 49.2 4.5 45 108-153 42-86 (447)
121 TIGR01945 rnfC electron transp 91.1 0.33 7.1E-06 50.1 5.2 43 104-147 40-82 (435)
122 TIGR01843 type_I_hlyD type I s 91.1 0.34 7.3E-06 48.8 5.2 43 125-167 36-78 (423)
123 TIGR01000 bacteriocin_acc bact 90.9 0.42 9E-06 49.5 5.8 38 129-166 56-93 (457)
124 PRK06302 acetyl-CoA carboxylas 90.8 0.39 8.5E-06 42.7 4.7 27 101-127 129-155 (155)
125 PRK09578 periplasmic multidrug 90.7 0.58 1.3E-05 47.2 6.5 56 110-166 42-97 (385)
126 TIGR00531 BCCP acetyl-CoA carb 90.5 0.4 8.7E-06 42.6 4.6 28 100-127 129-156 (156)
127 cd06255 M14_ASTE_ASPA_like_5 A 90.5 0.9 2E-05 44.4 7.4 43 104-146 239-283 (293)
128 TIGR03794 NHPM_micro_HlyD NHPM 90.3 0.44 9.5E-06 48.7 5.3 35 132-166 58-92 (421)
129 PRK10559 p-hydroxybenzoic acid 90.1 0.39 8.4E-06 47.2 4.5 34 133-166 48-81 (310)
130 PF07831 PYNP_C: Pyrimidine nu 90.0 0.28 6.2E-06 38.3 2.8 27 104-130 31-57 (75)
131 PLN02983 biotin carboxyl carri 90.0 0.5 1.1E-05 45.5 5.0 28 100-127 246-273 (274)
132 PLN02226 2-oxoglutarate dehydr 90.0 0.48 1E-05 49.3 5.2 29 101-129 140-168 (463)
133 PRK15136 multidrug efflux syst 89.9 0.41 9E-06 48.6 4.7 35 132-166 61-95 (390)
134 PF13437 HlyD_3: HlyD family s 89.9 0.77 1.7E-05 37.1 5.4 26 103-128 7-32 (105)
135 PRK05035 electron transport co 89.9 0.45 9.9E-06 52.0 5.2 43 104-147 46-88 (695)
136 PRK03598 putative efflux pump 89.8 0.42 9.1E-06 47.1 4.5 35 132-166 43-77 (331)
137 PF04952 AstE_AspA: Succinylgl 89.8 1 2.2E-05 43.4 7.1 60 104-165 228-291 (292)
138 TIGR01000 bacteriocin_acc bact 89.5 0.32 7E-06 50.3 3.6 29 102-130 66-94 (457)
139 PRK14875 acetoin dehydrogenase 89.2 0.68 1.5E-05 45.3 5.5 35 90-130 46-80 (371)
140 COG4072 Uncharacterized protei 89.1 1 2.2E-05 39.1 5.7 49 92-146 94-143 (161)
141 KOG0559 Dihydrolipoamide succi 88.7 0.89 1.9E-05 45.5 5.7 27 103-129 123-149 (457)
142 PRK15030 multidrug efflux syst 88.3 0.63 1.4E-05 47.2 4.7 42 124-166 58-99 (397)
143 PF00358 PTS_EIIA_1: phosphoen 87.3 1.4 3.1E-05 38.2 5.6 59 103-165 10-107 (132)
144 PRK14042 pyruvate carboxylase 87.2 1.9 4E-05 46.5 7.5 35 133-167 526-560 (596)
145 PRK09783 copper/silver efflux 87.2 1.1 2.4E-05 45.8 5.7 56 111-166 101-158 (409)
146 cd06663 Biotinyl_lipoyl_domain 87.1 1.4 3E-05 33.3 4.9 32 89-126 42-73 (73)
147 KOG3373 Glycine cleavage syste 87.1 0.48 1E-05 42.2 2.6 39 110-148 87-125 (172)
148 cd00210 PTS_IIA_glc PTS_IIA, P 86.8 2.2 4.7E-05 36.6 6.4 19 147-165 85-103 (124)
149 cd06849 lipoyl_domain Lipoyl d 86.0 1.7 3.6E-05 31.3 4.7 32 89-126 43-74 (74)
150 COG0508 AceF Pyruvate/2-oxoglu 85.9 1.1 2.4E-05 45.9 4.9 30 102-131 52-81 (404)
151 PRK09439 PTS system glucose-sp 85.7 1.8 4E-05 39.1 5.6 66 90-165 21-125 (169)
152 PF02749 QRPTase_N: Quinolinat 85.6 0.76 1.6E-05 36.7 2.8 23 106-128 46-68 (88)
153 COG4656 RnfC Predicted NADH:ub 85.4 0.74 1.6E-05 48.2 3.3 39 107-147 45-83 (529)
154 COG0845 AcrA Membrane-fusion p 85.2 2.3 5E-05 40.8 6.6 41 124-165 59-99 (372)
155 COG0845 AcrA Membrane-fusion p 85.2 0.82 1.8E-05 43.9 3.4 27 102-128 73-99 (372)
156 PTZ00144 dihydrolipoamide succ 85.0 1.4 3.1E-05 45.3 5.2 28 102-129 94-121 (418)
157 COG2190 NagE Phosphotransferas 83.9 1.9 4.1E-05 38.4 4.8 29 103-131 85-113 (156)
158 PRK05704 dihydrolipoamide succ 83.5 2.1 4.5E-05 44.0 5.6 30 101-130 51-80 (407)
159 PRK09282 pyruvate carboxylase 83.3 3.2 6.9E-05 44.7 7.2 35 132-166 522-556 (592)
160 TIGR01347 sucB 2-oxoglutarate 83.3 1.4 3.1E-05 45.1 4.4 29 101-129 49-77 (403)
161 TIGR00830 PTBA PTS system, glu 83.0 2.9 6.3E-05 35.7 5.4 21 145-165 83-103 (121)
162 TIGR01108 oadA oxaloacetate de 82.8 1.5 3.2E-05 47.1 4.4 35 133-167 518-552 (582)
163 PRK14040 oxaloacetate decarbox 82.6 2.5 5.4E-05 45.5 6.0 35 132-166 524-558 (593)
164 TIGR00164 PS_decarb_rel phosph 82.1 3.7 8.1E-05 37.5 6.2 53 104-161 130-182 (189)
165 COG2190 NagE Phosphotransferas 81.5 2.9 6.2E-05 37.3 5.0 20 146-165 91-110 (156)
166 PF02666 PS_Dcarbxylase: Phosp 81.1 3.4 7.3E-05 38.1 5.6 58 103-162 144-202 (202)
167 PLN02528 2-oxoisovalerate dehy 80.7 3 6.5E-05 42.9 5.6 31 100-130 46-76 (416)
168 PRK09439 PTS system glucose-sp 80.1 2.7 5.9E-05 38.0 4.5 28 103-130 100-127 (169)
169 cd00210 PTS_IIA_glc PTS_IIA, P 80.0 1.5 3.3E-05 37.6 2.7 27 103-129 78-104 (124)
170 PRK05305 phosphatidylserine de 79.7 4.8 0.0001 37.3 6.1 54 104-162 150-204 (206)
171 TIGR00830 PTBA PTS system, glu 79.5 1.6 3.4E-05 37.4 2.6 28 103-130 78-105 (121)
172 COG4770 Acetyl/propionyl-CoA c 78.6 2.3 5.1E-05 45.0 4.0 33 133-165 576-608 (645)
173 COG1038 PycA Pyruvate carboxyl 78.5 8.5 0.00018 42.7 8.2 32 134-165 1081-1112(1149)
174 COG4845 Chloramphenicol O-acet 77.6 4.3 9.2E-05 37.8 4.9 60 300-370 24-83 (219)
175 COG1566 EmrA Multidrug resista 77.4 3.2 6.9E-05 41.8 4.5 36 132-167 53-88 (352)
176 TIGR01995 PTS-II-ABC-beta PTS 77.2 2.4 5.3E-05 45.7 3.8 28 103-130 542-569 (610)
177 PRK12999 pyruvate carboxylase; 77.1 8.5 0.00018 44.7 8.3 34 133-166 1077-1110(1146)
178 PRK12784 hypothetical protein; 76.7 4.1 8.8E-05 32.1 3.9 35 134-168 7-41 (84)
179 TIGR01349 PDHac_trf_mito pyruv 75.9 3.5 7.6E-05 42.6 4.5 29 102-130 49-78 (435)
180 PF00358 PTS_EIIA_1: phosphoen 75.4 1.9 4.2E-05 37.3 2.0 28 103-130 82-109 (132)
181 TIGR02712 urea_carbox urea car 74.9 3.4 7.3E-05 48.1 4.4 35 132-166 1132-1166(1201)
182 PRK10255 PTS system N-acetyl g 72.7 10 0.00022 41.3 7.1 60 103-165 506-603 (648)
183 PRK09824 PTS system beta-gluco 71.4 4.1 8.9E-05 44.1 3.8 28 103-130 558-585 (627)
184 PRK11856 branched-chain alpha- 70.4 8.3 0.00018 39.4 5.6 29 102-130 52-80 (411)
185 PRK11892 pyruvate dehydrogenas 70.2 5.5 0.00012 41.6 4.3 31 100-130 50-81 (464)
186 cd01134 V_A-ATPase_A V/A-type 68.0 19 0.00041 36.5 7.4 128 110-239 54-205 (369)
187 PLN02744 dihydrolipoyllysine-r 67.8 5.6 0.00012 42.3 3.8 29 100-128 160-189 (539)
188 TIGR03309 matur_yqeB selenium- 67.7 7.3 0.00016 37.5 4.2 33 132-165 164-196 (256)
189 PRK09824 PTS system beta-gluco 66.0 12 0.00027 40.6 6.0 59 103-165 486-583 (627)
190 TIGR01995 PTS-II-ABC-beta PTS 65.9 14 0.0003 40.0 6.4 59 103-165 470-567 (610)
191 PRK03140 phosphatidylserine de 64.2 9.9 0.00021 36.6 4.5 57 104-163 202-258 (259)
192 PRK03934 phosphatidylserine de 62.7 20 0.00044 34.6 6.3 54 106-163 212-265 (265)
193 COG0157 NadC Nicotinate-nucleo 62.1 8.2 0.00018 37.6 3.4 25 105-129 64-88 (280)
194 TIGR01042 V-ATPase_V1_A V-type 61.5 21 0.00046 38.3 6.7 55 110-166 123-180 (591)
195 PRK08072 nicotinate-nucleotide 57.1 11 0.00024 36.6 3.5 23 106-128 65-87 (277)
196 cd06255 M14_ASTE_ASPA_like_5 A 56.9 13 0.00029 36.2 4.0 33 132-165 231-263 (293)
197 TIGR02645 ARCH_P_rylase putati 56.8 19 0.0004 38.0 5.2 42 126-167 407-472 (493)
198 KOG0369 Pyruvate carboxylase [ 56.3 8.3 0.00018 41.9 2.6 33 133-165 1107-1139(1176)
199 cd01572 QPRTase Quinolinate ph 55.9 13 0.00027 36.0 3.6 26 103-128 56-81 (268)
200 PRK10255 PTS system N-acetyl g 55.4 15 0.00033 39.9 4.5 29 103-131 578-606 (648)
201 TIGR00163 PS_decarb phosphatid 54.6 16 0.00034 34.7 4.0 48 114-162 189-236 (238)
202 PF06898 YqfD: Putative stage 54.5 17 0.00038 36.9 4.5 54 103-163 167-227 (385)
203 PRK06543 nicotinate-nucleotide 53.7 14 0.0003 36.1 3.5 24 105-128 65-88 (281)
204 cd06253 M14_ASTE_ASPA_like_3 A 53.6 16 0.00036 35.7 4.0 33 132-165 229-261 (298)
205 TIGR00164 PS_decarb_rel phosph 53.5 71 0.0015 29.1 8.0 75 85-166 68-154 (189)
206 PRK06096 molybdenum transport 53.4 14 0.00031 36.1 3.5 24 105-128 61-84 (284)
207 TIGR02643 T_phosphoryl thymidi 53.2 11 0.00025 39.0 2.9 25 103-127 378-402 (437)
208 PRK02597 rpoC2 DNA-directed RN 53.2 32 0.0007 40.4 6.7 38 108-145 404-448 (1331)
209 PF01551 Peptidase_M23: Peptid 53.1 13 0.00028 29.5 2.7 23 106-128 52-74 (96)
210 PRK05820 deoA thymidine phosph 52.7 12 0.00026 38.9 3.0 25 103-127 379-403 (440)
211 cd06251 M14_ASTE_ASPA_like_1 A 52.0 18 0.00039 35.1 4.0 33 133-166 220-252 (287)
212 PRK05742 nicotinate-nucleotide 51.7 16 0.00034 35.7 3.5 24 106-129 67-90 (277)
213 cd06910 M14_ASTE_ASPA_like_7 A 51.7 22 0.00047 34.3 4.5 45 111-162 226-271 (272)
214 cd06254 M14_ASTE_ASPA_like_4 A 51.4 19 0.0004 35.0 4.0 35 130-165 221-255 (288)
215 cd01573 modD_like ModD; Quinol 51.2 16 0.00035 35.4 3.5 24 105-128 56-79 (272)
216 PRK07428 nicotinate-nucleotide 50.9 16 0.00036 35.7 3.5 24 105-128 72-95 (288)
217 PF07831 PYNP_C: Pyrimidine nu 50.5 26 0.00056 27.2 3.9 29 138-168 30-58 (75)
218 PRK09016 quinolinate phosphori 50.5 17 0.00036 35.8 3.5 24 105-128 85-108 (296)
219 PF13375 RnfC_N: RnfC Barrel s 50.3 24 0.00051 29.1 3.9 52 113-165 11-63 (101)
220 PRK06978 nicotinate-nucleotide 50.1 17 0.00038 35.7 3.5 24 105-128 82-105 (294)
221 PRK14698 V-type ATP synthase s 49.9 39 0.00085 38.9 6.7 67 92-166 107-180 (1017)
222 PLN02716 nicotinate-nucleotide 49.2 18 0.00039 35.8 3.5 24 105-128 78-101 (308)
223 cd06250 M14_PaAOTO_like An unc 49.1 21 0.00045 36.0 4.1 32 133-165 290-321 (359)
224 PRK07896 nicotinate-nucleotide 49.0 18 0.0004 35.4 3.5 25 105-129 76-100 (289)
225 PRK06078 pyrimidine-nucleoside 48.9 15 0.00032 38.2 2.9 29 102-130 373-401 (434)
226 PRK05848 nicotinate-nucleotide 48.9 18 0.0004 35.1 3.5 23 106-128 59-81 (273)
227 PF01551 Peptidase_M23: Peptid 48.7 59 0.0013 25.6 6.0 56 103-167 21-76 (96)
228 cd01568 QPRTase_NadC Quinolina 48.7 18 0.0004 34.8 3.5 26 104-129 56-81 (269)
229 TIGR00999 8a0102 Membrane Fusi 48.5 35 0.00076 31.9 5.3 31 91-127 90-120 (265)
230 PRK06106 nicotinate-nucleotide 48.2 19 0.00042 35.2 3.5 25 104-128 69-93 (281)
231 TIGR02644 Y_phosphoryl pyrimid 48.2 16 0.00035 37.6 3.1 27 102-128 371-397 (405)
232 KOG0557 Dihydrolipoamide acety 47.9 14 0.0003 38.3 2.6 29 99-127 85-114 (470)
233 KOG0368 Acetyl-CoA carboxylase 47.3 23 0.0005 41.9 4.3 53 113-165 666-718 (2196)
234 TIGR02994 ectoine_eutE ectoine 46.5 24 0.00052 35.1 4.0 33 132-165 255-287 (325)
235 TIGR01334 modD putative molybd 46.0 22 0.00047 34.7 3.5 24 105-128 60-83 (277)
236 PRK08385 nicotinate-nucleotide 45.9 22 0.00047 34.7 3.5 24 105-128 58-81 (278)
237 TIGR02645 ARCH_P_rylase putati 45.8 19 0.00041 37.9 3.2 28 100-127 442-469 (493)
238 PF06898 YqfD: Putative stage 45.8 24 0.00051 35.9 3.9 23 103-125 197-226 (385)
239 PRK00044 psd phosphatidylserin 45.6 26 0.00057 34.2 4.1 58 105-164 224-286 (288)
240 PRK04350 thymidine phosphoryla 45.6 36 0.00077 35.9 5.2 41 126-166 399-463 (490)
241 TIGR00078 nadC nicotinate-nucl 45.4 23 0.00049 34.2 3.5 22 107-128 56-77 (265)
242 TIGR02876 spore_yqfD sporulati 45.4 38 0.00083 34.4 5.3 55 103-163 163-224 (382)
243 TIGR02643 T_phosphoryl thymidi 45.3 34 0.00074 35.5 4.9 39 129-167 336-405 (437)
244 TIGR03327 AMP_phos AMP phospho 44.7 37 0.0008 35.9 5.1 41 126-166 408-472 (500)
245 CHL00117 rpoC2 RNA polymerase 44.7 30 0.00064 40.9 4.8 41 108-148 405-453 (1364)
246 PRK04350 thymidine phosphoryla 44.4 21 0.00045 37.6 3.3 29 99-127 433-461 (490)
247 cd06252 M14_ASTE_ASPA_like_2 A 44.3 39 0.00085 33.3 5.1 35 131-166 243-277 (316)
248 KOG0238 3-Methylcrotonyl-CoA c 44.1 17 0.00037 38.4 2.5 32 134-165 603-634 (670)
249 TIGR02644 Y_phosphoryl pyrimid 43.8 40 0.00086 34.7 5.1 41 126-166 327-398 (405)
250 TIGR03327 AMP_phos AMP phospho 43.4 22 0.00047 37.6 3.2 29 99-127 442-470 (500)
251 PRK05820 deoA thymidine phosph 42.1 44 0.00095 34.8 5.2 40 128-167 336-406 (440)
252 COG3608 Predicted deacylase [G 41.6 41 0.00088 33.7 4.7 33 132-165 256-288 (331)
253 PRK06078 pyrimidine-nucleoside 41.2 43 0.00093 34.8 4.9 38 127-164 330-398 (434)
254 TIGR01043 ATP_syn_A_arch ATP s 40.5 66 0.0014 34.7 6.3 56 110-167 120-178 (578)
255 PF05896 NQRA: Na(+)-transloca 39.6 22 0.00048 34.3 2.4 30 134-163 31-60 (257)
256 PRK10871 nlpD lipoprotein NlpD 39.0 18 0.00039 36.0 1.8 18 110-127 273-290 (319)
257 COG1155 NtpA Archaeal/vacuolar 38.0 96 0.0021 33.1 6.9 57 111-168 122-180 (588)
258 TIGR02876 spore_yqfD sporulati 37.4 42 0.00091 34.2 4.2 23 103-125 194-223 (382)
259 PRK04192 V-type ATP synthase s 36.8 88 0.0019 33.8 6.6 55 110-166 123-180 (586)
260 PF09891 DUF2118: Uncharacteri 36.7 33 0.00071 30.5 2.8 42 115-167 74-115 (150)
261 PTZ00403 phosphatidylserine de 35.0 43 0.00094 33.8 3.8 59 104-165 281-340 (353)
262 COG4072 Uncharacterized protei 34.3 63 0.0014 28.3 4.1 31 137-167 96-126 (161)
263 COG4942 Membrane-bound metallo 34.1 53 0.0011 33.9 4.2 39 125-167 356-394 (420)
264 PF14492 EFG_II: Elongation Fa 34.0 71 0.0015 24.5 4.1 32 340-371 19-50 (75)
265 PF03869 Arc: Arc-like DNA bin 34.0 1.3E+02 0.0028 21.4 5.1 48 303-358 3-50 (50)
266 PRK05305 phosphatidylserine de 33.4 1.4E+02 0.003 27.6 6.6 73 87-166 89-174 (206)
267 PRK08662 nicotinate phosphorib 33.2 41 0.0009 33.7 3.3 25 103-129 69-93 (343)
268 PRK06559 nicotinate-nucleotide 32.8 45 0.00098 32.7 3.4 25 104-128 70-96 (290)
269 PF01333 Apocytochr_F_C: Apocy 32.7 34 0.00074 29.0 2.2 52 103-161 10-61 (118)
270 PRK10871 nlpD lipoprotein NlpD 31.8 1.2E+02 0.0026 30.3 6.2 24 144-167 270-293 (319)
271 COG0213 DeoA Thymidine phospho 31.5 41 0.00088 34.7 2.9 20 146-165 381-400 (435)
272 PRK14844 bifunctional DNA-dire 31.3 73 0.0016 40.2 5.3 46 108-155 2423-2468(2836)
273 PRK02259 aspartoacylase; Provi 28.2 24 0.00052 34.3 0.7 49 110-161 231-281 (288)
274 cd00516 PRTase_typeII Phosphor 28.1 61 0.0013 31.0 3.4 26 103-128 48-73 (281)
275 KOG1668 Elongation factor 1 be 27.7 34 0.00074 32.4 1.5 27 108-134 181-207 (231)
276 COG0213 DeoA Thymidine phospho 27.4 1E+02 0.0022 31.9 4.9 22 126-147 330-351 (435)
277 PRK07188 nicotinate phosphorib 27.3 67 0.0015 32.4 3.6 24 105-128 71-94 (352)
278 PRK09603 bifunctional DNA-dire 26.8 82 0.0018 39.9 4.7 19 109-127 2616-2634(2890)
279 PRK11637 AmiB activator; Provi 26.3 86 0.0019 32.1 4.3 34 134-167 341-402 (428)
280 PF02749 QRPTase_N: Quinolinat 25.6 91 0.002 24.6 3.5 22 144-165 47-68 (88)
281 PRK11536 6-N-hydroxylaminopuri 25.1 62 0.0014 30.6 2.8 72 92-165 79-165 (223)
282 PF02666 PS_Dcarbxylase: Phosp 24.5 3.7E+02 0.0081 24.4 7.8 74 85-165 77-170 (202)
283 COG0688 Psd Phosphatidylserine 24.4 1.8E+02 0.0039 27.7 5.8 76 84-166 119-206 (239)
284 cd06848 GCS_H Glycine cleavage 24.2 89 0.0019 25.0 3.2 29 139-167 27-56 (96)
285 COG1725 Predicted transcriptio 24.0 29 0.00062 29.9 0.3 19 205-223 35-53 (125)
286 cd01571 NAPRTase_B Nicotinate 22.7 89 0.0019 30.7 3.5 25 103-129 52-76 (302)
287 PLN02964 phosphatidylserine de 22.7 3.7E+02 0.0081 29.5 8.4 78 84-168 492-589 (644)
288 PRK09603 bifunctional DNA-dire 22.5 1.2E+02 0.0025 38.7 4.9 21 146-166 2616-2636(2890)
289 PF00668 Condensation: Condens 21.8 2.3E+02 0.005 25.9 6.0 25 341-365 43-67 (301)
290 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 21.6 55 0.0012 25.2 1.4 37 109-147 2-38 (86)
291 PF01333 Apocytochr_F_C: Apocy 21.0 32 0.00068 29.2 -0.0 17 108-124 45-61 (118)
292 smart00226 LMWPc Low molecular 20.9 72 0.0016 26.9 2.2 32 203-239 41-72 (140)
293 COG3453 Uncharacterized protei 20.6 1E+02 0.0022 26.5 2.9 35 205-241 47-81 (130)
294 COG0739 NlpD Membrane proteins 20.1 66 0.0014 30.1 1.9 21 108-128 215-235 (277)
No 1
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.8e-59 Score=447.22 Aligned_cols=332 Identities=47% Similarity=0.677 Sum_probs=263.3
Q ss_pred ccccchhccCCCCCceeeeeecccccccCCCCCCCCCCCCCceeeeeeecccccccccccccccCCCccccccccccccc
Q 017418 2 MISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHAL 81 (372)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 81 (372)
|+++|+||++ ++++ +. +.| +|.|+...+...++.++.++ .+.|.. ..|.||+.++.
T Consensus 1 m~A~rllrt~------s~~~---~~-~~C----------v~~~~~~~~~~h~skp~~v~---l~~~~~-~~~s~~~~~~~ 56 (474)
T KOG0558|consen 1 MMARRLLRTH------SRLS---SS-SVC----------VPEYFSLSSSLHVSKPFFVT---LMKWGG-GSRSWFSNEAM 56 (474)
T ss_pred ChhHHhhhhc------cccc---cc-chh----------HHHHHhhccCccccCcceEE---EeccCC-ccccccchhhh
Confidence 8899999999 4431 11 223 35788887888888888874 678886 78899999998
Q ss_pred cCCCCCceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEE
Q 017418 82 ADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL 161 (372)
Q Consensus 82 ~~~~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la 161 (372)
+......++.|+|-++||++.|.+|.+|+|+|||+|++.|.||||++||++++|++.++|+|++|+...+|.+.||++|.
T Consensus 57 ~t~s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lv 136 (474)
T KOG0558|consen 57 ATDSNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLV 136 (474)
T ss_pred hcccccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCccee
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHH
Q 017418 162 KLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241 (372)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~ 241 (372)
.++.++.+.......+.+.....+. ........+.++||++|+||+|+||||+.|+|||++|||+|+||++|+.
T Consensus 137 d~eve~~~ds~e~s~es~~vs~~~~------~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~ 210 (474)
T KOG0558|consen 137 DLEVEDSQDSPEDSDESPAVSLGES------KQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLG 210 (474)
T ss_pred eeeeccCcCCcccCCccccccCCCC------chhhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhc
Confidence 9998775443222111110000000 0011122457899999999999999999999999999999999999997
Q ss_pred hcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcccccEEEEeeeeechHHHHH
Q 017418 242 QKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKL 321 (372)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~~iPh~t~~~evDvt~L~~l 321 (372)
+......+..+......+ .+.|...+ ......++.+|+.|++|+|.+.|+++..||||.+.+|||||.|++|
T Consensus 211 q~pg~~~~~~~~~~a~~~-------~~~ps~~a-~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~y~dEIn~~sLvkl 282 (474)
T KOG0558|consen 211 QVPGFVTDPSPSEHAVIP-------GPSPSTKA-SSNLEADKTVPLRGFSRAMVKTMTEALKIPHFGYVDEINCDSLVKL 282 (474)
T ss_pred cCCCCccCCCCceeecCC-------CCCCcccc-cCcccccceeechhHHHHHHHHHHHHhcCCccccccccChHHHHHH
Confidence 642211111110000000 00111011 1112347889999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 322 KASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 322 R~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
|+.||...++.|+|||||+|||||+++||.+||.+|+++|.+..+|++|+
T Consensus 283 r~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~ 332 (474)
T KOG0558|consen 283 RQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKG 332 (474)
T ss_pred HHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhc
Confidence 99999887888999999999999999999999999999999999999985
No 2
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=8.6e-53 Score=423.92 Aligned_cols=263 Identities=21% Similarity=0.386 Sum_probs=199.9
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCCC
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~~ 169 (372)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+.+++.
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~ 82 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAA 82 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCCCC
Q 017418 170 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGP 249 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~~~ 249 (372)
..........++..+...+..+.. ......+.+||+||+||+|+||||+.|+|||++|||+++||++|+......+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 160 (407)
T PRK05704 83 GAAAAAAAAAAAAAAAPAQAQAAA--AAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA 160 (407)
T ss_pred cccCCCCCCCCCCCCCCCCCCCCc--cCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence 111000000000000000000000 011123679999999999999999999999999999999999997421100000
Q ss_pred CCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhhcc
Q 017418 250 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNN 328 (372)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk~~ 328 (372)
+.. .. . ...+. ......++.+||++|||+|+++|++| +++||||++.|||+++|+++|+++|+.
T Consensus 161 ~~~-----~~-~-----~~~~~----~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~ 225 (407)
T PRK05704 161 PAA-----AA-P-----AAAPA----PLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDA 225 (407)
T ss_pred CCC-----CC-C-----cCCCc----cccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhh
Confidence 000 00 0 00000 00011245689999999999999999 489999999999999999999999976
Q ss_pred CC-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 329 NS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 329 ~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
+. +.|+|+||++||+||+++||++||.||++|+++ +|++++
T Consensus 226 ~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~--~i~~~~ 267 (407)
T PRK05704 226 FEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGD--DIVYHN 267 (407)
T ss_pred hHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCC--eEEEcC
Confidence 64 458999999999999999999999999999864 687764
No 3
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=2.7e-52 Score=419.63 Aligned_cols=261 Identities=21% Similarity=0.417 Sum_probs=199.5
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCCC
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~~ 169 (372)
++|+||++|++|++|+|++|+|++||.|++||+||+|||||+.++|+|+++|+|.++++++|+.|++|++|++|+.+++.
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999865322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCCCC
Q 017418 170 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGP 249 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~~~ 249 (372)
.+........+.......+..+.. ....+.+.+||+||+||+|+||||+.|+|||++|||+++||++|+......+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 158 (403)
T TIGR01347 81 TAAPPAKSGEEKEETPAASAAAAP--TAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAP 158 (403)
T ss_pred cccccccccCCCCCCCCCCCCCCC--cCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCC
Confidence 110000000000000000000000 011234679999999999999999999999999999999999997421100000
Q ss_pred CCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhcc
Q 017418 250 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNN 328 (372)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~ 328 (372)
.. .. . .+.+. .....++.+||++|||+||++|++|+ ++||||++.|+|+++|+++|+++|+.
T Consensus 159 ~~------~~----~--~~~~~-----~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~ 221 (403)
T TIGR01347 159 AP------AA----A--AKAPA-----NFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEE 221 (403)
T ss_pred CC------Cc----c--cCCcc-----ccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhh
Confidence 00 00 0 00000 00112456899999999999999995 89999999999999999999999976
Q ss_pred CC-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 329 NS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 329 ~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
+. ++|+|+||++||+||++.||++||.||++|+++ +|++++
T Consensus 222 ~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~--~i~~~~ 263 (403)
T TIGR01347 222 FEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGD--DIVYKD 263 (403)
T ss_pred hHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCC--EEEEcC
Confidence 64 458999999999999999999999999999864 688764
No 4
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=7.8e-52 Score=434.17 Aligned_cols=278 Identities=24% Similarity=0.349 Sum_probs=203.5
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~ 168 (372)
.++|.||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|++|+.+++
T Consensus 135 ~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 214 (590)
T TIGR02927 135 ATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAGA 214 (590)
T ss_pred ceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999975432
Q ss_pred CCCC-----CCC-C------CCCC--CCCC--CCCC---C----CC----CCCCC-C-CCCCccCChHHHHHHHHhCCCC
Q 017418 169 AVPT-----PSS-D------VLES--VKPP--GSEN---S----PD----SKLNK-D-TVGGVLATPTVRNLAKLYGINL 219 (372)
Q Consensus 169 ~~~~-----~~~-~------~~~~--~~~~--~~~~---~----~~----~~~~~-~-~~~~~~asP~aR~lA~e~gIdl 219 (372)
..+. ... . .+.+ ...+ ...+ . .. ..... . ...++++||+||+||+||||||
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl 294 (590)
T TIGR02927 215 AAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDL 294 (590)
T ss_pred ccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCH
Confidence 2110 000 0 0000 0000 0000 0 00 00000 0 1124689999999999999999
Q ss_pred ccccCCCCCCceehhhHHHHHHhcCCC-CCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHH
Q 017418 220 YDVDATGKDGRVLKEDVLKYAVQKGAA-DGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTM 298 (372)
Q Consensus 220 ~~V~GTG~~GrI~~~DV~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M 298 (372)
+.|+|||++|||+++||++|+...... ..+....... ..... ......+ .+ ......++.+||++|||+||++|
T Consensus 295 ~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~--~~-~~~~~~~~~~pls~~rk~ia~~m 369 (590)
T TIGR02927 295 NSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAA-APAAA-AAASASP--AP-AKAHLRGTTQKANRIREITAKKT 369 (590)
T ss_pred HHCCCCCCCCeEeHHHHHHHHhcccccccccccccccc-Ccccc-ccccCCC--cc-ccccccCceeeccHHHHHHHHHH
Confidence 999999999999999999997532110 1111000000 00000 0000000 00 00011245689999999999999
Q ss_pred Hhcc-cccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 299 SMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 299 ~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
++|+ ++||||+++|||||+|++||+++|+.+. ++|+|||||+||+|||+.||++||.||++|++++++|+||+
T Consensus 370 ~~S~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~ 444 (590)
T TIGR02927 370 REALQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHA 444 (590)
T ss_pred HHHhccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeC
Confidence 9995 7999999999999999999999997653 45899999999999999999999999999998777899875
No 5
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=1.2e-51 Score=425.02 Aligned_cols=277 Identities=22% Similarity=0.368 Sum_probs=207.6
Q ss_pred ccccccccccccccCCCCCceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEcc
Q 017418 69 SMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148 (372)
Q Consensus 69 ~~~~r~~~~~~~~~~~~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~ 148 (372)
+.+.+++|++.+ ++| ..++|.||+||++|+||+|++|+|++||.|++||+||+|||||++++++++++|+|.+|++
T Consensus 96 ~~~~~~~~~~~~--~~~--~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~ 171 (539)
T PLN02744 96 QMQSARGFSSSS--DLP--PHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK 171 (539)
T ss_pred cccccccccccc--cCC--CCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEe
Confidence 556667777765 333 3578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-eEecccEEEEEecCCCCCC------C-C--CCCCCC---CCC-CCCC---CCCC-CC--CCC----CCCCCCccC
Q 017418 149 APGN-IVKVGETLLKLVVGDSAVP------T-P--SSDVLE---SVK-PPGS---ENSP-DS--KLN----KDTVGGVLA 204 (372)
Q Consensus 149 ~eg~-~v~vG~~la~i~~~~~~~~------~-~--~~~~~~---~~~-~~~~---~~~~-~~--~~~----~~~~~~~~a 204 (372)
++|+ .|++|++|+++..+++..+ + . .+..+. .+. +... .+.. +. ... ......+++
T Consensus 172 ~eG~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~A 251 (539)
T PLN02744 172 GDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFA 251 (539)
T ss_pred cCCCcccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccC
Confidence 9996 7999999999854322110 0 0 000000 000 0000 0000 00 000 001123679
Q ss_pred ChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcc
Q 017418 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKT 284 (372)
Q Consensus 205 sP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (372)
||+||+||+|+||||+.|+|||++|||+++||++|+...... +..+ . .. +. ......++.
T Consensus 252 SP~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~--~~~~-~---~~----------~~----~~~~~~~~~ 311 (539)
T PLN02744 252 SPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKG--ATAP-P---ST----------DS----KAPALDYTD 311 (539)
T ss_pred CchhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccc--cCCC-C---Cc----------cc----CCCCCcccc
Confidence 999999999999999999999999999999999997431110 0000 0 00 00 000012356
Q ss_pred cccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceEEeC
Q 017418 285 VPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNE 362 (372)
Q Consensus 285 ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~ 362 (372)
+||++|||+||++|++| +++||||++.|||+|+|+++|+++|+.++ ..|+||||++||+|||++||++||.||++|++
T Consensus 312 vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~ 391 (539)
T PLN02744 312 IPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTD 391 (539)
T ss_pred ccchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeecc
Confidence 89999999999999999 58999999999999999999999997654 45899999999999999999999999999986
Q ss_pred CCCEEEEcC
Q 017418 363 ESLEVILKG 371 (372)
Q Consensus 363 ~~~eIv~~~ 371 (372)
+ +|++++
T Consensus 392 ~--~i~~~~ 398 (539)
T PLN02744 392 D--YIRQYH 398 (539)
T ss_pred C--cEEEeC
Confidence 4 687764
No 6
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=9.7e-52 Score=415.93 Aligned_cols=262 Identities=27% Similarity=0.478 Sum_probs=205.9
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~ 168 (372)
.++|+||+||++|+||+|++|+|++||.|++||+|++|||||+++||+||++|+|.+|++++|++|++|++|++|+.+++
T Consensus 2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCC
Q 017418 169 AVPTPSSDVLES-VKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAAD 247 (372)
Q Consensus 169 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~ 247 (372)
..++.....+.+ ...+...+.. .. ........+||++|+||+|+||||+.+.|||++|||+++|++.+......
T Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~~-- 156 (404)
T COG0508 82 DAPAAAEAPPEPAAAAPASAPAT-AA--SAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAA-- 156 (404)
T ss_pred cccccCcccCCccccCcCcccCc-cc--cccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccccc--
Confidence 421111000000 0000000000 00 01114578999999999999999999999999999999999998754200
Q ss_pred CCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhh
Q 017418 248 GPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQ 326 (372)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk 326 (372)
++.... . ..+ ........++++||++|||.|+++|.+| .++||+|++.++|++.|++||++++
T Consensus 157 -~~~~~~---~---------~~~---~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~ 220 (404)
T COG0508 157 -AAAAPA---P---------AAA---APASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLK 220 (404)
T ss_pred -cccccc---c---------ccC---CcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhh
Confidence 000000 0 000 0001234567899999999999999999 5899999999999999999999999
Q ss_pred ccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 327 NNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 327 ~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
..++..|+||||++||+||++.||++||.+|++|+++..+|+||+
T Consensus 221 ~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~ 265 (404)
T COG0508 221 EEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHK 265 (404)
T ss_pred hhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEec
Confidence 987655999999999999999999999999999986433788875
No 7
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=6.8e-51 Score=411.37 Aligned_cols=274 Identities=64% Similarity=0.943 Sum_probs=201.8
Q ss_pred EEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCCCCC
Q 017418 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVP 171 (372)
Q Consensus 92 i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~~~~ 171 (372)
|+||+||++|+||+|++|+|++||.|++||+||++||||+.++++|+.+|+|.++++++|+.|++|++|+.|+.+++...
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999975443211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCCCCCC
Q 017418 172 TPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPST 251 (372)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~~~~~ 251 (372)
.....+++....+...+..+... ......+++||+||+||++|||||+.|+|||++|||+++||++|+........+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~ 159 (416)
T PLN02528 81 RSDSLLLPTDSSNIVSLAESDER-GSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSS 159 (416)
T ss_pred cccCCCCCCCCccCCCCCCCCcc-ccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhcccccccccc
Confidence 10000000000000000000000 11112357999999999999999999999999999999999999753211000100
Q ss_pred cccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcccccEEEEeeeeechHHHHHHHHhhccCCC
Q 017418 252 ASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSD 331 (372)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~ 331 (372)
......... . ...............++.+||++|||+||++|++|+++||||++.|||+++|+++|+++++..+.
T Consensus 160 ~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~ip~~~~~~eid~~~l~~~r~~~~~~~~~ 234 (416)
T PLN02528 160 AEEATIAEQ--E---EFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQENNTD 234 (416)
T ss_pred cccccCCcc--c---cccccCCCcccccCcceeeccchHHHHHHHHHHhcCcCCeEEEEEEEEhHHHHHHHHHHhhhhhh
Confidence 000000000 0 00000000000111246789999999999999999999999999999999999999999976556
Q ss_pred CCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 332 PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 332 ~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
+|+||||++||+||++.||++||.||++|++++.+|++++
T Consensus 235 ~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~ 274 (416)
T PLN02528 235 PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKG 274 (416)
T ss_pred cCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeC
Confidence 6899999999999999999999999999998777788864
No 8
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=2.7e-50 Score=419.51 Aligned_cols=275 Identities=23% Similarity=0.382 Sum_probs=202.7
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~ 168 (372)
.++|+||++|+ |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+.+++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47999999999 99999999999999999999999999999999999999999999999999999999999999975442
Q ss_pred CCCCC---CCCC---CCCCC-CC--CCCCC--CCCCCC---C-C-CCCCc-cCChHHHHHHHHhCCCCccccCCCCCCce
Q 017418 169 AVPTP---SSDV---LESVK-PP--GSENS--PDSKLN---K-D-TVGGV-LATPTVRNLAKLYGINLYDVDATGKDGRV 231 (372)
Q Consensus 169 ~~~~~---~~~~---~~~~~-~~--~~~~~--~~~~~~---~-~-~~~~~-~asP~aR~lA~e~gIdl~~V~GTG~~GrI 231 (372)
..... .... +.+.. .+ ...+. .+.... . . ...++ ++||+||+||+||||||+.|+|||++|||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI 274 (546)
T TIGR01348 195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI 274 (546)
T ss_pred CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence 21100 0000 00000 00 00000 000000 0 0 11134 69999999999999999999999999999
Q ss_pred ehhhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-ccccEEEEe
Q 017418 232 LKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYV 310 (372)
Q Consensus 232 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~ 310 (372)
+++||++|+..... ..+..+... ..... .....+. ........++.+||++|||.|+++|++| +++||||++
T Consensus 275 ~~~DV~~~~~~~~~-~~~~~~~~~-~~~~~---~~~~~~~--~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~ 347 (546)
T TIGR01348 275 LREDVQRFVKEPSV-RAQAAAASA-AGGAP---GALPWPN--VDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHF 347 (546)
T ss_pred eHHHHHHHhhcccc-ccCcccccc-cCCcc---ccCCCcc--ccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEE
Confidence 99999999743211 011100000 00000 0000000 0000011246689999999999999999 589999999
Q ss_pred eeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 311 EEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 311 ~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
.|+|||+|+++|+++|+.++.+|+||||++||+|||+.||++||.||++|++++++|++++
T Consensus 348 ~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~ 408 (546)
T TIGR01348 348 DKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKK 408 (546)
T ss_pred EEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeC
Confidence 9999999999999999876667899999999999999999999999999997767888874
No 9
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=2.2e-50 Score=399.43 Aligned_cols=268 Identities=23% Similarity=0.353 Sum_probs=205.6
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCC-CeEecccEEEEEecC
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG-NIVKVGETLLKLVVG 166 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg-~~v~vG~~la~i~~~ 166 (372)
.++.|.||.|+.+|++|.|++|.++|||.+.+||+||||||||++++++++++|+|.+|+++|| ..|+||.+||+|.+.
T Consensus 37 ~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~ 116 (470)
T KOG0557|consen 37 AHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVED 116 (470)
T ss_pred cceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEecc
Confidence 5688999999999999999999999999999999999999999999999999999999999999 799999999999876
Q ss_pred CCCCCCC---------CC----CCCCCCCCCC---CCCCCC-----CCCCC-CCCCCccCChHHHHHHHHhCCCCccccC
Q 017418 167 DSAVPTP---------SS----DVLESVKPPG---SENSPD-----SKLNK-DTVGGVLATPTVRNLAKLYGINLYDVDA 224 (372)
Q Consensus 167 ~~~~~~~---------~~----~~~~~~~~~~---~~~~~~-----~~~~~-~~~~~~~asP~aR~lA~e~gIdl~~V~G 224 (372)
+++.... .. .++.++.+.. ..|..+ +.+.. ...+++.+||++|+||.|+|+|++.|+|
T Consensus 117 e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i~g 196 (470)
T KOG0557|consen 117 EDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSIPG 196 (470)
T ss_pred cccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccCcC
Confidence 5432110 00 0000000000 011000 00001 1124688999999999999999999999
Q ss_pred CCCCCceehhhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-cc
Q 017418 225 TGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AK 303 (372)
Q Consensus 225 TG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~ 303 (372)
|||+|||++.||++|+...+.+.+...++. .+ +.++. +.......++.+|++.||+.|++||.+| ++
T Consensus 197 tGP~Gri~k~Di~~~v~~~~~k~~~~~~~~---~~-------~~~~~--a~~~~~~~~~diP~s~mr~viakrl~eSk~~ 264 (470)
T KOG0557|consen 197 TGPHGRILKGDIEKHVGSGKKKSAKAPKAS---AP-------PPAPA--APPVSLPGYEDIPVSNMRRVIAKRLLESKQT 264 (470)
T ss_pred cCCCceeehhhHHHhhcccccccccCCCcc---CC-------CcCcc--CCcCCCCcccccccchhhhhhhhhhhhhhcC
Confidence 999999999999999865332111111000 00 00000 0011122367899999999999999999 69
Q ss_pred ccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEc
Q 017418 304 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370 (372)
Q Consensus 304 iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~ 370 (372)
|||||++.+|+++.|+++|+++| +++.+.++|++|||+||+++||+++|.+|++|.++ +.|.+.
T Consensus 265 IPh~yvt~~~~~d~ll~~r~~ln--~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~-~~i~~~ 328 (470)
T KOG0557|consen 265 IPHYYVTVDVNLDKLLALREKLN--FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDE-LVIRQL 328 (470)
T ss_pred CCeEEEeeeeehHHHHHHHHHhh--hcccCcccchhHHHHHHHHHHHhcCCcccceecCC-cccccc
Confidence 99999999999999999999999 56778899999999999999999999999999986 556554
No 10
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=8.9e-49 Score=397.99 Aligned_cols=265 Identities=23% Similarity=0.340 Sum_probs=196.9
Q ss_pred EEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCe-EecccEEEEEecCCCCC
Q 017418 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLVVGDSAV 170 (372)
Q Consensus 92 i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~-v~vG~~la~i~~~~~~~ 170 (372)
|.||++|++|++|+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|+. |++|++|++|+.+++..
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~ 81 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDV 81 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999 99999999997543221
Q ss_pred C-C--------C-CCCCCC--C-CCC---CCC--CCCCC--CCC--CC---C-CCCCccCChHHHHHHHHhCCCCccccC
Q 017418 171 P-T--------P-SSDVLE--S-VKP---PGS--ENSPD--SKL--NK---D-TVGGVLATPTVRNLAKLYGINLYDVDA 224 (372)
Q Consensus 171 ~-~--------~-~~~~~~--~-~~~---~~~--~~~~~--~~~--~~---~-~~~~~~asP~aR~lA~e~gIdl~~V~G 224 (372)
. . . ....+. . ... +.. .+... ... .. . ....+++||+||+||+||||||+.|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~g 161 (435)
T TIGR01349 82 ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAG 161 (435)
T ss_pred ccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCCC
Confidence 1 0 0 000000 0 000 000 00000 000 00 0 111367999999999999999999999
Q ss_pred CCCCCceehhhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-cc
Q 017418 225 TGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AK 303 (372)
Q Consensus 225 TG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~ 303 (372)
||++|||+++||++|+..... ..+..... .. .. ....+ .......++.+||++|||+|+++|++| ++
T Consensus 162 tG~~GrI~~~DV~~~~~~~~~-~~~~~~~~---~~---~~-~~~~~----~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ 229 (435)
T TIGR01349 162 SGPNGRIVKKDIESFVPQSPA-SANFQAAA---TT---PA-TKKAA----APVSTGSYEDVPLSNIRKIIAKRLLESKQT 229 (435)
T ss_pred CCCCCceeHHHHHHHHhcccc-cCCCcccc---cc---cc-ccccC----CCccCCcceeecccHHHHHHHHHHHHHHhh
Confidence 999999999999999743111 01100000 00 00 00000 000111245689999999999999999 58
Q ss_pred ccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 304 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 304 iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
+||||++.||||++|+++|+++++.+.. |+||||++||+||+++||++||.||++|++ ++|++++
T Consensus 230 ip~~~~~~evd~t~l~~~r~~~~~~~~~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~--~~i~~~~ 294 (435)
T TIGR01349 230 IPHYYVSIECNVDKLLALRKELNAMASE-VYKLSVNDFIIKASALALREVPEANSSWTD--NFIRRYK 294 (435)
T ss_pred CCeEEEEEEEEhHHHHHHHHHHHhhhhc-CCcccHHHHHHHHHHHHHHhCcHhheEEeC--CeEEEeC
Confidence 9999999999999999999999976544 889999999999999999999999999986 3688764
No 11
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=1.1e-47 Score=406.30 Aligned_cols=275 Identities=26% Similarity=0.391 Sum_probs=200.7
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
..++|+||++| |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|+.|+.++
T Consensus 205 ~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG 282 (633)
T ss_pred CceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 45799999999 9999999999999999999999999999999999999999999999999999999999999997543
Q ss_pred CCCCCCC-C---CCCCCC--CCCCCCCCCCCCC-C----CCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhH
Q 017418 168 SAVPTPS-S---DVLESV--KPPGSENSPDSKL-N----KDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236 (372)
Q Consensus 168 ~~~~~~~-~---~~~~~~--~~~~~~~~~~~~~-~----~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV 236 (372)
+...... + ..+.+. ..+...+...... . .....++++||+||+||++|||||+.|+|||++|||+++||
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV 362 (633)
T PRK11854 283 AAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDV 362 (633)
T ss_pred CCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHHH
Confidence 3211000 0 000000 0000000000000 0 01112467999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC--CCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcc-cccEEEEeeee
Q 017418 237 LKYAVQKGAAD--GPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEI 313 (372)
Q Consensus 237 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~ev 313 (372)
++|+....... .+.+... ... .+ .....+. ........++.+||++|||+|+++|++|+ ++||||++.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~---~~~-~~-~~~~~~~--~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~ev 435 (633)
T PRK11854 363 QAYVKDAVKRAEAAPAAAAA---GGG-GP-GLLPWPK--VDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKA 435 (633)
T ss_pred HHHhhccccccccCCccccc---ccc-cc-ccccccc--ccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEE
Confidence 99974321100 0100000 000 00 0000000 00000112356899999999999999994 89999999999
Q ss_pred echHHHHHHHHhhccC-C-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 314 NCDALVKLKASFQNNN-S-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 314 Dvt~L~~lR~~lk~~~-~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
|+|+|+++|+++++.. . ..|+|+||++||+||+++||++||.||++|++++++|++++
T Consensus 436 D~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~ 495 (633)
T PRK11854 436 DITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKK 495 (633)
T ss_pred EcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEec
Confidence 9999999999998643 2 35899999999999999999999999999987667888874
No 12
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=1.6e-47 Score=399.57 Aligned_cols=278 Identities=29% Similarity=0.471 Sum_probs=202.6
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
.+.+|+||+||+ |++|+|++|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+.|++|++|++|...+
T Consensus 118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~ 196 (547)
T PRK11855 118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAA 196 (547)
T ss_pred CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 357999999999 9999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred CCC-CC--CCCCCCC-C-CCCCCCCCCC----CCCC-C-CCCCCCc-cCChHHHHHHHHhCCCCccccCCCCCCceehhh
Q 017418 168 SAV-PT--PSSDVLE-S-VKPPGSENSP----DSKL-N-KDTVGGV-LATPTVRNLAKLYGINLYDVDATGKDGRVLKED 235 (372)
Q Consensus 168 ~~~-~~--~~~~~~~-~-~~~~~~~~~~----~~~~-~-~~~~~~~-~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~D 235 (372)
+.. .. .....+. . .......+.. .... . ....++. ++||+||+||++|||||+.|+|||++|||+++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 276 (547)
T PRK11855 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKED 276 (547)
T ss_pred CccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHH
Confidence 211 00 0000000 0 0000000000 0000 0 0011234 799999999999999999999999999999999
Q ss_pred HHHHHHhcCCC-CCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcc-cccEEEEeeee
Q 017418 236 VLKYAVQKGAA-DGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEI 313 (372)
Q Consensus 236 V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~ev 313 (372)
|++|+...... ..+..... .... ....+.+...........++.+||++|||+||++|++|+ ++||||++.++
T Consensus 277 V~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~ev 351 (547)
T PRK11855 277 VQAFVKGAMSAAAAAAAAAA-AAGG----GGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEA 351 (547)
T ss_pred HHHHhhcccccccccccccc-cccc----ccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEE
Confidence 99997432110 01100000 0000 000000000000000112457899999999999999995 89999999999
Q ss_pred echHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 314 NCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 314 Dvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
|+++|+++|+++++.+++.|+|+||++||+||+++||++||.||++|++++++|+|++
T Consensus 352 d~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~ 409 (547)
T PRK11855 352 DITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKK 409 (547)
T ss_pred EChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeC
Confidence 9999999999999876666899999999999999999999999999987666788854
No 13
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=2.1e-44 Score=364.44 Aligned_cols=259 Identities=30% Similarity=0.529 Sum_probs=195.5
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC-
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS- 168 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~- 168 (372)
++|+||++|++|++|+|++|+|++||.|++||+||+||+||+.++++||++|+|.++++++|+.|++|++|+.|...++
T Consensus 3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~~ 82 (411)
T PRK11856 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGEA 82 (411)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred CCCCCC---CCCCCCCCCCCCCC---CCCCC---CCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHH
Q 017418 169 AVPTPS---SDVLESVKPPGSEN---SPDSK---LNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239 (372)
Q Consensus 169 ~~~~~~---~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~ 239 (372)
..+... ...+.........+ ..+.. ..........+||++|+||++|||||+.|+|||++|||+++||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~~~ 162 (411)
T PRK11856 83 EAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAA 162 (411)
T ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHHHH
Confidence 211100 00000000000000 00000 0000111246899999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHH
Q 017418 240 AVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDAL 318 (372)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L 318 (372)
+......+.+... .+ . ..+. .....++.+||++|||.|+++|.+| +++|||+++.+||+++|
T Consensus 163 ~~~~~~~~~~~~~-----~~----~---~~~~-----~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l 225 (411)
T PRK11856 163 AAAAAPAAAAAAA-----AA----A---APPA-----AAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTAL 225 (411)
T ss_pred HhcccccCCCCCC-----CC----C---CCCc-----ccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHH
Confidence 7432110000000 00 0 0000 0011356789999999999999999 59999999999999999
Q ss_pred HHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 319 VKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 319 ~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
+++|+++++. ++|+||++||+||+++||++||.||++|+++ +|++++
T Consensus 226 ~~~~k~~~~~----~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~--~i~~~~ 272 (411)
T PRK11856 226 LALRKQLKAI----GVKLTVTDFLIKAVALALKKFPELNASWDDD--AIVLKK 272 (411)
T ss_pred HHHHHHHHhh----ccCccHHHHHHHHHHHHHHhCcHhheEEeCC--EEEEcC
Confidence 9999999753 3799999999999999999999999999865 577654
No 14
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=4.5e-42 Score=347.78 Aligned_cols=243 Identities=16% Similarity=0.305 Sum_probs=171.8
Q ss_pred cccccccccCCCCCceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCe
Q 017418 74 CCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153 (372)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~ 153 (372)
+|++..+. ....+++|+||++|++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++||.
T Consensus 79 ~~~~~~~~---~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~ 155 (463)
T PLN02226 79 RWVRPFSS---ESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT 155 (463)
T ss_pred hccccccc---ccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCE
Confidence 45555432 233457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceeh
Q 017418 154 VKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLK 233 (372)
Q Consensus 154 v~vG~~la~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~ 233 (372)
|++|++|++|+.+++..+.... ....+......+..+ .. .....++.++|++|+.+ .++|+.+.
T Consensus 156 V~vG~~L~~I~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~v~asp~~r~~~----------~~~~~~~~--- 219 (463)
T PLN02226 156 VEPGTKVAIISKSEDAASQVTP-SQKIPETTDPKPSPP-AE-DKQKPKVESAPVAEKPK----------APSSPPPP--- 219 (463)
T ss_pred ecCCCEEEEeccCCccccccCc-cCCCCCCCCCCCCCc-cc-cccccCCCcchhhcccc----------CCCCCCCC---
Confidence 9999999999754321110000 000000000000000 00 00011344555554321 11221110
Q ss_pred hhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-ccccEEEEeee
Q 017418 234 EDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEE 312 (372)
Q Consensus 234 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~e 312 (372)
.... . .+. ......++.+||++|||+||++|++| +++||||++.|
T Consensus 220 ----------------~~~~-----------~---~~~----~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~e 265 (463)
T PLN02226 220 ----------------KQSA-----------K---EPQ----LPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNE 265 (463)
T ss_pred ----------------cccc-----------c---Ccc----cccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 0000 0 000 00011245689999999999999999 58999999999
Q ss_pred eechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 313 INCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 313 vDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
||+|+|+++|+++|+.++ ++|+|+||++||+||+++||++||.+|++|+++ +|++++
T Consensus 266 vDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~--~i~~~~ 323 (463)
T PLN02226 266 VDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGD--DIIYRD 323 (463)
T ss_pred EEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCC--EEEEeC
Confidence 999999999999998664 458999999999999999999999999999864 688764
No 15
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=5.3e-41 Score=337.55 Aligned_cols=234 Identities=18% Similarity=0.378 Sum_probs=171.7
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
.+.+|+||++|++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+..+
T Consensus 43 ~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 43 SIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred cceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCC
Q 017418 168 SAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAAD 247 (372)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~ 247 (372)
+...... .......+.. ..+. . .....|.+++++.++++++..+.. . . .
T Consensus 123 ~~~~~~~--~~~~~~~~~~--~~~~---~----~~~~~p~~~~~a~~~~~a~p~vr~---------------~-~--~-- 171 (418)
T PTZ00144 123 APPAAAP--AAAAAAKAEK--TTPE---K----PKAAAPTPEPPAASKPTPPAAAKP---------------P-E--P-- 171 (418)
T ss_pred ccccccc--cccCCCCCcc--CCCC---C----CCCCCCccccccccccCCchhhhc---------------c-c--c--
Confidence 3211000 0000000000 0000 0 001135566666666666555521 0 0 0
Q ss_pred CCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhh
Q 017418 248 GPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQ 326 (372)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk 326 (372)
++..... . .+. ......++.+||++|||+||++|++| ++|||||++.|||+++|+++|++++
T Consensus 172 ~~~~~~~---~----------~~~----~~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~ 234 (418)
T PTZ00144 172 APAAKPP---P----------TPV----ARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYK 234 (418)
T ss_pred CCCCCCC---C----------CCc----cccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHH
Confidence 0000000 0 000 00001234589999999999999999 4899999999999999999999999
Q ss_pred ccCC-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 327 NNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 327 ~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
+.+. ++|+|+||++||+||++.||++||.+|++|+++ +|++++
T Consensus 235 ~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~--~i~~~~ 278 (418)
T PTZ00144 235 DDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGD--EIVYRN 278 (418)
T ss_pred hhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCC--EEEEec
Confidence 7664 458999999999999999999999999999865 687764
No 16
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=4.2e-40 Score=315.95 Aligned_cols=247 Identities=17% Similarity=0.326 Sum_probs=171.3
Q ss_pred CCCceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 85 PASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 85 ~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.+.+++++..|.++|+++||.|.+|++++||.|+++|.||+|||||.+++|.||.+|+|.++++++||+|.+|+.|+.|.
T Consensus 68 ~~ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~ 147 (457)
T KOG0559|consen 68 RSTSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKIS 147 (457)
T ss_pred eccceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEec
Confidence 33478899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhc
Q 017418 165 VGDSAVPTP-SSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQK 243 (372)
Q Consensus 165 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~ 243 (372)
......... ..++..+++.+...++++.+ ........+.|.++
T Consensus 148 ~gaApa~~~~~apa~~~pk~~~a~~a~p~~--~s~~~p~~~apv~e---------------------------------- 191 (457)
T KOG0559|consen 148 PGAAPAKGGASAPAKAEPKTAPAAAAPPKP--SSKPPPKEAAPVAE---------------------------------- 191 (457)
T ss_pred CCCCCccccccCCCccCCCCCCCCCCCCCc--cCCCCccccCCCCC----------------------------------
Confidence 753322111 11111111111111111100 00000000111000
Q ss_pred CCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHH
Q 017418 244 GAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLK 322 (372)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR 322 (372)
..++|.+..+............+..++... ......+++++|++||+.||.||.+|+ +...+|.|+||||++|++||
T Consensus 192 -~p~~p~~~~P~~~~a~k~~v~~~~~~p~~~-~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mR 269 (457)
T KOG0559|consen 192 -SPPAPSSPEPVPASAKKPSVAQPKPPPSEG-ATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMR 269 (457)
T ss_pred -CCCCCCCCCCCCccccCccccCCCCCcccc-cCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 000000000000000000000000000000 011345789999999999999999996 79999999999999999999
Q ss_pred HHhhccC-CCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 323 ASFQNNN-SDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 323 ~~lk~~~-~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
++||+.| +++|+||+||.+|+|||+.||++.|.+|+.+|++ +|||++
T Consensus 270 k~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~--~iVYRD 317 (457)
T KOG0559|consen 270 KQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGD--DIVYRD 317 (457)
T ss_pred HHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCC--eeEEee
Confidence 9999987 7999999999999999999999999999999877 899986
No 17
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=2.8e-33 Score=272.57 Aligned_cols=164 Identities=24% Similarity=0.423 Sum_probs=123.9
Q ss_pred ccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCC
Q 017418 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPD 281 (372)
Q Consensus 202 ~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (372)
+++||+||+||+|+||||+.|+|||++|||+++||++|+......+.+..+.... ... .....+.+. + ......
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~--~-~~~~~~ 75 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVS-SAQ--QAAKTAAPA--A-APPKLE 75 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccc-ccc--ccccccCCc--c-cccCCC
Confidence 4689999999999999999999999999999999999974321101110000000 000 000000000 0 000112
Q ss_pred CcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceE
Q 017418 282 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359 (372)
Q Consensus 282 ~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~ 359 (372)
++.+||++||++|+++|++|+ ++||||++.|||+++|+++|+++++.+. ++|+|+||++||+||++.||++||.+|++
T Consensus 76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~ 155 (306)
T PRK11857 76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK 155 (306)
T ss_pred ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence 456899999999999999995 8999999999999999999999998654 45899999999999999999999999999
Q ss_pred EeCCCCEEEEcC
Q 017418 360 FNEESLEVILKG 371 (372)
Q Consensus 360 ~~~~~~eIv~~~ 371 (372)
|++++++|++++
T Consensus 156 ~~~~~~~i~~~~ 167 (306)
T PRK11857 156 YDEATSELVYPD 167 (306)
T ss_pred EeCCCCEEEEcC
Confidence 998777898874
No 18
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=7.1e-33 Score=273.95 Aligned_cols=160 Identities=19% Similarity=0.309 Sum_probs=123.6
Q ss_pred CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCC
Q 017418 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYP 280 (372)
Q Consensus 201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
.+.+||+||+||+|+||||+.|+|||++|||+++||++|+......+....+.. .. +. ...+.. .....
T Consensus 48 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~---~~----~~-~~~~~~---~~~~~ 116 (347)
T PRK14843 48 VVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQ---IE----KV-EEVPDN---VTPYG 116 (347)
T ss_pred cccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCccccCCCC---Cc----cc-cCCCcc---cccCC
Confidence 456999999999999999999999999999999999999743211000000000 00 00 000000 00111
Q ss_pred CCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccce
Q 017418 281 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNS 358 (372)
Q Consensus 281 ~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa 358 (372)
.++.+||++|||+||++|++| +++||||++.|||+++|+++|+++++.+. .+|+||||++||+||++.||++||.||+
T Consensus 117 ~~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na 196 (347)
T PRK14843 117 EIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINA 196 (347)
T ss_pred cceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeE
Confidence 245689999999999999999 59999999999999999999999987653 4589999999999999999999999999
Q ss_pred EEeCCCCEEEEcC
Q 017418 359 CFNEESLEVILKG 371 (372)
Q Consensus 359 ~~~~~~~eIv~~~ 371 (372)
+|++++++|++++
T Consensus 197 ~~~~~~~~i~~~~ 209 (347)
T PRK14843 197 SLTEDGKTIITHN 209 (347)
T ss_pred EEecCCCeEEEec
Confidence 9997766788874
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=99.79 E-value=1.3e-19 Score=170.46 Aligned_cols=90 Identities=27% Similarity=0.563 Sum_probs=79.8
Q ss_pred CCcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceE
Q 017418 281 DDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359 (372)
Q Consensus 281 ~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~ 359 (372)
+++++|++++||+||++|++|+ ++||||++.|||+++|+++|+++|+.....|.|+|+++||+||++.||++||.||++
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~ 82 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS 82 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence 4678999999999999999996 999999999999999999999999876555669999999999999999999999999
Q ss_pred EeCCCCEEEEcC
Q 017418 360 FNEESLEVILKG 371 (372)
Q Consensus 360 ~~~~~~eIv~~~ 371 (372)
|++++ +|++++
T Consensus 83 ~~~~~-~i~~~~ 93 (231)
T PF00198_consen 83 WDGDG-EIVLYE 93 (231)
T ss_dssp EETTS-EEEEES
T ss_pred ccccc-ceeeee
Confidence 99876 788764
No 20
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.77 E-value=1.8e-18 Score=170.03 Aligned_cols=119 Identities=24% Similarity=0.363 Sum_probs=99.2
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCCC
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~~ 169 (372)
.+|+||++|++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.++.....
T Consensus 3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~~ 82 (371)
T PRK14875 3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEVS 82 (371)
T ss_pred eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999653211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhH
Q 017418 170 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV 236 (372)
. + .....++|.+++++++ ++++..+.+++..+.+...++
T Consensus 83 ~-----------------~----------~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i 121 (371)
T PRK14875 83 D-----------------A----------EIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGGRTV 121 (371)
T ss_pred c-----------------c----------cccccccchhhhcccc-ccchhhccCCCCcceEcCcEE
Confidence 0 0 0123467788888777 788877777777666654444
No 21
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.76 E-value=3.6e-18 Score=133.12 Aligned_cols=74 Identities=27% Similarity=0.555 Sum_probs=72.0
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
.+|++|.+|..+.+|+|.+|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999986
No 22
>PRK06748 hypothetical protein; Validated
Probab=99.65 E-value=1.1e-15 Score=121.47 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=61.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe-CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS-DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet-dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.|+|.+|+|++||.|++||+|++||| ||+..+|+||.+|+|.++++++|+.|++|++|+.|+.
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 69999999999999999999999999 9999999999999999999999999999999999964
No 23
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.63 E-value=9.3e-16 Score=164.18 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=83.2
Q ss_pred CCcccccChhHHHHHHHHHhcccccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceE
Q 017418 281 DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359 (372)
Q Consensus 281 ~~~~ipls~~Rk~Ia~~M~~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~ 359 (372)
+++.+||+|++++|+++|..|+++|++|...+|+++.|+++|..+|++++ .+|.|+||++||+||+++||++||.||++
T Consensus 114 ~~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas 193 (1228)
T PRK12270 114 EDEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH 193 (1228)
T ss_pred CcceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence 45789999999999999999999999999999999999999999998875 78999999999999999999999999999
Q ss_pred EeC--CCCEEEEcC
Q 017418 360 FNE--ESLEVILKG 371 (372)
Q Consensus 360 ~~~--~~~eIv~~~ 371 (372)
|++ ++..|++++
T Consensus 194 y~~~DGKp~iv~~~ 207 (1228)
T PRK12270 194 YAEVDGKPTLVTPA 207 (1228)
T ss_pred eeccCCCceeeccC
Confidence 984 444588764
No 24
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.56 E-value=1.7e-14 Score=111.48 Aligned_cols=62 Identities=23% Similarity=0.396 Sum_probs=60.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|+|.+|++++||.|++||+|+++|+||++++|.||.+|+|.++++.+|+.|..|++|+.|+
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999884
No 25
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.55 E-value=3.2e-14 Score=146.13 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=74.9
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC-eEecccEEEEEecCCC
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGDS 168 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~-~v~vG~~la~i~~~~~ 168 (372)
++|+||++|++|++|+|.+|+|++||.|++||+|++|||||++++++|+.+|+|.++++++|+ .|++|++|++|+.+++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 479999999999999999999999999999999999999999999999999999999999995 7999999999976543
No 26
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.51 E-value=1e-13 Score=107.04 Aligned_cols=72 Identities=22% Similarity=0.430 Sum_probs=69.4
Q ss_pred EEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 92 i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
|.+|+++.++.+|++.+|++++||.|++||+|+.+|++|+.++|+||++|+|.+++++.|+.+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999875
No 27
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.45 E-value=3.2e-13 Score=103.81 Aligned_cols=62 Identities=31% Similarity=0.411 Sum_probs=60.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|+|.+|++++||.|++||+|+++|+||+.+++.++.+|+|.++++++|+.|..|++|+.|+
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999985
No 28
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.45 E-value=2.8e-13 Score=144.44 Aligned_cols=74 Identities=28% Similarity=0.453 Sum_probs=72.3
Q ss_pred EEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 91 ~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
+|.||+|| |+||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|++|++|++|+.+
T Consensus 4 ~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 4 EIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred eEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 69999999 999999999999999999999999999999999999999999999999999999999999999875
No 29
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.44 E-value=2.1e-13 Score=119.02 Aligned_cols=62 Identities=27% Similarity=0.352 Sum_probs=60.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
-|++.+.+|++||+|++||+||+||.||+.++|.||.+|+|.+|++++|+.|..|++|+.|+
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 59999999999999999999999999999999999999999999999999999999999985
No 30
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.43 E-value=5.2e-13 Score=141.19 Aligned_cols=77 Identities=26% Similarity=0.446 Sum_probs=74.3
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
++|.||++|++|.+|+|++|+|++||.|+.||+||++||||+++++.|+.+|+|.++++++|+.|++|++|+.|+..
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999753
No 31
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.39 E-value=2.9e-13 Score=92.54 Aligned_cols=38 Identities=47% Similarity=0.713 Sum_probs=33.9
Q ss_pred CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHH
Q 017418 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK 238 (372)
Q Consensus 201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~ 238 (372)
++.+||+||+||+|+|||++.|+|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 46789999999999999999999999999999999984
No 32
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.36 E-value=4.4e-12 Score=109.11 Aligned_cols=70 Identities=30% Similarity=0.482 Sum_probs=64.9
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
+...|.-|- .|+|.+|++++||.|++||+|+++|+||+..+|.||++|+|.++++++||.|..|++|+.|
T Consensus 60 ~~~~v~Ap~------~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 60 GADAMPSPM------PGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCcEEECCC------CEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 344566665 7999999999999999999999999999999999999999999999999999999999987
No 33
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.33 E-value=5.6e-12 Score=132.46 Aligned_cols=77 Identities=39% Similarity=0.646 Sum_probs=73.5
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
++|+||++|+ |.+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+.|.+|++|+.|+..+
T Consensus 3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~ 79 (547)
T PRK11855 3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG 79 (547)
T ss_pred ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence 3689999999 9999999999999999999999999999999999999999999999999999999999999997543
No 34
>PRK07051 hypothetical protein; Validated
Probab=99.32 E-value=1.1e-11 Score=98.00 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=64.7
Q ss_pred EEEEccCCCCCcceEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEE
Q 017418 90 VDVPLAQTGEGIAECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~-------w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~ 162 (372)
.+|..|. .|++.+ |++++||.|++||+|+.+|+||+.++|+||.+|+|.++++++|+.|..|++|+.
T Consensus 4 ~~~~ap~------~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~ 77 (80)
T PRK07051 4 HEIVSPL------PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR 77 (80)
T ss_pred cEEeCCC------ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence 4567776 688888 999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 017418 163 LV 164 (372)
Q Consensus 163 i~ 164 (372)
++
T Consensus 78 i~ 79 (80)
T PRK07051 78 IE 79 (80)
T ss_pred Ee
Confidence 85
No 35
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.31 E-value=8.7e-12 Score=110.29 Aligned_cols=70 Identities=26% Similarity=0.340 Sum_probs=65.0
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
...|.-|- .|+|.+|++++||.|++||+|+++|+||++.+|.||++|+|.++++++|+.|..|++|+.|.
T Consensus 84 ~~~v~ap~------~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I~ 153 (153)
T PRK05641 84 ENVVTAPM------PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIELG 153 (153)
T ss_pred CCEEECCC------CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEeC
Confidence 34566665 69999999999999999999999999999999999999999999999999999999999873
No 36
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.30 E-value=8.1e-12 Score=131.12 Aligned_cols=75 Identities=31% Similarity=0.527 Sum_probs=72.1
Q ss_pred EEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 91 ~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
+|+||+||+. .+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+.|.+|++|++|+..
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~ 76 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG 76 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence 5899999987 89999999999999999999999999999999999999999999999999999999999999753
No 37
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.28 E-value=2.1e-11 Score=91.40 Aligned_cols=61 Identities=33% Similarity=0.497 Sum_probs=59.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
+|+|.+|++++||.|++||+|++++++|...+|+||.+|+|.++++..|+.|..|++|+.|
T Consensus 7 ~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 7999999999999999999999999999999999999999999999999999999999875
No 38
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.24 E-value=2.2e-11 Score=115.03 Aligned_cols=62 Identities=26% Similarity=0.421 Sum_probs=58.5
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~-------w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|++.+ |+|++||.|++||+|++||+||+.++|+|+.+|+|.+|++++|+.|.+|++|++|+
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 456665 99999999999999999999999999999999999999999999999999999985
No 39
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.21 E-value=1.9e-10 Score=85.91 Aligned_cols=73 Identities=34% Similarity=0.651 Sum_probs=70.1
Q ss_pred EEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 91 ~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
++.+|+++.+..+|+|.+|+++.|+.|..|++|+.++++|....+.++.+|++.+.++.+|+.+..|++|+++
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999875
No 40
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.20 E-value=4.4e-11 Score=106.30 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=59.1
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~-------w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
-|++.. |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+.|..|++|+.|+
T Consensus 88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 588875 99999999999999999999999999999999999999999999999999999874
No 41
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.16 E-value=1.2e-10 Score=122.73 Aligned_cols=70 Identities=27% Similarity=0.414 Sum_probs=65.0
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.+|.-|- .|+|++|+|++||.|++||+|++||+||++.+|+||++|+|.++++++|+.|.+|++|+.|+.
T Consensus 526 ~~v~apm------~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 526 GDITVAI------PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred CeEecCc------ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 3555554 699999999999999999999999999999999999999999999999999999999999964
No 42
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.15 E-value=1.3e-10 Score=103.27 Aligned_cols=69 Identities=28% Similarity=0.384 Sum_probs=62.6
Q ss_pred EEEEccCCCCCcceEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEE
Q 017418 90 VDVPLAQTGEGIAECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~-------w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~ 162 (372)
..|.-|- -|++.. |+|++||.|++||+||.||+||+..+|+|+++|+|.+++++.|+.|..|++|+.
T Consensus 80 ~~v~sp~------~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~ 153 (155)
T PRK06302 80 HVVTSPM------VGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFV 153 (155)
T ss_pred CEEeCCc------CEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEE
Confidence 3466565 477765 999999999999999999999999999999999999999999999999999998
Q ss_pred Ee
Q 017418 163 LV 164 (372)
Q Consensus 163 i~ 164 (372)
|+
T Consensus 154 i~ 155 (155)
T PRK06302 154 IE 155 (155)
T ss_pred eC
Confidence 74
No 43
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.03 E-value=5.5e-10 Score=126.54 Aligned_cols=62 Identities=29% Similarity=0.510 Sum_probs=60.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 79999999999999999999999999999999999999999999999999999999999884
No 44
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.00 E-value=1.4e-09 Score=115.08 Aligned_cols=70 Identities=29% Similarity=0.339 Sum_probs=64.9
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
..+|.-|- .|+|++|+|++||.|++||+|++||+||++.+|.||.+|+|.++++++|+.|..|++|++|.
T Consensus 524 ~~~V~Ap~------~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 524 GEPVTAPL------AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred CceEECCc------cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 44566665 79999999999999999999999999999999999999999999999999999999999873
No 45
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.98 E-value=1e-09 Score=115.85 Aligned_cols=67 Identities=27% Similarity=0.318 Sum_probs=61.5
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEE
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETL 160 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~l 160 (372)
+...|.-|- .|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|.+|++|
T Consensus 516 ~~~~v~ap~------~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 516 AGTPVTAPI------AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCeEeCCc------cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 344566665 7999999999999999999999999999999999999999999999999999999875
No 46
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.95 E-value=1.9e-09 Score=121.31 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=60.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 69999999999999999999999999999999999999999999999999999999999884
No 47
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.89 E-value=5.6e-09 Score=110.65 Aligned_cols=71 Identities=24% Similarity=0.317 Sum_probs=65.9
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
+...|.-|- .|+|++|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 521 ~~~~V~Ap~------~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 521 APGAVTSPM------PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CCceEeCCC------cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 445566665 79999999999999999999999999999999999999999999999999999999999985
No 48
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.76 E-value=2.6e-08 Score=112.61 Aligned_cols=62 Identities=31% Similarity=0.498 Sum_probs=60.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|+|++|+|++||.|++||+|+++|+||++.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 69999999999999999999999999999999999999999999999999999999999985
No 49
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.76 E-value=1.3e-08 Score=104.55 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=60.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|+|+.+.|++|+.|.+||+|+.+|.|||+..|+||.+|+|.++.+.+|+.|..|++|+.++
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 59999999999999999999999999999999999999999999999999999999999986
No 50
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.57 E-value=7.6e-08 Score=102.11 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=60.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|.|+++.|+.||.|++||+|+.+|.|||+..|.||+||+|..++|..|+.|..|+.|.+++
T Consensus 1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 59999999999999999999999999999999999999999999999999999999999875
No 51
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.30 E-value=8.5e-07 Score=92.73 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=60.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|+|+++.|++|+.|++||+||.+..|||++-|.||.+|+|+++.+..|+.+..|+.|++++
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 59999999999999999999999999999999999999999999999999999999999886
No 52
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.24 E-value=2.3e-06 Score=69.87 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=48.2
Q ss_pred EEEEccCCCCCcceEEEEE-EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC
Q 017418 90 VDVPLAQTGEGIAECELLK-WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN 152 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~-w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~ 152 (372)
..|-|=+.+..+ =|.|.. |++++|+.|++||.|++||++|+..+|.||.+|+|.++.....+
T Consensus 16 ~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~ 78 (96)
T cd06848 16 ATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD 78 (96)
T ss_pred EEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence 334444433322 467777 56777999999999999999999999999999999999866554
No 53
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.99 E-value=2.2e-05 Score=77.12 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=31.5
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..|+||++|+|..+.+.+|+.|..|++|+.|...
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 238 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPA 238 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcC
Confidence 4699999999999999999999999999999754
No 54
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.97 E-value=2.9e-05 Score=79.20 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=57.0
Q ss_pred eEEEEEEE-cCCCCeecCCCeEEEEEeC------------------------------------------------ceee
Q 017418 103 ECELLKWF-VKEGDEIEEFQPLCAVQSD------------------------------------------------KATI 133 (372)
Q Consensus 103 eG~I~~w~-v~eGd~V~~Gd~l~~vetd------------------------------------------------K~~~ 133 (372)
.|.|.+++ +++||.|++||+|++|++. ....
T Consensus 131 ~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~ 210 (409)
T PRK09783 131 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRF 210 (409)
T ss_pred CEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcE
Confidence 79999998 9999999999999999831 0135
Q ss_pred EEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.|+||++|+|.+..+.+|+.|..|++|+.|...
T Consensus 211 ~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~ 243 (409)
T PRK09783 211 TLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 243 (409)
T ss_pred EEECCCCeEEEEEECCCCCEECCCCeEEEEEcC
Confidence 799999999999999999999999999999654
No 55
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.96 E-value=5.8e-06 Score=84.47 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=59.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
-|.|.+++|++||.|++||.|+.++.|||...++||.+|+|..+.++.|++|..|.+|..++
T Consensus 609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 47899999999999999999999999999999999999999999999999999999998763
No 56
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.94 E-value=2.1e-05 Score=66.05 Aligned_cols=46 Identities=26% Similarity=0.271 Sum_probs=38.7
Q ss_pred EEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccC
Q 017418 104 CELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (372)
Q Consensus 104 G~I~~w~-v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~ 149 (372)
|.|+.+. .++|+.|++||+|++||++|+..+|.||.+|+|.+++-.
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~ 76 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIA 76 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence 4444442 366999999999999999999999999999999998644
No 57
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.93 E-value=2.5e-05 Score=76.76 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=56.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------- 131 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~--------------------------------------------------- 131 (372)
.|.|.+++|++||.|++||+|+++++...
T Consensus 55 ~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~a 134 (310)
T PRK10559 55 SGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQTV 134 (310)
T ss_pred ceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 79999999999999999999999986210
Q ss_pred -------------------eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 -------------------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 -------------------~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...|+||++|+|..+.+++|+.|..|++|+.|...
T Consensus 135 ~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 135 LHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence 24599999999999999999999999999988643
No 58
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.92 E-value=2.5e-05 Score=75.68 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=61.0
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCce-------------------------------------
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKA------------------------------------- 131 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~------------------------------------- 131 (372)
...|..|. +|+|.++++++||.|++||+|+.+++...
T Consensus 26 ~~~v~a~~------~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~ 99 (322)
T TIGR01730 26 EADLAAEV------AGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAV 99 (322)
T ss_pred EEEEEccc------cEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 34555554 79999999999999999999999975311
Q ss_pred ----------------------------------eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 ----------------------------------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ----------------------------------~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...|+||++|+|..+.+.+|+.+..|++|+.|...
T Consensus 100 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 100 SQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence 24699999999999999999999999999999753
No 59
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.86 E-value=3.3e-05 Score=65.24 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=37.9
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418 104 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (372)
Q Consensus 104 G~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~ 147 (372)
|.|+.+.. ++|+.|++||+|++||++|+..+|.||.+|+|.++.
T Consensus 32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 44544433 669999999999999999999999999999999885
No 60
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.81 E-value=4.6e-05 Score=75.71 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=31.2
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..|+||++|+|..+.+.+|+.|..|++|+.|...
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~ 242 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDT 242 (346)
T ss_pred CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecC
Confidence 3589999999999999999999999999999754
No 61
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.81 E-value=3.1e-05 Score=86.81 Aligned_cols=65 Identities=26% Similarity=0.569 Sum_probs=60.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
..|++++|+|+.|+.|..||+-++||.|||.+.+.+..+|+| +...++|+.+..|++|+.++-++
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd 756 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD 756 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence 379999999999999999999999999999999999999998 56689999999999999998654
No 62
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.78 E-value=4.1e-05 Score=67.24 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=42.5
Q ss_pred eEEEEEEEcC-CCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccC
Q 017418 103 ECELLKWFVK-EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (372)
Q Consensus 103 eG~I~~w~v~-eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~ 149 (372)
=|.|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.++...
T Consensus 43 lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~ 90 (144)
T PRK13380 43 AGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEA 90 (144)
T ss_pred cCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHh
Confidence 4778888776 8999999999999999999999999999999998744
No 63
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.69 E-value=3e-05 Score=77.42 Aligned_cols=42 Identities=52% Similarity=0.752 Sum_probs=38.4
Q ss_pred CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHh
Q 017418 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (372)
Q Consensus 201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~ 242 (372)
+..+||.+|++|+++|||++.|+|||++|||+++||++|...
T Consensus 5 ~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~ 46 (347)
T PRK14843 5 KLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT 46 (347)
T ss_pred cccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence 345799999999999999999999999999999999999753
No 64
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.68 E-value=0.00012 Score=63.07 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=47.3
Q ss_pred EEEEEE-EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEcc---CCCCeEe---ccc-EEEEEecC
Q 017418 104 CELLKW-FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH---APGNIVK---VGE-TLLKLVVG 166 (372)
Q Consensus 104 G~I~~w-~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~---~eg~~v~---vG~-~la~i~~~ 166 (372)
|.|+.+ +.+.|+.|++||+++.||++|...+|.||.+|+|.++.. ...+.+. -|+ -|+.|...
T Consensus 37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~ 107 (127)
T PRK01202 37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPS 107 (127)
T ss_pred CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeC
Confidence 445444 346799999999999999999999999999999999953 3333433 343 67777643
No 65
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.68 E-value=9.5e-05 Score=74.99 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=54.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------- 131 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~--------------------------------------------------- 131 (372)
.|+|.++++++||.|++||+|++|+....
T Consensus 73 sG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~ 152 (397)
T PRK15030 73 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ 152 (397)
T ss_pred cEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 79999999999999999999999985210
Q ss_pred --------------------eeEEecCCCeEEEEEccCCCCeEecccE--EEEEec
Q 017418 132 --------------------TIEITSRYKGKVAQLLHAPGNIVKVGET--LLKLVV 165 (372)
Q Consensus 132 --------------------~~ei~ap~~G~v~~i~~~eg~~v~vG~~--la~i~~ 165 (372)
...|+||++|+|.+.+++.|+.|..|++ |+.|..
T Consensus 153 a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~ 208 (397)
T PRK15030 153 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ 208 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEe
Confidence 2359999999999999999999999985 666643
No 66
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.67 E-value=0.0001 Score=74.65 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=31.7
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
..|+||++|+|..+.+++|+.|..|++|+.|...+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence 46999999999999999999999999999986543
No 67
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.66 E-value=0.00011 Score=74.21 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=54.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------- 131 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~--------------------------------------------------- 131 (372)
.|+|.++++++||.|++||+|+.+++...
T Consensus 71 ~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~ 150 (385)
T PRK09578 71 AGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQ 150 (385)
T ss_pred cEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999976311
Q ss_pred --------------------eeEEecCCCeEEEEEccCCCCeEecc--cEEEEEec
Q 017418 132 --------------------TIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVV 165 (372)
Q Consensus 132 --------------------~~ei~ap~~G~v~~i~~~eg~~v~vG--~~la~i~~ 165 (372)
...|+||++|+|.+.++++|+.|..| ++|+.|..
T Consensus 151 a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~ 206 (385)
T PRK09578 151 AKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQ 206 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEe
Confidence 23699999999999999999999985 58888864
No 68
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.62 E-value=0.00011 Score=72.60 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=30.8
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
..|+||++|+|..+.+.+|+.|..|++|+.|..
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~ 236 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSL 236 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEec
Confidence 479999999999999999999999999999964
No 69
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.61 E-value=0.00012 Score=73.78 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=54.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc----------------------------------------------------
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK---------------------------------------------------- 130 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK---------------------------------------------------- 130 (372)
.|.|.++++++||.|++||+|++|+...
T Consensus 69 ~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~ 148 (385)
T PRK09859 69 GGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNE 148 (385)
T ss_pred cEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence 7999999999999999999999998531
Q ss_pred -------------------eeeEEecCCCeEEEEEccCCCCeEeccc--EEEEEec
Q 017418 131 -------------------ATIEITSRYKGKVAQLLHAPGNIVKVGE--TLLKLVV 165 (372)
Q Consensus 131 -------------------~~~ei~ap~~G~v~~i~~~eg~~v~vG~--~la~i~~ 165 (372)
....|+||++|+|.+.++..|+.|..|+ +|+.|..
T Consensus 149 a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~ 204 (385)
T PRK09859 149 AEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQR 204 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEe
Confidence 0246999999999999999999999985 5777754
No 70
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.51 E-value=0.00018 Score=51.73 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=26.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~ 131 (372)
.|+|.+|+|++||.|++||+|+++++...
T Consensus 10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 10 SGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred CEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 79999999999999999999999987543
No 71
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.46 E-value=0.00026 Score=72.30 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=53.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------- 131 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~--------------------------------------------------- 131 (372)
.|+|.++++++||.|++||+|++|+....
T Consensus 95 sG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~ 174 (415)
T PRK11556 95 DGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE 174 (415)
T ss_pred cEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence 79999999999999999999999975210
Q ss_pred --------------------eeEEecCCCeEEEEEccCCCCeEeccc--EEEEEec
Q 017418 132 --------------------TIEITSRYKGKVAQLLHAPGNIVKVGE--TLLKLVV 165 (372)
Q Consensus 132 --------------------~~ei~ap~~G~v~~i~~~eg~~v~vG~--~la~i~~ 165 (372)
...|+||++|+|..+.+..|+.|..|+ +|+.|..
T Consensus 175 a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 175 TEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence 236999999999999999999999984 6776643
No 72
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.35 E-value=0.00053 Score=68.70 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=53.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc----------------------------------------------------
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK---------------------------------------------------- 130 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK---------------------------------------------------- 130 (372)
.|.|.+|++++||.|++||+|+.++...
T Consensus 69 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~ 148 (370)
T PRK11578 69 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDT 148 (370)
T ss_pred ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 6999999999999999999999998631
Q ss_pred ---------------------------------eeeEEecCCCeEEEEEccCCCCeEecc---cEEEEEec
Q 017418 131 ---------------------------------ATIEITSRYKGKVAQLLHAPGNIVKVG---ETLLKLVV 165 (372)
Q Consensus 131 ---------------------------------~~~ei~ap~~G~v~~i~~~eg~~v~vG---~~la~i~~ 165 (372)
....|+||++|+|..+.+..|+.|..| ++|+.|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~ 219 (370)
T PRK11578 149 AATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD 219 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEec
Confidence 013699999999999999999999765 46887754
No 73
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.32 E-value=0.00031 Score=50.48 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=32.3
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
+..|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP 36 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence 46799999999999999999999999999999754
No 74
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.31 E-value=0.00074 Score=66.33 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=27.3
Q ss_pred EEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.|+||++|+|..+.+..|+.|.. ++|+.|..
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~ 236 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGD 236 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEec
Confidence 57899999999999999999986 78888764
No 75
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.31 E-value=0.00036 Score=60.07 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=38.8
Q ss_pred EEEEEE-EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccC
Q 017418 104 CELLKW-FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (372)
Q Consensus 104 G~I~~w-~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~ 149 (372)
|.|..+ +.++|+.|++||+++.||++|+..+|.||.+|+|.++.-.
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~ 82 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA 82 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence 444444 3467999999999999999999999999999999988633
No 76
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.29 E-value=0.0003 Score=68.37 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=19.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.|.| +|+|++||.|++||+|+++++
T Consensus 29 ~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 29 SGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp -EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred CEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 7999 999999999999999999986
No 77
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.03 E-value=0.0014 Score=55.90 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=34.1
Q ss_pred EEEEEE-EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418 104 CELLKW-FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (372)
Q Consensus 104 G~I~~w-~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~ 147 (372)
|.|+.+ +.++|+.|++|++++.||+.|...++.||.+|+|.++.
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 555555 34569999999999999999999999999999998885
No 78
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.84 E-value=0.0017 Score=55.96 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=38.1
Q ss_pred EEEEEE-EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418 104 CELLKW-FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (372)
Q Consensus 104 G~I~~w-~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~ 147 (372)
|.|+-+ +.+.|+.|++|+.++.||+-|...+|.||.+|.|..+.
T Consensus 39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 555554 45778999999999999999999999999999997775
No 79
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.79 E-value=0.0036 Score=59.76 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=51.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
+|.+.. .++.||.|++||+|+.|+. .+|+||.+|+|..+ +++|-.|+.|.-|+.|+.-.
T Consensus 172 ~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 172 DGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLTVTEGLKIGDVDPRG 230 (256)
T ss_pred CeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCCcCCCCEEEEECCCC
Confidence 566655 9999999999999999975 69999999999665 79999999999999997644
No 80
>PRK12784 hypothetical protein; Provisional
Probab=96.72 E-value=0.0084 Score=46.80 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=57.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCcee-eEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKAT-IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~-~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.|+|.++++.+++.|-+-+.|+-|+++.-. ..|.--.+|.|..+.+.+|+.|..+..|+.++.
T Consensus 13 ~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~ed 76 (84)
T PRK12784 13 EGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLED 76 (84)
T ss_pred ccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEee
Confidence 799999999999999999999999985544 558889999999999999999999999999975
No 81
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=96.52 E-value=0.0046 Score=58.43 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=30.2
Q ss_pred EEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.|+||++|+|..+.+.+|+.|..|++|+.|...
T Consensus 90 ~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~ 122 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLGDYVAPQAELFRVADL 122 (265)
T ss_pred EEECCCCeEEEEEEcCCCCEeCCCCceEEEEcC
Confidence 479999999999999999999999999998643
No 82
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.49 E-value=0.01 Score=59.79 Aligned_cols=32 Identities=38% Similarity=0.510 Sum_probs=28.9
Q ss_pred EEecCCCeEEEEEcc-CCCCeEecccEEEEEec
Q 017418 134 EITSRYKGKVAQLLH-APGNIVKVGETLLKLVV 165 (372)
Q Consensus 134 ei~ap~~G~v~~i~~-~eg~~v~vG~~la~i~~ 165 (372)
.|+||++|+|..+.+ ..|+.|..|++|+.|..
T Consensus 273 ~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~ 305 (423)
T TIGR01843 273 IIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVP 305 (423)
T ss_pred EEECCCCcEEEEEEEEccCceecCCCeeEEEec
Confidence 499999999999876 79999999999999964
No 83
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=96.48 E-value=0.007 Score=60.66 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=30.6
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..|+||.+|+|.+..+..|+.|..|.+|+.+-..
T Consensus 209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~ 242 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPL 242 (352)
T ss_pred CEEECCCCceEEeecccCCCeecCCCceEEEecc
Confidence 3389999999999999999999999999988653
No 84
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.35 E-value=0.0059 Score=46.80 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=31.5
Q ss_pred EEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
.|+||++|+|.++++++|+.|..|++|+.++...
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 5899999999999999999999999999998644
No 85
>PRK06748 hypothetical protein; Validated
Probab=96.14 E-value=0.012 Score=46.89 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=29.7
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
.+|..|. .|+|.++++++||.|..|++|+.|+.|
T Consensus 43 ~ei~Ap~------~G~v~~i~v~~Gd~V~vG~~la~I~~~ 76 (83)
T PRK06748 43 VEIKVGI------SGYIESLEVVEGQAIADQKLLITVRDD 76 (83)
T ss_pred EEEecCC------CEEEEEEEeCCCCEECCCCEEEEEECC
Confidence 4555555 899999999999999999999999876
No 86
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.05 E-value=0.021 Score=56.02 Aligned_cols=59 Identities=10% Similarity=0.083 Sum_probs=48.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe---CceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS---DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet---dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
.+=+...+++.||.|++||+|++|=. +....+|.||.+|+|. .....-.|..|+.|+.|
T Consensus 236 ~~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~--~~~~~p~v~~G~~l~~i 297 (298)
T cd06253 236 TSGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILF--TLREYPLVYEGSLVARI 297 (298)
T ss_pred CCeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEE--EeecCCeecCCceEEEe
Confidence 35567788999999999999999843 4567889999999994 45666788888888865
No 87
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.01 E-value=0.017 Score=47.77 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=38.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~ 147 (372)
-|.-.+-.|++||.|++||.|++.+ +-....|.|+.+|+|..|.
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIE 81 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEe
Confidence 4555678999999999999999996 4668899999999999885
No 88
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.84 E-value=0.012 Score=44.83 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=24.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418 102 AECELLKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 102 ~eG~I~~w~v~eGd~V~~Gd~l~~ve 127 (372)
.+|+|.+|++++||.|..||+|++||
T Consensus 45 ~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 45 EAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCEEEEEEEecCCCEECCCCEEEEEC
Confidence 48999999999999999999999986
No 89
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.78 E-value=0.026 Score=56.82 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=47.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet----dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
.|-+...+++.||.|++||+|++|-. +....+|.||.+|+| +.....-.|..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv--~~~~~~~~V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLL--FARASRRFVRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEE--EEecCCccccCCCeEEEe
Confidence 46677889999999999999999843 333455799999999 455677788888888866
No 90
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.58 E-value=0.039 Score=53.66 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=44.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe--CceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vet--dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
+-+.+..++.||.|++||+|+.|-. .....+|+||.+|+|. .....-.|..|+.|+.|
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~--~~~~~~~v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVI--GRNNLPLVNEGDALFHI 286 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEE--EecCCCccCCCCEEEEe
Confidence 3345679999999999999999953 2234789999999994 44555667778887765
No 91
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=95.47 E-value=0.052 Score=50.51 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=48.1
Q ss_pred ccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 302 AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 302 ~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
..-|+|.++.++|+|.|.+..++- +++|...++-++.+|+-++|.+.-.+++++ ++++++
T Consensus 23 ~~~p~~svT~~lDvT~l~~~~K~~---------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g-~v~~~d 82 (206)
T PF00302_consen 23 FDNPYFSVTVNLDVTNLYKYAKEK---------GLSFFPAYLYAIMKAANEIPEFRYRIVDDG-EVVYYD 82 (206)
T ss_dssp TSBEEEEEEEEEE-HHHHHHHHHT---------T--HHHHHHHHHHHHHTTSGGGCEEEETTS-CEEEES
T ss_pred CCCceEecceeEEhHHHHHHHHHc---------CCCcHHHHHHHHHHHHhcCHHHheeeeCCC-cEEEEC
Confidence 357999999999999999876542 689999999999999999999999998763 566654
No 92
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.42 E-value=0.052 Score=53.56 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=46.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet----dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.+-+....++.||.|++||+|++|-. .....+|.||.+|+|.- ....-.|..|+.|+.|.
T Consensus 251 ~~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~--~~~~~~v~~G~~l~~i~ 314 (316)
T cd06252 251 HPGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA--RRPPGLVRRGDCLAVLA 314 (316)
T ss_pred CCeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE--eeCCCccCCCCEEEEEe
Confidence 35567789999999999999999853 24567899999999954 34445677888888764
No 93
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=95.26 E-value=0.05 Score=54.02 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=46.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vet----dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
+=+....++.||.|++||+|++|-. .....+|.||.+|+|.. ....-.|..|+.|+.|
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence 4456788999999999999999853 23567899999999955 4556778888888765
No 94
>PRK07051 hypothetical protein; Validated
Probab=95.08 E-value=0.054 Score=42.54 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=24.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEE
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~ve 127 (372)
+|+|.+|++++||.|+.||+|++++
T Consensus 55 ~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 55 AGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEe
Confidence 8999999999999999999999985
No 95
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.07 E-value=0.032 Score=41.07 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=29.3
Q ss_pred EecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 135 i~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
++||++|+|..+++++|+.|..|++|+.++.
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 6899999999999999999999999999975
No 96
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.01 E-value=0.031 Score=48.80 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=31.9
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
...|+||..|++.++++++||.|..||+|+.|+.
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA 103 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA 103 (140)
T ss_pred CceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence 4679999999999999999999999999999984
No 97
>COG3608 Predicted deacylase [General function prediction only]
Probab=94.97 E-value=0.053 Score=53.78 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=46.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe---CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS---DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet---dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
++-+++.+|+.||.|++||+|+.|-. .+...||+|+.+|+|..+. ---.++.|+.+..+.
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v~ 325 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVVG 325 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeeec
Confidence 57788999999999999999998865 4788999999999997663 223344455555554
No 98
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=94.80 E-value=0.058 Score=51.75 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=37.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN 152 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~ 152 (372)
.|..-+.+|+|||.|+.||+|++-- .-..+-+.||.+|+|.+|.-.+.-
T Consensus 37 ~g~~Pkm~VkeGD~Vk~Gq~LF~dK-~~p~v~ftsPvsG~V~~I~RG~rR 85 (257)
T PF05896_consen 37 PGMKPKMLVKEGDRVKAGQPLFEDK-KNPGVKFTSPVSGTVKAINRGERR 85 (257)
T ss_pred CCCCccEEeccCCEEeCCCeeEeeC-CCCCcEEecCCCeEEEEEecCCCc
Confidence 3455688999999999999999531 224577999999999999764443
No 99
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.61 E-value=0.068 Score=51.99 Aligned_cols=56 Identities=25% Similarity=0.257 Sum_probs=40.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe--CceeeEEecCCCeEEEEEccCCCCeEecccEE
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQLLHAPGNIVKVGETL 160 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet--dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~l 160 (372)
.+-+.+.+++.||.|++||+|++|=. .....+|.||++|+|.-+. ..-.|..|+.|
T Consensus 230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 45567788999999999999999832 2446789999999995543 33455555544
No 100
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.53 E-value=0.053 Score=44.06 Aligned_cols=31 Identities=29% Similarity=0.574 Sum_probs=22.7
Q ss_pred EecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 135 i~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
|+||++|+|..+.+.+|+.|..|++|+.|..
T Consensus 2 i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 2 IRAPFDGVVVSINVQPGEVVSAGQPLAEIVD 32 (105)
T ss_pred EECCCCEEEEEEeCCCCCEECCCCEEEEEEc
Confidence 6677777777777777777777777777654
No 101
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=94.44 E-value=0.07 Score=41.23 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=28.1
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEE
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAV 126 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~v 126 (372)
-.++|.-|. +|+|.++++++||.|..||+|+.|
T Consensus 42 ~~~~v~a~~------~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 42 MEMEVEAPV------SGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEEEBSS------SEEEEEESSTTTEEEETTSEEEEE
T ss_pred cceEEECCC------CEEEEEEEECCCCEECCCCEEEEC
Confidence 345566665 899999999999999999999976
No 102
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=93.93 E-value=0.076 Score=46.96 Aligned_cols=45 Identities=27% Similarity=0.300 Sum_probs=35.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceee-EEecCCCeEEEEEc
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATI-EITSRYKGKVAQLL 147 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~-ei~ap~~G~v~~i~ 147 (372)
+|..+-..+.+||.|.+||.|+-+.|-|-++ -++||.+|+|.-+.
T Consensus 88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 7888899999999999999999999999865 59999999997664
No 103
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=93.85 E-value=0.043 Score=52.63 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=10.8
Q ss_pred CCeEEEEEccCCCCeEecccEEEEEe
Q 017418 139 YKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 139 ~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
..|+|.+|+|++|+.|+.|++|+.|+
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD 33 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLD 33 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE-
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEE
Confidence 44555555555555555555555554
No 104
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.84 E-value=0.096 Score=45.30 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=32.5
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...|.||.+|+|.++++.+|+.|..|++|+.++..
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEam 95 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAM 95 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEecc
Confidence 56799999999999999999999999999999854
No 105
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=93.33 E-value=0.24 Score=56.99 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=49.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
|...++.++.|+.+..++.....+.. -...|.||..|+|.++++++||.|+.|++|++++..
T Consensus 1047 Gq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iEam 1108 (1143)
T TIGR01235 1047 GQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAM 1108 (1143)
T ss_pred CeEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEEec
Confidence 46667778888887777665544322 235799999999999999999999999999999864
No 106
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=93.11 E-value=0.082 Score=50.66 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=20.8
Q ss_pred cceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418 101 IAECELLKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 101 ~~eG~I~~w~v~eGd~V~~Gd~l~~ve 127 (372)
...|.|.+++|++||.|++||+|++++
T Consensus 7 ~~~G~V~~i~V~eG~~VkkGq~L~~LD 33 (305)
T PF00529_consen 7 LVGGIVTEILVKEGQRVKKGQVLARLD 33 (305)
T ss_dssp SS-EEEEEE-S-TTEEE-TTSECEEE-
T ss_pred CCCeEEEEEEccCcCEEeCCCEEEEEE
Confidence 468999999999999999999999986
No 107
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=92.92 E-value=0.17 Score=50.27 Aligned_cols=40 Identities=20% Similarity=0.412 Sum_probs=34.4
Q ss_pred EEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 125 AVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 125 ~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.|+.+ .+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 43 ~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 43 YIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred EEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 44443 57899999999999999999999999999999753
No 108
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.81 E-value=0.16 Score=49.76 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=35.5
Q ss_pred EEEeCceeeEEecCCC---eEEEEEccCCCCeEecccEEEEEecC
Q 017418 125 AVQSDKATIEITSRYK---GKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 125 ~vetdK~~~ei~ap~~---G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.|+...-...|.++.+ |+|.++++++|+.|+.|++|+.|+..
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence 3444545567889999 99999999999999999999999864
No 109
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=92.75 E-value=0.17 Score=44.93 Aligned_cols=34 Identities=35% Similarity=0.436 Sum_probs=31.7
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..|.||..|+|.++++++||.|..|+.|+.++..
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEam 118 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQQVKVGQGLLILEAM 118 (153)
T ss_pred CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeec
Confidence 5699999999999999999999999999999754
No 110
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=92.69 E-value=0.13 Score=53.37 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=38.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEcc
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~ 148 (372)
.|.--+.+|++||+|++||+|++-.. -....+.||.+|+|..|..
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEec
Confidence 46667889999999999999997642 3678999999999999954
No 111
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=92.59 E-value=0.13 Score=50.38 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=32.3
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence 57899999999999999999999999999999754
No 112
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=92.19 E-value=0.26 Score=51.13 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=37.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEcc
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~ 148 (372)
-|.--+.+|++||+|++||.|++-... ....+.||.+|+|..|..
T Consensus 38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 466667899999999999999965432 578899999999999953
No 113
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=92.07 E-value=0.18 Score=48.88 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=27.6
Q ss_pred EEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 124 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 124 ~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
+.|+. -+..|.++.+|+| ++++++|+.|+.|++|+.++..
T Consensus 15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 15 GTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp EEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred EEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence 34444 4567999999999 9999999999999999999853
No 114
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=92.02 E-value=0.41 Score=44.97 Aligned_cols=55 Identities=20% Similarity=0.362 Sum_probs=45.2
Q ss_pred cEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEc
Q 017418 305 PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370 (372)
Q Consensus 305 Ph~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~ 370 (372)
|.|.++.++|+|+|++.-++ -+++|.+.++-|+..|+-++|.+--.+.++ +++++
T Consensus 31 ~~fsiT~~iDiT~l~~~~K~---------~~~~fy~~~ly~v~kavN~~~eFR~r~~~~--~v~~~ 85 (219)
T PRK13757 31 CTYNQTVQLDITAFLKTVKK---------NKHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIW 85 (219)
T ss_pred CceEEEEEEEHHHHHHHHHH---------cCCChHHHHHHHHHHHHhcCHhHheEEECC--eEEEE
Confidence 34999999999999976543 257888999999999999999999999644 56544
No 115
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=91.95 E-value=0.31 Score=49.84 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=37.4
Q ss_pred eEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 122 PLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 122 ~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
....|+. .-.+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 78 ~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 78 GLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred EEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence 4455665 3567899999999999999999999999999999754
No 116
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=91.86 E-value=0.36 Score=48.72 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=42.8
Q ss_pred cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 111 v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
++.|+....-+....|+.. -..+|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 41 v~~~~~~~~~~~~G~v~~~-~~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 41 LSPGSVNVLSELPGRTVPY-EVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred eEEEeccceEEEEEEEEEE-EEEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 3444444444455666654 367899999999999999999999999999999753
No 117
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=91.49 E-value=0.28 Score=50.11 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=26.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~ 131 (372)
.|.|.+++|++||.|++||+|+.|++...
T Consensus 66 ~G~V~~i~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 66 SGVVIDLDVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred CeEEEEEECCCcCEECCCCEEEEECcHHH
Confidence 79999999999999999999999987543
No 118
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=91.42 E-value=0.41 Score=47.95 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=34.7
Q ss_pred EEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 124 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 124 ~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
+.|+.. -...|.++.+|.|.++++++|+.|+.|++|+.|+.
T Consensus 54 G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 54 GKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 344433 34589999999999999999999999999999975
No 119
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=91.35 E-value=0.32 Score=46.90 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=32.3
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
+..|.++.+|+|.++++++|+.|+.|++|+.++..
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDD 60 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence 46899999999999999999999999999999753
No 120
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=91.34 E-value=0.26 Score=49.16 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=35.3
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCe
Q 017418 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~ 153 (372)
...|++||.|++||+|+|-. --..+-++||.+|+|..|.-.+-..
T Consensus 42 ~mkV~~gD~VkkGq~LfEdK-knpgv~~Tap~sG~V~aI~RG~KRv 86 (447)
T COG1726 42 SMKVREGDAVKKGQVLFEDK-KNPGVVFTAPVSGKVTAIHRGEKRV 86 (447)
T ss_pred cceeccCCeeeccceeeecc-cCCCeEEeccCCceEEEeeccccee
Confidence 56899999999999999742 1145779999999999987554433
No 121
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=91.09 E-value=0.33 Score=50.14 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=36.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~ 147 (372)
|.--+..|++||+|+.||+|++.+ ......+.||.+|+|..|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 444567999999999999999883 3468899999999998885
No 122
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.07 E-value=0.34 Score=48.75 Aligned_cols=43 Identities=26% Similarity=0.310 Sum_probs=34.9
Q ss_pred EEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 125 AVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 125 ~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
.|........|.++.+|+|.+++|.+|+.|+.|++|+.++...
T Consensus 36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 36 KVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred EEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 3445666667889999999999999999999999999997643
No 123
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=90.89 E-value=0.42 Score=49.49 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=32.7
Q ss_pred CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 129 DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 129 dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
+.-...|.++..|+|.+|+|++||.|+.|++|+.++..
T Consensus 56 ~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 56 AKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred cCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 33445788999999999999999999999999999754
No 124
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=90.79 E-value=0.39 Score=42.66 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.7
Q ss_pred cceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418 101 IAECELLKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 101 ~~eG~I~~w~v~eGd~V~~Gd~l~~ve 127 (372)
-.+|+|++|+++.||.|..||+|++|+
T Consensus 129 ~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 129 DKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 348999999999999999999999884
No 125
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=90.69 E-value=0.58 Score=47.16 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=42.2
Q ss_pred EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 110 ~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.++.|+.-..-.....|+.+ -..+|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 42 ~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 42 TVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 34444433333444566654 457899999999999999999999999999999754
No 126
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=90.50 E-value=0.4 Score=42.64 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=25.2
Q ss_pred CcceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418 100 GIAECELLKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 100 ~~~eG~I~~w~v~eGd~V~~Gd~l~~ve 127 (372)
+-.+|+|.+|+++.||.|..||+|++|+
T Consensus 129 A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 129 AEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred cCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 3458999999999999999999999885
No 127
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=90.48 E-value=0.9 Score=44.37 Aligned_cols=43 Identities=28% Similarity=0.288 Sum_probs=30.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe--CceeeEEecCCCeEEEEE
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQL 146 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vet--dK~~~ei~ap~~G~v~~i 146 (372)
+=|.+..++.||.|++||.|++|-. .....++.||.+|+|.-+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 4556677888888888888888742 122456788888888554
No 128
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.33 E-value=0.44 Score=48.68 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=32.3
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 44899999999999999999999999999999864
No 129
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=90.07 E-value=0.39 Score=47.21 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=31.7
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
+.|.++.+|.|.++++++|+.|+.|++|+.|+..
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence 5699999999999999999999999999999864
No 130
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=90.04 E-value=0.28 Score=38.26 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+.=+.++++.||.|++||+||+|=++.
T Consensus 31 ~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 31 AVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp T-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred CcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 334678999999999999999986543
No 131
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=90.02 E-value=0.5 Score=45.54 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=25.4
Q ss_pred CcceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418 100 GIAECELLKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 100 ~~~eG~I~~w~v~eGd~V~~Gd~l~~ve 127 (372)
.-.+|+|++|++++||.|..||+|++||
T Consensus 246 AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 246 ADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred cCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 3348999999999999999999999985
No 132
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=89.98 E-value=0.48 Score=49.31 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=26.4
Q ss_pred cceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 101 IAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 101 ~~eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
..+|+|.+|++++||.|..|++|+.|+.+
T Consensus 140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 140 PASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 35899999999999999999999999754
No 133
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=89.90 E-value=0.41 Score=48.56 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=32.9
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence 67899999999999999999999999999999864
No 134
>PF13437 HlyD_3: HlyD family secretion protein
Probab=89.89 E-value=0.77 Score=37.13 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=24.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.|.|..+.+++|+.|..|++|++|..
T Consensus 7 ~G~V~~~~~~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 7 DGVVVSINVQPGEVVSAGQPLAEIVD 32 (105)
T ss_pred CEEEEEEeCCCCCEECCCCEEEEEEc
Confidence 79999999999999999999999974
No 135
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=89.85 E-value=0.45 Score=51.95 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=35.6
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~ 147 (372)
|.--+.+|++||+|.+||+|++-+ .-....|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 455568999999999999999653 3357899999999998874
No 136
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=89.77 E-value=0.42 Score=47.08 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.4
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.+.|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 56899999999999999999999999999999753
No 137
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=89.76 E-value=1 Score=43.40 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=48.2
Q ss_pred EEEEEEEcCCCCeecCCCeE--EEEE-e-CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 104 CELLKWFVKEGDEIEEFQPL--CAVQ-S-DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l--~~ve-t-dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
+-+....++.||.|++||+| ..+- . +....++.||.+|+| +...+.-.|..|+.|+.+..
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~~ 291 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVAK 291 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEec
Confidence 44568899999999999999 5442 2 234568999999999 77788889999999998753
No 138
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.53 E-value=0.32 Score=50.30 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=26.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 102 AECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+.|.|.+++|++||.|++||+|+.++...
T Consensus 66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 66 SNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred CCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 36999999999999999999999997643
No 139
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=89.23 E-value=0.68 Score=45.30 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=30.3
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
.+|..|. .|+|.++++++||.|..|++|+.|+.+.
T Consensus 46 ~~~~a~~------~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 46 NEVEAPA------AGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred EEEecCC------CeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 4566665 8999999999999999999999998754
No 140
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.09 E-value=1 Score=39.11 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=43.1
Q ss_pred EEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EecCCCeEEEEE
Q 017418 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQL 146 (372)
Q Consensus 92 i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~e-i~ap~~G~v~~i 146 (372)
..+|- ||-++.-.+..|+.|.+||+++-+.|-|..+- +++|.+|+|.-+
T Consensus 94 l~iPv------EGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 94 LLIPV------EGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred EEEec------CcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 45665 89999999999999999999999999998765 899999999655
No 141
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=88.66 E-value=0.89 Score=45.52 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=25.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
.|+|.+++|++||+|+.|+.|+.|++.
T Consensus 123 sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 123 SGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred cceeeEEecCCCCcccCCceeEEecCC
Confidence 799999999999999999999999865
No 142
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=88.31 E-value=0.63 Score=47.22 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=35.6
Q ss_pred EEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 124 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 124 ~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..|+. .-..+|.+..+|+|.++++++|+.|+.|++|+.|+..
T Consensus 58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence 34443 3467899999999999999999999999999999754
No 143
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=87.33 E-value=1.4 Score=38.15 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=38.2
Q ss_pred eEEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEecCCCeEEEEE--------------------------------
Q 017418 103 ECELLKWFVKEGDEI----EEFQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------- 146 (372)
Q Consensus 103 eG~I~~w~v~eGd~V----~~Gd~l~~vetdK~~~ei~ap~~G~v~~i-------------------------------- 146 (372)
+|+++.+ -+.-|.| --|+-++..=++. .|.||++|+|..+
T Consensus 10 ~G~vi~l-~~v~D~vFs~~~lG~GvaI~p~~~---~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~g 85 (132)
T PF00358_consen 10 SGKVIPL-EEVPDPVFSQKMLGDGVAIIPSDG---KVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEG 85 (132)
T ss_dssp SEEEEEG-GGSSSHHHHTTSSSEEEEEEESSS---EEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTT
T ss_pred CcEEEEh-hhCCchHHCCCCCcCEEEEEcCCC---eEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcc
Confidence 5666653 2444444 3367777554442 6778888888776
Q ss_pred ---ccCCCCeEecccEEEEEec
Q 017418 147 ---LHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 147 ---~~~eg~~v~vG~~la~i~~ 165 (372)
++++|+.|+.|++|+.++.
T Consensus 86 F~~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 86 FETLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp EEESS-TTSEE-TTEEEEEE-H
T ss_pred eEEEEeCCCEEECCCEEEEEcH
Confidence 5779999999999999874
No 144
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=87.20 E-value=1.9 Score=46.46 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=32.2
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
-+|.||..|+|.++++++||.|..|++|++++...
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK 560 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK 560 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence 36999999999999999999999999999998643
No 145
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=87.18 E-value=1.1 Score=45.79 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=41.0
Q ss_pred cCCCCeecCCCeEEEEEeCc-eeeEEecCCCeEEEEEc-cCCCCeEecccEEEEEecC
Q 017418 111 VKEGDEIEEFQPLCAVQSDK-ATIEITSRYKGKVAQLL-HAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 111 v~eGd~V~~Gd~l~~vetdK-~~~ei~ap~~G~v~~i~-~~eg~~v~vG~~la~i~~~ 166 (372)
++.++.-..-+..+.|+.|. -...|.++++|+|.+++ +.+||.|+.|++|+.|...
T Consensus 101 v~~~~~~~~~~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~sp 158 (409)
T PRK09783 101 VTRGPLTFAQTFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 158 (409)
T ss_pred EEEeeccceEEEeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCH
Confidence 33344333333445565443 35689999999999998 9999999999999999753
No 146
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=87.07 E-value=1.4 Score=33.27 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=27.0
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEE
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAV 126 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~v 126 (372)
..+|.-|. +|+|++++++.|+.|..|+.|+.|
T Consensus 42 ~~~i~ap~------~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 42 TSDVEAPK------SGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEEcCC------CEEEEEEEeCCCCEECCCCEEEEC
Confidence 44565555 899999999999999999999864
No 147
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=87.05 E-value=0.48 Score=42.22 Aligned_cols=39 Identities=31% Similarity=0.354 Sum_probs=35.9
Q ss_pred EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEcc
Q 017418 110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148 (372)
Q Consensus 110 ~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~ 148 (372)
+-+.|-.|.+||.++-+|+-|+.-+|.+|.+|.|.+|.-
T Consensus 87 LPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe 125 (172)
T KOG3373|consen 87 LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINE 125 (172)
T ss_pred cCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecc
Confidence 347899999999999999999999999999999999863
No 148
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=86.76 E-value=2.2 Score=36.61 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.0
Q ss_pred ccCCCCeEecccEEEEEec
Q 017418 147 LHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 147 ~~~eg~~v~vG~~la~i~~ 165 (372)
++++||.|..|++|+.++.
T Consensus 85 ~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 85 HVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EecCCCEEcCCCEEEEEcH
Confidence 5779999999999998874
No 149
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=86.00 E-value=1.7 Score=31.30 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=26.5
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEE
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAV 126 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~v 126 (372)
...+..|. .|++.++++++|+.|..|++|++|
T Consensus 43 ~~~i~a~~------~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 43 TVEVEAPA------AGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEEEECCC------CEEEEEEeeCCcCEeCCCCEEEEC
Confidence 34555555 789999999999999999999874
No 150
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=85.94 E-value=1.1 Score=45.88 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=27.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 017418 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (372)
Q Consensus 102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~ 131 (372)
.+|+|.++++++||.|..|++|+.|++...
T Consensus 52 ~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 52 DAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred CCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 389999999999999999999999997644
No 151
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=85.71 E-value=1.8 Score=39.08 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=45.9
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEecCCCeEEEEE-------------------
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------- 146 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~----Gd~l~~vetdK~~~ei~ap~~G~v~~i------------------- 146 (372)
..|.-|- +|+++.+ -+.-|.|=. ||-++..=++ ..|.||++|+|..+
T Consensus 21 ~~i~aP~------~G~vi~L-~~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLI 90 (169)
T PRK09439 21 IEIIAPL------SGEIVNI-EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFV 90 (169)
T ss_pred eEEEecC------CeEEEEh-HHCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 3455554 6777775 344454433 7777766554 56778888887765
Q ss_pred ----------------ccCCCCeEecccEEEEEec
Q 017418 147 ----------------LHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 147 ----------------~~~eg~~v~vG~~la~i~~ 165 (372)
++++||.|..|++|+.++-
T Consensus 91 HiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 91 HFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred EEeecccccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence 5779999999999999874
No 152
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=85.56 E-value=0.76 Score=36.69 Aligned_cols=23 Identities=26% Similarity=0.638 Sum_probs=18.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 017418 106 LLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 106 I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
=++|++++||.|++||+|++++-
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEe
Confidence 35799999999999999999974
No 153
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=85.39 E-value=0.74 Score=48.20 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=35.1
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418 107 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (372)
Q Consensus 107 ~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~ 147 (372)
...+|++||.|.+||+|.+-+- ...-+.||.+|+|.+|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 5678999999999999997764 88899999999999997
No 154
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=85.22 E-value=2.3 Score=40.77 Aligned_cols=41 Identities=32% Similarity=0.460 Sum_probs=34.1
Q ss_pred EEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 124 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 124 ~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
..++. ....++.++..|.|.++++++|+.|+.|++|+.++.
T Consensus 59 G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 59 GRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 34443 333478888999999999999999999999999986
No 155
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=85.18 E-value=0.82 Score=43.92 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=25.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418 102 AECELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 102 ~eG~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 479999999999999999999999987
No 156
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=85.01 E-value=1.4 Score=45.25 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=25.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 102 AECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
.+|+|.++++++||.|..|++|+.|+..
T Consensus 94 ~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 94 ASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 4899999999999999999999999754
No 157
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=83.95 E-value=1.9 Score=38.44 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=24.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~ 131 (372)
+|+--+-++++||.|++||+|+++.-|..
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 46677889999999999999999987653
No 158
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=83.54 E-value=2.1 Score=43.98 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=27.1
Q ss_pred cceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 101 ~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
-.+|+|.++++++||.|..|++|++|+.+.
T Consensus 51 ~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 51 PAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 348999999999999999999999998654
No 159
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=83.34 E-value=3.2 Score=44.69 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=32.3
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...|.||.+|+|.++.+++|+.|..|++|+.++..
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieam 556 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAM 556 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEecc
Confidence 36799999999999999999999999999999754
No 160
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=83.30 E-value=1.4 Score=45.06 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=26.6
Q ss_pred cceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 101 IAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 101 ~~eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
..+|+|.+|++++||.|..|++|+.|+.+
T Consensus 49 ~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 49 PADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 34899999999999999999999999865
No 161
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=82.99 E-value=2.9 Score=35.69 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.0
Q ss_pred EEccCCCCeEecccEEEEEec
Q 017418 145 QLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 145 ~i~~~eg~~v~vG~~la~i~~ 165 (372)
+.++++||.|+.|++|+.++.
T Consensus 83 ~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 83 TSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred EEEecCCCEEcCCCEEEEEcH
Confidence 457889999999999999874
No 162
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=82.83 E-value=1.5 Score=47.06 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.4
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
..|.||..|.|.++++++||.|..|++|+.++...
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamK 552 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMK 552 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 47999999999999999999999999999998643
No 163
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=82.60 E-value=2.5 Score=45.48 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=32.2
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...|.||..|+|.++++++|+.|..|++|+.++..
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEam 558 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAM 558 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 45799999999999999999999999999999754
No 164
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=82.11 E-value=3.7 Score=37.53 Aligned_cols=53 Identities=25% Similarity=0.356 Sum_probs=40.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEE
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL 161 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la 161 (372)
+.|.. ++++|+.|++||-+..++-. .++++--|.+ .++.+++|+.|..|+.|.
T Consensus 130 ~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 130 RRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred cEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 44444 45899999999999999865 5566666665 267899999999999654
No 165
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=81.49 E-value=2.9 Score=37.30 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.4
Q ss_pred EccCCCCeEecccEEEEEec
Q 017418 146 LLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 146 i~~~eg~~v~vG~~la~i~~ 165 (372)
.++++||.|+.||+|..++-
T Consensus 91 ~~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 91 SLVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred EEeeCCCEEccCCEEEEECH
Confidence 36889999999999999874
No 166
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=81.10 E-value=3.4 Score=38.05 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=43.6
Q ss_pred eEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEE
Q 017418 103 ECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (372)
Q Consensus 103 eG~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~ 162 (372)
-|.|+-+.. ++|+.|++||-+..++- -.++.+--|.+-+. ++.+++|+.|..|+.|++
T Consensus 144 v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 144 VGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred eceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCEEEeeeEEeC
Confidence 466666554 69999999999999986 44455444444433 788999999999999873
No 167
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=80.74 E-value=3 Score=42.89 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=27.6
Q ss_pred CcceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 100 ~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+..+|+|.+|++++||.|..|++|++|+.++
T Consensus 46 a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 46 SRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 3458999999999999999999999998654
No 168
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=80.12 E-value=2.7 Score=37.96 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+|+--+++|++||+|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 4666799999999999999999998644
No 169
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=80.00 E-value=1.5 Score=37.56 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=23.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
+|+--++++++||+|++||+|+++.-+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 466679999999999999999999754
No 170
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=79.69 E-value=4.8 Score=37.30 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=41.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccE-EEE
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET-LLK 162 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~-la~ 162 (372)
+.|+. ++++|+.|++||-+..++-. .++++--|.+ .++.+++|+.|..|+. |+.
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~ 204 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR 204 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence 44544 46899999999999999866 4566666665 2788999999999984 443
No 171
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=79.51 E-value=1.6 Score=37.35 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+|+--++++++||+|++||+|+++.-+.
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4556789999999999999999997543
No 172
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=78.58 E-value=2.3 Score=45.05 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=30.9
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
-.+.||..|+|..+.|++|+.|..|++|++++.
T Consensus 576 ~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 576 GELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred CceecCCCceEEEEEecCCCEecCCCeEEEeEe
Confidence 359999999999999999999999999999985
No 173
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=78.51 E-value=8.5 Score=42.66 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=29.9
Q ss_pred EEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.|-||..|+|.++.|.+|+.|+.|++|+.++.
T Consensus 1081 higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieA 1112 (1149)
T COG1038 1081 HIGAPMPGVVVEVKVKKGDKVKKGDVLAVIEA 1112 (1149)
T ss_pred ccCCCCCCceEEEEEccCCeecCCCeeeehhh
Confidence 38899999999999999999999999999974
No 174
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=77.58 E-value=4.3 Score=37.77 Aligned_cols=60 Identities=10% Similarity=0.207 Sum_probs=48.2
Q ss_pred hcccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEc
Q 017418 300 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370 (372)
Q Consensus 300 ~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~ 370 (372)
++...||+.+.-+.|++.+ |.-+|+. +++|.++++-|+.+++.+|+++.-.+.++ +.++.
T Consensus 24 R~~~~p~y~i~~~LDvtn~---~~~vk~~------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~--~~~~~ 83 (219)
T COG4845 24 RLLQYPHYDINLQLDVTNF---YGYVKEN------GLSFFPALLYAVTRCANRHQEFRLRIQNG--QLGYW 83 (219)
T ss_pred hhcccceEeeeeeeehhHH---HHHHHHc------CCcchHHHHHHHHHHhcccHHhHhhhcCC--eeEEe
Confidence 4557899999999998765 4455432 79999999999999999999999888754 56554
No 175
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=77.37 E-value=3.2 Score=41.80 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=32.2
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
.+.|.+..+|+|.++++..++.|+.|++|+.|+..+
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~ 88 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRD 88 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcHH
Confidence 356889999999999999999999999999998643
No 176
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=77.19 E-value=2.4 Score=45.72 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=23.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+|+--+.+|++||+|++||+|++++-++
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~ 569 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDK 569 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHH
Confidence 4556688999999999999999997654
No 177
>PRK12999 pyruvate carboxylase; Reviewed
Probab=77.11 E-value=8.5 Score=44.67 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=31.8
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..|.||..|+|.++++++|+.|+.|++|+.++..
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leam 1110 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAM 1110 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCCEECCCCEEEEEEcc
Confidence 5699999999999999999999999999999854
No 178
>PRK12784 hypothetical protein; Provisional
Probab=76.73 E-value=4.1 Score=32.10 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=32.5
Q ss_pred EEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (372)
Q Consensus 134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~ 168 (372)
+|.||+-|+|.++++.++..|-.=++|+.|...+.
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg 41 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG 41 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence 58999999999999999999999999999987654
No 179
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=75.90 E-value=3.5 Score=42.64 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=26.5
Q ss_pred ceEEEEEEEcCCCCe-ecCCCeEEEEEeCc
Q 017418 102 AECELLKWFVKEGDE-IEEFQPLCAVQSDK 130 (372)
Q Consensus 102 ~eG~I~~w~v~eGd~-V~~Gd~l~~vetdK 130 (372)
..|+|.+|++++||. |..|++|++|+.+.
T Consensus 49 ~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 49 EEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 489999999999999 99999999998654
No 180
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=75.39 E-value=1.9 Score=37.35 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=21.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+|+--++++++||+|++||+|+++..++
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 4566799999999999999999997654
No 181
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=74.95 E-value=3.4 Score=48.13 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=32.0
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...|.||..|.|.++++++||.|..|++|+.++..
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsm 1166 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAM 1166 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEec
Confidence 45599999999999999999999999999999753
No 182
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=72.74 E-value=10 Score=41.29 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=42.3
Q ss_pred eEEEEEEEcCCCCeec---CCCeEEEEEeCceeeEEecCCCeEEEEE---------------------------------
Q 017418 103 ECELLKWFVKEGDEIE---EFQPLCAVQSDKATIEITSRYKGKVAQL--------------------------------- 146 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~---~Gd~l~~vetdK~~~ei~ap~~G~v~~i--------------------------------- 146 (372)
+|+++.+.--+.+... -||-++..=++ ..|.||++|+|..+
T Consensus 506 ~G~vi~l~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF 582 (648)
T PRK10255 506 TGDVVALDQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGF 582 (648)
T ss_pred CcEEEEcccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCc
Confidence 6777765332222332 27888866555 58899999998876
Q ss_pred --ccCCCCeEecccEEEEEec
Q 017418 147 --LHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 147 --~~~eg~~v~vG~~la~i~~ 165 (372)
++++||.|+.||+|+.++.
T Consensus 583 ~~~Vk~Gd~V~~G~~l~~~D~ 603 (648)
T PRK10255 583 KRLVEEGAQVSAGQPILEMDL 603 (648)
T ss_pred eEEecCCCEEcCCCEEEEEcH
Confidence 4678888999999888874
No 183
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=71.42 E-value=4.1 Score=44.13 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=22.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+|+--+++|++||+|++||+|++++-+.
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 4555688999999999999999997643
No 184
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=70.39 E-value=8.3 Score=39.40 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=26.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 102 AECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
.+|+|.++++++|+.|..|++|+.|+.+.
T Consensus 52 ~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 52 VAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 38999999999999999999999998654
No 185
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=70.24 E-value=5.5 Score=41.61 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=26.7
Q ss_pred CcceEEEEEEEcCCCC-eecCCCeEEEEEeCc
Q 017418 100 GIAECELLKWFVKEGD-EIEEFQPLCAVQSDK 130 (372)
Q Consensus 100 ~~~eG~I~~w~v~eGd-~V~~Gd~l~~vetdK 130 (372)
+..+|+|.+|++++|+ .|+.|++|++|+.+.
T Consensus 50 A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 50 AVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 3458999999999995 799999999997654
No 186
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=67.99 E-value=19 Score=36.49 Aligned_cols=128 Identities=17% Similarity=0.170 Sum_probs=70.2
Q ss_pred EcCCCCeecCCCeEEEEE-eCceeeEEecC--CCeEEEEEccCCCCeEecccEEEEEecCCCCCC--CC-----CCCCCC
Q 017418 110 FVKEGDEIEEFQPLCAVQ-SDKATIEITSR--YKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVP--TP-----SSDVLE 179 (372)
Q Consensus 110 ~v~eGd~V~~Gd~l~~ve-tdK~~~ei~ap--~~G~v~~i~~~eg~~v~vG~~la~i~~~~~~~~--~~-----~~~~~~ 179 (372)
.+++||.|..||+|..|. +.-.++.|-.| ..|+|..+ ..+|+ ..+-+.++.++.++.... .. ..+.+.
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~-~~~~~~~~~~~~~g~~~~~~~~~~~Pv~~~~P~ 131 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD-YTVDDVILEVEFDGKKEEITMVQKWPVRQPRPV 131 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC-eeEEEEEEEEEeCCeEeccccceeeecccCCCc
Confidence 468999999999999885 43355665554 58999765 46666 456678888875332110 00 000000
Q ss_pred CCCCCCCCCCCCC--------CC-CCC-----CCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHH
Q 017418 180 SVKPPGSENSPDS--------KL-NKD-----TVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239 (372)
Q Consensus 180 ~~~~~~~~~~~~~--------~~-~~~-----~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~ 239 (372)
........+-... .. ... .+.+.-=|-....|++....|+--+-|-|..|+=..+=++.+
T Consensus 132 ~~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 132 KEKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSNSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred cccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHHHHHHHhCCCCCEEEEEEeCCChHHHHHHHHHH
Confidence 0000000100000 00 000 001111255667899998888866689999888666555554
No 187
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=67.84 E-value=5.6 Score=42.33 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=25.2
Q ss_pred CcceEEEEEEEcCCCC-eecCCCeEEEEEe
Q 017418 100 GIAECELLKWFVKEGD-EIEEFQPLCAVQS 128 (372)
Q Consensus 100 ~~~eG~I~~w~v~eGd-~V~~Gd~l~~vet 128 (372)
+..+|+|.++++++|+ .|..|++||++..
T Consensus 160 a~~~G~l~ki~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 160 CMEEGYLAKIVKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred CCCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence 3458999999999996 7999999998853
No 188
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=67.75 E-value=7.3 Score=37.47 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=29.1
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
+.-|+||++|++.. .++-|+.|..|++|+.+..
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 45599999999965 7999999999999999964
No 189
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=66.01 E-value=12 Score=40.56 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=44.7
Q ss_pred eEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEecCCCeEEEEE--------------------------------
Q 017418 103 ECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------- 146 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~----Gd~l~~vetdK~~~ei~ap~~G~v~~i-------------------------------- 146 (372)
+|+++.+ .+.-|.|=. ||-++..=+| -.|.||++|+|..+
T Consensus 486 ~G~v~~L-~~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~g 561 (627)
T PRK09824 486 TGEVVPL-EQVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKF 561 (627)
T ss_pred ceEEeeH-HHCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCC
Confidence 6787775 356666654 7888765444 48999999998876
Q ss_pred ---ccCCCCeEecccEEEEEec
Q 017418 147 ---LHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 147 ---~~~eg~~v~vG~~la~i~~ 165 (372)
++++||.|+.||+|+.++.
T Consensus 562 F~~~v~~Gd~V~~G~~l~~~D~ 583 (627)
T PRK09824 562 FTAHVNVGDKVNTGDLLIEFDI 583 (627)
T ss_pred ceEEecCCCEEcCCCEEEEEcH
Confidence 5668899999999998874
No 190
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=65.89 E-value=14 Score=39.98 Aligned_cols=59 Identities=24% Similarity=0.321 Sum_probs=43.8
Q ss_pred eEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEecCCCeEEEEE--------------------------------
Q 017418 103 ECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------- 146 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~----Gd~l~~vetdK~~~ei~ap~~G~v~~i-------------------------------- 146 (372)
+|+++.. .+.-|.|=. ||-++..=+| ..|.||++|+|..+
T Consensus 470 ~G~~~~l-~~v~D~vFs~~~~G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~g 545 (610)
T TIGR01995 470 AGEMLPL-NEVPDEVFSSGAMGKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEG 545 (610)
T ss_pred ceEEeeH-hhCCCccccccCcCCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCC
Confidence 6777775 455555544 7777765444 47999999988776
Q ss_pred ---ccCCCCeEecccEEEEEec
Q 017418 147 ---LHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 147 ---~~~eg~~v~vG~~la~i~~ 165 (372)
++++||.|+.||+|+.++.
T Consensus 546 F~~~v~~g~~V~~G~~l~~~d~ 567 (610)
T TIGR01995 546 FEILVKVGDHVKAGQLLLTFDL 567 (610)
T ss_pred eEEEecCcCEEcCCCEEEEecH
Confidence 5778888999999988874
No 191
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=64.21 E-value=9.9 Score=36.57 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=39.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
|.|+ | ..+|+.|++||-+..++-. .++.+--|.+-+--...+.+|+.|..|+.|+.+
T Consensus 202 g~I~-~-~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 202 NSIE-L-THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred eEEE-E-ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 4444 2 4579999999999988877 555554444322224567889999999988753
No 192
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=62.75 E-value=20 Score=34.56 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=39.4
Q ss_pred EEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 106 I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
|+.|. .+|+.|++||.+..++-. .++.+--|. |.+ ++.++.|+.|..|+.|+.|
T Consensus 212 i~~~~-~~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 212 IQTYE-YENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred eeeec-cCCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCCEEEcchhhccC
Confidence 34443 459999999999999874 454444443 334 6779999999999999764
No 193
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=62.09 E-value=8.2 Score=37.60 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
.-..|++++||.|+.||+|++++-+
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEecc
Confidence 4568999999999999999998744
No 194
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=61.55 E-value=21 Score=38.32 Aligned_cols=55 Identities=22% Similarity=0.307 Sum_probs=41.6
Q ss_pred EcCCCCeecCCCeEEEE-EeCceeeEEec--CCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 110 FVKEGDEIEEFQPLCAV-QSDKATIEITS--RYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 110 ~v~eGd~V~~Gd~l~~v-etdK~~~ei~a--p~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.+++||.|..||++.+| ||.-..+-|-. ...|+|.+| +.+|+ ..+.++|+.++..
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~~ 180 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEFQ 180 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEeeC
Confidence 58889999999999977 45545555544 457999877 56676 5778999999853
No 195
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.13 E-value=11 Score=36.63 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 017418 106 LLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 106 I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
-++|++++|+.|++||+|++++-
T Consensus 65 ~v~~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 65 EVELHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEE
Confidence 36999999999999999999974
No 196
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=56.85 E-value=13 Score=36.20 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=29.3
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
..-++||.+|++ ...++.|+.|..||+|++|-.
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~d 263 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVD 263 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEEC
Confidence 557999999988 577899999999999999975
No 197
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=56.79 E-value=19 Score=38.01 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=34.6
Q ss_pred EEeCceeeEEecCCCeEEEEE------------------------ccCCCCeEecccEEEEEecCC
Q 017418 126 VQSDKATIEITSRYKGKVAQL------------------------LHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 126 vetdK~~~ei~ap~~G~v~~i------------------------~~~eg~~v~vG~~la~i~~~~ 167 (372)
+..-+.+.+|.|+.+|+|..| +++.||.|..|++|++|-.++
T Consensus 407 ~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~ 472 (493)
T TIGR02645 407 IEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAES 472 (493)
T ss_pred cCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCC
Confidence 444577889999999999887 577999999999999997433
No 198
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=56.34 E-value=8.3 Score=41.93 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=30.4
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
-.|-||..|+|..|.+++|+.|+.|++|+++..
T Consensus 1107 g~igAPMpG~vieikvk~G~kV~Kgqpl~VLSA 1139 (1176)
T KOG0369|consen 1107 GHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSA 1139 (1176)
T ss_pred ccccCCCCCceEEEEEecCceecCCCceEeeec
Confidence 348899999999999999999999999999964
No 199
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=55.94 E-value=13 Score=36.04 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=22.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
+|--++|++++|+.|+.||+|++++-
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEEE
Confidence 46667899999999999999999974
No 200
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=55.43 E-value=15 Score=39.95 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~ 131 (372)
+|+--+.+|++||+|++||+|++++-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 45556889999999999999999986543
No 201
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=54.60 E-value=16 Score=34.71 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=36.0
Q ss_pred CCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEE
Q 017418 114 GDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (372)
Q Consensus 114 Gd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~ 162 (372)
|+.|++||-|..++-. .++.+--|.+-+-....+.+|+.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 9999999999999874 45555544432222577899999999999864
No 202
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=54.50 E-value=17 Score=36.88 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=40.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc-------cCCCCeEecccEEEEE
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL-------HAPGNIVKVGETLLKL 163 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~-------~~eg~~v~vG~~la~i 163 (372)
+|+-+.+.+.|.... +...++.--+|-|..+|+|.++. |++||.|+.||+|..=
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG 227 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISG 227 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEee
Confidence 788888877765543 23334455788999999999986 6688999999998753
No 203
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.68 E-value=14 Score=36.10 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.-++|++++|+.|++||+|++++-
T Consensus 65 ~~v~~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 65 ITVTLAVADGERFEAGDILATVTG 88 (281)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEe
Confidence 456999999999999999999874
No 204
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=53.56 E-value=16 Score=35.70 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=29.2
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
..-++||.+|.+ ...++.|+.|+.|++|+.|-.
T Consensus 229 ~~~v~A~~~Gl~-~~~~~~G~~V~~Gq~lg~i~d 261 (298)
T cd06253 229 VVYVNAETSGIF-VPAKHLGDIVKRGDVIGEIVD 261 (298)
T ss_pred eEEEEcCCCeEE-EECcCCCCEECCCCEEEEEeC
Confidence 457999999988 566899999999999999975
No 205
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=53.51 E-value=71 Score=29.11 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=48.5
Q ss_pred CCCceEEEEccCCCCCcceEEEEEEEcCCCCeec--------CCCe-EEEEEeCceeeEEecCCCeEE-EE--EccCCCC
Q 017418 85 PASGIVDVPLAQTGEGIAECELLKWFVKEGDEIE--------EFQP-LCAVQSDKATIEITSRYKGKV-AQ--LLHAPGN 152 (372)
Q Consensus 85 ~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~--------~Gd~-l~~vetdK~~~ei~ap~~G~v-~~--i~~~eg~ 152 (372)
...+..-+.+|- +|+|.+....+|+... +++- ++.+||+.-.+-+.. ..|.+ .+ .++++|+
T Consensus 68 sp~DyHr~haP~------~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~-v~~~~~~~i~~~~~~g~ 140 (189)
T TIGR00164 68 SPFDVHVNRAPA------GGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQ-IAGFVARRIVCYVKEGE 140 (189)
T ss_pred CCcccceEEccc------ccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEE-ECeEEccEEEEecCCCC
Confidence 344777788887 8999998888887433 3333 356777643222221 12322 22 3567899
Q ss_pred eEecccEEEEEecC
Q 017418 153 IVKVGETLLKLVVG 166 (372)
Q Consensus 153 ~v~vG~~la~i~~~ 166 (372)
.+..|+.++.+.-+
T Consensus 141 ~v~kGeeiG~f~fG 154 (189)
T TIGR00164 141 KVSRGQRIGMIRFG 154 (189)
T ss_pred EEecCcEEEEEecC
Confidence 99999999999765
No 206
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=53.40 E-value=14 Score=36.12 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
--++|++++|+.|++||+|++++-
T Consensus 61 ~~v~~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 61 LTIDDAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEe
Confidence 346899999999999999998873
No 207
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=53.25 E-value=11 Score=38.97 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=19.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEE
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~ve 127 (372)
-+-=+.++++.||.|++||+|+.|=
T Consensus 378 ~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 378 YSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred cccCeEeccCCcCEeCCCCeEEEEE
Confidence 3444678889999999999998875
No 208
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=53.17 E-value=32 Score=40.43 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=31.5
Q ss_pred EEEcCCCCeecCCCeEEEEEe-------CceeeEEecCCCeEEEE
Q 017418 108 KWFVKEGDEIEEFQPLCAVQS-------DKATIEITSRYKGKVAQ 145 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~vet-------dK~~~ei~ap~~G~v~~ 145 (372)
-++|+.|+.|+++|+|+|+-+ +|+.-.|.|+.+|.|..
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~f 448 (1331)
T PRK02597 404 LLFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVRF 448 (1331)
T ss_pred EEEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEEE
Confidence 358999999999999999975 34666799999997653
No 209
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=53.12 E-value=13 Score=29.52 Aligned_cols=23 Identities=30% Similarity=0.231 Sum_probs=16.5
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 017418 106 LLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 106 I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
+....|++||.|++||.|+.+..
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g~ 74 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVGN 74 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEBS
T ss_pred cccccceecccccCCCEEEecCC
Confidence 44556889999999999998874
No 210
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=52.70 E-value=12 Score=38.92 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEE
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~ve 127 (372)
-+-=+.++++.||.|++||+||.|=
T Consensus 379 ~~aGi~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 379 YSVGLTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred cCCCeEEccCCcCEECCCCeEEEEe
Confidence 3444688999999999999999875
No 211
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=52.00 E-value=18 Score=35.14 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=29.2
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..++||.+|.+. ..++.||.|..|++|+.|...
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~ 252 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDP 252 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEECC
Confidence 579999999985 579999999999999999753
No 212
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.69 E-value=16 Score=35.66 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEEcCCCCeecCCCeEEEEEeC
Q 017418 106 LLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 106 I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
-++|++++|+.|++||+|++++-+
T Consensus 67 ~~~~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 67 AVHWQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEEc
Confidence 378999999999999999999743
No 213
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=51.66 E-value=22 Score=34.26 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=30.2
Q ss_pred cCCCCeecC-CCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEE
Q 017418 111 VKEGDEIEE-FQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (372)
Q Consensus 111 v~eGd~V~~-Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~ 162 (372)
+..|+.|.+ |++|++.. .-++++|++|.+. +-....+.+|+..+.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl---~~p~~~~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCVL---IMPSLRPLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEEE---EccCCCCCCCceeee
Confidence 466888888 88888742 2788888888662 334444447766554
No 214
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=51.44 E-value=19 Score=34.99 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=29.7
Q ss_pred ceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 130 KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 130 K~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
....-++||..|.+ ...++.|+.|+.|++|+.+-.
T Consensus 221 ~~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~d 255 (288)
T cd06254 221 DDVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVTD 255 (288)
T ss_pred cCCEEEecCCCeEE-EEecCCCCEecCCCEEEEEEC
Confidence 34467899999988 566899999999999999964
No 215
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=51.16 E-value=16 Score=35.36 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.-++|++++|+.|+.||+|++++-
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G 79 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEG 79 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEE
Confidence 446899999999999999999874
No 216
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.89 E-value=16 Score=35.73 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.-++|++++|+.|++||+|++++-
T Consensus 72 ~~~~~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 72 VSFTPLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEEEEEcCCCCEecCCCEEEEEEE
Confidence 345799999999999999999974
No 217
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=50.51 E-value=26 Score=27.23 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418 138 RYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (372)
Q Consensus 138 p~~G~v~~i~~~eg~~v~vG~~la~i~~~~~ 168 (372)
+..|+. ++.+.||.|..|++|++|-..++
T Consensus 30 ~~vGi~--l~~k~Gd~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 30 PAVGIE--LHKKVGDRVEKGDPLATIYANDE 58 (75)
T ss_dssp TT-EEE--ESS-TTSEEBTTSEEEEEEESSS
T ss_pred cCcCeE--ecCcCcCEECCCCeEEEEEcCCh
Confidence 445654 88999999999999999986543
No 218
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=50.47 E-value=17 Score=35.84 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.-++|++++|+.|++||+|++++-
T Consensus 85 ~~v~~~~~dG~~v~~G~~i~~i~G 108 (296)
T PRK09016 85 VTIEWHVDDGDVITANQTLFELTG 108 (296)
T ss_pred eEEEEEcCCCCEecCCCEEEEEEE
Confidence 346899999999999999998874
No 219
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=50.27 E-value=24 Score=29.11 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=33.4
Q ss_pred CCCeecCCCeEEEEEe-CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 113 EGDEIEEFQPLCAVQS-DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 113 eGd~V~~Gd~l~~vet-dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
+.....++..|-.+.. ++..+.+ ....|.-.+.+|++||.|..||.|+..+.
T Consensus 11 ~~K~~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~~ 63 (101)
T PF13375_consen 11 EHKELSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVGDKVKKGQLIAEAEG 63 (101)
T ss_pred CccccccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCCCEEcCCCEEEecCC
Confidence 3344555555555542 3333333 33456566788999999999999998753
No 220
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.08 E-value=17 Score=35.71 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.-++|++++||.|++||+|++++-
T Consensus 82 ~~v~~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 82 IEVTWRYREGDRMTADSTVCELEG 105 (294)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEEe
Confidence 346899999999999999998763
No 221
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=49.94 E-value=39 Score=38.85 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=47.8
Q ss_pred EEccCCCCCcceEEEEEEE----cCCCCeecCCCeEEEEE-eCceeeEE--ecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 92 VPLAQTGEGIAECELLKWF----VKEGDEIEEFQPLCAVQ-SDKATIEI--TSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 92 i~~P~lg~~~~eG~I~~w~----v~eGd~V~~Gd~l~~ve-tdK~~~ei--~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
|.+|.|... .+|. +++||+|.-||++.+|. |.=.++.| +....|+|..| +.+|+ ..+-++|+.++
T Consensus 107 ~~~~~l~~~------~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~-~~~~~~~~~~~ 178 (1017)
T PRK14698 107 ISAPALPRD------KKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE-YTIEEVIAKVK 178 (1017)
T ss_pred CCCCCCCCC------CeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC-cceeeEEEEEE
Confidence 456766544 2453 68899999999999885 44445555 44458999887 56777 46678999998
Q ss_pred cC
Q 017418 165 VG 166 (372)
Q Consensus 165 ~~ 166 (372)
..
T Consensus 179 ~~ 180 (1017)
T PRK14698 179 TP 180 (1017)
T ss_pred cC
Confidence 63
No 222
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=49.23 E-value=18 Score=35.84 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.-++|++++|+.|++|++|++++-
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEE
Confidence 446799999999999999999874
No 223
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=49.06 E-value=21 Score=36.00 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=28.3
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.-++||..|.+ ...++.|+.|+.|++|+.|-.
T Consensus 290 ~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~d 321 (359)
T cd06250 290 EMLYAPAGGMV-VYRAAPGDWVEAGDVLAEILD 321 (359)
T ss_pred EEEeCCCCeEE-EEecCCCCEecCCCEEEEEEC
Confidence 35899999988 566899999999999999975
No 224
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.97 E-value=18 Score=35.44 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
.-++|++++|+.|++||+|++++-+
T Consensus 76 ~~v~~~~~dG~~v~~g~~i~~i~G~ 100 (289)
T PRK07896 76 YEVLDRVEDGARVPPGQALLTVTAP 100 (289)
T ss_pred eEEEEEcCCCCEecCCCEEEEEEEC
Confidence 4568999999999999999988743
No 225
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=48.90 E-value=15 Score=38.17 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=22.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 102 AECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+-+.=+.++++.||.|++||+|+.|=.++
T Consensus 373 d~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 373 DLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred CcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 34445688999999999999999886544
No 226
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.87 E-value=18 Score=35.08 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=20.0
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 017418 106 LLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 106 I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
-++|++++|+.|++||+|++++-
T Consensus 59 ~~~~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 59 ECVFTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 36899999999999999998874
No 227
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=48.75 E-value=59 Score=25.59 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=33.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
+|+|+.+--.. ...-...|+...-...+... +..+.++.|+.|+.|+.|+.+....
T Consensus 21 ~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y~~----l~~~~v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 21 DGKVVFVGEDP-----GYGNYVIIQHGNGYITVYGH----LDSVSVKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp SEEEEEEEEET-----TTEEEEEEEETTSEEEEEEE----ESEESS-TTSEE-TTCEEEEEBSCS
T ss_pred cEEEEEEEecc-----CCccEEEEEeCCcCCEEEec----cccccceecccccCCCEEEecCCCC
Confidence 78888776532 22333445544332222222 5556799999999999999998543
No 228
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=48.67 E-value=18 Score=34.85 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
|.-++|++++|+.|+.||+|++++-+
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEEc
Confidence 45568999999999999999999743
No 229
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=48.49 E-value=35 Score=31.88 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=27.7
Q ss_pred EEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418 91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 91 ~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~ve 127 (372)
.|.-|- .|.|..+++.+|+.|..|++|+.|-
T Consensus 90 ~i~AP~------dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 90 EVRSPF------DGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEECCC------CeEEEEEEcCCCCEeCCCCceEEEE
Confidence 467776 8999999999999999999999875
No 230
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.21 E-value=19 Score=35.16 Aligned_cols=25 Identities=4% Similarity=0.130 Sum_probs=21.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
+.-++|++++|+.|++||+|++++-
T Consensus 69 ~~~~~~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 69 EIEMRRHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred ceEEEEEeCCCCEEcCCCEEEEEEE
Confidence 4557999999999999999999874
No 231
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=48.21 E-value=16 Score=37.57 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=21.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418 102 AECELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 102 ~eG~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
+-+.=+.++++.||.|++||+|+.|=+
T Consensus 371 d~~aGi~l~~k~G~~V~~g~~l~~i~~ 397 (405)
T TIGR02644 371 DHEAGIYLHKKTGDRVKKGDPLATLYS 397 (405)
T ss_pred CcCCCeEEecCCcCEeCCCCeEEEEeC
Confidence 344446889999999999999998853
No 232
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=47.94 E-value=14 Score=38.34 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=25.7
Q ss_pred CCcceEEEEEEEcCCC-CeecCCCeEEEEE
Q 017418 99 EGIAECELLKWFVKEG-DEIEEFQPLCAVQ 127 (372)
Q Consensus 99 ~~~~eG~I~~w~v~eG-d~V~~Gd~l~~ve 127 (372)
|..++|.|.+++++|| .-|..|.+||.|-
T Consensus 85 E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 85 EAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred eeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 4566999999999999 9999999999663
No 233
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=47.33 E-value=23 Score=41.93 Aligned_cols=53 Identities=21% Similarity=0.331 Sum_probs=46.6
Q ss_pred CCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 113 EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 113 eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.|-.+..|--.|.+|-+.--..+++|..|.+.+.+|+.|+.|.+|++-|+++.
T Consensus 666 ~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEv 718 (2196)
T KOG0368|consen 666 DGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEV 718 (2196)
T ss_pred ceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeeheh
Confidence 35567788888888887777889999999999999999999999999998874
No 234
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=46.51 E-value=24 Score=35.10 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=29.0
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
..-++||.+|++ ...++.|+.|..|++|+.|-.
T Consensus 255 ~~~v~Ap~~Gi~-~~~v~~G~~V~~G~~lg~I~d 287 (325)
T TIGR02994 255 DCFIFAEDDGLI-EFMIDLGDPVSKGDVIARVYP 287 (325)
T ss_pred CeEEEcCCCeEE-EEecCCCCEeCCCCEEEEEEC
Confidence 346999999988 467999999999999999975
No 235
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=45.96 E-value=22 Score=34.68 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
--++|++++|+.|+.|++|++++-
T Consensus 60 ~~~~~~~~dG~~v~~g~~i~~~~G 83 (277)
T TIGR01334 60 ASIDYAVPSGSRALAGTLLLEAKG 83 (277)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEe
Confidence 446899999999999999998874
No 236
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.94 E-value=22 Score=34.71 Aligned_cols=24 Identities=8% Similarity=0.194 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.-++|++++|+.|+.|++|++++-
T Consensus 58 ~~v~~~~~dG~~v~~g~~i~~i~G 81 (278)
T PRK08385 58 VKVEVRKRDGEEVKAGEVILELKG 81 (278)
T ss_pred CEEEEEcCCCCEecCCCEEEEEEE
Confidence 446888999999999999888874
No 237
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=45.81 E-value=19 Score=37.94 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.2
Q ss_pred CcceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418 100 GIAECELLKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 100 ~~~eG~I~~w~v~eGd~V~~Gd~l~~ve 127 (372)
-++.+-=+.++++.||.|++||+|+.|=
T Consensus 442 p~d~~aGi~l~~k~Gd~V~~Gd~l~~i~ 469 (493)
T TIGR02645 442 PNDKGAGVELHVKVGDQVKKGDPLYTIY 469 (493)
T ss_pred CcCcCcCeEEeccCCCEecCCCeEEEEE
Confidence 3445555789999999999999999885
No 238
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=45.78 E-value=24 Score=35.94 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.0
Q ss_pred eEEEEEE-------EcCCCCeecCCCeEEE
Q 017418 103 ECELLKW-------FVKEGDEIEEFQPLCA 125 (372)
Q Consensus 103 eG~I~~w-------~v~eGd~V~~Gd~l~~ 125 (372)
+|.|+++ .|++||.|++||+|..
T Consensus 197 dGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 197 DGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 4555544 5789999999999984
No 239
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=45.59 E-value=26 Score=34.17 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=39.2
Q ss_pred EEEEEEcCC----CCeecCCCeEEEEEeCceeeEEecCCCeEEE-EEccCCCCeEecccEEEEEe
Q 017418 105 ELLKWFVKE----GDEIEEFQPLCAVQSDKATIEITSRYKGKVA-QLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 105 ~I~~w~v~e----Gd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~-~i~~~eg~~v~vG~~la~i~ 164 (372)
.++.|.... |..|++||-+..++-. .++.+--+.+ .+. ...+.+|+.|..|+.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 444554432 7799999999988864 4444443333 332 23478999999999998764
No 240
>PRK04350 thymidine phosphorylase; Provisional
Probab=45.56 E-value=36 Score=35.92 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=34.3
Q ss_pred EEeCceeeEEecCCCeEEEEE------------------------ccCCCCeEecccEEEEEecC
Q 017418 126 VQSDKATIEITSRYKGKVAQL------------------------LHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 126 vetdK~~~ei~ap~~G~v~~i------------------------~~~eg~~v~vG~~la~i~~~ 166 (372)
+..-+.+.+|.|+.+|+|..| +.+.||.|..|++|++|-.+
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 445677889999999999887 57799999999999999743
No 241
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=45.42 E-value=23 Score=34.25 Aligned_cols=22 Identities=32% Similarity=0.741 Sum_probs=19.8
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 017418 107 LKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 107 ~~w~v~eGd~V~~Gd~l~~vet 128 (372)
++|++++|+.|+.||+|++++-
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEE
Confidence 4799999999999999999874
No 242
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=45.41 E-value=38 Score=34.44 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=38.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc-------cCCCCeEecccEEEEE
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL-------HAPGNIVKVGETLLKL 163 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~-------~~eg~~v~vG~~la~i 163 (372)
+|+-..+.+.|.....+ .+.+..--+|-|..+|+|.++. |++||.|+.||.|..=
T Consensus 163 ~GTrl~i~v~Ek~~~p~------~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIsG 224 (382)
T TIGR02876 163 RGTTLVIKVVEKQEPKP------VLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLISG 224 (382)
T ss_pred EeEEEEEEEEecCCCCC------ccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEEe
Confidence 78888887777653211 1122334578899999999986 6678899999998753
No 243
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=45.28 E-value=34 Score=35.55 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=30.7
Q ss_pred CceeeEEecCCCeEEEEE-------------------------------ccCCCCeEecccEEEEEecCC
Q 017418 129 DKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 129 dK~~~ei~ap~~G~v~~i-------------------------------~~~eg~~v~vG~~la~i~~~~ 167 (372)
-+-..+|.|+.+|+|..| +.+.||.|..|++|++|-.++
T Consensus 336 a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~~ 405 (437)
T TIGR02643 336 APLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAAD 405 (437)
T ss_pred CCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECCC
Confidence 455677788888888776 567899999999999997433
No 244
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=44.73 E-value=37 Score=35.87 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=33.4
Q ss_pred EEeCceeeEEecCCCeEEEEE------------------------ccCCCCeEecccEEEEEecC
Q 017418 126 VQSDKATIEITSRYKGKVAQL------------------------LHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 126 vetdK~~~ei~ap~~G~v~~i------------------------~~~eg~~v~vG~~la~i~~~ 166 (372)
+-.-+.+.+|.|+.+|+|..| +.+.||.|..|++|++|-.+
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECC
Confidence 334566788899999998877 57799999999999999743
No 245
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=44.69 E-value=30 Score=40.91 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=33.3
Q ss_pred EEEcCCCCeecCCCeEEEEEe--------CceeeEEecCCCeEEEEEcc
Q 017418 108 KWFVKEGDEIEEFQPLCAVQS--------DKATIEITSRYKGKVAQLLH 148 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~vet--------dK~~~ei~ap~~G~v~~i~~ 148 (372)
.++|+.|+.|++||+|||+.. +|+...|-+..+|.|..-..
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~~~~ 453 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHWSTD 453 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEcccc
Confidence 568999999999999999974 45667899999998755443
No 246
>PRK04350 thymidine phosphorylase; Provisional
Probab=44.39 E-value=21 Score=37.60 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=23.7
Q ss_pred CCcceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418 99 EGIAECELLKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 99 ~~~~eG~I~~w~v~eGd~V~~Gd~l~~ve 127 (372)
--++-+-=+.++++.||.|++||+|+.|=
T Consensus 433 ap~d~~aGi~l~~k~Gd~V~~G~~l~~i~ 461 (490)
T PRK04350 433 APKDKGAGIDLHVKVGDKVKKGDPLYTIH 461 (490)
T ss_pred CCcCcccCeEEeccCCCEecCCCeEEEEe
Confidence 34445555789999999999999999886
No 247
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=44.31 E-value=39 Score=33.26 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=29.9
Q ss_pred eeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 131 ~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...-++||..|.+ ...++.|+.|+.|++|+.|..-
T Consensus 243 ~~~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~d~ 277 (316)
T cd06252 243 ARCYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIHFP 277 (316)
T ss_pred CcEEEEcCCCeEE-EEecCCCCEEcCCCEEEEEECC
Confidence 4467999999988 5668999999999999999753
No 248
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=44.09 E-value=17 Score=38.39 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=29.4
Q ss_pred EEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.+-||..|+|.+++++.|+.|..|+.|+++..
T Consensus 603 v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~A 634 (670)
T KOG0238|consen 603 VIVAPMPGIIEKVLVKPGDKVKEGQELVVLIA 634 (670)
T ss_pred ceecCCCCeeeeeeccchhhhcccCceEEEEe
Confidence 37899999999999999999999999999864
No 249
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=43.79 E-value=40 Score=34.71 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=33.1
Q ss_pred EEeCceeeEEecCCCeEEEEE-------------------------------ccCCCCeEecccEEEEEecC
Q 017418 126 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 126 vetdK~~~ei~ap~~G~v~~i-------------------------------~~~eg~~v~vG~~la~i~~~ 166 (372)
+-..+...+|.|+.+|+|..| +.+.|+.|..|++|++|-.+
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 345667788999999998876 46689999999999999754
No 250
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=43.37 E-value=22 Score=37.58 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=23.7
Q ss_pred CCcceEEEEEEEcCCCCeecCCCeEEEEE
Q 017418 99 EGIAECELLKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 99 ~~~~eG~I~~w~v~eGd~V~~Gd~l~~ve 127 (372)
--++-+-=+.++++.||.|++||+|+.|=
T Consensus 442 A~id~~aGi~l~~k~Gd~V~~G~pl~~i~ 470 (500)
T TIGR03327 442 APNDKGAGVYLHVKVGEKVKKGDPLYTIY 470 (500)
T ss_pred CCcCcccCeEEeccCcCEeCCCCeEEEEE
Confidence 34445555789999999999999999886
No 251
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=42.06 E-value=44 Score=34.79 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=32.1
Q ss_pred eCceeeEEecCCCeEEEEE-------------------------------ccCCCCeEecccEEEEEecCC
Q 017418 128 SDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 128 tdK~~~ei~ap~~G~v~~i-------------------------------~~~eg~~v~vG~~la~i~~~~ 167 (372)
..+-..+|.|+.+|+|..| +.+.|+.|..|++|+.|-.++
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~ 406 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADD 406 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCC
Confidence 4566788888888888776 567899999999999997433
No 252
>COG3608 Predicted deacylase [General function prediction only]
Probab=41.58 E-value=41 Score=33.70 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=29.4
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.--+.||..|.| ..++..||.|..|+.|+++-.
T Consensus 256 ~~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~ 288 (331)
T COG3608 256 DEMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHD 288 (331)
T ss_pred cceeecCCCceE-EEeecCCCcccCCCeEEEEec
Confidence 345999999988 788999999999999999975
No 253
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=41.16 E-value=43 Score=34.81 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=31.1
Q ss_pred EeCceeeEEecCCCeEEEEE-------------------------------ccCCCCeEecccEEEEEe
Q 017418 127 QSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 127 etdK~~~ei~ap~~G~v~~i-------------------------------~~~eg~~v~vG~~la~i~ 164 (372)
-.-+...+|.|+.+|+|..| +.+.||.|..|++|++|-
T Consensus 330 ~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~ 398 (434)
T PRK06078 330 PQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIY 398 (434)
T ss_pred CCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEe
Confidence 34556778888888888877 567899999999999998
No 254
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=40.47 E-value=66 Score=34.66 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=41.2
Q ss_pred EcCCCCeecCCCeEEEE-EeCceeeEE--ecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 110 FVKEGDEIEEFQPLCAV-QSDKATIEI--TSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 110 ~v~eGd~V~~Gd~l~~v-etdK~~~ei--~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
.+++||.|..||++++| |+.-.+..| ..-..|+|..| ..+|+ ..+-++|+.++..+
T Consensus 120 ~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~-~~~~~~v~~~~~~g 178 (578)
T TIGR01043 120 TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD-YTVEDTIAVVDTDG 178 (578)
T ss_pred ccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC-ceeeeeEEEEecCC
Confidence 37899999999999988 454444443 44468999777 56676 56788888887533
No 255
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=39.64 E-value=22 Score=34.31 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=26.5
Q ss_pred EEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
-+...+-|...+.+|+|||.|+.||+|.+=
T Consensus 31 l~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~d 60 (257)
T PF05896_consen 31 LLPDDFPGMKPKMLVKEGDRVKAGQPLFED 60 (257)
T ss_pred EcCcccCCCCccEEeccCCEEeCCCeeEee
Confidence 356688899999999999999999999974
No 256
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=39.00 E-value=18 Score=35.96 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=9.2
Q ss_pred EcCCCCeecCCCeEEEEE
Q 017418 110 FVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 110 ~v~eGd~V~~Gd~l~~ve 127 (372)
+|++||.|++||.|+++.
T Consensus 273 ~Vk~Gq~V~~Gq~Ig~~G 290 (319)
T PRK10871 273 LVREQQEVKAGQKIATMG 290 (319)
T ss_pred ccCCcCEECCCCeEEeEc
Confidence 345555555555555443
No 257
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=38.04 E-value=96 Score=33.09 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=38.5
Q ss_pred cCCCCeecCCCeEEEEE-eCce-eeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418 111 VKEGDEIEEFQPLCAVQ-SDKA-TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (372)
Q Consensus 111 v~eGd~V~~Gd~l~~ve-tdK~-~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~ 168 (372)
++.||.|..||+|..|. |.-. .+-+..+.+|.+..+...+|+ ..+.++|+.++.++.
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~-ytv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE-YTVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC-ceeeEEEEEEecCCC
Confidence 47999999999999885 3323 122444545555566566676 567789999976543
No 258
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=37.42 E-value=42 Score=34.15 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.3
Q ss_pred eEEEEEE-------EcCCCCeecCCCeEEE
Q 017418 103 ECELLKW-------FVKEGDEIEEFQPLCA 125 (372)
Q Consensus 103 eG~I~~w-------~v~eGd~V~~Gd~l~~ 125 (372)
+|.|.++ .|++||.|++||+|..
T Consensus 194 dGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 194 DGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 5666655 5789999999999984
No 259
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=36.80 E-value=88 Score=33.78 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=40.2
Q ss_pred EcCCCCeecCCCeEEEEEeC-ceeeE--EecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 110 FVKEGDEIEEFQPLCAVQSD-KATIE--ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 110 ~v~eGd~V~~Gd~l~~vetd-K~~~e--i~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.+++||.|..||+|..|.-. -..+- ++.-..|++.+| +.+|+ ..+.++|+.++..
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~-ytv~~~i~~~~~~ 180 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD-YTVDDTIAVLEDE 180 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEEcc
Confidence 57899999999999998633 33333 444557999776 56666 5667889988763
No 260
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=36.70 E-value=33 Score=30.47 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=27.2
Q ss_pred CeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 115 DEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 115 d~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
=.+++|+-|+.++ .+|...-+.+.+|+.|..|+.||.+.+.-
T Consensus 74 ~~l~~G~~L~l~~-----------veG~~v~~i~~~G~rV~~gd~lA~v~T~K 115 (150)
T PF09891_consen 74 ILLKKGTELCLVP-----------VEGYQVYPIVDEGDRVRKGDRLAYVTTRK 115 (150)
T ss_dssp EEE-TT-B-EEEE-----------EESSEEEESS-TSEEE-TT-EEEEEE-TT
T ss_pred EEECCCCEEEEEE-----------ecceEEEEEcccCcEeccCcEEEEEEecC
Confidence 3467777788776 45666678899999999999999997643
No 261
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=34.98 E-value=43 Score=33.81 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=41.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCcee-eEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSDKAT-IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetdK~~-~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
|.+..|.-..+..|++||-+...+-.-.. +-++++. .+ +..+++|+.|..||.|+.+..
T Consensus 281 ~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 281 GDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVGE 340 (353)
T ss_pred CcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccCC
Confidence 44455666667899999999988864333 3345554 23 456899999999999987753
No 262
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.31 E-value=63 Score=28.31 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=27.3
Q ss_pred cCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 137 SRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 137 ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
-|..|++....+..|..+..|+++|-+..-.
T Consensus 96 iPvEGYvVtpIaDvG~RvrkGd~~AAvttRk 126 (161)
T COG4072 96 IPVEGYVVTPIADVGNRVRKGDPFAAVTTRK 126 (161)
T ss_pred EecCcEEEEEeecccchhcCCCceeEEEecc
Confidence 3789999999999999999999999987543
No 263
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.08 E-value=53 Score=33.95 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=28.3
Q ss_pred EEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 125 AVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 125 ~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
+|+..+.-+.|.+. .-.|+|.+|+.|..|++|+.+...+
T Consensus 356 IldhG~gy~slyg~----~~~i~v~~G~~V~AGepIa~~G~sg 394 (420)
T COG4942 356 ILDHGGGYHSLYGG----NQSILVNPGQFVKAGEPIALVGSSG 394 (420)
T ss_pred EEEcCCccEEEecc----cceeeecCCCEeecCCchhhccCCC
Confidence 45555555555543 3356799999999999999998763
No 264
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=34.02 E-value=71 Score=24.46 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 340 PSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 340 ~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
+-|..|+..-..+-|-|+-.+|.+.+++++++
T Consensus 19 ~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g 50 (75)
T PF14492_consen 19 PKLSEALQKLSEEDPSLRVERDEETGELILSG 50 (75)
T ss_dssp HHHHHHHHHHHHH-TTSEEEEETTTSEEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEEcchhceEEEEE
Confidence 34678888889999999999999999999875
No 265
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=33.98 E-value=1.3e+02 Score=21.40 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=34.1
Q ss_pred cccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccce
Q 017418 303 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNS 358 (372)
Q Consensus 303 ~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa 358 (372)
+.|+|++...-++-+.++-+.+. + .-|++.-|+.++-.+|++...+|+
T Consensus 3 ~~~~f~lRlP~~l~~~lk~~A~~------~--gRS~NsEIv~~L~~~l~~e~~i~~ 50 (50)
T PF03869_consen 3 KDPQFNLRLPEELKEKLKERAEE------N--GRSMNSEIVQRLEEALKKEGRIQA 50 (50)
T ss_dssp CSEEEEEECEHHHHHHHHHHHHH------T--TS-HHHHHHHHHHHHHHHCTSSCT
T ss_pred CCCceeeECCHHHHHHHHHHHHH------h--CCChHHHHHHHHHHHHhccccCCC
Confidence 46788888776665555544443 2 359999999999999999877763
No 266
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=33.43 E-value=1.4e+02 Score=27.63 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=46.6
Q ss_pred CceEEEEccCCCCCcceEEEEEEEcCCCCeecC--------CC-eEEEEEeCce---e-eEEecCCCeEEEEEccCCCCe
Q 017418 87 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEE--------FQ-PLCAVQSDKA---T-IEITSRYKGKVAQLLHAPGNI 153 (372)
Q Consensus 87 ~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~--------Gd-~l~~vetdK~---~-~ei~ap~~G~v~~i~~~eg~~ 153 (372)
.+...+..|- +|+|.++...+|+.... ++ .+..+||++. . +.|-+-..+.+. .++++|+.
T Consensus 89 ~d~H~~~aP~------~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~ 161 (206)
T PRK05305 89 FNVHVNRAPV------SGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDE 161 (206)
T ss_pred ccCCEEEeCc------cCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCE
Confidence 3556667776 89999998899885543 22 3446666531 1 122222223332 25688999
Q ss_pred EecccEEEEEecC
Q 017418 154 VKVGETLLKLVVG 166 (372)
Q Consensus 154 v~vG~~la~i~~~ 166 (372)
+..|+.++.+.-+
T Consensus 162 v~kGe~~G~f~fG 174 (206)
T PRK05305 162 VERGERFGLIRFG 174 (206)
T ss_pred EccCcEEeEEecC
Confidence 9999999999765
No 267
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=33.21 E-value=41 Score=33.74 Aligned_cols=25 Identities=12% Similarity=0.380 Sum_probs=21.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
++++ |++++|+.|..|++|++|+-.
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G~ 93 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEGP 93 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEEc
Confidence 4554 899999999999999999853
No 268
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.77 E-value=45 Score=32.75 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=20.8
Q ss_pred EEEEEEEc--CCCCeecCCCeEEEEEe
Q 017418 104 CELLKWFV--KEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 104 G~I~~w~v--~eGd~V~~Gd~l~~vet 128 (372)
.....|++ ++|+.|++||+|++++-
T Consensus 70 ~~~~~~~~~~~dG~~v~~G~~i~~v~G 96 (290)
T PRK06559 70 EVTFQNPHQFKDGDRLTSGDLVLEIIG 96 (290)
T ss_pred cEEEEEeecCCCCCEecCCCEEEEEEE
Confidence 44567888 99999999999999874
No 269
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=32.73 E-value=34 Score=28.99 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=24.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEE
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL 161 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la 161 (372)
.|+|.++...+ +|.-...|+++.-..-+..==.| .++.|.+||.|+.|++|-
T Consensus 10 ~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~G--peLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 10 AGTITKITRKE-----KGGYEVTIETSDGETVVETIPAG--PELIVSEGQSVKADQPLT 61 (118)
T ss_dssp SEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEESS--S-BS--TT-EETTT-BSB
T ss_pred CeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCC--CeEEEcCCCEEecCCccc
Confidence 68888876544 45555555554332111110011 135678888888877764
No 270
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=31.83 E-value=1.2e+02 Score=30.29 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=20.0
Q ss_pred EEEccCCCCeEecccEEEEEecCC
Q 017418 144 AQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 144 ~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
.+++|++||.|..||.|+.+...+
T Consensus 270 ~~i~Vk~Gq~V~~Gq~Ig~~G~tg 293 (319)
T PRK10871 270 DTMLVREQQEVKAGQKIATMGSTG 293 (319)
T ss_pred CccccCCcCEECCCCeEEeEcCCC
Confidence 346789999999999999997644
No 271
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=31.50 E-value=41 Score=34.71 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=9.8
Q ss_pred EccCCCCeEecccEEEEEec
Q 017418 146 LLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 146 i~~~eg~~v~vG~~la~i~~ 165 (372)
++.+.||.|+.|++|+.|-.
T Consensus 381 l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 381 LHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred EEecCCCeeccCCeEEEEec
Confidence 33444555555555555543
No 272
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=31.29 E-value=73 Score=40.19 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=38.8
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEe
Q 017418 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVK 155 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~ 155 (372)
.++|++|+.|++||+||+. |--+..|-+..+|+|.-..+.+|-++.
T Consensus 2423 ~l~v~~g~~V~~g~~la~w--dp~~~piisE~~G~v~f~d~~~g~t~~ 2468 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEW--DPYTLPIITEKTGTVSYQDLKDGISIT 2468 (2836)
T ss_pred EEEecCCCEecCCCEEEEE--cCCCcceEeecceEEEEEEEecceeEE
Confidence 6789999999999999987 566778899999999877777776654
No 273
>PRK02259 aspartoacylase; Provisional
Probab=28.20 E-value=24 Score=34.31 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=36.3
Q ss_pred EcCCC--CeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEE
Q 017418 110 FVKEG--DEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL 161 (372)
Q Consensus 110 ~v~eG--d~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la 161 (372)
.++.| +.|++||+|+.. .|.-++.++++.+|+. +++.|...+..|..++
T Consensus 231 ~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~p--vfine~ay~~kg~a~~ 281 (288)
T PRK02259 231 QLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYP--VFINEAAYYEKGIAMS 281 (288)
T ss_pred hhcCCCccccCCCCcceec-CCCCEEEecCCCCEEe--EEecHHHHHhhhhHhh
Confidence 45556 669999999988 7788888999999888 5555655555555443
No 274
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=28.08 E-value=61 Score=31.00 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.+.+..|.+++|+.|..|++|++|+-
T Consensus 48 ~~~~~~~~~~eG~~v~~g~~vl~i~G 73 (281)
T cd00516 48 PGPLVILAVPEGTVVEPGEPLLTIEG 73 (281)
T ss_pred CCceEEEECCCCCEecCCCEEEEEEE
Confidence 36677899999999999999999984
No 275
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=27.71 E-value=34 Score=32.43 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=25.5
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeE
Q 017418 108 KWFVKEGDEIEEFQPLCAVQSDKATIE 134 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~vetdK~~~e 134 (372)
.|++..|..+++=|+.|.||.||..++
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 699999999999999999999999776
No 276
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=27.37 E-value=1e+02 Score=31.91 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=18.1
Q ss_pred EEeCceeeEEecCCCeEEEEEc
Q 017418 126 VQSDKATIEITSRYKGKVAQLL 147 (372)
Q Consensus 126 vetdK~~~ei~ap~~G~v~~i~ 147 (372)
+..-+...+|.|..+|+|..+.
T Consensus 330 l~~~~~~~~v~A~~~G~v~~id 351 (435)
T COG0213 330 LPVAKYTAEVKAQTSGYVSEID 351 (435)
T ss_pred cccCceEEEEeccCceeEEeec
Confidence 4456778899999999999884
No 277
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=27.30 E-value=67 Score=32.43 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.+..|.+++|+.|..|++|++|+-
T Consensus 71 ~~~i~a~~eG~~v~~gepvl~i~G 94 (352)
T PRK07188 71 KLKIRYLKDGDIINPFETVLEIEG 94 (352)
T ss_pred ceEEEEcCCCCEecCCCEEEEEEE
Confidence 356889999999999999999985
No 278
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=26.84 E-value=82 Score=39.92 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=17.2
Q ss_pred EEcCCCCeecCCCeEEEEE
Q 017418 109 WFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 109 w~v~eGd~V~~Gd~l~~ve 127 (372)
+.|++||.|..||+|+.+-
T Consensus 2616 l~v~~g~~v~~gdilak~p 2634 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIP 2634 (2890)
T ss_pred EEecCCCEecccceEeecc
Confidence 5799999999999999884
No 279
>PRK11637 AmiB activator; Provisional
Probab=26.34 E-value=86 Score=32.13 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=0.0
Q ss_pred EEecCCCeEEEEE----------------------------ccCCCCeEecccEEEEEecCC
Q 017418 134 EITSRYKGKVAQL----------------------------LHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 134 ei~ap~~G~v~~i----------------------------~~~eg~~v~vG~~la~i~~~~ 167 (372)
.|.|+.+|+|... .|.+|+.|..|++|+.+...+
T Consensus 341 ~v~A~~~G~V~~~~~~~~~G~~vii~hg~g~~t~Y~~~~~~~v~~G~~V~~G~~ig~~g~~g 402 (428)
T PRK11637 341 EVKAIADGRVLLADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGAQVRAGQPIALVGSSG 402 (428)
T ss_pred eEEecCCeEEEEeeccCCcccEEEEEeCCCcEEEccCCCcCCCCCcCEECCCCeEEeecCCC
No 280
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=25.63 E-value=91 Score=24.59 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=17.4
Q ss_pred EEEccCCCCeEecccEEEEEec
Q 017418 144 AQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 144 ~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.+.++++|+.+..|++|+.+.-
T Consensus 47 v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 47 VEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEeCCCCCccCCcEEEEEEe
Confidence 4678999999999999999863
No 281
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=25.08 E-value=62 Score=30.55 Aligned_cols=72 Identities=18% Similarity=0.049 Sum_probs=51.8
Q ss_pred EEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeC-----ce----------eeEEecCCCeEEEEEccCCCCeEec
Q 017418 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSD-----KA----------TIEITSRYKGKVAQLLHAPGNIVKV 156 (372)
Q Consensus 92 i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetd-----K~----------~~ei~ap~~G~v~~i~~~eg~~v~v 156 (372)
+....+||+++---+.+-.|-.||..+.|+.|.+|..- |. ..-.+.-..|...++ =++..|.+
T Consensus 79 l~~G~fGENLtv~Gl~e~~v~IGD~~riG~avleVsqpR~PC~kl~~r~~~~~~~~~~~~~g~~G~Y~RV--L~~G~V~~ 156 (223)
T PRK11536 79 FVAPAFGENLSTDGLTESNVFIGDIFRWGEALIQVTQPRSPCYKLNYHFDISDIAQLMQNSGKCGWLYRV--IAPGKVSA 156 (223)
T ss_pred cCCCCccCCEEecCcChhhCCccCEEEECCEEEEEecCCCCCCchhhhccchhHHHHHHhhCCcEEEEEE--ECCcEEcC
Confidence 45567899888666778889999999999999888642 11 011234456776555 35667999
Q ss_pred ccEEEEEec
Q 017418 157 GETLLKLVV 165 (372)
Q Consensus 157 G~~la~i~~ 165 (372)
|+.|-.++.
T Consensus 157 GD~v~l~~r 165 (223)
T PRK11536 157 DAPLELVSR 165 (223)
T ss_pred CCEEEEEeC
Confidence 999999975
No 282
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=24.50 E-value=3.7e+02 Score=24.45 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=52.7
Q ss_pred CCCceEEEEccCCCCCcceEEEEEEEcCCCCeecC---------------CCeEEEEEeCc---eeeEEecCCCeEEEEE
Q 017418 85 PASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEE---------------FQPLCAVQSDK---ATIEITSRYKGKVAQL 146 (372)
Q Consensus 85 ~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~---------------Gd~l~~vetdK---~~~ei~ap~~G~v~~i 146 (372)
...+..-+..|- .|+|.+...-+|+.... -..++.++++. +.+.|-+-..|.|. +
T Consensus 77 sp~DyHr~haPv------~G~v~~~~~i~G~~~~v~~~~~~~~~~~~~~NeR~~~~i~~~~G~v~~v~Vga~~v~~I~-~ 149 (202)
T PF02666_consen 77 SPFDYHRNHAPV------DGRVEEVRYIPGKLLPVNPPALSHIPGLFAENERVVLVIETKFGKVAVVQVGALLVGSIV-L 149 (202)
T ss_pred CCCcceEEEecC------CEEEEEEEEECccccccChHHhhccCCeeEEeeEEEEEEEECCCEEEEEEeccceeceeE-E
Confidence 344777788887 89999999999998642 22344555433 24556666667763 4
Q ss_pred cc--CCCCeEecccEEEEEec
Q 017418 147 LH--APGNIVKVGETLLKLVV 165 (372)
Q Consensus 147 ~~--~eg~~v~vG~~la~i~~ 165 (372)
.+ ++|+.+..|+.++.+.-
T Consensus 150 ~~~~~~g~~v~kG~e~G~f~f 170 (202)
T PF02666_consen 150 TVDPKEGDEVKKGEELGYFRF 170 (202)
T ss_pred EecccCCCEEecCcEeCEEec
Confidence 45 58999999999999876
No 283
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=24.39 E-value=1.8e+02 Score=27.74 Aligned_cols=76 Identities=11% Similarity=0.134 Sum_probs=57.2
Q ss_pred CCCCceEEEEccCCCCCcceEEEEEEEcCCCCeecCCC---------eEEEEEeCce---eeEEecCCCeEEEEEccCCC
Q 017418 84 LPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQ---------PLCAVQSDKA---TIEITSRYKGKVAQLLHAPG 151 (372)
Q Consensus 84 ~~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd---------~l~~vetdK~---~~ei~ap~~G~v~~i~~~eg 151 (372)
+...+..-+.+|- .|+|.+...-+|+....+- .++.++|+.- .+.|-+-..|.| ...+++|
T Consensus 119 Lsp~DyHr~haP~------~G~i~~~~~~~G~~~~v~~~~~~~~NER~~~~i~t~~g~v~~v~Vga~~v~~I-v~~~~~~ 191 (239)
T COG0688 119 LSPFDYHRNHAPV------DGTIIEVRYVPGKFFSANLDKAFTENERNSVLIETEQGKVVVVQVAGLVARRI-VCYVKEG 191 (239)
T ss_pred eCcceeeeEeCCC------CCEEEEEEEECCceeccChhhhhcccceEEEEEEcCCCcEEEEEEhhheeeEE-EEEecCC
Confidence 3345777788997 8999999999999876643 3466777664 455667777777 4557889
Q ss_pred CeEecccEEEEEecC
Q 017418 152 NIVKVGETLLKLVVG 166 (372)
Q Consensus 152 ~~v~vG~~la~i~~~ 166 (372)
+.+..|+.+..+.-+
T Consensus 192 ~~v~~G~~~G~~~fG 206 (239)
T COG0688 192 DTVKKGERIGGIRFG 206 (239)
T ss_pred cEEEhhhhhhhhhhC
Confidence 999999999988765
No 284
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=24.22 E-value=89 Score=25.01 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=23.3
Q ss_pred CCeEEEEEccCC-CCeEecccEEEEEecCC
Q 017418 139 YKGKVAQLLHAP-GNIVKVGETLLKLVVGD 167 (372)
Q Consensus 139 ~~G~v~~i~~~e-g~~v~vG~~la~i~~~~ 167 (372)
.-|.|..+.... |+.|..|+.|+.|+...
T Consensus 27 ~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k 56 (96)
T cd06848 27 LLGDIVFVELPEVGTEVKKGDPFGSVESVK 56 (96)
T ss_pred hCCCEEEEEecCCCCEEeCCCEEEEEEEcc
Confidence 367787776655 99999999999998654
No 285
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=23.96 E-value=29 Score=29.86 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=16.9
Q ss_pred ChHHHHHHHHhCCCCcccc
Q 017418 205 TPTVRNLAKLYGINLYDVD 223 (372)
Q Consensus 205 sP~aR~lA~e~gIdl~~V~ 223 (372)
=|.+|.||.++||+++.|+
T Consensus 35 LPSvRelA~~~~VNpnTv~ 53 (125)
T COG1725 35 LPSVRELAKDLGVNPNTVQ 53 (125)
T ss_pred CCcHHHHHHHhCCCHHHHH
Confidence 5899999999999988764
No 286
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=22.66 E-value=89 Score=30.71 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=19.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
..++ . .+++|+.|..|++|++|+-.
T Consensus 52 ~~~i-~-~~~dG~~v~~g~~i~~i~G~ 76 (302)
T cd01571 52 PVKV-Y-ALPEGTIFNPKEPVLRIEGP 76 (302)
T ss_pred CeEE-E-EeCCCCEECCCCcEEEEEeC
Confidence 3455 3 48999999999999999854
No 287
>PLN02964 phosphatidylserine decarboxylase
Probab=22.66 E-value=3.7e+02 Score=29.48 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=56.2
Q ss_pred CCCCceEEEEccCCCCCcceEEEEEEEcCCCCeecC----------------CCeEEEEEeCc----eeeEEecCCCeEE
Q 017418 84 LPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEE----------------FQPLCAVQSDK----ATIEITSRYKGKV 143 (372)
Q Consensus 84 ~~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~----------------Gd~l~~vetdK----~~~ei~ap~~G~v 143 (372)
+.+.+..-+..|. +|+|.+...-+|+.... -..++.++|++ +.++|-|-.-|.|
T Consensus 492 LsP~DYHR~HsPv------~G~v~~~~~I~G~l~sVnp~al~~~~~~~f~~NeR~v~~iet~~~G~V~~v~VGA~~VgsI 565 (644)
T PLN02964 492 LAPQDYHRFHVPV------SGVIEKFVDVPGSLYTVNPIAVNSKYCNVFTENKRAVCIISTAEFGKVAFVAIGATMVGSI 565 (644)
T ss_pred ECCceeceeecCC------CCEEEEEEEECCeeEecChhhhcccccchhhcCeeEEEEEEcCCCCEEEEEEEeeeEeeEE
Confidence 3445666778887 89999988888863332 12455778764 4567777777777
Q ss_pred EEEccCCCCeEecccEEEEEecCCC
Q 017418 144 AQLLHAPGNIVKVGETLLKLVVGDS 168 (372)
Q Consensus 144 ~~i~~~eg~~v~vG~~la~i~~~~~ 168 (372)
. ..+++|+.|..|+.++.+.-+++
T Consensus 566 ~-~~~~~g~~v~KGdE~G~F~fGGS 589 (644)
T PLN02964 566 T-FVKKEGDHVKKGDELGYFSFGGS 589 (644)
T ss_pred E-EEecCCCEEccCcEeeeeecCCc
Confidence 3 55788999999999999987654
No 288
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=22.48 E-value=1.2e+02 Score=38.66 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=14.7
Q ss_pred EccCCCCeEecccEEEEEecC
Q 017418 146 LLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 146 i~~~eg~~v~vG~~la~i~~~ 166 (372)
+.+++|+.|..|++|+.+-.+
T Consensus 2616 l~v~~g~~v~~gdilak~p~~ 2636 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIPKA 2636 (2890)
T ss_pred EEecCCCEecccceEeecccc
Confidence 456777778888888877543
No 289
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=21.80 E-value=2.3e+02 Score=25.86 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhcCccceEEeCCCC
Q 017418 341 SLIKSLSMAMSKYPFMNSCFNEESL 365 (372)
Q Consensus 341 fiiKAva~ALk~~P~lNa~~~~~~~ 365 (372)
-|-+|+-..+++||.|.+.|..+++
T Consensus 43 ~l~~A~~~~~~~h~~Lr~~~~~~~~ 67 (301)
T PF00668_consen 43 RLRQALERLIARHPILRTRFEEDDG 67 (301)
T ss_dssp HHHHHHHHHHHH-GGGGEEEEECTT
T ss_pred HHhhhhHhhhhhhhhhhheeeeecc
Confidence 4567888889999999999987654
No 290
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=21.57 E-value=55 Score=25.24 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=21.6
Q ss_pred EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418 109 WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (372)
Q Consensus 109 w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~ 147 (372)
|..++||.| .|.++- +..+...+++.....|.|..-.
T Consensus 2 y~p~~GdiV-~g~V~~-i~~~g~~v~i~~~~~G~l~~se 38 (86)
T cd05789 2 YIPEVGDVV-IGRVTE-VGFKRWKVDINSPYDAVLPLSE 38 (86)
T ss_pred CcCCCCCEE-EEEEEE-ECCCEEEEECCCCeEEEEEHHH
Confidence 444566666 333332 4445567777777888876433
No 291
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=21.03 E-value=32 Score=29.19 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=10.6
Q ss_pred EEEcCCCCeecCCCeEE
Q 017418 108 KWFVKEGDEIEEFQPLC 124 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~ 124 (372)
++.|++||.|+.||+|-
T Consensus 45 eLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 45 ELIVSEGQSVKADQPLT 61 (118)
T ss_dssp -BS--TT-EETTT-BSB
T ss_pred eEEEcCCCEEecCCccc
Confidence 67899999999999874
No 292
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=20.89 E-value=72 Score=26.95 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=24.2
Q ss_pred cCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHH
Q 017418 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239 (372)
Q Consensus 203 ~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~ 239 (372)
...|.+.++++++|||++.. -+ .++.+|+..+
T Consensus 41 ~~~~~a~~~l~~~Gid~~~~---~~--~l~~~~~~~~ 72 (140)
T smart00226 41 GADPRAVEVLKEHGIALSHH---AS--QLTSSDFKNA 72 (140)
T ss_pred CCCHHHHHHHHHcCcCccce---ec--cCCHHHHHhC
Confidence 36899999999999998632 22 6888887644
No 293
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.63 E-value=1e+02 Score=26.55 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=29.2
Q ss_pred ChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHH
Q 017418 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241 (372)
Q Consensus 205 sP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~ 241 (372)
.-..+.-|++.|++..-|+=+|. -||++||+.+..
T Consensus 47 ~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~~ 81 (130)
T COG3453 47 FAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQR 81 (130)
T ss_pred hHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHHH
Confidence 45678889999999999988774 599999998864
No 294
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=20.07 E-value=66 Score=30.08 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=18.3
Q ss_pred EEEcCCCCeecCCCeEEEEEe
Q 017418 108 KWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~vet 128 (372)
+..|++||.|++||.|..+.+
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~G~ 235 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYVGS 235 (277)
T ss_pred hhccCCCCEeccCCEEEEecC
Confidence 578999999999999998853
Done!